Query 048794
Match_columns 967
No_of_seqs 518 out of 4439
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 23:25:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048794.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048794hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.9E-37 6.6E-42 357.8 38.6 505 365-938 82-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4.7E-36 1.6E-40 346.2 41.8 489 331-904 83-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 8.3E-30 2.9E-34 275.9 40.6 380 480-941 7-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.5E-27 5.3E-32 258.1 46.3 382 445-908 7-388 (388)
5 1xi4_A Clathrin heavy chain; a 100.0 1.1E-22 3.6E-27 232.1 73.6 831 5-946 349-1375(1630)
6 1xi4_A Clathrin heavy chain; a 100.0 2.5E-21 8.7E-26 221.0 76.0 825 40-938 349-1326(1630)
7 2gw1_A Mitochondrial precursor 99.9 7.5E-25 2.6E-29 247.6 35.7 275 648-929 186-485 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.5E-23 5.3E-28 236.8 39.3 454 404-899 8-489 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 1.1E-23 3.9E-28 233.2 33.8 286 648-942 60-391 (450)
10 3fp2_A TPR repeat-containing p 99.9 2.1E-23 7.2E-28 237.1 35.8 443 437-929 25-498 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 1.6E-23 5.5E-28 231.9 33.6 360 506-947 25-446 (450)
12 4g26_A Pentatricopeptide repea 99.9 2.9E-24 1E-28 234.0 25.1 185 90-274 29-222 (501)
13 4g26_A Pentatricopeptide repea 99.9 3.7E-24 1.3E-28 233.3 25.2 207 104-310 7-223 (501)
14 3fp2_A TPR repeat-containing p 99.9 1E-23 3.5E-28 239.7 28.8 437 471-959 24-495 (537)
15 3ieg_A DNAJ homolog subfamily 99.9 3.3E-21 1.1E-25 206.3 32.6 312 618-938 9-352 (359)
16 3ieg_A DNAJ homolog subfamily 99.9 4.6E-20 1.6E-24 197.3 38.2 211 689-906 126-353 (359)
17 2xm6_A Protein corresponding t 99.9 2E-19 6.8E-24 200.2 44.6 270 648-938 147-452 (490)
18 3hym_B Cell division cycle pro 99.9 8.3E-21 2.8E-25 200.4 29.9 293 645-944 19-323 (330)
19 2xm6_A Protein corresponding t 99.9 9.4E-19 3.2E-23 194.7 45.9 391 436-929 38-474 (490)
20 4g1t_A Interferon-induced prot 99.9 7.4E-19 2.5E-23 195.6 35.0 380 505-933 49-471 (472)
21 3hym_B Cell division cycle pro 99.8 1.1E-18 3.6E-23 184.1 33.4 296 607-910 17-322 (330)
22 2ooe_A Cleavage stimulation fa 99.8 5.6E-18 1.9E-22 190.6 40.4 298 624-928 142-498 (530)
23 1fch_A Peroxisomal targeting s 99.8 2.6E-19 9.1E-24 192.0 25.5 293 622-921 35-358 (368)
24 1fch_A Peroxisomal targeting s 99.8 3.1E-20 1E-24 199.3 17.4 287 658-952 35-356 (368)
25 3cv0_A Peroxisome targeting si 99.8 3E-18 1E-22 180.3 27.0 270 651-929 24-322 (327)
26 4eqf_A PEX5-related protein; a 99.8 1.8E-18 6.1E-23 185.0 25.4 268 648-922 65-356 (365)
27 3mkr_A Coatomer subunit epsilo 99.8 3.1E-19 1.1E-23 181.8 17.9 271 658-945 9-284 (291)
28 4g1t_A Interferon-induced prot 99.8 2.1E-17 7.1E-22 183.9 34.1 385 438-887 52-459 (472)
29 2ooe_A Cleavage stimulation fa 99.8 6.9E-16 2.4E-20 173.5 45.7 218 665-887 255-492 (530)
30 4eqf_A PEX5-related protein; a 99.8 1.5E-19 5.1E-24 193.5 15.0 261 682-950 64-351 (365)
31 3cv0_A Peroxisome targeting si 99.8 1E-18 3.5E-23 184.0 17.6 266 682-954 20-314 (327)
32 2pl2_A Hypothetical conserved 99.8 4.7E-18 1.6E-22 165.3 16.0 190 752-947 4-206 (217)
33 3u4t_A TPR repeat-containing p 99.8 3.1E-17 1.1E-21 167.2 21.2 252 684-940 4-269 (272)
34 3mkr_A Coatomer subunit epsilo 99.8 2.6E-16 8.8E-21 160.1 26.4 277 619-917 6-289 (291)
35 3uq3_A Heat shock protein STI1 99.7 3.4E-17 1.2E-21 165.4 19.6 231 684-929 6-249 (258)
36 3e4b_A ALGK; tetratricopeptide 99.7 4E-17 1.4E-21 178.0 20.5 272 648-938 141-438 (452)
37 2pl2_A Hypothetical conserved 99.7 1.4E-16 4.9E-21 154.7 21.9 200 715-921 2-213 (217)
38 2h6f_A Protein farnesyltransfe 99.7 2.1E-16 7.2E-21 166.0 19.4 247 683-937 97-364 (382)
39 1ouv_A Conserved hypothetical 99.7 4.1E-15 1.4E-19 151.2 27.6 230 682-929 5-258 (273)
40 3uq3_A Heat shock protein STI1 99.7 1.5E-15 5E-20 153.4 23.7 225 648-887 5-236 (258)
41 1b89_A Protein (clathrin heavy 99.7 8.5E-15 2.9E-19 150.7 27.6 283 29-354 15-304 (449)
42 3e4b_A ALGK; tetratricopeptide 99.7 3.7E-15 1.2E-19 162.5 26.1 345 513-926 9-391 (452)
43 2h6f_A Protein farnesyltransfe 99.7 4.7E-15 1.6E-19 155.7 24.5 250 647-906 96-366 (382)
44 3u4t_A TPR repeat-containing p 99.7 5.4E-15 1.9E-19 150.5 24.3 248 650-906 5-268 (272)
45 2q7f_A YRRB protein; TPR, prot 99.7 6.4E-16 2.2E-20 154.3 16.4 216 719-940 24-241 (243)
46 1b89_A Protein (clathrin heavy 99.7 1.4E-14 4.8E-19 149.0 24.6 284 239-564 15-305 (449)
47 2ho1_A Type 4 fimbrial biogene 99.7 7.4E-15 2.5E-19 147.4 22.2 204 722-929 41-245 (252)
48 1ouv_A Conserved hypothetical 99.7 1.1E-13 3.7E-18 140.7 31.0 225 645-887 3-251 (273)
49 3vtx_A MAMA; tetratricopeptide 99.7 2.9E-15 9.9E-20 141.8 18.0 178 751-934 3-181 (184)
50 1xnf_A Lipoprotein NLPI; TPR, 99.7 4.8E-16 1.6E-20 158.7 13.1 247 660-916 17-269 (275)
51 2vq2_A PILW, putative fimbrial 99.6 1.3E-14 4.5E-19 142.7 22.1 207 719-929 9-218 (225)
52 3sf4_A G-protein-signaling mod 99.6 4.9E-16 1.7E-20 169.1 11.7 299 648-946 9-367 (406)
53 1xnf_A Lipoprotein NLPI; TPR, 99.6 8.3E-15 2.8E-19 149.4 18.7 243 695-947 17-267 (275)
54 2q7f_A YRRB protein; TPR, prot 99.6 2.3E-14 8E-19 142.9 20.1 215 682-903 22-237 (243)
55 4a1s_A PINS, partner of inscut 99.6 3.9E-15 1.3E-19 162.1 14.8 276 651-927 51-377 (411)
56 4abn_A Tetratricopeptide repea 99.6 2.8E-15 9.4E-20 164.6 13.0 215 697-919 82-318 (474)
57 3vtx_A MAMA; tetratricopeptide 99.6 4.4E-15 1.5E-19 140.6 12.3 169 787-959 4-174 (184)
58 2ho1_A Type 4 fimbrial biogene 99.6 3.6E-13 1.2E-17 135.0 26.6 200 683-887 37-238 (252)
59 3sf4_A G-protein-signaling mod 99.6 9.3E-15 3.2E-19 158.9 15.4 296 615-910 12-364 (406)
60 2ond_A Cleavage stimulation fa 99.6 6.9E-13 2.4E-17 136.9 28.3 251 665-933 33-304 (308)
61 3ro2_A PINS homolog, G-protein 99.6 1.1E-14 3.7E-19 153.8 14.9 275 652-926 9-336 (338)
62 2ond_A Cleavage stimulation fa 99.6 3.6E-13 1.2E-17 139.0 25.5 224 700-929 33-277 (308)
63 2vq2_A PILW, putative fimbrial 99.6 7.9E-13 2.7E-17 129.9 26.5 200 682-886 7-210 (225)
64 3ulq_A Response regulator aspa 99.6 5E-14 1.7E-18 151.2 18.7 303 619-926 19-372 (383)
65 4abn_A Tetratricopeptide repea 99.6 1.1E-13 3.9E-18 151.8 21.6 214 663-884 83-318 (474)
66 4i17_A Hypothetical protein; T 99.6 4.7E-14 1.6E-18 138.8 15.8 210 715-936 4-224 (228)
67 4a1s_A PINS, partner of inscut 99.6 7E-14 2.4E-18 152.1 18.4 273 615-887 51-372 (411)
68 4e6h_A MRNA 3'-END-processing 99.5 2.7E-11 9.2E-16 135.8 38.9 225 701-929 327-577 (679)
69 3ulq_A Response regulator aspa 99.5 4.6E-14 1.6E-18 151.5 14.2 291 658-951 22-364 (383)
70 3ro2_A PINS homolog, G-protein 99.5 1.8E-13 6.3E-18 144.3 17.6 272 616-887 9-332 (338)
71 3nf1_A KLC 1, kinesin light ch 99.5 1.7E-14 5.9E-19 150.2 9.2 205 720-925 71-310 (311)
72 4gyw_A UDP-N-acetylglucosamine 99.5 7.6E-14 2.6E-18 158.6 14.9 174 750-928 6-180 (723)
73 4gyw_A UDP-N-acetylglucosamine 99.5 4.9E-14 1.7E-18 160.2 13.2 163 787-953 8-172 (723)
74 4e6h_A MRNA 3'-END-processing 99.5 1.8E-10 6.1E-15 129.2 41.6 472 349-887 49-570 (679)
75 3as5_A MAMA; tetratricopeptide 99.5 8.2E-13 2.8E-17 125.1 15.4 171 754-929 9-180 (186)
76 1qqe_A Vesicular transport pro 99.4 1.5E-12 5.2E-17 132.9 17.7 213 698-929 32-276 (292)
77 3spa_A Mtrpol, DNA-directed RN 99.4 4.4E-13 1.5E-17 149.3 13.4 117 53-169 128-248 (1134)
78 3spa_A Mtrpol, DNA-directed RN 99.4 1.8E-13 6.3E-18 152.3 10.1 120 85-204 125-248 (1134)
79 3q15_A PSP28, response regulat 99.4 2.9E-12 9.9E-17 137.0 19.3 296 623-923 23-366 (378)
80 3nf1_A KLC 1, kinesin light ch 99.4 1E-12 3.5E-17 136.7 14.2 240 646-886 25-306 (311)
81 4i17_A Hypothetical protein; T 99.4 1.1E-11 3.7E-16 121.8 20.7 210 681-903 5-224 (228)
82 1hz4_A MALT regulatory protein 99.4 1.7E-11 5.9E-16 131.0 23.7 271 655-925 21-325 (373)
83 4ga2_A E3 SUMO-protein ligase 99.4 7.8E-14 2.7E-18 125.7 4.1 144 794-941 3-149 (150)
84 3q15_A PSP28, response regulat 99.4 1.5E-11 5.2E-16 131.3 22.7 233 651-886 104-364 (378)
85 1qqe_A Vesicular transport pro 99.4 1.3E-12 4.4E-17 133.5 13.2 236 701-957 3-271 (292)
86 3qky_A Outer membrane assembly 99.4 9.6E-13 3.3E-17 132.4 12.1 189 754-947 16-253 (261)
87 3as5_A MAMA; tetratricopeptide 99.4 9.7E-13 3.3E-17 124.7 10.3 173 789-965 9-183 (186)
88 3urz_A Uncharacterized protein 99.4 1.9E-12 6.6E-17 124.4 11.9 168 758-932 9-196 (208)
89 2pzi_A Probable serine/threoni 99.3 5.2E-12 1.8E-16 145.1 14.6 176 764-945 402-587 (681)
90 1hz4_A MALT regulatory protein 99.3 1.3E-10 4.6E-15 124.0 23.7 301 616-925 18-352 (373)
91 3edt_B KLC 2, kinesin light ch 99.3 1E-11 3.4E-16 127.0 14.0 227 694-922 12-281 (283)
92 3qky_A Outer membrane assembly 99.3 9.9E-11 3.4E-15 117.6 17.9 215 681-916 13-255 (261)
93 2yhc_A BAMD, UPF0169 lipoprote 99.3 1.1E-10 3.7E-15 113.9 16.4 190 719-929 5-220 (225)
94 4gco_A Protein STI-1; structur 99.2 1.7E-11 5.8E-16 106.2 8.9 114 819-934 8-123 (126)
95 3edt_B KLC 2, kinesin light ch 99.2 7.1E-11 2.4E-15 120.6 15.1 227 660-886 13-280 (283)
96 4ga2_A E3 SUMO-protein ligase 99.2 1.8E-11 6.3E-16 110.1 9.2 144 759-908 3-149 (150)
97 3urz_A Uncharacterized protein 99.2 1E-10 3.4E-15 112.4 14.7 192 682-901 3-198 (208)
98 2pzi_A Probable serine/threoni 99.2 9.6E-11 3.3E-15 134.6 17.0 172 694-873 402-583 (681)
99 3mv2_B Coatomer subunit epsilo 99.2 4.8E-10 1.6E-14 110.5 18.9 186 737-929 85-289 (310)
100 2fo7_A Synthetic consensus TPR 99.2 2.7E-10 9.1E-15 100.9 14.8 133 790-925 3-135 (136)
101 3rjv_A Putative SEL1 repeat pr 99.2 1.6E-09 5.4E-14 104.2 21.2 174 701-888 4-198 (212)
102 2yhc_A BAMD, UPF0169 lipoprote 99.2 7.3E-11 2.5E-15 115.2 10.0 188 753-961 4-219 (225)
103 2ifu_A Gamma-SNAP; membrane fu 99.2 1.4E-10 4.7E-15 119.4 12.3 158 727-885 45-222 (307)
104 2vsy_A XCC0866; transferase, g 99.2 2.6E-10 9E-15 129.1 15.6 150 732-886 3-156 (568)
105 3qou_A Protein YBBN; thioredox 99.1 3.4E-11 1.2E-15 122.3 7.3 159 789-952 118-281 (287)
106 3rjv_A Putative SEL1 repeat pr 99.1 3E-09 1E-13 102.3 19.2 176 666-853 4-198 (212)
107 3dra_A Protein farnesyltransfe 99.1 1.9E-08 6.6E-13 100.7 25.1 221 660-886 45-286 (306)
108 3mv2_B Coatomer subunit epsilo 99.1 9.7E-09 3.3E-13 101.3 22.4 248 619-893 20-286 (310)
109 3dra_A Protein farnesyltransfe 99.1 5.3E-09 1.8E-13 104.8 20.7 227 697-929 47-295 (306)
110 2r5s_A Uncharacterized protein 99.1 3.5E-11 1.2E-15 112.1 4.4 160 755-920 8-171 (176)
111 2r5s_A Uncharacterized protein 99.1 2.5E-10 8.5E-15 106.3 9.8 161 720-885 8-171 (176)
112 3gyz_A Chaperone protein IPGC; 99.1 2.8E-10 9.6E-15 101.3 9.5 102 824-927 37-138 (151)
113 2ifu_A Gamma-SNAP; membrane fu 99.1 1.1E-09 3.6E-14 112.7 15.1 159 691-850 44-222 (307)
114 2vsy_A XCC0866; transferase, g 99.1 1E-10 3.6E-15 132.4 8.1 163 766-933 2-169 (568)
115 1hh8_A P67PHOX, NCF-2, neutrop 99.1 1.8E-09 6.3E-14 104.4 15.3 150 755-924 8-174 (213)
116 3qou_A Protein YBBN; thioredox 99.1 8E-10 2.7E-14 112.1 13.1 162 754-920 118-282 (287)
117 2vgx_A Chaperone SYCD; alterna 99.0 2.7E-10 9.1E-15 102.0 7.6 116 810-929 9-125 (148)
118 4gco_A Protein STI-1; structur 99.0 3.3E-09 1.1E-13 91.6 13.9 109 790-902 15-124 (126)
119 2fo7_A Synthetic consensus TPR 99.0 6.1E-09 2.1E-13 92.0 16.2 129 755-886 3-131 (136)
120 2c2l_A CHIP, carboxy terminus 99.0 4.9E-10 1.7E-14 113.2 8.9 185 752-947 3-191 (281)
121 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1.4E-08 5E-13 98.0 18.2 133 790-928 8-156 (213)
122 4f3v_A ESX-1 secretion system 99.0 1.9E-09 6.4E-14 104.9 10.9 136 790-929 104-243 (282)
123 4f3v_A ESX-1 secretion system 99.0 6.8E-09 2.3E-13 101.0 13.9 204 695-904 18-252 (282)
124 2lni_A Stress-induced-phosphop 98.9 1.6E-09 5.5E-14 95.4 8.2 113 824-938 17-130 (133)
125 2xcb_A PCRH, regulatory protei 98.9 1.3E-09 4.3E-14 97.2 7.4 108 820-929 14-122 (142)
126 3u3w_A Transcriptional activat 98.9 1.7E-07 6E-12 95.4 23.8 161 725-885 82-264 (293)
127 1p5q_A FKBP52, FK506-binding p 98.9 8.7E-11 3E-15 122.1 -1.0 157 765-927 125-299 (336)
128 2vyi_A SGTA protein; chaperone 98.9 3.2E-09 1.1E-13 93.2 9.1 115 790-908 14-129 (131)
129 3dss_A Geranylgeranyl transfer 98.9 1.1E-07 3.8E-12 95.6 21.1 220 701-928 48-310 (331)
130 2uy1_A Cleavage stimulation fa 98.9 2.3E-06 7.7E-11 93.4 33.2 201 666-885 197-411 (493)
131 2e2e_A Formate-dependent nitri 98.9 2.6E-09 9.1E-14 99.6 8.6 119 764-886 21-143 (177)
132 3u3w_A Transcriptional activat 98.9 2.9E-08 1E-12 101.3 16.9 165 758-922 80-266 (293)
133 2qfc_A PLCR protein; TPR, HTH, 98.9 3.9E-08 1.3E-12 100.3 16.5 127 794-920 121-264 (293)
134 2qfc_A PLCR protein; TPR, HTH, 98.9 1.5E-07 5E-12 96.0 20.7 166 720-885 77-264 (293)
135 3gyz_A Chaperone protein IPGC; 98.9 3.9E-08 1.3E-12 87.4 14.0 102 788-894 36-138 (151)
136 3q7a_A Farnesyltransferase alp 98.9 8.8E-07 3E-11 89.4 25.4 235 658-899 64-343 (349)
137 1na0_A Designed protein CTPR3; 98.8 6.9E-09 2.3E-13 90.0 8.7 114 788-905 9-123 (125)
138 2uy1_A Cleavage stimulation fa 98.8 4E-06 1.4E-10 91.4 32.0 386 5-429 3-411 (493)
139 3upv_A Heat shock protein STI1 98.8 7.5E-09 2.6E-13 89.9 8.6 97 825-923 6-102 (126)
140 1hxi_A PEX5, peroxisome target 98.8 1.2E-08 4.1E-13 87.3 9.5 102 825-928 19-120 (121)
141 2fbn_A 70 kDa peptidylprolyl i 98.8 5.2E-10 1.8E-14 106.6 0.9 86 860-946 90-176 (198)
142 3q7a_A Farnesyltransferase alp 98.8 1.8E-07 6E-12 94.5 19.1 134 769-907 105-256 (349)
143 4gcn_A Protein STI-1; structur 98.8 4.9E-08 1.7E-12 84.4 12.4 105 790-898 10-121 (127)
144 4gcn_A Protein STI-1; structur 98.8 1E-08 3.4E-13 88.8 7.9 103 824-927 9-117 (127)
145 3rkv_A Putative peptidylprolyl 98.8 3.2E-09 1.1E-13 97.2 5.0 125 825-950 13-156 (162)
146 1a17_A Serine/threonine protei 98.8 9.6E-08 3.3E-12 87.8 15.0 127 790-920 15-144 (166)
147 3sz7_A HSC70 cochaperone (SGT) 98.8 2.4E-08 8.3E-13 91.5 10.6 96 788-886 11-107 (164)
148 1elw_A TPR1-domain of HOP; HOP 98.8 2.1E-08 7.1E-13 85.9 9.6 103 825-929 6-108 (118)
149 3gw4_A Uncharacterized protein 98.8 2.7E-08 9.3E-13 95.2 11.3 155 730-885 4-174 (203)
150 2hr2_A Hypothetical protein; a 98.8 1.2E-08 4.2E-13 88.9 7.9 105 825-929 13-138 (159)
151 2vgx_A Chaperone SYCD; alterna 98.8 3.2E-08 1.1E-12 88.4 10.8 107 775-886 9-117 (148)
152 2c2l_A CHIP, carboxy terminus 98.8 1.6E-08 5.4E-13 102.1 9.6 196 717-924 3-201 (281)
153 2lni_A Stress-induced-phosphop 98.8 1.1E-07 3.6E-12 83.5 13.9 116 788-907 16-132 (133)
154 1p5q_A FKBP52, FK506-binding p 98.8 2.3E-08 7.8E-13 103.8 10.6 151 732-886 127-293 (336)
155 1a17_A Serine/threonine protei 98.8 1.9E-07 6.4E-12 85.8 15.8 128 754-885 14-144 (166)
156 2vyi_A SGTA protein; chaperone 98.7 1.5E-07 5.1E-12 82.2 14.1 118 823-942 12-130 (131)
157 2e2e_A Formate-dependent nitri 98.7 6E-08 2E-12 90.3 11.9 126 799-928 21-150 (177)
158 2fbn_A 70 kDa peptidylprolyl i 98.7 1.5E-08 5E-13 96.5 7.6 153 763-920 14-184 (198)
159 2kck_A TPR repeat; tetratricop 98.7 4.1E-08 1.4E-12 83.0 9.6 103 823-927 6-111 (112)
160 3upv_A Heat shock protein STI1 98.7 1.5E-07 5E-12 81.6 13.3 95 789-886 5-100 (126)
161 1na0_A Designed protein CTPR3; 98.7 3.1E-07 1.1E-11 79.3 15.4 111 824-936 10-121 (125)
162 2dba_A Smooth muscle cell asso 98.7 5.6E-08 1.9E-12 87.3 10.2 96 788-886 28-127 (148)
163 3dss_A Geranylgeranyl transfer 98.7 7.1E-07 2.4E-11 89.7 18.4 193 730-929 41-273 (331)
164 1dce_A Protein (RAB geranylger 98.7 1.3E-07 4.4E-12 104.8 14.4 171 769-944 45-244 (567)
165 3q49_B STIP1 homology and U bo 98.7 6.5E-08 2.2E-12 85.5 9.8 96 787-885 8-104 (137)
166 1wao_1 Serine/threonine protei 98.7 2.3E-08 8E-13 109.0 8.0 135 791-929 9-157 (477)
167 2if4_A ATFKBP42; FKBP-like, al 98.7 4.1E-08 1.4E-12 101.9 9.3 132 791-927 182-333 (338)
168 3gw4_A Uncharacterized protein 98.7 1.5E-07 5.1E-12 90.0 12.7 158 765-923 4-177 (203)
169 2xcb_A PCRH, regulatory protei 98.6 2.6E-07 8.8E-12 82.0 12.5 95 789-886 19-114 (142)
170 3k9i_A BH0479 protein; putativ 98.6 8.1E-09 2.8E-13 88.1 2.3 85 801-886 3-89 (117)
171 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 2.6E-08 8.9E-13 108.3 6.9 144 765-914 246-406 (457)
172 2xev_A YBGF; tetratricopeptide 98.6 1.1E-07 3.9E-12 82.8 9.6 91 793-886 7-104 (129)
173 1wao_1 Serine/threonine protei 98.6 7.7E-09 2.6E-13 112.8 2.0 124 825-950 8-134 (477)
174 1ihg_A Cyclophilin 40; ppiase 98.6 1.6E-08 5.4E-13 106.1 4.1 126 788-915 223-363 (370)
175 1elw_A TPR1-domain of HOP; HOP 98.6 1.1E-06 3.8E-11 74.8 15.2 109 789-901 5-114 (118)
176 2dba_A Smooth muscle cell asso 98.6 1.3E-06 4.4E-11 78.1 16.2 104 823-929 28-135 (148)
177 1dce_A Protein (RAB geranylger 98.6 4.2E-07 1.4E-11 100.7 15.4 204 735-946 46-291 (567)
178 3sz7_A HSC70 cochaperone (SGT) 98.6 3.5E-07 1.2E-11 83.6 12.2 103 824-928 12-114 (164)
179 3q49_B STIP1 homology and U bo 98.6 5.5E-07 1.9E-11 79.3 13.1 101 823-925 9-109 (137)
180 2if4_A ATFKBP42; FKBP-like, al 98.6 1.1E-07 3.7E-12 98.7 8.8 125 824-951 180-323 (338)
181 4b4t_Q 26S proteasome regulato 98.6 2.1E-06 7.3E-11 93.5 19.5 24 690-713 11-34 (434)
182 1hxi_A PEX5, peroxisome target 98.5 5E-07 1.7E-11 77.1 10.7 93 756-851 20-113 (121)
183 1elr_A TPR2A-domain of HOP; HO 98.5 6.6E-08 2.3E-12 84.5 5.3 114 788-905 4-124 (131)
184 1elr_A TPR2A-domain of HOP; HO 98.5 7E-07 2.4E-11 77.8 11.5 111 754-867 5-121 (131)
185 2xev_A YBGF; tetratricopeptide 98.5 1.8E-06 6.1E-11 75.0 13.9 101 827-929 6-112 (129)
186 3ro3_A PINS homolog, G-protein 98.5 2.3E-07 7.8E-12 84.9 8.1 134 790-923 11-159 (164)
187 2hr2_A Hypothetical protein; a 98.5 1.3E-06 4.6E-11 76.1 11.6 95 790-886 13-130 (159)
188 3rkv_A Putative peptidylprolyl 98.5 9.7E-07 3.3E-11 80.4 11.4 114 790-906 13-145 (162)
189 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 9.5E-07 3.2E-11 96.0 13.1 130 753-885 268-413 (457)
190 4b4t_Q 26S proteasome regulato 98.4 4.7E-06 1.6E-10 90.7 18.5 202 654-885 10-243 (434)
191 1ihg_A Cyclophilin 40; ppiase 98.4 1.9E-06 6.4E-11 90.3 13.7 121 755-879 225-362 (370)
192 2kck_A TPR repeat; tetratricop 98.4 2.2E-06 7.6E-11 72.1 11.9 94 790-886 8-105 (112)
193 3ro3_A PINS homolog, G-protein 98.4 1E-06 3.5E-11 80.4 10.0 133 754-886 10-157 (164)
194 2l6j_A TPR repeat-containing p 98.4 2.1E-07 7E-12 78.5 4.5 88 859-947 5-99 (111)
195 1zu2_A Mitochondrial import re 98.4 1.6E-07 5.6E-12 81.6 3.6 92 836-929 15-127 (158)
196 3k9i_A BH0479 protein; putativ 98.3 7.6E-07 2.6E-11 75.7 6.8 93 836-929 3-97 (117)
197 2l6j_A TPR repeat-containing p 98.3 1.4E-06 4.9E-11 73.2 8.2 96 822-920 3-105 (111)
198 1klx_A Cysteine rich protein B 98.2 4.3E-05 1.5E-09 66.7 15.1 110 768-888 10-127 (138)
199 1klx_A Cysteine rich protein B 98.2 5.7E-05 2E-09 65.9 15.1 111 732-853 9-127 (138)
200 1na3_A Designed protein CTPR2; 98.1 9.3E-07 3.2E-11 71.0 3.2 81 824-906 10-90 (91)
201 3n71_A Histone lysine methyltr 98.1 1.4E-05 4.8E-10 86.1 12.1 126 761-886 317-463 (490)
202 1zu2_A Mitochondrial import re 98.1 6.6E-06 2.3E-10 71.6 7.5 90 765-859 14-125 (158)
203 2kc7_A BFR218_protein; tetratr 98.1 1E-05 3.5E-10 66.0 8.2 92 827-929 4-97 (99)
204 2kat_A Uncharacterized protein 98.0 4.5E-06 1.5E-10 70.6 5.4 100 805-907 2-103 (115)
205 3n71_A Histone lysine methyltr 98.0 3E-05 1E-09 83.5 12.1 125 797-921 318-463 (490)
206 2kat_A Uncharacterized protein 98.0 4.2E-05 1.4E-09 64.4 10.1 79 770-851 2-81 (115)
207 1na3_A Designed protein CTPR2; 97.9 0.0001 3.5E-09 58.7 11.4 78 790-870 11-89 (91)
208 3ma5_A Tetratricopeptide repea 97.8 1.5E-05 5.3E-10 65.0 4.4 63 823-886 7-69 (100)
209 1pc2_A Mitochondria fission pr 97.8 2.9E-05 9.9E-10 66.6 6.0 88 840-929 15-107 (152)
210 3ly7_A Transcriptional activat 97.7 0.00031 1.1E-08 70.6 11.9 73 855-929 274-346 (372)
211 3ma5_A Tetratricopeptide repea 97.6 0.00019 6.7E-09 58.3 8.7 63 787-851 6-69 (100)
212 2v5f_A Prolyl 4-hydroxylase su 97.4 0.00018 6E-09 58.9 6.0 69 861-929 8-82 (104)
213 2kc7_A BFR218_protein; tetratr 97.4 0.00012 4.2E-09 59.4 5.1 66 863-929 5-71 (99)
214 3bee_A Putative YFRE protein; 97.4 0.00037 1.3E-08 55.1 7.1 64 822-886 5-71 (93)
215 1nzn_A CGI-135 protein, fissio 97.4 0.00026 8.8E-09 58.2 5.6 88 840-929 18-110 (126)
216 3qww_A SET and MYND domain-con 97.3 0.00064 2.2E-08 71.9 9.9 85 801-885 311-409 (433)
217 3ly7_A Transcriptional activat 97.2 0.0093 3.2E-07 60.0 16.3 74 785-862 274-347 (372)
218 3qww_A SET and MYND domain-con 97.2 0.0015 5.1E-08 69.0 11.0 87 765-851 310-410 (433)
219 3qwp_A SET and MYND domain-con 97.1 0.0032 1.1E-07 66.7 12.8 89 762-850 296-398 (429)
220 1pc2_A Mitochondria fission pr 97.1 0.0052 1.8E-07 52.7 11.1 81 769-851 14-99 (152)
221 3u64_A Protein TP_0956; tetrat 97.1 0.01 3.5E-07 57.0 14.3 84 839-926 179-273 (301)
222 3qwp_A SET and MYND domain-con 97.0 0.0042 1.4E-07 65.8 12.6 89 797-885 296-398 (429)
223 3u64_A Protein TP_0956; tetrat 97.0 0.034 1.2E-06 53.4 16.9 82 804-887 179-269 (301)
224 3bee_A Putative YFRE protein; 96.9 0.0067 2.3E-07 47.8 9.4 65 786-852 4-72 (93)
225 2v5f_A Prolyl 4-hydroxylase su 96.8 0.013 4.3E-07 47.7 10.6 77 822-899 4-86 (104)
226 3o48_A Mitochondria fission 1 96.6 0.0054 1.9E-07 50.4 6.9 74 855-929 37-114 (134)
227 1y8m_A FIS1; mitochondria, unk 96.4 0.0057 1.9E-07 51.1 6.1 72 856-928 37-112 (144)
228 1nzn_A CGI-135 protein, fissio 96.0 0.046 1.6E-06 45.0 9.7 81 769-851 17-102 (126)
229 3ffl_A Anaphase-promoting comp 95.8 0.018 6E-07 49.7 6.4 132 792-936 24-165 (167)
230 3lvg_A Clathrin heavy chain 1; 95.7 1.6E-05 5.6E-10 80.6 -14.2 140 401-563 53-192 (624)
231 3mkq_A Coatomer beta'-subunit; 95.7 0.27 9.2E-06 58.0 19.0 97 687-810 633-729 (814)
232 4b4t_P 26S proteasome regulato 95.6 1.2 4E-05 47.3 21.2 170 756-925 140-327 (445)
233 4h7y_A Dual specificity protei 95.5 0.26 8.9E-06 41.5 12.2 112 51-165 12-136 (161)
234 1wy6_A Hypothetical protein ST 95.5 0.45 1.5E-05 39.0 13.0 141 237-399 17-157 (172)
235 3mkq_B Coatomer subunit alpha; 95.3 1.1 3.6E-05 39.6 16.2 132 22-183 10-141 (177)
236 3mkq_A Coatomer beta'-subunit; 95.3 0.29 1E-05 57.6 17.2 183 692-913 608-803 (814)
237 4h7y_A Dual specificity protei 95.2 0.16 5.6E-06 42.7 10.0 53 767-820 74-126 (161)
238 1y8m_A FIS1; mitochondria, unk 95.2 0.46 1.6E-05 39.8 12.6 72 820-893 36-110 (144)
239 3o48_A Mitochondria fission 1 95.1 0.23 7.7E-06 41.0 10.3 72 820-893 37-111 (134)
240 3lvg_A Clathrin heavy chain 1; 94.7 0.0001 3.5E-09 75.0 -12.2 266 506-844 53-325 (624)
241 3mkq_B Coatomer subunit alpha; 94.7 2 6.8E-05 37.9 16.1 103 130-253 13-115 (177)
242 3txn_A 26S proteasome regulato 94.7 2 7E-05 44.0 18.8 27 649-675 20-46 (394)
243 1wy6_A Hypothetical protein ST 94.6 0.72 2.5E-05 37.8 11.9 48 764-814 18-65 (172)
244 4ady_A RPN2, 26S proteasome re 93.5 14 0.00046 42.6 45.4 173 700-885 471-656 (963)
245 4ady_A RPN2, 26S proteasome re 93.2 15 0.00052 42.2 50.6 55 481-535 383-439 (963)
246 1qsa_A Protein (soluble lytic 91.8 18 0.00061 39.9 34.1 200 697-917 228-437 (618)
247 3ffl_A Anaphase-promoting comp 91.4 1.3 4.4E-05 38.4 9.4 63 508-570 21-92 (167)
248 4b4t_P 26S proteasome regulato 90.6 19 0.00066 37.9 21.5 258 625-885 29-322 (445)
249 4gns_B Protein CSD3, chitin bi 90.3 1.4 4.9E-05 49.4 11.4 59 125-184 340-398 (754)
250 1qsa_A Protein (soluble lytic 89.8 27 0.00092 38.5 28.1 197 730-944 226-431 (618)
251 4gns_B Protein CSD3, chitin bi 89.4 1 3.5E-05 50.6 9.4 55 758-814 342-397 (754)
252 3ltm_A Alpha-REP4; protein eng 88.3 15 0.00053 33.7 16.9 109 786-906 93-201 (211)
253 3txn_A 26S proteasome regulato 87.9 26 0.0009 35.9 26.5 26 546-571 104-129 (394)
254 2ff4_A Probable regulatory pro 87.6 3.4 0.00012 42.8 11.4 70 790-861 173-248 (388)
255 3lpz_A GET4 (YOR164C homolog); 87.2 25 0.00084 34.9 22.2 190 31-254 10-214 (336)
256 1zbp_A Hypothetical protein VP 85.5 1.8 6.1E-05 41.0 7.0 123 797-929 6-136 (273)
257 2wpv_A GET4, UPF0363 protein Y 85.4 30 0.001 34.0 21.8 26 822-847 133-158 (312)
258 4b4t_R RPN7, 26S proteasome re 84.1 12 0.0004 39.4 13.6 98 754-851 132-236 (429)
259 2ff4_A Probable regulatory pro 83.6 5.8 0.0002 41.1 10.8 70 755-825 173-247 (388)
260 3ltm_A Alpha-REP4; protein eng 83.3 27 0.00094 32.0 17.6 170 682-871 32-201 (211)
261 1v54_E Cytochrome C oxidase po 81.9 5.5 0.00019 30.8 6.9 61 419-480 27-87 (109)
262 3lpz_A GET4 (YOR164C homolog); 81.8 43 0.0015 33.2 21.6 26 821-846 134-159 (336)
263 1oyz_A Hypothetical protein YI 81.5 40 0.0014 32.6 18.8 29 647-676 36-64 (280)
264 4fhn_B Nucleoporin NUP120; pro 81.3 21 0.0007 43.4 15.9 168 652-841 816-989 (1139)
265 2wpv_A GET4, UPF0363 protein Y 81.1 44 0.0015 32.8 21.6 135 32-181 12-158 (312)
266 4b4t_R RPN7, 26S proteasome re 79.2 14 0.00049 38.7 12.1 97 790-886 133-236 (429)
267 4fhn_B Nucleoporin NUP120; pro 78.3 46 0.0016 40.3 17.7 142 128-277 818-986 (1139)
268 1v54_E Cytochrome C oxidase po 77.3 8.1 0.00028 29.9 6.6 49 68-116 26-74 (109)
269 1zbp_A Hypothetical protein VP 77.3 2.3 8E-05 40.2 4.6 112 832-947 6-121 (273)
270 4b4t_S RPN3, 26S proteasome re 73.8 4.4 0.00015 42.8 6.1 68 858-928 231-305 (523)
271 2y69_E Cytochrome C oxidase su 71.6 25 0.00086 28.9 8.4 60 420-480 71-130 (152)
272 1oyz_A Hypothetical protein YI 71.6 75 0.0026 30.6 22.4 17 821-837 204-220 (280)
273 3kae_A CDC27, possible protein 69.9 22 0.00074 30.6 8.1 33 896-928 117-149 (242)
274 3esl_A Checkpoint serine/threo 63.9 69 0.0024 28.8 10.7 54 803-856 94-148 (202)
275 2y69_E Cytochrome C oxidase su 63.7 21 0.00073 29.4 6.6 44 71-114 72-115 (152)
276 3esl_A Checkpoint serine/threo 61.9 52 0.0018 29.6 9.5 83 739-822 58-149 (202)
277 3ubw_A 14-3-3E, 14-3-3 protein 57.6 58 0.002 30.7 9.4 41 688-728 36-76 (261)
278 3uzd_A 14-3-3 protein gamma; s 54.0 61 0.0021 30.3 9.0 40 689-728 10-49 (248)
279 3iqu_A 14-3-3 protein sigma; s 50.3 54 0.0019 30.4 7.9 40 689-728 14-53 (236)
280 2uwj_G Type III export protein 49.9 87 0.003 24.2 7.7 51 236-292 48-98 (115)
281 2p58_C Putative type III secre 48.2 94 0.0032 24.1 8.2 48 237-290 50-97 (116)
282 1o9d_A 14-3-3-like protein C; 46.8 79 0.0027 29.9 8.6 26 653-678 13-38 (260)
283 3eiq_C Programmed cell death p 46.0 1.8E+02 0.0061 29.2 11.6 74 405-479 220-295 (358)
284 4a1g_A Mitotic checkpoint seri 45.7 1.4E+02 0.0048 25.4 10.5 50 807-856 84-134 (152)
285 2npm_A 14-3-3 domain containin 45.0 1.6E+02 0.0053 27.9 10.3 21 692-712 37-57 (260)
286 2wvi_A Mitotic checkpoint seri 45.0 38 0.0013 29.4 5.7 50 772-821 79-129 (164)
287 2uwj_G Type III export protein 44.4 1.1E+02 0.0037 23.7 7.4 49 97-151 49-97 (115)
288 2wvi_A Mitotic checkpoint seri 44.1 1.6E+02 0.0054 25.5 10.4 50 807-856 79-129 (164)
289 2br9_A 14-3-3E, 14-3-3 protein 44.0 61 0.0021 30.1 7.3 29 690-718 12-40 (234)
290 2p58_C Putative type III secre 43.3 1.1E+02 0.0039 23.6 8.4 49 97-151 50-98 (116)
291 3eiq_C Programmed cell death p 39.5 2.3E+02 0.0079 28.4 11.3 62 336-398 221-284 (358)
292 3mv2_A Coatomer subunit alpha; 37.9 71 0.0024 31.2 7.0 24 863-886 212-235 (325)
293 2qx5_A Nucleoporin NIC96; mRNA 35.8 4.9E+02 0.017 28.8 23.2 21 408-428 300-320 (661)
294 4b4t_S RPN3, 26S proteasome re 35.8 3.7E+02 0.013 28.5 12.4 21 59-79 143-163 (523)
295 2qx5_A Nucleoporin NIC96; mRNA 35.1 5E+02 0.017 28.7 18.3 21 479-499 159-179 (661)
296 4a1g_A Mitotic checkpoint seri 34.3 2.2E+02 0.0074 24.3 11.2 52 770-821 82-134 (152)
297 2fu4_A Ferric uptake regulatio 33.9 81 0.0028 23.3 5.6 33 34-66 34-66 (83)
298 4aez_C MAD3, mitotic spindle c 32.5 57 0.0019 29.9 5.1 51 771-821 132-183 (223)
299 2d2s_A Exocyst complex compone 30.9 2.8E+02 0.0096 25.8 9.7 89 58-149 24-118 (235)
300 4aez_C MAD3, mitotic spindle c 29.9 1.5E+02 0.005 27.3 7.3 52 805-856 131-183 (223)
301 3uzd_A 14-3-3 protein gamma; s 28.9 3.6E+02 0.012 25.2 10.9 58 758-815 9-67 (248)
302 3ctd_A Putative ATPase, AAA fa 28.2 2.8E+02 0.0096 25.0 8.5 20 803-822 50-69 (213)
303 2d2s_A Exocyst complex compone 27.2 3.3E+02 0.011 25.2 9.6 88 94-184 25-118 (235)
304 2r9g_A AAA ATPase, central reg 26.6 3.5E+02 0.012 24.2 9.6 53 732-785 28-85 (204)
305 2nsz_A Programmed cell death p 26.3 2.5E+02 0.0085 23.0 7.7 24 406-429 11-34 (129)
306 1ya0_A SMG-7 transcript varian 26.1 3.1E+02 0.011 29.1 10.3 78 790-870 154-232 (497)
307 2ijq_A Hypothetical protein; s 25.4 1.9E+02 0.0065 24.9 6.8 49 66-114 46-102 (161)
308 1ya0_A SMG-7 transcript varian 24.8 3E+02 0.01 29.2 9.9 79 755-835 154-232 (497)
309 2b7e_A PRE-mRNA processing pro 24.6 94 0.0032 21.3 3.7 35 34-68 3-38 (59)
310 2w57_A Ferric uptake regulatio 24.4 88 0.003 26.7 4.8 35 32-66 32-66 (150)
311 3bu8_A Telomeric repeat-bindin 23.2 3.8E+02 0.013 24.3 8.3 48 104-151 89-143 (235)
312 2ijq_A Hypothetical protein; s 23.0 2.1E+02 0.0073 24.6 6.6 53 764-816 43-103 (161)
313 3pvs_A Replication-associated 22.7 6.6E+02 0.023 26.1 12.5 153 627-781 166-358 (447)
314 2crb_A Nuclear receptor bindin 21.1 1.5E+02 0.0051 22.4 4.5 25 861-885 18-42 (97)
315 2o8p_A 14-3-3 domain containin 20.3 5E+02 0.017 23.8 14.3 161 759-921 12-196 (227)
316 2ion_A PDCD4, programmed cell 20.3 2.2E+02 0.0075 24.3 6.3 24 406-429 13-36 (152)
317 3kae_A CDC27, possible protein 20.3 4.3E+02 0.015 22.9 12.6 21 796-816 70-90 (242)
318 3ax2_A Mitochondrial import re 20.1 39 0.0013 24.4 1.3 31 898-928 22-52 (73)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-37 Score=357.84 Aligned_cols=505 Identities=10% Similarity=-0.026 Sum_probs=380.1
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048794 365 PDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLL 444 (967)
Q Consensus 365 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 444 (967)
++...|+.++..|.+.|++++|..+++.+... .|+..++..++.+|.+.|++++|...|+++... .++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 34555666666666666666666666666543 345555555666666666666666666655332 34555666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHh
Q 048794 445 SGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVK 524 (967)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 524 (967)
.+|.+.|++++|.++|+++... +.. ...+...+ -...+.+.+..+|..++..|.+.|+++
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~----~~~-----~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPF----RKD-----EKNANKLL-----------MQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTT----C--------------------------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhHHHHHHHHhccCCc----ccc-----cccccccc-----------ccccccchhHHHHHHHHHHHHHcCCHH
Confidence 6666666666666655532111 100 00000000 011223345778888899999999999
Q ss_pred HHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHH---HHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHH
Q 048794 525 DAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRL---AKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAE 601 (967)
Q Consensus 525 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (967)
+|+..|+++.+..|.+...+..++..+...+..+.+... +.....
T Consensus 218 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~-------------------------------- 265 (597)
T 2xpi_A 218 RAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK-------------------------------- 265 (597)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHG--------------------------------
T ss_pred HHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCccccc--------------------------------
Confidence 999999999888888888877777666554333222110 000000
Q ss_pred HHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 048794 602 KLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAP 681 (967)
Q Consensus 602 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 681 (967)
.+......++..++..|.+.|++++|..+|+++... +++..++..++..+.+.|++++|+.+|+++.+.++ .
T Consensus 266 ----~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~ 337 (597)
T 2xpi_A 266 ----EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-Y 337 (597)
T ss_dssp ----GGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred ----chHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-c
Confidence 000000111223356678899999999999988654 57899999999999999999999999999998763 4
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHH
Q 048794 682 DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLID 761 (967)
Q Consensus 682 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 761 (967)
+..++..++.++.+.|++++|..+++++.... +.+..++..++..|.+.|++++|..+|+++.... +.+..++..++.
T Consensus 338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 415 (597)
T 2xpi_A 338 NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAH 415 (597)
T ss_dssp CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 77889999999999999999999999998764 5577889999999999999999999999998863 456678999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048794 762 GLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDD 841 (967)
Q Consensus 762 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 841 (967)
+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|+++|+++++. .+.+..++..++.+|.+.|++++
T Consensus 416 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 493 (597)
T 2xpi_A 416 SFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL-FQYDPLLLNELGVVAFNKSDMQT 493 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999999864 447889999999999999999999999999984 23357899999999999999999
Q ss_pred HHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHh
Q 048794 842 ALHYFEELKLN----GLDAD--TISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKL 915 (967)
Q Consensus 842 A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 915 (967)
|.++|+++++. +..|+ ..++..++.+|.+.|++++|.+.++++.+. .+.+..+|..++.++.+.|++++|+++
T Consensus 494 A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~ 572 (597)
T 2xpi_A 494 AINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL-STNDANVHTAIALVYLHKKIPGLAITH 572 (597)
T ss_dssp HHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999864 55676 789999999999999999999999999975 355789999999999999999999999
Q ss_pred hcCCCcCCCCcccc-ccceeeecc
Q 048794 916 AGGNCFVQPSEFVS-SELQVIYAE 938 (967)
Q Consensus 916 ~~~~l~~~p~~~~~-~~l~~~~~~ 938 (967)
++++++++|+++.+ ..|+++|.+
T Consensus 573 ~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 573 LHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHhcCCCChHHHHHHHHHHhc
Confidence 99999999999998 688888764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.7e-36 Score=346.24 Aligned_cols=489 Identities=10% Similarity=-0.035 Sum_probs=340.4
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 048794 331 NVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLID 410 (967)
Q Consensus 331 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 410 (967)
+...|+.++..+.+.|++++|..+|+++... .|+..++..++.+|...|++++|..+++.+... +++..+++.++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence 4445555566666666666666666655532 345555555666666666666666666655432 445556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHh---------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHH
Q 048794 411 TLYKADRVDEAWEMFCRMKD---------------MKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTF 475 (967)
Q Consensus 411 ~~~~~~~~~~A~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 475 (967)
+|.+.|++++|..+|+++.. .+...+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHH
Confidence 66666666666666653221 1223457788888888888888888888888887753 3345555
Q ss_pred HHHHHHHHhcCCHHHHHHH---HHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHH
Q 048794 476 NTLLHCLCKNEEVDLAMKM---LYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVV 552 (967)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 552 (967)
..+...+...+..+.+... +..+...+..+...++..++..|.+.|++++|..+|+++.+. +++..++..++..+.
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHH
Confidence 5555444333222221111 222322222222334444566677788888888888877765 567777777777777
Q ss_pred hcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHH
Q 048794 553 KDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAK 632 (967)
Q Consensus 553 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 632 (967)
+.|++++|++.+++++...
T Consensus 317 ~~g~~~~A~~~~~~~~~~~------------------------------------------------------------- 335 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEID------------------------------------------------------------- 335 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC-------------------------------------------------------------
T ss_pred HhcCHHHHHHHHHHHHHcC-------------------------------------------------------------
Confidence 7777777777766655332
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 048794 633 DLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFR 712 (967)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 712 (967)
+.+..++..++..+.+.|++++|..+++++.+.. +.+..++..++.+|.+.|++++|+.+|+++...
T Consensus 336 ------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 402 (597)
T 2xpi_A 336 ------------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM 402 (597)
T ss_dssp ------------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2344456667777778888888888888887653 346777888888888888888888888888775
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048794 713 GCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYN 792 (967)
Q Consensus 713 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 792 (967)
. +.+..++..++.+|...|++++|++.|+++...+ +.+..++..++.+|.+.|++++|+++|+++.+.. +.+..+|+
T Consensus 403 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 479 (597)
T 2xpi_A 403 D-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLN 479 (597)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 3 4456788888888888888888888888888764 4456678888889999999999999999988764 34678899
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048794 793 ILINGFGKTGDVETACELFKQMIKG----GIRPD--LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMIN 866 (967)
Q Consensus 793 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 866 (967)
.++.+|.+.|++++|+++|+++++. +..|+ ..++..++.+|.+.|++++|...++++++.+ +.+..++..++.
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~ 558 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIAL 558 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 9999999999999999999998774 55777 6788899999999999999999999988754 447788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 048794 867 GLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLG 904 (967)
Q Consensus 867 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 904 (967)
+|...|++++|.+.++++++. .|.+...+..++.+|.
T Consensus 559 ~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 559 VYLHKKIPGLAITHLHESLAI-SPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhc-CCCChHHHHHHHHHHh
Confidence 999999999999999999874 3445577777776553
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=8.3e-30 Score=275.89 Aligned_cols=380 Identities=15% Similarity=0.077 Sum_probs=292.8
Q ss_pred HHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhH
Q 048794 480 HCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIED 559 (967)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 559 (967)
..+...|++++|.+.+..+...+ +.+...+..+...+...|++++|...++.+.+..|.+..++..++..+...|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 34445555555555555555443 22334444455555555666666666655555555555555555555555555555
Q ss_pred HHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHH
Q 048794 560 AFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFT 639 (967)
Q Consensus 560 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 639 (967)
|++.+++++..
T Consensus 86 A~~~~~~al~~--------------------------------------------------------------------- 96 (388)
T 1w3b_A 86 AIEHYRHALRL--------------------------------------------------------------------- 96 (388)
T ss_dssp HHHHHHHHHHH---------------------------------------------------------------------
T ss_pred HHHHHHHHHHc---------------------------------------------------------------------
Confidence 55555544322
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChh
Q 048794 640 ENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTI 719 (967)
Q Consensus 640 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 719 (967)
.|.+...+..++..+...|++++|+..|+++++.+ +.+...+..++..+...|++++|...|+++.... +.+..
T Consensus 97 ----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 170 (388)
T 1w3b_A 97 ----KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAV 170 (388)
T ss_dssp ----CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHH
Confidence 14455667778888888888888888888888764 2245567778888889999999999999988764 44567
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 048794 720 SHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFG 799 (967)
Q Consensus 720 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 799 (967)
++..++.++...|++++|+..|++++..+ +.....+..++.++...|++++|+..|+++++.. +.+..++..++.++.
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 248 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYY 248 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHH
Confidence 88888999999999999999999998864 4456678889999999999999999999998863 235778999999999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048794 800 KTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEAL 878 (967)
Q Consensus 800 ~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 878 (967)
..|++++|+..|+++++. .|+ ..++..++.++.+.|++++|...++++++.. +.+..++..++.++...|++++|.
T Consensus 249 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 325 (388)
T 1w3b_A 249 EQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp HTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999984 565 6789999999999999999999999999763 557888999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCC
Q 048794 879 SLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPR 941 (967)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~ 941 (967)
..++++++. .|.+..++..++.++.+.|++++|+..++++++++|+++.+ +.+|.+|.+.|+
T Consensus 326 ~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 326 RLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999864 44556889999999999999999999999999999999988 688988887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.5e-27 Score=258.07 Aligned_cols=382 Identities=12% Similarity=0.045 Sum_probs=249.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHh
Q 048794 445 SGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVK 524 (967)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 524 (967)
..+.+.|++++|.+.+..+.... |.+...+..+...+...|++++|...++..+..+ +.+...+..++..+...|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 34455666666666666665542 3344555555566666666666666666665553 335566666666677777777
Q ss_pred HHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHH
Q 048794 525 DAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLV 604 (967)
Q Consensus 525 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (967)
+|+..|+++.+..|.+..++..++..+...|++++|++.+++++...
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------------------------- 131 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--------------------------------- 131 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC---------------------------------
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------------------
Confidence 77777777766666666666666666666676666666666554332
Q ss_pred hcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHh
Q 048794 605 CNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDIS 684 (967)
Q Consensus 605 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 684 (967)
+.....+..++..+...|++++|+..|+++++.. +.+..
T Consensus 132 ----------------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 170 (388)
T 1w3b_A 132 ----------------------------------------PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAV 170 (388)
T ss_dssp ----------------------------------------TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ----------------------------------------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHH
Confidence 2223344455555566666666666666666543 22455
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHH
Q 048794 685 TYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLS 764 (967)
Q Consensus 685 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 764 (967)
++..++..+...|++++|+..|+++...+ +.+...+..++.++...|++++|+..+++++... +.+..++..++.+|.
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 248 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYY 248 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHH
Confidence 66666777777777777777777776653 3345566666777777777777777777766653 334556677777777
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048794 765 KSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALH 844 (967)
Q Consensus 765 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 844 (967)
..|++++|+..|+++.+.. +.+..+|..++.++.+.|++++|+..|+++++. .+++..++..++.++...|++++|..
T Consensus 249 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~ 326 (388)
T 1w3b_A 249 EQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVR 326 (388)
T ss_dssp HTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777777753 224557777777777777888888888877764 13346677777777777788888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 048794 845 YFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGM 908 (967)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 908 (967)
.++++++.. +.+..++..++.+|.+.|++++|.+.++++++. .|....++..++.++...|+
T Consensus 327 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 327 LYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHhHHHHHHHccC
Confidence 887777642 345667777777888888888888888877753 23345777777777766653
No 5
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.96 E-value=1.1e-22 Score=232.13 Aligned_cols=831 Identities=12% Similarity=0.131 Sum_probs=477.3
Q ss_pred HHHHHHccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 048794 5 FDLMQKQIINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIK 84 (967)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 84 (967)
+..-.+-|+|..-..|..-|..+...|++++|-.+-..... |+-.++.+.+.+-++-...|+..-.+..|..+.+.| +
T Consensus 349 ~~~a~r~~lpGad~l~~~~F~~l~~~g~y~~AA~~aa~sp~-giLRt~~ti~rfk~~~~~pgq~~pll~YF~~ll~~g-~ 426 (1630)
T 1xi4_A 349 LRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-Q 426 (1630)
T ss_pred HHHHHhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcC-C
Confidence 34456778888888888889999999999998777666543 223356666666555555666666666666666665 3
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHH-----cC--C-CCc----------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 048794 85 PSLKTYSALMVAAGKRRNIKTVMNLLEEMER-----LG--L-RPN----------VYTFTICIRILGRAGKIDEAYRILK 146 (967)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~--~-~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~ 146 (967)
.+..----+++....+|+.+-....+.+=+- .| + +.+ ..+..-.+.++++.|+++++..+.+
T Consensus 427 Ln~~eSlEl~r~vl~q~r~~lle~Wl~e~KL~~SEeLGDlv~~~d~~lAl~iY~~a~~~~Kvi~~l~~~gq~~ki~~Y~~ 506 (1630)
T 1xi4_A 427 LNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANVPNKVIQCFAETGQVQKIVLYAK 506 (1630)
T ss_pred CcHHHHHHHHHHHHHhchHHHHHHHHHhCCccccHHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHhCCHHHHHHHHh
Confidence 4443333344444444444433333322100 00 0 000 0111234556666666666666644
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-
Q 048794 147 RMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAA- 225 (967)
Q Consensus 147 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~- 225 (967)
+ .|..|| |..+++.+.+. +++.|.++...+.+.. |........+..+...+...++..++-+..+.+-+.
T Consensus 507 ~---~~~~pD---y~~ll~~~~~~-~P~~~~~fa~~L~~~~--~p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~ 577 (1630)
T 1xi4_A 507 K---VGYTPD---WIFLLRNVMRI-SPDQGQQFAQMLVQDE--EPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSE 577 (1630)
T ss_pred c---cCCCcc---HHHHHHHHhhc-ChHHHHHHHHHHhcCC--CCccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhh
Confidence 3 233333 34555555544 4666666666665442 123334455566666666666666665555443211
Q ss_pred ----------------------------cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhcC
Q 048794 226 ----------------------------DVVTYTIFVDALCKVGNVEEAFSILDLMRGE--GILPNLHTYNTLICGLLRL 275 (967)
Q Consensus 226 ----------------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~ 275 (967)
+...+..+...|-+.|-++.|++.|.++..- -+.-+...-...+..|...
T Consensus 578 ~~LQTrlle~Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~~fg~ 657 (1630)
T 1xi4_A 578 GPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGS 657 (1630)
T ss_pred hhHhHHHHHHhhccchhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHHHHhc
Confidence 2223445566777788888888877644321 0000000001122233333
Q ss_pred CCHHHHHHHHHHHHHcCCCC----------------------------------------------CHHHHHHHHHHHhh
Q 048794 276 DRVEEALEVFNNMEILGVQP----------------------------------------------TAYTYILFIDYYGK 309 (967)
Q Consensus 276 ~~~~~a~~~~~~~~~~~~~~----------------------------------------------~~~~~~~l~~~~~~ 309 (967)
=..+.+++.+..|...+++. |+......+.++++
T Consensus 658 l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~~s~d~~vhfkyi~aa~~ 737 (1630)
T 1xi4_A 658 LSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACK 737 (1630)
T ss_pred CCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 44566666666665433222 33344444555555
Q ss_pred cCChhhHHHHHHH------------HHHcCCCCCc---------c-cHHHHHHHHHhcCCHH------------HHHHHH
Q 048794 310 SADPGKALETFEK------------MKIRGIVPNV---------V-SCNASLYSLAETGRIG------------EAKTIF 355 (967)
Q Consensus 310 ~~~~~~a~~~~~~------------~~~~~~~~~~---------~-~~~~l~~~~~~~g~~~------------~a~~~~ 355 (967)
.|+..+..++.++ +++.. -||. . ....++.-+.+++..+ .+-.+.
T Consensus 738 ~~q~~everi~res~~y~~e~vk~flk~~k-l~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vv 816 (1630)
T 1xi4_A 738 TGQIKEVERICRESNCYDPERVKNFLKEAK-LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVI 816 (1630)
T ss_pred hCCchhhhHHhccCCCCCHHHHHHHHhhCC-CCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhh
Confidence 5555555444322 11110 0110 0 0011111111111111 111111
Q ss_pred HHHHHCCCCCCHHHHH-------------HHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-HHHH
Q 048794 356 NGLKNSGFAPDSVTYN-------------MMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADR-VDEA 421 (967)
Q Consensus 356 ~~~~~~~~~~~~~~~~-------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A 421 (967)
..+.+. .-+..... .|+...-+.++..--...++.-+..| ..++.++|+|+..|...++ ++.-
T Consensus 817 g~lld~--d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~f 893 (1630)
T 1xi4_A 817 GGLLDV--DCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERF 893 (1630)
T ss_pred hhhhcC--CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHH
Confidence 111100 00111111 22222222233333334455555555 4577788888888876543 3331
Q ss_pred HH--------HHHHH-HhCCCCCCHHHH------HHHHHHHHhcCCHHH-HH-----------------------HHHHH
Q 048794 422 WE--------MFCRM-KDMKLAPTVVTY------NTLLSGLGKEGQVQK-AI-----------------------ELFEG 462 (967)
Q Consensus 422 ~~--------~~~~~-~~~~~~~~~~~~------~~l~~~~~~~g~~~~-a~-----------------------~~~~~ 462 (967)
+. +..+. .++++..-...| .-++..+.+++-+.. |. .+.+.
T Consensus 894 L~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidq 973 (1630)
T 1xi4_A 894 LRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQ 973 (1630)
T ss_pred hhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHH
Confidence 11 01111 111111000001 112222222222221 11 11111
Q ss_pred HHhCCC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCC--CCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcC
Q 048794 463 MTDHGC--FPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNC--WPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLY 538 (967)
Q Consensus 463 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 538 (967)
.....+ ..++.-.....++|...|.+.+|+++++++.-.+. ..+...-+.++.+..+. +.....++..+..+.
T Consensus 974 v~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-- 1050 (1630)
T 1xi4_A 974 VVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-- 1050 (1630)
T ss_pred HHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc--
Confidence 111111 12333445566777788888888888888874321 12223334444444444 334444444443321
Q ss_pred CChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHH-
Q 048794 539 PDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVP- 617 (967)
Q Consensus 539 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 617 (967)
....++..+...|.+++|..+|+++-. ...
T Consensus 1051 ----d~~eIA~Iai~lglyEEAf~IYkKa~~---------------------------------------------~~~A 1081 (1630)
T 1xi4_A 1051 ----DAPDIANIAISNELFEEAFAIFRKFDV---------------------------------------------NTSA 1081 (1630)
T ss_pred ----cHHHHHHHHHhCCCHHHHHHHHHHcCC---------------------------------------------HHHH
Confidence 133477778888999999888887411 111
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccC
Q 048794 618 IIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSG 697 (967)
Q Consensus 618 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 697 (967)
+...+...+++++|.++..++ .++.+|..++.++...|++++|++.|.+. .+...|..++..+.+.|
T Consensus 1082 ~~VLie~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lG 1148 (1630)
T 1xi4_A 1082 VQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG 1148 (1630)
T ss_pred HHHHHHHHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcC
Confidence 122233778899999998876 45788999999999999999999999553 36777888999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHH
Q 048794 698 RVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFE 777 (967)
Q Consensus 698 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 777 (967)
++++|+++|..+.+.. +++.....++.+|.+.+++++.... ++ .++...+..++..|...|++++|..+|.
T Consensus 1149 kyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~ 1219 (1630)
T 1xi4_A 1149 NWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYN 1219 (1630)
T ss_pred CHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999888764 3333344588889999888753333 22 3344567789999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048794 778 EMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDAD 857 (967)
Q Consensus 778 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 857 (967)
.+ ..|..++.+|.+.|++++|++.++++. +..+|..+..+|...|++..|...... +..+
T Consensus 1220 kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~ 1279 (1630)
T 1xi4_A 1220 NV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVH 1279 (1630)
T ss_pred hh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcC
Confidence 86 378899999999999999999999873 447888899999999999999887664 2345
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHh--cCCHHHHHHhhcCCCcCCC-----Ccccc
Q 048794 858 TISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSLILNLGR--AGMVEEARKLAGGNCFVQP-----SEFVS 929 (967)
Q Consensus 858 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~--~g~~~~A~~~~~~~l~~~p-----~~~~~ 929 (967)
+..+..++..|.+.|.+++|+++++..+. +++.. ..+..|+.++.+ -++..++.++|.+-+.+.| ++...
T Consensus 1280 ~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~l 1357 (1630)
T 1xi4_A 1280 ADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHL 1357 (1630)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHH
Confidence 66678899999999999999999999984 44443 666666666665 4789999999998888888 55553
Q ss_pred -ccceeeeccCCCccccc
Q 048794 930 -SELQVIYAENPRATSLS 946 (967)
Q Consensus 930 -~~l~~~~~~~g~~~~~~ 946 (967)
..+..+|.+.|+|+.|.
T Consensus 1358 W~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1358 WAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHhcccHHHHH
Confidence 68889999999998876
No 6
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.96 E-value=2.5e-21 Score=220.96 Aligned_cols=825 Identities=14% Similarity=0.118 Sum_probs=503.6
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 048794 40 LEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLR 119 (967)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 119 (967)
+.-+.+.|.+-....|..-...+...|+|.+|..+.-...+ |+--+..|.+..-.+=...|+..-....|.-+.+.| +
T Consensus 349 ~~~a~r~~lpGad~l~~~~F~~l~~~g~y~~AA~~aa~sp~-giLRt~~ti~rfk~~~~~pgq~~pll~YF~~ll~~g-~ 426 (1630)
T 1xi4_A 349 LRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-Q 426 (1630)
T ss_pred HHHHHhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcC-C
Confidence 33344444443445666667778889999999888766643 455666677766666667788888888888888877 5
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CC-----CCCC--------HHHHHHHHHHHHhcCChHHHHHHHH
Q 048794 120 PNVYTFTICIRILGRAGKIDEAYRILKRMDD-----EG-----CGPD--------VVTYTVLIDALCTAGRLDQAKEIFL 181 (967)
Q Consensus 120 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~ 181 (967)
.|..--.-+++....+|+.+-..+++.+-.- .| ..++ ..+...++.++++.|.++++..+-+
T Consensus 427 Ln~~eSlEl~r~vl~q~r~~lle~Wl~e~KL~~SEeLGDlv~~~d~~lAl~iY~~a~~~~Kvi~~l~~~gq~~ki~~Y~~ 506 (1630)
T 1xi4_A 427 LNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANVPNKVIQCFAETGQVQKIVLYAK 506 (1630)
T ss_pred CcHHHHHHHHHHHHHhchHHHHHHHHHhCCccccHHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHhCCHHHHHHHHh
Confidence 6665555566666666666666655553210 00 0010 1123567778888888888887755
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-
Q 048794 182 KMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILP- 260 (967)
Q Consensus 182 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~- 260 (967)
+ .|..|| |..|+..+.+. +++.+.++...+.+.. +.......++..+...+.+.++..++-+..+.+-+-
T Consensus 507 ~---~~~~pD---y~~ll~~~~~~-~P~~~~~fa~~L~~~~--~p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~ 577 (1630)
T 1xi4_A 507 K---VGYTPD---WIFLLRNVMRI-SPDQGQQFAQMLVQDE--EPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSE 577 (1630)
T ss_pred c---cCCCcc---HHHHHHHHhhc-ChHHHHHHHHHHhcCC--CCccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhh
Confidence 4 455665 55677777654 5888888877777653 244556778899999999999999887776654221
Q ss_pred ----------------------------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCCCC-HHHHHHHHHHHhh
Q 048794 261 ----------------------------NLHTYNTLICGLLRLDRVEEALEVFNNMEIL--GVQPT-AYTYILFIDYYGK 309 (967)
Q Consensus 261 ----------------------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~-~~~~~~l~~~~~~ 309 (967)
+..-+..+...|-+.|-+..|++.+.++..- -+..+ ...-..++ .|..
T Consensus 578 ~~LQTrlle~Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~-~~fg 656 (1630)
T 1xi4_A 578 GPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLV-NYFG 656 (1630)
T ss_pred hhHhHHHHHHhhccchhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHH-HHHh
Confidence 1222455667788889999999988755321 01100 00111222 2333
Q ss_pred cCChhhHHHHHHHHHHcCCCCCcccHH-------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048794 310 SADPGKALETFEKMKIRGIVPNVVSCN-------------ASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKC 376 (967)
Q Consensus 310 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (967)
.=..+.+.+.++.|...++..+....- .++..+-+.+.++...-.+..+.. ...|..+....|++
T Consensus 657 ~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~--~s~d~~vhfkyi~a 734 (1630)
T 1xi4_A 657 SLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVN--FSQDPDVHFKYIQA 734 (1630)
T ss_pred cCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhcc--ccCChHHHHHHHHH
Confidence 456778888888887654443333322 233333333334433333333332 24466667777888
Q ss_pred HHHcCChhHHHHHHHH------------HHHCCCCCChh----------hHHH------------HHHHHHhcCCHHHHH
Q 048794 377 YSKVGQVDEAVTLLSE------------MVENGCEPDVI----------VMNT------------LIDTLYKADRVDEAW 422 (967)
Q Consensus 377 ~~~~~~~~~a~~~~~~------------~~~~~~~~~~~----------~~~~------------l~~~~~~~~~~~~A~ 422 (967)
+++.|++.+.+++.++ +.+.. -+|.. .... .|..|...-++..+-
T Consensus 735 a~~~~q~~everi~res~~y~~e~vk~flk~~k-l~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p 813 (1630)
T 1xi4_A 735 ACKTGQIKEVERICRESNCYDPERVKNFLKEAK-LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLP 813 (1630)
T ss_pred HHHhCCchhhhHHhccCCCCCHHHHHHHHhhCC-CCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccc
Confidence 8888877766665443 11111 01100 0111 122222211111111
Q ss_pred HHHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC-HHH
Q 048794 423 EMFCRMKDMKLA-----------PTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEE-VDL 490 (967)
Q Consensus 423 ~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~ 490 (967)
.+...+.+.+.. ........|+..+-+.++..--...++.-...| ..++.++++|+..|..+++ .+.
T Consensus 814 ~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~ 892 (1630)
T 1xi4_A 814 VVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPER 892 (1630)
T ss_pred hhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHH
Confidence 111111110000 001113445555555555555555555555554 2355555555555553322 221
Q ss_pred H---------HHHHHhhccCCC----------CCC---------HHHHHHHHHHHhhcCcHhHHH-----------HHHH
Q 048794 491 A---------MKMLYEMTPRNC----------WPD---------VLTYNTIIYGLVKEQRVKDAI-----------WFFH 531 (967)
Q Consensus 491 A---------~~~~~~~~~~~~----------~~~---------~~~~~~l~~~~~~~g~~~~A~-----------~~~~ 531 (967)
- .-+=+-..++++ ..| ...|......+.+..+.+--. .+.+
T Consensus 893 fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lid 972 (1630)
T 1xi4_A 893 FLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLID 972 (1630)
T ss_pred HhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHH
Confidence 0 000000001100 001 111222222222222222111 1222
Q ss_pred HHHhh---cCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhh-hhhhhcccCCCcchHHHHHHHHhcC
Q 048794 532 QMRKW---LYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQD-LVGGILTVAGPDKSILFAEKLVCNG 607 (967)
Q Consensus 532 ~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (967)
..... ...++.-.....++|...|.+.+|++++++++.....-.+-..... ++..-++. .+.....+...+-
T Consensus 973 qv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd--- 1048 (1630)
T 1xi4_A 973 QVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD--- 1048 (1630)
T ss_pred HHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh---
Confidence 21111 1233444556778888999999999999999965441112222222 33333333 2223233322221
Q ss_pred CCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHH
Q 048794 608 ICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYN 687 (967)
Q Consensus 608 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 687 (967)
......++..+...|.+++|..+|+++ .....+...+ +...+++++|.+++++.. +..+|.
T Consensus 1049 ----~~d~~eIA~Iai~lglyEEAf~IYkKa------~~~~~A~~VL---ie~i~nldrAiE~Aervn------~p~vWs 1109 (1630)
T 1xi4_A 1049 ----NYDAPDIANIAISNELFEEAFAIFRKF------DVNTSAVQVL---IEHIGNLDRAYEFAERCN------EPAVWS 1109 (1630)
T ss_pred ----hccHHHHHHHHHhCCCHHHHHHHHHHc------CCHHHHHHHH---HHHHhhHHHHHHHHHhcC------CHHHHH
Confidence 122455889999999999999999887 1222222222 337788999999887652 477888
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC
Q 048794 688 LLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSG 767 (967)
Q Consensus 688 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 767 (967)
.++.++...|++++|++.|.++ .|...+..++.++.+.|++++|++.+..+.+.. +++.....++.+|.+.+
T Consensus 1110 qLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1110 QLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTN 1181 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhc
Confidence 9999999999999999999774 366788899999999999999999999988764 33334445899999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048794 768 RLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFE 847 (967)
Q Consensus 768 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 847 (967)
++++...+ ++ .++...|..++..+...|++++|..+|.++ ..|..++.+|.+.|++++|.+.++
T Consensus 1182 rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1182 RLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred CHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 98853333 33 356677888999999999999999999986 268999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcc
Q 048794 848 ELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEF 927 (967)
Q Consensus 848 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 927 (967)
++ .+..+|..+..+|...|++..|..+.... ..+++.+..++..|.+.|.+++|+.++++++.++|.|.
T Consensus 1246 KA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~ 1314 (1630)
T 1xi4_A 1246 KA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLERAHM 1314 (1630)
T ss_pred Hh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHh
Confidence 87 34578999999999999999999887643 34677777999999999999999999999999999998
Q ss_pred cc-ccceeeecc
Q 048794 928 VS-SELQVIYAE 938 (967)
Q Consensus 928 ~~-~~l~~~~~~ 938 (967)
.. ..|+.+|.+
T Consensus 1315 gmftELaiLyaK 1326 (1630)
T 1xi4_A 1315 GMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHHHHh
Confidence 86 356666643
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=7.5e-25 Score=247.61 Aligned_cols=275 Identities=11% Similarity=-0.090 Sum_probs=233.9
Q ss_pred HHHHHHHHHHHHh---cCChHHHHHHHHHHHH-----c--CC------CcCHhhHHHHHHHHHccCChHHHHHHHHHHHh
Q 048794 648 LEMYNYLIHGLLE---VHATEMGLDLFTTMKN-----A--GC------APDISTYNLLLDGYGKSGRVEELLKLYEEMSF 711 (967)
Q Consensus 648 ~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~-----~--~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 711 (967)
...+...+..+.. .|++++|+..|+++++ . .+ +.+..++..++..+...|++++|+.+|+++..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555555555554 8999999999999987 3 11 12355778889999999999999999999998
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048794 712 RGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIY 791 (967)
Q Consensus 712 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 791 (967)
..+ +..++..++.++...|++++|...+++++... +.+..++..++.+|...|++++|+..++++.+.. +.+..++
T Consensus 266 ~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 341 (514)
T 2gw1_A 266 LFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPY 341 (514)
T ss_dssp HCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHH
T ss_pred hCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHH
Confidence 753 37788899999999999999999999999874 4456688899999999999999999999999864 3367799
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHH
Q 048794 792 NILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGL-DAD----TISYNFMI 865 (967)
Q Consensus 792 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~ 865 (967)
..++.++...|++++|+..++++++. .|+ ..++..++.++...|++++|...++++++... .+. ...+..++
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 419 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKA 419 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 99999999999999999999999884 454 67899999999999999999999999986321 111 34788999
Q ss_pred HHHHh---cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 866 NGLGR---SGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 866 ~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.++.. .|++++|...++++++. .+.+..++..++.++...|++++|...++++++++|+++..
T Consensus 420 ~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 420 TLLTRNPTVENFIEATNLLEKASKL-DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp HHHHTSCCTTHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred HHHhhhhhcCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHH
Confidence 99999 99999999999999975 45567889999999999999999999999999999999986
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.5e-23 Score=236.83 Aligned_cols=454 Identities=10% Similarity=-0.036 Sum_probs=299.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 048794 404 VMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLC 483 (967)
Q Consensus 404 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 483 (967)
.+...+..+.+.|++++|+..|+++.... |+..++..++.++...|++++|+..++++.+.+ +.+..++..++.++.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 34455555666666666666666665543 455666666666666666666666666665542 334555556666666
Q ss_pred hcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhh--cCCChhHHHhHHHHHHhcCChhHHH
Q 048794 484 KNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKW--LYPDHITLCTLLPGVVKDGQIEDAF 561 (967)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 561 (967)
..|++++|...|+.+...+. ++.......+..+........+...+..+... .+++........ .
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~----------- 151 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE-R----------- 151 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhH-H-----------
Confidence 66666666666666655542 22222223332222222222222222111110 000000000000 0
Q ss_pred HHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHh---hccHHHHHHHHHHH
Q 048794 562 RLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCR---QKKALAAKDLFVKF 638 (967)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~ 638 (967)
....+..+...........+-...... .-..+.+.......+..+.. .|++++|...|++.
T Consensus 152 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 152 ------KDKQENLPSVTSMASFFGIFKPELTFA----------NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCCS----------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred ------HhhccCCchhHHHHHHHhhcCHHHHHH----------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 000000111110000000000000000 00001223334455555554 89999999999999
Q ss_pred HH-----hcCC-------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHH
Q 048794 639 TE-----NLGV-------TSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLY 706 (967)
Q Consensus 639 ~~-----~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 706 (967)
+. .... +....++..++..+...|++++|+..|+++++..+. ..++..++.++...|++++|+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77 2112 234567788899999999999999999999987543 788899999999999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 048794 707 EEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKP 786 (967)
Q Consensus 707 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 786 (967)
+++.... +.+..++..++.++...|++++|+..+++++... +.+...+..++.++...|++++|+..++++.+.. +.
T Consensus 294 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 370 (514)
T 2gw1_A 294 DKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PE 370 (514)
T ss_dssp HHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-cc
Confidence 9999875 4467788999999999999999999999999874 3456688899999999999999999999999863 33
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCC
Q 048794 787 NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-------LKSYSVLVDCLCM---VGRVDDALHYFEELKLNGLDA 856 (967)
Q Consensus 787 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~ 856 (967)
+..++..++.++...|++++|+..|+++++. .|+ ..++..++.++.. .|++++|...++++++.. +.
T Consensus 371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~ 447 (514)
T 2gw1_A 371 APEVPNFFAEILTDKNDFDKALKQYDLAIEL--ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PR 447 (514)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cc
Confidence 6779999999999999999999999999873 232 3388999999999 999999999999999753 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHH
Q 048794 857 DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSL 899 (967)
Q Consensus 857 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l 899 (967)
+..++..++.++...|++++|...++++++. .|+. ..+..+
T Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~ 489 (514)
T 2gw1_A 448 SEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEEKLQAI 489 (514)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHHHHHHH
Confidence 6788899999999999999999999999974 4554 555444
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.1e-23 Score=233.18 Aligned_cols=286 Identities=12% Similarity=0.038 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCh---hhH---
Q 048794 648 LEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNT---ISH--- 721 (967)
Q Consensus 648 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~--- 721 (967)
..++..++..+...|++++|+..|+++++.+ +.+..++..++.++...|++++|+..|+++.... +.+. ..+
T Consensus 60 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l 137 (450)
T 2y4t_A 60 YIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQL 137 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHH
Confidence 3334444444444444444444444444432 1234444445555555555555555555554432 1111 222
Q ss_pred ---------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048794 722 ---------NIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYN 792 (967)
Q Consensus 722 ---------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 792 (967)
...+..+...|++++|+..+++++... +.+..++..++.+|.+.|++++|+..|+++.+.. +.+..+|.
T Consensus 138 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 215 (450)
T 2y4t_A 138 IKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFY 215 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 233555778899999999999888763 4566778889999999999999999999998753 34677899
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC--
Q 048794 793 ILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVL------------VDCLCMVGRVDDALHYFEELKLNGLDAD-- 857 (967)
Q Consensus 793 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 857 (967)
.++.+|...|++++|+..|+++++ ..|+ ...+..+ +.++...|++++|..+|+++++. .|+
T Consensus 216 ~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~ 291 (450)
T 2y4t_A 216 KISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIA 291 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcch
Confidence 999999999999999999999987 4565 4444444 88999999999999999999874 343
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccce
Q 048794 858 ---TISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQ 933 (967)
Q Consensus 858 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~ 933 (967)
..++..++.++.+.|++++|+..++++++. .+.+..+|..++.++...|++++|+..++++++++|+++.. ..++
T Consensus 292 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 292 EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 347888999999999999999999999864 35567999999999999999999999999999999999987 5777
Q ss_pred ------------eeeccCCCc
Q 048794 934 ------------VIYAENPRA 942 (967)
Q Consensus 934 ------------~~~~~~g~~ 942 (967)
.+|...|..
T Consensus 371 ~~~~~~~~~~~~~~y~~lg~~ 391 (450)
T 2y4t_A 371 KAQRLLKQSQKRDYYKILGVK 391 (450)
T ss_dssp HHHHHHHHHHSCCSGGGSCSS
T ss_pred HHHHHhhcccchhHHHHhCCC
Confidence 778888843
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=2.1e-23 Score=237.05 Aligned_cols=443 Identities=11% Similarity=0.005 Sum_probs=305.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHH
Q 048794 437 VVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYG 516 (967)
Q Consensus 437 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 516 (967)
...+..+...+.+.|++++|+..|+++.... +.+..++..+..++...|++++|.+.+++++..+ +.+...+..++..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3556666667777777777777777777652 4466667777777777777777777777776654 2356666667777
Q ss_pred HhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcch
Q 048794 517 LVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKS 596 (967)
Q Consensus 517 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (967)
+...|++++|...|+ .....|.....+ +..+...+....|++.++..+...+....
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~-------------------- 158 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGDFDGAS---IEPMLERNLNKQAMKVLNENLSKDEGRGS-------------------- 158 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred HHHcCCHHHHHHHHH-HHhcCCCCChHH---HHHHHHHHHHHHHHHHHHHHHHhCccccc--------------------
Confidence 777777777777775 333222222211 22333444455666666655443221111
Q ss_pred HHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHH--------hcCChHHH
Q 048794 597 ILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTST-LEMYNYLIHGLL--------EVHATEMG 667 (967)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~--------~~~~~~~A 667 (967)
........+..+....+...+...+.+. ....+. ......+...+. ..+++++|
T Consensus 159 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A 221 (537)
T 3fp2_A 159 --------------QVLPSNTSLASFFGIFDSHLEVSSVNTS---SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS 221 (537)
T ss_dssp --------------CCCCCHHHHHHHHHTSCHHHHHHTSCCC---CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHH
T ss_pred --------------cccchHhHHHHHHHhcChHHHHHHHhhc---cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 0011122334444444444443333221 111111 112333333322 23478999
Q ss_pred HHHHHHHHHcCCCcC------HhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048794 668 LDLFTTMKNAGCAPD------ISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLF 741 (967)
Q Consensus 668 ~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 741 (967)
+..|+++++..+... ..++..++..+...|++++|+..|+++... .|+..++..++.++...|++++|+..+
T Consensus 222 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~ 299 (537)
T 3fp2_A 222 TDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFF 299 (537)
T ss_dssp HHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred HHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999987643211 235777788889999999999999999987 455778888999999999999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 048794 742 YNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRP 821 (967)
Q Consensus 742 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 821 (967)
++++... +.+..++..++.++...|++++|+..++++.+.. +.+..+|..++.++...|++++|+..++++++. .|
T Consensus 300 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~ 375 (537)
T 3fp2_A 300 QKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FP 375 (537)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 9999874 4556789999999999999999999999999864 335678999999999999999999999999984 45
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHH
Q 048794 822 D-LKSYSVLVDCLCMVGRVDDALHYFEELKLNG-----LDADTISYNFMINGLGRS----------GRIEEALSLFDEMK 885 (967)
Q Consensus 822 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~ 885 (967)
+ ..++..++.++...|++++|...++++++.. .......+..++.++... |++++|...+++++
T Consensus 376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 455 (537)
T 3fp2_A 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455 (537)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHH
Confidence 5 6788999999999999999999999988531 111223456677888888 99999999999999
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 886 KRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 886 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
+. .|.+..++..++.++...|++++|+..++++++++|+++..
T Consensus 456 ~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 456 EL-DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred Hh-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 75 45567899999999999999999999999999999998886
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.6e-23 Score=231.92 Aligned_cols=360 Identities=12% Similarity=0.032 Sum_probs=232.4
Q ss_pred CHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhh
Q 048794 506 DVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVG 585 (967)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (967)
+...+..++..+.+.|++++|+..|+++.+..|.+..++..++..+...|++++|+..+++++...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 90 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-------------- 90 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 344555555556666666666666666665555556666666666666666666655555544332
Q ss_pred hhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 048794 586 GILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATE 665 (967)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 665 (967)
+.+..++..++..+...|+++
T Consensus 91 -----------------------------------------------------------p~~~~~~~~l~~~~~~~g~~~ 111 (450)
T 2y4t_A 91 -----------------------------------------------------------MDFTAARLQRGHLLLKQGKLD 111 (450)
T ss_dssp -----------------------------------------------------------TTCHHHHHHHHHHHHHTTCHH
T ss_pred -----------------------------------------------------------CCcHHHHHHHHHHHHHcCCHH
Confidence 222333444444444444444
Q ss_pred HHHHHHHHHHHcCCCcC-H---hhH------------HHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 048794 666 MGLDLFTTMKNAGCAPD-I---STY------------NLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLV 729 (967)
Q Consensus 666 ~A~~~~~~~~~~~~~~~-~---~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 729 (967)
+|+..|+++.+.. |+ . ..+ ..++..+...|++++|+.+|+++.... +.+..++..++.+|.
T Consensus 112 ~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 188 (450)
T 2y4t_A 112 EAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFI 188 (450)
T ss_dssp HHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 4444444444432 21 1 222 223445777788888888888877664 445667777777888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH------------HHH
Q 048794 730 KSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNIL------------ING 797 (967)
Q Consensus 730 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l------------~~~ 797 (967)
..|++++|+..|++++... +.+..++..++.+|...|++++|+..|+++.+.. +.+...+..+ +.+
T Consensus 189 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~ 266 (450)
T 2y4t_A 189 KEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEE 266 (450)
T ss_dssp HTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888777652 3455677777888888888888888888887653 2234444444 777
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048794 798 FGKTGDVETACELFKQMIKGGIRPD-----LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSG 872 (967)
Q Consensus 798 ~~~~~~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 872 (967)
+...|++++|+..|+++++ ..|+ ...+..++.++.+.|++++|+..++++++.. +.+..++..++.+|...|
T Consensus 267 ~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~ 343 (450)
T 2y4t_A 267 LIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEE 343 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 8888888888888888887 3555 3467778888888888888888888887643 446778888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHH------------HHhcC-----CHHHHHHhhcC-CCcCCCCccc------
Q 048794 873 RIEEALSLFDEMKKRGISPDLYTYNSLILN------------LGRAG-----MVEEARKLAGG-NCFVQPSEFV------ 928 (967)
Q Consensus 873 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-~l~~~p~~~~------ 928 (967)
++++|...++++++. .|.+..++..++.+ +...| +.+++.+.+++ ++...|++..
T Consensus 344 ~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~ 422 (450)
T 2y4t_A 344 MYDEAIQDYETAQEH-NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKK 422 (450)
T ss_dssp CHHHHHHHHHHHHTT-SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHH
T ss_pred CHHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHH
Confidence 888888888888863 23345666666633 33334 55677777776 7777777643
Q ss_pred -c----ccceeeeccCCCcccccc
Q 048794 929 -S----SELQVIYAENPRATSLSH 947 (967)
Q Consensus 929 -~----~~l~~~~~~~g~~~~~~~ 947 (967)
+ ..++..|...||-+.+..
T Consensus 423 ~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 423 KAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp HHHHHHHHHHHHHHHSSGGGGC--
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHh
Confidence 1 267777777777766443
No 12
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.93 E-value=2.9e-24 Score=234.03 Aligned_cols=185 Identities=16% Similarity=0.207 Sum_probs=102.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHhCCCCCCHHHH
Q 048794 90 YSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAG---------KIDEAYRILKRMDDEGCGPDVVTY 160 (967)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~~~~~~~~~~~~~ 160 (967)
++.+|.+|++.|++++|.++|++|...|++||..+|+.++.+|++.+ .++.|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 33344444444444444444444444444444444444444443332 245555666666655666666666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhc
Q 048794 161 TVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKV 240 (967)
Q Consensus 161 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (967)
+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 66666666666666666666666655566666666666666666666666666666666556666666666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 048794 241 GNVEEAFSILDLMRGEGILPNLHTYNTLICGLLR 274 (967)
Q Consensus 241 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 274 (967)
|++++|.++|++|++.+..|+..||+.++..+..
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666665556666666655555543
No 13
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.92 E-value=3.7e-24 Score=233.29 Aligned_cols=207 Identities=15% Similarity=0.233 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------h
Q 048794 104 KTVMNLLEEMERLGLRPN-VYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGR---------L 173 (967)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 173 (967)
..+..+.+.+.+.+.... ..++..++..|++.|++++|+++|++|.+.|+.||..+|+.||.+|.+.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 344555566666655443 345788899999999999999999999999999999999999999987654 6
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 174 DQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLM 253 (967)
Q Consensus 174 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 253 (967)
++|.++|++|...|+.||..||++++.+|++.|++++|.+++++|...|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 048794 254 RGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKS 310 (967)
Q Consensus 254 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 310 (967)
.+.|+.||..+|+.||.+|++.|++++|.+++++|...+..|+..|+..++..|...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999998887653
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=1e-23 Score=239.66 Aligned_cols=437 Identities=14% Similarity=0.078 Sum_probs=326.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHH
Q 048794 471 NTVTFNTLLHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPG 550 (967)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 550 (967)
....+..+...+...|++++|...|++++..+ +.+...+..++.++...|++++|+..|+++.+..|.+..++..++..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 34667788889999999999999999998876 34788889999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHH
Q 048794 551 VVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALA 630 (967)
Q Consensus 551 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 630 (967)
+...|++++|++.++ .+...+.. ....+..+...+....
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~ 141 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGDF----------------------------------------DGASIEPMLERNLNKQ 141 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------------------------------------------CHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH-HHhcCCCC----------------------------------------ChHHHHHHHHHHHHHH
Confidence 999999999999885 44332111 1112345556666677
Q ss_pred HHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHh-hHHHHHHHHH--------ccCChH
Q 048794 631 AKDLFVKFTENLGVT-STLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDIS-TYNLLLDGYG--------KSGRVE 700 (967)
Q Consensus 631 a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~--------~~g~~~ 700 (967)
|...+.+.+...+.. .........+..+....+.+.+...+...... .+... ....+...+. ..|+++
T Consensus 142 a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 219 (537)
T 3fp2_A 142 AMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLT 219 (537)
T ss_dssp HHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 888887775432110 00011122233344455555554443332221 12211 2223332322 235899
Q ss_pred HHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHH
Q 048794 701 ELLKLYEEMSFRGCKPNT-------ISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAK 773 (967)
Q Consensus 701 ~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 773 (967)
+|+.+|+++.... +.+. .++..++..+...|++++|...+++++... |+...+..++.++...|++++|+
T Consensus 220 ~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~ 296 (537)
T 3fp2_A 220 KSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFF 296 (537)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHH
T ss_pred HHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHH
Confidence 9999999999874 2232 246677788889999999999999999874 33778899999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 774 KLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
..++++.+.. +.+..++..++.++...|++++|+..|+++++. .|+ ..++..++.++...|++++|...++++++.
T Consensus 297 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 297 KFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373 (537)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999864 346779999999999999999999999999984 555 578999999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHhHHHHHHHHHhc----------CCHHHHHHhh
Q 048794 853 GLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD------LYTYNSLILNLGRA----------GMVEEARKLA 916 (967)
Q Consensus 853 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~----------g~~~~A~~~~ 916 (967)
. +.+..++..++.++...|++++|...++++++.. +.+ ...+..++.++... |++++|+..+
T Consensus 374 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~ 451 (537)
T 3fp2_A 374 F-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE-EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451 (537)
T ss_dssp C-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHH
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHH
Confidence 3 4567789999999999999999999999988531 111 12355667888888 9999999999
Q ss_pred cCCCcCCCCcccc-ccceeeeccCCCcccccchhhhhhcccccc
Q 048794 917 GGNCFVQPSEFVS-SELQVIYAENPRATSLSHKHCEYLASSCTF 959 (967)
Q Consensus 917 ~~~l~~~p~~~~~-~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~ 959 (967)
+++++.+|+++.+ ..+|.+|...|++++|...+.+.+..+|..
T Consensus 452 ~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 452 TKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 9999999999988 699999999999999988555656555543
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=3.3e-21 Score=206.25 Aligned_cols=312 Identities=11% Similarity=0.016 Sum_probs=233.4
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccC
Q 048794 618 IIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSG 697 (967)
Q Consensus 618 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 697 (967)
++..+...|++++|...|.+++.. .+.+..++..++..+...|++++|+..++++++.. +.+..++..++.++...|
T Consensus 9 ~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 9 LGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcC
Confidence 334444444444444444444332 23455667777777777777777777777777653 225566777777777788
Q ss_pred ChHHHHHHHHHHHhCCCC--CChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHH
Q 048794 698 RVEELLKLYEEMSFRGCK--PNTISHNIV------------ISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGL 763 (967)
Q Consensus 698 ~~~~A~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 763 (967)
++++|+..|+++....+. .+...+..+ +..+...|++++|+..+++++... +.+...+..++.++
T Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 164 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECF 164 (359)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 888888888877766310 233333333 577888999999999999988864 45567888899999
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHH------------HHH
Q 048794 764 SKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYS------------VLV 830 (967)
Q Consensus 764 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~------------~l~ 830 (967)
...|++++|+..++++.+.. +.+..++..++.++...|++++|+..++++++. .|+ ..++. .++
T Consensus 165 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 165 IKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998864 346778999999999999999999999999884 455 33332 337
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 048794 831 DCLCMVGRVDDALHYFEELKLNGLDADT----ISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRA 906 (967)
Q Consensus 831 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 906 (967)
.++...|++++|...++++++.. +.+. ..+..++.++...|++++|...++++.+. .|.+..++..++.++...
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 319 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEAYLIE 319 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHc
Confidence 78899999999999999998753 2233 33556889999999999999999999875 455678999999999999
Q ss_pred CCHHHHHHhhcCCCcCCCCcccc-ccceeeecc
Q 048794 907 GMVEEARKLAGGNCFVQPSEFVS-SELQVIYAE 938 (967)
Q Consensus 907 g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~ 938 (967)
|++++|+..++++++++|+++.. ..|+.++..
T Consensus 320 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 320 EMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 99999999999999999999886 466555443
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=4.6e-20 Score=197.33 Aligned_cols=211 Identities=9% Similarity=0.023 Sum_probs=166.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCC
Q 048794 689 LLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGR 768 (967)
Q Consensus 689 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 768 (967)
++..+...|++++|+.+++++.... +.+..++..++.++...|++++|...+++++... +.+...+..++.++...|+
T Consensus 126 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 126 QALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3677888888999999988888764 4466778888888888899999999988888763 4556778888888999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHH------------HHHHHHhccCCHHHHHHHHHHHHhCCCCCC-H----HHHHHHHH
Q 048794 769 LEEAKKLFEEMLDYGCKPNCVIYN------------ILINGFGKTGDVETACELFKQMIKGGIRPD-L----KSYSVLVD 831 (967)
Q Consensus 769 ~~~A~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~----~~~~~l~~ 831 (967)
+++|+..++++.+.. +.+...+. .++..+...|++++|+..++++++. .|+ . ..+..++.
T Consensus 204 ~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 204 HELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICH 280 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHH
Confidence 999999999888753 22333333 3377788999999999999999884 454 2 33566889
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 048794 832 CLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRA 906 (967)
Q Consensus 832 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 906 (967)
++...|++++|...++++++.. +.+..++..++.++...|++++|...++++++. .|.+..++..+..+....
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH-NENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHH
Confidence 9999999999999999999853 447888999999999999999999999999964 333457777777666544
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=2e-19 Score=200.19 Aligned_cols=270 Identities=12% Similarity=0.041 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCChh
Q 048794 648 LEMYNYLIHGLLE----VHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGK----SGRVEELLKLYEEMSFRGCKPNTI 719 (967)
Q Consensus 648 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 719 (967)
+.++..++..|.. .+++++|+..|++..+.+ +..++..++..|.. .+++++|+.+|+++...+ +..
T Consensus 147 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 220 (490)
T 2xm6_A 147 DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DEL 220 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHH
Confidence 3344444444444 556666666666666542 45556666666665 566666666666666543 445
Q ss_pred hHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048794 720 SHNIVISGLVK----SNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSK----SGRLEEAKKLFEEMLDYGCKPNCVIY 791 (967)
Q Consensus 720 ~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 791 (967)
++..++..|.. .+++++|..+|+++...+ +...+..++.+|.. .+++++|+..|+++.+.+ +...+
T Consensus 221 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~ 294 (490)
T 2xm6_A 221 GQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQ 294 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHH
Confidence 55556666654 566666766666666542 23355556666665 666777777777766542 45566
Q ss_pred HHHHHHHhcc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048794 792 NILINGFGKT-----GDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVG---RVDDALHYFEELKLNGLDADTISYNF 863 (967)
Q Consensus 792 ~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~ 863 (967)
..++.+|... +++++|+..|+++.+.| +..++..++.+|...| ++++|+++|+++.+. .++.++..
T Consensus 295 ~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~ 368 (490)
T 2xm6_A 295 YYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFN 368 (490)
T ss_dssp HHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred HHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHH
Confidence 6666666655 67777777777766632 3456666666666645 566777777777664 24556666
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHhhcCCCcCCCC---cccc-cc
Q 048794 864 MINGLGR----SGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGR----AGMVEEARKLAGGNCFVQPS---EFVS-SE 931 (967)
Q Consensus 864 l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~---~~~~-~~ 931 (967)
|+.+|.. .+++++|..+|+++.+.+ ++..+..|+.++.. .+++++|..+++++++.+|+ ++.+ ..
T Consensus 369 Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~ 445 (490)
T 2xm6_A 369 LGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNIT 445 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHH
Confidence 7777666 667777777777766532 45666667777666 66777777777777777643 5555 46
Q ss_pred ceeeecc
Q 048794 932 LQVIYAE 938 (967)
Q Consensus 932 l~~~~~~ 938 (967)
|+.++..
T Consensus 446 l~~~~~~ 452 (490)
T 2xm6_A 446 EKKLTAK 452 (490)
T ss_dssp HTTSCHH
T ss_pred HHhcCHh
Confidence 6665543
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=8.3e-21 Score=200.35 Aligned_cols=293 Identities=12% Similarity=0.004 Sum_probs=244.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 048794 645 TSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIV 724 (967)
Q Consensus 645 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 724 (967)
+.+...+..++..+...|++++|+.+|+++++.. +.+...+..++..+...|++++|+.+++++.... +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4455566777778888888999999988888764 3355667778888889999999999999998874 4466788888
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 048794 725 ISGLVKSN-SIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGD 803 (967)
Q Consensus 725 ~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 803 (967)
+..+...| ++++|...+++++... +.....+..++.++...|++++|+..++++.+.. +.+..++..++.+|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 99999999 9999999999999874 4456678899999999999999999999999864 3356778889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCH
Q 048794 804 VETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNG--------LDADTISYNFMINGLGRSGRI 874 (967)
Q Consensus 804 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~ 874 (967)
+++|+..++++++. .|+ ..++..++.++...|++++|...++++++.. .+....++..++.++...|++
T Consensus 175 ~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 175 SKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 99999999999984 454 6889999999999999999999999998521 133457889999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeee-ccCCCccc
Q 048794 875 EEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIY-AENPRATS 944 (967)
Q Consensus 875 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~-~~~g~~~~ 944 (967)
++|...++++++. .+.+..++..++.++...|++++|..+++++++++|+++.+ ..++..+ ...|+.+.
T Consensus 253 ~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 253 AEALDYHRQALVL-IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp HHHHHHHHHHHHH-STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC---
T ss_pred HHHHHHHHHHHhh-CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchhc
Confidence 9999999999975 34566899999999999999999999999999999999988 6899888 66666544
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=9.4e-19 Score=194.75 Aligned_cols=391 Identities=12% Similarity=0.006 Sum_probs=267.9
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHhhccCCCCCCH
Q 048794 436 TVVTYNTLLSGLGK----EGQVQKAIELFEGMTDHGCFPNTVTFNTLLHCLCK----NEEVDLAMKMLYEMTPRNCWPDV 507 (967)
Q Consensus 436 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 507 (967)
+...+..+...|.. .+++++|...+++..+.| +...+..+...|.. .+++++|...+++..+.+ +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44455555555554 556666666666555542 34445555555555 556666666666655543 44
Q ss_pred HHHHHHHHHHhh----cCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHh----cCChhHHHHHHHHHHhhcCCCcchhh
Q 048794 508 LTYNTIIYGLVK----EQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVK----DGQIEDAFRLAKCSIYQIGTRAERQF 579 (967)
Q Consensus 508 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 579 (967)
..+..++..|.. .+++++|+..|++..+. .++..+..++..|.. .+++++|++.++
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~-------------- 175 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYS-------------- 175 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH--------------
Confidence 455555555555 55666666666655442 234444444444443 344444444444
Q ss_pred HhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 048794 580 WQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLL 659 (967)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 659 (967)
+.... .++.++..++..|.
T Consensus 176 ---------------------------------------------------------~a~~~----~~~~a~~~Lg~~y~ 194 (490)
T 2xm6_A 176 ---------------------------------------------------------KAAEQ----GNVWSCNQLGYMYS 194 (490)
T ss_dssp ---------------------------------------------------------HHHHT----TCHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------HHHHC----CCHHHHHHHHHHHh
Confidence 33221 24556666666666
Q ss_pred h----cCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-
Q 048794 660 E----VHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGK----SGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVK- 730 (967)
Q Consensus 660 ~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 730 (967)
. .+++++|+..|++..+.+ +..++..++..|.. .+++++|+.+|+++...+ +..++..+...|..
T Consensus 195 ~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 195 RGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQG 268 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHT
T ss_pred cCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCC
Confidence 6 778888888888888753 56677778888775 788899999999888764 45667777777877
Q ss_pred ---cCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcC-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 048794 731 ---SNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKS-----GRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTG 802 (967)
Q Consensus 731 ---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 802 (967)
.+++++|+.+|+++.+.+ +...+..++..|... +++++|+..|+++.+.+ +...+..++.+|...|
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 788999999999988753 345677788888877 89999999999998853 5678888888887756
Q ss_pred ---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 048794 803 ---DVETACELFKQMIKGGIRPDLKSYSVLVDCLCM----VGRVDDALHYFEELKLNGLDADTISYNFMINGLGR----S 871 (967)
Q Consensus 803 ---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 871 (967)
++++|+..|+++.+. .+...++.++.+|.. .+++++|..+|+++.+.+ ++.++..|+.+|.. .
T Consensus 343 ~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCC
Confidence 789999999999884 467788999999988 889999999999998854 56778889999988 8
Q ss_pred CCHHHHHHHHHHHHHcCCC-C-CHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 872 GRIEEALSLFDEMKKRGIS-P-DLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 872 g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
+++++|...|+++.+.+.. | +......++..+. .+.+.|++...+.++..|++...
T Consensus 417 ~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~--~~~~~a~~~a~~~~~~~~~~~~~ 474 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA--KQLQQAELLSQQYIEKYAPEAWA 474 (490)
T ss_dssp CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH--HHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875432 2 3355555555433 34566666666666666776665
No 20
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=7.4e-19 Score=195.62 Aligned_cols=380 Identities=12% Similarity=-0.060 Sum_probs=239.5
Q ss_pred CCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhh---------cCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCc
Q 048794 505 PDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKW---------LYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRA 575 (967)
Q Consensus 505 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 575 (967)
.....++.++..+...|++++|++.|++..+. .+....++..++..|...|++++|...+++++.......
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34566778888888888888888888887643 233456678888999999999999999888765421111
Q ss_pred chhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHH--HhhccHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 048794 576 ERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLF--CRQKKALAAKDLFVKFTENLGVTSTLEMYNY 653 (967)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 653 (967)
. ...+....+...++..+ ...+++++|...|++.+... |.++..+..
T Consensus 129 ~-----------------------------~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~ 177 (472)
T 4g1t_A 129 S-----------------------------PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSG 177 (472)
T ss_dssp C-----------------------------SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHH
T ss_pred c-----------------------------ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 0 00111122333344444 34568899999999987754 445566655
Q ss_pred HHHH---HHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHH----ccCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 048794 654 LIHG---LLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYG----KSGRVEELLKLYEEMSFRGCKPNTISHNIVIS 726 (967)
Q Consensus 654 l~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 726 (967)
++.. +...++.++|++.+++.++.+ +.+..++..++..+. ..|++++|..+++++.... +.+..++..++.
T Consensus 178 ~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~ 255 (472)
T 4g1t_A 178 LAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAK 255 (472)
T ss_dssp HHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHH
Confidence 5544 345677788999998888764 235555655655544 3467889999999988774 456677888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcC-------------------CCHHHHHHHHHHHHHCCCCCC
Q 048794 727 GLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKS-------------------GRLEEAKKLFEEMLDYGCKPN 787 (967)
Q Consensus 727 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~~~~~~~~~~ 787 (967)
.|...|++++|+..++++++.. +.+..++..++.+|... +.++.|+..++++.+.. +.+
T Consensus 256 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 333 (472)
T 4g1t_A 256 FYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNL 333 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTT
T ss_pred HHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cch
Confidence 9999999999999999988863 44556677777666432 23567777888877753 224
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048794 788 CVIYNILINGFGKTGDVETACELFKQMIKGGIRPDL----KSYSVLVDC-LCMVGRVDDALHYFEELKLNGLDADTISYN 862 (967)
Q Consensus 788 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 862 (967)
..++..++.+|...|++++|+..|+++++. .|+. ..+..++.. +...|++++|+..|+++++. .|+.....
T Consensus 334 ~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~ 409 (472)
T 4g1t_A 334 FRVCSILASLHALADQYEEAEYYFQKEFSK--ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE 409 (472)
T ss_dssp CCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH
T ss_pred hhhhhhHHHHHHHhccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH
Confidence 457788888888888999999999888874 3442 234445543 34678888899988888874 44432221
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccce
Q 048794 863 FMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQ 933 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~ 933 (967)
+....+..++++.++. .|.++.+|..++.++...|++++|++.+++++++.|.+|.+ ..+|
T Consensus 410 ---------~~~~~l~~~~~~~l~~-~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 410 ---------KMKDKLQKIAKMRLSK-NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp ---------HHHHHHHHHHHHHHHH-CC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred ---------HHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 1223445566666653 45566888899999999999999999999999999988886 4554
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.1e-18 Score=184.13 Aligned_cols=296 Identities=13% Similarity=0.025 Sum_probs=249.0
Q ss_pred CCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhH
Q 048794 607 GICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTY 686 (967)
Q Consensus 607 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 686 (967)
+.+.+..+...++..+...|++++|...|++++... +.+...+..++..+...|++++|+..++++++.. +.+..++
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 93 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSW 93 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHH
Confidence 346677888899999999999999999999998764 3445566677788899999999999999999875 3367788
Q ss_pred HHHHHHHHccC-ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHc
Q 048794 687 NLLLDGYGKSG-RVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSK 765 (967)
Q Consensus 687 ~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 765 (967)
..++..+...| ++++|+..|+++.... +.+..++..++.++...|++++|+..+++++... +.....+..++..|..
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHH
Confidence 89999999999 9999999999999875 4467789999999999999999999999999874 3345677789999999
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcC
Q 048794 766 SGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGG--------IRPDLKSYSVLVDCLCMVG 837 (967)
Q Consensus 766 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g 837 (967)
.|++++|+..++++.+.. +.+..++..++.++...|++++|+..++++++.. .+....++..++.++...|
T Consensus 172 ~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 999999999999999864 3467799999999999999999999999998731 0223578999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH-HhcCCHH
Q 048794 838 RVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNL-GRAGMVE 910 (967)
Q Consensus 838 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 910 (967)
++++|...++++++.. +.+..++..++.++...|++++|...++++++. .|.+...+..++.++ ...|+.+
T Consensus 251 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 251 KYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL-RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT-CSCCHHHHHHHHHHHHTTTTC--
T ss_pred CHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc-CCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999754 446788999999999999999999999999864 344568888999988 4556643
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=5.6e-18 Score=190.59 Aligned_cols=298 Identities=9% Similarity=0.058 Sum_probs=216.2
Q ss_pred hhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-------------HhcCChHHHHHHHHH------HHHcC---CCc
Q 048794 624 RQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGL-------------LEVHATEMGLDLFTT------MKNAG---CAP 681 (967)
Q Consensus 624 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~A~~~~~~------~~~~~---~~~ 681 (967)
..|+.+.|..+|++.+.. +.......+....... ...++++.|..++.. ..+.. ++|
T Consensus 142 ~~~~~~~a~~~y~~al~~-P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 142 ENQRITAVRRVYQRGCVN-PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp HHHHHHHHHHHHHHHTTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred HHhHHHHHHHHHHHHHhc-hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 468888999999888762 2111123333222211 134567777777665 22221 233
Q ss_pred C--------HhhHHHHHHHHHcc----CCh----HHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-------cCCHH---
Q 048794 682 D--------ISTYNLLLDGYGKS----GRV----EELLKLYEEMSFRGCKPNTISHNIVISGLVK-------SNSID--- 735 (967)
Q Consensus 682 ~--------~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~--- 735 (967)
+ ...|...+...... ++. +.++.+|++++... +.+...|..++..+.. .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 3 23444444332221 232 47888999998873 4567788888888775 68876
Q ss_pred ----HHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHhccCCHHHHHH
Q 048794 736 ----KAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPN-C-VIYNILINGFGKTGDVETACE 809 (967)
Q Consensus 736 ----~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~A~~ 809 (967)
+|..+++++++.-.+.....+..++..+.+.|++++|..+|+++++. .|+ . .+|..++..+.+.|++++|.+
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 89999999997423556778889999999999999999999999985 443 3 589999999999999999999
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048794 810 LFKQMIKGGIRPD-LKSYSVLVDC-LCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKR 887 (967)
Q Consensus 810 ~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 887 (967)
+|+++++. .|. ...+...+.+ +...|++++|..+|+++++.. +.++..+..++..+.+.|+.++|..+|++++..
T Consensus 378 ~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 378 IFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 99999984 443 3444444443 335899999999999999753 446788999999999999999999999999974
Q ss_pred C-CCCC--HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 888 G-ISPD--LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 888 ~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
. .+|+ ..+|..++......|+.+.+.++.+++++..|+++.
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~~ 498 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 498 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhcc
Confidence 2 2232 248888888888999999999999999999997654
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=2.6e-19 Score=192.00 Aligned_cols=293 Identities=11% Similarity=-0.022 Sum_probs=166.7
Q ss_pred HHhhccHHHHHH-HHHHHHHhcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCC
Q 048794 622 FCRQKKALAAKD-LFVKFTENLGVTS--TLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGR 698 (967)
Q Consensus 622 ~~~~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 698 (967)
+...+++++|.. .|.+.+......+ +...+..++..+...|++++|+..|+++++.. +.+..++..++.++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344466666666 6655433222111 23445666666777777777777777777654 2355566667777777777
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHH---------------HHHHHH
Q 048794 699 VEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYG---------------PLIDGL 763 (967)
Q Consensus 699 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---------------~l~~~~ 763 (967)
+++|+..|+++.... +.+..++..++.++...|++++|+..+++++...+........ .+...+
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 777777777776654 3355666667777777777777777777776653222211111 123333
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 048794 764 SKSGRLEEAKKLFEEMLDYGCKP-NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDD 841 (967)
Q Consensus 764 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 841 (967)
..|++++|+..++++.+..+.. +..++..++.++...|++++|+..|+++++. .|+ ..++..++.++...|++++
T Consensus 193 -~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 193 -SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp -HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred -hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 5666666666666666542111 3456666666666666666666666666653 343 4566666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----------HHhHHHHHHHHHhcCCHH
Q 048794 842 ALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD-----------LYTYNSLILNLGRAGMVE 910 (967)
Q Consensus 842 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~ 910 (967)
|+..++++++.. +.+..++..++.+|...|++++|...++++++. .+.+ ..+|..++.++...|+++
T Consensus 270 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 270 AVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM-QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 666666666532 334556666666666666666666666666532 1111 456666666666666666
Q ss_pred HHHHhhcCCCc
Q 048794 911 EARKLAGGNCF 921 (967)
Q Consensus 911 ~A~~~~~~~l~ 921 (967)
+|...+++.++
T Consensus 348 ~A~~~~~~~l~ 358 (368)
T 1fch_A 348 AYGAADARDLS 358 (368)
T ss_dssp GHHHHHTTCHH
T ss_pred hHHHhHHHHHH
Confidence 66666665554
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=3.1e-20 Score=199.34 Aligned_cols=287 Identities=12% Similarity=0.011 Sum_probs=233.5
Q ss_pred HHhcCChHHHHH-HHHHHHHcCCC-c--CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 048794 658 LLEVHATEMGLD-LFTTMKNAGCA-P--DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNS 733 (967)
Q Consensus 658 ~~~~~~~~~A~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 733 (967)
+...|++++|+. .|++....... | +...+..++..+...|++++|+.+|+++.... +.+..++..++.++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 345578899988 88866654321 1 35668899999999999999999999999885 5577789999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH----------------HHHHH
Q 048794 734 IDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYN----------------ILING 797 (967)
Q Consensus 734 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------------~l~~~ 797 (967)
+++|+..+++++... +.+..++..++.+|...|++++|+..++++.+..+. +...+. .++..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999999874 456778999999999999999999999999986422 222222 34555
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048794 798 FGKTGDVETACELFKQMIKGGIRPD---LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRI 874 (967)
Q Consensus 798 ~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 874 (967)
+ ..|++++|+..|+++++. .|+ ..++..++.++...|++++|...++++++.. +.+..++..++.++...|++
T Consensus 192 ~-~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 192 L-SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp H-HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred h-hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCH
Confidence 5 889999999999999984 454 7889999999999999999999999999753 44678899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCc-----------ccc-ccceeeeccCCCc
Q 048794 875 EEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSE-----------FVS-SELQVIYAENPRA 942 (967)
Q Consensus 875 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-----------~~~-~~l~~~~~~~g~~ 942 (967)
++|...++++++. .+.+..++..++.++.+.|++++|+.+++++++++|++ +.. ..++.+|...|++
T Consensus 268 ~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 268 EEAVAAYRRALEL-QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 9999999999975 45567899999999999999999999999999999988 444 6899999999999
Q ss_pred ccccchhhhh
Q 048794 943 TSLSHKHCEY 952 (967)
Q Consensus 943 ~~~~~~~~~~ 952 (967)
+++..-+.+.
T Consensus 347 ~~A~~~~~~~ 356 (368)
T 1fch_A 347 DAYGAADARD 356 (368)
T ss_dssp GGHHHHHTTC
T ss_pred HhHHHhHHHH
Confidence 9987744433
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=3e-18 Score=180.33 Aligned_cols=270 Identities=10% Similarity=-0.000 Sum_probs=196.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 048794 651 YNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVK 730 (967)
Q Consensus 651 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 730 (967)
+..++..+...|++++|+..|+++++.. +.+..++..++..+...|++++|+..|+++.... +.+..++..++.++..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 3344444555555555555555555443 2244455555555666666666666666655543 3344455555556666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhcHHHH--------------HH-HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048794 731 SNSIDKAMDLFYNLVSGGFSPTPCTYGPL--------------ID-GLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILI 795 (967)
Q Consensus 731 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 795 (967)
.|++++|...+++++...+ .....+..+ +. .+...|++++|+..++++.+.. +.+..++..++
T Consensus 102 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp TTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 6666666666666555421 122222222 33 4778899999999999999864 33678999999
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048794 796 NGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRI 874 (967)
Q Consensus 796 ~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 874 (967)
.++...|++++|+..++++++. .|+ ..++..++.++...|++++|...++++++.. +.+..++..++.++...|++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence 9999999999999999999984 454 7889999999999999999999999999753 45678899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC-------------HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 875 EEALSLFDEMKKRGISPD-------------LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 875 ~~A~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
++|.+.++++.+. .|+ ..++..++.++...|++++|...++++++..|++...
T Consensus 257 ~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 322 (327)
T 3cv0_A 257 DLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFGL 322 (327)
T ss_dssp HHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTTS
T ss_pred HHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhhH
Confidence 9999999999864 333 5788999999999999999999999999998887664
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=1.8e-18 Score=185.05 Aligned_cols=268 Identities=13% Similarity=0.008 Sum_probs=204.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 048794 648 LEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISG 727 (967)
Q Consensus 648 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 727 (967)
...+..++..+.+.|++++|+..|+++++.. +.+..++..++.++...|++++|+..|+++.... +.+..++..++.+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3446677777778888888888888777764 3356777788888888888888888888887764 4456677888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC---------ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 048794 728 LVKSNSIDKAMDLFYNLVSGGFSP---------TPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCK-PNCVIYNILING 797 (967)
Q Consensus 728 ~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~ 797 (967)
|...|++++|+..+++++...+.. ....+..++.++...|++++|+..|+++++..+. ++..++..++.+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 888888888888888877652111 1122344588899999999999999999986422 157799999999
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048794 798 FGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEE 876 (967)
Q Consensus 798 ~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 876 (967)
|...|++++|+..|+++++. .|+ ..++..++.+|...|++++|+..|+++++.. +.+..++..++.+|...|++++
T Consensus 223 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999884 454 7889999999999999999999999999753 4467889999999999999999
Q ss_pred HHHHHHHHHHcCCCC-------------CHHhHHHHHHHHHhcCCHHHHHHhhcCCCcC
Q 048794 877 ALSLFDEMKKRGISP-------------DLYTYNSLILNLGRAGMVEEARKLAGGNCFV 922 (967)
Q Consensus 877 A~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 922 (967)
|...++++++. .| +..+|..++.++...|+.+.|.+..++.+..
T Consensus 300 A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~ 356 (365)
T 4eqf_A 300 AVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDV 356 (365)
T ss_dssp HHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHH
Confidence 99999999853 22 2578899999999999999999988876543
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=3.1e-19 Score=181.75 Aligned_cols=271 Identities=13% Similarity=0.033 Sum_probs=170.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 048794 658 LLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKA 737 (967)
Q Consensus 658 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 737 (967)
....|++..|+..++......+.+.......++.+|...|++++|+..++. . .+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHH
Confidence 345566666666665544332111123445566677777777777765543 1 244455666666667777777777
Q ss_pred HHHHHHHHhCCC-CCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 048794 738 MDLFYNLVSGGF-SPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIK 816 (967)
Q Consensus 738 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 816 (967)
++.+++++..+. +.+...+..++.++...|++++|++.+++ +.+..++..++.++.+.|++++|++.|+++++
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 777777766542 33455566667777777777777777766 24566777777777777777777777777776
Q ss_pred CCCCCCHH-HHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 048794 817 GGIRPDLK-SYS--VLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL 893 (967)
Q Consensus 817 ~~~~p~~~-~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 893 (967)
. .|+.. ... .+...+...|++++|..+|+++++.. +.+...++.++.++.+.|++++|...++++++. .|.++
T Consensus 159 ~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-~p~~~ 234 (291)
T 3mkr_A 159 Q--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-DSGHP 234 (291)
T ss_dssp H--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCH
T ss_pred h--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCH
Confidence 3 45522 111 12233334577777777777777652 456667777777777777777777777777754 34455
Q ss_pred HhHHHHHHHHHhcCCHHH-HHHhhcCCCcCCCCccccccceeeeccCCCcccc
Q 048794 894 YTYNSLILNLGRAGMVEE-ARKLAGGNCFVQPSEFVSSELQVIYAENPRATSL 945 (967)
Q Consensus 894 ~~~~~l~~~~~~~g~~~~-A~~~~~~~l~~~p~~~~~~~l~~~~~~~g~~~~~ 945 (967)
.++..++.++...|+.++ +.++++++++++|+++.. ..++.+.+.|+++
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~---~d~~~~~~~fd~~ 284 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI---KEYRAKENDFDRL 284 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHHHH
Confidence 777777777777777755 467777777777777773 3334444444443
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=2.1e-17 Score=183.91 Aligned_cols=385 Identities=10% Similarity=-0.060 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhccC-------C
Q 048794 438 VTYNTLLSGLGKEGQVQKAIELFEGMTDH--------GCFPNTVTFNTLLHCLCKNEEVDLAMKMLYEMTPR-------N 502 (967)
Q Consensus 438 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~ 502 (967)
..|+.+...+...|++++|++.+++..+. ..+....+|..+..+|...|++++|...++++... .
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 34444444444555555555554443321 01112344555555555555555555555544321 0
Q ss_pred CCCCHHHHHHHHHHHhh--cCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHH---hcCChhHHHHHHHHHHhhcCCCcch
Q 048794 503 CWPDVLTYNTIIYGLVK--EQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVV---KDGQIEDAFRLAKCSIYQIGTRAER 577 (967)
Q Consensus 503 ~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~ 577 (967)
......++...+.++.. .+++++|+..|+++.+..|.++..+..++..+. ..++.++|++.+++++...+..+..
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~ 211 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHH
Confidence 01123344444444333 346777777777777777777666666655533 3455566666666665543222111
Q ss_pred hhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 048794 578 QFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHG 657 (967)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 657 (967)
..... ..+...+...++.++|...+++.... .+....++..++..
T Consensus 212 ~~~l~---------------------------------~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~ 256 (472)
T 4g1t_A 212 KVLLA---------------------------------LKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKF 256 (472)
T ss_dssp HHHHH---------------------------------HHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred HHHHH---------------------------------HHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHH
Confidence 00000 00011112233444444444444332 23444555555555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 048794 658 LLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKA 737 (967)
Q Consensus 658 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 737 (967)
+...|++++|+..++++++.. +.+..++..++.+|...+....+ .. ...........+..+.|
T Consensus 257 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~A 319 (472)
T 4g1t_A 257 YRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMN---------LR-------ENGMYGKRKLLELIGHA 319 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHH
T ss_pred HHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhh---------HH-------HHHHHHHHHHHhhHHHH
Confidence 556666666666665555542 12334444444444321110000 00 00000011122346778
Q ss_pred HHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHH-HhccCCHHHHHHHHHHH
Q 048794 738 MDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCV--IYNILING-FGKTGDVETACELFKQM 814 (967)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~-~~~~~~~~~A~~~~~~~ 814 (967)
...++++...+ +....++..++.+|...|++++|+..|+++++..+.+... .+..++.. +...|++++|+..|+++
T Consensus 320 ~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ka 398 (472)
T 4g1t_A 320 VAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398 (472)
T ss_dssp HHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888888764 4455688899999999999999999999999864332221 34445543 45788999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048794 815 IKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKR 887 (967)
Q Consensus 815 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 887 (967)
++ +.|+..... +....+..++++.++.+ +.++.++..++.+|...|++++|++.|+++++.
T Consensus 399 l~--i~~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 399 VK--INQKSREKE---------KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HH--SCCCCHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC------------
T ss_pred Hh--cCcccHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 98 567643222 22334456667777653 457788999999999999999999999999864
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=6.9e-16 Score=173.52 Aligned_cols=218 Identities=11% Similarity=0.074 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc-------cCChH-------HHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 048794 665 EMGLDLFTTMKNAGCAPDISTYNLLLDGYGK-------SGRVE-------ELLKLYEEMSFRGCKPNTISHNIVISGLVK 730 (967)
Q Consensus 665 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 730 (967)
.++...|++.+... +.+...|..++..+.+ .|+++ +|..+|++++..-.+.+...|..++..+..
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 37788999988864 3467788888888775 79987 999999999973224567789999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHH
Q 048794 731 SNSIDKAMDLFYNLVSGGFSPT-PCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILING-FGKTGDVETAC 808 (967)
Q Consensus 731 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~ 808 (967)
.|++++|..+|+++++.. +.+ ..+|...+..+.+.|++++|+++|+++.+.. +.+...+...+.. +...|++++|.
T Consensus 334 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred cCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHH
Confidence 999999999999999963 223 2578888999999999999999999999863 2234445444443 34689999999
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 809 ELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNG-LDA--DTISYNFMINGLGRSGRIEEALSLFDEM 884 (967)
Q Consensus 809 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 884 (967)
.+|+++++. .|+ ...|..++..+.+.|+.++|..+|++++..+ .+| ....|...+......|+.+.+..+.+++
T Consensus 412 ~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 412 KIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999984 565 7889999999999999999999999999853 223 2447778888888999999999999999
Q ss_pred HHc
Q 048794 885 KKR 887 (967)
Q Consensus 885 ~~~ 887 (967)
.+.
T Consensus 490 ~~~ 492 (530)
T 2ooe_A 490 FTA 492 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=1.5e-19 Score=193.46 Aligned_cols=261 Identities=11% Similarity=0.011 Sum_probs=218.7
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHH
Q 048794 682 DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLID 761 (967)
Q Consensus 682 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 761 (967)
+...+..++..+.+.|++++|+.+|++++... +.+..++..++.++...|++++|+..|++++... +.+..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568899999999999999999999999875 5577899999999999999999999999999874 455778999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC---CHHHHH
Q 048794 762 GLSKSGRLEEAKKLFEEMLDYGCKPNC-----------VIYNILINGFGKTGDVETACELFKQMIKGGIRP---DLKSYS 827 (967)
Q Consensus 762 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~ 827 (967)
+|...|++++|+..|+++++.. |+. ..+..++.++...|++++|+..|+++++. .| +..++.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 217 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQT 217 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHH
Confidence 9999999999999999998752 321 23345688899999999999999999984 45 478999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 048794 828 VLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAG 907 (967)
Q Consensus 828 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 907 (967)
.++.++...|++++|+..++++++.. +.+..++..++.+|...|++++|+..++++++. .|.+..++..++.++...|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI-QPGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCC
Confidence 99999999999999999999999853 457889999999999999999999999999975 4555799999999999999
Q ss_pred CHHHHHHhhcCCCcCCCCccc-------------cccceeeeccCCCcccccchhh
Q 048794 908 MVEEARKLAGGNCFVQPSEFV-------------SSELQVIYAENPRATSLSHKHC 950 (967)
Q Consensus 908 ~~~~A~~~~~~~l~~~p~~~~-------------~~~l~~~~~~~g~~~~~~~~~~ 950 (967)
++++|+..++++++++|++.. +..|+.++...|+.+.+.....
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999988422 2589999999999988666333
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=1e-18 Score=183.98 Aligned_cols=266 Identities=9% Similarity=-0.029 Sum_probs=224.5
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHH
Q 048794 682 DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLID 761 (967)
Q Consensus 682 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 761 (967)
+...+..++..+...|++++|+.+|+++.... +.+..++..++.++...|++++|...+++++... +.+..++..++.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 44567788999999999999999999999875 4477788899999999999999999999999874 456678889999
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHhccCCHHHHHHHHHHHHhCCCCC-CHHH
Q 048794 762 GLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNIL--------------IN-GFGKTGDVETACELFKQMIKGGIRP-DLKS 825 (967)
Q Consensus 762 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~ 825 (967)
+|...|++++|+..++++.+..+. +...+..+ +. ++...|++++|+..++++++. .| +..+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 174 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQL 174 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHH
Confidence 999999999999999999986322 33333333 33 477889999999999999984 45 4788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 048794 826 YSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGR 905 (967)
Q Consensus 826 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 905 (967)
+..++.++...|++++|...++++++.. +.+..++..++.++...|++++|...++++++. .+.+..++..++.++..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI-NPGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999753 456788999999999999999999999999875 45567899999999999
Q ss_pred cCCHHHHHHhhcCCCcCCCC------------cccc-ccceeeeccCCCcccccchhhhhhc
Q 048794 906 AGMVEEARKLAGGNCFVQPS------------EFVS-SELQVIYAENPRATSLSHKHCEYLA 954 (967)
Q Consensus 906 ~g~~~~A~~~~~~~l~~~p~------------~~~~-~~l~~~~~~~g~~~~~~~~~~~~~~ 954 (967)
.|++++|++.+++++.++|+ ++.. ..++.+|...|++++|.....+.+.
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999999 5666 6999999999999998774444333
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.77 E-value=4.7e-18 Score=165.26 Aligned_cols=190 Identities=17% Similarity=0.047 Sum_probs=107.9
Q ss_pred ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 048794 752 TPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLV 830 (967)
Q Consensus 752 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 830 (967)
+...+..++..+.+.|++++|+..|+++++.. +.+...+..++.++...|++++|+..|+++++ ..|+ ..++..++
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHH
Confidence 34455555566666666666666666665542 22445566666666666666666666666655 2443 45555666
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 048794 831 DCLCMV-----------GRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSL 899 (967)
Q Consensus 831 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 899 (967)
.++... |++++|+..++++++.+ +.+..++..++.++...|++++|+..++++++.. .+..++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666666 66666666666666532 2245556666666666666666666666666543 455666666
Q ss_pred HHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCCcccccc
Q 048794 900 ILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPRATSLSH 947 (967)
Q Consensus 900 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~~~~~~~ 947 (967)
+.++...|++++|+..++++++++|+++.. ..++.+|...|++++|..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence 666666666666666666666666666665 466666666666666555
No 33
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.76 E-value=3.1e-17 Score=167.18 Aligned_cols=252 Identities=11% Similarity=0.010 Sum_probs=195.2
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhcHHHHHH
Q 048794 684 STYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPT--PCTYGPLID 761 (967)
Q Consensus 684 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~ 761 (967)
..+...+..+...|++++|+..|+++.... +.+..++..++.++...|++++|+..+++++.....+. ...+..++.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 455667778888899999999998888874 34555788888888899999999999998888421111 223788899
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 048794 762 GLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVD 840 (967)
Q Consensus 762 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 840 (967)
+|...|++++|+..|+++.+.. +.+..+|..++.+|...|++++|+..|+++++. .|+ ..++..++..+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998864 336678999999999999999999999999884 555 678888884444556999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCC------HHhHHHHHHHHHhcCCHH
Q 048794 841 DALHYFEELKLNGLDADTISYNFMINGLGRSGR---IEEALSLFDEMKKRG-ISPD------LYTYNSLILNLGRAGMVE 910 (967)
Q Consensus 841 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~ 910 (967)
+|...++++++.. +.+...+..++.++...|+ +++|...++++.+.. -.|+ ..++..++..+...|+++
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999753 4457788889999988888 888999999887431 1123 157788999999999999
Q ss_pred HHHHhhcCCCcCCCCcccc-ccceeeeccCC
Q 048794 911 EARKLAGGNCFVQPSEFVS-SELQVIYAENP 940 (967)
Q Consensus 911 ~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g 940 (967)
+|+.+++++++++|+|+.+ -.++.+....+
T Consensus 239 ~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 239 KADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999999999999999998 46666655443
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=2.6e-16 Score=160.15 Aligned_cols=277 Identities=13% Similarity=0.083 Sum_probs=218.2
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHcc
Q 048794 619 IKLFCRQKKALAAKDLFVKFTENLGVTST--LEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKS 696 (967)
Q Consensus 619 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 696 (967)
++..+..|++..|...+++... ..++ ......++..|...|++++|+..++.. .+|+..++..++..+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCC
Confidence 4566788999999999877622 1222 345567789999999999999876542 256777888899999999
Q ss_pred CChHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHH
Q 048794 697 GRVEELLKLYEEMSFRGC-KPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKL 775 (967)
Q Consensus 697 g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 775 (967)
++.++|++.++++...+. +.+...+..++.++...|++++|+..+++ +.+...+..++.+|.+.|++++|++.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999987653 33566778888999999999999999987 45667888999999999999999999
Q ss_pred HHHHHHCCCCCCHH-HH--HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 776 FEEMLDYGCKPNCV-IY--NILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 776 ~~~~~~~~~~~~~~-~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
|+++.+.. |+.. .. ..+...+...|++++|+.+|+++++. .+++...++.++.++.+.|++++|...++++++.
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999863 4433 21 12234455668999999999999985 3445789999999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhc
Q 048794 853 GLDADTISYNFMINGLGRSGRIEE-ALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAG 917 (967)
Q Consensus 853 ~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 917 (967)
+ +.++.++..++.++...|+.++ +.++++++++ +.|+... +.....+.+.+++|..-|.
T Consensus 230 ~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~---~~d~~~~~~~fd~~~~~~~ 289 (291)
T 3mkr_A 230 D-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF---IKEYRAKENDFDRLVLQYA 289 (291)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH---HHHHHHHHHHHHHHHHHHS
T ss_pred C-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH---HHHHHHHHHHHHHHHHHcC
Confidence 4 4578899999999999999876 5789999986 4455433 2234666677787776653
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.75 E-value=3.4e-17 Score=165.42 Aligned_cols=231 Identities=10% Similarity=0.049 Sum_probs=166.2
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--C----hhcHH
Q 048794 684 STYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSP--T----PCTYG 757 (967)
Q Consensus 684 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~----~~~~~ 757 (967)
..+..++..+...|++++|+.+|+++.... .+..++..++.++...|++++|+..+++++...+.. + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345556666666666666666666666654 455566666666666677777776666666542111 1 35677
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc
Q 048794 758 PLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMV 836 (967)
Q Consensus 758 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 836 (967)
.++.+|...|++++|+..|+++.+. .|+. ..+...|++++|+..+++++. ..|+ ...+..++.++...
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHh
Confidence 7788888888888888888888775 3442 345556778888888888887 3555 46777888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhh
Q 048794 837 GRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLA 916 (967)
Q Consensus 837 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 916 (967)
|++++|...++++++.. +.+..++..++.++...|++++|...++++++. .+.+...+..++.++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 88888888888888753 446777888888888888888888888888864 3445678888888888888888888888
Q ss_pred cCCCcCC------CCcccc
Q 048794 917 GGNCFVQ------PSEFVS 929 (967)
Q Consensus 917 ~~~l~~~------p~~~~~ 929 (967)
+++++++ |++...
T Consensus 231 ~~a~~~~~~~~~~p~~~~~ 249 (258)
T 3uq3_A 231 DAARTKDAEVNNGSSAREI 249 (258)
T ss_dssp HHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHhChhhcCCCchHHH
Confidence 8888888 777665
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.74 E-value=4e-17 Score=178.03 Aligned_cols=272 Identities=15% Similarity=0.039 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccC---ChHHHHHHHHHHHhCCCCCChhhHHHH
Q 048794 648 LEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSG---RVEELLKLYEEMSFRGCKPNTISHNIV 724 (967)
Q Consensus 648 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l 724 (967)
+.+...++..|...+.++++......+.+.-...+..++..++.+|...| ++++|+.+|+++...+ +++...+..+
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~L 219 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSV 219 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 45666777777777755554444333322211223347888898998899 8999999999999886 5566655777
Q ss_pred HHHHHhc----CCHHHHHHHHHHHHhCCCCCChhcHHHHHHH-H--HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048794 725 ISGLVKS----NSIDKAMDLFYNLVSGGFSPTPCTYGPLIDG-L--SKSGRLEEAKKLFEEMLDYGCKPNCVIYNILING 797 (967)
Q Consensus 725 ~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 797 (967)
+..|... +++++|+.+|+++. +.++..+..++.+ | ...+++++|+..|+++.+.| +...+..++.+
T Consensus 220 g~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~ 292 (452)
T 3e4b_A 220 ARVLGDATLGTPDEKTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKL 292 (452)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 8777655 78999999999988 3445577777777 4 56889999999999999864 77788889988
Q ss_pred HhccC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048794 798 FGKTG-----DVETACELFKQMIKGGIRPDLKSYSVLVDCLCM----VGRVDDALHYFEELKLNGLDADTISYNFMINGL 868 (967)
Q Consensus 798 ~~~~~-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 868 (967)
|. .| ++++|+..|++.. ..+..+.+.|+.+|.. ..++++|..+|+++.+.| ++.....|+.+|
T Consensus 293 y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y 364 (452)
T 3e4b_A 293 YY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLF 364 (452)
T ss_dssp HH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHH
T ss_pred HH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHH
Confidence 87 45 9999999999877 2356788889988876 348999999999998865 334566788887
Q ss_pred Hh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH--hcCCHHHHHHhhcCCCcCCCCcccc-ccceeeecc
Q 048794 869 GR----SGRIEEALSLFDEMKKRGISPDLYTYNSLILNLG--RAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAE 938 (967)
Q Consensus 869 ~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~ 938 (967)
.. ..++++|..+|+.+.+.|. ......+..... ..++..+|...+++..+..|..... ..|..+-.+
T Consensus 365 ~~G~g~~~d~~~A~~~~~~A~~~g~---~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 438 (452)
T 3e4b_A 365 SQGKGTKPDPLNAYVFSQLAKAQDT---PEANDLATQLEAPLTPAQRAEGQRLVQQELAARGTLAQSTLQLHALQEE 438 (452)
T ss_dssp HSCTTBCCCHHHHHHHHHHHHTTCC---HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC----CCCBC----
T ss_pred HhCCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhc
Confidence 64 4589999999999986542 333333333332 2357788888888776655553222 345555433
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.74 E-value=1.4e-16 Score=154.69 Aligned_cols=200 Identities=17% Similarity=0.081 Sum_probs=146.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048794 715 KPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNIL 794 (967)
Q Consensus 715 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 794 (967)
+++...+..++..+...|++++|+..|+++++.. +.+...+..++.++.+.|++++|+..|+++++.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4455667777777777777777777777777763 4455677778888888888888888888888763 2356678888
Q ss_pred HHHHhcc-----------CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048794 795 INGFGKT-----------GDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYN 862 (967)
Q Consensus 795 ~~~~~~~-----------~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 862 (967)
+.++... |++++|+..|+++++ ..|+ ..++..++.++...|++++|+..|+++++.+ .++..+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 8888888 999999999999888 4665 6788889999999999999999999998865 6778888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCc
Q 048794 863 FMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCF 921 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 921 (967)
.++.+|...|++++|+..|+++++. .|.+..++..++.++...|++++|+..++++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~-~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQ-APKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 8999999999999999999998874 344568888999999999999999999887753
No 38
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.71 E-value=2.1e-16 Score=165.98 Aligned_cols=247 Identities=10% Similarity=0.012 Sum_probs=192.2
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCChhcHHHHHH
Q 048794 683 ISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNS-IDKAMDLFYNLVSGGFSPTPCTYGPLID 761 (967)
Q Consensus 683 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 761 (967)
..++..++.++...|++++|+..|++++... +.+..+|..++.++...|+ +++|+..|++++..+ +.+..+|..++.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3456677777788888888888888888764 4456677888888888886 888888888888764 445667888888
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh-cCCH
Q 048794 762 GLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCM-VGRV 839 (967)
Q Consensus 762 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g~~ 839 (967)
++...|++++|+..|+++++.. +.+..+|..++.++...|++++|+..|+++++ ..|+ ..+|+.++.++.. .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcc
Confidence 8888899999999999998864 33677899999999999999999999999988 4565 6888899998888 5665
Q ss_pred HHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-----
Q 048794 840 DDA-----LHYFEELKLNGLDADTISYNFMINGLGRSG--RIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAG----- 907 (967)
Q Consensus 840 ~~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 907 (967)
++| +..+++++..+ +.+..+|..++.++...| ++++|++.++++ +. .+.+..++..++.++.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 777 58888888753 346778888898888888 688999888887 32 3444578888888888874
Q ss_pred ---C-HHHHHHhhcCC-CcCCCCcccc-ccceeeec
Q 048794 908 ---M-VEEARKLAGGN-CFVQPSEFVS-SELQVIYA 937 (967)
Q Consensus 908 ---~-~~~A~~~~~~~-l~~~p~~~~~-~~l~~~~~ 937 (967)
+ +++|+++++++ ++++|..... ..++..+.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 3 58999999998 8999988875 45555443
No 39
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.71 E-value=4.1e-15 Score=151.22 Aligned_cols=230 Identities=13% Similarity=-0.024 Sum_probs=161.8
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhcHH
Q 048794 682 DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVK----SNSIDKAMDLFYNLVSGGFSPTPCTYG 757 (967)
Q Consensus 682 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 757 (967)
+..++..++..+...|++++|+.+|+++... .+..++..++..|.. .+++++|+..|+++...+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4445566666666666777777777666652 244556666666666 677777777777766653 445666
Q ss_pred HHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048794 758 PLIDGLSK----SGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGK----TGDVETACELFKQMIKGGIRPDLKSYSVL 829 (967)
Q Consensus 758 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 829 (967)
.++.+|.. .+++++|+..|+++.+.+ +..++..++.+|.. .+++++|+..|+++.+.+ +..++..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 67777777 777777777777777742 66677777777777 778888888888877743 45667777
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 048794 830 VDCLCM----VGRVDDALHYFEELKLNGLDADTISYNFMINGLGR----SGRIEEALSLFDEMKKRGISPDLYTYNSLIL 901 (967)
Q Consensus 830 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 901 (967)
+.+|.. .+++++|+.+|+++.+.+ ++..+..++.+|.. .+++++|+..++++.+.+ +...+..++.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777 778888888888777643 45666777777777 778888888888777642 2566777777
Q ss_pred HHHh----cCCHHHHHHhhcCCCcCCCCcccc
Q 048794 902 NLGR----AGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 902 ~~~~----~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
++.. .|++++|++++++++++.|++...
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 7777 778888888888888887776654
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.5e-15 Score=153.36 Aligned_cols=225 Identities=14% Similarity=0.094 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCC--C----hhhH
Q 048794 648 LEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKP--N----TISH 721 (967)
Q Consensus 648 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~ 721 (967)
...+..++..+...|++++|+..|+++++.. .+..++..++.++...|++++|+..++++....+.. + ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456677788888889999999998888876 677788888889999999999999999888753221 1 4677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 048794 722 NIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKT 801 (967)
Q Consensus 722 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 801 (967)
..++.++...|++++|+..+++++... ++ ...+...|++++|+..++++.... +.+...+..++.++...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 888888999999999999999988853 32 345677788999999999998853 22455888999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048794 802 GDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSL 880 (967)
Q Consensus 802 ~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 880 (967)
|++++|+..|+++++. .| +..++..++.++...|++++|...++++++.+ +.+..++..++.++...|++++|...
T Consensus 153 ~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999884 45 47889999999999999999999999999754 44678899999999999999999999
Q ss_pred HHHHHHc
Q 048794 881 FDEMKKR 887 (967)
Q Consensus 881 ~~~~~~~ 887 (967)
++++++.
T Consensus 230 ~~~a~~~ 236 (258)
T 3uq3_A 230 LDAARTK 236 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999853
No 41
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.69 E-value=8.5e-15 Score=150.66 Aligned_cols=283 Identities=17% Similarity=0.143 Sum_probs=131.8
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHH
Q 048794 29 LKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMN 108 (967)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 108 (967)
+.|++++|.+.++++. .+.+|..++.++.+.|++++|++.|.+. +|...|..++.++...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5677999999999983 3469999999999999999999999653 566789999999999999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 048794 109 LLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSH 188 (967)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 188 (967)
.++...+. .+++.+...++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88777664 3457778889999999999999988874 367779999999999999999999999987
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048794 189 QPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTL 268 (967)
Q Consensus 189 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 268 (967)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|...... +...+.....+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence 36889999999999999999999987 2789999999999999999999655443 22344556678
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc-CCCC------CcccHHHHHHH
Q 048794 269 ICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALETFEKMKIR-GIVP------NVVSCNASLYS 341 (967)
Q Consensus 269 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~ 341 (967)
+..|.+.|.+++|..+++...... +.....|..+..+|++- .+++..+.++..... +++| +...|..+...
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999988665 55666777776666654 444444444433222 1222 46778888888
Q ss_pred HHhcCCHHHHHHH
Q 048794 342 LAETGRIGEAKTI 354 (967)
Q Consensus 342 ~~~~g~~~~a~~~ 354 (967)
|...++++.|...
T Consensus 292 y~~~~e~d~A~~t 304 (449)
T 1b89_A 292 YDKYEEYDNAIIT 304 (449)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHhhchHHHHHHH
Confidence 8888888877663
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=3.7e-15 Score=162.51 Aligned_cols=345 Identities=13% Similarity=0.022 Sum_probs=233.1
Q ss_pred HHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCCh---hHHHHHHHHHHhhcCCCcchhhHhhhhhhhcc
Q 048794 513 IIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQI---EDAFRLAKCSIYQIGTRAERQFWQDLVGGILT 589 (967)
Q Consensus 513 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (967)
+...+.+.|++++|..+|+++.+. .+...+..++..|...|.. ++|++.+++++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~------------------- 67 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT------------------- 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC--------------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-------------------
Confidence 445566667777777777776543 3455566666666666666 6777776665532
Q ss_pred cCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhh-----ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 048794 590 VAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQ-----KKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHAT 664 (967)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 664 (967)
++.....++..+... ++.++|...|++.... .++.++..++..|...+..
T Consensus 68 ---------------------~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~----g~~~A~~~Lg~~y~~~~~~ 122 (452)
T 3e4b_A 68 ---------------------SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN----GEGNTLIPLAMLYLQYPHS 122 (452)
T ss_dssp ------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT----TCSSCHHHHHHHHHHCGGG
T ss_pred ---------------------CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHhCCCC
Confidence 112233444433333 3777788888777652 2233667777777765554
Q ss_pred H---HHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHH----HHHHHHhCCCCCChhhHHHHHHHHHhcC---CH
Q 048794 665 E---MGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLK----LYEEMSFRGCKPNTISHNIVISGLVKSN---SI 734 (967)
Q Consensus 665 ~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~ 734 (967)
+ ++...+......| +..+...++..|...+.++++.+ +++.+.. .+..++..++..|...| +.
T Consensus 123 ~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~ 195 (452)
T 3e4b_A 123 FPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQ 195 (452)
T ss_dssp CTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccH
Confidence 3 3455555555543 45677788888988885554444 4444443 34448889999999999 99
Q ss_pred HHHHHHHHHHHhCCCCCChhcHHHHHHHHHcC----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--hccCCHHHH
Q 048794 735 DKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKS----GRLEEAKKLFEEMLDYGCKPNCVIYNILING-F--GKTGDVETA 807 (967)
Q Consensus 735 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A 807 (967)
++|+..|+++...+ ++....+..++.+|... +++++|+..|+++. . -+...+..++.+ + ...+++++|
T Consensus 196 ~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A 270 (452)
T 3e4b_A 196 AELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQM 270 (452)
T ss_dssp HHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHH
T ss_pred HHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHH
Confidence 99999999999986 44444456788888665 79999999999998 3 366788888887 5 568899999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 048794 808 CELFKQMIKGGIRPDLKSYSVLVDCLCMVG-----RVDDALHYFEELKLNGLDADTISYNFMINGLGR----SGRIEEAL 878 (967)
Q Consensus 808 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 878 (967)
+..|++..+.| +..+++.|+.+|. .| ++++|..+|+++. . .++.+...|+.+|.. ..++++|.
T Consensus 271 ~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~ 342 (452)
T 3e4b_A 271 MKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKAL 342 (452)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHH
Confidence 99999999854 6778999999988 56 9999999999987 3 467788889988876 34999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHhhcCCCcCCCCc
Q 048794 879 SLFDEMKKRGISPDLYTYNSLILNLGR----AGMVEEARKLAGGNCFVQPSE 926 (967)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~ 926 (967)
.+|+++.+.| +......|+.+|.. ..++++|..+++++.+..+..
T Consensus 343 ~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 343 DHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE 391 (452)
T ss_dssp HHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 9999998654 45677788888875 469999999999998776544
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.68 E-value=4.7e-15 Score=155.73 Aligned_cols=250 Identities=12% Similarity=0.093 Sum_probs=210.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCC-hHHHHHHHHHHHhCCCCCChhhHHHHH
Q 048794 647 TLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGR-VEELLKLYEEMSFRGCKPNTISHNIVI 725 (967)
Q Consensus 647 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~ 725 (967)
...++..+...+...|++++|+..|+++++.+ +.+..+|+.++.++...|+ +++|+..|++++... +.+..+|..++
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 35677788888899999999999999999875 3367889999999999997 999999999999985 44778999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCH
Q 048794 726 SGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGK-TGDV 804 (967)
Q Consensus 726 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 804 (967)
.++...|++++|+..|++++..+ +.+..+|..++.++...|++++|+..|+++++..+ .+...|+.++.++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999874 55667899999999999999999999999999753 367799999999988 6665
Q ss_pred HHH-----HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 048794 805 ETA-----CELFKQMIKGGIRPD-LKSYSVLVDCLCMVG--RVDDALHYFEELKLNGLDADTISYNFMINGLGRSG---- 872 (967)
Q Consensus 805 ~~A-----~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 872 (967)
++| +..|++++. ..|+ ..+|+.++.++...| ++++|++.++++ +.+ +.+..++..++++|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp SHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccc
Confidence 777 589999998 4676 689999999999988 689999999988 432 446778899999998874
Q ss_pred -----CHHHHHHHHHHH-HHcCCCCC-HHhHHHHHHHHHhc
Q 048794 873 -----RIEEALSLFDEM-KKRGISPD-LYTYNSLILNLGRA 906 (967)
Q Consensus 873 -----~~~~A~~~~~~~-~~~~~~~~-~~~~~~l~~~~~~~ 906 (967)
.+++|+++|+++ .+ +.|. ...|..++..+...
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHH
Confidence 359999999999 64 4555 47777777766643
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=5.4e-15 Score=150.46 Aligned_cols=248 Identities=12% Similarity=0.046 Sum_probs=194.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChh----hHHHHH
Q 048794 650 MYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTI----SHNIVI 725 (967)
Q Consensus 650 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~ 725 (967)
.+...+..+...|++++|+..|+++++..+ .+..++..++.++...|++++|+..++++...+ ++.. ++..++
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYG 81 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHH
Confidence 445567777888899999999998887642 345578888899999999999999999998843 3332 378889
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhccCCH
Q 048794 726 SGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILI-NGFGKTGDV 804 (967)
Q Consensus 726 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~ 804 (967)
.++...|++++|+..+++++... +....++..++.+|...|++++|+..|+++++.. +.+..+|..++ .+|. .+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999998864 4455688899999999999999999999998863 34667888888 5555 4599
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCC
Q 048794 805 ETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGR---VDDALHYFEELKLNG-LDAD------TISYNFMINGLGRSGR 873 (967)
Q Consensus 805 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~ 873 (967)
++|+..|+++++. .|+ ...+..++.++...|+ +++|...++++++.. ..|+ ..++..++.+|...|+
T Consensus 159 ~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 159 VKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 9999999999984 565 6788889999999888 888999999988521 1233 2578889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 048794 874 IEEALSLFDEMKKRGISPDLYTYNSLILNLGRA 906 (967)
Q Consensus 874 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 906 (967)
+++|.+.++++++. .|.+..++..+.......
T Consensus 237 ~~~A~~~~~~al~~-~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 237 KVKADAAWKNILAL-DPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHC------
T ss_pred HHHHHHHHHHHHhc-CccHHHHHHHhhhhhccc
Confidence 99999999999975 344567776666655443
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.67 E-value=6.4e-16 Score=154.35 Aligned_cols=216 Identities=15% Similarity=0.155 Sum_probs=140.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048794 719 ISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGF 798 (967)
Q Consensus 719 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 798 (967)
..+..++..+...|++++|...+++++... +.+...+..++.++...|++++|+..++++.+.. +.+..++..++.++
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 344455555555666666666666665542 3344566667777777777777777777777653 23566777778888
Q ss_pred hccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048794 799 GKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEA 877 (967)
Q Consensus 799 ~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 877 (967)
...|++++|+..++++++. .| +...+..++.++...|++++|...++++++.. +.+...+..++.++...|++++|
T Consensus 102 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888887773 34 45677778888888888888888888877643 44666777788888888888888
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCC
Q 048794 878 LSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENP 940 (967)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g 940 (967)
...++++.+. .+.+..++..++.++...|++++|...++++++++|+++.. ..++.+....|
T Consensus 179 ~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 179 LSQFAAVTEQ-DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHHHh-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 8888888764 34456778888888888888888888888888888888876 45655554433
No 46
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.66 E-value=1.4e-14 Score=149.04 Aligned_cols=284 Identities=12% Similarity=0.119 Sum_probs=95.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhHHH
Q 048794 239 KVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKALE 318 (967)
Q Consensus 239 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 318 (967)
+.|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+ .+|..++..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 3444555555555541 223455555555555555555555532 1334445555555555555555555
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 048794 319 TFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGC 398 (967)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 398 (967)
.++...+. .+++.+.+.++.+|.+.|++.++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 44444332 2234445555555666666655555542 244456666666666666666666666644
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHH
Q 048794 399 EPDVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTL 478 (967)
Q Consensus 399 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 478 (967)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 24666666666666666666666665 155666666666666666666644333211 222223345
Q ss_pred HHHHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhh--cCcHhHHHHHHHHHHhhcC-----CChhHHHhHHHHH
Q 048794 479 LHCLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVK--EQRVKDAIWFFHQMRKWLY-----PDHITLCTLLPGV 551 (967)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~ 551 (967)
+..|.+.|.+++|..+++..+..+ +-....|+.+.-.|.+ -++..+.++.|..-....+ .+...|..+.-.|
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666554 3344455555444443 2344444444433222222 3445566666666
Q ss_pred HhcCChhHHHHHH
Q 048794 552 VKDGQIEDAFRLA 564 (967)
Q Consensus 552 ~~~~~~~~A~~~~ 564 (967)
...++++.|+..+
T Consensus 293 ~~~~e~d~A~~tm 305 (449)
T 1b89_A 293 DKYEEYDNAIITM 305 (449)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HhhchHHHHHHHH
Confidence 6667777666543
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.66 E-value=7.4e-15 Score=147.43 Aligned_cols=204 Identities=11% Similarity=-0.024 Sum_probs=133.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 048794 722 NIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKT 801 (967)
Q Consensus 722 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 801 (967)
..++..+...|++++|...+++++... +.+...+..++.+|...|++++|++.++++.+.. +.+..++..++.++...
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHH
Confidence 334444444444444444444444432 2234455666666667777777777777766643 23556677777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048794 802 GDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSL 880 (967)
Q Consensus 802 ~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 880 (967)
|++++|+..++++++.+..|+ ...+..++.++...|++++|..+++++++.. +.+...+..++.++...|++++|...
T Consensus 119 g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 197 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQY 197 (252)
T ss_dssp TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777766323454 4566777777777777777777777777643 33566677777777777777777777
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 881 FDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
++++.+. .+.+...+..++.++...|++++|.++++++++++|+++..
T Consensus 198 ~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 198 YDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 7777753 34445667777777777777888888777777777777765
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.66 E-value=1.1e-13 Score=140.65 Aligned_cols=225 Identities=10% Similarity=-0.027 Sum_probs=192.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCChhh
Q 048794 645 TSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGK----SGRVEELLKLYEEMSFRGCKPNTIS 720 (967)
Q Consensus 645 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 720 (967)
+.++.++..++..+...|++++|+..|++..+. .+..++..++..+.. .+++++|+.+|+++...+ +..+
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 345667788888888899999999999988873 356778888889988 999999999999998874 6778
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048794 721 HNIVISGLVK----SNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSK----SGRLEEAKKLFEEMLDYGCKPNCVIYN 792 (967)
Q Consensus 721 ~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 792 (967)
+..++..|.. .+++++|+..|+++...+ +..++..++.+|.. .+++++|+..|+++.+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 8888999998 999999999999999864 56678889999998 999999999999999864 667888
Q ss_pred HHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048794 793 ILINGFGK----TGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCM----VGRVDDALHYFEELKLNGLDADTISYNFM 864 (967)
Q Consensus 793 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 864 (967)
.++.+|.. .+++++|+..|+++.+. .+...+..++.+|.. .+++++|+.+++++.+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDL---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 89999887 89999999999999985 356788899999999 999999999999999864 36778889
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHc
Q 048794 865 INGLGR----SGRIEEALSLFDEMKKR 887 (967)
Q Consensus 865 ~~~~~~----~g~~~~A~~~~~~~~~~ 887 (967)
+.+|.. .|++++|.+.++++.+.
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 999998 99999999999999875
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.66 E-value=2.9e-15 Score=141.77 Aligned_cols=178 Identities=16% Similarity=0.132 Sum_probs=154.3
Q ss_pred CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 048794 751 PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVL 829 (967)
Q Consensus 751 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l 829 (967)
.+..+|..++.+|.+.|++++|++.|+++++.. +.+..+|..++.+|...|++++|+..++++... .|+ ...+..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 355688999999999999999999999999874 336779999999999999999999999999884 554 6788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 048794 830 VDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMV 909 (967)
Q Consensus 830 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 909 (967)
+.++...+++++|...+.++.... +.+...+..++.+|...|++++|++.++++++. .|.+..++..++.++.+.|++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI-KPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-cchhhhHHHHHHHHHHHCCCH
Confidence 999999999999999999998753 456788899999999999999999999999975 455678999999999999999
Q ss_pred HHHHHhhcCCCcCCCCcccccccee
Q 048794 910 EEARKLAGGNCFVQPSEFVSSELQV 934 (967)
Q Consensus 910 ~~A~~~~~~~l~~~p~~~~~~~l~~ 934 (967)
++|++.++++++++|+++. +.||.
T Consensus 158 ~~A~~~~~~al~~~p~~a~-~~lal 181 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKKAK-YELAL 181 (184)
T ss_dssp HHHHHHHHHHHHTTHHHHH-HCSCC
T ss_pred HHHHHHHHHHHhCCccCHH-HHHHh
Confidence 9999999999999999864 34443
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.65 E-value=4.8e-16 Score=158.65 Aligned_cols=247 Identities=11% Similarity=-0.042 Sum_probs=126.8
Q ss_pred hcCChHHHHHHHHHHHHcCC---CcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 048794 660 EVHATEMGLDLFTTMKNAGC---APDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDK 736 (967)
Q Consensus 660 ~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 736 (967)
..+++++|+..|+++++... +.+..++..++..+...|++++|+..|+++...+ +.+..++..++.++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 55667777777777766421 1134456666666666777777777776666653 3345555666666666666666
Q ss_pred HHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 048794 737 AMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIK 816 (967)
Q Consensus 737 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 816 (967)
|+..+++++... +.+..++..++.+|...|++++|+..++++.+.. |+..........+...|++++|+..+++++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 666666666542 2234455555666666666666666666665532 2222222222233444566666666655554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 048794 817 GGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA---DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL 893 (967)
Q Consensus 817 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 893 (967)
. .|+......++..+...++.++|+..+++++...... +...+..++.+|...|++++|...++++++ ..|+.
T Consensus 173 ~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~ 248 (275)
T 1xnf_A 173 K--SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN 248 (275)
T ss_dssp H--SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT
T ss_pred c--CCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchh
Confidence 2 2222222234444555555555666655554321000 134455555555566666666666655553 22322
Q ss_pred HhHHHHHHHHHhcCCHHHHHHhh
Q 048794 894 YTYNSLILNLGRAGMVEEARKLA 916 (967)
Q Consensus 894 ~~~~~l~~~~~~~g~~~~A~~~~ 916 (967)
+...+.++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 112234455555555555544
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=1.3e-14 Score=142.70 Aligned_cols=207 Identities=9% Similarity=-0.023 Sum_probs=141.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048794 719 ISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGF 798 (967)
Q Consensus 719 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 798 (967)
..+..++..+...|++++|+..+++++... +.+...+..++.+|...|++++|+..++++.+.. +.+..++..++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344555555556666666666666555542 2334456666777777777777777777777653 23556777777777
Q ss_pred hcc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048794 799 GKT-GDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEE 876 (967)
Q Consensus 799 ~~~-~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 876 (967)
... |++++|+..++++++.+..|+ ...+..++.++...|++++|...++++++.. +.+...+..++.++...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 777 778888888877776323344 4667777777777888888888888777643 3356677777788888888888
Q ss_pred HHHHHHHHHHcCCC-CCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 877 ALSLFDEMKKRGIS-PDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 877 A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
|...++++.+. .+ .+...+..++..+...|+.++|..+++.+...+|+++.+
T Consensus 166 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 166 ADYYFKKYQSR-VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp HHHHHHHHHHH-HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 88888877754 23 455666666777777788888888888777778877765
No 52
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.64 E-value=4.9e-16 Score=169.11 Aligned_cols=299 Identities=15% Similarity=0.033 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC---HhhHHHHHHHHHccCChHHHHHHHHHHHhC----CCCC-Chh
Q 048794 648 LEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPD---ISTYNLLLDGYGKSGRVEELLKLYEEMSFR----GCKP-NTI 719 (967)
Q Consensus 648 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~ 719 (967)
...+...+..+...|++++|+..|+++++.++... ...+..++..+...|++++|+..++++... +.++ ...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34444555555666666666666666655432110 234555666666666666666666655432 1011 123
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCChhcHHHHHHHHHcCCC--------------------HHHHHH
Q 048794 720 SHNIVISGLVKSNSIDKAMDLFYNLVSGGF-----SPTPCTYGPLIDGLSKSGR--------------------LEEAKK 774 (967)
Q Consensus 720 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~--------------------~~~A~~ 774 (967)
++..++.++...|++++|...+.+++.... .....++..++.+|...|+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 455556666666666666666666554310 0112356666777777777 777777
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 048794 775 LFEEMLDY----GCKP-NCVIYNILINGFGKTGDVETACELFKQMIKGG-IRPD----LKSYSVLVDCLCMVGRVDDALH 844 (967)
Q Consensus 775 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~A~~ 844 (967)
.++++.+. +..+ ...++..++.+|...|++++|+..++++++.. ..++ ..++..++.++...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 77766532 1011 12367777777778888888888888776520 0112 2366777788888888888888
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHhHHHHHHHHHhcCCHHHHHH
Q 048794 845 YFEELKLN----GLDA-DTISYNFMINGLGRSGRIEEALSLFDEMKKR----GISPD-LYTYNSLILNLGRAGMVEEARK 914 (967)
Q Consensus 845 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 914 (967)
+++++++. +..+ ...++..++.+|...|++++|...++++.+. +.++. ..++..++.++...|++++|+.
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88877642 1001 1446667778888888888888888877632 11111 3566677788888888888888
Q ss_pred hhcCCCcCCCCcc------cc-ccceeeeccCCCccccc
Q 048794 915 LAGGNCFVQPSEF------VS-SELQVIYAENPRATSLS 946 (967)
Q Consensus 915 ~~~~~l~~~p~~~------~~-~~l~~~~~~~g~~~~~~ 946 (967)
++++++++.++.. .+ ..++.+|...|+..+..
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 367 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTN 367 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence 8888777644332 22 36777777777775533
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=8.3e-15 Score=149.40 Aligned_cols=243 Identities=11% Similarity=-0.062 Sum_probs=149.8
Q ss_pred ccCChHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHH
Q 048794 695 KSGRVEELLKLYEEMSFRGC---KPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEE 771 (967)
Q Consensus 695 ~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 771 (967)
..|++++|+..|+++..... +.+..++..++.++...|++++|+..|++++... +.+..++..++.+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34667777777777766421 1123456666777777777777777777777653 3345566677777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 772 AKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 772 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
|+..|+++++.. +.+..++..++.+|...|++++|+..|+++++ ..|+..........+...|++++|...+++++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 777777777653 22456677777777777777777777777766 345433333333444555777777777766665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCc
Q 048794 852 NGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD-----LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSE 926 (967)
Q Consensus 852 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 926 (967)
.. +++...+ .++..+...++.++|...++++.+. .|+ ...+..++.++...|++++|+..+++++.++|++
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 32 2333322 3556666666677777777766532 221 3566677777777777777777777777777766
Q ss_pred cccccceeeeccCCCcccccc
Q 048794 927 FVSSELQVIYAENPRATSLSH 947 (967)
Q Consensus 927 ~~~~~l~~~~~~~g~~~~~~~ 947 (967)
+. ..+.++...|+++++..
T Consensus 249 ~~--~~~~~~~~l~~~~~a~~ 267 (275)
T 1xnf_A 249 FV--EHRYALLELSLLGQDQD 267 (275)
T ss_dssp CH--HHHHHHHHHHHHHHC--
T ss_pred HH--HHHHHHHHHHHHHhhHH
Confidence 55 23445566666666655
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=2.3e-14 Score=142.88 Aligned_cols=215 Identities=16% Similarity=0.128 Sum_probs=148.0
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHH
Q 048794 682 DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLID 761 (967)
Q Consensus 682 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 761 (967)
....+..++..+...|++++|+.+|+++.... +.+...+..++.++...|++++|+..+++++... +.+...+..++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 44556667777777788888888888777654 4456677777777888888888888888777653 345567777888
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHH
Q 048794 762 GLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVD 840 (967)
Q Consensus 762 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 840 (967)
++...|++++|++.++++.+.. +.+..++..++.++...|++++|+..++++++. .| +...+..++.++...|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHH
Confidence 8888888888888888888764 336678888888888888999999999888874 44 4677888888888889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048794 841 DALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNL 903 (967)
Q Consensus 841 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 903 (967)
+|...++++++.. +.+..++..++.++...|++++|...++++++. .+.+..++..++...
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI-QPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH-CTTCHHHHHHHTC--
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc-CcchHHHHHHHHHHH
Confidence 9999998888753 446777888888899999999999999988864 344445555554433
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.61 E-value=3.9e-15 Score=162.06 Aligned_cols=276 Identities=17% Similarity=0.095 Sum_probs=187.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH----hhHHHHHHHHHccCChHHHHHHHHHHHhCC-----CCCChhhH
Q 048794 651 YNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDI----STYNLLLDGYGKSGRVEELLKLYEEMSFRG-----CKPNTISH 721 (967)
Q Consensus 651 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~ 721 (967)
+..++..+...|++++|+..|+++++.++. +. ..+..++..+...|++++|+..|+++.... .+....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 344556667777777777777777776322 22 356677777777788888888777765431 11123456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCChhcHHHHHHHHHcCCC-----------------HHHHHHHHHHH
Q 048794 722 NIVISGLVKSNSIDKAMDLFYNLVSG----G-FSPTPCTYGPLIDGLSKSGR-----------------LEEAKKLFEEM 779 (967)
Q Consensus 722 ~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~ 779 (967)
..++.+|...|++++|...+++++.. + .+....++..++.+|...|+ +++|+..++++
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 67777777888888888877776654 1 11223467777888888888 88888888776
Q ss_pred HHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 780 LDY----GCKP-NCVIYNILINGFGKTGDVETACELFKQMIKGGI-RPD----LKSYSVLVDCLCMVGRVDDALHYFEEL 849 (967)
Q Consensus 780 ~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 849 (967)
.+. +..+ ...++..++.+|...|++++|+..++++++... .++ ..++..++.+|...|++++|..+++++
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 542 1111 123777888888888888889888888876200 111 236778888888889999999888887
Q ss_pred HHCC--C-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHhHHHHHHHHHhcCCHHHHHHhhcCC
Q 048794 850 KLNG--L-DA--DTISYNFMINGLGRSGRIEEALSLFDEMKKR----GISPD-LYTYNSLILNLGRAGMVEEARKLAGGN 919 (967)
Q Consensus 850 ~~~~--~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 919 (967)
++.. . .+ ...++..++.++...|++++|...++++++. +..+. ..++..++.++...|++++|..+++++
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 7421 0 11 2456778888888899999999888887732 11111 246778888888889999999998888
Q ss_pred CcCCCCcc
Q 048794 920 CFVQPSEF 927 (967)
Q Consensus 920 l~~~p~~~ 927 (967)
+++.++-.
T Consensus 370 l~~~~~~~ 377 (411)
T 4a1s_A 370 LQLAXXXX 377 (411)
T ss_dssp HHHCCHHH
T ss_pred HHHHhhcc
Confidence 87765543
No 56
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.60 E-value=2.8e-15 Score=164.61 Aligned_cols=215 Identities=13% Similarity=-0.022 Sum_probs=175.1
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHH
Q 048794 697 GRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSI-DKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKL 775 (967)
Q Consensus 697 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 775 (967)
+++++++..+.+..... +.+...+..++.++...|++ ++|+..|+++++.. +.+..++..++.+|...|++++|+..
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 35778888888777653 44667888888888888998 99999999888864 44567888888899999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhcc---------CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc--------C
Q 048794 776 FEEMLDYGCKPNCVIYNILINGFGKT---------GDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMV--------G 837 (967)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g 837 (967)
|+++++. .|+...+..++.+|... |++++|+..|+++++. .|+ ...+..++.+|... |
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccc
Confidence 9998885 46677888888888888 8899999999998883 565 67888888888888 8
Q ss_pred CHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 048794 838 RVDDALHYFEELKLNGLD---ADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARK 914 (967)
Q Consensus 838 ~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 914 (967)
++++|+..|+++++.+ + .+...+..++.+|...|++++|...|+++++. .|.+...+..++.++...|++++|++
T Consensus 236 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 236 ISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL-DPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999988753 3 46778888999999999999999999988864 34456788888888888899999998
Q ss_pred hhcCC
Q 048794 915 LAGGN 919 (967)
Q Consensus 915 ~~~~~ 919 (967)
.+.++
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 88876
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.60 E-value=4.4e-15 Score=140.55 Aligned_cols=169 Identities=13% Similarity=0.118 Sum_probs=152.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048794 787 NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMI 865 (967)
Q Consensus 787 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 865 (967)
+..+|..++.+|...|++++|+..|+++++ ..|+ ..++..++.+|...|++++|...++++.... +.....+..++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 677999999999999999999999999998 4676 6899999999999999999999999998753 45677888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCCccc
Q 048794 866 NGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPRATS 944 (967)
Q Consensus 866 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~~~~ 944 (967)
..+...++++.|...+.++.+. .+.+...+..++.++...|++++|++.++++++++|+++.+ ..+|.+|...|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999975 45567899999999999999999999999999999999998 799999999999999
Q ss_pred ccchhhhhhcccccc
Q 048794 945 LSHKHCEYLASSCTF 959 (967)
Q Consensus 945 ~~~~~~~~~~~~~~~ 959 (967)
|...+.+.+..+|..
T Consensus 160 A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHhCCccC
Confidence 999666777777654
No 58
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=3.6e-13 Score=135.05 Aligned_cols=200 Identities=15% Similarity=0.036 Sum_probs=142.3
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHH
Q 048794 683 ISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDG 762 (967)
Q Consensus 683 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 762 (967)
...+..++..+...|++++|+.+|+++.... +.+..++..++.++...|++++|...+++++... +.+...+..++.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3455666666667777777777777766653 3345566666777777777777777777776653 3345567777777
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 048794 763 LSKSGRLEEAKKLFEEMLDYGCKP-NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVD 840 (967)
Q Consensus 763 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 840 (967)
|...|++++|++.++++.+.+..| +...+..++.++...|++++|+..++++++. .|+ ..++..++.++...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHH
Confidence 888888888888888877622233 3457777788888888888888888888774 343 667778888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048794 841 DALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKR 887 (967)
Q Consensus 841 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 887 (967)
+|..+++++++.. +.+...+..++.++...|++++|.+.++++.+.
T Consensus 193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888888887653 446667777888888888888888888888763
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.59 E-value=9.3e-15 Score=158.94 Aligned_cols=296 Identities=14% Similarity=0.065 Sum_probs=225.5
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc-CHhhHH
Q 048794 615 VVPIIKLFCRQKKALAAKDLFVKFTENLGVTST--LEMYNYLIHGLLEVHATEMGLDLFTTMKNA----GCAP-DISTYN 687 (967)
Q Consensus 615 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~ 687 (967)
....+..+...|++++|...|++.+...+..+. ..++..++..+...|++++|+..+++++.. +..| ...++.
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 356788999999999999999999876332221 357788899999999999999999987653 1112 245678
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 048794 688 LLLDGYGKSGRVEELLKLYEEMSFRGCK-PN----TISHNIVISGLVKSNS--------------------IDKAMDLFY 742 (967)
Q Consensus 688 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~ 742 (967)
.++..+...|++++|+..++++...... ++ ..++..++.+|...|+ +++|...+.
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 171 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYE 171 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 8899999999999999999998764211 11 3367888899999999 999999998
Q ss_pred HHHhC----C-CCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHH
Q 048794 743 NLVSG----G-FSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGC-KPN----CVIYNILINGFGKTGDVETACELFK 812 (967)
Q Consensus 743 ~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~ 812 (967)
+++.. + .+....++..++.+|...|++++|+..++++.+... .++ ..++..++.+|...|++++|+..++
T Consensus 172 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (406)
T 3sf4_A 172 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 251 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 87754 1 111234678899999999999999999999875311 122 2378889999999999999999999
Q ss_pred HHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048794 813 QMIKG----GIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN----GLDA-DTISYNFMINGLGRSGRIEEALSLFD 882 (967)
Q Consensus 813 ~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 882 (967)
++++. +..+. ..++..++.++...|++++|..+++++++. +..+ ...++..++.+|...|++++|...++
T Consensus 252 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 98752 11111 457889999999999999999999998752 1111 25578889999999999999999999
Q ss_pred HHHHc----CCCCC-HHhHHHHHHHHHhcCCHH
Q 048794 883 EMKKR----GISPD-LYTYNSLILNLGRAGMVE 910 (967)
Q Consensus 883 ~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~ 910 (967)
++++. +.++. ..++..++.++...|+..
T Consensus 332 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 332 KHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 98732 21222 356778888888877653
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=6.9e-13 Score=136.94 Aligned_cols=251 Identities=11% Similarity=0.045 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHHcCCCcCHhhHHHHHHHHH-------ccCCh-------HHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 048794 665 EMGLDLFTTMKNAGCAPDISTYNLLLDGYG-------KSGRV-------EELLKLYEEMSFRGCKPNTISHNIVISGLVK 730 (967)
Q Consensus 665 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 730 (967)
++|+..|++++... +.+...|..++..+. +.|++ ++|..+|++++..-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888898888764 346777888877765 35776 8999999999983123455688889999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChh-cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCCHHHHH
Q 048794 731 SNSIDKAMDLFYNLVSGGFSPTPC-TYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFG-KTGDVETAC 808 (967)
Q Consensus 731 ~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~ 808 (967)
.|++++|..+|+++++.. +.+.. +|..++..+.+.|++++|+.+|+++++.. +++...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999863 22333 78888999999999999999999999864 334556665554432 368999999
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 809 ELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNG-LDA--DTISYNFMINGLGRSGRIEEALSLFDEM 884 (967)
Q Consensus 809 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 884 (967)
.+|+++++. .|+ ...+..++..+.+.|++++|..+|++++... ++| ....|..++..+...|+.++|..+++++
T Consensus 190 ~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999884 454 6788889999999999999999999999852 344 4567888888899999999999999999
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccce
Q 048794 885 KKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQ 933 (967)
Q Consensus 885 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~ 933 (967)
.+. .|.+.... .+... .--.+++.++|+++.. +.||
T Consensus 268 ~~~-~p~~~~~~-~~~~~-----------~~r~~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 268 FTA-FREEYEGK-ETALL-----------VDRYKFMDLYPCSASELKALG 304 (308)
T ss_dssp HHH-TTTTTSSC-HHHHH-----------HTTTCBTTBCSSCHHHHHTTT
T ss_pred HHH-cccccccc-hHHHH-----------HHHHHhcccCCCCHHHHHhcC
Confidence 864 33222221 11111 2222888899999987 5665
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.58 E-value=1.1e-14 Score=153.82 Aligned_cols=275 Identities=16% Similarity=0.055 Sum_probs=188.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcC---HhhHHHHHHHHHccCChHHHHHHHHHHHhC----C-CCCChhhHHH
Q 048794 652 NYLIHGLLEVHATEMGLDLFTTMKNAGCAPD---ISTYNLLLDGYGKSGRVEELLKLYEEMSFR----G-CKPNTISHNI 723 (967)
Q Consensus 652 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~ 723 (967)
...+..+...|++++|+..|+++++..+... ...+..++..+...|++++|+.+++++... + .+....++..
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3445566677777777777777776532211 245666777777777777777777776543 1 0111335666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CC----ChhcHHHHHHHHHcCCC--------------------HHHHHHHHHH
Q 048794 724 VISGLVKSNSIDKAMDLFYNLVSGGF-SP----TPCTYGPLIDGLSKSGR--------------------LEEAKKLFEE 778 (967)
Q Consensus 724 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~ 778 (967)
++.++...|++++|...+++++.... .. ...++..++..|...|+ +++|+..+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 77777778888888887777665310 01 12366777888888888 8888888887
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048794 779 MLDY----GCKP-NCVIYNILINGFGKTGDVETACELFKQMIKGG-IRPD----LKSYSVLVDCLCMVGRVDDALHYFEE 848 (967)
Q Consensus 779 ~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 848 (967)
+.+. +..+ ...++..++.++...|++++|+..++++++.. ..++ ..++..++.++...|++++|..++++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7542 1111 13378888899999999999999999987520 0112 24778889999999999999999999
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHhHHHHHHHHHhcCCHHHHHHhhcC
Q 048794 849 LKLN----GLDA-DTISYNFMINGLGRSGRIEEALSLFDEMKKR----GISPD-LYTYNSLILNLGRAGMVEEARKLAGG 918 (967)
Q Consensus 849 ~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 918 (967)
+++. +..+ ...++..++.++...|++++|...++++.+. +.++. ..++..++.++...|++++|..++++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 8742 1011 1457788999999999999999999988742 11111 35777899999999999999999999
Q ss_pred CCcCCCCc
Q 048794 919 NCFVQPSE 926 (967)
Q Consensus 919 ~l~~~p~~ 926 (967)
++++.|+.
T Consensus 329 a~~~~~~~ 336 (338)
T 3ro2_A 329 HLEISREV 336 (338)
T ss_dssp HHHC----
T ss_pred HHHHHHhh
Confidence 99887753
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=3.6e-13 Score=139.05 Aligned_cols=224 Identities=12% Similarity=0.082 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-------cCCH-------HHHHHHHHHHHhCCCCCChhcHHHHHHHHHc
Q 048794 700 EELLKLYEEMSFRGCKPNTISHNIVISGLVK-------SNSI-------DKAMDLFYNLVSGGFSPTPCTYGPLIDGLSK 765 (967)
Q Consensus 700 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 765 (967)
++|+..|++++... +.+...|..++..+.. .|++ ++|...|++++..-.+.....|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 78899999999864 5567788888887763 5875 8999999999984234556688999999999
Q ss_pred CCCHHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH-hcCCHHH
Q 048794 766 SGRLEEAKKLFEEMLDYGCKP-NCV-IYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLC-MVGRVDD 841 (967)
Q Consensus 766 ~g~~~~A~~~~~~~~~~~~~~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~-~~g~~~~ 841 (967)
.|++++|..+|+++++. .| +.. +|..++..+.+.|++++|..+|+++++. .|+ ...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999985 34 344 8999999999999999999999999984 343 455554444433 3699999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC--HHhHHHHHHHHHhcCCHHHHHHhhcC
Q 048794 842 ALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRG-ISPD--LYTYNSLILNLGRAGMVEEARKLAGG 918 (967)
Q Consensus 842 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 918 (967)
|..+|+++++.. +.+...+..++..+.+.|++++|..+|+++++.. ++|+ ..+|..++..+...|++++|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999753 4477889999999999999999999999999742 4553 47889999999999999999999999
Q ss_pred CCcCCCCcccc
Q 048794 919 NCFVQPSEFVS 929 (967)
Q Consensus 919 ~l~~~p~~~~~ 929 (967)
+++..|+++..
T Consensus 267 a~~~~p~~~~~ 277 (308)
T 2ond_A 267 RFTAFREEYEG 277 (308)
T ss_dssp HHHHTTTTTSS
T ss_pred HHHHccccccc
Confidence 99999998763
No 63
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=7.9e-13 Score=129.88 Aligned_cols=200 Identities=14% Similarity=0.058 Sum_probs=145.4
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHH
Q 048794 682 DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLID 761 (967)
Q Consensus 682 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 761 (967)
+...+..++..+...|++++|+.+|+++.... +.+...+..++.++...|++++|...+++++... +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34456666667777777777777777776653 3345566677777777777777777777777653 334556777788
Q ss_pred HHHcC-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 048794 762 GLSKS-GRLEEAKKLFEEMLDYGCKPN-CVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGR 838 (967)
Q Consensus 762 ~~~~~-g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 838 (967)
++... |++++|+..++++.+.+..|+ ..++..++.++...|++++|+..++++++. .|+ ...+..++.++...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCC
Confidence 88888 888888888888877222233 457788888888888888888888888773 444 6778888888888888
Q ss_pred HHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 839 VDDALHYFEELKLNGLD-ADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 839 ~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
+++|...++++++.. + .+...+..++..+...|+.++|..+++.+.+
T Consensus 163 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 888888888887653 3 4666677777778888888888888888775
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.57 E-value=5e-14 Score=151.19 Aligned_cols=303 Identities=11% Similarity=0.006 Sum_probs=215.9
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhcCC-CCCH--HHHHHHHH--HHHhcCChHHHH-----------HHHHHHHHcCCCcC
Q 048794 619 IKLFCRQKKALAAKDLFVKFTENLGV-TSTL--EMYNYLIH--GLLEVHATEMGL-----------DLFTTMKNAGCAPD 682 (967)
Q Consensus 619 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~--~~~~~l~~--~~~~~~~~~~A~-----------~~~~~~~~~~~~~~ 682 (967)
.....+.++.++|..++.++....+. ..+. ..+..++. ...-.+..+.+. +.++.+... +++
T Consensus 19 w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~ 96 (383)
T 3ulq_A 19 WYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QAR 96 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THH
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCC
Confidence 34567899999999999998654433 2333 33333322 111223333333 555555432 112
Q ss_pred Hhh------HHHHHHHHHccCChHHHHHHHHHHHhCCCC-C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC
Q 048794 683 IST------YNLLLDGYGKSGRVEELLKLYEEMSFRGCK-P----NTISHNIVISGLVKSNSIDKAMDLFYNLVSG--GF 749 (967)
Q Consensus 683 ~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~ 749 (967)
... +...+..+...|++++|+..|+++...... + ...++..++.+|...|++++|+..+.+++.. ..
T Consensus 97 ~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 176 (383)
T 3ulq_A 97 LTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH 176 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence 222 233777889999999999999999874111 1 2357788899999999999999999998875 11
Q ss_pred C----CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHhC---
Q 048794 750 S----PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGC-KPNC----VIYNILINGFGKTGDVETACELFKQMIKG--- 817 (967)
Q Consensus 750 ~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 817 (967)
. ....++..++.+|...|++++|+..++++++... .++. .++..++.+|...|++++|+..++++++.
T Consensus 177 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 177 EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 1 1234678899999999999999999999875311 1122 37888999999999999999999998871
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC
Q 048794 818 -GIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNG---LDA-DTISYNFMINGLGRSGR---IEEALSLFDEMKKRG 888 (967)
Q Consensus 818 -~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~ 888 (967)
+..|. ..++..++.++...|++++|..+++++++.. -.| ....+..++.++...|+ +++|+..+++. +
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~ 333 (383)
T 3ulq_A 257 SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---M 333 (383)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---T
T ss_pred hccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---c
Confidence 22255 5788999999999999999999999987521 022 22335678899999999 77777777766 2
Q ss_pred CCCC-HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCc
Q 048794 889 ISPD-LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSE 926 (967)
Q Consensus 889 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 926 (967)
..|+ ..++..++.++...|++++|..++++++++...-
T Consensus 334 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 334 LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 3333 3677889999999999999999999988765543
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.56 E-value=1.1e-13 Score=151.76 Aligned_cols=214 Identities=11% Similarity=-0.037 Sum_probs=184.9
Q ss_pred ChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCCh-HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048794 663 ATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRV-EELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLF 741 (967)
Q Consensus 663 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 741 (967)
.+++++..++...... +.+...+..++..+...|++ ++|+..|+++++.. +.+..++..++.+|...|++++|+..|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4778888888776543 34778899999999999999 99999999999875 446788999999999999999999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHcC---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------CCH
Q 048794 742 YNLVSGGFSPTPCTYGPLIDGLSKS---------GRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKT--------GDV 804 (967)
Q Consensus 742 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~ 804 (967)
++++... |+...+..++.+|... |++++|+..|+++++.. +.+...|..++.+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9999875 4467889999999999 99999999999999874 33677999999999988 999
Q ss_pred HHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048794 805 ETACELFKQMIKGGIRP----DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSL 880 (967)
Q Consensus 805 ~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 880 (967)
++|+..|+++++ ..| +..++..++.+|...|++++|...|+++++.+ +.+..++..++.++...|++++|++.
T Consensus 238 ~~A~~~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 238 QQALSAYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 456 57899999999999999999999999999854 44677889999999999999999887
Q ss_pred HHHH
Q 048794 881 FDEM 884 (967)
Q Consensus 881 ~~~~ 884 (967)
+.++
T Consensus 315 ~~~~ 318 (474)
T 4abn_A 315 KGKT 318 (474)
T ss_dssp TTTC
T ss_pred hccc
Confidence 6444
No 66
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.56 E-value=4.7e-14 Score=138.80 Aligned_cols=210 Identities=10% Similarity=0.006 Sum_probs=156.5
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048794 715 KPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNIL 794 (967)
Q Consensus 715 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 794 (967)
+.|+..+...+..+...|++++|+..|++++...++++...+..++.++...|++++|+..++++++.. +.+..+|..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 345677888888888999999999999998887543666677778888999999999999999988863 2245588888
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHH
Q 048794 795 INGFGKTGDVETACELFKQMIKGGIRPD-L-------KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA--DTISYNFM 864 (967)
Q Consensus 795 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l 864 (967)
+.+|...|++++|+..|+++++. .|+ . .++..++.++...|++++|+..|+++++.+ +. ...++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHH
Confidence 88899999999999999998883 554 4 457788888888999999999999988753 22 35677788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeee
Q 048794 865 INGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIY 936 (967)
Q Consensus 865 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~ 936 (967)
+.+|...|+ ..++++... .+.+...+.. ......+.+++|+.+++++++++|+++.. ..++.+.
T Consensus 160 ~~~~~~~~~-----~~~~~a~~~-~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGA-----DVLRKATPL-ASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH-----HHHHHHGGG-TTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHhc-ccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 888865553 334555433 2223333322 23445677899999999999999999987 4565554
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=7e-14 Score=152.12 Aligned_cols=273 Identities=13% Similarity=0.057 Sum_probs=212.8
Q ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CcCHhhHH
Q 048794 615 VVPIIKLFCRQKKALAAKDLFVKFTENLGVTST--LEMYNYLIHGLLEVHATEMGLDLFTTMKNA----GC-APDISTYN 687 (967)
Q Consensus 615 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~ 687 (967)
+..++..+...|++++|...|++.+......+. ..++..++..+...|++++|+..+++.++. +. .....++.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 446788999999999999999999876322211 247788899999999999999999988764 11 22355788
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCC-----CCCChhhHHHHHHHHHhcCC-----------------HHHHHHHHHHHH
Q 048794 688 LLLDGYGKSGRVEELLKLYEEMSFRG-----CKPNTISHNIVISGLVKSNS-----------------IDKAMDLFYNLV 745 (967)
Q Consensus 688 ~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~~~ 745 (967)
.++..+...|++++|+..|+++.... .+....++..++.+|...|+ +++|+..+++++
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 89999999999999999999987641 11223477888899999999 999999998876
Q ss_pred hC----C-CCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048794 746 SG----G-FSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCK-PN----CVIYNILINGFGKTGDVETACELFKQMI 815 (967)
Q Consensus 746 ~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 815 (967)
.. + .+....++..++.+|...|++++|+..++++.+.... ++ ..++..++.+|...|++++|+..+++++
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 53 1 1222347888999999999999999999998763111 12 2278889999999999999999999987
Q ss_pred hCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 816 KGGI-RPD----LKSYSVLVDCLCMVGRVDDALHYFEELKLN----GLDA-DTISYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 816 ~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
.... ..+ ..++..++.++...|++++|..++++++.. +..+ ...++..++.+|...|++++|...+++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 6210 011 467889999999999999999999998752 1011 24578889999999999999999999998
Q ss_pred Hc
Q 048794 886 KR 887 (967)
Q Consensus 886 ~~ 887 (967)
+.
T Consensus 371 ~~ 372 (411)
T 4a1s_A 371 QL 372 (411)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 68
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.55 E-value=2.7e-11 Score=135.80 Aligned_cols=225 Identities=11% Similarity=0.014 Sum_probs=140.4
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHH
Q 048794 701 ELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAM-DLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEM 779 (967)
Q Consensus 701 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 779 (967)
....+|++++... +.....|...+..+...|+.++|. .+|++++.. .+.+...+...+....+.|+++.|.++|+++
T Consensus 327 Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445666666553 445566666666666677777775 777777654 2334445556666777777777777777777
Q ss_pred HHCCC---------CCC------------HHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcC
Q 048794 780 LDYGC---------KPN------------CVIYNILINGFGKTGDVETACELFKQMIKG-GIRPDLKSYSVLVDCLCMVG 837 (967)
Q Consensus 780 ~~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g 837 (967)
++... .|+ ..+|...+....+.|+.+.|..+|.++++. + .+....|...+....+.+
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhC
Confidence 65210 121 225666666666777777788888877763 1 112234444444444443
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CH-HhHHHHHHHHHhcCCHHHHHH
Q 048794 838 -RVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISP-DL-YTYNSLILNLGRAGMVEEARK 914 (967)
Q Consensus 838 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~-~~~~~l~~~~~~~g~~~~A~~ 914 (967)
+.+.|..+|+.+++. .+.++..+...++.....|+.+.|..+|++++....++ +. ..|..++..-...|+.+.+.+
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 477788887777764 34455666667777777777888888888777531111 12 566677777777787778888
Q ss_pred hhcCCCcCCCCcccc
Q 048794 915 LAGGNCFVQPSEFVS 929 (967)
Q Consensus 915 ~~~~~l~~~p~~~~~ 929 (967)
+.+++.+..|+++..
T Consensus 563 v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 563 LEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHHHSTTCCHH
T ss_pred HHHHHHHhCCCCcHH
Confidence 888888777776653
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.53 E-value=4.6e-14 Score=151.48 Aligned_cols=291 Identities=10% Similarity=-0.007 Sum_probs=208.3
Q ss_pred HHhcCChHHHHHHHHHHHHc--CCCcCH--hhHHHHHHH--HHccCChHHHH-----------HHHHHHHhCCCCCChhh
Q 048794 658 LLEVHATEMGLDLFTTMKNA--GCAPDI--STYNLLLDG--YGKSGRVEELL-----------KLYEEMSFRGCKPNTIS 720 (967)
Q Consensus 658 ~~~~~~~~~A~~~~~~~~~~--~~~~~~--~~~~~l~~~--~~~~g~~~~A~-----------~~~~~~~~~~~~~~~~~ 720 (967)
+.+.+++++|..+++++.+. ..+.+. ..+..++.. ....+..+.+. +.++.+... +.+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchh
Confidence 44789999999999988764 222233 333333221 12223333443 566665442 112122
Q ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC---ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CC-
Q 048794 721 ------HNIVISGLVKSNSIDKAMDLFYNLVSG--GFSP---TPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCK-PN- 787 (967)
Q Consensus 721 ------~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~- 787 (967)
+...+..+...|++++|+..+++++.. ..+. ...++..++.+|...|++++|+..++++++.... ++
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 223677788999999999999999875 1111 2357889999999999999999999998763111 11
Q ss_pred ----HHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC
Q 048794 788 ----CVIYNILINGFGKTGDVETACELFKQMIKG----GIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN----GL 854 (967)
Q Consensus 788 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~ 854 (967)
..+++.++.+|...|++++|+..|+++++. +..+. ..++..++.+|...|++++|+.+++++++. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 247889999999999999999999998862 11111 257889999999999999999999999861 22
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CCC-HHhHHHHHHHHHhcCC---HHHHHHhhcCCCcCCCCc
Q 048794 855 -DADTISYNFMINGLGRSGRIEEALSLFDEMKKRG--I-SPD-LYTYNSLILNLGRAGM---VEEARKLAGGNCFVQPSE 926 (967)
Q Consensus 855 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~l~~~p~~ 926 (967)
+....++..++.++...|++++|...++++++.. . .|. ...+..++.++...|+ +++|+.++++. ...|..
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~ 338 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADL 338 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHH
Confidence 2345678899999999999999999999987421 0 122 2335678889999999 99999999988 333433
Q ss_pred ccc-ccceeeeccCCCcccccchhhh
Q 048794 927 FVS-SELQVIYAENPRATSLSHKHCE 951 (967)
Q Consensus 927 ~~~-~~l~~~~~~~g~~~~~~~~~~~ 951 (967)
... ..||.+|...|++++|..-+.+
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~ 364 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLK 364 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 334 5899999999999998874433
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=1.8e-13 Score=144.26 Aligned_cols=272 Identities=14% Similarity=0.076 Sum_probs=209.8
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc-CHhhHHH
Q 048794 616 VPIIKLFCRQKKALAAKDLFVKFTENLGVTST--LEMYNYLIHGLLEVHATEMGLDLFTTMKNA----GCAP-DISTYNL 688 (967)
Q Consensus 616 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~ 688 (967)
...+..+...|++++|...|++.+......+. ...+..++..+...|++++|+..+++.++. +..| ...++..
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 45678899999999999999999876322221 357778899999999999999999887653 1111 2556788
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCC--------------------HHHHHHHHHH
Q 048794 689 LLDGYGKSGRVEELLKLYEEMSFRGCK-PN----TISHNIVISGLVKSNS--------------------IDKAMDLFYN 743 (967)
Q Consensus 689 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~ 743 (967)
++..+...|++++|+..++++...... ++ ..++..++..+...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 899999999999999999998764211 12 2367788889999999 9999999988
Q ss_pred HHhC----C-CCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHH
Q 048794 744 LVSG----G-FSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGC-KPN----CVIYNILINGFGKTGDVETACELFKQ 813 (967)
Q Consensus 744 ~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~ 813 (967)
++.. + .+....++..++..+...|++++|+..++++.+... .++ ..++..++.++...|++++|+..+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7653 1 112234678889999999999999999999875311 112 23788899999999999999999999
Q ss_pred HHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048794 814 MIKG----GIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN----GLDA-DTISYNFMINGLGRSGRIEEALSLFDE 883 (967)
Q Consensus 814 ~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 883 (967)
+++. +..+. ..++..++.++...|++++|..+++++++. +..+ ...++..++.+|...|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 8762 11111 457788999999999999999999998752 1011 244778899999999999999999999
Q ss_pred HHHc
Q 048794 884 MKKR 887 (967)
Q Consensus 884 ~~~~ 887 (967)
+.+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 9863
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=1.7e-14 Score=150.18 Aligned_cols=205 Identities=17% Similarity=0.142 Sum_probs=121.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCC
Q 048794 720 SHNIVISGLVKSNSIDKAMDLFYNLVSG-------GFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY------GCKP 786 (967)
Q Consensus 720 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~ 786 (967)
++..++.++...|++++|...+++++.. ..+....++..++.+|...|++++|+..++++.+. +..|
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3344444444444444444444444432 11222345667777777888888888888777653 1112
Q ss_pred -CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------
Q 048794 787 -NCVIYNILINGFGKTGDVETACELFKQMIKG------GIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN------ 852 (967)
Q Consensus 787 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 852 (967)
...++..++.++...|++++|+..++++++. +..|. ..++..++.++...|++++|..+++++++.
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 2346778888888888888888888888762 11333 356778888888889999998888888742
Q ss_pred -CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCC
Q 048794 853 -GLDAD-------TISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQP 924 (967)
Q Consensus 853 -~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 924 (967)
...+. ...+..++..+...+.+.+|...++.+... .+....++..++.++...|++++|+.++++++++.|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 11111 112223334445566666777777777642 222347788899999999999999999999988877
Q ss_pred C
Q 048794 925 S 925 (967)
Q Consensus 925 ~ 925 (967)
+
T Consensus 310 ~ 310 (311)
T 3nf1_A 310 Q 310 (311)
T ss_dssp -
T ss_pred c
Confidence 5
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.51 E-value=7.6e-14 Score=158.61 Aligned_cols=174 Identities=17% Similarity=0.134 Sum_probs=149.4
Q ss_pred CCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHH
Q 048794 750 SPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSV 828 (967)
Q Consensus 750 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ 828 (967)
+.+..++..++.+|.+.|++++|++.|+++++.. +.+..+|..++.+|.+.|++++|++.|+++++ +.|+ ..++..
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~n 82 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSN 82 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 3345678889999999999999999999999864 22567899999999999999999999999998 5676 688999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 048794 829 LVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGM 908 (967)
Q Consensus 829 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 908 (967)
++.+|...|++++|++.|+++++.+ +.+..++..++.+|...|++++|+..|+++++. .|.+..++..++.++...|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL-KPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHhhhhhHHHhccc
Confidence 9999999999999999999999853 346788999999999999999999999999974 34456889999999999999
Q ss_pred HHHHHHhhcCCCcCCCCccc
Q 048794 909 VEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 909 ~~~A~~~~~~~l~~~p~~~~ 928 (967)
+++|++.+++++++.|+...
T Consensus 161 ~~~A~~~~~kal~l~~~~~~ 180 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVADQLE 180 (723)
T ss_dssp CTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhHHh
Confidence 99999999999988887654
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.51 E-value=4.9e-14 Score=160.18 Aligned_cols=163 Identities=17% Similarity=0.119 Sum_probs=147.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048794 787 NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMI 865 (967)
Q Consensus 787 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 865 (967)
+..+|+.++.+|.+.|++++|++.|+++++ ..|+ ..++..++.+|.+.|++++|+..|+++++.+ +....++..++
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 355899999999999999999999999999 5777 6899999999999999999999999999854 44678999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCCccc
Q 048794 866 NGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPRATS 944 (967)
Q Consensus 866 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~~~~ 944 (967)
.+|...|++++|++.|+++++. .+.+..++..++.++...|++++|++.++++++++|+++.+ .+||.+|...|++++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l-~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI-NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999999974 34456999999999999999999999999999999999998 699999999999999
Q ss_pred ccchhhhhh
Q 048794 945 LSHKHCEYL 953 (967)
Q Consensus 945 ~~~~~~~~~ 953 (967)
|...+.+.+
T Consensus 164 A~~~~~kal 172 (723)
T 4gyw_A 164 YDERMKKLV 172 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887555443
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.51 E-value=1.8e-10 Score=129.18 Aligned_cols=472 Identities=10% Similarity=0.033 Sum_probs=252.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---HHHHHHHH
Q 048794 349 GEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADR---VDEAWEMF 425 (967)
Q Consensus 349 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~ 425 (967)
.+-...++.....+ +-|...|..++..+.+.+.++.+..+++.++.. .+.....|...+....+.+. .+.+..+|
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 34444444444433 567788888888887778888888888888765 35556677777777777777 88888888
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-CC-cHHHHHHHHHHHH---------h
Q 048794 426 CRMKDMK-LAPTVVTYNTLLSGLGKEGQV--------QKAIELFEGMTD-HGC-FP-NTVTFNTLLHCLC---------K 484 (967)
Q Consensus 426 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~---------~ 484 (967)
++..... ..|++..|...+....+.++. +...++|+..+. .|. .+ +..+|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 8877643 136777777766655544432 233456665543 344 33 3456665554432 2
Q ss_pred cCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHH
Q 048794 485 NEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLA 564 (967)
Q Consensus 485 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 564 (967)
+++++.+..+|+.++......-..+|......-...+ ...+..++.+. ...+..|...+
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~--------------------~~~y~~Ar~~~ 265 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVN-QLTARRHIGEL--------------------SAQYMNARSLY 265 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH--------------------HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcC-cchHHHHHHHh--------------------hHHHHHHHHHH
Confidence 2345667777777765321111222222211111000 01111111110 11222232222
Q ss_pred HHHHhhcCCCcchhhHhhhhhhhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCC
Q 048794 565 KCSIYQIGTRAERQFWQDLVGGILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGV 644 (967)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 644 (967)
+..-.. ..++... -|..... ....+.|............+.+ |-.+.+..+.
T Consensus 266 ~e~~~~-------------~~~l~r~-~p~~~~~----~~~~~~p~~~~~~~~ql~lW~~----------yi~fEk~~~~ 317 (679)
T 4e6h_A 266 QDWLNI-------------TKGLKRN-LPITLNQ----ATESNLPKPNEYDVQQLLIWLE----------WIRWESDNKL 317 (679)
T ss_dssp HHHHHH-------------TTTCCCC-CCSSSTT----CCTTTSCCTTCCCHHHHHHHHH----------HHHHHHTCTT
T ss_pred HHHHHH-------------HHhHhhc-ccccccc----chhccCCCCchhHHHHHHHHHH----------HHHHHHhCCc
Confidence 211100 0000000 0000000 0000111111100011111110 0001011000
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHH-HHHHHHHhCCCCCChhhHHH
Q 048794 645 TSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELL-KLYEEMSFRGCKPNTISHNI 723 (967)
Q Consensus 645 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~ 723 (967)
..... .....+..+|++.+... +.....|...+..+...|+.++|. .+|+++.... +.+...+..
T Consensus 318 ~l~~~------------~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~ 383 (679)
T 4e6h_A 318 ELSDD------------LHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFS 383 (679)
T ss_dssp CCCHH------------HHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cccch------------hhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 00000 01123445666666543 335666777777777777777776 7777777653 445555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC----------CCC-----------ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 048794 724 VISGLVKSNSIDKAMDLFYNLVSGG----------FSP-----------TPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY 782 (967)
Q Consensus 724 l~~~~~~~~~~~~A~~~~~~~~~~~----------~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 782 (967)
.+......|+++.|.++|++++... .+. ...+|...+....+.|..+.|..+|.++.+.
T Consensus 384 ~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 384 LSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666677777777777777776531 111 1235667777777788888888888888874
Q ss_pred CCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CH
Q 048794 783 GCKPNCVIYNILINGFGKT-GDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA--DT 858 (967)
Q Consensus 783 ~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~ 858 (967)
........|...+....+. ++.+.|..+|++.++. .|+ ...+...+......|+.+.|..+|++++....++ ..
T Consensus 464 ~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~ 541 (679)
T 4e6h_A 464 KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK 541 (679)
T ss_dssp GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHH
T ss_pred cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 1122344555555554444 4588888888888874 343 5556677777777888888888888888753221 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048794 859 ISYNFMINGLGRSGRIEEALSLFDEMKKR 887 (967)
Q Consensus 859 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 887 (967)
..|..++..-...|+.+.+.++.+++.+.
T Consensus 542 ~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 542 MIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46677777777888888888888888864
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.46 E-value=8.2e-13 Score=125.14 Aligned_cols=171 Identities=19% Similarity=0.137 Sum_probs=145.5
Q ss_pred hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 048794 754 CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDC 832 (967)
Q Consensus 754 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 832 (967)
..+..++..+...|++++|+..++++.+.. +.+..++..++.++...|++++|+..++++++. .| +..++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 456677888888999999999998887753 346778888999999999999999999998874 44 46788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 048794 833 LCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEA 912 (967)
Q Consensus 833 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 912 (967)
+...|++++|.++++++.+.. +.+...+..++.++...|++++|...++++.+. .+.+..++..++.++...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL-RPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998753 457778888999999999999999999999875 455678889999999999999999
Q ss_pred HHhhcCCCcCCCCcccc
Q 048794 913 RKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 913 ~~~~~~~l~~~p~~~~~ 929 (967)
..+++++++++|+++..
T Consensus 164 ~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 164 LPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHcCCCchhh
Confidence 99999999999998875
No 76
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.45 E-value=1.5e-12 Score=132.94 Aligned_cols=213 Identities=13% Similarity=0.023 Sum_probs=152.3
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhcHHHHHHHHHcCCCHHHH
Q 048794 698 RVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSG----GFSP-TPCTYGPLIDGLSKSGRLEEA 772 (967)
Q Consensus 698 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A 772 (967)
++++|+..|+++ +..|...|++++|...|.+++.. +.++ ...++..++.+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 466777776665 23456677777777777766653 1111 135677888888888888888
Q ss_pred HHHHHHHHHCCCC-CC----HHHHHHHHHHHhcc-CCHHHHHHHHHHHHhCCCCC---C----HHHHHHHHHHHHhcCCH
Q 048794 773 KKLFEEMLDYGCK-PN----CVIYNILINGFGKT-GDVETACELFKQMIKGGIRP---D----LKSYSVLVDCLCMVGRV 839 (967)
Q Consensus 773 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~p---~----~~~~~~l~~~~~~~g~~ 839 (967)
+..|+++++.... .+ ..++..++.+|... |++++|+..|+++++. .| + ..++..++.++...|++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 8888888753111 11 34788899999986 9999999999998872 22 1 35678889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HhHHHHHHHHH--h
Q 048794 840 DDALHYFEELKLNGLDADT------ISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL------YTYNSLILNLG--R 905 (967)
Q Consensus 840 ~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~ 905 (967)
++|+..|+++++....... ..+..++.++...|++++|...++++++ +.|+. ..+..++..+. .
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~ 252 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGD 252 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCC
Confidence 9999999999875322211 2567888999999999999999999884 44442 13445555554 4
Q ss_pred cCCHHHHHHhhcCCCcCCCCcccc
Q 048794 906 AGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 906 ~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.+++++|++.+++++.++|.+...
T Consensus 253 ~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 253 SEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp TTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHHHHhccCCccHHHHHHH
Confidence 578999999999999999988654
No 77
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.44 E-value=4.4e-13 Score=149.28 Aligned_cols=117 Identities=18% Similarity=0.249 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHH---cCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 048794 53 YSYNGFIHFILQSGFCREALAVYKRVVS---EGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICI 129 (967)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 129 (967)
.+|+++|..|.+.|+.++|..+|+.|.+ .|+.||..+||+||.++++.|++++|.++|++|...|+.||+.+|+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4677777777777777777777766543 3567777777777777777777777777777777777777777777777
Q ss_pred HHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048794 130 RILGRAGK-IDEAYRILKRMDDEGCGPDVVTYTVLIDALCT 169 (967)
Q Consensus 130 ~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 169 (967)
.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 77777776 46777777777777777777777777655444
No 78
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.43 E-value=1.8e-13 Score=152.25 Aligned_cols=120 Identities=13% Similarity=0.129 Sum_probs=108.6
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHH---cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048794 85 PSLKTYSALMVAAGKRRNIKTVMNLLEEMER---LGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYT 161 (967)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 161 (967)
....+|+++|++|++.|++++|..+|.+|.+ .|+.||+.+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3445799999999999999999999988763 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 048794 162 VLIDALCTAGRL-DQAKEIFLKMKASSHQPDQVTYITLLDKFSD 204 (967)
Q Consensus 162 ~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 204 (967)
++|.++++.|+. ++|.++|++|...|+.||..+|+.++..+.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 999999999985 7899999999999999999999988865544
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.43 E-value=2.9e-12 Score=136.96 Aligned_cols=296 Identities=16% Similarity=0.067 Sum_probs=200.3
Q ss_pred HhhccHHHHHHHHHHHHHhcC-CCCCH--HHHHHHHHH--HHhcCChHHHH---------HHHHHHHHcCCCcC----Hh
Q 048794 623 CRQKKALAAKDLFVKFTENLG-VTSTL--EMYNYLIHG--LLEVHATEMGL---------DLFTTMKNAGCAPD----IS 684 (967)
Q Consensus 623 ~~~~~~~~a~~~~~~~~~~~~-~~~~~--~~~~~l~~~--~~~~~~~~~A~---------~~~~~~~~~~~~~~----~~ 684 (967)
...++.++|..+++++..... ...+. ..+..+... ..-.+....+. ..++.+.....+.+ ..
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~ 102 (378)
T 3q15_A 23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYY 102 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHH
Confidence 789999999999988754332 22333 333433321 11112222222 44544433210111 11
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC----CCh
Q 048794 685 TYNLLLDGYGKSGRVEELLKLYEEMSFRGCK-PN----TISHNIVISGLVKSNSIDKAMDLFYNLVSG--GFS----PTP 753 (967)
Q Consensus 685 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~----~~~ 753 (967)
.+...+..+...|++++|+..|+++...... ++ ..++..++.+|...|+++.|+..+.+++.. ... ...
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 3445667778899999999999998764211 22 346778888899999999999999888764 111 123
Q ss_pred hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHh-----CCCCCC-
Q 048794 754 CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGC-KPN----CVIYNILINGFGKTGDVETACELFKQMIK-----GGIRPD- 822 (967)
Q Consensus 754 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~- 822 (967)
.++..++.+|...|++++|+..|+++++... .++ ..++..++.+|...|++++|+..++++++ . .|.
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~ 260 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV--PDLL 260 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC--GGGH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC--ChhH
Confidence 4677888999999999999999998875310 012 23788899999999999999999999886 3 343
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HH
Q 048794 823 LKSYSVLVDCLCMVGRVDDALHYFEELKLNGL---DAD-TISYNFMINGLGRSGR---IEEALSLFDEMKKRGISPD-LY 894 (967)
Q Consensus 823 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~ 894 (967)
..++..++.++...|++++|..+++++++... .+. ...+..+...+...|+ +.+|+..+++. +..|+ ..
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~ 337 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEA 337 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHH
Confidence 56788899999999999999999999885210 222 3345667777888888 77777777663 23333 36
Q ss_pred hHHHHHHHHHhcCCHHHHHHhhcCCCcCC
Q 048794 895 TYNSLILNLGRAGMVEEARKLAGGNCFVQ 923 (967)
Q Consensus 895 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 923 (967)
.+..++..+...|++++|..++++++++.
T Consensus 338 ~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 338 CARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 67788999999999999999999887543
No 80
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=1e-12 Score=136.68 Aligned_cols=240 Identities=14% Similarity=0.101 Sum_probs=162.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhC------
Q 048794 646 STLEMYNYLIHGLLEVHATEMGLDLFTTMKNA-------GCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFR------ 712 (967)
Q Consensus 646 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 712 (967)
....++..++..+...|++++|+.+++++++. .......++..++..+...|++++|+.+++++...
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 33556677777778888888888888777763 22234556777888888889999888888887754
Q ss_pred C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-CCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC--
Q 048794 713 G-CKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSG------G-FSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY-- 782 (967)
Q Consensus 713 ~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 782 (967)
+ .+....++..++.++...|++++|...+++++.. + .+....++..++.++...|++++|+..++++.+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1 1222456777888888899999999888888764 1 1223456788899999999999999999998764
Q ss_pred ----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhC-------CCCCCH-------HHHHHHHHHHHhcCCHHHHH
Q 048794 783 ----GCKPN-CVIYNILINGFGKTGDVETACELFKQMIKG-------GIRPDL-------KSYSVLVDCLCMVGRVDDAL 843 (967)
Q Consensus 783 ----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~p~~-------~~~~~l~~~~~~~g~~~~A~ 843 (967)
+..|. ..++..++.+|...|++++|+..++++++. ...|.. ..+..++..+...+.+.+|.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 11222 347888999999999999999999998862 112221 12223344445566677777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 844 HYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
..++.+.... +....++..++.+|...|++++|.++++++++
T Consensus 265 ~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 265 GWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7887776532 33567888999999999999999999999885
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.42 E-value=1.1e-11 Score=121.76 Aligned_cols=210 Identities=10% Similarity=0.000 Sum_probs=166.9
Q ss_pred cCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHH
Q 048794 681 PDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLI 760 (967)
Q Consensus 681 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 760 (967)
.+...+..++..+...|++++|+..|++++...++++...+..++.++...|++++|+..+++++... +....++..++
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45678889999999999999999999999998644788888889999999999999999999999874 44567889999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 048794 761 DGLSKSGRLEEAKKLFEEMLDYGCKPNC-------VIYNILINGFGKTGDVETACELFKQMIKGGIRPD---LKSYSVLV 830 (967)
Q Consensus 761 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~ 830 (967)
.+|...|++++|+..++++++.. +.+. .+|..++.++...|++++|+..|+++++ ..|+ ..++..++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence 99999999999999999999864 2345 4688899999999999999999999998 4676 46888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048794 831 DCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNL 903 (967)
Q Consensus 831 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 903 (967)
.+|...|+ ..++++...+ ..+...+.. ......|.+++|...++++++. .|.+..+...+..+.
T Consensus 161 ~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l-~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGA-----DVLRKATPLA-SSNKEKYAS--EKAKADAAFKKAVDYLGEAVTL-SPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHH-----HHHHHHGGGT-TTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHhcc-cCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHH
Confidence 99876543 4455555542 334444433 3345677899999999999974 344456666555443
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=1.7e-11 Score=130.98 Aligned_cols=271 Identities=13% Similarity=-0.012 Sum_probs=133.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHh----hHHHHHHHHHccCChHHHHHHHHHHHhCCCCC-Ch----hhHHHHH
Q 048794 655 IHGLLEVHATEMGLDLFTTMKNAGCAPDIS----TYNLLLDGYGKSGRVEELLKLYEEMSFRGCKP-NT----ISHNIVI 725 (967)
Q Consensus 655 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~----~~~~~l~ 725 (967)
+..+...|++++|...+++.+......+.. ++..++..+...|++++|...++++....... +. .++..++
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334445556666666655555443211111 33444555555666666666666554421110 11 1234455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCC--C-ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC----CHHHHHHH
Q 048794 726 SGLVKSNSIDKAMDLFYNLVSG----GFS--P-TPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKP----NCVIYNIL 794 (967)
Q Consensus 726 ~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l 794 (967)
..+...|++++|...+++++.. +.+ + ....+..++.++...|++++|...+++.++..... ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 5556666666666666655543 111 1 12334455566666666666666666665432110 12345556
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHH
Q 048794 795 INGFGKTGDVETACELFKQMIKGGIRPD--LKSYS----VLVDCLCMVGRVDDALHYFEELKLNGLDA---DTISYNFMI 865 (967)
Q Consensus 795 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~ 865 (967)
+.++...|++++|...++++......++ ..... ..+.++...|++++|..+++++......+ ....+..++
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 6666666666666666666554211111 11111 22334556666666666666655422111 122344556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCCCCH-HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCC
Q 048794 866 NGLGRSGRIEEALSLFDEMKKR----GISPDL-YTYNSLILNLGRAGMVEEARKLAGGNCFVQPS 925 (967)
Q Consensus 866 ~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 925 (967)
.++...|++++|...++++... |.+++. ..+..++.++...|++++|...+++++.+.+.
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 6666666666666666665421 111111 24455566666666666666666666655443
No 83
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.41 E-value=7.8e-14 Score=125.74 Aligned_cols=144 Identities=9% Similarity=-0.064 Sum_probs=111.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048794 794 LINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSG 872 (967)
Q Consensus 794 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 872 (967)
|+.++...|++++|++.+++... ..|+ ...+..++.+|...|++++|++.|+++++.+ +.+..++..++.+|...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 56677778888888888888876 3555 4567788888888899999999998888753 446778888888999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHH-hhcCCCcCCCCcccc-ccceeeeccCCC
Q 048794 873 RIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARK-LAGGNCFVQPSEFVS-SELQVIYAENPR 941 (967)
Q Consensus 873 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~-~~l~~~~~~~g~ 941 (967)
++++|+..|+++++. .|.+..++..++.++.+.|++++|.+ +++++++++|+|+.+ ..++.++...|+
T Consensus 80 ~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVEL-NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999988864 34456888888888888888877655 458889999998887 477777777764
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.41 E-value=1.5e-11 Score=131.35 Aligned_cols=233 Identities=10% Similarity=-0.013 Sum_probs=172.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC-c----CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCC-C-----Chh
Q 048794 651 YNYLIHGLLEVHATEMGLDLFTTMKNAGCA-P----DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCK-P-----NTI 719 (967)
Q Consensus 651 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-----~~~ 719 (967)
+...+..+...|++++|+..|+++.+.... + ...++..++..|...|++++|+..++++...... + ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 334556677888999999888888764111 1 2346778888899999999999999888764211 1 134
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCChhcHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCCCCCHH
Q 048794 720 SHNIVISGLVKSNSIDKAMDLFYNLVSG----GF-SPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLD-----YGCKPNCV 789 (967)
Q Consensus 720 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 789 (967)
++..++.+|...|++++|...+.+++.. +. .....++..++.+|...|++++|+..++++++ .. +....
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHH
Confidence 6678888899999999999999888764 11 11234678889999999999999999999987 42 22356
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCC---CCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGG---IRPD-LKSYSVLVDCLCMVGR---VDDALHYFEELKLNGLDADTISYN 862 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~ 862 (967)
++..++.+|...|++++|+..++++++.. ..|. ...+..+...+...|+ +.+|+.++++.. ..+.....+.
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~ 340 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHH
Confidence 88899999999999999999999988731 1233 3456677777778888 788888877622 1122345677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 863 FMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
.++.+|...|++++|...++++.+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999999999874
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.40 E-value=1.3e-12 Score=133.55 Aligned_cols=236 Identities=14% Similarity=0.047 Sum_probs=166.2
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--C-CHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHH
Q 048794 701 ELLKLYEEMSFRGCKPNTISHNIVISGLVKS--N-SIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFE 777 (967)
Q Consensus 701 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 777 (967)
+|.++++++.+.- +++...+ . +... + ++++|...|.++ +..|...|++++|+..|+
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-~----~~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-K----LFSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-H----HHSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred cHHHHHHHHHHHh-CcCCCcc-h----hcCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 4667777777652 3322222 2 2232 2 488898888876 456888999999999999
Q ss_pred HHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhc-CCHHHHHHHH
Q 048794 778 EMLDY----GCKPN-CVIYNILINGFGKTGDVETACELFKQMIKGG---IRPD--LKSYSVLVDCLCMV-GRVDDALHYF 846 (967)
Q Consensus 778 ~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~p~--~~~~~~l~~~~~~~-g~~~~A~~~~ 846 (967)
++.+. +.+++ ..+|+.++.+|...|++++|+..|+++++.. -.+. ..++..++.+|... |++++|+..|
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~ 141 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCY 141 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 98763 21112 3589999999999999999999999998621 0111 35788999999996 9999999999
Q ss_pred HHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HhHHHHHHHHHhcCCHHHHHHh
Q 048794 847 EELKLNGLD-AD----TISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL------YTYNSLILNLGRAGMVEEARKL 915 (967)
Q Consensus 847 ~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~ 915 (967)
+++++.... .+ ..++..++.++...|++++|+..++++.+....... ..+..++.++...|++++|+..
T Consensus 142 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 221 (292)
T 1qqe_A 142 ELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART 221 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999863100 11 356888999999999999999999999974221111 1567889999999999999999
Q ss_pred hcCCCcCCCCcccc------ccceeeec--cCCCcccccchhhhhhcccc
Q 048794 916 AGGNCFVQPSEFVS------SELQVIYA--ENPRATSLSHKHCEYLASSC 957 (967)
Q Consensus 916 ~~~~l~~~p~~~~~------~~l~~~~~--~~g~~~~~~~~~~~~~~~~~ 957 (967)
+++++.++|+.+.. ..++..|. ..++++++...+.+.+..+|
T Consensus 222 ~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 222 LQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp HHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 99999999998764 13445443 45667777775544444444
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.40 E-value=9.6e-13 Score=132.42 Aligned_cols=189 Identities=9% Similarity=-0.023 Sum_probs=114.8
Q ss_pred hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC---C-HHHH
Q 048794 754 CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPN---CVIYNILINGFGKTGDVETACELFKQMIKGGIRP---D-LKSY 826 (967)
Q Consensus 754 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~-~~~~ 826 (967)
..+..++..+.+.|++++|+..|+++++..+. + ..++..++.+|...|++++|+..|+++++. .| . ..++
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~ 92 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQAE 92 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHHH
Confidence 34444555555555555555555555543211 2 334555555555555555555555555552 22 1 2344
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHHH-----------------HHHHHHHHHhcCCHHHHHHHH
Q 048794 827 SVLVDCLCM--------VGRVDDALHYFEELKLNGLDADTIS-----------------YNFMINGLGRSGRIEEALSLF 881 (967)
Q Consensus 827 ~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~-----------------~~~l~~~~~~~g~~~~A~~~~ 881 (967)
..++.++.. .|++++|+..|+++++.. +.+... +..++.+|...|++++|+..|
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 555555555 555555555555555421 111111 256788888888888888888
Q ss_pred HHHHHcCCCC---CHHhHHHHHHHHHhc----------CCHHHHHHhhcCCCcCCCCcccc----ccceeeeccCCCccc
Q 048794 882 DEMKKRGISP---DLYTYNSLILNLGRA----------GMVEEARKLAGGNCFVQPSEFVS----SELQVIYAENPRATS 944 (967)
Q Consensus 882 ~~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~l~~~p~~~~~----~~l~~~~~~~g~~~~ 944 (967)
+++++. .|. ....+..++.++... |++++|+..++++++.+|+++.+ ..++.++...|++++
T Consensus 172 ~~~l~~-~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 172 EAVFDA-YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHH-CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 888863 222 235777888888766 88888999999998888988765 267888877777766
Q ss_pred ccc
Q 048794 945 LSH 947 (967)
Q Consensus 945 ~~~ 947 (967)
...
T Consensus 251 ~~~ 253 (261)
T 3qky_A 251 DAS 253 (261)
T ss_dssp CTT
T ss_pred hhH
Confidence 544
No 87
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.38 E-value=9.7e-13 Score=124.65 Aligned_cols=173 Identities=14% Similarity=0.044 Sum_probs=150.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048794 789 VIYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMING 867 (967)
Q Consensus 789 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 867 (967)
..+..++..+...|++++|+..++++++. .| +..++..++.++...|++++|..+++++++.. +.+..++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 46788899999999999999999999874 44 47889999999999999999999999999753 4577889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCCccccc
Q 048794 868 LGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPRATSLS 946 (967)
Q Consensus 868 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~~~~~~ 946 (967)
+...|++++|.+.++++.+. .+.+...+..++.++...|++++|+..++++++.+|+++.+ ..+|.+|...|++++|.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999875 45677899999999999999999999999999999999887 69999999999999998
Q ss_pred chhhhhhcccccccccccc
Q 048794 947 HKHCEYLASSCTFVCPYNV 965 (967)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~ 965 (967)
..+.+.+..+|...-...+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~ 183 (186)
T 3as5_A 165 PHFKKANELDEGASVELAL 183 (186)
T ss_dssp HHHHHHHHHHHCCCGGGGG
T ss_pred HHHHHHHHcCCCchhhHhh
Confidence 8555666666655544444
No 88
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.38 E-value=1.9e-12 Score=124.44 Aligned_cols=168 Identities=14% Similarity=0.152 Sum_probs=120.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHH----------------HHHHHhccCCHHHHHHHHHHHHhCCCC
Q 048794 758 PLIDGLSKSGRLEEAKKLFEEMLDYGCKP-NCVIYNI----------------LINGFGKTGDVETACELFKQMIKGGIR 820 (967)
Q Consensus 758 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~~~~~~~~ 820 (967)
..+..+...|++++|+..|+++++. .| +...|.. ++.+|...|++++|+..|+++++ ..
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~ 84 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KA 84 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HC
Confidence 3444555566666666666666553 22 2334444 88889999999999999999988 46
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHhHH
Q 048794 821 PD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGR--IEEALSLFDEMKKRGISPDLYTYN 897 (967)
Q Consensus 821 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~ 897 (967)
|+ ..++..++.++...|++++|+..|+++++.+ +.+..++..++.+|...|+ ...+...++.+.. .+|....+.
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~ 161 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARY 161 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHH
Confidence 65 6788899999999999999999999998854 4467788889988877664 4556666666642 233334566
Q ss_pred HHHHHHHhcCCHHHHHHhhcCCCcCCCCccccccc
Q 048794 898 SLILNLGRAGMVEEARKLAGGNCFVQPSEFVSSEL 932 (967)
Q Consensus 898 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~l 932 (967)
.++.++...|++++|+..++++++++|++.....|
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l 196 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77888888899999999999999999986554333
No 89
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.34 E-value=5.2e-12 Score=145.12 Aligned_cols=176 Identities=9% Similarity=-0.054 Sum_probs=141.0
Q ss_pred HcCCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 048794 764 SKSGRLEEAKKLFEEML--------DYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLC 834 (967)
Q Consensus 764 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 834 (967)
...|++++|++.++++. +.. +.+...+..++.++...|++++|++.|+++++. .|+ ..+++.++.++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHH
Confidence 67788899999998888 432 335668888899999999999999999998883 565 678889999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 048794 835 MVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARK 914 (967)
Q Consensus 835 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 914 (967)
..|++++|+..|+++++.+ +.+...+..++.++...|++++ +..|+++++. .+.+..++..++.++.+.|++++|+.
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~-~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST-NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh-CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998753 3467788889999999999999 9999999874 34456888999999999999999999
Q ss_pred hhcCCCcCCCCcccc-ccceeeeccCCCcccc
Q 048794 915 LAGGNCFVQPSEFVS-SELQVIYAENPRATSL 945 (967)
Q Consensus 915 ~~~~~l~~~p~~~~~-~~l~~~~~~~g~~~~~ 945 (967)
.++++++++|+++.+ +.++.+|...|+.+++
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~ 587 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEV 587 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------C
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCC
Confidence 999999999999887 6888888877764443
No 90
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.33 E-value=1.3e-10 Score=124.01 Aligned_cols=301 Identities=13% Similarity=0.014 Sum_probs=211.7
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cC----HhhH
Q 048794 616 VPIIKLFCRQKKALAAKDLFVKFTENLGVTSTL----EMYNYLIHGLLEVHATEMGLDLFTTMKNAGCA-PD----ISTY 686 (967)
Q Consensus 616 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~ 686 (967)
..++..+...|++++|...+++.+...+ ..+. .++..++..+...|++++|...+++....... .+ ..++
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4556778889999999999999876543 2222 25667778888999999999999988764211 11 2335
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCC----CC--CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CChhc
Q 048794 687 NLLLDGYGKSGRVEELLKLYEEMSFRG----CK--PN-TISHNIVISGLVKSNSIDKAMDLFYNLVSGGFS----PTPCT 755 (967)
Q Consensus 687 ~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~ 755 (967)
..++..+...|++++|...++++.... .+ |. ...+..++.++...|++++|...+++.+..... .....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 678888999999999999999987642 11 21 235566888899999999999999998875221 12345
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHH-----HHHHHHhccCCHHHHHHHHHHHHhCCCCCC---HHHH
Q 048794 756 YGPLIDGLSKSGRLEEAKKLFEEMLDYGCKP-NCVIYN-----ILINGFGKTGDVETACELFKQMIKGGIRPD---LKSY 826 (967)
Q Consensus 756 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~ 826 (967)
+..++.++...|++++|...++++......+ ....+. ..+..+...|++++|...+++.......+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 7788899999999999999999987531121 111222 233457789999999999999876422111 2356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 048794 827 SVLVDCLCMVGRVDDALHYFEELKL----NGLDADT-ISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLIL 901 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 901 (967)
..++.++...|++++|...+++++. .+..+.. .++..++.++...|++++|...+++++... + .. ....
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-~-~~----g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA-N-RT----GFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-H-HH----CCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh-c-cc----cHHH
Confidence 7889999999999999999999874 2211122 367778999999999999999999987421 1 00 0112
Q ss_pred HHHhcCCHHHHHHhhcCCCcCCCC
Q 048794 902 NLGRAGMVEEARKLAGGNCFVQPS 925 (967)
Q Consensus 902 ~~~~~g~~~~A~~~~~~~l~~~p~ 925 (967)
.+...| +....++++.+...|-
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHHcc--HHHHHHHHHHHhCCCC
Confidence 233333 4555666666666664
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.32 E-value=1e-11 Score=127.00 Aligned_cols=227 Identities=18% Similarity=0.144 Sum_probs=131.0
Q ss_pred HccCChHHHHHHHHHHHhC-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-CCCChhcHHHH
Q 048794 694 GKSGRVEELLKLYEEMSFR-------GCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSG------G-FSPTPCTYGPL 759 (967)
Q Consensus 694 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l 759 (967)
...|++++|+.+|++++.. +.+....++..++.++...|++++|+..+++++.. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4556777777776666542 11223446677777777788888888877777654 1 12233566777
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHC-----CC-CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC------CCCCC-HHH
Q 048794 760 IDGLSKSGRLEEAKKLFEEMLDY-----GC-KP-NCVIYNILINGFGKTGDVETACELFKQMIKG------GIRPD-LKS 825 (967)
Q Consensus 760 ~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p~-~~~ 825 (967)
+.+|...|++++|+..++++++. +. .| ...++..++.+|...|++++|+..++++++. +..|. ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 77777777777777777777653 00 12 2336777777777777777777777777652 11333 356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCC
Q 048794 826 YSVLVDCLCMVGRVDDALHYFEELKLN-------GLDA-DTISYNFMINGLGRSGR------IEEALSLFDEMKKRGISP 891 (967)
Q Consensus 826 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~ 891 (967)
+..++.++...|++++|..+++++++. ...+ ....+..+...+...+. +.++...++.... ..|
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 249 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSP 249 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCH
Confidence 667777777777777777777777642 1112 22233434444433332 2222222222110 111
Q ss_pred C-HHhHHHHHHHHHhcCCHHHHHHhhcCCCcC
Q 048794 892 D-LYTYNSLILNLGRAGMVEEARKLAGGNCFV 922 (967)
Q Consensus 892 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 922 (967)
+ ..++..++.++...|++++|+.+++++++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 255667777777777777777777776654
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.27 E-value=9.9e-11 Score=117.57 Aligned_cols=215 Identities=8% Similarity=-0.034 Sum_probs=132.2
Q ss_pred cCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhc
Q 048794 681 PDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPN---TISHNIVISGLVKSNSIDKAMDLFYNLVSGGFS--PTPCT 755 (967)
Q Consensus 681 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~ 755 (967)
.+...+..++..+.+.|++++|+..|++++... +.+ ..++..++.+|...|++++|+..|++++...+. ....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 355666677777777777777777777777653 222 345666666677777777777777776665221 12344
Q ss_pred HHHHHHHHHc--------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048794 756 YGPLIDGLSK--------SGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYS 827 (967)
Q Consensus 756 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 827 (967)
+..++.++.. .|++++|+..|+++++..+. +...+..+... ..+... -...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~--------------~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKI--------------RELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHH--------------HHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHH--------------HHHHHH----HHHHHH
Confidence 5566666666 66666666666666664211 21122111111 000000 011247
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCH--
Q 048794 828 VLVDCLCMVGRVDDALHYFEELKLNGLDA--DTISYNFMINGLGRS----------GRIEEALSLFDEMKKRGISPDL-- 893 (967)
Q Consensus 828 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~-- 893 (967)
.++.+|...|++++|+..|+++++..... ...++..++.+|... |++++|...++++++. .|.+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~ 231 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI-FPDSPLL 231 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH-CTTCTHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH-CCCChHH
Confidence 78899999999999999999988642111 345788888888866 8899999999999864 33332
Q ss_pred -HhHHHHHHHHHhcCCHHHHHHhh
Q 048794 894 -YTYNSLILNLGRAGMVEEARKLA 916 (967)
Q Consensus 894 -~~~~~l~~~~~~~g~~~~A~~~~ 916 (967)
.....+..++...|+++++..+.
T Consensus 232 ~~a~~~l~~~~~~~~~~~~~~~~~ 255 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEGDASLA 255 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHh
Confidence 34455666666667766655443
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.25 E-value=1.1e-10 Score=113.92 Aligned_cols=190 Identities=9% Similarity=-0.032 Sum_probs=113.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH--HHHHHH
Q 048794 719 ISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSP--TPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNC--VIYNIL 794 (967)
Q Consensus 719 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l 794 (967)
..+...+..+...|++++|+..|++++...+.. ....+..++.+|.+.|++++|+..|+++++..+.... .++..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 345556666667777777777777766643221 1245666667777777777777777777664322111 145555
Q ss_pred HHHHhc------------------cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048794 795 INGFGK------------------TGDVETACELFKQMIKGGIRPDL-KSYSVLVDCLCMVGRVDDALHYFEELKLNGLD 855 (967)
Q Consensus 795 ~~~~~~------------------~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 855 (967)
+.++.. .|++++|+..|+++++. .|+. .+...+..+.. +...
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~----------~~~~------- 145 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVF----------LKDR------- 145 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHH----------HHHH-------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHH----------HHHH-------
Confidence 555543 33445555555555442 3331 11111000000 0000
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 856 ADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL---YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 856 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.......++..|...|++++|+..|+++++. .|.++ .++..++.++.+.|++++|++.++++....|++...
T Consensus 146 -~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 146 -LAKYEYSVAEYYTERGAWVAVVNRVEGMLRD-YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 0011245788889999999999999999864 33333 568889999999999999999999998888888876
No 94
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.24 E-value=1.7e-11 Score=106.16 Aligned_cols=114 Identities=16% Similarity=0.066 Sum_probs=88.3
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 048794 819 IRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYN 897 (967)
Q Consensus 819 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 897 (967)
+.|+ ...+..+|..|.+.|++++|++.|+++++.+ +.+..++..++.+|...|++++|+..++++++. -+.+..+|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRL-DSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-hhhhhHHHH
Confidence 5666 3677788888888888888888888888753 446777888888888888888888888888864 344567888
Q ss_pred HHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-cccee
Q 048794 898 SLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQV 934 (967)
Q Consensus 898 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~ 934 (967)
.++.++...|++++|++.++++++++|+|+.+ ..|+.
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 88888888888888888888888888888876 34443
No 95
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.24 E-value=7.1e-11 Score=120.59 Aligned_cols=227 Identities=15% Similarity=0.073 Sum_probs=160.5
Q ss_pred hcCChHHHHHHHHHHHHc-------CCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhC------CC-CCChhhHHHHH
Q 048794 660 EVHATEMGLDLFTTMKNA-------GCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFR------GC-KPNTISHNIVI 725 (967)
Q Consensus 660 ~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~ 725 (967)
..|++++|+..|++.++. ..+....++..++..+...|++++|+.+|+++... +. +....++..++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 455666666666655542 22234667888999999999999999999998864 11 22345788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC------C-CCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCC-CHHHH
Q 048794 726 SGLVKSNSIDKAMDLFYNLVSG------G-FSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY------GCKP-NCVIY 791 (967)
Q Consensus 726 ~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~ 791 (967)
.++...|++++|...+++++.. . .+....++..++.+|...|++++|+..++++.+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998875 1 1234567889999999999999999999999874 1122 24478
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH--HC---CCCCCH
Q 048794 792 NILINGFGKTGDVETACELFKQMIKG-------GIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELK--LN---GLDADT 858 (967)
Q Consensus 792 ~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~---~~~~~~ 858 (967)
..++.+|...|++++|+..++++++. ...|. ...+..+...+...+....+..+..... .. ..+...
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 89999999999999999999999862 12333 2344555555554444333333222111 11 111234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 859 ISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 859 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
.++..++.+|...|++++|..+++++++
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5788899999999999999999999874
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.24 E-value=1.8e-11 Score=110.08 Aligned_cols=144 Identities=9% Similarity=-0.040 Sum_probs=89.1
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc
Q 048794 759 LIDGLSKSGRLEEAKKLFEEMLDYGCKPN-CVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMV 836 (967)
Q Consensus 759 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 836 (967)
|+.++...|++++|+..++++... .|+ ...+..++.+|.+.|++++|++.|+++++ ..|+ ..++..++.+|...
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 455566666777777777766653 222 23556677777777777777777777776 3554 56677777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 048794 837 GRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSL-FDEMKKRGISPDLYTYNSLILNLGRAGM 908 (967)
Q Consensus 837 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 908 (967)
|++++|+..|+++++.+ +.++.++..++.+|.+.|++++|.+. ++++++. .|.++.++...+..+...|+
T Consensus 79 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-STTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHhCc
Confidence 77777777777777642 33566677777777777777665554 4666653 23344666666666666553
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.23 E-value=1e-10 Score=112.36 Aligned_cols=192 Identities=9% Similarity=0.017 Sum_probs=133.9
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHH
Q 048794 682 DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNT-ISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLI 760 (967)
Q Consensus 682 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 760 (967)
+...+...+..+...|++++|+..|++++... |+. ..+... ..... ..........++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-----~~~~~--------------~~~~~~~~~~lg 61 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWT-----NVDKN--------------SEISSKLATELA 61 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHH-----HSCTT--------------SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHh-----hhcch--------------hhhhHHHHHHHH
Confidence 34455566777788888888888888887763 222 222110 00000 011112334588
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC-
Q 048794 761 DGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGR- 838 (967)
Q Consensus 761 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~- 838 (967)
.+|.+.|++++|+..|+++++.. +.+...+..++.++...|++++|+..|+++++ ..|+ ..++..++.+|...|+
T Consensus 62 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 62 LAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHH
Confidence 89999999999999999999864 33677999999999999999999999999998 4676 6889999998876654
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 048794 839 -VDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLIL 901 (967)
Q Consensus 839 -~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 901 (967)
.+++...++++.. .+|....+..++.++...|++++|+..|+++++ +.|+......+..
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 4556677766653 233334556678888889999999999999985 6788766555444
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.23 E-value=9.6e-11 Score=134.61 Aligned_cols=172 Identities=12% Similarity=-0.019 Sum_probs=101.5
Q ss_pred HccCChHHHHHHHHHHH--------hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHc
Q 048794 694 GKSGRVEELLKLYEEMS--------FRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSK 765 (967)
Q Consensus 694 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 765 (967)
...|++++|++.++++. ... +.+...+..++.++...|++++|+..|+++++.+ +.+...+..++.+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 55677777777777766 332 3344456666666666666666666666666542 3344556666666666
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 048794 766 SGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALH 844 (967)
Q Consensus 766 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 844 (967)
.|++++|+..|+++++.. +.+...|..++.++.+.|++++ ++.|+++++ ..|+ ..++..++.++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666666643 2244566666666666666666 666666666 3443 4566666666666666666666
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 048794 845 YFEELKLNGLDA-DTISYNFMINGLGRSGR 873 (967)
Q Consensus 845 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 873 (967)
.|+++++. .| ...++..++.++...|+
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 66666653 33 34455556666555443
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.22 E-value=4.8e-10 Score=110.55 Aligned_cols=186 Identities=14% Similarity=0.078 Sum_probs=117.7
Q ss_pred HHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 048794 737 AMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCK-PNCVIYNILINGFGKTGDVETACELFKQMI 815 (967)
Q Consensus 737 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 815 (967)
|+..+++.+..+ +++..++..++.++...|++++|++++.+.+..+.. -+...+..++.++.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666543 333444556777777778888888888777665421 234466677777778888888888888877
Q ss_pred hCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 816 KGGIRP-----DLKSYSVLVDC--LCMVG--RVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 816 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
+ ..| +..+...|+.+ ....| ++.+|..+|+++.+. .|+......+..++.+.|++++|.+.++.+.+
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6 356 24444445433 44444 777888888887653 34422222222367778888888888776553
Q ss_pred c-----C----CCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 887 R-----G----ISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 887 ~-----~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
. . -+.++.++..++.+....|+ +|.++++++.+.+|+||..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 1 0 03344666666666666676 7778888888888888773
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.20 E-value=2.7e-10 Score=100.92 Aligned_cols=133 Identities=16% Similarity=0.198 Sum_probs=81.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLG 869 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 869 (967)
.|..++..+...|++++|+..++++++.+ +.+...+..++.++...|++++|..+++++...+ +.+...+..++.++.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34555666666666666666666666531 2234556666666666666666666666666532 334555666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCC
Q 048794 870 RSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPS 925 (967)
Q Consensus 870 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 925 (967)
..|++++|.+.++++.+. .+.+...+..++.++...|++++|..++++++..+|+
T Consensus 81 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALEL-DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 666677776666666653 2334566666666666667777777777666666665
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.20 E-value=1.6e-09 Score=104.17 Aligned_cols=174 Identities=14% Similarity=0.058 Sum_probs=114.7
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC----CHHHHHHHH
Q 048794 701 ELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSG----RLEEAKKLF 776 (967)
Q Consensus 701 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 776 (967)
+|+.+|+++.+.| +..++..++..|...+++++|+.+|+++.+.+ ++..+..++..|.. + ++++|++.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4555666666543 55566666666666666677777666666643 34456666666666 5 677777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh----cCCHHHHHHH
Q 048794 777 EEMLDYGCKPNCVIYNILINGFGK----TGDVETACELFKQMIKGGIRPD---LKSYSVLVDCLCM----VGRVDDALHY 845 (967)
Q Consensus 777 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~ 845 (967)
+++.+. .+...+..++.+|.. .+++++|+..|+++.+. .|+ ..+++.|+.+|.. .+++++|+.+
T Consensus 77 ~~A~~~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 77 EKAVEA---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD--SESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHT---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS--TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHC---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc--CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 777664 256677777777766 66777777777777764 232 5677777777776 6677777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 048794 846 FEELKLNGLDADTISYNFMINGLGRS-G-----RIEEALSLFDEMKKRG 888 (967)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 888 (967)
|+++.+. ++++..+..|+.+|... | ++++|..+|+++.+.|
T Consensus 152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7777764 23444566677776543 2 6777777777777654
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.16 E-value=7.3e-11 Score=115.16 Aligned_cols=188 Identities=12% Similarity=0.000 Sum_probs=122.7
Q ss_pred hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH----HHH
Q 048794 753 PCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPN--CVIYNILINGFGKTGDVETACELFKQMIKGGIRPDL----KSY 826 (967)
Q Consensus 753 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~ 826 (967)
...+..++..+.+.|++++|+..|+++++..+... ...+..++.+|.+.|++++|+..|+++++. .|+. .++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34566677888888888888888888887532211 247778888888888888888888888873 4442 366
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-H-----------
Q 048794 827 SVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-Y----------- 894 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~----------- 894 (967)
..++.++...|.. . ...+..++..+...|++++|+..|+++++. .|+. .
T Consensus 82 ~~~g~~~~~~~~~-----~------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~ 142 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----A------------LQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFL 142 (225)
T ss_dssp HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh-----h------------hhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHH
Confidence 7777777653210 0 000111222233344455555555554431 2221 1
Q ss_pred ------hHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc---c-ccceeeeccCCCcccccchhhhhhcccccccc
Q 048794 895 ------TYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV---S-SELQVIYAENPRATSLSHKHCEYLASSCTFVC 961 (967)
Q Consensus 895 ------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~-~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 961 (967)
....++..+.+.|++++|+..++++++..|+++. + ..++.+|.+.|++++|...........|+.+-
T Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 143 KDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 1245788899999999999999999999999974 3 58999999999999998855554555555443
No 103
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.16 E-value=1.4e-10 Score=119.40 Aligned_cols=158 Identities=11% Similarity=-0.007 Sum_probs=74.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC----C-CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHH
Q 048794 727 GLVKSNSIDKAMDLFYNLVSGGF----S-PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGC---KPN--CVIYNILIN 796 (967)
Q Consensus 727 ~~~~~~~~~~A~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~ 796 (967)
.|...|++++|...|.+++.... + ....++..++.+|...|++++|+..|+++++... .+. ..++..++.
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555666666666655554310 0 0123445555555555566666655555543200 011 124555555
Q ss_pred HHhccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHH
Q 048794 797 GFGKTGDVETACELFKQMIKG----GIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN----GLDAD-TISYNFMIN 866 (967)
Q Consensus 797 ~~~~~~~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~ 866 (967)
+|.. |++++|+..|+++++. +..+. ..++..++.+|...|++++|+..|+++++. +..+. ...+..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 5555 5555555555555441 00000 234455555555555555555555555531 10000 123444445
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 048794 867 GLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 867 ~~~~~g~~~~A~~~~~~~~ 885 (967)
++...|++++|...+++++
T Consensus 204 ~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHh
Confidence 5555555555555555554
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.15 E-value=2.6e-10 Score=129.12 Aligned_cols=150 Identities=11% Similarity=-0.050 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 048794 732 NSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELF 811 (967)
Q Consensus 732 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 811 (967)
|++++|+..++++++.. +.+...+..++..|...|++++|++.|+++++.. +.+...+..++.+|...|++++|++.|
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45555666665555542 2334455555555656666666666666655542 123445555555555566666666666
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHH
Q 048794 812 KQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRS---GRIEEALSLFDEMKK 886 (967)
Q Consensus 812 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 886 (967)
+++++. .|+ ...+..++.++...|++++|.+.++++++.+ +.+...+..++.++... |++++|.+.++++++
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 665552 333 4555555666666666666666666555532 22444555555555555 566666666665554
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.15 E-value=3.4e-11 Score=122.25 Aligned_cols=159 Identities=16% Similarity=0.080 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 048794 789 VIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISY-NFMIN 866 (967)
Q Consensus 789 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~ 866 (967)
..+..++..+...|++++|+..|++++. ..|+ ..++..++.++...|++++|...++++... .|+.... ...+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~ 193 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHH
Confidence 3455555555555555555555555555 2343 445555555555555555555555555442 2332222 22222
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCc--ccc-ccceeeeccCCCcc
Q 048794 867 GLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSE--FVS-SELQVIYAENPRAT 943 (967)
Q Consensus 867 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~-~~l~~~~~~~g~~~ 943 (967)
.+...|+.++|+..++++++. .|.+...+..++.++...|++++|+..++++++.+|++ ..+ ..|+.+|...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~-~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAE-NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhc-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 344555555555555555543 23334555555555555556666666666555555555 333 35555555555555
Q ss_pred cccchhhhh
Q 048794 944 SLSHKHCEY 952 (967)
Q Consensus 944 ~~~~~~~~~ 952 (967)
++...+.+.
T Consensus 273 ~a~~~~r~a 281 (287)
T 3qou_A 273 ALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 555533333
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.12 E-value=3e-09 Score=102.27 Aligned_cols=176 Identities=15% Similarity=0.048 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC----CHHHHHHHH
Q 048794 666 MGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSN----SIDKAMDLF 741 (967)
Q Consensus 666 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~ 741 (967)
+|+..|++..+. -+..++..++..|...+++++|+.+|+++...+ +..++..++..|.. + ++++|+.+|
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 466777777775 367778888888888899999999999988764 56777778888777 6 899999999
Q ss_pred HHHHhCCCCCChhcHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhc----cCCHHHHHHHHH
Q 048794 742 YNLVSGGFSPTPCTYGPLIDGLSK----SGRLEEAKKLFEEMLDYGCK-PNCVIYNILINGFGK----TGDVETACELFK 812 (967)
Q Consensus 742 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~ 812 (967)
+++...+ ++.++..++.+|.. .+++++|+..|+++.+.+.. .....+..|+.+|.. .+++++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9988753 45577888888887 88999999999999986421 016788899999987 789999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 048794 813 QMIKGGIRPDLKSYSVLVDCLCMV-G-----RVDDALHYFEELKLNG 853 (967)
Q Consensus 813 ~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 853 (967)
+..+. .++..+++.|+.+|... | ++++|..+|+++.+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 99884 34556788899988753 3 8999999999999865
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.11 E-value=1.9e-08 Score=100.71 Aligned_cols=221 Identities=9% Similarity=0.030 Sum_probs=143.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccC--ChHHHHHHHHHHHhCCCCCChhhHHHHHHHH----Hhc--
Q 048794 660 EVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSG--RVEELLKLYEEMSFRGCKPNTISHNIVISGL----VKS-- 731 (967)
Q Consensus 660 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~-- 731 (967)
+....++|+..+..++..++ ....+|+....++...| +++++++++..++..+ +.+..+|+.-..++ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 45 AEEYSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 33445688899988888752 35667888888888888 8999999999888875 34566676666555 444
Q ss_pred -CCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-----
Q 048794 732 -NSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLE--EAKKLFEEMLDYGCKPNCVIYNILINGFGKTGD----- 803 (967)
Q Consensus 732 -~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 803 (967)
+++++++..++++++.+ +.+-.+|.....++.+.|.++ ++++.++++++..+ .+..+|+.-..++...+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhh
Confidence 56677777777777653 334455666666666666666 77777777776543 255666666666655554
Q ss_pred -HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 048794 804 -VETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDD-ALHYFEELKLNG--LDADTISYNFMINGLGRSGRIEEAL 878 (967)
Q Consensus 804 -~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 878 (967)
++++++.+++++.. .|+ ..+|+.+..++.+.|+..+ +..+..++++.+ -..++.++..++++|.+.|+.++|.
T Consensus 201 ~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 201 TIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 66777777776663 443 5667777777766666333 334555444321 1225556666777777777777777
Q ss_pred HHHHHHHH
Q 048794 879 SLFDEMKK 886 (967)
Q Consensus 879 ~~~~~~~~ 886 (967)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777664
No 108
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.11 E-value=9.7e-09 Score=101.31 Aligned_cols=248 Identities=11% Similarity=0.029 Sum_probs=173.1
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCC
Q 048794 619 IKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGR 698 (967)
Q Consensus 619 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 698 (967)
++-.+-.|++..+..-..++ ...........+.+.+...|++... ....|...++..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~----~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKF----SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTS----SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT-
T ss_pred HHHHHHhhHHHHHHHHHHhc----CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc-
Confidence 45566788888887744332 2233344555566777777777642 12234444444444333 322
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhcHHHHHHHHHcCCCHHHHHHHHH
Q 048794 699 VEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGF-SPTPCTYGPLIDGLSKSGRLEEAKKLFE 777 (967)
Q Consensus 699 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 777 (967)
|+..+++....+ +++..++..++.++...|++++|++++.+.+..+. ......+...+.++.+.|+.+.|.+.++
T Consensus 85 ---a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 ---NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp ---CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 788888888764 45666677888999999999999999999987653 2455678888999999999999999999
Q ss_pred HHHHCCCCC-----CHHHHHHHHHH--HhccC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048794 778 EMLDYGCKP-----NCVIYNILING--FGKTG--DVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEE 848 (967)
Q Consensus 778 ~~~~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 848 (967)
++.+. .| +..+...++.+ ....| ++++|..+|+++.+. .|+..+...+..++.+.|++++|...++.
T Consensus 161 ~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 161 NYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99885 55 23444555444 44344 899999999999874 56633333333388999999999999997
Q ss_pred HHHC-----CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 048794 849 LKLN-----GL----DADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL 893 (967)
Q Consensus 849 ~~~~-----~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 893 (967)
+.+. +. +.++.++.+++.+....|+ +|.++++++.+ ..|+.
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~h 286 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEH 286 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCC
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCC
Confidence 6642 00 3366777677777777887 89999999997 44554
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.11 E-value=5.3e-09 Score=104.78 Aligned_cols=227 Identities=10% Similarity=-0.016 Sum_probs=174.9
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCChhcHHHHHHHH----HcC---C
Q 048794 697 GRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSN--SIDKAMDLFYNLVSGGFSPTPCTYGPLIDGL----SKS---G 767 (967)
Q Consensus 697 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g 767 (967)
...++|++++..++..+ +.+..+|+.-..++...+ ++++++..++.++..+ +....+|+....++ ... +
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 44468999999999875 445667888888888888 8999999999998874 33344565555555 455 7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC------
Q 048794 768 RLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVE--TACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGR------ 838 (967)
Q Consensus 768 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~------ 838 (967)
++++++.+++++++.. +.+..+|+.-..++...|.++ ++++.++++++. .| |..+|+..+.++...|+
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhh
Confidence 8899999999998875 347788888888888888888 999999999884 45 46888888888888777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCCHHhHHHHHHHHHhcCCHHHHHHh
Q 048794 839 VDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEE-ALSLFDEMKKRG--ISPDLYTYNSLILNLGRAGMVEEARKL 915 (967)
Q Consensus 839 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 915 (967)
++++++++++++..+ +.+..+|+.+..++.+.|+..+ +.....++.+.+ -+.++.++..++.++.+.|+.++|++.
T Consensus 202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 889999999988764 4577788888888888887444 445666555321 134567888888899889999999999
Q ss_pred hcCCCc-CCCCcccc
Q 048794 916 AGGNCF-VQPSEFVS 929 (967)
Q Consensus 916 ~~~~l~-~~p~~~~~ 929 (967)
++++.+ .||-....
T Consensus 281 ~~~l~~~~Dpir~~y 295 (306)
T 3dra_A 281 YDLLKSKYNPIRSNF 295 (306)
T ss_dssp HHHHHHTTCGGGHHH
T ss_pred HHHHHhccChHHHHH
Confidence 999886 78887664
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.10 E-value=3.5e-11 Score=112.13 Aligned_cols=160 Identities=14% Similarity=0.016 Sum_probs=100.9
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-
Q 048794 755 TYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCL- 833 (967)
Q Consensus 755 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~- 833 (967)
.+...+..+...|++++|+..|+++++.. +.+...+..++.++...|++++|+..+++++.. .|+......++.+.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHH
Confidence 45566777777777777777777776542 225567777777777777777777777777653 34433333333221
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHhcCCHH
Q 048794 834 CMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD---LYTYNSLILNLGRAGMVE 910 (967)
Q Consensus 834 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~ 910 (967)
...+...+|+..++++++.+ +.+...+..++.++...|++++|...++++++. .|+ ...+..++.++...|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKV--NLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CcccChHHHHHHHHHHHHHhCCCC
Confidence 22233344677777776642 335666777777777777777777777777643 332 346667777777777777
Q ss_pred HHHHhhcCCC
Q 048794 911 EARKLAGGNC 920 (967)
Q Consensus 911 ~A~~~~~~~l 920 (967)
+|...+++++
T Consensus 162 ~A~~~y~~al 171 (176)
T 2r5s_A 162 AIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 7777776554
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.09 E-value=2.5e-10 Score=106.31 Aligned_cols=161 Identities=15% Similarity=0.098 Sum_probs=99.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 048794 720 SHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILING-F 798 (967)
Q Consensus 720 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~ 798 (967)
.+...+..+...|++++|+..|++++... +.+...+..++.++...|++++|+..++++.... |+...+..++.. +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 45556666777777777777777766542 3345566667777777777777777777766542 244333332222 1
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 048794 799 GKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA-DTISYNFMINGLGRSGRIEE 876 (967)
Q Consensus 799 ~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 876 (967)
...+...+|+..++++++ ..|+ ...+..++.++...|++++|...|+++++.+..+ +...+..++.++...|+.++
T Consensus 85 ~~~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HhhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 222233346777777766 3454 5667777777777777777777777777643222 24466667777777777777
Q ss_pred HHHHHHHHH
Q 048794 877 ALSLFDEMK 885 (967)
Q Consensus 877 A~~~~~~~~ 885 (967)
|...|++++
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777665
No 112
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.09 E-value=2.8e-10 Score=101.32 Aligned_cols=102 Identities=11% Similarity=-0.107 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048794 824 KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNL 903 (967)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 903 (967)
..++.++.++...|++++|+..|++++..+ +.++..|..++.+|...|++++|+..|+++++. .|.++..|..++.++
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-GKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-SSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CCCCcHHHHHHHHHH
Confidence 455555555566666666666666655532 234555555666666666666666666665543 222335555666666
Q ss_pred HhcCCHHHHHHhhcCCCcCCCCcc
Q 048794 904 GRAGMVEEARKLAGGNCFVQPSEF 927 (967)
Q Consensus 904 ~~~g~~~~A~~~~~~~l~~~p~~~ 927 (967)
...|++++|+..+++++++.|+++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 666666666666666666655554
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.08 E-value=1.1e-09 Score=112.74 Aligned_cols=159 Identities=9% Similarity=-0.034 Sum_probs=88.8
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-CC--ChhcHHHHH
Q 048794 691 DGYGKSGRVEELLKLYEEMSFRGCKP-N----TISHNIVISGLVKSNSIDKAMDLFYNLVSGG--F-SP--TPCTYGPLI 760 (967)
Q Consensus 691 ~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~-~~--~~~~~~~l~ 760 (967)
..|...|++++|+..|.++....... + ..++..++.+|...|++++|+..|++++... . .+ ...++..++
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35556667777766666655431110 1 2245566666666677777777666665431 0 11 123455666
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHH
Q 048794 761 DGLSKSGRLEEAKKLFEEMLDYGCKP-N----CVIYNILINGFGKTGDVETACELFKQMIKG----GIRPD-LKSYSVLV 830 (967)
Q Consensus 761 ~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~ 830 (967)
.+|.. |++++|+..|+++++..... + ..++..++.+|...|++++|+..|+++++. +..+. ..++..++
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 66666 77777777777666531111 1 235666666666677777777777766652 11111 12445556
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 048794 831 DCLCMVGRVDDALHYFEELK 850 (967)
Q Consensus 831 ~~~~~~g~~~~A~~~~~~~~ 850 (967)
.++...|++++|...|++++
T Consensus 203 ~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 66666677777777776666
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.08 E-value=1e-10 Score=132.39 Aligned_cols=163 Identities=10% Similarity=0.033 Sum_probs=129.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 048794 766 SGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALH 844 (967)
Q Consensus 766 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 844 (967)
.|++++|++.|+++++.. +.+...|..++.++...|++++|++.|+++++. .|+ ..++..++.+|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478999999999999863 336779999999999999999999999999984 565 7889999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---CCHHHHHHhhcCCCc
Q 048794 845 YFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRA---GMVEEARKLAGGNCF 921 (967)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~l~ 921 (967)
.++++++.+ +.+...+..++.+|...|++++|.+.++++++. .+.+...+..++.++... |++++|.+.++++++
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL-LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999999864 446788999999999999999999999999975 445668999999999999 999999999999999
Q ss_pred CCCCcccc-ccce
Q 048794 922 VQPSEFVS-SELQ 933 (967)
Q Consensus 922 ~~p~~~~~-~~l~ 933 (967)
.+|++... ..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 99999887 4555
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.07 E-value=1.8e-09 Score=104.44 Aligned_cols=150 Identities=10% Similarity=0.007 Sum_probs=108.4
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 048794 755 TYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCL 833 (967)
Q Consensus 755 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 833 (967)
.+..++..+...|++++|+..|+++. .|+..+|..++.+|...|++++|+..|+++++. .|+ ..++..++.++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 45567777888888888888888774 457778888888888888888888888888773 444 67778888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 048794 834 CMVGRVDDALHYFEELKLNGLDADT----------------ISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYN 897 (967)
Q Consensus 834 ~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 897 (967)
...|++++|+..|+++++.. +.+. .++..++.++...|++++|...++++++ +.|+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~---- 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSEP---- 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSG----
T ss_pred HHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCccc----
Confidence 88888888888888887643 2222 5677788888888888888888888875 44544
Q ss_pred HHHHHHHhcCCHHHHHHhhcCCCcCCC
Q 048794 898 SLILNLGRAGMVEEARKLAGGNCFVQP 924 (967)
Q Consensus 898 ~l~~~~~~~g~~~~A~~~~~~~l~~~p 924 (967)
..+..++|...+++.....|
T Consensus 155 -------~~~~~~~a~~~~~~~~~~~~ 174 (213)
T 1hh8_A 155 -------RHSKIDKAMECVWKQKLYEP 174 (213)
T ss_dssp -------GGGHHHHHHHHHHTTCCCCC
T ss_pred -------ccchHHHHHHHHHhcccccc
Confidence 23456666666665544443
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.07 E-value=8e-10 Score=112.12 Aligned_cols=162 Identities=14% Similarity=0.009 Sum_probs=87.4
Q ss_pred hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHH
Q 048794 754 CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKS-YSVLVDC 832 (967)
Q Consensus 754 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~ 832 (967)
..+..++..+...|++++|+..|+++++.. +.+...+..++.++...|++++|+..++++.. ..|+... ....+..
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHHHHH
Confidence 344555555566666666666666665542 12444555666666666666666666666554 2444322 2222333
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCCHH
Q 048794 833 LCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD--LYTYNSLILNLGRAGMVE 910 (967)
Q Consensus 833 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 910 (967)
+...++.++|+..+++++..+ +.+...+..++.++...|++++|+..++++++. -|.+ ..++..++.++...|+.+
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~-~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX-DLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-ccccccchHHHHHHHHHHHcCCCC
Confidence 445555555666666655532 334555556666666666666666666666542 1111 345556666666666666
Q ss_pred HHHHhhcCCC
Q 048794 911 EARKLAGGNC 920 (967)
Q Consensus 911 ~A~~~~~~~l 920 (967)
+|...+++++
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 6666555443
No 117
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.05 E-value=2.7e-10 Score=101.98 Aligned_cols=116 Identities=14% Similarity=-0.052 Sum_probs=76.8
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048794 810 LFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRG 888 (967)
Q Consensus 810 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 888 (967)
.|++++. ..|+ ...+..++..+...|++++|+..|++++..+ +.+...+..++.++...|++++|+..|+++++.
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l- 84 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM- 84 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 3444444 3454 3566667777777777777777777776643 335666667777777777777777777777653
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 889 ISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 889 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.|.+...+..++.++...|++++|+..++++++++|++|..
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 23345667777777777777777777777777777776654
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.04 E-value=3.3e-09 Score=91.64 Aligned_cols=109 Identities=16% Similarity=0.059 Sum_probs=77.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGL 868 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 868 (967)
.+...+..|.+.|++++|+..|+++++ ..|+ ..++..++.+|...|++++|+..++++++.+ +.+..+|..++.++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 666777777777788888888877777 3454 5677777777777888888888888777653 34566777778888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 048794 869 GRSGRIEEALSLFDEMKKRGISPDLYTYNSLILN 902 (967)
Q Consensus 869 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 902 (967)
...|++++|++.|+++++. .|.+..++..++.+
T Consensus 92 ~~~~~~~~A~~~~~~al~l-~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV-DPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH-CcCCHHHHHHHHHh
Confidence 8888888888888877763 23344666555543
No 119
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=6.1e-09 Score=91.96 Aligned_cols=129 Identities=17% Similarity=0.282 Sum_probs=100.2
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048794 755 TYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLC 834 (967)
Q Consensus 755 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 834 (967)
.+..++..+...|++++|+.+++++.+.. +.+...+..++..+...|++++|+..++++.+.+ +.+...+..++.++.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45667778888888888888888887753 3356677888888888888888888888887742 234667778888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 835 MVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 835 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
..|++++|..+++++.+.. +.+..++..++.++...|++++|...++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 8888888888888888653 44567777888888888888888888888875
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.02 E-value=4.9e-10 Score=113.22 Aligned_cols=185 Identities=12% Similarity=0.048 Sum_probs=125.6
Q ss_pred ChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 048794 752 TPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLV 830 (967)
Q Consensus 752 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 830 (967)
+...+..++..+...|++++|+..|+++++.. +.+...|..++.+|...|++++|+..++++++ ..|+ ...++.++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 34566778888888899999999999888763 23677888888888899999999999999887 4565 67888889
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 048794 831 DCLCMVGRVDDALHYFEELKLNGLDA-DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMV 909 (967)
Q Consensus 831 ~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 909 (967)
.++...|++++|...|+++++.+ | +...+...++...+. .++.... .......+.+..+...++..+ .|++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~i~~~l~~l~--~~~~ 151 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKRWN-SIEERRIHQESELHSYLTRLI--AAER 151 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHHHH-HHHHTCCCCCCHHHHHHHHHH--HHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHHHH-HHHHHHHhhhHHHHHHHHHHH--HHHH
Confidence 99999999999999998887532 2 110111111121111 1112211 122223555666666665543 6889
Q ss_pred HHHHHhhcCCCcCCCCcccc-ccceeeeccC-CCcccccc
Q 048794 910 EEARKLAGGNCFVQPSEFVS-SELQVIYAEN-PRATSLSH 947 (967)
Q Consensus 910 ~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~-g~~~~~~~ 947 (967)
++|++.++++++++|++... ..++.++.+. ++++++..
T Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~ 191 (281)
T 2c2l_A 152 ERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDE 191 (281)
T ss_dssp HHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988776 4666666665 55555544
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.99 E-value=1.4e-08 Score=98.03 Aligned_cols=133 Identities=8% Similarity=-0.061 Sum_probs=98.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLG 869 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 869 (967)
.+..++..+...|++++|+..|++++ .|+..++..++.++...|++++|+..++++++.+ +.+..++..++.+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 45566777777788888888887763 4566777788888888888888888888877643 445667777888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCH----------------HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 870 RSGRIEEALSLFDEMKKRGISPDL----------------YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 870 ~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
..|++++|+..++++++. .+.+. .++..++.++...|++++|+..++++++++|++..
T Consensus 83 ~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQ-LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp HTTCHHHHHHHHHHHHHT-TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred HcccHHHHHHHHHHHHHh-CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 888888888888887763 22222 67777888888888888888888888888887654
No 122
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.98 E-value=1.9e-09 Score=104.89 Aligned_cols=136 Identities=11% Similarity=-0.098 Sum_probs=86.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA--DTISYNFMING 867 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~ 867 (967)
.+..++.++...|++++|.++|+.+... .|+....+.++.++.+.|++++|+..|+++.... .| ...++..++.+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 3444566666777777777777766652 4543366666677777777777777776554421 11 12356667777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 868 LGRSGRIEEALSLFDEMKKRGISPD--LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 868 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
+...|++++|++.|+++......|. ...+..++.++.+.|+.++|...+++++..+|+ +.+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~ 243 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKV 243 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHH
Confidence 7777777777777777764222143 256667777777777777777777777777777 443
No 123
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.96 E-value=6.8e-09 Score=100.96 Aligned_cols=204 Identities=9% Similarity=-0.050 Sum_probs=145.2
Q ss_pred ccCChHHHHHHHHHHHhCCCCCChhhHHHH-------HHHHHhcCCHHHHHHHHHHHHhCCC-----C------------
Q 048794 695 KSGRVEELLKLYEEMSFRGCKPNTISHNIV-------ISGLVKSNSIDKAMDLFYNLVSGGF-----S------------ 750 (967)
Q Consensus 695 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~-----~------------ 750 (967)
..++..+|.+.|.++.... +.....|..+ ..++...+...+++..+.+.+...+ .
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777777777777664 3345566666 4555555555666666666555210 0
Q ss_pred ---CChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHH
Q 048794 751 ---PTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD--LKS 825 (967)
Q Consensus 751 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~ 825 (967)
........++.++...|++++|.++|+.+... .|+......++..+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 00123445678889999999999999998875 3544477778888999999999999999776521 121 347
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048794 826 YSVLVDCLCMVGRVDDALHYFEELKLNGLDA--DTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNL 903 (967)
Q Consensus 826 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 903 (967)
++.++.++...|++++|+..|+++......| .......++.++.+.|+.++|...|+++.. ..|+..++..|...-
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~~~~~~aL~~~~ 251 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPEPKVAAALKDPS 251 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCCHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHHHHHHHhCCC
Confidence 8899999999999999999999998643325 345778899999999999999999999996 355555555554433
Q ss_pred H
Q 048794 904 G 904 (967)
Q Consensus 904 ~ 904 (967)
+
T Consensus 252 ~ 252 (282)
T 4f3v_A 252 Y 252 (282)
T ss_dssp C
T ss_pred C
Confidence 3
No 124
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.94 E-value=1.6e-09 Score=95.41 Aligned_cols=113 Identities=12% Similarity=-0.060 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048794 824 KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNL 903 (967)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 903 (967)
..+..++.++...|++++|...++++++.. +.+..++..++.++...|++++|...++++++. .+.+...+..++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL-EPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCchHHHHHHHHHH
Confidence 344444555555555555555555554432 223444444555555555555555555555432 222334455555555
Q ss_pred HhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeecc
Q 048794 904 GRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAE 938 (967)
Q Consensus 904 ~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~ 938 (967)
...|++++|++.++++++++|+++.+ ..++.+|..
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 55555555555555555555555444 344444433
No 125
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.94 E-value=1.3e-09 Score=97.16 Aligned_cols=108 Identities=15% Similarity=-0.035 Sum_probs=70.4
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 048794 820 RPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNS 898 (967)
Q Consensus 820 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 898 (967)
.|+ ...+..++..+...|++++|+..|++++..+ +.+...+..++.++...|++++|+..|+++++. .|.++..+..
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~ 91 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALM-DINEPRFPFH 91 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCcHHHHH
Confidence 443 3455666666777777777777777766543 335566666777777777777777777777653 2334466667
Q ss_pred HHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 899 LILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 899 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
++.++...|++++|+..++++++++|+++..
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcch
Confidence 7777777777777777777777777766654
No 126
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.92 E-value=1.7e-07 Score=95.44 Aligned_cols=161 Identities=14% Similarity=0.049 Sum_probs=92.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCh----hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 048794 725 ISGLVKSNSIDKAMDLFYNLVSGGF-SPTP----CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCK-PN----CVIYNIL 794 (967)
Q Consensus 725 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l 794 (967)
+..+...|++++|...++++..... .++. ..+..++..+...|++++|+..++++++.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4555666777777777777665421 1111 12224555666666777777777777653211 12 1256667
Q ss_pred HHHHhccCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-CHHHHHH
Q 048794 795 INGFGKTGDVETACELFKQMIK----G-GIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKL----NGLDA-DTISYNF 863 (967)
Q Consensus 795 ~~~~~~~~~~~~A~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~ 863 (967)
+.+|...|++++|+..|+++++ . +..|. ..++..++.+|...|++++|+.+++++++ .+..+ -..++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7777777777777777777663 1 11122 23566667777777777777777776653 11111 1456666
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHH
Q 048794 864 MINGLGRSG-RIEEALSLFDEMK 885 (967)
Q Consensus 864 l~~~~~~~g-~~~~A~~~~~~~~ 885 (967)
++.+|...| .+++|.+.+++++
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 777777777 3577777776665
No 127
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.92 E-value=8.7e-11 Score=122.11 Aligned_cols=157 Identities=15% Similarity=0.009 Sum_probs=119.8
Q ss_pred cCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC----------------HHHHH
Q 048794 765 KSGRLEEAKKLFEEMLDYGCKP-NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD----------------LKSYS 827 (967)
Q Consensus 765 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----------------~~~~~ 827 (967)
..+++++|+..++...+. .| +...+..++..+...|++++|+..|+++++. .|+ ..++.
T Consensus 125 ~L~~~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~ 200 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHL 200 (336)
T ss_dssp EEEEEECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHH
Confidence 456677788777776653 23 4457888888888999999999999998883 444 37788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 048794 828 VLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAG 907 (967)
Q Consensus 828 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 907 (967)
.++.+|.+.|++++|+..++++++.+ +.+..++..++.+|...|++++|+..|+++++. .|.+..++..++.++...|
T Consensus 201 nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 201 NLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-YPNNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 88888888888888888888888753 446778888888888888888888888888864 3445678888888888888
Q ss_pred CHHHH-HHhhcCCCcCCCCcc
Q 048794 908 MVEEA-RKLAGGNCFVQPSEF 927 (967)
Q Consensus 908 ~~~~A-~~~~~~~l~~~p~~~ 927 (967)
++++| ...+++++..-+.++
T Consensus 279 ~~~~a~~~~~~~~~~~~~~~~ 299 (336)
T 1p5q_A 279 RQLAREKKLYANMFERLAEEE 299 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcc
Confidence 88888 556777665544433
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.91 E-value=3.2e-09 Score=93.15 Aligned_cols=115 Identities=14% Similarity=0.058 Sum_probs=55.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGL 868 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 868 (967)
.+..++..+...|++++|+..|+++++. .| +...+..++.++...|++++|...++++++.. +.+...+..++.++
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 4444555555555555555555555442 22 23444555555555555555555555555432 22344444555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 048794 869 GRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGM 908 (967)
Q Consensus 869 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 908 (967)
...|++++|...++++.+. .+.+...+..++.++...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL-DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHHhc
Confidence 5555555555555555432 22233444444444444443
No 129
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.91 E-value=1.1e-07 Score=95.59 Aligned_cols=220 Identities=11% Similarity=0.058 Sum_probs=147.2
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCC--C
Q 048794 701 ELLKLYEEMSFRGCKPNTISHNIVISGLVKSNS----------IDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSG--R 768 (967)
Q Consensus 701 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~ 768 (967)
+|++++..++..+ |.+..+|+.-..++...+. +++++..++.++..+ +.+..+|.....++...| .
T Consensus 48 eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 48 SVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCccc
Confidence 5666666666553 2233444444433333222 466777777777653 444556666666666666 4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc----------
Q 048794 769 LEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGD-VETACELFKQMIKGGIRP-DLKSYSVLVDCLCMV---------- 836 (967)
Q Consensus 769 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---------- 836 (967)
+++++.+++++++.. +.+..+|+.-..++...|. ++++++.++++++. .| |..+|+..+.++...
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcccccccc
Confidence 788888888888764 3377788877777777777 58888888888874 45 467888877777665
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCH-HhHHHHH
Q 048794 837 ----GRVDDALHYFEELKLNGLDADTISYNFMINGLGRS-----------GRIEEALSLFDEMKKRGISPDL-YTYNSLI 900 (967)
Q Consensus 837 ----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~ 900 (967)
+.++++++++++++..+ +.+..+|+.+..++... +.++++++.++++++ +.|+. .++.+++
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~~w~l~~~~ 279 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPENKWCLLTII 279 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCcccchHHHHHH
Confidence 45788888888888753 44677777777776655 468899999999886 44554 3333333
Q ss_pred HHH---HhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 901 LNL---GRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 901 ~~~---~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
... ...|..++...++.++.++||-...
T Consensus 280 ~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~ 310 (331)
T 3dss_A 280 LLMRALDPLLYEKETLQYFSTLKAVDPMRAA 310 (331)
T ss_dssp HHHHHHCTTTTHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHhhcccccHHHHHHHHHHHHHhCcchhh
Confidence 221 2357888899999999999997655
No 130
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.91 E-value=2.3e-06 Score=93.37 Aligned_cols=201 Identities=14% Similarity=-0.012 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 666 MGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLV 745 (967)
Q Consensus 666 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 745 (967)
.+..+|++++... +.+...|...+..+.+.|+.++|..+|+++... +.+...+.. |....+.++. ++.+.
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~ 266 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHH
Confidence 3456677766643 334666777777777777777888888777766 223222221 2111111111 11111
Q ss_pred hCC------------CCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHH
Q 048794 746 SGG------------FSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTG-DVETACELFK 812 (967)
Q Consensus 746 ~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~ 812 (967)
+.- ......+|...+....+.+..+.|..+|+++ .. ...+..+|...+......+ +.+.|..+|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 110 0001123444445554555566666666666 21 1223334443333322222 4666666666
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 813 QMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 813 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
.+++. .|+ ...+...+....+.|+.+.|..+|+++. .....|...++.-...|+.+.+..++++..
T Consensus 345 ~al~~--~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 345 SGLLK--HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66553 233 3333344555555566666666666541 134445555555555566666666565554
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.90 E-value=2.6e-09 Score=99.58 Aligned_cols=119 Identities=8% Similarity=0.116 Sum_probs=56.9
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH-HHhcCCH--
Q 048794 764 SKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDC-LCMVGRV-- 839 (967)
Q Consensus 764 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~-- 839 (967)
...|++++|+..++++++.. +.+...|..++.+|...|++++|+..|+++++. .| +...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 34455555555555555432 223445555555555555555555555555542 23 23444555555 4455554
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 840 DDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 840 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
++|...++++++.+ +.+...+..++.++...|++++|...++++++
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55555555555432 22344455555555555555555555555554
No 132
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.89 E-value=2.9e-08 Score=101.26 Aligned_cols=165 Identities=15% Similarity=0.035 Sum_probs=127.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCH---H-HHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCC----HHHHH
Q 048794 758 PLIDGLSKSGRLEEAKKLFEEMLDYGCK-PNC---V-IYNILINGFGKTGDVETACELFKQMIKGGI-RPD----LKSYS 827 (967)
Q Consensus 758 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~---~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~ 827 (967)
..+..+...|++++|...++++.+.... |+. . .+..++..+...+++++|+..|+++++... .++ ..++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3466788899999999999999875221 121 1 334577788888999999999999998321 122 34689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHhH
Q 048794 828 VLVDCLCMVGRVDDALHYFEELKL----N-GLDA-DTISYNFMINGLGRSGRIEEALSLFDEMKKR----GISPD-LYTY 896 (967)
Q Consensus 828 ~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~ 896 (967)
.++.+|...|++++|+.+|+++++ . +..+ ...++..++.+|.+.|++++|...++++++. +..+. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999984 1 1112 2347889999999999999999999998732 22222 5788
Q ss_pred HHHHHHHHhcC-CHHHHHHhhcCCCcC
Q 048794 897 NSLILNLGRAG-MVEEARKLAGGNCFV 922 (967)
Q Consensus 897 ~~l~~~~~~~g-~~~~A~~~~~~~l~~ 922 (967)
..++.++.+.| ++++|+..+++++.+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999999 579999999999865
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.86 E-value=3.9e-08 Score=100.34 Aligned_cols=127 Identities=14% Similarity=0.035 Sum_probs=58.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHH
Q 048794 794 LINGFGKTGDVETACELFKQMIKGG---IRPD--LKSYSVLVDCLCMVGRVDDALHYFEELKLN--GLDAD----TISYN 862 (967)
Q Consensus 794 l~~~~~~~~~~~~A~~~~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~ 862 (967)
++..+...|++++|+..++++++.. ..+. ..+++.++.+|...|++++|+.+++++++. ..+.+ ..++.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 3444445555555555555554310 1111 234455555555555555555555555410 00111 13445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC-HHhHHHHHHHHHhcCCHHHH-HHhhcCCC
Q 048794 863 FMINGLGRSGRIEEALSLFDEMKKRG----ISPD-LYTYNSLILNLGRAGMVEEA-RKLAGGNC 920 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~A-~~~~~~~l 920 (967)
.++.+|...|++++|+..++++++.. .... ..++..++.++.+.|++++| ..++++++
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 55555555555555555555554210 0000 24445555555555555555 44455444
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.86 E-value=1.5e-07 Score=96.05 Aligned_cols=166 Identities=14% Similarity=0.038 Sum_probs=125.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-----hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCC---CCC--HH
Q 048794 720 SHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTP-----CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGC---KPN--CV 789 (967)
Q Consensus 720 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~ 789 (967)
.+...+..+...|++++|.+.+.+.+........ ..+..++..+...|++++|+..++++++... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445666777888888888888887775322111 2344567778889999999999999986421 112 34
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKG-GIRPD-----LKSYSVLVDCLCMVGRVDDALHYFEELKLN----GLDA-DT 858 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~ 858 (967)
+++.++.+|...|++++|+..|+++++. ...|+ ..+++.++.+|...|++++|+.+++++++. +... ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 8899999999999999999999998831 01222 258899999999999999999999998752 1111 25
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 048794 859 ISYNFMINGLGRSGRIEEA-LSLFDEMK 885 (967)
Q Consensus 859 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 885 (967)
.++..++.+|...|++++| ...++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6788999999999999999 77788876
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.85 E-value=3.9e-08 Score=87.37 Aligned_cols=102 Identities=14% Similarity=-0.024 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048794 788 CVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMIN 866 (967)
Q Consensus 788 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 866 (967)
...+..++..+.+.|++++|+..|++++. ..|+ ...|..++.+|...|++++|+..|+++++.+ +.++..+..++.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 34677777777788888888888888777 3554 5677778888888888888888888877643 335667777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 048794 867 GLGRSGRIEEALSLFDEMKKRGISPDLY 894 (967)
Q Consensus 867 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 894 (967)
+|...|++++|+..|+++++ +.|++.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 88888888888888888775 345553
No 136
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.85 E-value=8.8e-07 Score=89.38 Aligned_cols=235 Identities=10% Similarity=0.042 Sum_probs=174.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccC-ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-C-CH
Q 048794 658 LLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSG-RVEELLKLYEEMSFRGCKPNTISHNIVISGLVKS-N-SI 734 (967)
Q Consensus 658 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~ 734 (967)
..+.+..++|++++..++..++ .+..+|+....++...| .+++++.++..++..+ +.+..+|+.-..++... + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 3455566789999999998763 36778888888888888 5999999999999886 45778888888888776 7 88
Q ss_pred HHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---
Q 048794 735 DKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLE--------EAKKLFEEMLDYGCKPNCVIYNILINGFGKTGD--- 803 (967)
Q Consensus 735 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 803 (967)
++++..++++++.+ +.+-.+|.....++.+.|.++ ++++.++++++..+ -|..+|+....++.+.+.
T Consensus 142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcccccc
Confidence 99999999999874 445556766666666666666 89999999998753 377899999888887776
Q ss_pred ----HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHCC-----
Q 048794 804 ----VETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRV--------------------DDALHYFEELKLNG----- 853 (967)
Q Consensus 804 ----~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~----- 853 (967)
++++++.+++++.. .|+ ..+|+.+..++.+.|+. .+.......+....
T Consensus 220 ~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred chHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 78999999999984 565 68888888888877764 22222222222211
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHH
Q 048794 854 LDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD-LYTYNSL 899 (967)
Q Consensus 854 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l 899 (967)
..+++.++..|+++|.+.|+.++|.++++.+.+. ..|- ...|.-.
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~yw~~~ 343 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGYWEFR 343 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHHHHHH
Confidence 0246778888999999999999999999998754 3333 3444433
No 137
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.84 E-value=6.9e-09 Score=90.05 Aligned_cols=114 Identities=16% Similarity=0.230 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048794 788 CVIYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMIN 866 (967)
Q Consensus 788 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 866 (967)
...+..++..+...|++++|+..|+++++. .| +..++..++.++...|++++|..+++++++.. +.+...+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 345555666666666666666666666553 23 34555566666666666666666666665532 334455555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 048794 867 GLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGR 905 (967)
Q Consensus 867 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 905 (967)
++...|++++|...++++.+. .+.+...+..++.++..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALEL-DPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHh
Confidence 666666666666666666543 23334555555554443
No 138
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.83 E-value=4e-06 Score=91.40 Aligned_cols=386 Identities=9% Similarity=-0.014 Sum_probs=196.9
Q ss_pred HHHHHHccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc-HHHHHHHHHHHHHc-C
Q 048794 5 FDLMQKQIINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGF-CREALAVYKRVVSE-G 82 (967)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~-~ 82 (967)
|++.+...+......|...+..+-. |+++.+..+|++.... .|++.+|...+....+.+. .+....+|+..+.. |
T Consensus 3 ~e~~~~~~i~~aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg 79 (493)
T 2uy1_A 3 AEEKMGVELSSPSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFE 79 (493)
T ss_dssp ---------CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHST
T ss_pred hHHHcCcchHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcC
Confidence 3434433466666677766666655 7788888888888874 3577888877777766663 34566677776653 3
Q ss_pred C-CCCHhhHHHHHHHHH----ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 048794 83 I-KPSLKTYSALMVAAG----KRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDV 157 (967)
Q Consensus 83 ~-~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 157 (967)
. ..+...|...+..+. ..++.+.++.+|+.+.......-...|......-. ..+...+..++.+..
T Consensus 80 ~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~-~~~~~~~~~~~~~~~-------- 150 (493)
T 2uy1_A 80 NYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFEL-ELNKITGKKIVGDTL-------- 150 (493)
T ss_dssp TCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH-HHCHHHHHHHHHHHH--------
T ss_pred CCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHH-HhccccHHHHHHHHh--------
Confidence 2 235566666665443 24567778888888776321111122222222111 111222222221111
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC-------CHHHHHHHHHHHHhCCCCCcHhHH
Q 048794 158 VTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCG-------NIEVVKEFWSQMVADGYAADVVTY 230 (967)
Q Consensus 158 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~ 230 (967)
+.+..|..+++.+...-...+...|...+..-...+ ..+.+..++++++... +.++..|
T Consensus 151 -------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW 216 (493)
T 2uy1_A 151 -------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVY 216 (493)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHH
Confidence 112222222322221000011223333332221110 0234555666665542 3356666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CCCC---CHHHHHH
Q 048794 231 TIFVDALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEIL-----GVQP---TAYTYIL 302 (967)
Q Consensus 231 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~---~~~~~~~ 302 (967)
...+..+.+.|+++.|..++++.... +.+...|.... .+...++. ...+.+..... +..+ ....+..
T Consensus 217 ~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~-~~~e~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~ 291 (493)
T 2uy1_A 217 FFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYG-LVMDEEAV--YGDLKRKYSMGEAESAEKVFSKELDLLRIN 291 (493)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHH-HHTTCTHH--HHHHHHHTC----------CHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHH-hhcchhHH--HHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence 66666666777777777777776665 22322222111 11111110 11111110000 0001 1234555
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCCCCCcccHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 048794 303 FIDYYGKSADPGKALETFEKMKIRGIVPNVVSCNASLYSLAE-TGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVG 381 (967)
Q Consensus 303 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (967)
.+....+.++.+.|..+|+++ .. ...+...|......-.. .++.+.|..+|+...+.- +.+...+...+......|
T Consensus 292 y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~ 368 (493)
T 2uy1_A 292 HLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIG 368 (493)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcC
Confidence 555555677888999999888 32 11222333322222222 336889999998887652 334445555666667788
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 382 QVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMK 429 (967)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 429 (967)
+.+.|+.+++.+. .....|...+..-...|+.+.+..++++..
T Consensus 369 ~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 369 DEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp CHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998872 245677777777778899998888888765
No 139
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.83 E-value=7.5e-09 Score=89.91 Aligned_cols=97 Identities=9% Similarity=-0.030 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLG 904 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 904 (967)
.+..++..+...|++++|+..|+++++.+ +.+...+..++.++...|++++|+..++++++. .|.+...+..++.++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHH
Confidence 34444444444444444444444444422 223444444444444444444444444444432 1222344444444444
Q ss_pred hcCCHHHHHHhhcCCCcCC
Q 048794 905 RAGMVEEARKLAGGNCFVQ 923 (967)
Q Consensus 905 ~~g~~~~A~~~~~~~l~~~ 923 (967)
..|++++|+..++++++++
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 4455555555555444444
No 140
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.83 E-value=1.2e-08 Score=87.34 Aligned_cols=102 Identities=9% Similarity=-0.049 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLG 904 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 904 (967)
.+..++..+.+.|++++|+..++++++.+ +.+...+..++.++...|++++|+..++++++. -|.+...+..++.++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML-DPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 45677788888888888888888888753 446777888888888888888888888888864 3445578888888888
Q ss_pred hcCCHHHHHHhhcCCCcCCCCccc
Q 048794 905 RAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 905 ~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
..|++++|+..++++++++|+++.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCCC
Confidence 888888888888888888887653
No 141
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.83 E-value=5.2e-10 Score=106.63 Aligned_cols=86 Identities=10% Similarity=0.033 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeecc
Q 048794 860 SYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAE 938 (967)
Q Consensus 860 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~ 938 (967)
++..++.+|...|++++|+..++++++. .+.+..++..++.++...|++++|+..++++++++|+++.+ ..++.++..
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 3444444444444444444444444432 22233444444444444444555554444444444444444 344444444
Q ss_pred CCCccccc
Q 048794 939 NPRATSLS 946 (967)
Q Consensus 939 ~g~~~~~~ 946 (967)
.|+.+++.
T Consensus 169 ~~~~~~~~ 176 (198)
T 2fbn_A 169 LKEARKKD 176 (198)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 44444433
No 142
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.82 E-value=1.8e-07 Score=94.46 Aligned_cols=134 Identities=11% Similarity=0.106 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-C-CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHH-----
Q 048794 769 LEEAKKLFEEMLDYGCKPNCVIYNILINGFGKT-G-DVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVD----- 840 (967)
Q Consensus 769 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~----- 840 (967)
+++++..++.++... +.+..+|+.-..++... + ++++++++++++++. .| +..+|.....++.+.|.++
T Consensus 105 l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~ 181 (349)
T 3q7a_A 105 LEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEA 181 (349)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchh
Confidence 455555555554432 12334444444444333 3 445555555555542 23 2344444444444444444
Q ss_pred ---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 048794 841 ---DALHYFEELKLNGLDADTISYNFMINGLGRSGR-------IEEALSLFDEMKKRGISPDLYTYNSLILNLGRAG 907 (967)
Q Consensus 841 ---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 907 (967)
+++++++++++.+ +.+..+|+..+.++.+.|+ ++++++.+++++.. .+.|...|..+..++.+.|
T Consensus 182 ~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~-~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 182 QWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL-IPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 5555555555432 2244445555555544443 45555555555542 2333344444444444433
No 143
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.80 E-value=4.9e-08 Score=84.41 Aligned_cols=105 Identities=16% Similarity=0.135 Sum_probs=61.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNG--LDAD----TISYN 862 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~ 862 (967)
.+..++..+.+.|++++|+..|+++++ +.|+ ..++..++.+|...|++++|+..++++++.+ ..++ ..++.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 455666666666666666666666666 3444 4566666666666666666666666665421 0111 23455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 048794 863 FMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNS 898 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 898 (967)
.++.++...|++++|++.|+++++ ..|++.....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~ 121 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKK 121 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHH
Confidence 566666666666666666666664 3455554433
No 144
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.79 E-value=1e-08 Score=88.81 Aligned_cols=103 Identities=8% Similarity=-0.058 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHhHH
Q 048794 824 KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRG--ISPD----LYTYN 897 (967)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~ 897 (967)
.++..+|..+.+.|++++|+..|+++++.+ +.+..+|..++.+|...|++++|++.++++++.. ..++ ..++.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 567889999999999999999999999854 4467889999999999999999999999998531 1111 24678
Q ss_pred HHHHHHHhcCCHHHHHHhhcCCCcCCCCcc
Q 048794 898 SLILNLGRAGMVEEARKLAGGNCFVQPSEF 927 (967)
Q Consensus 898 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 927 (967)
.++.++...|++++|++.+++++..+|+..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~~ 117 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCHH
Confidence 899999999999999999999999888643
No 145
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.79 E-value=3.2e-09 Score=97.15 Aligned_cols=125 Identities=14% Similarity=0.013 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLN--------G---------LDADTISYNFMINGLGRSGRIEEALSLFDEMKKR 887 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 887 (967)
.+...+..+.+.|++++|+..|++++.. + -+....++..++.+|...|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444555555555555555555555532 0 0112356777888888888888888888888764
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcc-cc-ccceeeeccCCCcccccchhh
Q 048794 888 GISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEF-VS-SELQVIYAENPRATSLSHKHC 950 (967)
Q Consensus 888 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~-~~l~~~~~~~g~~~~~~~~~~ 950 (967)
-|.+..+|..++.++...|++++|+..+++++.++|+++ .. ..|+.+....++..+.+++.+
T Consensus 93 -~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~ 156 (162)
T 3rkv_A 93 -EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTY 156 (162)
T ss_dssp -STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC--
T ss_pred -CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557788888888888888888888888888888887 43 466666666666666555443
No 146
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.79 E-value=9.6e-08 Score=87.76 Aligned_cols=127 Identities=15% Similarity=-0.001 Sum_probs=73.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGL 868 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 868 (967)
.+..++..+...|++++|+..|+++++. .| +..++..++.++...|++++|+..++++++.. +.+..++..++.++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 4555566666666666666666666652 33 34556666666666666666666666666542 33455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHH--HHHHHHHhcCCHHHHHHhhcCCC
Q 048794 869 GRSGRIEEALSLFDEMKKRGISPDLYTYN--SLILNLGRAGMVEEARKLAGGNC 920 (967)
Q Consensus 869 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~l 920 (967)
...|++++|...++++.+. .+.+...+. .++..+...|++++|+..+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV-KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 6666666666666666643 233334442 33333555666666666666543
No 147
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.78 E-value=2.4e-08 Score=91.49 Aligned_cols=96 Identities=10% Similarity=-0.032 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048794 788 CVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMIN 866 (967)
Q Consensus 788 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 866 (967)
...+..++..+...|++++|+..|+++++. .|+ ...+..++.+|...|++++|+..++++++.+ +.+..++..++.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 345666666677777777777777776663 443 5666667777777777777777777766643 334566666777
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 048794 867 GLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 867 ~~~~~g~~~~A~~~~~~~~~ 886 (967)
+|...|++++|...|+++++
T Consensus 88 ~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 77777777777777777664
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.78 E-value=2.1e-08 Score=85.85 Aligned_cols=103 Identities=15% Similarity=0.029 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLG 904 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 904 (967)
.+..++..+...|++++|...+++++... +.+...+..++.++...|++++|...++++.+. .+.+...+..++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-KPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-CcccHHHHHHHHHHHH
Confidence 44455555555555555555555555432 224445555555555555555555555555543 2233455555555555
Q ss_pred hcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 905 RAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 905 ~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
..|++++|...++++++.+|+++..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~ 108 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQL 108 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHH
Confidence 5555555555555555555555543
No 149
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.78 E-value=2.7e-08 Score=95.21 Aligned_cols=155 Identities=12% Similarity=0.004 Sum_probs=76.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCH
Q 048794 730 KSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY----GCKP-NCVIYNILINGFGKTGDV 804 (967)
Q Consensus 730 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~ 804 (967)
..|++++|...++.+.. .+.....++..++..+...|++++|+..++++.+. +..+ ...++..++.++...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45666666664333322 12233445555666666666666666666665541 1011 122455556666666666
Q ss_pred HHHHHHHHHHHhC----CCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCC--HHHHHHHHHHHHhcCC
Q 048794 805 ETACELFKQMIKG----GIRP-D-LKSYSVLVDCLCMVGRVDDALHYFEELKLN---GLDAD--TISYNFMINGLGRSGR 873 (967)
Q Consensus 805 ~~A~~~~~~~~~~----~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~ 873 (967)
++|+..+++.++. +..| . ..++..++.++...|++++|...+++++.. .-.+. ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666665441 1011 1 234555566666666666666666655421 00111 1234455666666666
Q ss_pred HHHHHHHHHHHH
Q 048794 874 IEEALSLFDEMK 885 (967)
Q Consensus 874 ~~~A~~~~~~~~ 885 (967)
+++|.+.++++.
T Consensus 163 ~~~A~~~~~~al 174 (203)
T 3gw4_A 163 LLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666555
No 150
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.78 E-value=1.2e-08 Score=88.90 Aligned_cols=105 Identities=15% Similarity=-0.013 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLNGLDA------D-----TISYNFMINGLGRSGRIEEALSLFDEMKKR-----G 888 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~ 888 (967)
.+...+..+...|++++|+..|+++++..... + ..+|..++.++...|++++|+..++++++. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 45566677777777777777777777532110 1 237888888889999999999999988862 1
Q ss_pred CCCCH-HhH----HHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 889 ISPDL-YTY----NSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 889 ~~~~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
+.|+. ..| ...+.++...|++++|+..|+++++++|++...
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 16665 788 899999999999999999999999999999885
No 151
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.78 E-value=3.2e-08 Score=88.35 Aligned_cols=107 Identities=15% Similarity=0.050 Sum_probs=81.0
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 775 LFEEMLDYGCKP-NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 775 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
.|++++.. .| +...+..++..+...|++++|+..|++++.. .|+ ...+..++.++...|++++|+..|++++..
T Consensus 9 ~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45555553 23 3446777888888888888888888888773 554 677888888888888888888888888875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 853 GLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 853 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
+ +.++.++..++.+|...|++++|...|+++++
T Consensus 85 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 85 D-IXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp S-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 34667778888888888888888888888875
No 152
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.77 E-value=1.6e-08 Score=102.06 Aligned_cols=196 Identities=7% Similarity=-0.053 Sum_probs=123.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048794 717 NTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILIN 796 (967)
Q Consensus 717 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 796 (967)
+...+..++..+...|++++|+..|++++... +.+...+..++.+|.+.|++++|+..++++++.. +.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455666666777777777777777777653 3355677778888888888888888888888753 235668888888
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048794 797 GFGKTGDVETACELFKQMIKGGIRPDL-KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIE 875 (967)
Q Consensus 797 ~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 875 (967)
+|...|++++|+..|+++++. .|+. ..+...+....+ ..++..+.. ......+.+......++..+ .|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALR---IAKKKRWNS-IEERRIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHH---HHHHHHHHH-HHHTCCCCCCHHHHHHHHHH--HHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHH---HHHHHHHHH-HHHHHHhhhHHHHHHHHHHH--HHHHH
Confidence 888888888888888888762 3321 011111111111 111222222 22233455555555565543 68889
Q ss_pred HHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhc-CCHHHHHHhhcCCCcCCC
Q 048794 876 EALSLFDEMKKRGISPDL-YTYNSLILNLGRA-GMVEEARKLAGGNCFVQP 924 (967)
Q Consensus 876 ~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~p 924 (967)
+|++.++++++ ..|+. .....+...+... +.+++|..++.++.+..+
T Consensus 153 ~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~ 201 (281)
T 2c2l_A 153 RELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201 (281)
T ss_dssp HHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred HHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 99999888875 45554 4455666666665 678899999987776433
No 153
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.77 E-value=1.1e-07 Score=83.49 Aligned_cols=116 Identities=17% Similarity=0.081 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048794 788 CVIYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMIN 866 (967)
Q Consensus 788 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 866 (967)
...|..++..+...|++++|+..|+++++. .| +..++..++.++...|++++|+..++++++.. +.+..++..++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 335566666666666666666666666653 33 34556666666666666666666666666532 334555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 048794 867 GLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAG 907 (967)
Q Consensus 867 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 907 (967)
++...|++++|...++++.+. .+.+...+..++.++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL-DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhc
Confidence 666666666666666666542 2222355555555555544
No 154
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.75 E-value=2.3e-08 Score=103.82 Aligned_cols=151 Identities=13% Similarity=-0.011 Sum_probs=119.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHH
Q 048794 732 NSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPN--------------CVIYNILING 797 (967)
Q Consensus 732 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~ 797 (967)
+++++|+..++...... +.....+..++..|.+.|++++|+..|+++++..+... ..+|..++.+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34444544444333221 22456788899999999999999999999998643321 4789999999
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048794 798 FGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEE 876 (967)
Q Consensus 798 ~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 876 (967)
|.+.|++++|+..|+++++. .|+ ..+++.++.+|...|++++|+..|+++++.. +.+..++..++.++...|++++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999984 565 7889999999999999999999999999853 4467788999999999999999
Q ss_pred H-HHHHHHHHH
Q 048794 877 A-LSLFDEMKK 886 (967)
Q Consensus 877 A-~~~~~~~~~ 886 (967)
| ...|+++..
T Consensus 283 a~~~~~~~~~~ 293 (336)
T 1p5q_A 283 REKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 8 456776653
No 155
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.75 E-value=1.9e-07 Score=85.77 Aligned_cols=128 Identities=15% Similarity=0.102 Sum_probs=104.4
Q ss_pred hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 048794 754 CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDC 832 (967)
Q Consensus 754 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 832 (967)
..+..++..+...|++++|+..|+++++.. +.+..++..++.++...|++++|+..++++++. .|+ ..++..++.+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 356778888899999999999999998864 336778999999999999999999999999884 454 6788999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 048794 833 LCMVGRVDDALHYFEELKLNGLDADTISYNF--MINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 833 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
+...|++++|...++++++.. +.+...+.. ++..+...|++++|+..+.+..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999998753 335555533 4444788899999999988765
No 156
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.74 E-value=1.5e-07 Score=82.22 Aligned_cols=118 Identities=13% Similarity=0.049 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 048794 823 LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILN 902 (967)
Q Consensus 823 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 902 (967)
...+..++..+...|++++|...+++++... +.+...+..++.++...|++++|...++++.+. .+.+...+..++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI-DPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-CccCHHHHHHHHHH
Confidence 3456666666777777777777777766542 335556666777777777777777777776653 33345666667777
Q ss_pred HHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCCc
Q 048794 903 LGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPRA 942 (967)
Q Consensus 903 ~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~~ 942 (967)
+...|++++|+..++++++++|+++.+ ..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 777777777777777777777766665 5666666666654
No 157
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.74 E-value=6e-08 Score=90.26 Aligned_cols=126 Identities=9% Similarity=0.059 Sum_probs=75.3
Q ss_pred hccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--
Q 048794 799 GKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMING-LGRSGRI-- 874 (967)
Q Consensus 799 ~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 874 (967)
...|++++|+..+++.++. .| +...+..++.+|...|++++|...|+++++.+ +.+...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 3456666666666666653 33 34566666666666666666666666666532 3345556666666 5566666
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 875 EEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 875 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
++|...++++++. .+.+...+..++.++...|++++|+..++++++++|+++.
T Consensus 98 ~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 98 AQTRAMIDKALAL-DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 6666666666653 2334466666666666666666666666666666666654
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.73 E-value=1.5e-08 Score=96.45 Aligned_cols=153 Identities=12% Similarity=-0.010 Sum_probs=98.4
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-----------------HHH
Q 048794 763 LSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-----------------LKS 825 (967)
Q Consensus 763 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-----------------~~~ 825 (967)
....|+++.+.+.++...+.. ......+..++..+...|++++|+..|+++++. .|+ ..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp --------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHHHHHHH
Confidence 344455555555554333210 112345667777777788888888888887763 222 267
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 048794 826 YSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGR 905 (967)
Q Consensus 826 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 905 (967)
+..++.++...|++++|+..++++++.. +.+..++..++.+|...|++++|...++++++. .|.+..++..++.++..
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL-NPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHH
Confidence 7888888888899999999998888753 446778888888888999999999999888864 34456788888888888
Q ss_pred cCCHHHHH-HhhcCCC
Q 048794 906 AGMVEEAR-KLAGGNC 920 (967)
Q Consensus 906 ~g~~~~A~-~~~~~~l 920 (967)
.|+.+++. ..+.+.+
T Consensus 169 ~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHC----------
T ss_pred HHHHHHHHHHHHHHHh
Confidence 88877777 4444444
No 159
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.73 E-value=4.1e-08 Score=83.04 Aligned_cols=103 Identities=14% Similarity=0.069 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHhHHHHH
Q 048794 823 LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISP--DLYTYNSLI 900 (967)
Q Consensus 823 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 900 (967)
...+..++.++...|++++|...++++++.. +.+...+..++.++...|++++|...++++++. .+. +..++..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV-IEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-SCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccchHHHHHHHH
Confidence 3456677777777777777777777777643 345666777777777788888888888777763 333 457777777
Q ss_pred HHHHhc-CCHHHHHHhhcCCCcCCCCcc
Q 048794 901 LNLGRA-GMVEEARKLAGGNCFVQPSEF 927 (967)
Q Consensus 901 ~~~~~~-g~~~~A~~~~~~~l~~~p~~~ 927 (967)
.++... |++++|++.+++++...|+++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 788888 888888888888887777764
No 160
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.73 E-value=1.5e-07 Score=81.61 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048794 789 VIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMING 867 (967)
Q Consensus 789 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 867 (967)
..|..++..+...|++++|+..|+++++. .|+ ...+..++.++...|++++|+..++++++.+ +.+..++..++.+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 35666677777777777777777777763 443 5677777777777777777777777777643 3356667777777
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 048794 868 LGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 868 ~~~~g~~~~A~~~~~~~~~ 886 (967)
+...|++++|...++++++
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 7777777777777777765
No 161
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.72 E-value=3.1e-07 Score=79.32 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048794 824 KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNL 903 (967)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 903 (967)
..+..++.++...|++++|..+++++++.. +.+...+..++.++...|++++|...++++.+. .+.+...+..++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHH
Confidence 344555555555555555555555555432 223444555555555555555555555555542 233344555555555
Q ss_pred HhcCCHHHHHHhhcCCCcCCCCcccc-ccceeee
Q 048794 904 GRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIY 936 (967)
Q Consensus 904 ~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~ 936 (967)
...|++++|..++++++..+|+++.. ..++.++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 55555555555555555555555544 3444443
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=5.6e-08 Score=87.28 Aligned_cols=96 Identities=15% Similarity=0.064 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048794 788 CVIYNILINGFGKTGDVETACELFKQMIKGGIRPD----LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNF 863 (967)
Q Consensus 788 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 863 (967)
...+..++..+...|++++|+..|+++++ ..|+ ...+..++.++...|++++|+..++++++.. +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 34555555555555555555555555555 2344 3444555555555555555555555555432 223444455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 048794 864 MINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 864 l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
++.++...|++++|...++++++
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555554
No 163
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.68 E-value=7.1e-07 Score=89.74 Aligned_cols=193 Identities=8% Similarity=0.056 Sum_probs=152.4
Q ss_pred hcCCH-HHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048794 730 KSNSI-DKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGR----------LEEAKKLFEEMLDYGCKPNCVIYNILINGF 798 (967)
Q Consensus 730 ~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 798 (967)
..|.+ ++|+..+..++..+ |....+++....++...|. +++++.+++.++... +.+..+|+.-..++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34444 57999999999874 3333455555555444443 688999999999864 34788999988888
Q ss_pred hccC--CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---
Q 048794 799 GKTG--DVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGR-VDDALHYFEELKLNGLDADTISYNFMINGLGRS--- 871 (967)
Q Consensus 799 ~~~~--~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 871 (967)
...+ .+++++++++++++. .| |..+|+....++...|. +++++++++++++.+ +.+..+|+..+.++...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred hccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 8777 489999999999994 55 57899999999999998 699999999999864 44777888888887765
Q ss_pred -----------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-----------CCHHHHHHhhcCCCcCCCCcccc
Q 048794 872 -----------GRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRA-----------GMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 872 -----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
+.++++++.+.+++.. .|.|..+|..+-.++.+. +.++++++.++++++++|++ .|
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~-~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w 273 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFT-DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KW 273 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HH
T ss_pred cccccccccchHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-ch
Confidence 5689999999999975 455668888777777766 46899999999999999998 45
No 164
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.68 E-value=1.3e-07 Score=104.83 Aligned_cols=171 Identities=9% Similarity=0.081 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 048794 769 LEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGD----------VETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVG 837 (967)
Q Consensus 769 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 837 (967)
.++|++.+++++..++ .+..+|+.-..++...|+ ++++++.++++++. .|. ..+|++.++++.+.|
T Consensus 45 ~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 4678999999998642 256688888877777776 89999999999984 565 689999999999999
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc--------
Q 048794 838 --RVDDALHYFEELKLNGLDADTISYNFMINGLGRSG-RIEEALSLFDEMKKRGISPDLYTYNSLILNLGRA-------- 906 (967)
Q Consensus 838 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 906 (967)
+++++++.++++++.+ +-+..+|+..+.++.+.| .++++++.++++++. .+.+..+|...+.++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-NFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT-TCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH-CCCCccHHHHHHHHHHhhcccccccc
Confidence 6799999999999864 447888999999999999 899999999999864 344668898888887774
Q ss_pred ------CCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCCccc
Q 048794 907 ------GMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPRATS 944 (967)
Q Consensus 907 ------g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~~~~ 944 (967)
+.+++|++++++++.++|+|..+ +++++++...|++++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 66899999999999999999987 799999999998776
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.68 E-value=6.5e-08 Score=85.46 Aligned_cols=96 Identities=11% Similarity=-0.001 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048794 787 NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMI 865 (967)
Q Consensus 787 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 865 (967)
+...+..++..+...|++++|+..|++++.. .|+ ...+..++.++...|++++|...++++++.+ +.+...+..++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 3445555555555555666666666555552 333 4455555555555555555555555555432 22444555555
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 048794 866 NGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 866 ~~~~~~g~~~~A~~~~~~~~ 885 (967)
.++...|++++|...+++++
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 55555555555555555555
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.67 E-value=2.3e-08 Score=109.02 Aligned_cols=135 Identities=14% Similarity=-0.011 Sum_probs=107.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048794 791 YNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLG 869 (967)
Q Consensus 791 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 869 (967)
+..++..+.+.|++++|++.|+++++. .|+ ..++..++.+|.+.|++++|+..++++++.+ +.+..++..++.+|.
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 85 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 344556677889999999999999884 565 6888999999999999999999999999864 446788899999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH--HHhcCCHHHHHHhhc-----------CCCcCCCCcccc
Q 048794 870 RSGRIEEALSLFDEMKKRGISPDLYTYNSLILN--LGRAGMVEEARKLAG-----------GNCFVQPSEFVS 929 (967)
Q Consensus 870 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~-----------~~l~~~p~~~~~ 929 (967)
..|++++|.+.++++++. .+.+...+..++.+ +.+.|++++|++.++ +++.++|+....
T Consensus 86 ~~g~~~eA~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~ 157 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKV-KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGP 157 (477)
T ss_dssp HHTCHHHHHHHHHHHHHH-STTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSC
T ss_pred HcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccc
Confidence 999999999999999874 33345677777766 888899999999999 999999987665
No 167
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.67 E-value=4.1e-08 Score=101.92 Aligned_cols=132 Identities=14% Similarity=0.094 Sum_probs=46.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 791 YNILINGFGKTGDVETACELFKQMIKGGIRPDLK------------------SYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 791 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
+..++..+.+.|++++|+..|++++. ..|+.. ++..++.+|.+.|++++|+..++++++.
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444455555555555555555544 233322 4445555555555555555555555543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHH-hcCCHHHHHHhhcCCCcCCCCcc
Q 048794 853 GLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD-LYTYNSLILNLG-RAGMVEEARKLAGGNCFVQPSEF 927 (967)
Q Consensus 853 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~-~~g~~~~A~~~~~~~l~~~p~~~ 927 (967)
+ +.+..++..++.+|...|++++|...|+++++ +.|+ ..++..+..+.. ..+..+++.+.+++++..+|+++
T Consensus 260 ~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 260 E-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 2 22444555555555555555555555555543 2222 234444444322 23444555555555555555544
No 168
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.67 E-value=1.5e-07 Score=89.95 Aligned_cols=158 Identities=12% Similarity=-0.011 Sum_probs=85.5
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCH
Q 048794 765 KSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIK----GGIRPD-LKSYSVLVDCLCMVGRV 839 (967)
Q Consensus 765 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~ 839 (967)
..|++++|.+.++.+... +.....++..++.++...|++++|+..+++++. .+..|. ..++..++.++...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644444331 112334666666666666666666666666654 111222 34556666666666666
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC----HHhHHHHHHHHHhcCC
Q 048794 840 DDALHYFEELKLN----GLDA--DTISYNFMINGLGRSGRIEEALSLFDEMKKRG-ISPD----LYTYNSLILNLGRAGM 908 (967)
Q Consensus 840 ~~A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~ 908 (967)
++|...++++++. +-.+ ...++..++.++...|++++|...++++.+.. -.++ ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666666531 1011 12345566666666666666666666655210 0111 1334566666666666
Q ss_pred HHHHHHhhcCCCcCC
Q 048794 909 VEEARKLAGGNCFVQ 923 (967)
Q Consensus 909 ~~~A~~~~~~~l~~~ 923 (967)
+++|...+++++++.
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666553
No 169
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.64 E-value=2.6e-07 Score=81.99 Aligned_cols=95 Identities=15% Similarity=0.034 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048794 789 VIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMING 867 (967)
Q Consensus 789 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 867 (967)
..+..++..+...|++++|+..|++++.. .|+ ...+..++.++...|++++|+..|++++..+ +.++..+..++.+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 35666677777777777777777777763 453 5667777777777777777777777777643 3355667777777
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 048794 868 LGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 868 ~~~~g~~~~A~~~~~~~~~ 886 (967)
|...|++++|...++++++
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777764
No 170
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.63 E-value=8.1e-09 Score=88.14 Aligned_cols=85 Identities=18% Similarity=0.143 Sum_probs=43.3
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048794 801 TGDVETACELFKQMIKGGI-RPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEAL 878 (967)
Q Consensus 801 ~~~~~~A~~~~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 878 (967)
.|++++|+..|+++++.+. .|+ ..++..++.+|...|++++|+..++++++.+ +.+..++..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 3555566666666555210 132 3455555555555566666666666555532 224455555555555556666666
Q ss_pred HHHHHHHH
Q 048794 879 SLFDEMKK 886 (967)
Q Consensus 879 ~~~~~~~~ 886 (967)
..++++++
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
No 171
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.63 E-value=2.6e-08 Score=108.28 Aligned_cols=144 Identities=13% Similarity=0.054 Sum_probs=108.3
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC----------------HHHHHH
Q 048794 765 KSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD----------------LKSYSV 828 (967)
Q Consensus 765 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----------------~~~~~~ 828 (967)
..+++++|+..|+...+.. +.....|..++..+.+.|++++|+..|+++++. .|+ ..++..
T Consensus 246 ~l~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~n 322 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLN 322 (457)
T ss_dssp EEEEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHH
Confidence 3345566666665554421 113457888899999999999999999998873 343 467888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcC
Q 048794 829 LVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD-LYTYNSLILNLGRAG 907 (967)
Q Consensus 829 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 907 (967)
++.+|.+.|++++|+..++++++.+ +.+..++..++.+|...|++++|+..|+++++ +.|+ ..++..++.++.+.|
T Consensus 323 la~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 323 LAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAK 399 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHH
Confidence 8889999999999999999988754 44677888888999999999999999998886 4444 477888888888888
Q ss_pred CHHHHHH
Q 048794 908 MVEEARK 914 (967)
Q Consensus 908 ~~~~A~~ 914 (967)
++++|.+
T Consensus 400 ~~~~a~~ 406 (457)
T 1kt0_A 400 EHNERDR 406 (457)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887764
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.63 E-value=1.1e-07 Score=82.80 Aligned_cols=91 Identities=14% Similarity=0.077 Sum_probs=44.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 048794 793 ILINGFGKTGDVETACELFKQMIKGGIRPD-L---KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDAD---TISYNFMI 865 (967)
Q Consensus 793 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 865 (967)
.++..+...|++++|+..|+++++. .|+ . .++..++.++...|++++|...++++++.. +.+ +.++..++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 3444455555555555555555542 222 1 344455555555555555555555555421 112 34444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 048794 866 NGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 866 ~~~~~~g~~~~A~~~~~~~~~ 886 (967)
.++...|++++|...++++++
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555543
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.61 E-value=7.7e-09 Score=112.82 Aligned_cols=124 Identities=10% Similarity=-0.038 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLG 904 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 904 (967)
.+..++..+...|++++|++.|+++++.. +.+..++..++.+|.+.|++++|+..++++++. .+.+...+..++.++.
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-DKKYIKGYYRRAASNM 85 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 34556777888999999999999999853 446889999999999999999999999999975 3445689999999999
Q ss_pred hcCCHHHHHHhhcCCCcCCCCcccc-ccceee--eccCCCcccccchhh
Q 048794 905 RAGMVEEARKLAGGNCFVQPSEFVS-SELQVI--YAENPRATSLSHKHC 950 (967)
Q Consensus 905 ~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~--~~~~g~~~~~~~~~~ 950 (967)
..|++++|++.++++++++|+++.+ ..++.+ +...|++++|...+.
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999988 678777 889999999988555
No 174
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.61 E-value=1.6e-08 Score=106.06 Aligned_cols=126 Identities=13% Similarity=0.077 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhC--------------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 788 CVIYNILINGFGKTGDVETACELFKQMIKG--------------GIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 788 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
...+..++..+.+.|++++|+..|+++++. ...|. ..++..++.+|.+.|++++|+..++++++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 346777888888888888888888888761 01222 345566666666666666666666666654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHh
Q 048794 853 GLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKL 915 (967)
Q Consensus 853 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 915 (967)
+ +.+..++..++.+|...|++++|+..++++++. .+.+..++..++.++...++++++.+.
T Consensus 303 ~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l-~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 D-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-APEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred C-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 234556666666666666666666666666653 233445556666666666666655543
No 175
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.61 E-value=1.1e-06 Score=74.77 Aligned_cols=109 Identities=17% Similarity=0.029 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048794 789 VIYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMING 867 (967)
Q Consensus 789 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 867 (967)
..+..++..+...|++++|+..|++++.. .| +...+..++.++...|++++|...++++++.. +.+...+..++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 45556666666666777777777766653 33 35566666666666777777777777666542 3345566666777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 048794 868 LGRSGRIEEALSLFDEMKKRGISPDLYTYNSLIL 901 (967)
Q Consensus 868 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 901 (967)
+...|++++|.+.++++.+. .+.+...+..++.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~ 114 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH-EANNPQLKEGLQN 114 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT-CTTCHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHc-CCCCHHHHHHHHH
Confidence 77777777777777776643 2223344444443
No 176
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=1.3e-06 Score=78.15 Aligned_cols=104 Identities=13% Similarity=0.000 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 048794 823 LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDAD----TISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNS 898 (967)
Q Consensus 823 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 898 (967)
...+..++..+...|++++|...|+++++. .|+ ...+..++.+|...|++++|+..++++++. .+.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CccCHHHHHH
Confidence 344455555555555555555555555542 232 344444555555555555555555555432 2223344555
Q ss_pred HHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 899 LILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 899 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
++.++...|++++|+..++++++++|+++.+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 135 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 5555555555555555555555555555443
No 177
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.60 E-value=4.2e-07 Score=100.75 Aligned_cols=204 Identities=9% Similarity=0.006 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--
Q 048794 735 DKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGR----------LEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTG-- 802 (967)
Q Consensus 735 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 802 (967)
++|++.+++++..+ +....+|+....++...|+ ++++++.++++++.. +.+..+|+.-..++.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 44455555555442 2222344444444444444 788999999998865 337778888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---------
Q 048794 803 DVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVG-RVDDALHYFEELKLNGLDADTISYNFMINGLGRS--------- 871 (967)
Q Consensus 803 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 871 (967)
+++++++.++++++. .| +..+|+..+.++.+.| .+++++++++++++.+ +.+..+|...+.++...
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 679999999999984 55 4688999999998888 8999999999998764 44677888888887663
Q ss_pred -----CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH------------HHHhhcCCCcCCCCcc-cc-ccc
Q 048794 872 -----GRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEE------------ARKLAGGNCFVQPSEF-VS-SEL 932 (967)
Q Consensus 872 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~------------A~~~~~~~l~~~p~~~-~~-~~l 932 (967)
+.+++|++.+++++.. .|.+..+|..+.+++.+.|++++ |+..|.+++.++|... .. ..=
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~-~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~~~~~~~~~ 279 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFT-DPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVD 279 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHH-CSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTTBCEEEEES
T ss_pred ccccHHHHHHHHHHHHHHHhh-CCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccccceEEeec
Confidence 5689999999999974 45556999999999999998777 6777999999999874 21 111
Q ss_pred eeeeccCCCccccc
Q 048794 933 QVIYAENPRATSLS 946 (967)
Q Consensus 933 ~~~~~~~g~~~~~~ 946 (967)
+. ...+.|.++.
T Consensus 280 ~~--~~~~~W~~~~ 291 (567)
T 1dce_A 280 EA--PLSVEWRTPD 291 (567)
T ss_dssp SS--EECCCCBCTT
T ss_pred Cc--ccceeeccCC
Confidence 22 4466666543
No 178
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.59 E-value=3.5e-07 Score=83.65 Aligned_cols=103 Identities=10% Similarity=-0.072 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048794 824 KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNL 903 (967)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 903 (967)
..+..++.++...|++++|+..|+++++.+ +.+...+..++.+|...|++++|+..++++++. .+.+...|..++.++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV-DPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 445555555555666666666666555532 224455555555666666666666666655543 223345555556666
Q ss_pred HhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 904 GRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 904 ~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
...|++++|+..++++++++|+++.
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHccCHHHHHHHHHHHHHhCCCchH
Confidence 6666666666666666666665555
No 179
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.59 E-value=5.5e-07 Score=79.33 Aligned_cols=101 Identities=9% Similarity=-0.112 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 048794 823 LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILN 902 (967)
Q Consensus 823 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 902 (967)
...+..++..+...|++++|+..|++++..+ +.+..++..++.++...|++++|...++++++. .+.+...+..++.+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL-DGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CchhHHHHHHHHHH
Confidence 3444555555555555555555555554432 223444555555555555555555555555442 22233445555555
Q ss_pred HHhcCCHHHHHHhhcCCCcCCCC
Q 048794 903 LGRAGMVEEARKLAGGNCFVQPS 925 (967)
Q Consensus 903 ~~~~g~~~~A~~~~~~~l~~~p~ 925 (967)
+...|++++|+..++++++++|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 55555555555555555555554
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.56 E-value=1.1e-07 Score=98.75 Aligned_cols=125 Identities=11% Similarity=0.024 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------------------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 824 KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADT------------------ISYNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
..+..++..+...|++++|+..|++++.. .|+. .++..++.+|.+.|++++|+..+++++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45778899999999999999999999874 3433 278899999999999999999999999
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc-ccceeeeccCCCcccccchhhh
Q 048794 886 KRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS-SELQVIYAENPRATSLSHKHCE 951 (967)
Q Consensus 886 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~l~~~~~~~g~~~~~~~~~~~ 951 (967)
+. .+.+..++..++.++...|++++|+..++++++++|+++.+ ..|+.+........+..++.++
T Consensus 258 ~~-~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 258 TE-EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp HH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------
T ss_pred Hh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 75 34466899999999999999999999999999999999998 6888886555444443333443
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.56 E-value=2.1e-06 Score=93.46 Aligned_cols=24 Identities=8% Similarity=0.037 Sum_probs=16.8
Q ss_pred HHHHHccCChHHHHHHHHHHHhCC
Q 048794 690 LDGYGKSGRVEELLKLYEEMSFRG 713 (967)
Q Consensus 690 ~~~~~~~g~~~~A~~~~~~~~~~~ 713 (967)
+..+.+.|++++|++.|.++.+..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~ 34 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKD 34 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC
Confidence 455666777777777777777653
No 182
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.53 E-value=5e-07 Score=77.15 Aligned_cols=93 Identities=14% Similarity=-0.011 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 048794 756 YGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLC 834 (967)
Q Consensus 756 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 834 (967)
+..++..+.+.|++++|+..|+++++.. +.+...|..++.++...|++++|+..|+++++ ..|+ ..++..++.++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 3344444455555555555555554432 11334444455555555555555555555444 2333 344444555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 048794 835 MVGRVDDALHYFEELKL 851 (967)
Q Consensus 835 ~~g~~~~A~~~~~~~~~ 851 (967)
..|++++|+..++++++
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555554443
No 183
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.53 E-value=6.6e-08 Score=84.53 Aligned_cols=114 Identities=12% Similarity=0.064 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHH
Q 048794 788 CVIYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGL--DAD----TIS 860 (967)
Q Consensus 788 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~ 860 (967)
...+..++..+...|++++|+..|+++++. .| +...+..++.++...|++++|..+++++++... .++ ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 346777888888888888888888888774 34 467778888888888888888888888875321 112 567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 048794 861 YNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGR 905 (967)
Q Consensus 861 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 905 (967)
+..++.++...|++++|.+.++++.+ ..|+...+..+..+...
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHH
Confidence 77788888888888888888888876 34566666666555443
No 184
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.51 E-value=7e-07 Score=77.84 Aligned_cols=111 Identities=16% Similarity=0.184 Sum_probs=66.7
Q ss_pred hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC--CCCC----HHHHH
Q 048794 754 CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGG--IRPD----LKSYS 827 (967)
Q Consensus 754 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~p~----~~~~~ 827 (967)
..+..++..+...|++++|+..|+++.+.. +.+..++..++.++...|++++|+..++++++.. ..++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345566666666777777777777666643 2345566666666666677777777777666521 0111 44566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048794 828 VLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMING 867 (967)
Q Consensus 828 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 867 (967)
.++.++...|++++|...|+++++. .|++.....+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 6666667777777777777766653 3455544444444
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.50 E-value=1.8e-06 Score=75.00 Aligned_cols=101 Identities=14% Similarity=0.006 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHhHHHHH
Q 048794 827 SVLVDCLCMVGRVDDALHYFEELKLNGLDADT---ISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD---LYTYNSLI 900 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 900 (967)
..++..+...|++++|...|+++++.. +.+. .++..++.++...|++++|...++++++. .|.+ ..++..++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-YPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-CCCCcccHHHHHHHH
Confidence 344444555555555555555554421 1111 34444555555555555555555555432 1222 34444555
Q ss_pred HHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 901 LNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 901 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.++...|++++|+..+++++..+|+++..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 55555555555555555555555554443
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.49 E-value=2.3e-07 Score=84.86 Aligned_cols=134 Identities=17% Similarity=0.036 Sum_probs=71.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGI-RPD----LKSYSVLVDCLCMVGRVDDALHYFEELKLN----GLDA-DTI 859 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~ 859 (967)
++..++..+...|++++|+..++++++... .++ ..++..++.++...|++++|..+++++++. +.++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455555555566666666666665554100 011 134555666666666666666666665531 1000 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCC
Q 048794 860 SYNFMINGLGRSGRIEEALSLFDEMKKR----GISPD-LYTYNSLILNLGRAGMVEEARKLAGGNCFVQ 923 (967)
Q Consensus 860 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 923 (967)
++..++.++...|++++|...++++++. +.++. ...+..++.++...|++++|..++++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 4555666666666666666666665521 11111 2345566666666666666666666665443
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.46 E-value=1.3e-06 Score=76.11 Aligned_cols=95 Identities=17% Similarity=0.132 Sum_probs=64.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRPD-------------LKSYSVLVDCLCMVGRVDDALHYFEELKLN---- 852 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 852 (967)
.+...+..+...|++++|+..|+++++ +.|+ ...|.+++.++...|++++|+..++++++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 444555556666666666666666665 2333 226777788888888888888888887763
Q ss_pred -CCCC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 853 -GLDA-DTISY----NFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 853 -~~~~-~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
.+.| +...| ...+.++...|++++|+..|+++++
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0144 44567 7788888888888888888888874
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.46 E-value=9.7e-07 Score=80.43 Aligned_cols=114 Identities=11% Similarity=0.114 Sum_probs=70.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhC--------C--------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKG--------G--------IRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~--------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
.+...+..+.+.|++++|+..|++++.. . ..|. ...+..++.+|.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444444555555555555555554441 0 0233 356777888888888888888888888775
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HhHHHHHHHHHhc
Q 048794 853 GLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL--YTYNSLILNLGRA 906 (967)
Q Consensus 853 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 906 (967)
+ +.+..++..++.+|...|++++|...|+++++. .|+. .+...+..+..+.
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAASVVAREMKIVTERR 145 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHH
Confidence 3 446677788888888888888888888888763 4443 3344444444333
No 189
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.45 E-value=9.5e-07 Score=95.96 Aligned_cols=130 Identities=10% Similarity=-0.008 Sum_probs=100.9
Q ss_pred hhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 048794 753 PCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPN--------------CVIYNILINGFGKTGDVETACELFKQMIKGG 818 (967)
Q Consensus 753 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 818 (967)
...+..++..|.+.|++++|+..|+++++...... ..+|..++.+|.+.|++++|+..|+++++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 45677888889999999999999999987532211 468888999999999999999999999884
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHH
Q 048794 819 IRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSL-FDEMK 885 (967)
Q Consensus 819 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~ 885 (967)
.|+ ..+++.++.+|...|++++|+..|+++++.+ +.+..++..++.++.+.|++++|.+. ++++.
T Consensus 347 -~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 347 -DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 6888999999999999999999999998753 33556788888888888888877643 44443
No 190
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.44 E-value=4.7e-06 Score=90.68 Aligned_cols=202 Identities=7% Similarity=-0.044 Sum_probs=115.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCH----------------hhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC
Q 048794 654 LIHGLLEVHATEMGLDLFTTMKNAGCAPDI----------------STYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPN 717 (967)
Q Consensus 654 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 717 (967)
-+..+.+.|++++|++.|..+++....... .++..++..|...|++++|.+++.++........
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 466778999999999999999987533221 1244556666666666666666655543210000
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 048794 718 TISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDY----GCKPN-CVIYN 792 (967)
Q Consensus 718 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~ 792 (967)
... ....+...+...+...|+++.|+.+++++... +..+. ..++.
T Consensus 90 ~~~------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (434)
T 4b4t_Q 90 KSK------------------------------TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSI 139 (434)
T ss_dssp HHH------------------------------HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHH
T ss_pred chH------------------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 000 00012233344455556666666666665431 11222 23566
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHH
Q 048794 793 ILINGFGKTGDVETACELFKQMIKG----GIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKL----NGLDAD--TISY 861 (967)
Q Consensus 793 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~--~~~~ 861 (967)
.++..|...|++++|+.+++++... +..|. ..++..++.+|...|++++|..+++++.. .+.++. ...+
T Consensus 140 ~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 219 (434)
T 4b4t_Q 140 KLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELD 219 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHH
Confidence 6777777777777777777776542 11222 34566667777777777777777776653 111111 2345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 862 NFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 862 ~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
..++..+...|++++|...+.++.
T Consensus 220 ~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 220 LMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 556666677777777777776665
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.42 E-value=1.9e-06 Score=90.30 Aligned_cols=121 Identities=13% Similarity=0.010 Sum_probs=70.0
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHH----------------CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 048794 755 TYGPLIDGLSKSGRLEEAKKLFEEMLD----------------YGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGG 818 (967)
Q Consensus 755 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 818 (967)
.+..++..+.+.|++++|+..|+++++ .. +.+..+|..++.+|.+.|++++|+..++++++
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-- 301 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALE-- 301 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--
Confidence 355556666666666666666666654 10 11233566666666666666666666666665
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048794 819 IRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALS 879 (967)
Q Consensus 819 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 879 (967)
..|+ ..++..++.+|...|++++|+..|+++++.. +.+...+..++.++...++.+++.+
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2443 4566666666666666666666666666532 2244555556666665555555443
No 192
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.42 E-value=2.2e-06 Score=72.05 Aligned_cols=94 Identities=16% Similarity=0.113 Sum_probs=46.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA--DTISYNFMIN 866 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 866 (967)
.+..++..+...|++++|+..|+++++. .| +...+..++.++...|++++|...++++++.. +. +...+..++.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 3444444555555555555555555442 22 23444555555555555555555555555432 22 3444555555
Q ss_pred HHHhc-CCHHHHHHHHHHHHH
Q 048794 867 GLGRS-GRIEEALSLFDEMKK 886 (967)
Q Consensus 867 ~~~~~-g~~~~A~~~~~~~~~ 886 (967)
++... |++++|.+.++++++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 55555 555555555555543
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.40 E-value=1e-06 Score=80.39 Aligned_cols=133 Identities=17% Similarity=0.140 Sum_probs=98.1
Q ss_pred hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCCC-H
Q 048794 754 CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCK-PN----CVIYNILINGFGKTGDVETACELFKQMIKG----GIRPD-L 823 (967)
Q Consensus 754 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~-~ 823 (967)
.++..++..+...|++++|+..++++.+.... ++ ..++..++.++...|++++|+..++++++. +..+. .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35667777888888888888888877653111 12 136788888899999999999999987752 11111 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 824 KSYSVLVDCLCMVGRVDDALHYFEELKLN----GLDA-DTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
..+..++.++...|++++|...++++++. +.++ ...++..++.++...|++++|.+.++++.+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56778899999999999999999988742 1111 234677889999999999999999998874
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.38 E-value=2.1e-07 Score=78.48 Aligned_cols=88 Identities=13% Similarity=0.047 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCc------ccc-cc
Q 048794 859 ISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSE------FVS-SE 931 (967)
Q Consensus 859 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~-~~ 931 (967)
..+..++..+...|++++|+..++++++. .|.+..++..++.++...|++++|+..++++++++|++ ... ..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34444555555555555555555555542 23334555555555555555555555555555555555 322 34
Q ss_pred ceeeeccCCCcccccc
Q 048794 932 LQVIYAENPRATSLSH 947 (967)
Q Consensus 932 l~~~~~~~g~~~~~~~ 947 (967)
++.++...|+++++..
T Consensus 84 ~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHhHhhhHh
Confidence 5555555555555444
No 195
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.37 E-value=1.6e-07 Score=81.59 Aligned_cols=92 Identities=12% Similarity=-0.082 Sum_probs=60.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 048794 836 VGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGR----------IEEALSLFDEMKKRGISPDLYTYNSLILNLGR 905 (967)
Q Consensus 836 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 905 (967)
.+++++|++.++++++.+ +.+...|..++.++...|+ +++|+..|+++++. .|.+..+|..++.+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-dP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-DPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHH
Confidence 345566666666666542 3355556656666655554 35777777777763 23334777777777776
Q ss_pred c-----------CCHHHHHHhhcCCCcCCCCcccc
Q 048794 906 A-----------GMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 906 ~-----------g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
. |++++|++.|+++++++|++..+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 5 47888888888888888888764
No 196
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.33 E-value=7.6e-07 Score=75.66 Aligned_cols=93 Identities=15% Similarity=0.073 Sum_probs=54.9
Q ss_pred cCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 048794 836 VGRVDDALHYFEELKLNGL--DADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEAR 913 (967)
Q Consensus 836 ~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 913 (967)
.|++++|+..|+++++.+. +.+..++..++.+|...|++++|+..++++++. .|.+..++..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-FPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4566666666666665320 123445666666666666666666666666653 3334566666666666666666666
Q ss_pred HhhcCCCcCCCCcccc
Q 048794 914 KLAGGNCFVQPSEFVS 929 (967)
Q Consensus 914 ~~~~~~l~~~p~~~~~ 929 (967)
..+++++..+|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 6666666666666665
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.31 E-value=1.4e-06 Score=73.15 Aligned_cols=96 Identities=15% Similarity=0.144 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------HH
Q 048794 822 DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD-------LY 894 (967)
Q Consensus 822 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~ 894 (967)
+...+..++.++...|++++|+..|+++++.. +.+...+..++.++...|++++|+..++++++ +.|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHH
Confidence 34567778888888888888888888888753 44677788888888888888888888888885 3444 45
Q ss_pred hHHHHHHHHHhcCCHHHHHHhhcCCC
Q 048794 895 TYNSLILNLGRAGMVEEARKLAGGNC 920 (967)
Q Consensus 895 ~~~~l~~~~~~~g~~~~A~~~~~~~l 920 (967)
.+..++.++...|++++|+..++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 66677777777777777777766554
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.19 E-value=4.3e-05 Score=66.70 Aligned_cols=110 Identities=10% Similarity=0.005 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 048794 768 RLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCM----VGRVDDAL 843 (967)
Q Consensus 768 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 843 (967)
++++|++.|+++.+.| .++.. ++.+|...+..++|+..|++..+. .+..+.+.|+.+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL---NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666654 22222 555555555666666666666653 244566666666665 56666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 048794 844 HYFEELKLNGLDADTISYNFMINGLGR----SGRIEEALSLFDEMKKRG 888 (967)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 888 (967)
++|+++.+.+ ++.+...|+.+|.. .+++++|..+++++.+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666543 44555566666665 566666666666666543
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.15 E-value=5.7e-05 Score=65.90 Aligned_cols=111 Identities=12% Similarity=0.032 Sum_probs=87.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHH
Q 048794 732 NSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGK----TGDVETA 807 (967)
Q Consensus 732 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A 807 (967)
+++++|+.+|+++.+.+. +. .. ++..|...+..++|++.|+++.+.| +...+..++.+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 456778888888877652 22 22 7777777778888999999888853 67788888888877 7889999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 048794 808 CELFKQMIKGGIRPDLKSYSVLVDCLCM----VGRVDDALHYFEELKLNG 853 (967)
Q Consensus 808 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 853 (967)
+..|++..+. .+..+...|+.+|.. .+++++|..+|+++.+.+
T Consensus 81 ~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGL---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 9999998885 356788889988888 788999999999998865
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.15 E-value=9.3e-07 Score=71.03 Aligned_cols=81 Identities=12% Similarity=0.162 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 048794 824 KSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNL 903 (967)
Q Consensus 824 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 903 (967)
..+..++.++...|++++|...++++++.. +.+...+..++.++...|++++|...++++++. .|.+...+..++.++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH
Confidence 455566666666666666666666666532 234555556666666666666666666666543 233345555555555
Q ss_pred Hhc
Q 048794 904 GRA 906 (967)
Q Consensus 904 ~~~ 906 (967)
...
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.10 E-value=1.4e-05 Score=86.07 Aligned_cols=126 Identities=11% Similarity=0.012 Sum_probs=92.3
Q ss_pred HHHHcCCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHh-----CC-CCCC-HHHH
Q 048794 761 DGLSKSGRLEEAKKLFEEMLDY-----GC-KPN-CVIYNILINGFGKTGDVETACELFKQMIK-----GG-IRPD-LKSY 826 (967)
Q Consensus 761 ~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-~~p~-~~~~ 826 (967)
..+..+|++++|+.+++++++. |. .|+ ..+++.|+.+|...|++++|+.+++++++ .| ..|+ ..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456778888888888887652 11 122 23788888889889999999998888775 11 2344 3678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 827 SVLVDCLCMVGRVDDALHYFEELKL-----NGLDA--DTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
++|+.+|..+|++++|..+++++++ .|.+. .......+..++...|.+++|...|.++.+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999988873 33221 344567788888889999999999988874
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.09 E-value=6.6e-06 Score=71.55 Aligned_cols=90 Identities=11% Similarity=0.078 Sum_probs=65.6
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH----------HHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 048794 765 KSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDV----------ETACELFKQMIKGGIRPD-LKSYSVLVDCL 833 (967)
Q Consensus 765 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 833 (967)
+.+.+++|++.++++++.. +.+...|..++.++...+++ ++|+..|+++++ +.|+ ..+|+.++.+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHH
Confidence 4456788888888888764 33677888888888777654 488888888887 5676 57888888888
Q ss_pred HhcC-----------CHHHHHHHHHHHHHCCCCCCHH
Q 048794 834 CMVG-----------RVDDALHYFEELKLNGLDADTI 859 (967)
Q Consensus 834 ~~~g-----------~~~~A~~~~~~~~~~~~~~~~~ 859 (967)
...| ++++|++.|+++++. +|+..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~ 125 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNT 125 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCH
Confidence 7764 677777777777763 45433
No 203
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.07 E-value=1e-05 Score=66.03 Aligned_cols=92 Identities=18% Similarity=0.209 Sum_probs=73.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHH
Q 048794 827 SVLVDCLCMVGRVDDALHYFEELKLNGLDADTI-SYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL-YTYNSLILNLG 904 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 904 (967)
...+..+...|++++|+..++++++.+ +.+.. .+..++.+|...|++++|...++++++. .|+. ..+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~------ 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQAR------ 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHH------
Confidence 346778888999999999999998753 44667 8888999999999999999999999864 3443 44322
Q ss_pred hcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 905 RAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 905 ~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
+.+.+|...++++...+|+++..
T Consensus 75 --~~~~~a~~~~~~~~~~~p~~~~~ 97 (99)
T 2kc7_A 75 --KMVMDILNFYNKDMYNQLEHHHH 97 (99)
T ss_dssp --HHHHHHHHHHCCTTHHHHCCSSC
T ss_pred --HHHHHHHHHHHHHhccCcccccC
Confidence 78899999999999999988753
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.04 E-value=4.5e-06 Score=70.59 Aligned_cols=100 Identities=14% Similarity=0.089 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048794 805 ETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDE 883 (967)
Q Consensus 805 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 883 (967)
++|+..|+++++. .|+ ...+..++.++...|++++|+..++++++.+ +.....+..++.+|...|++++|...+++
T Consensus 2 ~~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3577888888873 454 6778888888888888888888888888753 34566788888888888888888888888
Q ss_pred HHHcCC-CCCHHhHHHHHHHHHhcC
Q 048794 884 MKKRGI-SPDLYTYNSLILNLGRAG 907 (967)
Q Consensus 884 ~~~~~~-~~~~~~~~~l~~~~~~~g 907 (967)
+++..- .++......+...+...|
T Consensus 79 al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 79 GLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHhccccccHHHHHHHHHHHHHhc
Confidence 874210 123344444444444443
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.99 E-value=3e-05 Score=83.47 Aligned_cols=125 Identities=11% Similarity=-0.013 Sum_probs=97.4
Q ss_pred HHhccCCHHHHHHHHHHHHhC---CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-C-CHHHHH
Q 048794 797 GFGKTGDVETACELFKQMIKG---GI---RPD-LKSYSVLVDCLCMVGRVDDALHYFEELKL-----NGLD-A-DTISYN 862 (967)
Q Consensus 797 ~~~~~~~~~~A~~~~~~~~~~---~~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~-~~~~~~ 862 (967)
.+..+|++++|+.+++++++. -+ .|+ ..++++|+.+|..+|++++|..+++++++ .|.. | ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456889999999999998761 12 233 46789999999999999999999999874 2311 1 345788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH---cCCCCC-H---HhHHHHHHHHHhcCCHHHHHHhhcCCCc
Q 048794 863 FMINGLGRSGRIEEALSLFDEMKK---RGISPD-L---YTYNSLILNLGRAGMVEEARKLAGGNCF 921 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 921 (967)
.|+.+|...|++++|..+++++++ .-+.|+ + .....+..++...|.+++|+.++.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999872 113333 2 4556788888889999999999988754
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.96 E-value=4.2e-05 Score=64.43 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048794 770 EEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEE 848 (967)
Q Consensus 770 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 848 (967)
++|+..|+++++.. +.+...+..++.+|...|++++|+..|+++++. .|+ ..++..++.++...|++++|...|++
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35778888888764 336678888888888888888888888888873 454 67788888888888888888888888
Q ss_pred HHH
Q 048794 849 LKL 851 (967)
Q Consensus 849 ~~~ 851 (967)
+++
T Consensus 79 al~ 81 (115)
T 2kat_A 79 GLA 81 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.92 E-value=0.0001 Score=58.68 Aligned_cols=78 Identities=18% Similarity=0.281 Sum_probs=40.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGL 868 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 868 (967)
.+..++..+...|++++|+..|+++++. .|+ ..++..++.++...|++++|...++++++.+ +.+..++..++.++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 4555555555555555555555555542 232 4455555555555555555555555555432 22344455555554
Q ss_pred Hh
Q 048794 869 GR 870 (967)
Q Consensus 869 ~~ 870 (967)
..
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.80 E-value=1.5e-05 Score=64.97 Aligned_cols=63 Identities=17% Similarity=0.109 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 823 LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 823 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
..++..++.+|...|++++|+..|+++++.+ +.+..++..++.+|...|++++|++.++++++
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5677777888888888888888888877653 33556777778888888888888888877764
No 209
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.79 E-value=2.9e-05 Score=66.61 Aligned_cols=88 Identities=20% Similarity=0.103 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHhHHHHHHHHHhcCCHHHHHH
Q 048794 840 DDALHYFEELKLNGLDADTISYNFMINGLGRSG---RIEEALSLFDEMKKRGISP--DLYTYNSLILNLGRAGMVEEARK 914 (967)
Q Consensus 840 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 914 (967)
..+.+.|.+....+ +++..+...+++++++++ +.++++.+++.+.+.. .| +.+.++.|+-.+++.|+|++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34455555555544 456666666777777766 5557777777776542 23 23666677777777777777777
Q ss_pred hhcCCCcCCCCcccc
Q 048794 915 LAGGNCFVQPSEFVS 929 (967)
Q Consensus 915 ~~~~~l~~~p~~~~~ 929 (967)
+++++++.+|+|.-+
T Consensus 93 y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHhcCCCCHHH
Confidence 777777777777665
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.65 E-value=0.00031 Score=70.65 Aligned_cols=73 Identities=15% Similarity=0.059 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 855 DADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 855 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
+.++.++..++..+...|++++|...+++++.. .|+...|..++.++...|++++|+..+++++.++|..+..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence 446777877777777779999999999998875 3677777788888888899999999999999999988764
No 211
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.64 E-value=0.00019 Score=58.28 Aligned_cols=63 Identities=21% Similarity=0.264 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 787 NCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 787 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
+...+..++.+|...|++++|+..|+++++. .|+ ..++..++.+|...|++++|...|+++++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5667777888888888888888888888773 454 56777888888888888888888887764
No 212
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.45 E-value=0.00018 Score=58.90 Aligned_cols=69 Identities=7% Similarity=-0.066 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 861 YNFMINGLGRSGRIEEALSLFDEMKKRG------ISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 861 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
+..++..+.+.|+++.|...++.+++.. -.+...++..|+.++.+.|++++|+.++++++.++|+++.+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 3345555555555555555555544210 01123455555555555555555555555555555555554
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.45 E-value=0.00012 Score=59.41 Aligned_cols=66 Identities=18% Similarity=0.102 Sum_probs=59.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-hHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 863 FMINGLGRSGRIEEALSLFDEMKKRGISPDLY-TYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
..+..+...|++++|+..++++++. .+.+.. .+..++.++...|++++|+..++++++++|+++.+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQT-EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 4677889999999999999999974 344567 99999999999999999999999999999999986
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.40 E-value=0.00037 Score=55.10 Aligned_cols=64 Identities=13% Similarity=0.087 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 822 DLKSYSVLVDCLCMVGR---VDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 822 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
+...+..++.++...++ .++|..+++++++.+ +.+..++..++..+...|++++|+..|+++++
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555555555543333 456666666666532 23445555566666666666666666666654
No 215
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.35 E-value=0.00026 Score=58.21 Aligned_cols=88 Identities=18% Similarity=0.093 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCC-CH-HhHHHHHHHHHhcCCHHHHHH
Q 048794 840 DDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEE---ALSLFDEMKKRGISP-DL-YTYNSLILNLGRAGMVEEARK 914 (967)
Q Consensus 840 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~-~~-~~~~~l~~~~~~~g~~~~A~~ 914 (967)
..+.+.|.+....+ .++..+-..++++++++.+..+ ++.+++.+.+.+ .| +. +.++.|+-.+++.|+|++|.+
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34445555555444 4667777777888877776555 777777776532 12 22 566777777888888888888
Q ss_pred hhcCCCcCCCCcccc
Q 048794 915 LAGGNCFVQPSEFVS 929 (967)
Q Consensus 915 ~~~~~l~~~p~~~~~ 929 (967)
+++.+|+.+|+|.-+
T Consensus 96 ~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHHhCCCCHHH
Confidence 888888888877665
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.32 E-value=0.00064 Score=71.86 Aligned_cols=85 Identities=6% Similarity=-0.105 Sum_probs=49.2
Q ss_pred cCCHHHHHHHHHHHHh---CCCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CC-CHHHHHHHHH
Q 048794 801 TGDVETACELFKQMIK---GGIRP---D-LKSYSVLVDCLCMVGRVDDALHYFEELKL-----NGL-DA-DTISYNFMIN 866 (967)
Q Consensus 801 ~~~~~~A~~~~~~~~~---~~~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~~-~~~~~~~l~~ 866 (967)
.|++++|+.++++.++ .-+.| + ..++++|+.+|..+|++++|+.+++++++ .|. .| ....++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4566666666666554 11122 2 24556666666666666666666666652 221 11 2345666777
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 048794 867 GLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 867 ~~~~~g~~~~A~~~~~~~~ 885 (967)
+|...|++++|..++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 7777777777777777665
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.22 E-value=0.0093 Score=60.02 Aligned_cols=74 Identities=14% Similarity=0.061 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048794 785 KPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYN 862 (967)
Q Consensus 785 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 862 (967)
+.+..+|..++..+...|++++|+..+++++.. .|+...+..++.++...|++++|.+.|.++... +|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 345667777776666678888888888888774 477767777788888888888888888887773 56666554
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.19 E-value=0.0015 Score=69.04 Aligned_cols=87 Identities=9% Similarity=-0.102 Sum_probs=67.4
Q ss_pred cCCCHHHHHHHHHHHHHC---CCCC---CH-HHHHHHHHHHhccCCHHHHHHHHHHHHh-----CC-CCCC-HHHHHHHH
Q 048794 765 KSGRLEEAKKLFEEMLDY---GCKP---NC-VIYNILINGFGKTGDVETACELFKQMIK-----GG-IRPD-LKSYSVLV 830 (967)
Q Consensus 765 ~~g~~~~A~~~~~~~~~~---~~~~---~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-~~p~-~~~~~~l~ 830 (967)
..|++++|+.+++++++. -+.| +. .++++++.+|...|++++|+.+++++++ .| ..|+ ..++++|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457888999988888752 1122 22 3788999999999999999999999875 12 2344 36788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 048794 831 DCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 831 ~~~~~~g~~~~A~~~~~~~~~ 851 (967)
.+|..+|++++|..+|+++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999874
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.12 E-value=0.0032 Score=66.71 Aligned_cols=89 Identities=10% Similarity=0.005 Sum_probs=53.0
Q ss_pred HHHcCCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHh-----C-CCCCC-HHHHH
Q 048794 762 GLSKSGRLEEAKKLFEEMLDYG---CKPN----CVIYNILINGFGKTGDVETACELFKQMIK-----G-GIRPD-LKSYS 827 (967)
Q Consensus 762 ~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~-~~~p~-~~~~~ 827 (967)
-+.+.|++++|+..++++++.. ..|+ ..+++.++.+|...|++++|+.++++++. . ...|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445566777777776666421 1111 12566677777777777777777776654 1 12233 24566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 048794 828 VLVDCLCMVGRVDDALHYFEELK 850 (967)
Q Consensus 828 ~l~~~~~~~g~~~~A~~~~~~~~ 850 (967)
.|+.+|...|++++|..++++++
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 67777777777777777777665
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.08 E-value=0.0052 Score=52.73 Aligned_cols=81 Identities=15% Similarity=0.096 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 048794 769 LEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTG---DVETACELFKQMIKGGIRP--DLKSYSVLVDCLCMVGRVDDAL 843 (967)
Q Consensus 769 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 843 (967)
...+.+.|.+..+.+. ++..+...+++++++.+ +.++++.++++..+.+ .| ....++.|+-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3444445554444332 45555555555555555 3445555555555531 13 1344555555555555555555
Q ss_pred HHHHHHHH
Q 048794 844 HYFEELKL 851 (967)
Q Consensus 844 ~~~~~~~~ 851 (967)
++++.+++
T Consensus 92 ~y~~~lL~ 99 (152)
T 1pc2_A 92 KYVRGLLQ 99 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555554
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.08 E-value=0.01 Score=56.95 Aligned_cols=84 Identities=12% Similarity=0.058 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhc-C
Q 048794 839 VDDALHYFEELKLNGLDAD---TISYNFMINGLGRS-----GRIEEALSLFDEMKKRGISPD--LYTYNSLILNLGRA-G 907 (967)
Q Consensus 839 ~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~-g 907 (967)
..+|...++++++. +|+ ..+|..++..|... |+.++|.++|+++++ +.|+ ..++..++..+.+. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 44566666666663 343 34566666666663 677777777777665 3332 46666666666663 6
Q ss_pred CHHHHHHhhcCCCcCCCCc
Q 048794 908 MVEEARKLAGGNCFVQPSE 926 (967)
Q Consensus 908 ~~~~A~~~~~~~l~~~p~~ 926 (967)
++++|.+++++++..+|+.
T Consensus 255 d~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPES 273 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGG
T ss_pred CHHHHHHHHHHHHcCCCCC
Confidence 6777777777777666664
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.03 E-value=0.0042 Score=65.85 Aligned_cols=89 Identities=12% Similarity=0.026 Sum_probs=70.2
Q ss_pred HHhccCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CC-CHHHHH
Q 048794 797 GFGKTGDVETACELFKQMIKG---GIRPD----LKSYSVLVDCLCMVGRVDDALHYFEELKL-----NGL-DA-DTISYN 862 (967)
Q Consensus 797 ~~~~~~~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~~-~~~~~~ 862 (967)
-+...|++++|+.+++++++. -..|+ ..++++++.+|...|++++|+.++++++. .|. .| ....++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 345678999999999999862 12233 36788999999999999999999999874 221 11 345788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 048794 863 FMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
.|+.+|...|++++|..++++++
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 89999999999999999999987
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.99 E-value=0.034 Score=53.43 Aligned_cols=82 Identities=16% Similarity=0.117 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCH
Q 048794 804 VETACELFKQMIKGGIRPD---LKSYSVLVDCLCMV-----GRVDDALHYFEELKLNGLDADTISYNFMINGLGRS-GRI 874 (967)
Q Consensus 804 ~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 874 (967)
...|...++++++ +.|+ ..+|..++..|... |+.++|.++|+++++.+...+..++..+++.++.. |+.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 5788888999988 6888 46889999999884 99999999999999853222477788889988884 999
Q ss_pred HHHHHHHHHHHHc
Q 048794 875 EEALSLFDEMKKR 887 (967)
Q Consensus 875 ~~A~~~~~~~~~~ 887 (967)
++|.+.+++++..
T Consensus 257 ~~a~~~L~kAL~a 269 (301)
T 3u64_A 257 AGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999964
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.86 E-value=0.0067 Score=47.80 Aligned_cols=65 Identities=11% Similarity=0.080 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHhccCC---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 786 PNCVIYNILINGFGKTGD---VETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 786 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
.+...+..++.++...++ .++|..+++++++ ..|+ ..+...++..+...|++++|+..|+++++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344555555555443332 4666666666665 3444 455556666666666666666666666653
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.75 E-value=0.013 Score=47.66 Aligned_cols=77 Identities=10% Similarity=0.067 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 048794 822 DLKSYSVLVDCLCMVGRVDDALHYFEELKLN---G---LDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYT 895 (967)
Q Consensus 822 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 895 (967)
+...+..+|..+...|+++.|..+|+.+++. + -.+...++..|+.++.+.|++++|...++++++. .|.+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-~P~~~~~ 82 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-DPEHQRA 82 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCCHHH
Confidence 3445667777777777777777777777642 0 0123456777777777777777777777777753 2333344
Q ss_pred HHHH
Q 048794 896 YNSL 899 (967)
Q Consensus 896 ~~~l 899 (967)
...+
T Consensus 83 ~~n~ 86 (104)
T 2v5f_A 83 NGNL 86 (104)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 4433
No 226
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.56 E-value=0.0054 Score=50.44 Aligned_cols=74 Identities=12% Similarity=-0.005 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 855 DADTISYNFMINGLGRSGR---IEEALSLFDEMKKRGISPD-LYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 855 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.|++.+-..+++++.++.+ ..+++.+++.+.+.+ +.+ -+.+..|+-.+++.|+|++|.++.+.+|+.+|+|.-+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 4566666666666666663 335666666666432 112 2556666666777777777777777777777776654
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.41 E-value=0.0057 Score=51.06 Aligned_cols=72 Identities=13% Similarity=-0.001 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 856 ADTISYNFMINGLGRSGR---IEEALSLFDEMKKRGISPDL-YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 856 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
|+..+-..+++++.++.+ ..+++.+++.+.+.+ +.+. +.++.|+-.+++.|+|++|.++.+.+|+.+|+|.-
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~-~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 444444445555544442 223444444444321 1112 44444455555555555555555555555555543
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.04 E-value=0.046 Score=44.96 Aligned_cols=81 Identities=15% Similarity=0.057 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 048794 769 LEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVET---ACELFKQMIKGGIRP--DLKSYSVLVDCLCMVGRVDDAL 843 (967)
Q Consensus 769 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 843 (967)
+..+.+.|.+....| .++..+-..+++++.+.++... ++.+++.+.+.+ .| .....+.|+-.+.+.|+|++|.
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 344444454444433 2455555555555555554433 555555555531 23 1244455555555555555555
Q ss_pred HHHHHHHH
Q 048794 844 HYFEELKL 851 (967)
Q Consensus 844 ~~~~~~~~ 851 (967)
++++.+++
T Consensus 95 ~~~~~lL~ 102 (126)
T 1nzn_A 95 KYVRGLLQ 102 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.78 E-value=0.018 Score=49.74 Aligned_cols=132 Identities=11% Similarity=0.011 Sum_probs=67.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhC-CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHH
Q 048794 792 NILINGFGKTGDVETACELFKQMIKG-GIRPD-------LKSYSVLVDCLCMVGRVDDALHYFEELKLN--GLDADTISY 861 (967)
Q Consensus 792 ~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 861 (967)
..-+..+...+.++.|+-+.+.++.. +.+|+ ..++..++.++...|+|.+|...|++++.. .+.......
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 33344456667777777776665432 12333 134566677777777777777777776531 111111111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccccccceeee
Q 048794 862 NFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVSSELQVIY 936 (967)
Q Consensus 862 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~l~~~~ 936 (967)
..++ ....... ....+.+.++-+.++.++.+.|++.+|+..++.+-...-.-..-..||.+|
T Consensus 104 ~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 104 PSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp --------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred cccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 1010 0000000 001333456777788888888999999988887654433332224555555
No 230
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.74 E-value=1.6e-05 Score=80.65 Aligned_cols=140 Identities=12% Similarity=0.176 Sum_probs=86.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 048794 401 DVIVMNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLH 480 (967)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 480 (967)
.+.+|+.|+.+....+...+|++.|-+.. |+..|..++....+.|.+++-...+....+.. -++.+=..|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 34567777777777777777766653322 44456677777777888887777776665542 23333446677
Q ss_pred HHHhcCCHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHH
Q 048794 481 CLCKNEEVDLAMKMLYEMTPRNCWPDVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDA 560 (967)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 560 (967)
+|.+.++..+-.+++ . .|+..-...++..+...|.++.|.-+|..+. .+..|+..+...|++..|
T Consensus 125 ayAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~is--------N~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC--------CCTTTSSSSSSCSGGGSS
T ss_pred HHHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCc--------cHHHHHHHHHHHHHHHHH
Confidence 777777755432221 1 2455555667777778888877766664433 345566666777777766
Q ss_pred HHH
Q 048794 561 FRL 563 (967)
Q Consensus 561 ~~~ 563 (967)
++.
T Consensus 190 Vda 192 (624)
T 3lvg_A 190 VDG 192 (624)
T ss_dssp TTT
T ss_pred HHH
Confidence 554
No 231
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.71 E-value=0.27 Score=57.95 Aligned_cols=97 Identities=15% Similarity=0.069 Sum_probs=58.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcC
Q 048794 687 NLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKS 766 (967)
Q Consensus 687 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 766 (967)
..++..+.+.|.+++|+.+.+ +.. .-.......|++++|.++.+. ..+...|..++..+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQLTLARDLLTD------ESAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHc
Confidence 455566677777777765542 111 113344567788887777542 23456777888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 048794 767 GRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACEL 810 (967)
Q Consensus 767 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 810 (967)
|+++.|++.|.++.+ |..+...|...|+.+....+
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 888888888887653 12334444456665554433
No 232
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.60 E-value=1.2 Score=47.33 Aligned_cols=170 Identities=14% Similarity=0.063 Sum_probs=105.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHh----CCCCCCH--H
Q 048794 756 YGPLIDGLSKSGRLEEAKKLFEEMLDYGC-KPN----CVIYNILINGFGKTGDVETACELFKQMIK----GGIRPDL--K 824 (967)
Q Consensus 756 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p~~--~ 824 (967)
...++..|...|++.+|.+++..+...-. ..+ ...+...+..|...+++.+|..+++++.. ....|+. .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 45688999999999999999999864311 112 22667778889999999999999998742 2222332 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 048794 825 SYSVLVDCLCMVGRVDDALHYFEELKLN-GLDADTI----SYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSL 899 (967)
Q Consensus 825 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 899 (967)
.+...+..+...++|.+|.+.|.++.+. ....++. +...++....-.+....-.++..+......-++...+..+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L 299 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence 4567788889999999999999988642 1111222 1222222222222112222223333221122334567777
Q ss_pred HHHHHhc--CCHHHHHHhhcCCCcCCCC
Q 048794 900 ILNLGRA--GMVEEARKLAGGNCFVQPS 925 (967)
Q Consensus 900 ~~~~~~~--g~~~~A~~~~~~~l~~~p~ 925 (967)
..++... .+++...+.++..+.-+|-
T Consensus 300 ~k~f~~~~L~~~~~~~~~~~~~L~~~~~ 327 (445)
T 4b4t_P 300 VKLFTTNELMRWPIVQKTYEPVLNEDDL 327 (445)
T ss_dssp HHHHHHCCSSSHHHHHHHTCSSTTTCCS
T ss_pred HHHHHhchHhhhHHHHHHHHHHhcccch
Confidence 7777654 5789999999988766654
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.54 E-value=0.26 Score=41.50 Aligned_cols=112 Identities=5% Similarity=0.114 Sum_probs=66.9
Q ss_pred ChhhHHHHHHHHHhcCcH------HHHHHHHHHHHHcCCCCCHh-hHHHHHHH------HHccCCHHHHHHHHHHHHHcC
Q 048794 51 NAYSYNGFIHFILQSGFC------REALAVYKRVVSEGIKPSLK-TYSALMVA------AGKRRNIKTVMNLLEEMERLG 117 (967)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~~~~~~a~~~~~~~~~~~ 117 (967)
++.+|-..+..+-+.|++ +..+++|++.... ++|+.. .+...+.. +...++.++|+++|+.+...+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 666776777777666777 6677777777664 445431 11111110 123367777777777776554
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048794 118 LRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLID 165 (967)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 165 (967)
-.. ..+|...++.-.++|+++.|.+++.+....+. .+.......++
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~-k~~~~le~a~~ 136 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA-VPLEMLEIALR 136 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-BCHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC-CcHHHHHHHHH
Confidence 333 66677777777778888888888877776653 23334444333
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.51 E-value=0.45 Score=39.00 Aligned_cols=141 Identities=18% Similarity=0.192 Sum_probs=97.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChhhH
Q 048794 237 LCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILGVQPTAYTYILFIDYYGKSADPGKA 316 (967)
Q Consensus 237 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 316 (967)
+.-.|.+++..+++.+..+. .+..-+|.++.-....-+-+-..++++..-+. +. ...+|+....
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-FD------------is~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FD------------LDKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SC------------GGGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-cC------------cHhhhcHHHH
Confidence 34568888888888877664 36777888887777777777777777765432 11 1234444444
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048794 317 LETFEKMKIRGIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQVDEAVTLLSEMVEN 396 (967)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 396 (967)
...+-.+-. +.......+..+...|.-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++-+.
T Consensus 81 i~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 444433321 4455666777888889888888888886442 3677888888889999999999999999888887
Q ss_pred CCC
Q 048794 397 GCE 399 (967)
Q Consensus 397 ~~~ 399 (967)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 743
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.34 E-value=1.1 Score=39.64 Aligned_cols=132 Identities=14% Similarity=0.076 Sum_probs=86.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccC
Q 048794 22 TIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRR 101 (967)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (967)
+-|....+.|+++.|.++.+.+ .+...|..|......+|+++-|..+|.+..+ +..+.-.+.-.|
T Consensus 10 ~rF~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg 74 (177)
T 3mkq_B 10 IRFDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTG 74 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhC
Confidence 3456667888888888776655 2678888888888888888888888877642 344445566677
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 048794 102 NIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFL 181 (967)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 181 (967)
+.+...++-+.....| -++.....+...|+++++.++|.+... .|.. +......|..+.|.++.+
T Consensus 75 ~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------~~~A~t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 75 DVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------YAVAKANGDEAAASAFLE 139 (177)
T ss_dssp CHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------HHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------HHHHHHcCcHHHHHHHHH
Confidence 7777776666665544 134455567778888888888866432 1111 111122455666777766
Q ss_pred HH
Q 048794 182 KM 183 (967)
Q Consensus 182 ~~ 183 (967)
++
T Consensus 140 ~~ 141 (177)
T 3mkq_B 140 QA 141 (177)
T ss_dssp HT
T ss_pred Hh
Confidence 65
No 236
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.27 E-value=0.29 Score=57.64 Aligned_cols=183 Identities=14% Similarity=0.061 Sum_probs=103.9
Q ss_pred HHHccCChHHHHH-HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHH
Q 048794 692 GYGKSGRVEELLK-LYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLE 770 (967)
Q Consensus 692 ~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 770 (967)
.....+++++|.+ ++..+ + +......++..+...|..++|+...+. .. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHH
Confidence 3345688888866 44111 1 122235666777788888888866521 11 1133456789999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 771 EAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELK 850 (967)
Q Consensus 771 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 850 (967)
+|.++.+.+ .+...|..++..+.+.++++.|++.|.++.+ +..+..++...|+.+...++.+.+.
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 999885432 3678999999999999999999999998743 2223333333444444333333333
Q ss_pred HCCCCCCH-H-------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCCHHHHH
Q 048794 851 LNGLDADT-I-------SYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL----YTYNSLILNLGRAGMVEEAR 913 (967)
Q Consensus 851 ~~~~~~~~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~ 913 (967)
..+ ..+. . -+...+++|.+.|++++|..+-+.. .|.. .+...+...+...|+...|.
T Consensus 735 ~~~-~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~-----~~~~~~i~~~~~~~~~~L~~~~~~~~a~ 803 (814)
T 3mkq_A 735 TTG-KFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTY-----GLGDNEVNDIVTKWKENLILNGKNTVSE 803 (814)
T ss_dssp HTT-CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHT-----TCCHHHHHHHHHHHHHHHHTTTCHHHHT
T ss_pred HcC-chHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHh-----CCChHHHHHHHHHHHHHHHhccchhHHH
Confidence 221 0000 0 0112334455566666665554432 2233 55566666666777654443
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.21 E-value=0.16 Score=42.71 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC
Q 048794 767 GRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIR 820 (967)
Q Consensus 767 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 820 (967)
++.++|.++|+.+++.+ +.=..+|...+..-.++|+..+|.+++.+.+..+..
T Consensus 74 ~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 55666666666665432 212445655566566666666666666666664433
No 238
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.18 E-value=0.46 Score=39.76 Aligned_cols=72 Identities=8% Similarity=-0.009 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 048794 820 RPDLKSYSVLVDCLCMVGR---VDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL 893 (967)
Q Consensus 820 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 893 (967)
.|+..+-+.+++++.++.+ ..+++.+++.....+......++..|+-.+++.|++++|.++.+.+++ ++|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 4555566666666666554 234556666555432112334555566666666666666666666664 44543
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.06 E-value=0.23 Score=41.00 Aligned_cols=72 Identities=10% Similarity=0.015 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 048794 820 RPDLKSYSVLVDCLCMVGRV---DDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDL 893 (967)
Q Consensus 820 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 893 (967)
.|+..+-..+++++.++.+. .+++.+++.....+..-...++..|+-++.+.|++++|.++.+.+++ +.|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 45555666666666655542 34556665555432111344555566666666666666666666664 44443
No 240
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.73 E-value=0.0001 Score=74.96 Aligned_cols=266 Identities=12% Similarity=0.107 Sum_probs=165.1
Q ss_pred CHHHHHHHHHHHhhcCcHhHHHHHHHHHHhhcCCChhHHHhHHHHHHhcCChhHHHHHHHHHHhhcCCCcchhhHhhhhh
Q 048794 506 DVLTYNTIIYGLVKEQRVKDAIWFFHQMRKWLYPDHITLCTLLPGVVKDGQIEDAFRLAKCSIYQIGTRAERQFWQDLVG 585 (967)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (967)
.+.+|..++.++...+++.+|++.|= ...|+..+...+.+..+.|.+++-++++..+.+.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI-----kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--------------- 112 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI-----KADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--------------- 112 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC-----CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---------------
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH-----hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---------------
Confidence 45567778888888888887777652 2345556666777777777777777776643221
Q ss_pred hhcccCCCcchHHHHHHHHhcCCCCCCcchHHHHHHHHhhccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 048794 586 GILTVAGPDKSILFAEKLVCNGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATE 665 (967)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 665 (967)
..++.+-..++..|.+.++..+-.+++ ..++..-...++.-|...|.++
T Consensus 113 -----------------------~ke~~IDteLi~ayAk~~rL~elEefl--------~~~N~A~iq~VGDrcf~e~lYe 161 (624)
T 3lvg_A 113 -----------------------ARESYVETELIFALAKTNRLAELEEFI--------NGPNNAHIQQVGDRCYDEKMYD 161 (624)
T ss_dssp -----------------------CCSTTTTHHHHHHHHTSCSSSTTTSTT--------SCCSSSCTHHHHHHHHHSCCST
T ss_pred -----------------------hcccccHHHHHHHHHhhCcHHHHHHHH--------cCCCcccHHHHHHHHHHccCHH
Confidence 233334445666666666554433322 1122222344556666666666
Q ss_pred HHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 666 MGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLV 745 (967)
Q Consensus 666 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 745 (967)
.|.-+|..+- -|..|+..+.+.|++..|++.-++ ..+..+|..+..+|...+++.-|.-.--.++
T Consensus 162 AAKilys~is---------N~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniI 226 (624)
T 3lvg_A 162 AAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV 226 (624)
T ss_dssp TSSTTGGGSC---------CCTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH
T ss_pred HHHHHHHhCc---------cHHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhc
Confidence 6655543222 233455566677777777655333 2366789999999999999988876666655
Q ss_pred hCCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC---
Q 048794 746 SGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPD--- 822 (967)
Q Consensus 746 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--- 822 (967)
-. ++ -+..++..|...|.+++-+.+++..+... ......+..|+-.|++- ++++-.+.++-....=.-|.
T Consensus 227 vh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvir 299 (624)
T 3lvg_A 227 VH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLR 299 (624)
T ss_dssp CC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHH
T ss_pred cc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHH
Confidence 43 11 22345677899999999999999988542 45677899999999876 55666666554333211232
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHH
Q 048794 823 ----LKSYSVLVDCLCMVGRVDDALH 844 (967)
Q Consensus 823 ----~~~~~~l~~~~~~~g~~~~A~~ 844 (967)
...|.-+...|.+..++|.|..
T Consensus 300 acE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 300 AAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 2246667777777777776543
No 241
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.69 E-value=2 Score=37.88 Aligned_cols=103 Identities=16% Similarity=0.174 Sum_probs=74.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHH
Q 048794 130 RILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIE 209 (967)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 209 (967)
......|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|..... +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 4556889999999888776 2678899999999999999999999988753 345556667778887
Q ss_pred HHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048794 210 VVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLM 253 (967)
Q Consensus 210 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 253 (967)
....+-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 7776665554443 1344445566678888888887554
No 242
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.66 E-value=2 Score=44.01 Aligned_cols=27 Identities=7% Similarity=-0.186 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048794 649 EMYNYLIHGLLEVHATEMGLDLFTTMK 675 (967)
Q Consensus 649 ~~~~~l~~~~~~~~~~~~A~~~~~~~~ 675 (967)
.+...++..|.+.|+.++..+++....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445556666666666666655555443
No 243
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.64 E-value=0.72 Score=37.85 Aligned_cols=48 Identities=17% Similarity=0.224 Sum_probs=24.2
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 048794 764 SKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQM 814 (967)
Q Consensus 764 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 814 (967)
.-.|..++..++..+.... .+..-+|+.+--....-+.+--.++++..
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~I 65 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKI 65 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHH
Confidence 3356667777777666652 23334444443333444444444444444
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.51 E-value=14 Score=42.64 Aligned_cols=173 Identities=13% Similarity=0.119 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHHHHH
Q 048794 700 EELLKLYEEMSFRGCKPNTI----SHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKL 775 (967)
Q Consensus 700 ~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 775 (967)
+++.+.+..++... +.. +-.+++..+.-.|+.+-...++..+.+.. +.+..-...++-++...|+.+.+..+
T Consensus 471 eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~l 546 (963)
T 4ady_A 471 IEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDL 546 (963)
T ss_dssp HHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHH
T ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHH
Confidence 45556666655432 211 22233344445566555555555554431 11111222233334456677777767
Q ss_pred HHHHHHCCCCCCHHH----HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHH
Q 048794 776 FEEMLDYGCKPNCVI----YNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYS--VLVDCLCMVGRVDDALHYFEEL 849 (967)
Q Consensus 776 ~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~ 849 (967)
++.+... .+..+ -..++.+|+..|+.....+++..+.+. ++..+.. .++-.+...|+.+.+.+++...
T Consensus 547 i~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~rlv~~L 620 (963)
T 4ady_A 547 ITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVPRIVQLL 620 (963)
T ss_dssp HHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTG
T ss_pred HHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 6666652 23332 223444566777755444466666652 3322222 2222233345544444544433
Q ss_pred HHCCCCCCHHHHHHHHHHHH--hcCC-HHHHHHHHHHHH
Q 048794 850 KLNGLDADTISYNFMINGLG--RSGR-IEEALSLFDEMK 885 (967)
Q Consensus 850 ~~~~~~~~~~~~~~l~~~~~--~~g~-~~~A~~~~~~~~ 885 (967)
.+. .++.+....+.+++ ..|. ..++++.+..+.
T Consensus 621 ~~~---~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 621 SKS---HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp GGC---SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred Hhc---CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 332 23333333333322 2222 256666666665
No 245
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.16 E-value=15 Score=42.23 Aligned_cols=55 Identities=9% Similarity=0.019 Sum_probs=28.8
Q ss_pred HHHhcCCHHHHHHHHHhhccCCCCCCHH--HHHHHHHHHhhcCcHhHHHHHHHHHHh
Q 048794 481 CLCKNEEVDLAMKMLYEMTPRNCWPDVL--TYNTIIYGLVKEQRVKDAIWFFHQMRK 535 (967)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 535 (967)
+....|+.++++.++...+..+...+.. .-..++-+....|...++..++.....
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~ 439 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIV 439 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Confidence 4556677777777777776532111222 222233334455555566666665543
No 246
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.83 E-value=18 Score=39.88 Aligned_cols=200 Identities=10% Similarity=-0.019 Sum_probs=109.8
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHH----HHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCCHHHH
Q 048794 697 GRVEELLKLYEEMSFRGCKPNTISHNIVIS----GLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEA 772 (967)
Q Consensus 697 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 772 (967)
.+.+.|...+....... ..+......+-. .....+...++...+.+......... ...-.+..-.+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS--LIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH--HHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChH--HHHHHHHHHHHCCCHHHH
Confidence 47889999998876543 223332222222 22233435566666666554422222 222223333456899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048794 773 KKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLN 852 (967)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 852 (967)
...|+.+.... .........++.++...|+.++|..+|.++... . +|+.+... .+.|..-. ... .
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~---~fYg~lAa-~~Lg~~~~-~~~------~ 369 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R---GFYPMVAA-QRIGEEYE-LKI------D 369 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C---SHHHHHHH-HHTTCCCC-CCC------C
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---ChHHHHHH-HHcCCCCC-CCC------C
Confidence 99998876531 123445677788888889999999999988751 1 34433321 22232100 000 0
Q ss_pred CCCC--C-H-H--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHhhc
Q 048794 853 GLDA--D-T-I--SYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLAG 917 (967)
Q Consensus 853 ~~~~--~-~-~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 917 (967)
...+ . . . .....+..+...|....|...+..+.+. . +..-...++......|.+..++....
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 0011 0 0 0 1122345677888888888888887742 2 33334456666677777777765544
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.35 E-value=1.3 Score=38.35 Aligned_cols=63 Identities=8% Similarity=0.026 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhcCcHhHHHHHHHHHHhhc--CCC-------hhHHHhHHHHHHhcCChhHHHHHHHHHHhh
Q 048794 508 LTYNTIIYGLVKEQRVKDAIWFFHQMRKWL--YPD-------HITLCTLLPGVVKDGQIEDAFRLAKCSIYQ 570 (967)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 570 (967)
..+..-+..+...|.++.|+.+...+.... .++ ..++..++.+++..++|-.|...|++++..
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 344455666777888888887777765432 222 125677778888888888888888877654
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.57 E-value=19 Score=37.94 Aligned_cols=258 Identities=12% Similarity=0.063 Sum_probs=144.7
Q ss_pred hccHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHH----HHHcc
Q 048794 625 QKKALAAKDLFVKFTENLG----VTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLD----GYGKS 696 (967)
Q Consensus 625 ~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~ 696 (967)
.+++..|.+.+..+.+... ......+...++..|...++++...+.+.-+.+..... ..+...+++ .....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 4778888887766654432 34456677888888999999988877776555431111 111222222 22222
Q ss_pred CChHHHHH--HHHHHHhCCCCCCh--------hhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---hhcHHHHHH
Q 048794 697 GRVEELLK--LYEEMSFRGCKPNT--------ISHNIVISGLVKSNSIDKAMDLFYNLVSG--GFSPT---PCTYGPLID 761 (967)
Q Consensus 697 g~~~~A~~--~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~ 761 (967)
...+.... +...... ..... .....+...+...|++.+|.+++..+... +..+. ...+...+.
T Consensus 108 ~~~d~~~~~~~i~~l~~--vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRV--VTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHHHHHHHHHHCCSS--SSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33332111 1111111 11111 12356778888999999999999887654 22221 245667788
Q ss_pred HHHcCCCHHHHHHHHHHHH----HCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCHH----HHHHHH
Q 048794 762 GLSKSGRLEEAKKLFEEML----DYGCKPNCV--IYNILINGFGKTGDVETACELFKQMIKG-GIRPDLK----SYSVLV 830 (967)
Q Consensus 762 ~~~~~g~~~~A~~~~~~~~----~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~----~~~~l~ 830 (967)
.|...+++..|..+++++. .....|+.. .+...+..+...++|.+|-..|..+.+. ....+.. +...++
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v 265 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIV 265 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 8999999999999998874 222222322 4566677788889999999988888652 0111221 222222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 048794 831 DCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRS--GRIEEALSLFDEMK 885 (967)
Q Consensus 831 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~ 885 (967)
.+..-.+...+--.+..+......-++...+..+..+|... .++....+.|...+
T Consensus 266 ~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 266 YFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 22222222222223333332211123456677788887654 36777777666544
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.27 E-value=1.4 Score=49.42 Aligned_cols=59 Identities=12% Similarity=0.052 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048794 125 FTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMK 184 (967)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 184 (967)
...-...+...|+++-|+++-++....- |.+-.+|..|..+|+..|+++.|+-.+..+.
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3444555666777777777777776652 4456677777777777777777777777653
No 250
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=89.82 E-value=27 Score=38.49 Aligned_cols=197 Identities=12% Similarity=0.012 Sum_probs=109.8
Q ss_pred hcCCHHHHHHHHHHHHhCC-CCCCh--hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 048794 730 KSNSIDKAMDLFYNLVSGG-FSPTP--CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVET 806 (967)
Q Consensus 730 ~~~~~~~A~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 806 (967)
...+.+.|...+....... ..+.. .....++......+...++...+.+.... ..+.......+....+.|+++.
T Consensus 226 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 226 ARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHH
T ss_pred HhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHH
Confidence 3447889999998876542 22211 12223333444455456777777776653 3344434444444456799999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 807 ACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 807 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
|...|+.+... ........+.++.++...|+.++|..+|+++... .+ .|-.++ ..+.|..-. .. . .
T Consensus 304 a~~~~~~l~~~-~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg~lA--a~~Lg~~~~-~~----~-~ 369 (618)
T 1qsa_A 304 LNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVA--AQRIGEEYE-LK----I-D 369 (618)
T ss_dssp HHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHH--HHHTTCCCC-CC----C-C
T ss_pred HHHHHHHcccc-ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHHHHH--HHHcCCCCC-CC----C-C
Confidence 99999887652 1123556788899999999999999999998752 22 233232 123332100 00 0 0
Q ss_pred cCCCCCH------HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccccccceeeeccCCCccc
Q 048794 887 RGISPDL------YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFVSSELQVIYAENPRATS 944 (967)
Q Consensus 887 ~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~l~~~~~~~g~~~~ 944 (967)
..++.. .-...-+..+...|...+|...+..+....+ ......++.+....|.++.
T Consensus 370 -~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~-~~~~~~la~~a~~~~~~~~ 431 (618)
T 1qsa_A 370 -KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKS-KTEQAQLARYAFNNQWWDL 431 (618)
T ss_dssp -CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHTTCHHH
T ss_pred -CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCChHH
Confidence 011110 0112345568888999999888776654321 1111345555555555543
No 251
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.45 E-value=1 Score=50.57 Aligned_cols=55 Identities=16% Similarity=0.010 Sum_probs=45.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 048794 758 PLIDGLSKSGRLEEAKKLFEEMLDYGCKP-NCVIYNILINGFGKTGDVETACELFKQM 814 (967)
Q Consensus 758 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 814 (967)
.-++.+...|+++.|+++-+++... .| +..+|..|+.+|...|+++.|+-.++.+
T Consensus 342 ~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 342 IQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3456677889999999999999885 44 4569999999999999999999988876
No 252
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=88.32 E-value=15 Score=33.73 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048794 786 PNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMI 865 (967)
Q Consensus 786 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 865 (967)
++..+....+.++...++ .+++..+.++++ .|+..+....+.++...|.. ++...+..++. +++..+....+
T Consensus 93 ~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGD-ERAVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAA 164 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC-GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCc-HHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHH
Confidence 444444444445544444 334555555543 45555555555555555543 34444444442 34555555556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 048794 866 NGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRA 906 (967)
Q Consensus 866 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 906 (967)
.++.+.|. .++...+..+++ .++..+-.....++...
T Consensus 165 ~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 165 DALGEIGG-ERVRAAMEKLAE---TGTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHHCS-HHHHHHHHHHHH---HCCHHHHHHHHHHHHC-
T ss_pred HHHHHhCc-hhHHHHHHHHHh---CCCHHHHHHHHHHHHhc
Confidence 66666665 455555555553 23444444444444443
No 253
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.87 E-value=26 Score=35.86 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=17.7
Q ss_pred hHHHHHHhcCChhHHHHHHHHHHhhc
Q 048794 546 TLLPGVVKDGQIEDAFRLAKCSIYQI 571 (967)
Q Consensus 546 ~l~~~~~~~~~~~~A~~~~~~~~~~~ 571 (967)
.++..|...|++.+|.+.+.+.....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~ 129 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLREL 129 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 56677777777777777777655543
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.59 E-value=3.4 Score=42.83 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=42.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELK-----LNGLDADTISY 861 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~ 861 (967)
+...++..+...|++++|+..+.+++.. .| +...+..++.+|.+.|+..+|++.|+... +.|+.|++.+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 4445555566666667766666666652 34 35566666666666677777666666543 24666666543
No 255
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.23 E-value=25 Score=34.86 Aligned_cols=190 Identities=14% Similarity=0.054 Sum_probs=103.8
Q ss_pred CChhHHHHHHHHHHHcCCC---CCh-hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHH
Q 048794 31 GGLRRASFALEKMRAAGFV---LNA-YSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTV 106 (967)
Q Consensus 31 ~~~~~a~~~~~~~~~~~~~---~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 106 (967)
++.++.++-++.-++.|.. ... ..+.++..-|+++++|.+|++++-.-. ..+.+.|+...+
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg 74 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSG 74 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchH
Confidence 4455555555555555532 222 456677777888899998888765432 234455666555
Q ss_pred HHHH----HHHHHcCCCCcHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh----CC--CCCCHHHHHHHHHHHHhcCChHH
Q 048794 107 MNLL----EEMERLGLRPNVYTFTICIRILGRAGKIDE-AYRILKRMDD----EG--CGPDVVTYTVLIDALCTAGRLDQ 175 (967)
Q Consensus 107 ~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~ 175 (967)
.++. +-..+.+++++......++..+.....-+. =.++.+++.+ .| ..-+......+...+.+.+++.+
T Consensus 75 ~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~ 154 (336)
T 3lpz_A 75 GDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEA 154 (336)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 5544 444456777777777777777765543221 1222222221 11 23466777788888888888888
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 176 AKEIFLKMKASSHQPDQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADVVTYTIFVDALCKVGNVEEAFSILDLMR 254 (967)
Q Consensus 176 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 254 (967)
|...|- . +..+....+..++.-+...+... +.+...-. .+-.|...+++..|..+++...
T Consensus 155 Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaR-aVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 155 AEKHLV--L--GTKESPEVLARMEYEWYKQDESH--------------TAPLYCAR-AVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHH-HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHH--h--cCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHH-HHHHHHHhCCHHHHHHHHHHHH
Confidence 877762 2 22333345544444333332211 11222222 2333556777777777665544
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.47 E-value=1.8 Score=40.99 Aligned_cols=123 Identities=16% Similarity=0.094 Sum_probs=77.6
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048794 797 GFGKTGDVETACELFKQMIKGGIRP-DLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIE 875 (967)
Q Consensus 797 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 875 (967)
...+.|++++|++....-++. .| |......+...+|-.|+++.|.+.++...+. .|+...-.. .|. +.-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~---~yr---~lI 75 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGAS---QLR---HLV 75 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHH---HHH---HHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHH---HHH---HHH
Confidence 356778899999988888885 45 4667778888888899999999998888774 454332111 111 112
Q ss_pred HHHHHHHHHHHcCCCC----CHHhH-HHHHHHHH--hcCCHHHHHHhhcCCCcCCCCcccc
Q 048794 876 EALSLFDEMKKRGISP----DLYTY-NSLILNLG--RAGMVEEARKLAGGNCFVQPSEFVS 929 (967)
Q Consensus 876 ~A~~~~~~~~~~~~~~----~~~~~-~~l~~~~~--~~g~~~~A~~~~~~~l~~~p~~~~~ 929 (967)
.|+..-..+...+-.| ++.-| ..++.++. ..|+.++|..+-.++++..|..+..
T Consensus 76 ~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~ 136 (273)
T 1zbp_A 76 KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 136 (273)
T ss_dssp HHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCC
Confidence 2233333333322222 22223 34444444 4599999999999998888887774
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.41 E-value=30 Score=34.04 Aligned_cols=26 Identities=23% Similarity=0.060 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048794 822 DLKSYSVLVDCLCMVGRVDDALHYFE 847 (967)
Q Consensus 822 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 847 (967)
+...+..++..|.+.|++.+|..+|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 56778888889999999999888874
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.14 E-value=12 Score=39.37 Aligned_cols=98 Identities=10% Similarity=-0.071 Sum_probs=62.6
Q ss_pred hcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHh---CCCCCCHH--HH
Q 048794 754 CTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPN--CVIYNILINGFGKTGDVETACELFKQMIK---GGIRPDLK--SY 826 (967)
Q Consensus 754 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~p~~~--~~ 826 (967)
.++..++..|.+.|+++.|.+.|.++......+. ...+..++.++...+++..+...++++.. .+..|+.. ..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3566778888888888888888888776422222 23566667777777888888888877653 23233322 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 827 SVLVDCLCMVGRVDDALHYFEELKL 851 (967)
Q Consensus 827 ~~l~~~~~~~g~~~~A~~~~~~~~~ 851 (967)
..-+.++...++|.+|...|-.+..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 2234445567788888877777664
No 259
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.56 E-value=5.8 Score=41.07 Aligned_cols=70 Identities=13% Similarity=0.093 Sum_probs=47.9
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 048794 755 TYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIK-----GGIRPDLKS 825 (967)
Q Consensus 755 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~ 825 (967)
+...++..+...|++++|+..+..+.... +-+...|..++.++...|+..+|++.|+++.+ .|+.|+..+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34455666777778888877777777653 33666777777777778888888877777643 367776543
No 260
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=83.30 E-value=27 Score=31.97 Aligned_cols=170 Identities=15% Similarity=0.112 Sum_probs=89.0
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhcHHHHHH
Q 048794 682 DISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLID 761 (967)
Q Consensus 682 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 761 (967)
+...-...+..+...|. .+++..+.++.. .++.......+.++...++. ++...+.+++. .++..+-...+.
T Consensus 32 ~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~ 103 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD-ERAVEPLIKALK---DEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAV 103 (211)
T ss_dssp SHHHHHHHHHHHHHHCC-GGGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-ccHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHH
Confidence 44333334444444444 234444444443 23554555555555555542 34444444443 344445555556
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048794 762 GLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDD 841 (967)
Q Consensus 762 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 841 (967)
++.+.|+. ++...+.++++ .++..+....+.++...+. .+++..+.++++ .|+..+....+.++...+. .+
T Consensus 104 aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~ 174 (211)
T 3ltm_A 104 ALGQIGDE-RAVEPLIKALK---DEDWFVRIAAAFALGEIGD-ERAVEPLIKALK---DEDGWVRQSAADALGEIGG-ER 174 (211)
T ss_dssp HHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HH
T ss_pred HHHHhCcH-HHHHHHHHHHh---CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hh
Confidence 66666653 34555555554 4566666666666666555 456666666664 4666666666677776665 45
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048794 842 ALHYFEELKLNGLDADTISYNFMINGLGRS 871 (967)
Q Consensus 842 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 871 (967)
+...+..++. .+++.+......++...
T Consensus 175 ~~~~L~~~l~---d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 175 VRAAMEKLAE---TGTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHHHHHH---HCCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHh---CCCHHHHHHHHHHHHhc
Confidence 6666666665 23444444444444433
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.87 E-value=5.5 Score=30.78 Aligned_cols=61 Identities=13% Similarity=0.186 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 048794 419 DEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLH 480 (967)
Q Consensus 419 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 480 (967)
=+..+-++.+...++.|++....+.+.+|.+-+++..|.++++-...+ +.+...+|..+++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 345555666666667777777777777777777777777777776654 2333344554443
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.78 E-value=43 Score=33.15 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048794 821 PDLKSYSVLVDCLCMVGRVDDALHYF 846 (967)
Q Consensus 821 p~~~~~~~l~~~~~~~g~~~~A~~~~ 846 (967)
-+......++..|.+.+++.+|...|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 35677778888888888888888887
No 263
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=81.53 E-value=40 Score=32.63 Aligned_cols=29 Identities=7% Similarity=-0.224 Sum_probs=11.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048794 647 TLEMYNYLIHGLLEVHATEMGLDLFTTMKN 676 (967)
Q Consensus 647 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 676 (967)
+......-+..+...+. .++...+..+++
T Consensus 36 ~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~ 64 (280)
T 1oyz_A 36 NSLKRISSARVLQLRGG-QDAVRLAIEFCS 64 (280)
T ss_dssp SHHHHHHHHHHHHHHCC-HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHccCC-chHHHHHHHHHc
Confidence 33333333444444442 334444444443
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.27 E-value=21 Score=43.37 Aligned_cols=168 Identities=13% Similarity=0.063 Sum_probs=102.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 048794 652 NYLIHGLLEVHATEMGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKS 731 (967)
Q Consensus 652 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 731 (967)
..++..+...+.++-+.++. ... +.+...-..++.++...|++++|..+|+++.. ++..+....
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~-~~~----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~---------- 879 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLI-GWL----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF---------- 879 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHH-HHS----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------
T ss_pred HHHHHHHHHhhhHHHHHHHh-hhc----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------
Confidence 34555566777776665433 222 23444456778888889999999999987643 222221110
Q ss_pred CCHHHHHHHHHHHHhCC--CCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHH
Q 048794 732 NSIDKAMDLFYNLVSGG--FSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNC----VIYNILINGFGKTGDVE 805 (967)
Q Consensus 732 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 805 (967)
..... +..+.... ......-|..++..+.+.|.++.++++-+.+++...+.+. ..|..+...+...|+++
T Consensus 880 ~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye 955 (1139)
T 4fhn_B 880 AVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFD 955 (1139)
T ss_dssp SSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSG
T ss_pred hhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHH
Confidence 00000 11112211 1122345677888899999999999998888764322222 26788888899999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048794 806 TACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDD 841 (967)
Q Consensus 806 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 841 (967)
+|...+..+.... --...+..|+..++..|..++
T Consensus 956 ~Ay~aL~~~pd~~--~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 956 AAHVALMVLSTTP--LKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp GGGHHHHHHHHSS--SCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHhCCCHH--HHHHHHHHHHHHHHhCCChhh
Confidence 9999998887632 234566667666666665443
No 265
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.09 E-value=44 Score=32.82 Aligned_cols=135 Identities=13% Similarity=0.083 Sum_probs=80.0
Q ss_pred ChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHH-
Q 048794 32 GLRRASFALEKMRAAGFVLNA-YSYNGFIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNL- 109 (967)
Q Consensus 32 ~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~- 109 (967)
++++.+.-++.-.+.|..... ..+.++..-|.+++++++|++++..-.. .+.+.|+...+.++
T Consensus 12 ~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 12 KLAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLI 76 (312)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHH
Confidence 556666666666665532222 4566777778888888888887655422 24556666665554
Q ss_pred ---HHHHHHcCCCCcHHHHHHHHHHHHhcCCHH-HHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 048794 110 ---LEEMERLGLRPNVYTFTICIRILGRAGKID-EAYRILKRMD----DEG--CGPDVVTYTVLIDALCTAGRLDQAKEI 179 (967)
Q Consensus 110 ---~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 179 (967)
++-..+.+++++......++..+.....-+ .=.++++++. +.| ...+...+..+...+.+.|++.+|...
T Consensus 77 ~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H 156 (312)
T 2wpv_A 77 FYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERY 156 (312)
T ss_dssp HHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence 444445577777777777776665543211 1122222222 111 123667778888888888888888776
Q ss_pred HH
Q 048794 180 FL 181 (967)
Q Consensus 180 ~~ 181 (967)
|-
T Consensus 157 ~i 158 (312)
T 2wpv_A 157 FM 158 (312)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.17 E-value=14 Score=38.74 Aligned_cols=97 Identities=11% Similarity=0.041 Sum_probs=74.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHH--HH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRPD--LKSYSVLVDCLCMVGRVDDALHYFEELKL---NGLDADTIS--YN 862 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~--~~ 862 (967)
++..++..|.+.|++++|.+.|.++......+. ...+...++++...+++..+...++++.. .+-.++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 678899999999999999999999987533333 56788889999999999999999999863 222333221 22
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 863 FMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
.-+..+...++|.+|.+.|-.+..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 334455678899999999988774
No 267
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.29 E-value=46 Score=40.30 Aligned_cols=142 Identities=11% Similarity=0.063 Sum_probs=72.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-----------------
Q 048794 128 CIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDALCTAGRLDQAKEIFLKMKASSHQP----------------- 190 (967)
Q Consensus 128 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------------- 190 (967)
++..+...|..+-+..+..-+ +.+...-..+..++...|++++|.+.|++.-. ++..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence 344455566666655544332 23444445666777888888888888877521 1111
Q ss_pred ------CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCcH----hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048794 191 ------DQVTYITLLDKFSDCGNIEVVKEFWSQMVADGYAADV----VTYTIFVDALCKVGNVEEAFSILDLMRGEGILP 260 (967)
Q Consensus 191 ------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 260 (967)
-...|..++..+.+.+.++.+.++-...+....+.+. ..|..+.+.+...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 1123444555555556666555555444432211111 1345555556666666666666655544322
Q ss_pred CHHHHHHHHHHHhcCCC
Q 048794 261 NLHTYNTLICGLLRLDR 277 (967)
Q Consensus 261 ~~~~~~~ll~~~~~~~~ 277 (967)
-...+..++..++..+.
T Consensus 970 r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp CHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 23344445544444443
No 268
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=77.35 E-value=8.1 Score=29.90 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 048794 68 CREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERL 116 (967)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (967)
.=++.+-++.+...++.|+..+..+.+++|.+.+++..|.++|+-++..
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3345566666666667777777777777777777777777777777643
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.31 E-value=2.3 Score=40.21 Aligned_cols=112 Identities=16% Similarity=0.027 Sum_probs=73.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH
Q 048794 832 CLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEE 911 (967)
Q Consensus 832 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 911 (967)
.+.+.|..++|+...+..++.. +.+......|.+.++-.|++++|..-++.+.+ +.|+......+...+.++ ...+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~yr~lI~a-E~~R 81 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKA-AQAR 81 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHH-HHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHHHHHHHHH-HHHH
Confidence 4567899999999999988864 55788888899999999999999999999886 567765544443444444 3344
Q ss_pred HHHhhcCCCcCCCCccc-c---ccceeeeccCCCcccccc
Q 048794 912 ARKLAGGNCFVQPSEFV-S---SELQVIYAENPRATSLSH 947 (967)
Q Consensus 912 A~~~~~~~l~~~p~~~~-~---~~l~~~~~~~g~~~~~~~ 947 (967)
+.-+..+..-.-+..+. | ..-+......|+.++|..
T Consensus 82 ~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~ 121 (273)
T 1zbp_A 82 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSE 121 (273)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 44455544433333333 3 234444455666655443
No 270
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.83 E-value=4.4 Score=42.78 Aligned_cols=68 Identities=9% Similarity=0.033 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----H---HhHHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 858 TISYNFMINGLGRSGRIEEALSLFDEMKKRGISPD----L---YTYNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 858 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
...++.+++.|.+.+.++.|..+..+.. +|.. . ..++.+|..+...++|.+|.+++..++...|.+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 3467778888888888999988888874 3322 1 23346677788888999999999988888887654
No 271
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=71.58 E-value=25 Score=28.94 Aligned_cols=60 Identities=13% Similarity=0.217 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 048794 420 EAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTFNTLLH 480 (967)
Q Consensus 420 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 480 (967)
+..+-++.+...++.|++....+.+.+|.+-+++..|.++++-...+ +.+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 45555666667778888888888888888888888888888887765 3444555665554
No 272
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=71.58 E-value=75 Score=30.63 Aligned_cols=17 Identities=6% Similarity=-0.185 Sum_probs=7.2
Q ss_pred CCHHHHHHHHHHHHhcC
Q 048794 821 PDLKSYSVLVDCLCMVG 837 (967)
Q Consensus 821 p~~~~~~~l~~~~~~~g 837 (967)
++..+....+.++...|
T Consensus 204 ~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp SCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 33333344444444444
No 273
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=69.91 E-value=22 Score=30.63 Aligned_cols=33 Identities=12% Similarity=-0.359 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 896 YNSLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 896 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
+..++..+...|+.+||+.++......+|--+.
T Consensus 117 y~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 117 ESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 345566666777777777777777666665444
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.92 E-value=69 Score=28.80 Aligned_cols=54 Identities=19% Similarity=0.081 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048794 803 DVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA 856 (967)
Q Consensus 803 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 856 (967)
+..++..+|.-|...|+--. ...|...+..+...|++.+|..+|+..++.+-.|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35566666666666544444 3445555666666666666666666666554444
No 275
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=63.66 E-value=21 Score=29.35 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=23.2
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 048794 71 ALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEME 114 (967)
Q Consensus 71 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 114 (967)
..+-++.+...++.|+..+..+.+++|-+.+++..|.++|+-++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444444455555555555555555555555555555554
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=61.86 E-value=52 Score=29.58 Aligned_cols=83 Identities=14% Similarity=0.132 Sum_probs=58.2
Q ss_pred HHHHHHHhC-----CCCCChh---cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHH
Q 048794 739 DLFYNLVSG-----GFSPTPC---TYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNC-VIYNILINGFGKTGDVETACE 809 (967)
Q Consensus 739 ~~~~~~~~~-----~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~ 809 (967)
.++++++.. ....|+. .|...++.+ .++...++..+|..+...|+.... ..|...+..+...|++.+|.+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 466666653 1233432 333344433 245577999999999987765544 478888888999999999999
Q ss_pred HHHHHHhCCCCCC
Q 048794 810 LFKQMIKGGIRPD 822 (967)
Q Consensus 810 ~~~~~~~~~~~p~ 822 (967)
+|+..++.+-.|-
T Consensus 137 Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 137 LLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHTTCBSH
T ss_pred HHHHHHHcCCccH
Confidence 9999999777773
No 277
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=57.61 E-value=58 Score=30.66 Aligned_cols=41 Identities=7% Similarity=0.063 Sum_probs=23.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 048794 688 LLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGL 728 (967)
Q Consensus 688 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 728 (967)
.++....+.+++++.+..++++...+.+.+..-.+.+-.+|
T Consensus 36 ~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAY 76 (261)
T 3ubw_A 36 YQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAY 76 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHH
Confidence 34455566677777777777766665555544444444444
No 278
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=53.95 E-value=61 Score=30.29 Aligned_cols=40 Identities=5% Similarity=-0.007 Sum_probs=21.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 048794 689 LLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGL 728 (967)
Q Consensus 689 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 728 (967)
++....+.+++++.+...+++...+.+.+..-.+.+-.+|
T Consensus 10 ~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAY 49 (248)
T 3uzd_A 10 KARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAY 49 (248)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHH
Confidence 3445556666666666666666655444444444444444
No 279
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=50.26 E-value=54 Score=30.39 Aligned_cols=40 Identities=10% Similarity=0.078 Sum_probs=21.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 048794 689 LLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGL 728 (967)
Q Consensus 689 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 728 (967)
++....+.+++++.+..++++...+.+.+..-.+.+-.+|
T Consensus 14 ~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaY 53 (236)
T 3iqu_A 14 KAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAY 53 (236)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHH
Confidence 4445556666666666666666655454444444444444
No 280
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=49.87 E-value=87 Score=24.19 Aligned_cols=51 Identities=16% Similarity=0.088 Sum_probs=25.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 048794 236 ALCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEILG 292 (967)
Q Consensus 236 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 292 (967)
.+...|++++|..+.+... .||...|..|... +.|..+.+...+..+..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC
Confidence 3445556555555444332 3455555544332 4455555555554544443
No 281
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=48.21 E-value=94 Score=24.07 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=22.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 048794 237 LCKVGNVEEAFSILDLMRGEGILPNLHTYNTLICGLLRLDRVEEALEVFNNMEI 290 (967)
Q Consensus 237 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 290 (967)
+...|++++|..+.+... .||...|..|... +.|..+++...+..+..
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 445555555555444332 3455555444332 34444444444444433
No 282
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=46.76 E-value=79 Score=29.85 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=12.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC
Q 048794 653 YLIHGLLEVHATEMGLDLFTTMKNAG 678 (967)
Q Consensus 653 ~l~~~~~~~~~~~~A~~~~~~~~~~~ 678 (967)
.++....+.+++++....++++.+.+
T Consensus 13 ~~AkLaeqaeRyddm~~~mk~v~~~~ 38 (260)
T 1o9d_A 13 YMAKLAEQAERYEEMVEFMEKVSNSL 38 (260)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccC
Confidence 33444444455555555555554433
No 283
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=45.98 E-value=1.8e+02 Score=29.19 Aligned_cols=74 Identities=9% Similarity=0.167 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 048794 405 MNTLIDTLYKADRVDEAWEMFCRMKDMKLAPTVVTYNTLLSGLGKEGQ--VQKAIELFEGMTDHGCFPNTVTFNTLL 479 (967)
Q Consensus 405 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 479 (967)
...++.-|...|+.++|...++++...... .......+..++-+.++ .+...+++..+...|+-+.......+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 355666777788888888888877532111 12333334444433332 345666777777666554444443333
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=45.66 E-value=1.4e+02 Score=25.41 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=24.3
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048794 807 ACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA 856 (967)
Q Consensus 807 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 856 (967)
+.++|.-|...|+--. ...|...+..+...|++.+|..+|+..++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4555555555443333 2334444555555555555555555555443333
No 285
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=45.02 E-value=1.6e+02 Score=27.86 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=10.3
Q ss_pred HHHccCChHHHHHHHHHHHhC
Q 048794 692 GYGKSGRVEELLKLYEEMSFR 712 (967)
Q Consensus 692 ~~~~~g~~~~A~~~~~~~~~~ 712 (967)
...+.+++++.+..++++...
T Consensus 37 LaeqaeRyddmv~~mk~v~~~ 57 (260)
T 2npm_A 37 LAEQAERYDEMAKYMKDVVEA 57 (260)
T ss_dssp HHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhcCHHHHHHHHHHHHhc
Confidence 344445555555555555443
No 286
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=45.00 E-value=38 Score=29.36 Aligned_cols=50 Identities=12% Similarity=0.227 Sum_probs=22.8
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 048794 772 AKKLFEEMLDYGCKPNC-VIYNILINGFGKTGDVETACELFKQMIKGGIRP 821 (967)
Q Consensus 772 A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 821 (967)
+..+|..+...|+-... ..|...+..+...|++.+|.++|+..++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 34444444444333222 234444444445555555555555555444444
No 287
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=44.35 E-value=1.1e+02 Score=23.70 Aligned_cols=49 Identities=8% Similarity=-0.006 Sum_probs=21.0
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048794 97 AGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDE 151 (967)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 151 (967)
+..+|++++|..+.+.. ..||...|.+ -+-++.|--+++...+.++...
T Consensus 49 LmNrG~Yq~Al~l~~~~----c~pdlepw~A--Lce~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGN----PWPALEPWFA--LCEWHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHTTCHHHHHGGGTTC----CCGGGHHHHH--HHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHH--HHHHhcccHHHHHHHHHHHHhC
Confidence 33455555554443322 1344444422 2234445555555555444443
No 288
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=44.15 E-value=1.6e+02 Score=25.52 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048794 807 ACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA 856 (967)
Q Consensus 807 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 856 (967)
+..+|..|...|+--. ...|...+..+...|++.+|..+|+..++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 5555666655544444 3344455555556666666666666655544444
No 289
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=43.98 E-value=61 Score=30.12 Aligned_cols=29 Identities=7% Similarity=0.058 Sum_probs=13.7
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCh
Q 048794 690 LDGYGKSGRVEELLKLYEEMSFRGCKPNT 718 (967)
Q Consensus 690 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 718 (967)
+....+.+++++.+..++++...+.+.+.
T Consensus 12 AklaeqaeRyddm~~~mk~v~~~~~eLt~ 40 (234)
T 2br9_A 12 AKLAEQAERYDEMVESMKKVAGMDVELTV 40 (234)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTTCSCCCH
T ss_pred HHHHHHHhCHHHHHHHHHHHhcccCCCCH
Confidence 33444445555555555555544433333
No 290
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=43.28 E-value=1.1e+02 Score=23.63 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=21.0
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048794 97 AGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRILGRAGKIDEAYRILKRMDDE 151 (967)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 151 (967)
+..+|++++|..+.+... .||...|.++ +-++.|--+++...+.++...
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLAL--CEYRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHH--HHHHHTCHHHHHHHHHHHTTC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHHHHHHHhC
Confidence 334555555544443321 3444444322 233445555555444444433
No 291
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=39.50 E-value=2.3e+02 Score=28.39 Aligned_cols=62 Identities=18% Similarity=0.309 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCC
Q 048794 336 NASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTYNMMMKCYSKVGQ--VDEAVTLLSEMVENGC 398 (967)
Q Consensus 336 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~ 398 (967)
..++.-|...|+.++|...++.+....+ ....+...+..+.-+.++ .+...+++..+...++
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~f-hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcc-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 3456667788888888888888753211 112233333333333222 2445666666666553
No 292
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=37.95 E-value=71 Score=31.22 Aligned_cols=24 Identities=13% Similarity=0.014 Sum_probs=16.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 048794 863 FMINGLGRSGRIEEALSLFDEMKK 886 (967)
Q Consensus 863 ~l~~~~~~~g~~~~A~~~~~~~~~ 886 (967)
.-+....+.+++..|....+++++
T Consensus 212 ~AM~~a~K~KNy~tAa~fArrLLe 235 (325)
T 3mv2_A 212 VAMSQHFKHKNFLQASYFAGEFLK 235 (325)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh
Confidence 334445677777777777777775
No 293
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=35.83 E-value=4.9e+02 Score=28.79 Aligned_cols=21 Identities=14% Similarity=0.083 Sum_probs=13.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 048794 408 LIDTLYKADRVDEAWEMFCRM 428 (967)
Q Consensus 408 l~~~~~~~~~~~~A~~~~~~~ 428 (967)
...++.-.|++|.|+..+-+.
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~ 320 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF 320 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc
Confidence 444555677777777766543
No 294
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.75 E-value=3.7e+02 Score=28.54 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHhcCcHHHHHHHHHHHH
Q 048794 59 IHFILQSGFCREALAVYKRVV 79 (967)
Q Consensus 59 ~~~~~~~~~~~~A~~~~~~~~ 79 (967)
+..+.+++++++|..+-..+.
T Consensus 143 ~i~L~d~k~~~~~~~~~~~~~ 163 (523)
T 4b4t_S 143 QLFLWDSKELEQLVEFNRKVV 163 (523)
T ss_dssp ---------------------
T ss_pred HHHHhccccHHHHHHHHHHHH
Confidence 334566777777777665554
No 295
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=35.10 E-value=5e+02 Score=28.70 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=12.0
Q ss_pred HHHHHhcCCHHHHHHHHHhhc
Q 048794 479 LHCLCKNEEVDLAMKMLYEMT 499 (967)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~ 499 (967)
+--|.++|.+++|.++.+...
T Consensus 159 IyY~LR~G~~~~A~e~~~~~~ 179 (661)
T 2qx5_A 159 IFYLLRAGLIKEALQVLVENK 179 (661)
T ss_dssp HHHHHTTTCHHHHHHHHHHTG
T ss_pred HHHHHhcCCHHHHHHHHHHhh
Confidence 334556666666666665553
No 296
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=34.31 E-value=2.2e+02 Score=24.27 Aligned_cols=52 Identities=15% Similarity=0.327 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 048794 770 EEAKKLFEEMLDYGCKPNC-VIYNILINGFGKTGDVETACELFKQMIKGGIRP 821 (967)
Q Consensus 770 ~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 821 (967)
+++..+|..+...|+-... ..|...+..+...|++.+|.++|+..++.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3466666666665544333 355566666666677777777777666655555
No 297
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=33.94 E-value=81 Score=23.25 Aligned_cols=33 Identities=9% Similarity=0.040 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 048794 34 RRASFALEKMRAAGFVLNAYSYNGFIHFILQSG 66 (967)
Q Consensus 34 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 66 (967)
-.+.++++.+.+.++..+..+....+..+.+.|
T Consensus 34 ~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 34 VSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp BCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 335555555554444434444444444444433
No 298
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=32.55 E-value=57 Score=29.93 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 048794 771 EAKKLFEEMLDYGCKPNC-VIYNILINGFGKTGDVETACELFKQMIKGGIRP 821 (967)
Q Consensus 771 ~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 821 (967)
++..+|..+...|+-... ..|...+..+...|++.+|.++|+..++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 455556655555443332 245555555556666666666666655544444
No 299
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.90 E-value=2.8e+02 Score=25.77 Aligned_cols=89 Identities=10% Similarity=0.033 Sum_probs=42.4
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHc--CCCC----CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 048794 58 FIHFILQSGFCREALAVYKRVVSE--GIKP----SLKTYSALMVAAGKRRNIKTVMNLLEEMERLGLRPNVYTFTICIRI 131 (967)
Q Consensus 58 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (967)
-+.+++...++++|..++++..+. +.++ ........+..-...+.-.-+..+.+++.. ..+.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 345566677788777777765431 1121 111222222222222222333333333322 2344444555566
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 048794 132 LGRAGKIDEAYRILKRMD 149 (967)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~ 149 (967)
+.+.|+-++|.++|=+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 666777777766665443
No 300
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=29.91 E-value=1.5e+02 Score=27.26 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048794 805 ETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDA 856 (967)
Q Consensus 805 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 856 (967)
+++..+|.-|...|+--. ...|...+..+...|++.+|..+|+..++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 466777777777665555 4556666777777788888888877777654455
No 301
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=28.86 E-value=3.6e+02 Score=25.17 Aligned_cols=58 Identities=7% Similarity=0.093 Sum_probs=34.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHH
Q 048794 758 PLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGK-TGDVETACELFKQMI 815 (967)
Q Consensus 758 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~ 815 (967)
.++....+.+++++.....+++.+.+...+..-.+.+..+|-. -|....+++++..+.
T Consensus 9 ~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissie 67 (248)
T 3uzd_A 9 QKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIE 67 (248)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 3456667778888888888777776666665555555555532 233344555554443
No 302
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=28.24 E-value=2.8e+02 Score=25.05 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=9.1
Q ss_pred CHHHHHHHHHHHHhCCCCCC
Q 048794 803 DVETACELFKQMIKGGIRPD 822 (967)
Q Consensus 803 ~~~~A~~~~~~~~~~~~~p~ 822 (967)
+.+.|+-.+-+|++.|..|.
T Consensus 50 DpDAALywLaRMl~~GEDp~ 69 (213)
T 3ctd_A 50 DPDATLYWLANMVEAGEDPN 69 (213)
T ss_dssp CHHHHHHHHHHHHHTTCCHH
T ss_pred CHHHHHHHHHHHHHcCCCHH
Confidence 44444444444444443333
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=27.23 E-value=3.3e+02 Score=25.24 Aligned_cols=88 Identities=13% Similarity=0.150 Sum_probs=51.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc--CCCC----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048794 94 MVAAGKRRNIKTVMNLLEEMERL--GLRP----NVYTFTICIRILGRAGKIDEAYRILKRMDDEGCGPDVVTYTVLIDAL 167 (967)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 167 (967)
++.+....++++|..++++.... +.+. ........++.-.....-.-+..+.+.+.. ..+.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 56788889999999999887643 2221 111122223333332333334444444432 34555666677778
Q ss_pred HhcCChHHHHHHHHHHH
Q 048794 168 CTAGRLDQAKEIFLKMK 184 (967)
Q Consensus 168 ~~~g~~~~A~~~~~~~~ 184 (967)
.+.|.-++|.++|-+..
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 88888888888877654
No 304
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=26.61 E-value=3.5e+02 Score=24.23 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhcHHHHHHHHHcCCC-----HHHHHHHHHHHHHCCCC
Q 048794 732 NSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGR-----LEEAKKLFEEMLDYGCK 785 (967)
Q Consensus 732 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~ 785 (967)
.+.+.|+-++.+|++.| +|.-..-..++.+...-|. ...|...++.....|.+
T Consensus 28 SDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 45556666666666655 4443333344444444332 22333444444444543
No 305
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=26.28 E-value=2.5e+02 Score=23.05 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=14.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 406 NTLIDTLYKADRVDEAWEMFCRMK 429 (967)
Q Consensus 406 ~~l~~~~~~~~~~~~A~~~~~~~~ 429 (967)
..++.-|...|+.++|...++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 345555666666666666666654
No 306
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=26.15 E-value=3.1e+02 Score=29.07 Aligned_cols=78 Identities=10% Similarity=0.028 Sum_probs=61.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048794 790 IYNILINGFGKTGDVETACELFKQMIKGGIRPD-LKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNFMINGL 868 (967)
Q Consensus 790 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 868 (967)
+...|+....-...+..|...|.++.. +.|+ ...++.|+......|+.-+|.-+|-+.+... .|-+.+..+|...+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~--~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHH--hCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHH
Confidence 444566666666788999999999998 5777 5789999999988999999999988888653 67777788787766
Q ss_pred Hh
Q 048794 869 GR 870 (967)
Q Consensus 869 ~~ 870 (967)
.+
T Consensus 231 ~~ 232 (497)
T 1ya0_A 231 SK 232 (497)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 307
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=25.41 E-value=1.9e+02 Score=24.90 Aligned_cols=49 Identities=10% Similarity=-0.030 Sum_probs=21.5
Q ss_pred CcHHHHHHHHHHHHHcCCCC--CHhhHHHHHH-H-----HHccCCHHHHHHHHHHHH
Q 048794 66 GFCREALAVYKRVVSEGIKP--SLKTYSALMV-A-----AGKRRNIKTVMNLLEEME 114 (967)
Q Consensus 66 ~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~ 114 (967)
|+|-+|-++++.+-.....+ ....|..||. . ..+.|+...|..++.+..
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55555555555544433233 2333333333 1 123455555555555554
No 308
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=24.84 E-value=3e+02 Score=29.17 Aligned_cols=79 Identities=18% Similarity=0.034 Sum_probs=63.0
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048794 755 TYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVETACELFKQMIKGGIRPDLKSYSVLVDCLC 834 (967)
Q Consensus 755 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 834 (967)
.+..+++...-...++.|...|.++.... +.+...|+.|+......|+.-+|+-.|-+.+-. ..|-..+..++...+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-CCCChhHHHHHHHHHH
Confidence 44566777777778999999999999863 335569999999998899999999999988875 4677788888877665
Q ss_pred h
Q 048794 835 M 835 (967)
Q Consensus 835 ~ 835 (967)
+
T Consensus 232 ~ 232 (497)
T 1ya0_A 232 K 232 (497)
T ss_dssp H
T ss_pred H
Confidence 4
No 309
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=24.61 E-value=94 Score=21.32 Aligned_cols=35 Identities=14% Similarity=0.080 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHH-HhcCcH
Q 048794 34 RRASFALEKMRAAGFVLNAYSYNGFIHFI-LQSGFC 68 (967)
Q Consensus 34 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 68 (967)
++|+..|.+|++..-.++.-+|...+... ++-..|
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY 38 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRY 38 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCcc
Confidence 45666666666554444555666666555 444433
No 310
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=24.43 E-value=88 Score=26.65 Aligned_cols=35 Identities=11% Similarity=0.012 Sum_probs=16.0
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 048794 32 GLRRASFALEKMRAAGFVLNAYSYNGFIHFILQSG 66 (967)
Q Consensus 32 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 66 (967)
+.-.|.++++.+.+.++..+..+...-+..+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 33445555555555444444444444444444444
No 311
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=23.19 E-value=3.8e+02 Score=24.26 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHcCCCCcH--HH-----HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048794 104 KTVMNLLEEMERLGLRPNV--YT-----FTICIRILGRAGKIDEAYRILKRMDDE 151 (967)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~--~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~ 151 (967)
+.|..+|+.+.+...-++. .. -...+-.|.+.|.+++|.+++++....
T Consensus 89 ESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 89 ESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 5666677666654311111 00 112334566777777777777776654
No 312
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.96 E-value=2.1e+02 Score=24.61 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=30.0
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH------HHhccCCHHHHHHHHHHHHh
Q 048794 764 SKSGRLEEAKKLFEEMLDYGCKP--NCVIYNILIN------GFGKTGDVETACELFKQMIK 816 (967)
Q Consensus 764 ~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~~~~~~A~~~~~~~~~ 816 (967)
...|++-+|-++++.+-.....+ +...|..|+. ...+.||...|..++.+.+.
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33466777777777665543233 2234444433 23466777777777777655
No 313
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.69 E-value=6.6e+02 Score=26.09 Aligned_cols=153 Identities=11% Similarity=0.082 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHh-------cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CcCHhhHHHHHHHHHc
Q 048794 627 KALAAKDLFVKFTEN-------LGVTSTLEMYNYLIHGLLEVHATEMGLDLFTTMKNAGC----APDISTYNLLLDGYGK 695 (967)
Q Consensus 627 ~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~ 695 (967)
..++...++...... .+...+..+...++.. ..|+..+++.+++.+..... .....+...+-.+..+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Q ss_pred c------------------------CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-----HHHHHHHHHHHHh
Q 048794 696 S------------------------GRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNS-----IDKAMDLFYNLVS 746 (967)
Q Consensus 696 ~------------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~ 746 (967)
. ++.+.|+.++.+|+..|..|...+...+..+....|. ...|...++.+..
T Consensus 244 ~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~ 323 (447)
T 3pvs_A 244 RSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTR 323 (447)
T ss_dssp CCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHH
T ss_pred hhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHH
Q ss_pred CCCCCChhcHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 048794 747 GGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLD 781 (967)
Q Consensus 747 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 781 (967)
.|.+.....+...+..++..-+-..+...++.+.+
T Consensus 324 ~g~pe~~~~l~~~~~~la~~pksn~~~~a~~~a~~ 358 (447)
T 3pvs_A 324 VGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALA 358 (447)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
No 314
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=21.14 E-value=1.5e+02 Score=22.45 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 861 YNFMINGLGRSGRIEEALSLFDEMK 885 (967)
Q Consensus 861 ~~~l~~~~~~~g~~~~A~~~~~~~~ 885 (967)
+...++.+.+.|+|++|+++.+++.
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 4456677788888888877776655
No 315
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=20.32 E-value=5e+02 Score=23.81 Aligned_cols=161 Identities=7% Similarity=-0.073 Sum_probs=82.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048794 759 LIDGLSKSGRLEEAKKLFEEMLD----YGCKPNCVIYNILINGFGK-TGDVETACELFKQMIKGGIRPDLKSYSVLVDCL 833 (967)
Q Consensus 759 l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 833 (967)
++....+.+++++.....+++.+ .+...+..-.+.+..+|-. -|....+++++..+.++. ..+. ....++.-|
T Consensus 12 ~AKlaeqaeRyddM~~~mk~v~~~~~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissiEqke-k~~~-~~~~~i~~y 89 (227)
T 2o8p_A 12 RAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDDEERHLLTLCIKHKISDYRTMTSQVLQEQTKQ-LNND-ELVKICSEY 89 (227)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CSCH-HHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH-cCCH-HHHHHHHHH
Confidence 45666777888888888887776 5555565555555555532 234455566665554432 2222 122233322
Q ss_pred Hhc--CCHHHHHHHHHHHHHCCCCCC--H-HHHH-HHHHHH-----HhcCCHHHHHHHHHHHHH---cCCCCCHHhHHHH
Q 048794 834 CMV--GRVDDALHYFEELKLNGLDAD--T-ISYN-FMINGL-----GRSGRIEEALSLFDEMKK---RGISPDLYTYNSL 899 (967)
Q Consensus 834 ~~~--g~~~~A~~~~~~~~~~~~~~~--~-~~~~-~l~~~~-----~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l 899 (967)
... .....-..-.-.+++..+-|. . +.|. +-++.| ...|+.+.|...|+.+.+ ..++|...+...|
T Consensus 90 r~kie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGL 169 (227)
T 2o8p_A 90 VFSLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGF 169 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCCChHHHHH
Confidence 211 011111111112223334443 1 2221 223222 356678888888888762 2366655443333
Q ss_pred HH-----HHHhcCCHHHHHHhhcCCCc
Q 048794 900 IL-----NLGRAGMVEEARKLAGGNCF 921 (967)
Q Consensus 900 ~~-----~~~~~g~~~~A~~~~~~~l~ 921 (967)
+- .|-..++.++|..+.++++.
T Consensus 170 aLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 170 IQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22 33356899999999888865
No 316
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=20.29 E-value=2.2e+02 Score=24.26 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=15.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 048794 406 NTLIDTLYKADRVDEAWEMFCRMK 429 (967)
Q Consensus 406 ~~l~~~~~~~~~~~~A~~~~~~~~ 429 (967)
..++.-|...|+.++|...++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 445555666667777777766654
No 317
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=20.27 E-value=4.3e+02 Score=22.95 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=13.9
Q ss_pred HHHhccCCHHHHHHHHHHHHh
Q 048794 796 NGFGKTGDVETACELFKQMIK 816 (967)
Q Consensus 796 ~~~~~~~~~~~A~~~~~~~~~ 816 (967)
.+|-+.+++.+|+..++.++.
T Consensus 70 LCy~klKdYkkA~~~le~il~ 90 (242)
T 3kae_A 70 LCYKKKKDYKKAIKSLESILE 90 (242)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 355566677777777777764
No 318
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=20.15 E-value=39 Score=24.44 Aligned_cols=31 Identities=16% Similarity=-0.100 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCHHHHHHhhcCCCcCCCCccc
Q 048794 898 SLILNLGRAGMVEEARKLAGGNCFVQPSEFV 928 (967)
Q Consensus 898 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 928 (967)
.++..+...|++++|..++-+++...|+-..
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 4666777777777777777777776665443
Done!