BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048796
(555 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 125/301 (41%), Gaps = 43/301 (14%)
Query: 29 KSCVILDLSRNMISGDISDMQNWEANLEILDLSSNKLSGSLPNLTSQFDRLSTFNIRNNS 88
K+ L L N ++G+I + NL + LS+N+L+G +P + + L+ + NNS
Sbjct: 463 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 522
Query: 89 VTGTLPSLLEISPRLVTLDVSSNQLKGPIPDNFFSSMALTNLNL---------------- 132
+G +P+ L L+ LD+++N G IP F N
Sbjct: 523 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 582
Query: 133 SGNGFSGAIPLRSSHASELLVLPSYPP---------------------MESLDLSGNALT 171
+G + + + +L L + P M LD+S N L+
Sbjct: 583 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 642
Query: 172 GVLPSDIGNMGXXXXXXXXXXXXSGKMPSELSKLGALEYLDLSGNQFKGEIPDKLS--LK 229
G +P +IG+M SG +P E+ L L LDLS N+ G IP +S
Sbjct: 643 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 702
Query: 230 LNEFNVSYNDLSGPIPE--NLRNFPKSSF--HPGNALLIFPDGVPSSATNSQGQNSARGK 285
L E ++S N+LSGPIPE FP + F +PG P PS+A + G+
Sbjct: 703 LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHGR 762
Query: 286 H 286
Sbjct: 763 R 763
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 113/249 (45%), Gaps = 40/249 (16%)
Query: 29 KSCVILDLSRNMISGDISDMQNWEAN-LEILDLSSNKLSGSLP----------------- 70
KS L L+ N +G+I D + + L LDLS N G++P
Sbjct: 266 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 325
Query: 71 NLTSQFDR--------LSTFNIRNNSVTGTLP-SLLEISPRLVTLDVSSNQLKGPIPDNF 121
N + + L ++ N +G LP SL +S L+TLD+SSN GPI N
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 385
Query: 122 FSS--MALTNLNLSGNGFSGAIPLRSSHASELLVLPSYPPMESLDLSGNALTGVLPSDIG 179
+ L L L NGF+G IP S+ SEL+ SL LS N L+G +PS +G
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV---------SLHLSFNYLSGTIPSSLG 436
Query: 180 NMGXXXXXXXXXXXXSGKMPSELSKLGALEYLDLSGNQFKGEIPDKLS--LKLNEFNVSY 237
++ G++P EL + LE L L N GEIP LS LN ++S
Sbjct: 437 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 496
Query: 238 NDLSGPIPE 246
N L+G IP+
Sbjct: 497 NRLTGEIPK 505
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 91/196 (46%), Gaps = 11/196 (5%)
Query: 30 SCVILDLSRNMISGDI--SDMQNWEANLEILDLSSNKLSGSLPNLTSQFDRLSTFNIRNN 87
S + LDLS N SG I + QN + L+ L L +N +G +P S L + ++ N
Sbjct: 366 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 425
Query: 88 SVTGTLPSLLEISPRLVTLDVSSNQLKGPIPDNFFSSMALTNLNLSGNGFSGAIPLRSSH 147
++GT+PS L +L L + N L+G IP L L L N +G IP S+
Sbjct: 426 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 485
Query: 148 ASELLVLPSYPPMESLDLSGNALTGVLPSDIGNMGXXXXXXXXXXXXSGKMPSELSKLGA 207
+ L + LS N LTG +P IG + SG +P+EL +
Sbjct: 486 CTNL---------NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 536
Query: 208 LEYLDLSGNQFKGEIP 223
L +LDL+ N F G IP
Sbjct: 537 LIWLDLNTNLFNGTIP 552
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 104/236 (44%), Gaps = 46/236 (19%)
Query: 31 CV---ILDLSRNMISGDISDMQNWEANLEILDLSSNKLSGSLPNLTSQFDRLSTFNIRNN 87
CV LD+S N S I + + A L+ LD+S NKLSG S L NI +N
Sbjct: 196 CVNLEFLDVSSNNFSTGIPFLGDCSA-LQHLDISGNKLSGDFSRAISTCTELKLLNISSN 254
Query: 88 SVTGTLPSLLEISPRLVTLDVSSNQLKGPIPDNFFSSMA--LTNLNLSGNGFSGAIPLRS 145
G +P L S L L ++ N+ G IPD F S LT L+LSGN F GA+P
Sbjct: 255 QFVGPIPPLPLKS--LQYLSLAENKFTGEIPD-FLSGACDTLTGLDLSGNHFYGAVP--- 308
Query: 146 SHASELLVLPSYPPMESLDLSGNALTGVLPSDIGNMGXXXXXXXXXXXXSGKMPSE-LSK 204
P + G+ SG++P + L K
Sbjct: 309 ---------PFF---------------------GSCSLLESLALSSNNFSGELPMDTLLK 338
Query: 205 LGALEYLDLSGNQFKGEIPD---KLSLKLNEFNVSYNDLSGPIPENLRNFPKSSFH 257
+ L+ LDLS N+F GE+P+ LS L ++S N+ SGPI NL PK++
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 394
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 107/263 (40%), Gaps = 48/263 (18%)
Query: 34 LDLSRNMISGDISDMQNWEANLEILDLSSNKLSGSLPNLTSQFDRLSTFNIRNNSVTGTL 93
LD+S N +SGD S + L++L++SSN+ G +P L L ++ N TG +
Sbjct: 225 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI 282
Query: 94 PSLLE-ISPRLVTLDVSSNQLKGPIPDNFFSSMALTNLNLSGNGFSGAIPLR-------- 144
P L L LD+S N G +P F S L +L LS N FSG +P+
Sbjct: 283 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 342
Query: 145 ------------------SSHASELLVL---------PSYP--------PMESLDLSGNA 169
++ ++ LL L P P ++ L L N
Sbjct: 343 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 402
Query: 170 LTGVLPSDIGNMGXXXXXXXXXXXXSGKMPSELSKLGALEYLDLSGNQFKGEIPDKLSL- 228
TG +P + N SG +PS L L L L L N +GEIP +L
Sbjct: 403 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 462
Query: 229 -KLNEFNVSYNDLSGPIPENLRN 250
L + +NDL+G IP L N
Sbjct: 463 KTLETLILDFNDLTGEIPSGLSN 485
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 61/145 (42%), Gaps = 9/145 (6%)
Query: 32 VILDLSRNMISGDISDMQNWEANLEILDLSSNKLSGSLPNLTSQFDRLSTFNIRNNSVTG 91
V L LS N +SG I + L L L N L G +P L T + N +TG
Sbjct: 418 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 477
Query: 92 TLPSLLEISPRLVTLDVSSNQLKGPIPDNFFSSMALTNLNLSGNGFSGAIPLRSSHASEL 151
+PS L L + +S+N+L G IP L L LS N FSG IP L
Sbjct: 478 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 537
Query: 152 LVLPSYPPMESLDLSGNALTGVLPS 176
+ LDL+ N G +P+
Sbjct: 538 IW---------LDLNTNLFNGTIPA 553
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 48/168 (28%)
Query: 86 NNSVTGTLPSLLEISPRLVTLDVSSNQLKGPIPD--NFFSSMALTNLNLSGNGF------ 137
N SV+G + S L +LD+S N L GP+ + S L LN+S N
Sbjct: 87 NGSVSG-----FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV 141
Query: 138 SGAIPLRSSHASELLVLPSYPPMESLDLSGNALTGVLPSDIGNMGXXXXXXXXXXXXSGK 197
SG + L S +E LDLS N+++G G
Sbjct: 142 SGGLKLNS--------------LEVLDLSANSISGA-------------------NVVGW 168
Query: 198 MPSELSKLGALEYLDLSGNQFKGEIPDKLSLKLNEFNVSYNDLSGPIP 245
+ S+ G L++L +SGN+ G++ + L +VS N+ S IP
Sbjct: 169 VLSD--GCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP 214
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 122/288 (42%), Gaps = 43/288 (14%)
Query: 29 KSCVILDLSRNMISGDISDMQNWEANLEILDLSSNKLSGSLPNLTSQFDRLSTFNIRNNS 88
K+ L L N ++G+I + NL + LS+N+L+G +P + + L+ + NNS
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525
Query: 89 VTGTLPSLLEISPRLVTLDVSSNQLKGPIPDNFFSSMALTNLNL---------------- 132
+G +P+ L L+ LD+++N G IP F N
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 585
Query: 133 SGNGFSGAIPLRSSHASELLVLPSYPP---------------------MESLDLSGNALT 171
+G + + + +L L + P M LD+S N L+
Sbjct: 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645
Query: 172 GVLPSDIGNMGXXXXXXXXXXXXSGKMPSELSKLGALEYLDLSGNQFKGEIPDKLS--LK 229
G +P +IG+M SG +P E+ L L LDLS N+ G IP +S
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705
Query: 230 LNEFNVSYNDLSGPIPE--NLRNFPKSSF--HPGNALLIFPDGVPSSA 273
L E ++S N+LSGPIPE FP + F +PG P PS+A
Sbjct: 706 LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNA 753
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 113/249 (45%), Gaps = 40/249 (16%)
Query: 29 KSCVILDLSRNMISGDISDMQNWEAN-LEILDLSSNKLSGSLP----------------- 70
KS L L+ N +G+I D + + L LDLS N G++P
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328
Query: 71 NLTSQFDR--------LSTFNIRNNSVTGTLP-SLLEISPRLVTLDVSSNQLKGPIPDNF 121
N + + L ++ N +G LP SL +S L+TLD+SSN GPI N
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 122 FSS--MALTNLNLSGNGFSGAIPLRSSHASELLVLPSYPPMESLDLSGNALTGVLPSDIG 179
+ L L L NGF+G IP S+ SEL+ SL LS N L+G +PS +G
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV---------SLHLSFNYLSGTIPSSLG 439
Query: 180 NMGXXXXXXXXXXXXSGKMPSELSKLGALEYLDLSGNQFKGEIPDKLS--LKLNEFNVSY 237
++ G++P EL + LE L L N GEIP LS LN ++S
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499
Query: 238 NDLSGPIPE 246
N L+G IP+
Sbjct: 500 NRLTGEIPK 508
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 91/196 (46%), Gaps = 11/196 (5%)
Query: 30 SCVILDLSRNMISGDI--SDMQNWEANLEILDLSSNKLSGSLPNLTSQFDRLSTFNIRNN 87
S + LDLS N SG I + QN + L+ L L +N +G +P S L + ++ N
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428
Query: 88 SVTGTLPSLLEISPRLVTLDVSSNQLKGPIPDNFFSSMALTNLNLSGNGFSGAIPLRSSH 147
++GT+PS L +L L + N L+G IP L L L N +G IP S+
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Query: 148 ASELLVLPSYPPMESLDLSGNALTGVLPSDIGNMGXXXXXXXXXXXXSGKMPSELSKLGA 207
+ L + LS N LTG +P IG + SG +P+EL +
Sbjct: 489 CTNL---------NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539
Query: 208 LEYLDLSGNQFKGEIP 223
L +LDL+ N F G IP
Sbjct: 540 LIWLDLNTNLFNGTIP 555
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 104/236 (44%), Gaps = 46/236 (19%)
Query: 31 CV---ILDLSRNMISGDISDMQNWEANLEILDLSSNKLSGSLPNLTSQFDRLSTFNIRNN 87
CV LD+S N S I + + A L+ LD+S NKLSG S L NI +N
Sbjct: 199 CVNLEFLDVSSNNFSTGIPFLGDCSA-LQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257
Query: 88 SVTGTLPSLLEISPRLVTLDVSSNQLKGPIPDNFFSSMA--LTNLNLSGNGFSGAIPLRS 145
G +P L S L L ++ N+ G IPD F S LT L+LSGN F GA+P
Sbjct: 258 QFVGPIPPLPLKS--LQYLSLAENKFTGEIPD-FLSGACDTLTGLDLSGNHFYGAVP--- 311
Query: 146 SHASELLVLPSYPPMESLDLSGNALTGVLPSDIGNMGXXXXXXXXXXXXSGKMPSE-LSK 204
P + G+ SG++P + L K
Sbjct: 312 ---------PFF---------------------GSCSLLESLALSSNNFSGELPMDTLLK 341
Query: 205 LGALEYLDLSGNQFKGEIPD---KLSLKLNEFNVSYNDLSGPIPENLRNFPKSSFH 257
+ L+ LDLS N+F GE+P+ LS L ++S N+ SGPI NL PK++
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 107/263 (40%), Gaps = 48/263 (18%)
Query: 34 LDLSRNMISGDISDMQNWEANLEILDLSSNKLSGSLPNLTSQFDRLSTFNIRNNSVTGTL 93
LD+S N +SGD S + L++L++SSN+ G +P L L ++ N TG +
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI 285
Query: 94 PSLLE-ISPRLVTLDVSSNQLKGPIPDNFFSSMALTNLNLSGNGFSGAIPLR-------- 144
P L L LD+S N G +P F S L +L LS N FSG +P+
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345
Query: 145 ------------------SSHASELLVL---------PSYP--------PMESLDLSGNA 169
++ ++ LL L P P ++ L L N
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405
Query: 170 LTGVLPSDIGNMGXXXXXXXXXXXXSGKMPSELSKLGALEYLDLSGNQFKGEIPDKLSL- 228
TG +P + N SG +PS L L L L L N +GEIP +L
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465
Query: 229 -KLNEFNVSYNDLSGPIPENLRN 250
L + +NDL+G IP L N
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSN 488
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 97/228 (42%), Gaps = 15/228 (6%)
Query: 34 LDLSRNMISGDISDMQNWEANLEILDLSSNKLSGSLPNLTSQFDRLSTFNIRNNSVTGTL 93
L L NM+ G+I + LE L L N L+G +P+ S L+ ++ NN +TG +
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506
Query: 94 PSLLEISPRLVTLDVSSNQLKGPIPDNFFSSMALTNLNLSGNGFSGAIPL-----RSSHA 148
P + L L +S+N G IP +L L+L+ N F+G IP A
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566
Query: 149 SELLVLPSYPPMESLDL------SGNAL--TGVLPSDIGNMGXXXXXXXXXXXXSGKMPS 200
+ + Y +++ + +GN L G+ + + G
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626
Query: 201 ELSKLGALEYLDLSGNQFKGEIPDKLSLK--LNEFNVSYNDLSGPIPE 246
G++ +LD+S N G IP ++ L N+ +ND+SG IP+
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 61/145 (42%), Gaps = 9/145 (6%)
Query: 32 VILDLSRNMISGDISDMQNWEANLEILDLSSNKLSGSLPNLTSQFDRLSTFNIRNNSVTG 91
V L LS N +SG I + L L L N L G +P L T + N +TG
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480
Query: 92 TLPSLLEISPRLVTLDVSSNQLKGPIPDNFFSSMALTNLNLSGNGFSGAIPLRSSHASEL 151
+PS L L + +S+N+L G IP L L LS N FSG IP L
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540
Query: 152 LVLPSYPPMESLDLSGNALTGVLPS 176
+ LDL+ N G +P+
Sbjct: 541 IW---------LDLNTNLFNGTIPA 556
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 48/168 (28%)
Query: 86 NNSVTGTLPSLLEISPRLVTLDVSSNQLKGPIPD--NFFSSMALTNLNLSGNGF------ 137
N SV+G + S L +LD+S N L GP+ + S L LN+S N
Sbjct: 90 NGSVSG-----FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV 144
Query: 138 SGAIPLRSSHASELLVLPSYPPMESLDLSGNALTGVLPSDIGNMGXXXXXXXXXXXXSGK 197
SG + L S +E LDLS N+++G G
Sbjct: 145 SGGLKLNS--------------LEVLDLSANSISGA-------------------NVVGW 171
Query: 198 MPSELSKLGALEYLDLSGNQFKGEIPDKLSLKLNEFNVSYNDLSGPIP 245
+ S+ G L++L +SGN+ G++ + L +VS N+ S IP
Sbjct: 172 VLSD--GCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP 217
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 22/210 (10%)
Query: 55 LEILDLSSNKLSGSLPNLTSQFDRLSTFNIRNNSVTGTLPSLLEISPRLVTLDVSSNQLK 114
L L ++ +SG++P+ SQ L T + N+++GTLP + P LV + N++
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 115 GPIPDNFFS-SMALTNLNLSGNGFSGAIPLRSSHASELLVLPSYPPMESLDLSGNALTGV 173
G IPD++ S S T++ +S N +G IP ++ + V DLS N L G
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV----------DLSRNMLEG- 211
Query: 174 LPSDIGNMGXXXXXXXXXXXXSGKMPSELSKLGA---LEYLDLSGNQFKGEIPDKLS-LK 229
D + + +L K+G L LDL N+ G +P L+ LK
Sbjct: 212 ---DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268
Query: 230 -LNEFNVSYNDLSGPIPE--NLRNFPKSSF 256
L+ NVS+N+L G IP+ NL+ F S++
Sbjct: 269 FLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 10/158 (6%)
Query: 99 ISPRLVTLDVSSNQLKGPIPDNFFSSMALTNLNLSGNGFSGAIPLRSSHASELLVLPSYP 158
+S L T D + G + D + + NL+LSG P+ SS L + P
Sbjct: 24 LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS-------LANLP 76
Query: 159 PMESLDLSG-NALTGVLPSDIGNMGXXXXXXXXXXXXSGKMPSELSKLGALEYLDLSGNQ 217
+ L + G N L G +P I + SG +P LS++ L LD S N
Sbjct: 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136
Query: 218 FKGEIPDKLSLKLNEFNVSY--NDLSGPIPENLRNFPK 253
G +P +S N +++ N +SG IP++ +F K
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex
pdb|3F88|B Chain B, Glycogen Synthase Kinase 3beta Inhibitor Complex
Length = 349
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 463 EELSRAPAEVLGRSSHGTLYKATL-DSGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHP 521
+E+S +V+G S G +Y+A L DSG ++ +K +++ K+ +E++ + + H
Sbjct: 18 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KVLQDKRFKNRELQIMRKLDHC 73
Query: 522 NIVPLRAYYWGPREQERL----LLADYI 545
NIV LR +++ E++ + L+ DY+
Sbjct: 74 NIVRLRYFFYSSGEKKDVVYLNLVLDYV 101
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 472 VLGRSSHGTLYKATLDSGHMLTVKWLRVGLVRHKK-EFAKEVKKIGSMRHPNIVPLRAYY 530
+LGR G +YK L G ++ VK L+ + + +F EV+ I H N++ LR +
Sbjct: 37 ILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC 96
Query: 531 WGPREQERLLLADYIQGDSLA 551
P ERLL+ Y+ S+A
Sbjct: 97 MTP--TERLLVYPYMANGSVA 115
>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|1Q5K|B Chain B, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|3I4B|A Chain A, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3I4B|B Chain B, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3L1S|A Chain A, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
pdb|3L1S|B Chain B, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
Length = 414
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 463 EELSRAPAEVLGRSSHGTLYKATL-DSGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHP 521
+E+S +V+G S G +Y+A L DSG ++ +K +++ K+ +E++ + + H
Sbjct: 46 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KVLQDKRFKNRELQIMRKLDHC 101
Query: 522 NIVPLRAYYW--GPREQERL--LLADYI 545
NIV LR +++ G ++ E L+ DY+
Sbjct: 102 NIVRLRYFFYSSGEKKDEVYLNLVLDYV 129
>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1I09|B Chain B, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1J1B|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1B|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1C|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|1J1C|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|2JLD|A Chain A, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|2JLD|B Chain B, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|3M1S|A Chain A, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3M1S|B Chain B, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3PUP|A Chain A, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
pdb|3PUP|B Chain B, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
Length = 420
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 463 EELSRAPAEVLGRSSHGTLYKATL-DSGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHP 521
+E+S +V+G S G +Y+A L DSG ++ +K +++ K+ +E++ + + H
Sbjct: 52 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KVLQDKRFKNRELQIMRKLDHC 107
Query: 522 NIVPLRAYYW--GPREQERL--LLADYI 545
NIV LR +++ G ++ E L+ DY+
Sbjct: 108 NIVRLRYFFYSSGEKKDEVYLNLVLDYV 135
>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
pdb|1R0E|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
Length = 391
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 463 EELSRAPAEVLGRSSHGTLYKATL-DSGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHP 521
+E+S +V+G S G +Y+A L DSG ++ +K +++ K+ +E++ + + H
Sbjct: 23 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KVLQDKRFKNRELQIMRKLDHC 78
Query: 522 NIVPLRAYYW--GPREQERL--LLADYI 545
NIV LR +++ G ++ E L+ DY+
Sbjct: 79 NIVRLRYFFYSSGEKKDEVYLNLVLDYV 106
>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
pdb|3SAY|B Chain B, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
Length = 430
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 463 EELSRAPAEVLGRSSHGTLYKATL-DSGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHP 521
+E+S +V+G S G +Y+A L DSG ++ +K +++ K+ +E++ + + H
Sbjct: 52 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KVLQDKRFKNRELQIMRKLDHC 107
Query: 522 NIVPLRAYYW--GPREQERL--LLADYI 545
NIV LR +++ G ++ E L+ DY+
Sbjct: 108 NIVRLRYFFYSSGEKKDEVYLNLVLDYV 135
>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3D|B Chain B, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3W|A Chain A, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q3W|B Chain B, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q41|A Chain A, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q41|B Chain B, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q4L|A Chain A, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|1Q4L|B Chain B, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|3Q3B|A Chain A, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
pdb|3Q3B|B Chain B, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
Length = 424
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 463 EELSRAPAEVLGRSSHGTLYKATL-DSGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHP 521
+E+S +V+G S G +Y+A L DSG ++ +K +++ K+ +E++ + + H
Sbjct: 56 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KVLQDKRFKNRELQIMRKLDHC 111
Query: 522 NIVPLRAYYW--GPREQERL--LLADYI 545
NIV LR +++ G ++ E L+ DY+
Sbjct: 112 NIVRLRYFFYSSGEKKDEVYLNLVLDYV 139
>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp
pdb|1PYX|B Chain B, Gsk-3 Beta Complexed With Amp-Pnp
pdb|3DU8|A Chain A, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
pdb|3DU8|B Chain B, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
Length = 422
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 463 EELSRAPAEVLGRSSHGTLYKATL-DSGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHP 521
+E+S +V+G S G +Y+A L DSG ++ +K +++ K+ +E++ + + H
Sbjct: 54 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KVLQDKRFKNRELQIMRKLDHC 109
Query: 522 NIVPLRAYYW--GPREQERL--LLADYI 545
NIV LR +++ G ++ E L+ DY+
Sbjct: 110 NIVRLRYFFYSSGEKKDEVYLNLVLDYV 137
>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACC|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACD|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACD|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACG|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACG|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACH|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACH|B Chain B, Gsk3b In Complex With Inhibitor
Length = 465
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 463 EELSRAPAEVLGRSSHGTLYKATL-DSGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHP 521
+E+S +V+G S G +Y+A L DSG ++ +K +++ K+ +E++ + + H
Sbjct: 97 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KVLQDKRFKNRELQIMRKLDHC 152
Query: 522 NIVPLRAYYW--GPREQERL--LLADYI 545
NIV LR +++ G ++ E L+ DY+
Sbjct: 153 NIVRLRYFFYSSGEKKDEVYLNLVLDYV 180
>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRK|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRM|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
pdb|3ZRM|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
Length = 371
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 463 EELSRAPAEVLGRSSHGTLYKATL-DSGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHP 521
+E+S +V+G S G +Y+A L DSG ++ +K +++ K+ +E++ + + H
Sbjct: 30 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KVLQDKRFKNRELQIMRKLDHC 85
Query: 522 NIVPLRAYYW--GPREQERL--LLADYI 545
NIV LR +++ G ++ E L+ DY+
Sbjct: 86 NIVRLRYFFYSSGEKKDEVYLNLVLDYV 113
>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Benzoimidazol Inhibitor
Length = 372
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 463 EELSRAPAEVLGRSSHGTLYKATL-DSGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHP 521
+E+S +V+G S G +Y+A L DSG ++ +K +++ K+ +E++ + + H
Sbjct: 31 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KVLQDKRFKNRELQIMRKLDHC 86
Query: 522 NIVPLRAYYW--GPREQERL--LLADYI 545
NIV LR +++ G ++ E L+ DY+
Sbjct: 87 NIVRLRYFFYSSGEKKDEVYLNLVLDYV 114
>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
pdb|4AFJ|B Chain B, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
Length = 367
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 463 EELSRAPAEVLGRSSHGTLYKATL-DSGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHP 521
+E+S +V+G S G +Y+A L DSG ++ +K +++ K+ +E++ + + H
Sbjct: 26 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KVLQDKRFKNRELQIMRKLDHC 81
Query: 522 NIVPLRAYYW--GPREQERL--LLADYI 545
NIV LR +++ G ++ E L+ DY+
Sbjct: 82 NIVRLRYFFYSSGEKKDEVYLNLVLDYV 109
>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Imidazopyridine Inhibitor
Length = 382
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 463 EELSRAPAEVLGRSSHGTLYKATL-DSGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHP 521
+E+S +V+G S G +Y+A L DSG ++ +K +++ K+ +E++ + + H
Sbjct: 30 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KVLQDKRFKNRELQIMRKLDHC 85
Query: 522 NIVPLRAYYW--GPREQERL--LLADYI 545
NIV LR +++ G ++ E L+ DY+
Sbjct: 86 NIVRLRYFFYSSGEKKDEVYLNLVLDYV 113
>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
pdb|1GNG|B Chain B, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
Length = 378
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 463 EELSRAPAEVLGRSSHGTLYKATL-DSGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHP 521
+E+S +V+G S G +Y+A L DSG ++ +K +++ K+ +E++ + + H
Sbjct: 37 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KVLQDKRFKNRELQIMRKLDHC 92
Query: 522 NIVPLRAYYW--GPREQERL--LLADYI 545
NIV LR +++ G ++ E L+ DY+
Sbjct: 93 NIVRLRYFFYSSGEKKDEVYLNLVLDYV 120
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 472 VLGRSSHGTLYKATLDSGHMLTVKWLRVGLVRHKK-EFAKEVKKIGSMRHPNIVPLRAYY 530
+LGR G +YK L G ++ VK L+ + + +F EV+ I H N++ LR +
Sbjct: 45 ILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTEVEMISMAVHRNLLRLRGFC 104
Query: 531 WGPREQERLLLADYIQGDSLA 551
P ERLL+ Y+ S+A
Sbjct: 105 MTP--TERLLVYPYMANGSVA 123
>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
pdb|2OW3|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
Length = 352
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 463 EELSRAPAEVLGRSSHGTLYKATL-DSGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHP 521
+E+S +V+G S G +Y+A L DSG ++ +K +++ K+ +E++ + + H
Sbjct: 18 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KVLQDKRFKNRELQIMRKLDHC 73
Query: 522 NIVPLRAYYW--GPREQERL--LLADYI 545
NIV LR +++ G ++ E L+ DY+
Sbjct: 74 NIVRLRYFFYSSGEKKDEVYLNLVLDYV 101
>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex
Length = 353
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 463 EELSRAPAEVLGRSSHGTLYKATL-DSGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHP 521
+E+S +V+G S G +Y+A L DSG ++ +K +++ K+ +E++ + + H
Sbjct: 22 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KVLQDKRFKNRELQIMRKLDHC 77
Query: 522 NIVPLRAYYW--GPREQERL--LLADYI 545
NIV LR +++ G ++ E L+ DY+
Sbjct: 78 NIVRLRYFFYSSGEKKDEVYLNLVLDYV 105
>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Inhibitor 7d
Length = 350
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 463 EELSRAPAEVLGRSSHGTLYKATL-DSGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHP 521
+E+S +V+G S G +Y+A L DSG ++ +K +++ K+ +E++ + + H
Sbjct: 18 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KVLQDKRFKNRELQIMRKLDHC 73
Query: 522 NIVPLRAYYW--GPREQERL--LLADYI 545
NIV LR +++ G ++ E L+ DY+
Sbjct: 74 NIVRLRYFFYSSGEKKDEVYLNLVLDYV 101
>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|3SD0|B Chain B, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|4B7T|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Leucettine L4
Length = 350
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 463 EELSRAPAEVLGRSSHGTLYKATL-DSGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHP 521
+E+S +V+G S G +Y+A L DSG ++ +K +++ K+ +E++ + + H
Sbjct: 18 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KVLQDKRFKNRELQIMRKLDHC 73
Query: 522 NIVPLRAYYW--GPREQERL--LLADYI 545
NIV LR +++ G ++ E L+ DY+
Sbjct: 74 NIVRLRYFFYSSGEKKDEVYLNLVLDYV 101
>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
pdb|3F7Z|B Chain B, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
Length = 350
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 463 EELSRAPAEVLGRSSHGTLYKATL-DSGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHP 521
+E+S +V+G S G +Y+A L DSG ++ +K +++ K+ +E++ + + H
Sbjct: 19 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK----KVLQDKRFKNRELQIMRKLDHC 74
Query: 522 NIVPLRAYYW--GPREQERL--LLADYI 545
NIV LR +++ G ++ E L+ DY+
Sbjct: 75 NIVRLRYFFYSSGEKKDEVYLNLVLDYV 102
>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide
Length = 350
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 11/89 (12%)
Query: 463 EELSRAPAEVLGRSSHGTLYKATL-DSGHMLTVKWLRVGLVRHKKEFA-KEVKKIGSMRH 520
+E+S +V+G S G +Y+A L DSG ++ +K + G K F +E++ + + H
Sbjct: 18 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQG-----KAFKNRELQIMRKLDH 72
Query: 521 PNIVPLRAYYW--GPREQERL--LLADYI 545
NIV LR +++ G ++ E L+ DY+
Sbjct: 73 CNIVRLRYFFYSSGEKKDEVYLNLVLDYV 101
>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta.
pdb|1H8F|B Chain B, Glycogen Synthase Kinase 3 Beta
Length = 352
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 11/89 (12%)
Query: 463 EELSRAPAEVLGRSSHGTLYKATL-DSGHMLTVKWLRVGLVRHKKEFA-KEVKKIGSMRH 520
+E+S +V+G S G +Y+A L DSG ++ +K + G K F +E++ + + H
Sbjct: 18 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQG-----KAFKNRELQIMRKLDH 72
Query: 521 PNIVPLRAYYW--GPREQERL--LLADYI 545
NIV LR +++ G ++ E L+ DY+
Sbjct: 73 CNIVRLRYFFYSSGEKKDEVYLNLVLDYV 101
>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With
6-Bromoindirubin-3'-Oxime
Length = 350
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 11/89 (12%)
Query: 463 EELSRAPAEVLGRSSHGTLYKATL-DSGHMLTVKWLRVGLVRHKKEFA-KEVKKIGSMRH 520
+E+S +V+G S G +Y+A L DSG ++ +K + G K F +E++ + + H
Sbjct: 18 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQG-----KAFKNRELQIMRKLDH 72
Query: 521 PNIVPLRAYYW--GPREQERL--LLADYI 545
NIV LR +++ G ++ E L+ DY+
Sbjct: 73 CNIVRLRYFFYSSGEKKDEVYLNLVLDYV 101
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 84/202 (41%), Gaps = 19/202 (9%)
Query: 53 ANLEILDLSSN-KLSGSLPNLTSQFDRLSTFNIRNNSVTGTLPSLLEISPRLVTLDVSSN 111
A LE LDLS N +L P RL T ++ + P L L L + N
Sbjct: 79 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 138
Query: 112 QLKGPIPDNFFSSMA-LTNLNLSGNGFSGAIPLRSSHASELLVLPSYPPMESLD---LSG 167
L+ +PD+ F + LT+L L GN S ++P R ++ + SLD L
Sbjct: 139 ALQA-LPDDTFRDLGNLTHLFLHGNRIS-SVPER-----------AFRGLHSLDRLLLHQ 185
Query: 168 NALTGVLPSDIGNMGXXXXXXXXXXXXSGKMPSELSKLGALEYLDLSGNQFKGEIPDK-L 226
N + V P ++G S L+ L AL+YL L+ N + + + L
Sbjct: 186 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL 245
Query: 227 SLKLNEFNVSYNDLSGPIPENL 248
L +F S +++ +P+ L
Sbjct: 246 WAWLQKFRGSSSEVPCSLPQRL 267
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 84/202 (41%), Gaps = 19/202 (9%)
Query: 53 ANLEILDLSSN-KLSGSLPNLTSQFDRLSTFNIRNNSVTGTLPSLLEISPRLVTLDVSSN 111
A LE LDLS N +L P RL T ++ + P L L L + N
Sbjct: 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139
Query: 112 QLKGPIPDNFFSSMA-LTNLNLSGNGFSGAIPLRSSHASELLVLPSYPPMESLD---LSG 167
L+ +PD+ F + LT+L L GN S ++P R ++ + SLD L
Sbjct: 140 ALQA-LPDDTFRDLGNLTHLFLHGNRIS-SVPER-----------AFRGLHSLDRLLLHQ 186
Query: 168 NALTGVLPSDIGNMGXXXXXXXXXXXXSGKMPSELSKLGALEYLDLSGNQFKGEIPDK-L 226
N + V P ++G S L+ L AL+YL L+ N + + + L
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL 246
Query: 227 SLKLNEFNVSYNDLSGPIPENL 248
L +F S +++ +P+ L
Sbjct: 247 WAWLQKFRGSSSEVPCSLPQRL 268
>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis
Length = 394
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 464 ELSRAPAEVLGRSSHGTLYKATLDSGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHPNI 523
E++ +V+G S G +++A L + +K +++ K+ +E++ + ++HPN+
Sbjct: 39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIK----KVLQDKRFKNRELQIMRIVKHPNV 94
Query: 524 VPLRAYYW--GPREQERLL 540
V L+A+++ G ++ E L
Sbjct: 95 VDLKAFFYSNGDKKDEVFL 113
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 470 AEVLGRSSHGTLYKAT-LDSGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHPNIVPLRA 528
EVLG+ G K T ++G ++ +K L ++ F KEVK + + HPN++
Sbjct: 15 GEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIG 74
Query: 529 YYWGPREQERL-LLADYIQGDSL 550
+ + +RL + +YI+G +L
Sbjct: 75 VLY---KDKRLNFITEYIKGGTL 94
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%)
Query: 53 ANLEILDLSSNKLSGSLPNLTSQFDRLSTFNIRNNSVTGTLPSLLEISPRLVTLDVSSNQ 112
+N+ +L+L+ N+L P +++ +L+ + NS++ P L +I P L L++ N+
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 113 LKGPIPDNFFSSMALTNLNLSGNG 136
L F LT L+L N
Sbjct: 85 LSQISDQTFVFCTNLTELDLMSNS 108
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 34 LDLSRNMISGDISDMQN-WEANLEILDLSSNKLSGSLPNLTSQFDRLSTFNIRNNSVTGT 92
LD+S N ++ D W ++ +L+LSSN L+GS+ ++ ++ NN + +
Sbjct: 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-S 464
Query: 93 LPSLLEISPRLVTLDVSSNQLKGPIPDNFFSSM-ALTNLNLSGNGFSGAIP 142
+P + L L+V+SNQLK +PD F + +L + L N + P
Sbjct: 465 IPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 18/121 (14%)
Query: 34 LDLSRNMISGDISDMQNWE-----ANLEILDLSSNKLSGSLPNLTSQFDRLSTFNIRNNS 88
L L NM+ W+ ++L++L L+ N L+ P + S L ++ +N
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515
Query: 89 VT----GTLPSLLEISPRLVTLDVSSNQLKGPIPDNFFSSMALTNLNLSGNGFSGAIPLR 144
+T LP+ LEI LD+S NQL P PD F S L+ L+++ N F L
Sbjct: 516 LTVLSHNDLPANLEI------LDISRNQLLAPNPDVFVS---LSVLDITHNKFICECELS 566
Query: 145 S 145
+
Sbjct: 567 T 567
>pdb|3FKD|A Chain A, The Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From Porphyromonas Gingivalis
pdb|3FKD|B Chain B, The Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From Porphyromonas Gingivalis
pdb|3FKD|C Chain C, The Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From Porphyromonas Gingivalis
pdb|3FKD|D Chain D, The Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From Porphyromonas Gingivalis
Length = 350
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 452 FFLDAS-LAFTAEELSRAPAEVLGRSSHGTLYKATLDSGHMLTVKWLRVGLVRHKKEFAK 510
F LD S ++FT EE+ R PA++ GR + +Y + H + LR+G + K+F K
Sbjct: 163 FVLDQSYVSFTTEEVIR-PADIKGRKNLVXVYSFS----HAYGIPGLRIGYIVANKDFXK 217
Query: 511 EVKKIGSMRHPNIVPLRA 528
V + N + + A
Sbjct: 218 RVAAFSTPWAVNALAIEA 235
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 473 LGRSSHGTLYKATLD-----SGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHPNIVPLR 527
LG+ + G++ D +G ++ VK L+ H ++F +E++ + S++H NIV +
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 528 AYYWGPREQERLLLADYIQGDSLALHL 554
+ + L+ +Y+ SL +L
Sbjct: 78 GVCYSAGRRNLKLIMEYLPYGSLRDYL 104
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 473 LGRSSHGTLYKATLD-----SGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHPNIVPLR 527
LG+ + G++ D +G ++ VK L+ H ++F +E++ + S++H NIV +
Sbjct: 49 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 108
Query: 528 AYYWGPREQERLLLADYIQGDSLALHL 554
+ + L+ +Y+ SL +L
Sbjct: 109 GVCYSAGRRNLKLIMEYLPYGSLRDYL 135
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 473 LGRSSHGTLYKATLD-----SGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHPNIVPLR 527
LG+ + G++ D +G ++ VK L+ H ++F +E++ + S++H NIV +
Sbjct: 25 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 84
Query: 528 AYYWGPREQERLLLADYIQGDSLALHL 554
+ + L+ +Y+ SL +L
Sbjct: 85 GVCYSAGRRNLKLIMEYLPYGSLRDYL 111
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 473 LGRSSHGTLYKATLD-----SGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHPNIVPLR 527
LG+ + G++ D +G ++ VK L+ H ++F +E++ + S++H NIV +
Sbjct: 21 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 528 AYYWGPREQERLLLADYIQGDSLALHL 554
+ + L+ +Y+ SL +L
Sbjct: 81 GVCYSAGRRNLKLIMEYLPYGSLRDYL 107
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 473 LGRSSHGTLYKATLD-----SGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHPNIVPLR 527
LG+ + G++ D +G ++ VK L+ H ++F +E++ + S++H NIV +
Sbjct: 23 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 82
Query: 528 AYYWGPREQERLLLADYIQGDSLALHL 554
+ + L+ +Y+ SL +L
Sbjct: 83 GVCYSAGRRNLKLIMEYLPYGSLRDYL 109
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 473 LGRSSHGTLYKATLD-----SGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHPNIVPLR 527
LG+ + G++ D +G ++ VK L+ H ++F +E++ + S++H NIV +
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 528 AYYWGPREQERLLLADYIQGDSLALHL 554
+ + L+ +Y+ SL +L
Sbjct: 78 GVCYSAGRRNLKLIMEYLPYGSLRDYL 104
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 473 LGRSSHGTLYKATLD-----SGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHPNIVPLR 527
LG+ + G++ D +G ++ VK L+ H ++F +E++ + S++H NIV +
Sbjct: 24 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 83
Query: 528 AYYWGPREQERLLLADYIQGDSLALHL 554
+ + L+ +Y+ SL +L
Sbjct: 84 GVCYSAGRRNLKLIMEYLPYGSLRDYL 110
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 473 LGRSSHGTLYKATLD-----SGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHPNIVPLR 527
LG+ + G++ D +G ++ VK L+ H ++F +E++ + S++H NIV +
Sbjct: 21 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 528 AYYWGPREQERLLLADYIQGDSLALHL 554
+ + L+ +Y+ SL +L
Sbjct: 81 GVCYSAGRRNLKLIMEYLPYGSLRDYL 107
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 473 LGRSSHGTLYKATLD-----SGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHPNIVPLR 527
LG+ + G++ D +G ++ VK L+ H ++F +E++ + S++H NIV +
Sbjct: 19 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 78
Query: 528 AYYWGPREQERLLLADYIQGDSLALHL 554
+ + L+ +Y+ SL +L
Sbjct: 79 GVCYSAGRRNLKLIMEYLPYGSLRDYL 105
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 473 LGRSSHGTLYKATLD-----SGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHPNIVPLR 527
LG+ + G++ D +G ++ VK L+ H ++F +E++ + S++H NIV +
Sbjct: 36 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 95
Query: 528 AYYWGPREQERLLLADYIQGDSLALHL 554
+ + L+ +Y+ SL +L
Sbjct: 96 GVCYSAGRRNLKLIMEYLPYGSLRDYL 122
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 473 LGRSSHGTLYKATLD-----SGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHPNIVPLR 527
LG+ + G++ D +G ++ VK L+ H ++F +E++ + S++H NIV +
Sbjct: 36 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 95
Query: 528 AYYWGPREQERLLLADYIQGDSLALHL 554
+ + L+ +Y+ SL +L
Sbjct: 96 GVCYSAGRRNLKLIMEYLPYGSLRDYL 122
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 473 LGRSSHGTLYKATLD-----SGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHPNIVPLR 527
LG+ + G++ D +G ++ VK L+ H ++F +E++ + S++H NIV +
Sbjct: 16 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 75
Query: 528 AYYWGPREQERLLLADYIQGDSLALHL 554
+ + L+ +Y+ SL +L
Sbjct: 76 GVCYSAGRRNLKLIMEYLPYGSLRDYL 102
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 473 LGRSSHGTLYKATLD-----SGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHPNIVPLR 527
LG+ + G++ D +G ++ VK L+ H ++F +E++ + S++H NIV +
Sbjct: 22 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 81
Query: 528 AYYWGPREQERLLLADYIQGDSLALHL 554
+ + L+ +Y+ SL +L
Sbjct: 82 GVCYSAGRRNLKLIMEYLPYGSLRDYL 108
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 473 LGRSSHGTLYKATLD-----SGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHPNIVPLR 527
LG+ + G++ D +G ++ VK L+ H ++F +E++ + S++H NIV +
Sbjct: 17 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 76
Query: 528 AYYWGPREQERLLLADYIQGDSLALHL 554
+ + L+ +Y+ SL +L
Sbjct: 77 GVCYSAGRRNLKLIMEYLPYGSLRDYL 103
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 473 LGRSSHGTLYKATLD-----SGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHPNIVPLR 527
LG+ + G++ D +G ++ VK L+ H ++F +E++ + S++H NIV +
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 528 AYYWGPREQERLLLADYIQGDSLALHL 554
+ + L+ +Y+ SL +L
Sbjct: 78 GVCYSAGRRNLKLIMEYLPYGSLRDYL 104
>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|E Chain E, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|F Chain F, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
Length = 303
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 32 VILDLSRNMISGDISDMQNWEANLEILDLSSNKLSGSLPNLTS 74
+ +D SRN+ GD +N +L+IL L S L GS NLTS
Sbjct: 147 IFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTS 189
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 26/132 (19%)
Query: 34 LDLSRNMISGDISDMQNWEANLEILDLSSNKLS--GSLPNLTSQFDRLSTFNIRNNSVT- 90
LD S N+++ + + LE L L N+L + +T+Q L +I NSV+
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 91 -------GTLPSLLEIS---------------PRLVTLDVSSNQLKGPIPDNFFSSMALT 128
SLL ++ PR+ LD+ SN++K IP AL
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQ 447
Query: 129 NLNLSGNGFSGA 140
LN++ N
Sbjct: 448 ELNVASNQLKSV 459
>pdb|3FPQ|A Chain A, Crystal Structure Of The Kinase Domain Of Wnk1
pdb|3FPQ|B Chain B, Crystal Structure Of The Kinase Domain Of Wnk1
Length = 290
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 473 LGRSSHGTLYKATLDSGHMLTVKWLRVGLVR----HKKEFAKEVKKIGSMRHPNIV 524
+GR S T+YK LD+ + V W + + ++ F +E + + ++HPNIV
Sbjct: 34 IGRGSFKTVYKG-LDTETTVEVAWCELQDRKLTKSERQRFKEEAEXLKGLQHPNIV 88
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 473 LGRSSHGTLYKATLD-----SGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHPNIVPLR 527
LG+ + G++ D +G ++ VK L+ H ++F +E++ + S++H NIV +
Sbjct: 21 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 528 AYYWGPREQERLLLADYIQGDSLALHL 554
+ + L+ +++ SL +L
Sbjct: 81 GVCYSAGRRNLKLIMEFLPYGSLREYL 107
>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY4|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY5|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp.
pdb|1ZY5|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp
Length = 303
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 32 VILDLSRNMISGDISDMQNWEANLEILDLSSNKLSGSLPNLTS 74
+ +D SRN+ GD +N +L+IL L S L GS NLTS
Sbjct: 147 IFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTS 189
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%)
Query: 58 LDLSSNKLSGSLPNLTSQFDRLSTFNIRNNSVTGTLPSLLEISPRLVTLDVSSNQLKGPI 117
L+L N+L+G PN + + N + + +L TL++ NQ+ +
Sbjct: 59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118
Query: 118 PDNFFSSMALTNLNLSGNGFS 138
P +F +LT+LNL+ N F+
Sbjct: 119 PGSFEHLNSLTSLNLASNPFN 139
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 32 VILDLSRNMISGDISDMQNWEANLEILDLSSNKLSGSLPNLTSQFDRLSTFNIRNNSVTG 91
V L+L RN ++G + ++++ L L NK+ + +L T N+ +N ++
Sbjct: 57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC 116
Query: 92 TLPSLLEISPRLVTLDVSSN 111
+P E L +L+++SN
Sbjct: 117 VMPGSFEHLNSLTSLNLASN 136
>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYD|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp.
pdb|1ZYD|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp
Length = 303
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 32 VILDLSRNMISGDISDMQNWEANLEILDLSSNKLSGSLPNLTS 74
+ +D SRN+ GD +N +L+IL L S L GS NLTS
Sbjct: 147 IFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTS 189
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 100 SPRLVTLDVSSNQLKGPIPDNFFSSMALTNLNLSGNGFSGA----IP--LRSSHASELLV 153
+P+L TL +S+N L+ D F ++ +L NL LS N + IP ++ + LL
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS 205
Query: 154 LPSYP-PMESLDLSGNALTGV 173
+ P +E LD S N++ V
Sbjct: 206 TLAIPIAVEELDASHNSINVV 226
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 471 EVLGRSSHGTLYKATLDSGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHPNIVPLRAYY 530
EV+GR + G + KA + + +K ++ +K F E++++ + HPNIV L
Sbjct: 15 EVVGRGAFGVVCKAKWRAKD-VAIK--QIESESERKAFIVELRQLSRVNHPNIVKL---- 67
Query: 531 WGPREQERLLLADYIQGDSL 550
+G L+ +Y +G SL
Sbjct: 68 YGACLNPVCLVMEYAEGGSL 87
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 471 EVLGRSSHGTLYKATLDSGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHPNIVPLRAYY 530
EV+GR + G + KA + + +K ++ +K F E++++ + HPNIV L
Sbjct: 14 EVVGRGAFGVVCKAKWRAKD-VAIK--QIESESERKAFIVELRQLSRVNHPNIVKL---- 66
Query: 531 WGPREQERLLLADYIQGDSL 550
+G L+ +Y +G SL
Sbjct: 67 YGACLNPVCLVMEYAEGGSL 86
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 471 EVLGRSSHGTLYKATLDS----GHMLTVKWLRVGLV-RHKKEFAKEVKKIGSMRHPNIVP 525
EV+G G + + L + + +K L+ G R ++EF E +G HPNI+
Sbjct: 22 EVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNIIR 81
Query: 526 L 526
L
Sbjct: 82 L 82
>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole
Inhibitor
Length = 291
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 471 EVLGRSSHGTLYKATLDS----GHMLTVKWLRVGLV-RHKKEFAKEVKKIGSMRHPNIVP 525
EV+G G + + L + + +K L+ G R ++EF E +G HPNI+
Sbjct: 20 EVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNIIR 79
Query: 526 L 526
L
Sbjct: 80 L 80
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 100 SPRLVTLDVSSNQLKGPIPDNFFSSMALTNLNLSGNGFSGA----IP--LRSSHASELLV 153
+P+L TL +S+N L+ D F ++ +L NL LS N + IP ++ + LL
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS 199
Query: 154 LPSYP-PMESLDLSGNALTGV 173
+ P +E LD S N++ V
Sbjct: 200 TLAIPIAVEELDASHNSINVV 220
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 473 LGRSSHG--TLYKATLDSGHMLTVKWLRVGLV--RHKKEFAKEVKKIGSMRHPNIVPLRA 528
+G S G L K+T D G +K + + + + ++E +EV + +M+HPNIV R
Sbjct: 32 IGEGSFGKAILVKSTED-GRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRE 90
Query: 529 YYWGPREQERLLLADYIQGDSL 550
+ ++ DY +G L
Sbjct: 91 SF--EENGSLYIVMDYCEGGDL 110
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 12/116 (10%)
Query: 38 RNMISGDISDMQ---------NWEANLEILDLSSNKLSGS-LPNLTSQFDRLSTFNIRNN 87
RN+I DIS N ++LE+L ++ N + LP++ ++ L+ ++
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Query: 88 SVTGTLPSLLEISPRLVTLDVSSNQLKGPIPDNFFSSM-ALTNLNLSGNGFSGAIP 142
+ P+ L L+++SNQLK +PD F + +L + L N + + P
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 535
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 20/148 (13%)
Query: 33 ILDLSRNMISGDISDMQNWEANLEILDLSSNKLSGSLPNLTSQF-DRLSTFNIRNNSVTG 91
IL LSRN I N ANL L+L N+L+ ++PN + +L +RNN +
Sbjct: 92 ILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIES 150
Query: 92 TLPSLLEISPRLVTLDVSSNQLKGPIPDNFFSSMA-LTNLNLSGNGFSGAIPLRSSHASE 150
P L LD+ + I + F ++ L LNL+
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA--------------MCN 196
Query: 151 LLVLPSYPP---MESLDLSGNALTGVLP 175
L +P+ P ++ LDLSGN L+ + P
Sbjct: 197 LREIPNLTPLIKLDELDLSGNHLSAIRP 224
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 33 ILDLSRNMISGDISDMQNWEANLEILDLSSNKLSGSL 69
IL+L++N IS SD +W +LE+LDL N++ L
Sbjct: 395 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 431
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%)
Query: 53 ANLEILDLSSNKLSGSLPNLTSQFDRLSTFNIRNNSVTGTLPSLLEISPRLVTLDVSSNQ 112
+ L LD+ N +S P L + L N+++N ++ L L + SN
Sbjct: 59 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 118
Query: 113 LKGPIPDNFFSSMALTNLNLSGNGFSGA 140
++ + F L L+LS NG S
Sbjct: 119 IQKIKNNPFVKQKNLITLDLSHNGLSST 146
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 53 ANLEILDLSSNKLSGSLP--NLTSQFDRLSTFNIRNNSVTGTLPSLLEISPRLVTLDVSS 110
N+ +L+L+ N+L LP N T ++ +L++ ++ N+++ P L + P L L++
Sbjct: 35 TNITVLNLTHNQLR-RLPAANFT-RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 92
Query: 111 NQLKGPIPDNFFSSMALTNLNLSGNG 136
N+L F LT L+L N
Sbjct: 93 NELSQLSDKTFAFCTNLTELHLMSNS 118
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 33 ILDLSRNMISGDISDMQNWEANLEILDLSSNKLSGSL 69
IL+L++N IS SD +W +LE+LDL N++ L
Sbjct: 390 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 426
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%)
Query: 53 ANLEILDLSSNKLSGSLPNLTSQFDRLSTFNIRNNSVTGTLPSLLEISPRLVTLDVSSNQ 112
+ L LD+ N +S P L + L N+++N ++ L L + SN
Sbjct: 54 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 113
Query: 113 LKGPIPDNFFSSMALTNLNLSGNGFSGA 140
++ + F L L+LS NG S
Sbjct: 114 IQKIKNNPFVKQKNLITLDLSHNGLSST 141
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 53 ANLEILDLSSNKLSGSLP--NLTSQFDRLSTFNIRNNSVTGTLPSLLEISPRLVTLDVSS 110
N+ +L+L+ N+L LP N T ++ +L++ ++ N+++ P L + P L L++
Sbjct: 30 TNITVLNLTHNQLR-RLPAANFT-RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 87
Query: 111 NQLKGPIPDNFFSSMALTNLNLSGNG 136
N+L F LT L+L N
Sbjct: 88 NELSQLSDKTFAFCTNLTELHLMSNS 113
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 33 ILDLSRNMISGDISDMQNWEANLEILDLSSNKLSGSL 69
IL+L++N IS SD +W +LE+LDL N++ L
Sbjct: 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 53 ANLEILDLSSNKLSGSLP--NLTSQFDRLSTFNIRNNSVTGTLPSLLEISPRLVTLDVSS 110
N+ +L+L+ N+L LP N T ++ +L++ ++ N+++ P L + P L L++
Sbjct: 25 TNITVLNLTHNQLR-RLPAANFT-RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82
Query: 111 NQLKGPIPDNFFSSMALTNLNLSGNG 136
N+L F LT L+L N
Sbjct: 83 NELSQLSDKTFAFCTNLTELHLMSNS 108
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%)
Query: 53 ANLEILDLSSNKLSGSLPNLTSQFDRLSTFNIRNNSVTGTLPSLLEISPRLVTLDVSSNQ 112
+ L LD+ N +S P L + L N+++N ++ L L + SN
Sbjct: 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108
Query: 113 LKGPIPDNFFSSMALTNLNLSGNGFSGA 140
++ + F L L+LS NG S
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSST 136
>pdb|2ZKQ|EE Chain e, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 179
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 15/88 (17%)
Query: 452 FFLDASLAFTAEELSRAPAEVLGRSSHGTLYKATL----DSGHMLTVKWLRVGL-VRHKK 506
F+L ASL E L P + R+ T +KA + +GH VGL V+ K
Sbjct: 4 FYLGASL--KDEVLKIVPVQKQTRAGQRTRFKAFVAIGDHNGH--------VGLGVKCSK 53
Query: 507 EFAKEVKKIGSMRHPNIVPLRAYYWGPR 534
E A ++ + +IVP+R YWG +
Sbjct: 54 EVATAIRGAIILAKLSIVPVRRGYWGNK 81
>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5Q|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
Length = 348
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 475 RSSHGTLYKATLDSGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHPNIVPLRAYYWGPR 534
R+S K SG KW ++ KEV+ + +RHPN + R Y R
Sbjct: 77 RNSEVVAIKKMSYSGKQSNEKW---------QDIIKEVRFLQKLRHPNTIQYRGCYL--R 125
Query: 535 EQERLLLADYIQG---DSLALH 553
E L+ +Y G D L +H
Sbjct: 126 EHTAWLVMEYCLGSASDLLEVH 147
>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure
pdb|2GCD|B Chain B, Tao2 Kinase Domain-Staurosporine Structure
Length = 309
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 475 RSSHGTLYKATLDSGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHPNIVPLRAYYWGPR 534
R+S K SG KW ++ KEV+ + +RHPN + R Y R
Sbjct: 38 RNSEVVAIKKMSYSGKQSNEKW---------QDIIKEVRFLQKLRHPNTIQYRGCYL--R 86
Query: 535 EQERLLLADYIQG---DSLALH 553
E L+ +Y G D L +H
Sbjct: 87 EHTAWLVMEYCLGSASDLLEVH 108
>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site
Inhibitor Showing High Selectivity Within The Janus
Kinase Family
Length = 315
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 473 LGRSSHGTLYKATLD-----SGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHPNIVPLR 527
LG+ + G++ D +G ++ VK L+ +++F +E++ + ++ IV R
Sbjct: 19 LGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYR 78
Query: 528 AYYWGPREQERLLLADYIQGDSL 550
+GP Q L+ +Y+ L
Sbjct: 79 GVSYGPGRQSLRLVMEYLPSGCL 101
>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-1,2,2-trimethyl-propyl)-amide
pdb|4HVG|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-2-hydroxy-1,2-dimethyl-propyl)- Amide
pdb|4HVH|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-2-hydroxy-1,2-dimethyl-propyl
pdb|4HVI|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-1-methyl-2-oxo-2-piperidin-1-yl- Ethyl)-amide
Length = 314
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 473 LGRSSHGTLYKATLD-----SGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHPNIVPLR 527
LG+ + G++ D +G ++ VK L+ +++F +E++ + ++ IV R
Sbjct: 18 LGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYR 77
Query: 528 AYYWGPREQERLLLADYIQGDSL 550
+GP Q L+ +Y+ L
Sbjct: 78 GVSYGPGRQSLRLVMEYLPSGCL 100
>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXL|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 327
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 473 LGRSSHGTLYKATLD-----SGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHPNIVPLR 527
LG+ + G++ D +G ++ VK L+ +++F +E++ + ++ IV R
Sbjct: 31 LGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYR 90
Query: 528 AYYWGPREQERLLLADYIQGDSL 550
+GP Q L+ +Y+ L
Sbjct: 91 GVSYGPGRQSLRLVMEYLPSGCL 113
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 492 LTVKWLRVGLV-RHKKEFAKEVKKIGSMRHPNIVPLRAYYWGPREQERLLLADYIQGDSL 550
+ +K L+VG + +++F E +G HPNI+ L + + +++ +Y++ SL
Sbjct: 76 VAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV--TKSKPVMIVTEYMENGSL 133
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 492 LTVKWLRVGLV-RHKKEFAKEVKKIGSMRHPNIVPLRAYYWGPREQERLLLADYIQGDSL 550
+ +K L+ G R +++F E +G HPNI+ L R + +++ +Y++ SL
Sbjct: 80 VAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVV--TRGRLAMIVTEYMENGSL 137
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 492 LTVKWLRVGLV-RHKKEFAKEVKKIGSMRHPNIVPLRAYYWGPREQERLLLADYIQGDSL 550
+ +K L+VG + +++F E +G HPNI+ L + + +++ +Y++ SL
Sbjct: 76 VAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV--TKSKPVMIVTEYMENGSL 133
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 492 LTVKWLRVGLV-RHKKEFAKEVKKIGSMRHPNIVPLRAYYWGPREQERLLLADYIQGDSL 550
+ +K L+ G R +++F E +G HPNI+ L R + +++ +Y++ SL
Sbjct: 80 VAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVV--TRGRLAMIVTEYMENGSL 137
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 492 LTVKWLRVGLV-RHKKEFAKEVKKIGSMRHPNIVPLRAYYWGPREQERLLLADYIQGDSL 550
+ +K L+VG + +++F E +G HPNI+ L + + +++ +Y++ SL
Sbjct: 76 VAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV--TKSKPVMIVTEYMENGSL 133
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 492 LTVKWLRVGLV-RHKKEFAKEVKKIGSMRHPNIVPLRAYYWGPREQERLLLADYIQGDSL 550
+ +K L+VG + +++F E +G HPNI+ L + + +++ +Y++ SL
Sbjct: 76 VAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV--TKSKPVMIVTEYMENGSL 133
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 492 LTVKWLRVGLV-RHKKEFAKEVKKIGSMRHPNIVPLRAYYWGPREQERLLLADYIQGDSL 550
+ +K L+VG + +++F E +G HPNI+ L + + +++ +Y++ SL
Sbjct: 76 VAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV--TKSKPVMIVTEYMENGSL 133
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 492 LTVKWLRVGLV-RHKKEFAKEVKKIGSMRHPNIVPLRAYYWGPREQERLLLADYIQGDSL 550
+ +K L+VG + +++F E +G HPNI+ L + + +++ +Y++ SL
Sbjct: 76 VAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV--TKSKPVMIVTEYMENGSL 133
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 492 LTVKWLRVGLV-RHKKEFAKEVKKIGSMRHPNIVPLRAYYWGPREQERLLLADYIQGDSL 550
+ +K L+VG + +++F E +G HPNI+ L + + +++ +Y++ SL
Sbjct: 76 VAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV--TKSKPVMIVTEYMENGSL 133
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 492 LTVKWLRVGLV-RHKKEFAKEVKKIGSMRHPNIVPLRAYYWGPREQERLLLADYIQGDSL 550
+ +K L+VG + +++F E +G HPNI+ L + + +++ +Y++ SL
Sbjct: 64 VAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV--TKSKPVMIVTEYMENGSL 121
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 492 LTVKWLRVGLV-RHKKEFAKEVKKIGSMRHPNIVPLRAYYWGPREQERLLLADYIQGDSL 550
+ +K L+VG + +++F E +G HPNI+ L + + +++ +Y++ SL
Sbjct: 47 VAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV--TKSKPVMIVTEYMENGSL 104
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 26/129 (20%)
Query: 34 LDLSRNMISGDISDMQNWEANLEILDLSSNKL---SGSLPNLTSQFD------------- 77
+D+S+N + + W ++ L+LSS ++ +G +P D
Sbjct: 392 IDISKNSFHS-MPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNLNLFSLNL 450
Query: 78 -RLSTFNIRNNSVTGTLP--SLLEISPRLVTLDVSSNQLKGPIPDNFFSSM-ALTNLNLS 133
+L I N + TLP SLL P L+ L +S NQLK +PD F + +L + L
Sbjct: 451 PQLKELYISRNKLM-TLPDASLL---PMLLVLKISRNQLKS-VPDGIFDRLTSLQKIWLH 505
Query: 134 GNGFSGAIP 142
N + + P
Sbjct: 506 TNPWDCSCP 514
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 54 NLEILDLSSNKLSGSLPNLTSQFDRLSTFNIRNNSV--TGTLPSLLEISPRLVTLDVSSN 111
N++++ + ++ +L + L + N+ NN + + S+++ +P L L++S N
Sbjct: 147 NIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 206
Query: 112 QLKGPIPDNFFSSMALTNLNLSGNGFSGAIPLRSSHASELLVLPSYPPMESLD 164
+LK + + L L L GN S +S++ S + +P + LD
Sbjct: 207 ELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA--IRERFPKLLRLD 257
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 492 LTVKWLRVGLV-RHKKEFAKEVKKIGSMRHPNIVPLRAYYWGPREQERLLLADYIQGDSL 550
+ +K L+VG + +++F E +G HPNI+ L + + +++ +Y++ SL
Sbjct: 74 VAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV--TKSKPVMIVTEYMENGSL 131
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 471 EVLGRSSHGTLYKATLDSGHMLTVKWLRVGLVRH--KKEFAKEVKKIGSMRHPNIVPL 526
E +G ++G +YKA G ++ +K +R+ +E+ + + HPNIV L
Sbjct: 27 EKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSL 84
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 471 EVLGRSSHGTLYKATLDSGHMLTVKWLRVGLVRH--KKEFAKEVKKIGSMRHPNIVPL 526
E +G ++G +YKA G ++ +K +R+ +E+ + + HPNIV L
Sbjct: 27 EKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSL 84
>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex
With A Staurosporine Analogue
Length = 290
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 473 LGRSSHGTLYKATLD-----SGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHPNIVPLR 527
LG+ + G++ D +G ++ VK L+ +++F +E++ + ++ IV R
Sbjct: 15 LGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYR 74
Query: 528 AYYWGPREQERLLLADYIQGDSL 550
+GP E L+ +Y+ L
Sbjct: 75 GVSYGPGRPELRLVMEYLPSGCL 97
>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156.
pdb|2X4F|B Chain B, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156
Length = 373
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 468 APAEVLGRSSHGTLYKAT-LDSGHMLTVKWLRVGLVRHKKEFAKEVKKIGSMRHPNIVPL 526
+ E+LG G ++K +G L K ++ ++ K+E E+ + + H N++ L
Sbjct: 92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQL 151
Query: 527 RAYYWGPREQERLLLADYIQGDSL 550
+ + + +L+ +Y+ G L
Sbjct: 152 YDAF--ESKNDIVLVMEYVDGGEL 173
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 492 LTVKWLRVGLV-RHKKEFAKEVKKIGSMRHPNIVPLRAYYWGPREQERLLLADYIQGDSL 550
+ +K L+VG + +++F E +G HPNI+ L + + +++ +Y++ SL
Sbjct: 53 VAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIHLEGVV--TKSKPVMIVTEYMENGSL 110
Query: 551 ALHL 554
L
Sbjct: 111 DTFL 114
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 54 NLEILDLSSNKLSGSLPNLTSQFDRLSTFNIRNNSV--TGTLPSLLEISPRLVTLDVSSN 111
N++++ + ++ +L + L + N+ NN + + S+++ +P L L++S N
Sbjct: 147 NIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 206
Query: 112 QLKGPIPDNFFSSMALTNLNLSGNGFSGAIPLRSSHASELLVLPSYPPMESLD 164
+LK + + L L L GN +S++ S + +P + LD
Sbjct: 207 ELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA--IRERFPKLLRLD 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,191,215
Number of Sequences: 62578
Number of extensions: 529566
Number of successful extensions: 1717
Number of sequences better than 100.0: 152
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 108
Number of HSP's that attempted gapping in prelim test: 1420
Number of HSP's gapped (non-prelim): 258
length of query: 555
length of database: 14,973,337
effective HSP length: 104
effective length of query: 451
effective length of database: 8,465,225
effective search space: 3817816475
effective search space used: 3817816475
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 54 (25.4 bits)