Query 048797
Match_columns 240
No_of_seqs 165 out of 1141
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 13:20:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0622 Ornithine decarboxylas 100.0 7.8E-55 1.7E-59 377.7 20.7 231 1-238 115-423 (448)
2 cd06831 PLPDE_III_ODC_like_AZI 100.0 4.9E-50 1.1E-54 360.4 24.5 233 1-239 72-383 (394)
3 COG0019 LysA Diaminopimelate d 100.0 2.2E-48 4.8E-53 347.7 21.5 234 1-237 88-394 (394)
4 cd06840 PLPDE_III_Bif_AspK_Dap 100.0 2.8E-46 6E-51 334.0 22.7 227 2-236 72-367 (368)
5 cd06836 PLPDE_III_ODC_DapDC_li 100.0 4.3E-46 9.2E-51 334.0 22.1 233 1-237 63-377 (379)
6 cd06830 PLPDE_III_ADC Type III 100.0 8E-44 1.7E-48 322.1 21.2 232 1-236 78-408 (409)
7 PLN02537 diaminopimelate decar 100.0 2.8E-43 6E-48 319.0 22.9 232 2-237 80-385 (410)
8 PRK11165 diaminopimelate decar 100.0 3.7E-43 7.9E-48 318.6 23.1 228 2-237 83-397 (420)
9 TIGR03099 dCO2ase_PEP1 pyridox 100.0 1.2E-42 2.5E-47 313.8 23.1 232 2-236 86-397 (398)
10 cd06843 PLPDE_III_PvsE_like Ty 100.0 1.9E-42 4.1E-47 310.4 23.5 231 2-236 63-376 (377)
11 TIGR01048 lysA diaminopimelate 100.0 1.8E-42 3.8E-47 314.4 23.5 232 2-237 87-395 (417)
12 PRK08961 bifunctional aspartat 100.0 6.1E-42 1.3E-46 333.8 22.5 227 2-236 563-858 (861)
13 cd06828 PLPDE_III_DapDC Type I 100.0 1.5E-41 3.2E-46 304.0 22.8 231 2-236 65-372 (373)
14 cd06839 PLPDE_III_Btrk_like Ty 100.0 1.8E-41 3.9E-46 304.4 22.8 232 2-236 68-381 (382)
15 cd06829 PLPDE_III_CANSDC Type 100.0 8.4E-42 1.8E-46 302.9 17.4 212 11-237 70-345 (346)
16 cd00622 PLPDE_III_ODC Type III 100.0 1.8E-40 3.9E-45 296.1 25.6 229 2-236 62-361 (362)
17 TIGR01047 nspC carboxynorsperm 100.0 1.5E-41 3.3E-46 304.4 18.7 220 2-237 65-359 (380)
18 cd06841 PLPDE_III_MccE_like Ty 100.0 1.8E-40 3.9E-45 297.8 22.2 224 2-237 71-375 (379)
19 cd06810 PLPDE_III_ODC_DapDC_li 100.0 6.7E-40 1.5E-44 292.8 22.8 230 2-235 62-366 (368)
20 cd06842 PLPDE_III_Y4yA_like Ty 100.0 1E-38 2.2E-43 290.0 19.7 223 2-236 74-422 (423)
21 PRK05354 arginine decarboxylas 100.0 1.3E-26 2.7E-31 217.7 23.0 231 1-235 137-560 (634)
22 TIGR01273 speA arginine decarb 99.9 8.5E-25 1.8E-29 205.3 23.3 132 2-138 131-281 (624)
23 PF02784 Orn_Arg_deC_N: Pyrido 99.9 1.8E-26 3.9E-31 196.2 9.1 135 1-138 56-201 (251)
24 PLN02439 arginine decarboxylas 99.9 2.1E-23 4.5E-28 193.8 22.7 230 2-235 73-486 (559)
25 PF00278 Orn_DAP_Arg_deC: Pyri 99.8 6.2E-19 1.3E-23 132.6 5.5 61 177-238 53-116 (116)
26 cd06808 PLPDE_III Type III Pyr 99.7 2.1E-16 4.5E-21 130.4 13.7 125 2-138 52-186 (211)
27 cd00430 PLPDE_III_AR Type III 99.6 2.9E-14 6.3E-19 127.6 17.3 196 2-215 67-332 (367)
28 COG1166 SpeA Arginine decarbox 99.6 1.5E-14 3.2E-19 130.8 14.4 128 8-138 160-304 (652)
29 TIGR00492 alr alanine racemase 99.1 3.2E-09 6.9E-14 95.2 13.5 120 3-138 69-199 (367)
30 cd00635 PLPDE_III_YBL036c_like 99.1 3.6E-09 7.8E-14 88.4 12.8 114 12-138 73-196 (222)
31 cd06819 PLPDE_III_LS_D-TA Type 99.0 1.7E-09 3.8E-14 96.4 9.4 120 3-138 71-210 (358)
32 cd06812 PLPDE_III_DSD_D-TA_lik 99.0 4.4E-09 9.5E-14 94.4 11.5 120 2-138 69-209 (374)
33 PRK13340 alanine racemase; Rev 98.9 2.2E-08 4.8E-13 91.0 13.3 115 2-130 106-231 (406)
34 PRK00053 alr alanine racemase; 98.9 5.5E-08 1.2E-12 87.1 13.6 110 3-124 70-187 (363)
35 cd06811 PLPDE_III_yhfX_like Ty 98.7 7.5E-08 1.6E-12 86.8 10.6 127 2-138 92-232 (382)
36 cd06827 PLPDE_III_AR_proteobac 98.7 1.2E-07 2.6E-12 84.6 11.8 90 3-104 65-161 (354)
37 cd06818 PLPDE_III_cryptic_DSD 98.7 1.4E-07 3E-12 85.1 11.4 112 3-127 67-200 (382)
38 cd06813 PLPDE_III_DSD_D-TA_lik 98.6 2.7E-07 5.7E-12 83.4 11.3 96 3-102 74-184 (388)
39 cd06820 PLPDE_III_LS_D-TA_like 98.6 5.2E-07 1.1E-11 80.4 11.0 120 3-138 67-203 (353)
40 cd06821 PLPDE_III_D-TA Type II 98.4 1.9E-06 4.1E-11 77.0 11.2 120 3-138 72-212 (361)
41 cd06824 PLPDE_III_Yggs_like Py 98.4 5.3E-06 1.2E-10 69.4 12.7 110 16-138 79-197 (224)
42 cd06826 PLPDE_III_AR2 Type III 98.4 4.9E-06 1.1E-10 74.6 13.2 114 3-130 68-192 (365)
43 cd07376 PLPDE_III_DSD_D-TA_lik 98.4 3E-06 6.6E-11 75.3 10.9 119 3-138 56-196 (345)
44 PF01168 Ala_racemase_N: Alani 98.0 4E-05 8.7E-10 63.5 9.1 113 10-138 66-188 (218)
45 TIGR00044 pyridoxal phosphate 97.8 0.00049 1.1E-08 57.8 12.9 108 9-126 74-190 (229)
46 cd06815 PLPDE_III_AR_like_1 Ty 97.3 0.003 6.4E-08 56.5 10.8 87 4-103 67-162 (353)
47 cd06822 PLPDE_III_YBL036c_euk 97.2 0.006 1.3E-07 51.2 11.7 76 45-130 115-193 (227)
48 cd06825 PLPDE_III_VanT Type II 97.2 0.0096 2.1E-07 53.5 13.7 112 4-130 69-189 (368)
49 PRK03646 dadX alanine racemase 97.1 0.012 2.6E-07 52.7 12.3 89 4-104 68-163 (355)
50 cd06817 PLPDE_III_DSD Type III 97.0 0.018 3.8E-07 52.2 13.0 120 4-138 73-219 (389)
51 cd06814 PLPDE_III_DSD_D-TA_lik 96.9 0.012 2.6E-07 53.1 11.2 85 6-102 75-179 (379)
52 COG0325 Predicted enzyme with 96.7 0.054 1.2E-06 45.1 12.4 105 11-127 75-190 (228)
53 COG0787 Alr Alanine racemase [ 96.6 0.19 4.2E-06 45.0 16.1 90 4-104 71-168 (360)
54 PRK11930 putative bifunctional 96.5 0.043 9.3E-07 54.5 13.0 107 4-124 527-645 (822)
55 KOG3157 Proline synthetase co- 94.5 0.27 5.9E-06 40.4 8.0 87 7-103 29-173 (244)
56 COG3457 Predicted amino acid r 91.9 0.51 1.1E-05 41.3 6.3 82 43-138 114-199 (353)
57 PRK09250 fructose-bisphosphate 87.4 13 0.00028 33.2 11.6 96 20-130 93-193 (348)
58 COG1830 FbaB DhnA-type fructos 86.5 14 0.00029 31.8 10.8 93 22-130 47-144 (265)
59 PRK06852 aldolase; Validated 82.2 22 0.00048 31.2 10.6 100 20-130 61-168 (304)
60 TIGR01229 rocF_arginase argina 80.3 19 0.00042 31.3 9.8 98 7-106 163-276 (300)
61 COG3616 Predicted amino acid a 75.4 35 0.00075 30.8 10.0 84 10-104 87-185 (368)
62 cd02931 ER_like_FMN Enoate red 73.5 3.5 7.6E-05 37.3 3.3 59 42-103 213-276 (382)
63 PRK01722 formimidoylglutamase; 71.6 37 0.00081 29.8 9.3 99 7-107 182-297 (320)
64 PRK08227 autoinducer 2 aldolas 70.1 69 0.0015 27.5 10.2 92 22-130 46-141 (264)
65 PF01261 AP_endonuc_2: Xylose 68.4 28 0.00062 27.5 7.4 53 76-130 26-85 (213)
66 PF03054 tRNA_Me_trans: tRNA m 67.5 14 0.0003 33.3 5.6 57 73-138 10-69 (356)
67 cd02803 OYE_like_FMN_family Ol 63.8 4.5 9.7E-05 35.5 1.9 50 42-103 203-252 (327)
68 COG2875 CobM Precorrin-4 methy 61.9 32 0.00069 29.1 6.3 53 73-138 58-110 (254)
69 PF01261 AP_endonuc_2: Xylose 60.3 19 0.0004 28.6 4.8 52 76-130 70-126 (213)
70 KOG0256 1-aminocyclopropane-1- 58.8 76 0.0016 29.2 8.6 98 6-115 143-253 (471)
71 cd02932 OYE_YqiM_FMN Old yello 58.8 7.2 0.00016 34.5 2.3 49 42-102 216-264 (336)
72 PF07485 DUF1529: Domain of Un 58.0 36 0.00079 25.7 5.6 48 71-119 62-121 (123)
73 PRK13773 formimidoylglutamase; 57.1 82 0.0018 27.7 8.7 91 15-107 196-300 (324)
74 TIGR00539 hemN_rel putative ox 56.7 1.1E+02 0.0024 27.2 9.6 47 73-119 132-178 (360)
75 TIGR01227 hutG formimidoylglut 55.6 96 0.0021 27.0 8.8 97 9-107 177-290 (307)
76 cd00405 PRAI Phosphoribosylant 55.2 50 0.0011 26.7 6.6 18 18-35 6-23 (203)
77 cd04734 OYE_like_3_FMN Old yel 55.2 70 0.0015 28.4 7.9 49 43-103 204-253 (343)
78 PRK13776 formimidoylglutamase; 55.0 1E+02 0.0022 27.1 8.8 88 19-108 199-300 (318)
79 cd08068 MPN_BRCC36 Mov34/MPN/P 55.0 16 0.00034 31.0 3.6 35 70-104 62-103 (244)
80 COG0482 TrmU Predicted tRNA(5- 54.8 44 0.00095 30.0 6.5 53 73-138 13-70 (356)
81 PRK09856 fructoselysine 3-epim 54.5 40 0.00086 28.4 6.1 52 78-130 91-143 (275)
82 PRK13210 putative L-xylulose 5 54.1 69 0.0015 27.0 7.5 58 72-130 47-108 (284)
83 PRK13774 formimidoylglutamase; 53.6 1E+02 0.0023 26.9 8.7 87 19-107 194-294 (311)
84 TIGR00542 hxl6Piso_put hexulos 53.3 68 0.0015 27.2 7.4 58 72-130 47-108 (279)
85 PRK01060 endonuclease IV; Prov 53.1 54 0.0012 27.7 6.7 56 74-130 44-103 (281)
86 PRK07379 coproporphyrinogen II 52.4 82 0.0018 28.6 8.1 47 73-119 147-193 (400)
87 PRK13209 L-xylulose 5-phosphat 52.3 90 0.002 26.4 8.0 59 71-130 51-113 (283)
88 cd03174 DRE_TIM_metallolyase D 52.2 72 0.0016 26.6 7.3 46 71-116 105-154 (265)
89 PF12224 Amidoligase_2: Putati 52.0 91 0.002 25.9 7.9 40 76-115 91-136 (252)
90 cd04735 OYE_like_4_FMN Old yel 51.8 38 0.00083 30.2 5.7 43 46-98 214-256 (353)
91 PRK08208 coproporphyrinogen II 49.7 1.4E+02 0.0031 27.3 9.3 47 73-119 173-219 (430)
92 cd02933 OYE_like_FMN Old yello 49.7 19 0.00041 32.0 3.4 47 42-96 214-260 (338)
93 PRK00366 ispG 4-hydroxy-3-meth 49.5 1E+02 0.0022 27.7 7.8 63 51-130 104-174 (360)
94 cd07944 DRE_TIM_HOA_like 4-hyd 49.0 1.6E+02 0.0035 25.1 9.0 13 21-33 85-97 (266)
95 cd00019 AP2Ec AP endonuclease 48.3 37 0.0008 28.8 4.9 52 76-130 84-137 (279)
96 PRK13772 formimidoylglutamase; 48.2 1.6E+02 0.0035 25.8 9.0 87 19-107 198-298 (314)
97 smart00633 Glyco_10 Glycosyl h 48.0 54 0.0012 27.6 5.8 37 78-114 137-175 (254)
98 cd07948 DRE_TIM_HCS Saccharomy 46.5 1.3E+02 0.0029 25.6 8.1 22 71-92 102-127 (262)
99 TIGR03581 EF_0839 conserved hy 46.1 55 0.0012 27.3 5.2 78 6-99 114-211 (236)
100 cd04747 OYE_like_5_FMN Old yel 45.6 71 0.0015 28.7 6.4 45 43-93 207-251 (361)
101 PRK13523 NADPH dehydrogenase N 45.3 65 0.0014 28.6 6.1 45 47-103 207-251 (337)
102 KOG1125 TPR repeat-containing 44.6 17 0.00038 34.4 2.4 68 49-123 454-527 (579)
103 PRK08105 flavodoxin; Provision 44.3 1.5E+02 0.0032 22.9 10.1 101 11-123 5-113 (149)
104 cd07943 DRE_TIM_HOA 4-hydroxy- 43.1 1.3E+02 0.0029 25.4 7.6 32 72-103 164-197 (263)
105 TIGR00433 bioB biotin syntheta 43.0 1.5E+02 0.0033 25.2 8.0 40 73-114 154-193 (296)
106 cd04733 OYE_like_2_FMN Old yel 42.8 53 0.0012 29.0 5.2 49 43-103 212-260 (338)
107 TIGR00612 ispG_gcpE 1-hydroxy- 42.6 1.7E+02 0.0037 26.1 8.1 51 76-130 107-165 (346)
108 PF07745 Glyco_hydro_53: Glyco 42.3 1.1E+02 0.0023 27.3 7.0 61 74-138 55-130 (332)
109 TIGR01212 radical SAM protein, 42.2 90 0.0019 27.2 6.5 43 73-116 159-201 (302)
110 PF00491 Arginase: Arginase fa 42.1 91 0.002 26.5 6.4 100 6-107 143-259 (277)
111 PF09897 DUF2124: Uncharacteri 41.7 23 0.0005 27.6 2.3 28 71-100 94-121 (147)
112 KOG1641 Mitochondrial chaperon 41.2 52 0.0011 24.0 3.9 46 183-230 47-95 (104)
113 cd08067 MPN_2A_DUB Mov34/MPN/P 40.9 52 0.0011 26.7 4.4 33 71-103 59-92 (187)
114 PRK08195 4-hyroxy-2-oxovalerat 40.8 88 0.0019 27.8 6.2 82 1-99 96-197 (337)
115 TIGR00542 hxl6Piso_put hexulos 40.7 1E+02 0.0022 26.1 6.5 52 78-130 95-147 (279)
116 COG3246 Uncharacterized conser 40.5 2.5E+02 0.0055 24.5 9.2 67 49-120 4-74 (298)
117 PRK07094 biotin synthase; Prov 40.3 1.8E+02 0.004 25.2 8.2 45 73-118 161-205 (323)
118 cd08070 MPN_like Mpr1p, Pad1p 40.0 39 0.00085 25.2 3.4 35 70-104 49-84 (128)
119 PRK13210 putative L-xylulose 5 38.4 1.1E+02 0.0024 25.7 6.4 53 77-130 94-147 (284)
120 PF04551 GcpE: GcpE protein; 37.9 2.1E+02 0.0046 25.8 8.0 71 51-130 97-174 (359)
121 PRK05660 HemN family oxidoredu 37.9 1.2E+02 0.0026 27.3 6.7 47 73-119 139-185 (378)
122 PF12195 End_beta_barrel: Beta 37.0 25 0.00054 24.1 1.6 19 203-221 27-45 (83)
123 PRK09856 fructoselysine 3-epim 36.7 1.5E+02 0.0032 24.9 6.9 53 77-130 47-104 (275)
124 PRK08446 coproporphyrinogen II 36.4 3.1E+02 0.0066 24.3 10.2 47 73-119 130-176 (350)
125 PF03618 Kinase-PPPase: Kinase 36.1 20 0.00044 30.6 1.4 61 71-144 187-247 (255)
126 PF01455 HupF_HypC: HupF/HypC 36.0 23 0.0005 23.7 1.4 13 202-214 36-48 (68)
127 COG1082 IolE Sugar phosphate i 36.0 1.7E+02 0.0037 24.3 7.1 59 71-130 39-98 (274)
128 PRK13111 trpA tryptophan synth 35.9 82 0.0018 26.9 5.1 52 2-54 42-96 (258)
129 PRK08599 coproporphyrinogen II 35.8 1.1E+02 0.0025 27.3 6.3 47 73-119 132-178 (377)
130 COG1902 NemA NADH:flavin oxido 35.7 95 0.0021 28.0 5.7 42 43-93 212-254 (363)
131 TIGR00074 hypC_hupF hydrogenas 35.3 28 0.0006 23.9 1.7 13 202-214 34-46 (76)
132 COG2875 CobM Precorrin-4 methy 35.1 27 0.00059 29.4 1.9 49 9-59 29-85 (254)
133 PF12244 DUF3606: Protein of u 35.0 28 0.0006 22.4 1.6 16 71-86 29-44 (57)
134 COG3367 Uncharacterized conser 34.4 57 0.0012 28.9 3.9 58 29-103 51-110 (339)
135 COG4090 Uncharacterized protei 34.3 43 0.00092 25.6 2.7 27 71-100 99-126 (154)
136 PRK10413 hydrogenase 2 accesso 34.1 27 0.00059 24.4 1.5 13 202-214 41-53 (82)
137 TIGR03217 4OH_2_O_val_ald 4-hy 34.1 1.8E+02 0.0039 25.8 7.1 31 72-103 166-200 (333)
138 PRK05799 coproporphyrinogen II 34.0 1.3E+02 0.0029 26.7 6.5 47 73-119 131-177 (374)
139 COG2848 Uncharacterized conser 33.1 1.4E+02 0.003 27.3 6.1 57 74-130 1-68 (445)
140 PRK09997 hydroxypyruvate isome 32.9 1.7E+02 0.0038 24.4 6.7 51 77-130 85-138 (258)
141 smart00518 AP2Ec AP endonuclea 32.8 2.2E+02 0.0047 23.8 7.3 15 21-35 13-27 (273)
142 cd02930 DCR_FMN 2,4-dienoyl-Co 32.6 1.2E+02 0.0026 26.9 5.9 45 42-96 199-243 (353)
143 PRK02048 4-hydroxy-3-methylbut 32.6 2.6E+02 0.0056 27.1 8.1 49 78-130 142-197 (611)
144 PRK13125 trpA tryptophan synth 32.1 53 0.0011 27.6 3.3 92 2-102 33-140 (244)
145 TIGR01211 ELP3 histone acetylt 32.0 1.6E+02 0.0035 28.0 6.7 44 72-116 237-280 (522)
146 COG1441 MenC O-succinylbenzoat 31.8 2.4E+02 0.0052 24.0 6.9 65 14-93 190-260 (321)
147 COG0386 BtuE Glutathione perox 31.6 1.1E+02 0.0024 24.1 4.7 41 48-100 25-67 (162)
148 PF02022 Integrase_Zn: Integra 31.2 20 0.00044 21.3 0.5 16 71-86 18-33 (40)
149 PF11213 DUF3006: Protein of u 30.7 39 0.00084 22.7 1.8 19 202-220 31-50 (71)
150 PRK06740 histidinol-phosphatas 30.6 64 0.0014 28.6 3.7 28 73-100 56-84 (331)
151 PF04402 SIMPL: Protein of unk 30.3 1.8E+02 0.0038 23.2 6.1 58 71-130 88-150 (210)
152 PRK06294 coproporphyrinogen II 30.3 1.7E+02 0.0036 26.2 6.4 47 73-119 135-181 (370)
153 PF00120 Gln-synt_C: Glutamine 30.3 1.1E+02 0.0025 25.8 5.1 52 79-130 71-129 (259)
154 TIGR03234 OH-pyruv-isom hydrox 30.1 1.4E+02 0.0031 24.7 5.7 23 79-101 41-63 (254)
155 PRK05904 coproporphyrinogen II 29.3 1.9E+02 0.0041 25.8 6.5 46 73-118 135-180 (353)
156 PRK10409 hydrogenase assembly 29.2 38 0.00083 24.1 1.6 13 202-214 40-52 (90)
157 PRK05628 coproporphyrinogen II 28.8 1.9E+02 0.0041 25.8 6.5 47 73-119 140-186 (375)
158 PF12643 MazG-like: MazG-like 28.3 1E+02 0.0022 22.2 3.8 44 100-146 28-72 (98)
159 TIGR03234 OH-pyruv-isom hydrox 28.1 2.3E+02 0.0051 23.4 6.6 51 77-130 84-137 (254)
160 PRK07226 fructose-bisphosphate 27.8 3.8E+02 0.0082 22.7 9.8 107 13-137 30-145 (267)
161 TIGR01210 conserved hypothetic 27.6 3.1E+02 0.0067 24.0 7.5 30 73-103 151-180 (313)
162 smart00642 Aamy Alpha-amylase 27.4 76 0.0016 25.0 3.3 24 70-94 64-87 (166)
163 PF06415 iPGM_N: BPG-independe 27.2 2.3E+02 0.0051 23.7 6.2 48 76-123 45-92 (223)
164 PRK13209 L-xylulose 5-phosphat 27.1 1.7E+02 0.0037 24.7 5.7 52 78-130 100-152 (283)
165 TIGR03217 4OH_2_O_val_ald 4-hy 27.0 3.3E+02 0.0071 24.1 7.6 35 78-114 115-149 (333)
166 PRK14665 mnmA tRNA-specific 2- 26.6 2E+02 0.0044 25.8 6.2 53 73-138 15-67 (360)
167 PRK08207 coproporphyrinogen II 26.5 2.4E+02 0.0052 26.5 6.9 47 73-119 301-347 (488)
168 PTZ00372 endonuclease 4-like p 26.4 3.4E+02 0.0074 25.0 7.6 56 74-130 173-232 (413)
169 PF00128 Alpha-amylase: Alpha 26.3 61 0.0013 27.2 2.8 33 69-102 45-79 (316)
170 PRK13347 coproporphyrinogen II 26.2 2.1E+02 0.0046 26.4 6.5 47 73-119 184-230 (453)
171 COG0010 SpeB Arginase/agmatina 25.7 4.5E+02 0.0097 22.9 8.9 96 9-106 169-281 (305)
172 cd08060 MPN_UPF0172 Mov34/MPN/ 25.7 2.1E+02 0.0045 23.1 5.5 41 70-110 46-90 (182)
173 TIGR00333 nrdI ribonucleoside- 25.6 2E+02 0.0043 21.7 5.1 41 71-117 46-87 (125)
174 PF00331 Glyco_hydro_10: Glyco 25.4 1.9E+02 0.004 25.4 5.7 37 77-114 188-226 (320)
175 PF08383 Maf_N: Maf N-terminal 25.3 59 0.0013 18.7 1.6 13 71-83 20-32 (35)
176 PF08032 SpoU_sub_bind: RNA 2' 25.2 1.5E+02 0.0032 19.4 4.0 55 2-56 11-72 (76)
177 PLN02746 hydroxymethylglutaryl 25.1 2.9E+02 0.0063 24.7 6.8 45 71-115 152-204 (347)
178 smart00195 DSPc Dual specifici 24.8 1.6E+02 0.0035 21.7 4.6 80 13-103 8-90 (138)
179 PF12983 DUF3867: Protein of u 24.8 1E+02 0.0022 24.8 3.4 38 71-115 70-107 (186)
180 COG3623 SgaU Putative L-xylulo 24.6 3.4E+02 0.0074 23.1 6.6 21 21-41 21-43 (287)
181 PF11372 DUF3173: Domain of un 24.5 31 0.00068 22.5 0.5 32 71-103 11-42 (59)
182 PRK02261 methylaspartate mutas 24.4 99 0.0022 23.6 3.3 22 82-103 46-67 (137)
183 TIGR00715 precor6x_red precorr 23.9 71 0.0015 27.2 2.7 34 2-35 167-201 (256)
184 PF14083 PGDYG: PGDYG protein 23.9 42 0.0009 24.0 1.0 38 182-226 60-97 (102)
185 PRK05692 hydroxymethylglutaryl 23.9 3.1E+02 0.0067 23.7 6.7 46 71-116 110-163 (287)
186 cd07943 DRE_TIM_HOA 4-hydroxy- 23.9 1E+02 0.0022 26.1 3.7 63 21-95 88-159 (263)
187 TIGR01501 MthylAspMutase methy 23.8 1.3E+02 0.0028 23.0 3.8 24 80-103 42-65 (134)
188 PRK09249 coproporphyrinogen II 23.8 2.5E+02 0.0054 25.9 6.5 47 73-119 183-229 (453)
189 PRK09058 coproporphyrinogen II 23.8 3.9E+02 0.0084 24.7 7.7 47 73-119 195-241 (449)
190 COG2016 Predicted RNA-binding 23.7 64 0.0014 25.6 2.1 28 189-216 88-119 (161)
191 PF03808 Glyco_tran_WecB: Glyc 23.3 1.8E+02 0.0039 22.9 4.8 64 15-94 32-105 (172)
192 TIGR00629 uvde UV damage endon 23.2 5.2E+02 0.011 22.8 8.0 71 51-130 68-147 (312)
193 PF04748 Polysacc_deac_2: Dive 23.1 2.4E+02 0.0051 23.3 5.6 35 71-105 68-102 (213)
194 PRK06256 biotin synthase; Vali 22.5 3.3E+02 0.0071 23.8 6.7 41 73-115 183-223 (336)
195 PRK13775 formimidoylglutamase; 22.5 5.3E+02 0.012 22.6 8.7 89 17-107 202-305 (328)
196 COG1310 Predicted metal-depend 22.5 1.2E+02 0.0026 22.7 3.4 24 82-105 60-84 (134)
197 PRK00694 4-hydroxy-3-methylbut 22.3 5.9E+02 0.013 24.6 8.5 50 77-130 145-201 (606)
198 PRK08255 salicylyl-CoA 5-hydro 22.3 2.1E+02 0.0045 28.5 5.9 47 45-103 616-662 (765)
199 PRK05339 PEP synthetase regula 22.2 73 0.0016 27.5 2.4 29 102-138 217-245 (269)
200 COG0418 PyrC Dihydroorotase [N 22.2 5.6E+02 0.012 22.8 9.7 82 36-127 83-165 (344)
201 COG1725 Predicted transcriptio 22.0 3.2E+02 0.0069 20.6 5.6 59 71-130 44-107 (125)
202 PRK10605 N-ethylmaleimide redu 22.0 2.6E+02 0.0056 25.1 6.0 46 44-97 223-269 (362)
203 PRK07709 fructose-bisphosphate 21.9 3.9E+02 0.0084 23.2 6.8 96 20-130 6-132 (285)
204 cd02072 Glm_B12_BD B12 binding 21.8 1.5E+02 0.0032 22.5 3.8 24 80-103 40-63 (128)
205 TIGR03884 sel_bind_Methan sele 21.8 1.8E+02 0.004 19.8 3.8 30 72-101 23-54 (74)
206 COG0646 MetH Methionine syntha 21.8 4.7E+02 0.01 23.0 7.2 73 19-102 136-232 (311)
207 TIGR00538 hemN oxygen-independ 21.8 2.9E+02 0.0063 25.5 6.5 47 73-119 183-229 (455)
208 PF01113 DapB_N: Dihydrodipico 21.6 29 0.00063 25.8 -0.1 39 13-51 73-119 (124)
209 cd00958 DhnA Class I fructose- 21.5 4.6E+02 0.0099 21.5 10.4 95 21-130 24-123 (235)
210 PLN02284 glutamine synthetase 21.3 2.8E+02 0.0062 24.8 6.1 49 82-130 175-230 (354)
211 PF05853 DUF849: Prokaryotic p 21.3 3.5E+02 0.0076 23.2 6.5 47 72-120 21-72 (272)
212 cd07939 DRE_TIM_NifV Streptomy 21.3 4.9E+02 0.011 21.8 7.5 43 71-115 100-146 (259)
213 TIGR03471 HpnJ hopanoid biosyn 21.2 3.2E+02 0.007 25.2 6.7 45 73-118 319-363 (472)
214 PRK09057 coproporphyrinogen II 21.1 5.9E+02 0.013 22.8 8.2 45 73-118 136-180 (380)
215 TIGR02026 BchE magnesium-proto 21.1 3.1E+02 0.0068 25.6 6.6 46 73-119 319-364 (497)
216 TIGR00587 nfo apurinic endonuc 21.0 3.8E+02 0.0083 22.7 6.7 13 21-33 14-26 (274)
217 TIGR01454 AHBA_synth_RP 3-amin 21.0 1E+02 0.0022 24.6 3.0 6 36-41 157-162 (205)
218 COG0191 Fba Fructose/tagatose 20.7 4.4E+02 0.0095 23.0 6.8 97 21-130 7-130 (286)
219 COG0821 gcpE 1-hydroxy-2-methy 20.6 4.6E+02 0.0099 23.5 6.9 52 77-130 110-167 (361)
220 PF09894 DUF2121: Uncharacteri 20.4 46 0.001 27.1 0.8 23 13-35 38-61 (194)
221 COG1186 PrfB Protein chain rel 20.4 1.3E+02 0.0029 25.4 3.5 38 96-138 3-40 (239)
222 COG1791 Uncharacterized conser 20.3 3.6E+02 0.0078 21.7 5.7 46 118-164 53-111 (181)
223 PF00842 Ala_racemase_C: Alani 20.3 1.3E+02 0.0029 22.6 3.3 34 181-214 59-94 (129)
224 PRK01706 S-adenosylmethionine 20.0 1.9E+02 0.004 21.8 4.0 27 76-102 25-52 (123)
No 1
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.8e-55 Score=377.67 Aligned_cols=231 Identities=35% Similarity=0.560 Sum_probs=206.7
Q ss_pred CcccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc---CHHHHc--cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCC
Q 048797 1 MLNALGVSGKSVSLTVALRNENGLAEALGSNFDYA---SQAEIK--GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGAN 75 (240)
Q Consensus 1 ~al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~---s~~EL~--~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~ 75 (240)
+++.+||+|+||||++|+|+.++|++|.++||.++ |+.||. ++.+|+++++|||++ +++.+.+.++. |||++
T Consensus 115 lvl~~gv~P~riIyanpcK~~s~IkyAa~~gV~~~tfDne~el~kv~~~hP~a~llLrIat-dds~a~~~l~~--KFG~~ 191 (448)
T KOG0622|consen 115 LVLSLGVSPERIIYANPCKQVSQIKYAAKHGVSVMTFDNEEELEKVAKSHPNANLLLRIAT-DDSTATCRLNL--KFGCS 191 (448)
T ss_pred HHHhcCCChHHeEecCCCccHHHHHHHHHcCCeEEeecCHHHHHHHHHhCCCceEEEEEcc-CCCcccccccC--ccCCC
Confidence 36789999999999999999999999999999977 999999 788999999999999 88877777777 99999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc-----------------
Q 048797 76 LAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH----------------- 138 (240)
Q Consensus 76 ~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld----------------- 138 (240)
.+++..+|+.||+++++++|+|||+||.+.+++.|.+|+..++.+|++ +.++|+ .+.+||
T Consensus 192 ~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~Ai~dAr~vfd~-g~e~Gf--~m~~LdiGGGf~g~~~~~~~fe~ 268 (448)
T KOG0622|consen 192 LDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRDAISDARNVFDM-GAELGF--EMDILDIGGGFPGDEGHAVVFEE 268 (448)
T ss_pred HHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHHHHHHHHHHHHH-HHhcCc--eEEEeecCCCCCCccchhhhhhh
Confidence 999999999999999999999999999999999999999999999999 889999 999999
Q ss_pred ---hhHHHHhhhcCCC-------C--eeeeCceEEEEe-----------------------------------Ccee---
Q 048797 139 ---WRRGRADCHFGAG-------P--FPRDSAFTLATR-----------------------------------NCRE--- 168 (240)
Q Consensus 139 ---~i~~~l~~~~~~~-------p--~lva~a~~l~t~-----------------------------------n~~~--- 168 (240)
.|+.+++.+||.. | |+|++|++|++. ||++
T Consensus 269 i~~~In~ald~~Fp~~~v~iiaEpGRf~VasafTLa~nViakk~v~~~~~~~d~~d~~~~~mYy~nDGVYGsfnciL~D~ 348 (448)
T KOG0622|consen 269 IADVINTALDLYFPSGGVDIIAEPGRFFVASAFTLAVNVIAKKEVDAKKITSDDEDDEVTFMYYVNDGVYGSFNCILFDH 348 (448)
T ss_pred HHHHHHHHHHHhCCCCCceEEeccchheeechheeeeeeeeeeeccccccCccccccCceEEEEEccceeeeechhhhcc
Confidence 6889999999972 5 999999999998 2222
Q ss_pred ----eeeccCCCCCCCeeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCeeEEe
Q 048797 169 ----SSACSNRTCTGMIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTCL 238 (240)
Q Consensus 169 ----P~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~~i 238 (240)
|..+.......+...++|||||||+.|++.++. |.+.+||||+|+||||||++++|.||++++|. .+|+
T Consensus 349 ~~~i~~~~~~~~e~e~~~~ssIwGPtcD~lD~i~~~~~lp~l~vGdwLvf~~mGAYT~~~aS~fNgf~~p~-~~y~ 423 (448)
T KOG0622|consen 349 QHPIPLVVKDPSEEEPLYKSSIWGPTCDGLDVIAEDCLLPQLNVGDWLVFENMGAYTMSAASTFNGFQRPK-IYYV 423 (448)
T ss_pred cCCcccccCCCccccceeeeeeecCCcchHHHHHhhccCCCCCccCeEEEccCCccccccccccCCCCCCc-eEEE
Confidence 222222112233678999999999999999998 99999999999999999999999999999996 6665
No 2
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=100.00 E-value=4.9e-50 Score=360.40 Aligned_cols=233 Identities=27% Similarity=0.449 Sum_probs=195.3
Q ss_pred CcccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc---CHHHHc--cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCC
Q 048797 1 MLNALGVSGKSVSLTVALRNENGLAEALGSNFDYA---SQAEIK--GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGAN 75 (240)
Q Consensus 1 ~al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~---s~~EL~--~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~ 75 (240)
+|+++|++|++|+|+||+|++++|++|+++||.++ |++||+ .+..++++|+||||| +...+...++ +|||++
T Consensus 72 ~al~~G~~~~~Iif~gp~K~~~~l~~a~~~Gv~~i~vDS~~El~~i~~~~~~~~v~lRi~~-~~~~~~~~~~--~KFGi~ 148 (394)
T cd06831 72 LVQELGVSPENIIYTNPCKQASQIKYAAKVGVNIMTCDNEIELKKIARNHPNAKLLLHIAT-EDNIGGEEMN--MKFGTT 148 (394)
T ss_pred HHHhcCCCcCCEEEeCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHhCCCCcEEEEEec-cCCCCCCccC--CCCCCC
Confidence 47889999999999999999999999999999753 999999 556688999999999 6433333344 499999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc-----------------
Q 048797 76 LAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH----------------- 138 (240)
Q Consensus 76 ~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld----------------- 138 (240)
++++.++++.+++.+++++|||||+|||+.+++.|.++++.++.+++. ++++|+ ++++||
T Consensus 149 ~~~~~~~l~~~~~~~l~~~Gih~HiGS~~~~~~~~~~a~~~~~~~~~~-~~~~g~--~l~~ldiGGGf~~~~~~~~~~~~ 225 (394)
T cd06831 149 LKNCRHLLECAKELDVQIVGVKFHVSSSCKEYQTYVHALSDARCVFDM-AEEFGF--KMNMLDIGGGFTGSEIQLEEVNH 225 (394)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH-HHHCCC--CCCEEEeCCCcCCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999988 778899 999999
Q ss_pred hhHHHHhhhcCC--------CC--eeeeCceEEEEe------C-c--ee----------ee--------eccC-------
Q 048797 139 WRRGRADCHFGA--------GP--FPRDSAFTLATR------N-C--RE----------SS--------ACSN------- 174 (240)
Q Consensus 139 ~i~~~l~~~~~~--------~p--~lva~a~~l~t~------n-~--~~----------P~--------~~~~------- 174 (240)
.|++.++++++. || |+|++||+|+|+ + . .. |. .+..
T Consensus 226 ~i~~~l~~~~~~~~~~~li~EPGR~lva~ag~lvt~V~~~K~~~~~~~~~~~d~~~~~~~~~~~~~~~~~yg~~~~~~~~ 305 (394)
T cd06831 226 VIRPLLDVYFPEGSGIQIIAEPGSYYVSSAFTLAVNVIAKKAVENDKHLSSVEKNGSDEPAFVYYMNDGVYGSFASKLSE 305 (394)
T ss_pred HHHHHHHHhcCcCCCCEEEEeCChhhhhcceEEEEEEEEEEeeccccccccccccCCCCceeEEEEcCceechhhhhhcc
Confidence 566777777753 25 999999999999 1 0 00 21 1110
Q ss_pred ----------CC-CCCCeeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCeeEEec
Q 048797 175 ----------RT-CTGMIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTCLL 239 (240)
Q Consensus 175 ----------~~-~~~~~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~~i~ 239 (240)
.. ...+..+++|+||+|++.|+|.+++ |++++||||+|.++||||.+|+++||+|++|++++|.+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~v~Gp~C~s~D~l~~~~~Lp~l~~GD~l~i~~~GAY~~s~ss~Fn~~~~p~~v~~~~ 383 (394)
T cd06831 306 KLNTTPEVHKKYKEDEPLFTSSLWGPSCDELDQIVESCLLPELNVGDWLIFDNMGAGSLHEPSTFNDFQRPAIYYMMS 383 (394)
T ss_pred cCcccceeeccCCCCCCceeEEEEeCCCCHHHeecccCcCCCCCCCCEEEECCCCCcccccccCCCCCCCCcEEEEEC
Confidence 00 0123457999999999999999988 89999999999999999999999999999999888763
No 3
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-48 Score=347.69 Aligned_cols=234 Identities=26% Similarity=0.310 Sum_probs=191.6
Q ss_pred CcccCCCCCCcEEEcCCCCCHHHHHHHHHCCCC-cc--CHHHHc--cccCCC--CcEEEEEeeCCCC---CCcccCCC-C
Q 048797 1 MLNALGVSGKSVSLTVALRNENGLAEALGSNFD-YA--SQAEIK--GKWHPR--CDLLIRIKALDDC---KAVCPQAQ-D 69 (240)
Q Consensus 1 ~al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~-~~--s~~EL~--~~~~~~--~~v~lRi~~~~~~---~~~~~~~~-~ 69 (240)
+|+++|++|++|+|+||+|+++||++|+++|+. ++ |++||+ .+..++ ++|+||||| +.. +..+.++. .
T Consensus 88 ~al~aG~~~~~I~f~g~~ks~~ei~~a~e~gi~~i~vdS~~El~~l~~~a~~~~~~v~lRInP-~~~~~th~~~~tg~~~ 166 (394)
T COG0019 88 LALAAGFPPERIVFSGPAKSEEEIAFALELGIKLINVDSEEELERLSAIAPGLVARVSLRINP-GVSAGTHEYIATGGKS 166 (394)
T ss_pred HHHHcCCChhhEEECCCCCCHHHHHHHHHcCCcEEEeCCHHHHHHHHHhccccCceEEEEECC-CCCCccCccccCCccc
Confidence 478899999999999999999999999999998 44 999999 455554 899999999 632 33344443 5
Q ss_pred CCCCCCHHHHHHHHHHHHh-CCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc----------
Q 048797 70 SKCGANLAEIGALLEAALA-SQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH---------- 138 (240)
Q Consensus 70 skFG~~~~~~~~~l~~a~~-~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld---------- 138 (240)
||||++++++.++++.+++ .++++.|||||+|||+.|.+.|.++++.+.++++++.++.|+ ++++||
T Consensus 167 sKFG~~~~~a~~~~~~~~~~~~l~~~Glh~HiGSq~~d~~~~~~a~~~~~~~~~~~~~~~g~--~l~~inlGGG~gi~Y~ 244 (394)
T COG0019 167 SKFGISPEEALDVLERAAKLLGLELVGLHFHIGSQITDLDPFEEALAKVEELFGRLAEELGI--QLEWLNLGGGLGITYE 244 (394)
T ss_pred cccCCCHHHHHHHHHHHHhcCCCceEEEEEeecCCCCCcHHHHHHHHHHHHHHHHHHHhhCC--CceEEEecCCcCcCCC
Confidence 7999999999898887765 489999999999999999999999999999999997788899 999999
Q ss_pred ---------hhHHHHhhhcCC---------CC--eeeeCceEEEEe------C----c---------ee-eeeccC----
Q 048797 139 ---------WRRGRADCHFGA---------GP--FPRDSAFTLATR------N----C---------RE-SSACSN---- 174 (240)
Q Consensus 139 ---------~i~~~l~~~~~~---------~p--~lva~a~~l~t~------n----~---------~~-P~~~~~---- 174 (240)
.+.+.+.+.+.. || ++|++||+|+|+ + + .+ |.++..
T Consensus 245 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~EPGR~iv~~aG~Lvt~V~~~k~~~~~~~v~vD~gm~~~~rpaly~a~~~~ 324 (394)
T COG0019 245 DEYDPPDLAAYAKALKEAFGEYAEDVELILEPGRAIVANAGVLVTEVLDVKENGERNFVIVDGGMNDLMRPALYGAYHHI 324 (394)
T ss_pred CCCCCcCHHHHHHHHHHHHhhccCCCeEEEccchhhhhcceeEEEEEEEEEEecCceEEEEechhccCcCHHHcCCcccc
Confidence 244455544442 25 999999999999 1 1 11 433321
Q ss_pred ---CC-CCCCeeeEEEeccCcCCCcccccCC--CC-CCCCCEEEEcCCCccccccCCCCCCCCCCCeeEE
Q 048797 175 ---RT-CTGMIYNSTVFGPTLDAYDKLFTGH--PE-LQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTC 237 (240)
Q Consensus 175 ---~~-~~~~~~~~~i~G~~C~~~D~l~~~~--p~-l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~~ 237 (240)
.. ...+...++|+||+|+++|+|++++ |+ +++||+|+|.++||||++|+|+||++++|++|++
T Consensus 325 ~~~~~~~~~~~~~~~v~G~~CesgD~~~~d~~lp~~~~~GD~l~i~~aGAY~~sm~s~yN~~~~~~ev~v 394 (394)
T COG0019 325 RLNRTDEDAEREEYDVVGPTCESGDVLARDRALPEPLKVGDLLVILDAGAYGASMSSNYNGRPRPAEVLV 394 (394)
T ss_pred ccccccCCCCeEEEEEECCCcCCCCeeeeeeeCCCCCCCCCEEEEcccchhhhhhhccccCCCCCceeeC
Confidence 11 1133578999999999999999887 85 6699999999999999999999999999997753
No 4
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=100.00 E-value=2.8e-46 Score=333.97 Aligned_cols=227 Identities=17% Similarity=0.178 Sum_probs=179.6
Q ss_pred cccC--CCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc--cccCCCCcEEEEEeeCCCC-C--CcccCC-CCCC
Q 048797 2 LNAL--GVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK--GKWHPRCDLLIRIKALDDC-K--AVCPQA-QDSK 71 (240)
Q Consensus 2 al~~--G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~--~~~~~~~~v~lRi~~~~~~-~--~~~~~~-~~sk 71 (240)
|+++ |++|++|+|+||+|++++|++|+++|+.++ |++||+ .+..++++|+||||| +.. + .....+ ..||
T Consensus 72 al~~~~G~~~~~Iif~gp~K~~~~l~~a~~~gv~i~~Ds~~El~~i~~~~~~~~v~lRi~~-~~~~~~~~~~~~~~~~sk 150 (368)
T cd06840 72 VLKLFPDLDPRRVLFTPNFAARSEYEQALELGVNVTVDNLHPLREWPELFRGREVILRIDP-GQGEGHHKHVRTGGPESK 150 (368)
T ss_pred HHHcccCCCcceEEEcCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHhcccCCEEEEECC-CCCCCCCCceecCCCCCC
Confidence 4555 999999999999999999999999999766 999999 566677899999999 532 2 222233 2579
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc-------------
Q 048797 72 CGANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH------------- 138 (240)
Q Consensus 72 FG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld------------- 138 (240)
||++.+++.++++.+++.++++.|+|||+|||+.+++.|.++++.+.++.+. +. ++++||
T Consensus 151 FG~~~~~~~~~l~~~~~~~l~l~GlhfH~GS~~~~~~~~~~~~~~~~~l~~~-----~~--~~~~idiGGGf~~~y~~~~ 223 (368)
T cd06840 151 FGLDVDELDEARDLAKKAGIIVIGLHAHSGSGVEDTDHWARHGDYLASLARH-----FP--AVRILNVGGGLGIPEAPGG 223 (368)
T ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEEECCCCCCCHHHHHHHHHHHHHHHHh-----cC--CCCEEEecCcccCCCCCCC
Confidence 9999999999999999999999999999999999999999988765554433 22 677777
Q ss_pred ------hhHHHHhhh---cCC-----CC--eeeeCceEEEEe-------------------Ccee-eeeccC--------
Q 048797 139 ------WRRGRADCH---FGA-----GP--FPRDSAFTLATR-------------------NCRE-SSACSN-------- 174 (240)
Q Consensus 139 ------~i~~~l~~~---~~~-----~p--~lva~a~~l~t~-------------------n~~~-P~~~~~-------- 174 (240)
.+.+.+++. +++ || |+|++||+|+++ |.++ |.++..
T Consensus 224 ~~~~~~~~~~~i~~~~~~~~~~~l~~EPGR~lva~ag~lvt~V~~vK~~~~~~~~~~d~G~~~l~~p~~~~~~~~~~~~~ 303 (368)
T cd06840 224 RPIDLDALDAALAAAKAAHPQYQLWMEPGRFIVAESGVLLARVTQIKHKDGVRFVGLETGMNSLIRPALYGAYHEIVNLS 303 (368)
T ss_pred CCCCHHHHHHHHHHHHhhCCCcEEEEecCceeeecceEEEEEEEEEEecCCcEEEEEeCchhcccchhhhcccceeEecC
Confidence 234444332 222 35 999999999999 1111 433221
Q ss_pred CCCCCCeeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCeeE
Q 048797 175 RTCTGMIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPT 236 (240)
Q Consensus 175 ~~~~~~~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~ 236 (240)
.....+..+++|+||||++.|+|.++. |++++||||+|.|||||+++|+++||++++|++|+
T Consensus 304 ~~~~~~~~~~~v~Gp~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~~~~v~ 367 (368)
T cd06840 304 RLDEPPAGNADVVGPICESGDVLGRDRLLPETEEGDVILIANAGAYGFCMASTYNLREPAEEVV 367 (368)
T ss_pred CCCcCCcceEEEEeCCcCCCCEEeecccCCCCCCCCEEEEecCCcchHhhhhhccCCCCCCEEe
Confidence 111123467999999999999999988 89999999999999999999999999999998664
No 5
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=100.00 E-value=4.3e-46 Score=334.02 Aligned_cols=233 Identities=17% Similarity=0.197 Sum_probs=181.9
Q ss_pred CcccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc--cc-----cCCCCcEEEEEeeCCC-CCCc--ccCC-
Q 048797 1 MLNALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK--GK-----WHPRCDLLIRIKALDD-CKAV--CPQA- 67 (240)
Q Consensus 1 ~al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~--~~-----~~~~~~v~lRi~~~~~-~~~~--~~~~- 67 (240)
+|+++||+|++|+|+||+|++++|++|+++|+.++ |++||+ .+ ..++++|+||||| +. .... ...+
T Consensus 63 ~al~~G~~~~~Ii~~gp~K~~~~L~~ai~~gv~i~iDS~~El~~i~~~a~~~~~~~~~v~lRvnp-~~~~~~~~~~~~~~ 141 (379)
T cd06836 63 LALAAGFPPERIVFDSPAKTRAELREALELGVAINIDNFQELERIDALVAEFKEASSRIGLRVNP-QVGAGKIGALSTAT 141 (379)
T ss_pred HHHHcCCChhhEEEeCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHhcCCCceEEEEECC-CCCCCCccccccCC
Confidence 47889999999999999999999999999999766 999999 22 3456899999998 42 2211 1222
Q ss_pred CCCCCCCCHH--HHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCC-CCCCCCccc------
Q 048797 68 QDSKCGANLA--EIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHG-LTDQMRAKH------ 138 (240)
Q Consensus 68 ~~skFG~~~~--~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g-~~~~~~~ld------ 138 (240)
..||||++++ ++.++++... .+..+.|||||+|||+.+++.|.++++.+.++++++.+.+| . ++++||
T Consensus 142 ~~skFG~~~~~~~~~~~~~~~~-~~~~l~GlH~H~GS~~~~~~~~~~~~~~~~~l~~~l~~~~g~~--~~~~IDiGGGf~ 218 (379)
T cd06836 142 ATSKFGVALEDGARDEIIDAFA-RRPWLNGLHVHVGSQGCELSLLAEGIRRVVDLAEEINRRVGRR--QITRIDIGGGLP 218 (379)
T ss_pred CCCCCCcCcchhHHHHHHHHHh-cCCCeEEEEEecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCcEEEeCCccc
Confidence 2579999998 5666665433 24467899999999999999999999999999988666666 5 789999
Q ss_pred -----------------hhHHHHhhhcCC------CC--eeeeCceEEEEe-------------------Ccee-eeecc
Q 048797 139 -----------------WRRGRADCHFGA------GP--FPRDSAFTLATR-------------------NCRE-SSACS 173 (240)
Q Consensus 139 -----------------~i~~~l~~~~~~------~p--~lva~a~~l~t~-------------------n~~~-P~~~~ 173 (240)
.|++.++++++. || |+|++||+|++| |++. |..+.
T Consensus 219 v~y~~~~~~~~~~~~~~~i~~~l~~~~~~~~~l~~EPGR~lva~ag~lv~~V~~~K~~~~~~~~~~d~G~~~~~~~~~~~ 298 (379)
T cd06836 219 VNFESEDITPTFADYAAALKAAVPELFDGRYQLVTEFGRSLLAKCGTIVSRVEYTKSSGGRRIAITHAGAQVATRTAYAP 298 (379)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHhccCcEEEEecChheeccceEEEEEEEEEEecCCeEEEEEcCCccccchhhhcc
Confidence 455566666653 25 999999999999 1111 21110
Q ss_pred ----------C---CCCCCCeeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCeeEE
Q 048797 174 ----------N---RTCTGMIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTC 237 (240)
Q Consensus 174 ----------~---~~~~~~~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~~ 237 (240)
. .....+..+++|+||+|++.|++.+++ |++++||||+|.+||||+++||++||++++|+++.|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~ss~fn~~~~p~~~~~ 377 (379)
T cd06836 299 DDWPLRVTVFDANGEPKTGPEVVTDVAGPCCFAGDVLAKERALPPLEPGDYVAVHDTGAYYFSSHSSYNSLPRPAVYGV 377 (379)
T ss_pred ccCceEEecccccccccCCCceEEEEEeCCCCCCCEEeecccCCCCCCCCEEEEeCCCcchHHHHHhhhCCCCCeEEEe
Confidence 0 001123468999999999999999988 899999999999999999999999999999975443
No 6
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=100.00 E-value=8e-44 Score=322.07 Aligned_cols=232 Identities=17% Similarity=0.089 Sum_probs=181.3
Q ss_pred CcccCCCCCCcEEEcCCCCCHHHHHHHHHC---CCC--cc--CHHHHc--c----ccCCCCcEEEEEeeCCCCC--Cccc
Q 048797 1 MLNALGVSGKSVSLTVALRNENGLAEALGS---NFD--YA--SQAEIK--G----KWHPRCDLLIRIKALDDCK--AVCP 65 (240)
Q Consensus 1 ~al~~G~~~~~Ii~~gp~K~~~~l~~A~~~---gv~--~~--s~~EL~--~----~~~~~~~v~lRi~~~~~~~--~~~~ 65 (240)
+|+++|+++++|++.+++|++++|++|++. |+. ++ |++||+ . +.++.++|+||||| +... ....
T Consensus 78 ~al~~G~~~~~ii~~~g~K~~~~l~~a~~~~~~g~~v~i~vDs~~EL~~l~~~a~~~~~~~~v~lRinp-~~~~~~~~~~ 156 (409)
T cd06830 78 AALALLKTPDALIICNGYKDDEYIELALLARKLGHNVIIVIEKLSELDLILELAKKLGVKPLLGVRIKL-ASKGSGKWQE 156 (409)
T ss_pred HHHhcCCCCCCEEEECCcCCHHHHHHHHhcCcCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEEEcc-CCCCCcceec
Confidence 378899999999999999999999999876 443 23 999999 2 33567899999999 5322 1122
Q ss_pred CC-CCCCCCCCHHHHHHHHHHHHhC--CCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc----
Q 048797 66 QA-QDSKCGANLAEIGALLEAALAS--QLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH---- 138 (240)
Q Consensus 66 ~~-~~skFG~~~~~~~~~l~~a~~~--~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld---- 138 (240)
++ ..||||++.+++.++++.+++. ++++.|||||+|||+.|++.|.++++.+.++++.+ ++.|+ ++++||
T Consensus 157 ~~~~~sKFGi~~~~~~~~~~~~~~~~~~l~l~GlH~H~GSq~~~~~~~~~~~~~~~~~~~~~-~~~g~--~l~~iDiGGG 233 (409)
T cd06830 157 SGGDRSKFGLTASEILEVVEKLKEAGMLDRLKLLHFHIGSQITDIRRIKSALREAARIYAEL-RKLGA--NLRYLDIGGG 233 (409)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHhcCcCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHH-HHhCC--CCcEEEcCCC
Confidence 22 3679999999999999999986 57899999999999999999999999999999984 44577 888888
Q ss_pred -------------------------hhHHHHhhhcC-----C-----CC--eeeeCceEEEEe-----------------
Q 048797 139 -------------------------WRRGRADCHFG-----A-----GP--FPRDSAFTLATR----------------- 164 (240)
Q Consensus 139 -------------------------~i~~~l~~~~~-----~-----~p--~lva~a~~l~t~----------------- 164 (240)
.|.+.+++++. . || |+|++||+|+||
T Consensus 234 f~v~y~~~~~~~~~~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~l~~EpGR~lva~ag~lvt~V~~~K~~~~~~~~~dg~ 313 (409)
T cd06830 234 LGVDYDGSRSSSDSSFNYSLEEYANDIVKTVKEICDEAGVPHPTIVTESGRAIVAHHSVLIFEVLGVKRLADWYFCNFSL 313 (409)
T ss_pred cccCCCCCcCcccCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCEEEEecCHHhhhhceEEEEEeEEEEecCCEEEEeccc
Confidence 13344444431 1 25 999999999999
Q ss_pred -Ccee---------eeeccCCCCCCCeeeEEEeccCcCCCcccccCC--C-----------CCCCCCEEEEcCCCccccc
Q 048797 165 -NCRE---------SSACSNRTCTGMIYNSTVFGPTLDAYDKLFTGH--P-----------ELQVGNWLVFSQIGACTAV 221 (240)
Q Consensus 165 -n~~~---------P~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~--p-----------~l~~GD~l~~~~~GAY~~~ 221 (240)
+.+. |+....+....+..+++|+||+|+|.|++.+++ | ++++||||+|.++||||.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Gp~C~s~D~~~~~~~l~~~~~~~~lp~~~~~~GD~l~~~~~GAY~~s 393 (409)
T cd06830 314 FQSLPDSWAIDQLFPIMPLHRLNEKPTRRAVLGDITCDSDGKIDSFIDPPDILPTLPLHPLRKDEPYYLGFFLVGAYQEI 393 (409)
T ss_pred ccCCcchHHhCCCceEEECCCCCCCCceeEEEeccCcCCCCEEeeecccccccccccCCCCCCCCCCEEEEEeccHhhHH
Confidence 1111 222211111224568999999999999999887 5 2479999999999999999
Q ss_pred cCCCCCCCCCCCeeE
Q 048797 222 YGSGFKGFNTADIPT 236 (240)
Q Consensus 222 ~s~~Fn~~~~p~~v~ 236 (240)
||++||++++|++|+
T Consensus 394 ~ss~fn~~~~p~~v~ 408 (409)
T cd06830 394 LGDLHNLFGDTNAVH 408 (409)
T ss_pred HHhcccCCCCCCEEe
Confidence 999999999998764
No 7
>PLN02537 diaminopimelate decarboxylase
Probab=100.00 E-value=2.8e-43 Score=318.97 Aligned_cols=232 Identities=18% Similarity=0.114 Sum_probs=184.8
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc------cccCCCCcEEEEEeeCCCCCC---cccCCC-C
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK------GKWHPRCDLLIRIKALDDCKA---VCPQAQ-D 69 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~------~~~~~~~~v~lRi~~~~~~~~---~~~~~~-~ 69 (240)
++++||++++|+|+||.|++++|+.|+++|+.++ |++||+ ++.++.++|+||||| +.... ....+. .
T Consensus 80 al~~G~~~~~ii~~g~~k~~~~l~~a~~~gv~i~ids~~el~~l~~~a~~~~~~~~v~lRvnp-~~~~~~~~~i~tG~~~ 158 (410)
T PLN02537 80 ALRAGFDPTRCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVEAARIAGKKVNVLLRINP-DVDPQVHPYVATGNKN 158 (410)
T ss_pred HHHcCCCcceEEEECCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHhcCCCceEEEEECC-CCCCCCCCccccCCCC
Confidence 5689999999999999999999999999999765 999998 234566899999998 53221 122222 4
Q ss_pred CCCCCCHHHHHHHHHHHHhC--CCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc---------
Q 048797 70 SKCGANLAEIGALLEAALAS--QLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH--------- 138 (240)
Q Consensus 70 skFG~~~~~~~~~l~~a~~~--~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld--------- 138 (240)
||||++.+++.++++.+++. ++++.|+|||+|||+.+.+.|.++++.+.++++. .++.|+ ++++||
T Consensus 159 sRfGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~-~~~~g~--~~~~idiGGGf~v~y 235 (410)
T PLN02537 159 SKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYVDE-IRAQGF--ELSYLNIGGGLGIDY 235 (410)
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCCcEEEEEeccCCCCCchHHHHHHHHHHHHHHHH-HHHcCC--CccEEEcCCCccccC
Confidence 69999999999999988886 7999999999999999999999999999999999 555688 899998
Q ss_pred ---------------hhHHHHhhhcC---CCC--eeeeCceEEEEe-------------------Ccee-eeeccC----
Q 048797 139 ---------------WRRGRADCHFG---AGP--FPRDSAFTLATR-------------------NCRE-SSACSN---- 174 (240)
Q Consensus 139 ---------------~i~~~l~~~~~---~~p--~lva~a~~l~t~-------------------n~~~-P~~~~~---- 174 (240)
.|++.++++-. -|| |+|++||+|+++ |.++ |.++..
T Consensus 236 ~~~~~~~~~~~~~~~~i~~~~~~~~~~li~EPGR~lva~ag~lv~~V~~~k~~~~~~~~~~dgg~~~~~~p~~~~~~~~~ 315 (410)
T PLN02537 236 YHAGAVLPTPRDLIDTVRELVLSRDLTLIIEPGRSLIANTCCFVNRVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHI 315 (410)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCEEEEccChhhhccceEEEEEEEEEeecCCcEEEEEeCccccccchHhhccccce
Confidence 12233332211 135 999999999999 1111 432221
Q ss_pred ----CC-CCCCeeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCeeEE
Q 048797 175 ----RT-CTGMIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTC 237 (240)
Q Consensus 175 ----~~-~~~~~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~~ 237 (240)
.. ...+..+++|+||+|++.|+|.+++ |++++||||+|.|+|||+++|+++||++++|+++++
T Consensus 316 ~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~lp~~~~GD~l~~~~~GAY~~s~~s~fn~~~~p~~v~~ 385 (410)
T PLN02537 316 ELVSPPPPDAEVSTFDVVGPVCESADFLGKDRELPTPPKGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 385 (410)
T ss_pred eEccCCCCCCCceEEEEecCccCCCCEEEEcccCCCCCCCCEEEEeCCCcccHhhhHHhcCCCCCeEEEE
Confidence 11 1123567899999999999999987 899999999999999999999999999999986554
No 8
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=100.00 E-value=3.7e-43 Score=318.63 Aligned_cols=228 Identities=23% Similarity=0.287 Sum_probs=178.0
Q ss_pred cccCCCCC----CcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc--cccCCCCcEEEEEeeCCCCC---CcccCC-CC
Q 048797 2 LNALGVSG----KSVSLTVALRNENGLAEALGSNFDYA--SQAEIK--GKWHPRCDLLIRIKALDDCK---AVCPQA-QD 69 (240)
Q Consensus 2 al~~G~~~----~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~--~~~~~~~~v~lRi~~~~~~~---~~~~~~-~~ 69 (240)
|+++|++| ++|+|+||+|++++|++|++.|+.++ |++||+ .+..++++|+||||| +... ....++ ..
T Consensus 83 a~~~G~~~~~~~~~Ii~~gp~k~~~~l~~a~~~gv~i~vDs~~el~~i~~~~~~~~v~lRvn~-~~~~~~~~~~~~~~~~ 161 (420)
T PRK11165 83 ALAAGYKPGTEPDEIVFTADVIDRATLARVVELKIPVNAGSIDMLDQLGQVSPGHRVWLRINP-GFGHGHSQKTNTGGEN 161 (420)
T ss_pred HHHcCCCCCCCCCeEEEeCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHhcCCCcEEEEECC-CCCCCCCCceecCCCC
Confidence 67899999 69999999999999999999999666 999999 555667899999998 5321 112222 36
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc-----------
Q 048797 70 SKCGANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH----------- 138 (240)
Q Consensus 70 skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld----------- 138 (240)
||||++.+++.++++.+++.++++.|||||+|||+ +++.+.+.++.+.++ .+++|+ ++++||
T Consensus 162 sKFGi~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~-~~~~~~~~~~~l~~~----~~~~g~--~~~~IdiGGGf~~~y~~ 234 (420)
T PRK11165 162 SKHGIWHEDLPAALAVIQRYGLKLVGIHMHIGSGV-DYGHLEQVCGAMVRQ----VIELGQ--DIEAISAGGGLSIPYRE 234 (420)
T ss_pred CCCCCCHHHHHHHHHHHHhCCCcEEEEEEeccCCC-ChHHHHHHHHHHHHH----HHHhCC--CCcEEEeCCCcccCCCC
Confidence 79999999999999988888999999999999987 888887776655443 455788 889998
Q ss_pred ---------------hhHHHHhhhcCC------CC--eeeeCceEEEEe-------------------Ccee-eeeccC-
Q 048797 139 ---------------WRRGRADCHFGA------GP--FPRDSAFTLATR-------------------NCRE-SSACSN- 174 (240)
Q Consensus 139 ---------------~i~~~l~~~~~~------~p--~lva~a~~l~t~-------------------n~~~-P~~~~~- 174 (240)
.+.+.+++.++. || |+|++||+|+|+ |+++ |.++..
T Consensus 235 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~EPGR~lva~ag~lvt~V~~~K~~~~~~~~i~D~G~n~l~~p~~~~~~ 314 (420)
T PRK11165 235 GEEPVDTEHYFGLWDAARKRIARHLGHPVKLEIEPGRFLVAESGVLVAQVRAVKQMGSRHFVLVDAGFNDLMRPAMYGSY 314 (420)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhhcCCCceEEEccCcceeecceEEEEEEEEEEecCCcEEEEEeCCcccCchhhhcccc
Confidence 112334344432 25 999999999999 1221 333221
Q ss_pred -------CCCC----CCeeeEEEeccCcCCCcccccC-------C--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCe
Q 048797 175 -------RTCT----GMIYNSTVFGPTLDAYDKLFTG-------H--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADI 234 (240)
Q Consensus 175 -------~~~~----~~~~~~~i~G~~C~~~D~l~~~-------~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~ 234 (240)
.... ...++++|+||+|++.|+|+++ + |++++||+|+|.++|||+++|+++||++++|++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~v~Gp~C~~~D~l~~~~~~~~~~~~lP~l~~GD~l~i~~~GAY~~~~ss~fn~~~~p~~ 394 (420)
T PRK11165 315 HHISVLAADGRSLEEAPTVDTVVAGPLCESGDVFTQQEGGVVETRALPQVQVGDYLVFHDTGAYGASMSSNYNSRPLLPE 394 (420)
T ss_pred cceEEecCCCcccccCCceEEEEEeCCCCCCCEEeeccCcccceeECCCCCCCCEEEEecCCCCcHHHHHhhcCCCCCcE
Confidence 0011 1246899999999999999965 5 899999999999999999999999999999986
Q ss_pred eEE
Q 048797 235 PTC 237 (240)
Q Consensus 235 v~~ 237 (240)
|++
T Consensus 395 v~~ 397 (420)
T PRK11165 395 VLF 397 (420)
T ss_pred EEE
Confidence 654
No 9
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=100.00 E-value=1.2e-42 Score=313.81 Aligned_cols=232 Identities=17% Similarity=0.103 Sum_probs=184.2
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc------cccCCCCcEEEEEeeCCCC--CCcccCC-CCC
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK------GKWHPRCDLLIRIKALDDC--KAVCPQA-QDS 70 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~------~~~~~~~~v~lRi~~~~~~--~~~~~~~-~~s 70 (240)
++++|+++++|+|+||+|++++|++|+++|+.++ |++||+ ++.++.++|+||||+ +.. +....++ ..|
T Consensus 86 ~~~~G~~~~~I~~~gp~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~~~~~~v~LRin~-~~~~~~~~~~~~~~~s 164 (398)
T TIGR03099 86 ALDTGYDPGCISFAGPGKTDAELRRALAAGVLINVESLRELNRLAALSEALGLRARVAVRVNP-DFELKGSGMKMGGGAK 164 (398)
T ss_pred HHHcCCChhHEEEeCCCCCHHHHHHHHhCCCEEEECCHHHHHHHHHHHHhcCCCCcEEEEECC-CCCCCCcccccCCCCC
Confidence 5779999999999999999999999999999655 999998 223456899999998 532 1222232 257
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc------------
Q 048797 71 KCGANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH------------ 138 (240)
Q Consensus 71 kFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld------------ 138 (240)
|||++.+++.++++.+++.++++.|+|||+||++.+++.|.++++.+.+.+..+.++.|+ ++++||
T Consensus 165 rFGi~~~e~~~~~~~~~~~~l~l~Glh~h~gs~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~idiGGG~~v~~~~~ 242 (398)
T TIGR03099 165 QFGIDAEQVPAALAFIKAADLDFQGFHIFAGSQNLNAEAIIEAQAKTLALALRLAESAPA--PVRVINIGGGFGIPYFPG 242 (398)
T ss_pred cCCCCHHHHHHHHHHHHhCCCeEEEEEecccccCCCHHHHHHHHHHHHHHHHHHHHHhCC--CCCEEEeCCcccCCCCCC
Confidence 999999999999999998899999999999999999999999888887765554666788 888888
Q ss_pred -----------hhHHHHhhhcC---C-----CC--eeeeCceEEEEe-------------------Ccee-e--------
Q 048797 139 -----------WRRGRADCHFG---A-----GP--FPRDSAFTLATR-------------------NCRE-S-------- 169 (240)
Q Consensus 139 -----------~i~~~l~~~~~---~-----~p--~lva~a~~l~t~-------------------n~~~-P-------- 169 (240)
.+.+.++++++ . || |++++||+|+++ |+++ |
T Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~EPGR~lva~ag~lv~~V~~~k~~~~~~~~~~d~g~~~~~~~~~~~~~~~ 322 (398)
T TIGR03099 243 NPPLDLAPVGAALAALFARLRDALPEVEILLELGRYLVGEAGIYVCRVIDRKISRGETFLVTDGGLHHHLSASGNFGQVI 322 (398)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCCEEEEecChheeccceEEEEEEEEEEecCCcEEEEEcCCccccccccccccchh
Confidence 23344454432 1 25 999999999999 1111 2
Q ss_pred -----eeccCCCCCCCeeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccC-CCCCCCCCCCeeE
Q 048797 170 -----SACSNRTCTGMIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYG-SGFKGFNTADIPT 236 (240)
Q Consensus 170 -----~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s-~~Fn~~~~p~~v~ 236 (240)
+............+++|+||+|++.|+|.+++ |++++||||+|.|+|||+++|+ ++||++++|++|+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~~~~~~~lp~~~~GD~l~~~~~GAY~~~~s~~~fn~~~~~~~v~ 397 (398)
T TIGR03099 323 RRNYPVVIGNRIGGAVREIASIVGPLCTPLDLLAEKGTLPVAEPGDLVVIFQSGAYGASASPLAFLGHPEAVELL 397 (398)
T ss_pred ccCceeEEccCCCCCCceEEEEEeCCCCCCCEEeecCcCCCCCCCCEEEEcCCCCcchhhChHhhhCCCCCCEEe
Confidence 11111111223578999999999999999988 8999999999999999999999 5999999999876
No 10
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=100.00 E-value=1.9e-42 Score=310.41 Aligned_cols=231 Identities=16% Similarity=0.100 Sum_probs=184.8
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCc--c-CHHHHc------cccCCCCcEEEEEeeCCCC---CCcccCCC-
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFDY--A-SQAEIK------GKWHPRCDLLIRIKALDDC---KAVCPQAQ- 68 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~--~-s~~EL~------~~~~~~~~v~lRi~~~~~~---~~~~~~~~- 68 (240)
++++| ++++|+|+||+|++++|+.|+++|+.. + |.+||+ .+.+++++|+||||+ +.. ++.+.++.
T Consensus 63 ~~~~~-~~~~I~~~gp~k~~~~l~~a~~~gi~~i~vds~~el~~l~~~a~~~~~~~~v~lRi~~-~~~~~~~~~~~~~~~ 140 (377)
T cd06843 63 VRAAV-PDAPLIFGGPGKTDSELAQALAQGVERIHVESELELRRLNAVARRAGRTAPVLLRVNL-ALPDLPSSTLTMGGQ 140 (377)
T ss_pred HHhcC-CCCeEEEeCCCCCHHHHHHHHHcCCCEEEeCCHHHHHHHHHHHHHcCCCceEEEEECC-CCCCCCCcceecCCC
Confidence 34556 689999999999999999999999864 3 999998 233567899999998 532 23334442
Q ss_pred CCCCCCCHHHHHHHHHHHHhC-CCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc---------
Q 048797 69 DSKCGANLAEIGALLEAALAS-QLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH--------- 138 (240)
Q Consensus 69 ~skFG~~~~~~~~~l~~a~~~-~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld--------- 138 (240)
.||||++++++.++++.+++. ++++.|||||+|||+.|++.|.++++.+.+++.++.+++|+ ++++||
T Consensus 141 ~srfG~~~~~~~~~~~~~~~~~~l~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~--~~~~idiGGGf~~~y 218 (377)
T cd06843 141 PTPFGIDEADLPDALELLRDLPNIRLRGFHFHLMSHNLDAAAHLALVKAYLETARQWAAEHGL--DLDVVNVGGGIGVNY 218 (377)
T ss_pred CCCCCcCHHHHHHHHHHHHhCCCccEEEEEEEcCcCcCChHHHHHHHHHHHHHHHHHHHHhCC--CCcEEEecCcccccc
Confidence 579999999999999988886 89999999999999999999999999988888886777899 999999
Q ss_pred --------------hhHHHHhhhcCC-----CC--eeeeCceEEEEe-------------------Ccee-eeecc----
Q 048797 139 --------------WRRGRADCHFGA-----GP--FPRDSAFTLATR-------------------NCRE-SSACS---- 173 (240)
Q Consensus 139 --------------~i~~~l~~~~~~-----~p--~lva~a~~l~t~-------------------n~~~-P~~~~---- 173 (240)
.|++.+++++.. || |+|++||+|+|| |.+. |..+.
T Consensus 219 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~EpGR~lva~ag~lv~~V~~~k~~~~~~~~~~d~g~~~~~~p~~~~~~~~ 298 (377)
T cd06843 219 ADPEEQFDWAGFCEGLDQLLAEYEPGLTLRFECGRYISAYCGYYVTEVLDLKRSHGEWFAVLRGGTHHFRLPAAWGHNHP 298 (377)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEccChhhhcCceEEEEEEEEEeecCCcEEEEEeCccccccchHHhcCCCc
Confidence 344556555321 25 999999999999 1111 22111
Q ss_pred ----C-CC-------CCCCeeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCC-CCCCCCCCCeeE
Q 048797 174 ----N-RT-------CTGMIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGS-GFKGFNTADIPT 236 (240)
Q Consensus 174 ----~-~~-------~~~~~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~-~Fn~~~~p~~v~ 236 (240)
. .. ...+..+++|+||+|++.|+|.++. |++++||||+|.++|||+++|++ +||++++|++|+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~lp~~~~GD~l~i~~~GAY~~~~s~~~fn~~~~p~~v~ 376 (377)
T cd06843 299 FSVLPVEEWPYPWPRPSVRDTPVTLVGQLCTPKDVLARDVPVDRLRAGDLVVFPLAGAYGWNISHHDFLMHPHPERIY 376 (377)
T ss_pred eEeccccccccccccccCCceEEEEEeCCCCCCCEEeeccccCCCCCCCEEEEcCCCccchhhchhhhhCCCCCCEEe
Confidence 1 00 0123467999999999999999988 89999999999999999999996 999999999765
No 11
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=100.00 E-value=1.8e-42 Score=314.37 Aligned_cols=232 Identities=21% Similarity=0.208 Sum_probs=186.3
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCC-cc--CHHHHc--c----ccCCCCcEEEEEeeCCCC---CCcccCCC-
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFD-YA--SQAEIK--G----KWHPRCDLLIRIKALDDC---KAVCPQAQ- 68 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~-~~--s~~EL~--~----~~~~~~~v~lRi~~~~~~---~~~~~~~~- 68 (240)
++++|+++++|+|+||+|++++|+.|+++|+. ++ |++||+ . +..+..+|+||||| +.. +.....+.
T Consensus 87 ~~~~G~~~~~I~~~gp~k~~~~l~~a~~~gi~~i~iDs~~el~~l~~~a~~~~~~~~v~lRIn~-~~~~~~~~~~~~g~~ 165 (417)
T TIGR01048 87 ALAAGFPPEKIVFNGNGKSRAELERALELGIRCINVDSESELELLNEIAPELGKKARVSLRVNP-GVDAKTHPYISTGLE 165 (417)
T ss_pred HHHcCCCcceEEEeCCCCCHHHHHHHHHcCCCEEEeCCHHHHHHHHHHHHhcCCCceEEEEECC-CCCCCCCCCeecCCC
Confidence 56789999999999999999999999999997 54 999998 2 23445799999998 532 11222232
Q ss_pred CCCCCCCHHHHHHHHHHHHhC-CCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc---------
Q 048797 69 DSKCGANLAEIGALLEAALAS-QLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH--------- 138 (240)
Q Consensus 69 ~skFG~~~~~~~~~l~~a~~~-~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld--------- 138 (240)
.||||++++++.++++.+++. ++++.|||||+||+..|++.|.++++.+.++++.+ ++.|+ ++++||
T Consensus 166 ~srfGi~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~d~~~~~~~~~~~~~~~~~l-~~~g~--~l~~idiGGG~~~~y 242 (417)
T TIGR01048 166 DSKFGIDVEEALEAYLYALQLPHLELVGIHCHIGSQITDLSPFVEAAEKVVDLVEEL-KAEGI--DLEFLDLGGGLGIPY 242 (417)
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHH-HhcCC--CccEEEeCCcccccc
Confidence 479999999999999888776 59999999999999999999999999999999984 45677 888888
Q ss_pred --------------hhHHHHhhhcC--C------CC--eeeeCceEEEEe-------------------Ccee-eeeccC
Q 048797 139 --------------WRRGRADCHFG--A------GP--FPRDSAFTLATR-------------------NCRE-SSACSN 174 (240)
Q Consensus 139 --------------~i~~~l~~~~~--~------~p--~lva~a~~l~t~-------------------n~~~-P~~~~~ 174 (240)
.|.+.++++++ . || |++++||+|+++ |.++ |..+..
T Consensus 243 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~EPGR~lva~~g~lv~~V~~~k~~~~~~~~~~d~g~~~~~~~~~~~~ 322 (417)
T TIGR01048 243 TPEEEPPDPEEYAQAILAALEGYADLGLDPKLILEPGRSIVANAGVLLTRVGFVKEVGSRNFVIVDAGMNDLIRPALYGA 322 (417)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEccCceeeccceEEEEEEEEEEecCCCEEEEEeCCcccchhhhhccc
Confidence 45666666532 1 25 999999999999 1111 332221
Q ss_pred --------CCCCCCeeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCeeEE
Q 048797 175 --------RTCTGMIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTC 237 (240)
Q Consensus 175 --------~~~~~~~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~~ 237 (240)
.....+..+++|+||||++.|+|.+++ |++++||||+|.|+|||+++++++||++|+|+++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~~ 395 (417)
T TIGR01048 323 YHHIIVANRTNDAPTEVADVVGPLCESGDVLARDRELPEVEPGDLLAVFDAGAYGASMSSNYNSRPRPAEVLV 395 (417)
T ss_pred cceEEEccCCCCCCceEEEEEeCCcCCCCEEeeccCCCCCCCCCEEEEeCCCcchHHHHHHhhCCCCCeEEEE
Confidence 111223578999999999999999887 899999999999999999999999999999986654
No 12
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=100.00 E-value=6.1e-42 Score=333.76 Aligned_cols=227 Identities=16% Similarity=0.157 Sum_probs=181.7
Q ss_pred cccC--CCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc--cccCCCCcEEEEEeeCCCC-C--CcccCC-CCCC
Q 048797 2 LNAL--GVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK--GKWHPRCDLLIRIKALDDC-K--AVCPQA-QDSK 71 (240)
Q Consensus 2 al~~--G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~--~~~~~~~~v~lRi~~~~~~-~--~~~~~~-~~sk 71 (240)
|+++ |++|++|+|+||+|++++|++|+++|+.++ |++||+ .+..++.+|+||||| +.. + .....+ ..||
T Consensus 563 al~~~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~i~vDS~~EL~~i~~~~~~~~v~lRinp-~~~~~~~~~~~~~~~~sK 641 (861)
T PRK08961 563 VFELFPELSPERVLFTPNFAPRAEYEAAFALGVTVTLDNVEPLRNWPELFRGREVWLRIDP-GHGDGHHEKVRTGGKESK 641 (861)
T ss_pred HHHhcCCCCCCeEEECCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHhCCCCcEEEEECC-CCCCCCCcccccCCCCCC
Confidence 4555 999999999999999999999999999766 999999 566677899999999 532 1 222222 3679
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc-------------
Q 048797 72 CGANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH------------- 138 (240)
Q Consensus 72 FG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld------------- 138 (240)
||++++++.++++.+++.++++.|+|||+|||+.+++.|.++++.+.++.+. + . ++++||
T Consensus 642 FGi~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~l~~~----~-~--~~~~iDiGGGf~v~y~~~~ 714 (861)
T PRK08961 642 FGLSQTRIDEFVDLAKTLGITVVGLHAHLGSGIETGEHWRRMADELASFARR----F-P--DVRTIDLGGGLGIPESAGD 714 (861)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHHHh----c-c--CCcEEEecCccCcCCCCCC
Confidence 9999999999999999999999999999999999999999988877666554 2 2 566777
Q ss_pred ------hhHHHHhhhcCC--------CC--eeeeCceEEEEe-------------------Ccee-eeeccC--------
Q 048797 139 ------WRRGRADCHFGA--------GP--FPRDSAFTLATR-------------------NCRE-SSACSN-------- 174 (240)
Q Consensus 139 ------~i~~~l~~~~~~--------~p--~lva~a~~l~t~-------------------n~~~-P~~~~~-------- 174 (240)
.+.+.+++++.. || |++++||+|+++ |+++ |.++..
T Consensus 715 ~~~~~~~~~~~i~~~~~~~~~~~li~EPGR~lva~ag~lvt~V~~vK~~~~~~~~~~d~G~~~l~~p~~~~~~~~~~~~~ 794 (861)
T PRK08961 715 EPFDLDALDAGLAEVKAQHPGYQLWIEPGRYLVAEAGVLLARVTQVKEKDGVRRVGLETGMNSLIRPALYGAYHEIVNLS 794 (861)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCEEEEccCceeeecceEEEEEEEEEEecCCceEEEECCcccccCChhhhcccccceecC
Confidence 344555544321 25 999999999999 1221 433221
Q ss_pred CCCCCCeeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCeeE
Q 048797 175 RTCTGMIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPT 236 (240)
Q Consensus 175 ~~~~~~~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~ 236 (240)
.....+..+++|+||+|++.|+|.++. |++++||||+|.|+|||+++|+++||++|+|++|+
T Consensus 795 ~~~~~~~~~~~v~Gp~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~ss~fn~~p~p~ev~ 858 (861)
T PRK08961 795 RLDEPAAGTADVVGPICESSDVLGKRRRLPATAEGDVILIANAGAYGYSMSSTYNLREPAREVV 858 (861)
T ss_pred CCCCCCceEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEeCCCcchHHHhhhhhCCCCCcEEE
Confidence 111223567999999999999999887 89999999999999999999999999999998765
No 13
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=100.00 E-value=1.5e-41 Score=304.04 Aligned_cols=231 Identities=19% Similarity=0.187 Sum_probs=186.4
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCc-c--CHHHHc--c----ccCCCCcEEEEEeeCCCC-C--CcccCCC-
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFDY-A--SQAEIK--G----KWHPRCDLLIRIKALDDC-K--AVCPQAQ- 68 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~-~--s~~EL~--~----~~~~~~~v~lRi~~~~~~-~--~~~~~~~- 68 (240)
++++|+++++|+|+||+|+.++|+.|+++|+.. + |.+||+ . +...+++|+||||+ +.. . ....++.
T Consensus 65 ~~~~G~~~~~I~~~~p~k~~~~l~~a~~~g~~~~~ids~~el~~l~~~a~~~~~~~~v~lRv~~-~~~~~~~~~~~~g~~ 143 (373)
T cd06828 65 ALKAGFPPERIVFTGNGKSDEELELALELGILRINVDSLSELERLGEIAPELGKGAPVALRVNP-GVDAGTHPYISTGGK 143 (373)
T ss_pred HHHcCCCcccEEEeCCCCCHHHHHHHHHcCCeEEEECCHHHHHHHHHHHHhcCCCCeEEEEECC-CCCCCCCCCeecCCC
Confidence 567899999999999999999999999999533 3 999998 2 33446899999998 532 1 1222232
Q ss_pred CCCCCCCHHHHHHHHHHHHh-CCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc---------
Q 048797 69 DSKCGANLAEIGALLEAALA-SQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH--------- 138 (240)
Q Consensus 69 ~skFG~~~~~~~~~l~~a~~-~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld--------- 138 (240)
.||||++++|+.++++.+++ .++++.|+|||+||+..|++.|.++++.+.++++.+ ++.|+ ++++||
T Consensus 144 ~srfGi~~~e~~~~~~~~~~~~~l~l~Gi~~H~gs~~~~~~~~~~~~~~~~~~~~~l-~~~g~--~~~~idiGGG~~~~~ 220 (373)
T cd06828 144 DSKFGIPLEQALEAYRRAKELPGLKLVGLHCHIGSQILDLEPFVEAAEKLLDLAAEL-RELGI--DLEFLDLGGGLGIPY 220 (373)
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHH-HhcCC--CCCEEEeCCCCCccc
Confidence 46999999999999999888 689999999999999999999999999999999984 46688 888888
Q ss_pred --------------hhHHHHhhhcC---C-----CC--eeeeCceEEEEe-------C---ce---------e-eeecc-
Q 048797 139 --------------WRRGRADCHFG---A-----GP--FPRDSAFTLATR-------N---CR---------E-SSACS- 173 (240)
Q Consensus 139 --------------~i~~~l~~~~~---~-----~p--~lva~a~~l~t~-------n---~~---------~-P~~~~- 173 (240)
.|.+.++++++ . || |++++||+++++ + ++ + |..+.
T Consensus 221 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~EpGR~lv~~~g~lv~~V~~~k~~~~~~~~~~d~g~~~~~~~~~~~~ 300 (373)
T cd06828 221 RDEDEPLDIEEYAEAIAEALKELCEGGPDLKLIIEPGRYIVANAGVLLTRVGYVKETGGKTFVGVDAGMNDLIRPALYGA 300 (373)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHccCCCceEEEecCcceeecceEEEEEEEEEEecCCCEEEEEeCCcccchhhHhcCC
Confidence 46667777764 1 25 999999999999 1 11 1 22221
Q ss_pred -------CCCCCCCeeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCeeE
Q 048797 174 -------NRTCTGMIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPT 236 (240)
Q Consensus 174 -------~~~~~~~~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~ 236 (240)
.........+++|+||||++.|+|.++. |++++||||+|.++|||+++++++||++++|++++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~f~~~~~p~~v~ 372 (373)
T cd06828 301 YHEIVPVNKPGEGETEKVDVVGPICESGDVFAKDRELPEVEEGDLLAIHDAGAYGYSMSSNYNSRPRPAEVL 372 (373)
T ss_pred ccceEEccCCCCCCceEEEEEeCCCCCCCEEeecccCCCCCCCCEEEEeCCCcchHHHHHHhhCCCCCcEEe
Confidence 1111134578999999999999999987 89999999999999999999999999999997553
No 14
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=100.00 E-value=1.8e-41 Score=304.39 Aligned_cols=232 Identities=19% Similarity=0.127 Sum_probs=184.5
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCC-Ccc--CHHHHc--c----ccCCCCcEEEEEeeCCCCC--CcccC-CCC
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNF-DYA--SQAEIK--G----KWHPRCDLLIRIKALDDCK--AVCPQ-AQD 69 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv-~~~--s~~EL~--~----~~~~~~~v~lRi~~~~~~~--~~~~~-~~~ 69 (240)
++++|+++++|+|+||+|++++|+.|++.|+ .++ |++||+ . +..+..+|+||||+ +... ..... +..
T Consensus 68 ~~~~G~~~~~I~~~~~~k~~~~l~~a~~~g~~~i~vds~~el~~l~~~a~~~~~~~~v~lRin~-~~~~~~~g~~~~~~~ 146 (382)
T cd06839 68 ALEAGVPPEKILFAGPGKSDAELRRAIEAGIGTINVESLEELERIDALAEEHGVVARVALRINP-DFELKGSGMKMGGGP 146 (382)
T ss_pred HHHcCCCHHHEEEeCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEECC-CCCCCCCccccCCCC
Confidence 5678999999999999999999999999995 444 999998 2 23456899999998 5321 11111 235
Q ss_pred CCCCCCHHHHHHHHHHHHh-CCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc----------
Q 048797 70 SKCGANLAEIGALLEAALA-SQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH---------- 138 (240)
Q Consensus 70 skFG~~~~~~~~~l~~a~~-~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld---------- 138 (240)
||||++++++.++++.+++ .++++.|||||+||+..+.+.+.++++.+.++++++.++.|. ++++||
T Consensus 147 sKfG~~~~~~~~~~~~~~~~~~l~l~Glh~h~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~--~~~~idiGGG~~~~~~ 224 (382)
T cd06839 147 SQFGIDVEELPAVLARIAALPNLRFVGLHIYPGTQILDADALIEAFRQTLALALRLAEELGL--PLEFLDLGGGFGIPYF 224 (382)
T ss_pred CCcCCCHHHHHHHHHHHHhCCCCcEEEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhhCC--CCCEEEecCccccccC
Confidence 7999999999999998887 689999999999999999999999999999999886777888 899999
Q ss_pred -------------hhHHHHhhhcCC--------CC--eeeeCceEEEEe-------------------Ccee-e------
Q 048797 139 -------------WRRGRADCHFGA--------GP--FPRDSAFTLATR-------------------NCRE-S------ 169 (240)
Q Consensus 139 -------------~i~~~l~~~~~~--------~p--~lva~a~~l~t~-------------------n~~~-P------ 169 (240)
.+.+.++++... || |++++||+|+|+ |.++ |
T Consensus 225 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~EPGR~l~~~ag~lv~~V~~~k~~~~~~~~~~D~g~~~~~~~~~~~~~ 304 (382)
T cd06839 225 PGETPLDLEALGAALAALLAELGDRLPGTRVVLELGRYLVGEAGVYVTRVLDRKVSRGETFLVTDGGMHHHLAASGNFGQ 304 (382)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecChhhhhhceEEEEEEEEEeecCCCEEEEEECCcccchhhhccccc
Confidence 334455554211 25 999999999999 1111 1
Q ss_pred -------eeccCCCCCCCeeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccC-CCCCCCCCCCeeE
Q 048797 170 -------SACSNRTCTGMIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYG-SGFKGFNTADIPT 236 (240)
Q Consensus 170 -------~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s-~~Fn~~~~p~~v~ 236 (240)
+........++..+++|+||+|++.|+|.++. |++++||+|+|.+||||+++|+ ++||+|++|++|+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~~fn~~~~p~~~~ 381 (382)
T cd06839 305 VLRRNYPLAILNRMGGEERETVTVVGPLCTPLDLLGRNVELPPLEPGDLVAVLQSGAYGLSASPLAFLSHPAPAEVL 381 (382)
T ss_pred cccccceeEEccCCCCCCceEEEEEeCCCCCCCEEeecccCCCCCCCCEEEEecCCCcccccChhhHhCCCCCCEEe
Confidence 11111111134578999999999999999987 8999999999999999999998 5999999998765
No 15
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.
Probab=100.00 E-value=8.4e-42 Score=302.89 Aligned_cols=212 Identities=18% Similarity=0.154 Sum_probs=158.5
Q ss_pred cEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc--cccCC--CCcEEEEEeeCCCCCCc---ccCC-CCCCCCCCHHHHH
Q 048797 11 SVSLTVALRNENGLAEALGSNFDYA--SQAEIK--GKWHP--RCDLLIRIKALDDCKAV---CPQA-QDSKCGANLAEIG 80 (240)
Q Consensus 11 ~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~--~~~~~--~~~v~lRi~~~~~~~~~---~~~~-~~skFG~~~~~~~ 80 (240)
++++.||.|+.++|++|++.|+.++ |++||+ .+..+ +++|+||||| +..... +.++ ..||||++++++.
T Consensus 70 ~~i~~~~~k~~~el~~a~~~~~~~~~Ds~~EL~~l~~~~~~~~~~v~lRvnp-~~~~~~~~~~~~~~~~sKFG~~~~~~~ 148 (346)
T cd06829 70 EVHTYSPAYRDDEIDEILRLADHIIFNSLSQLERFKDRAKAAGISVGLRINP-EYSEVETDLYDPCAPGSRLGVTLDELE 148 (346)
T ss_pred ceEEECCCCCHHHHHHHHHcCCEEEECCHHHHHHHHHHHhccCCeEEEEECC-CCCCCCCceecCCCCCCCCCCChHHhh
Confidence 5444499999999999999987554 999999 44444 7899999999 643222 1222 2579999999765
Q ss_pred HHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc-------------------hhH
Q 048797 81 ALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH-------------------WRR 141 (240)
Q Consensus 81 ~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld-------------------~i~ 141 (240)
+. .++++.|||||+|||+ +++.|.++++.+.+++.. .+. ++++|| .++
T Consensus 149 ~~------~~~~v~Glh~HvGS~~-~~~~~~~~~~~~~~~~~~----~~~--~~~~lDiGGGf~v~~~~~~~~~~~~~i~ 215 (346)
T cd06829 149 EE------DLDGIEGLHFHTLCEQ-DFDALERTLEAVEERFGE----YLP--QLKWLNLGGGHHITRPDYDVDRLIALIK 215 (346)
T ss_pred hh------hhcCceEEEEccCccc-CHHHHHHHHHHHHHHHHH----HHh--cCcEEEcCCCcCCCcCCCCHHHHHHHHH
Confidence 42 3578899999999999 999999999988887655 223 556666 233
Q ss_pred HHHhhhcCC----CC--eeeeCceEEEEe------------------Ccee-e--------eeccCCCCCCCeeeEEEec
Q 048797 142 GRADCHFGA----GP--FPRDSAFTLATR------------------NCRE-S--------SACSNRTCTGMIYNSTVFG 188 (240)
Q Consensus 142 ~~l~~~~~~----~p--~lva~a~~l~t~------------------n~~~-P--------~~~~~~~~~~~~~~~~i~G 188 (240)
+.++++ .. || |+|++||+|+|| |+++ + ..+.......+..+++|+|
T Consensus 216 ~~~~~~-~~~li~EPGR~lva~ag~lvt~V~~~K~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G 294 (346)
T cd06829 216 RFKEKY-GVEVYLEPGEAVALNTGYLVATVLDIVENGMPIAILDASATAHMPDVLEMPYRPPIRGAGEPGEGAHTYRLGG 294 (346)
T ss_pred HHHHHh-CCEEEEeCchhhhhcceEEEEEEEEEEEcCceEEEEeCChhhcCchhhccCCCccccCCCCCCCCceEEEEEc
Confidence 444443 21 36 999999999999 1111 1 1111111122356899999
Q ss_pred cCcCCCcccccCC-C-CCCCCCEEEEcCCCccccccCCCCCCCCCCCeeEE
Q 048797 189 PTLDAYDKLFTGH-P-ELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTC 237 (240)
Q Consensus 189 ~~C~~~D~l~~~~-p-~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~~ 237 (240)
|+|++.|+|.+.. | ++++||||+|+|+|||+++|+++||++++|++++|
T Consensus 295 p~C~s~D~l~~~~~~~~l~~GD~l~~~~~GAY~~s~ss~fn~~~~p~~v~~ 345 (346)
T cd06829 295 NSCLAGDVIGDYSFDEPLQVGDRLVFEDMAHYTMVKTNTFNGVRLPSIAIR 345 (346)
T ss_pred CCCCcccEEeecccCCCCCCCCEEEEeCchhhhhhhhccccCCCCCeEEec
Confidence 9999999999766 6 79999999999999999999999999999987664
No 16
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=100.00 E-value=1.8e-40 Score=296.07 Aligned_cols=229 Identities=34% Similarity=0.532 Sum_probs=185.3
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc---CHHHHc--cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCH
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFDYA---SQAEIK--GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANL 76 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~---s~~EL~--~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~ 76 (240)
++++|+++++|+|+||.|++++|+.|+++|+..+ |++||+ .+..++.++.+||++ +........ .||||+++
T Consensus 62 ~~~~G~~~~~i~~~~~~k~~~~l~~a~~~gi~~~~~ds~~el~~l~~~~~~~~v~vri~~-~~~~~~~~~--~sRfGi~~ 138 (362)
T cd00622 62 VLGLGVSPERIIFANPCKSISDIRYAAELGVRLFTFDSEDELEKIAKHAPGAKLLLRIAT-DDSGALCPL--SRKFGADP 138 (362)
T ss_pred HHHcCCCcceEEEcCCCCCHHHHHHHHHcCCCEEEECCHHHHHHHHHHCCCCEEEEEEee-CCCCCCCcc--cCCCCCCH
Confidence 5678999999999999999999999999998643 999998 444466899999999 643222223 35999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc------------------
Q 048797 77 AEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH------------------ 138 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld------------------ 138 (240)
+++.++++.+++.++++.|+|+|+||+..+.+.|.+.++.+.++++. .++.|. .+++||
T Consensus 139 ~~~~~~~~~~~~~~~~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~-l~~~~~--~~~~id~GGG~~~~y~~~~~~~~~ 215 (362)
T cd00622 139 EEARELLRRAKELGLNVVGVSFHVGSQCTDPSAYVDAIADAREVFDE-AAELGF--KLKLLDIGGGFPGSYDGVVPSFEE 215 (362)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH-HHhcCC--CcCEEEeCCCcCcccCCCCCCHHH
Confidence 99999998887778999999999999999999999999999999988 445677 888888
Q ss_pred ---hhHHHHhhhcCC-------CC--eeeeCceEEEEe-------Cc------ee----------ee---------eccC
Q 048797 139 ---WRRGRADCHFGA-------GP--FPRDSAFTLATR-------NC------RE----------SS---------ACSN 174 (240)
Q Consensus 139 ---~i~~~l~~~~~~-------~p--~lva~a~~l~t~-------n~------~~----------P~---------~~~~ 174 (240)
.|++.++++++. || |++++||+|+|| +. +. |. ....
T Consensus 216 ~~~~i~~~~~~~~~~~~~~l~~EpGr~lv~~ag~l~t~V~~vk~~~~~~~~~~~~vd~g~~~~~~~~~~~~~~~~~~~~~ 295 (362)
T cd00622 216 IAAVINRALDEYFPDEGVRIIAEPGRYLVASAFTLAVNVIAKRKRGDDDRERWYYLNDGVYGSFNEILFDHIRYPPRVLK 295 (362)
T ss_pred HHHHHHHHHHHhCCcCCCeEEEeCCchhccceEEEEEEEEEEEecCCCCceEEEEEcCCeecchhhhhhccCCceeEEec
Confidence 345556666542 24 999999999999 11 11 22 1111
Q ss_pred CCC-CCCeeeEEEeccCcCCCcccccCC--CC-CCCCCEEEEcCCCccccccCCCCCCCCCCCeeE
Q 048797 175 RTC-TGMIYNSTVFGPTLDAYDKLFTGH--PE-LQVGNWLVFSQIGACTAVYGSGFKGFNTADIPT 236 (240)
Q Consensus 175 ~~~-~~~~~~~~i~G~~C~~~D~l~~~~--p~-l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~ 236 (240)
... ..+..+++|+||+|++.|+|.+++ |+ +++||+|+|.++|||+++|+++||++++|++++
T Consensus 296 ~~~~~~~~~~~~v~G~~C~~~D~l~~~~~lp~~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~ 361 (362)
T cd00622 296 DGGRDGELYPSSLWGPTCDSLDVIYEDVLLPEDLAVGDWLLFENMGAYTTAYASTFNGFPPPKIVY 361 (362)
T ss_pred CCCCCCCeeeEEEEcCCCCcccEecccCcCcccCCCCCEEEEcCCCCccccccCCCCCCCCCeeEe
Confidence 111 234678999999999999999988 86 999999999999999999999999999997553
No 17
>TIGR01047 nspC carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus.
Probab=100.00 E-value=1.5e-41 Score=304.39 Aligned_cols=220 Identities=17% Similarity=0.103 Sum_probs=164.2
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc--cc----cCCCCcEEEEEeeCCCCCC---cccCC-CC
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK--GK----WHPRCDLLIRIKALDDCKA---VCPQA-QD 69 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~--~~----~~~~~~v~lRi~~~~~~~~---~~~~~-~~ 69 (240)
|+++ ++ ++|+++||.|+++||++|+++|+.++ |++||+ .+ ..+.++|+||||| +.... .+.++ ..
T Consensus 65 al~a-~~-~~~i~~~~~k~~~el~~a~~~g~~i~idS~~el~~l~~~a~~~~~~~~i~lRinp-~~~~~~~~~~~~~~~~ 141 (380)
T TIGR01047 65 AKEE-FG-KEIHVYSPAYSEEDVPEIIPLADHIIFNSLAQWARYRHLVEGKNSAVKLGLRINP-EYSEVGTDLYNPCGQF 141 (380)
T ss_pred HHHH-CC-CcEEEECCCCCHHHHHHHHHcCCEEEECCHHHHHHHHHHHHhcCCCceEEEEECC-CCCCCCcccccCCCCC
Confidence 4555 66 66777799999999999999998554 999999 22 3345689999999 64321 12222 36
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc-----------
Q 048797 70 SKCGANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH----------- 138 (240)
Q Consensus 70 skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld----------- 138 (240)
||||++++++.+.+ .+++.|||||+||| .+++.|.++++.+.++++. .+. ++++||
T Consensus 142 sKFGi~~~~~~~~~------~~~i~GlH~HiGS~-~~~~~~~~~i~~~~~~~~~----~~~--~~~~iDiGGGfgv~y~~ 208 (380)
T TIGR01047 142 SRLGVQADHFEESL------LDGINGLHFHTLCE-KDADALERTLEVIEERFGE----YLP--QMDWVNFGGGHHITKPG 208 (380)
T ss_pred CCCCCCHHHHhHhH------hhcCcEEEEecCCC-CCHHHHHHHHHHHHHHHHH----hhC--CCCEEEeCCCcCCCCCC
Confidence 89999999887653 25688999999999 9999999999988877654 344 677787
Q ss_pred ----hhHHHHhhhcCC-------CC--eeeeCceEEEEe------------------Ccee---------eeeccCCCC-
Q 048797 139 ----WRRGRADCHFGA-------GP--FPRDSAFTLATR------------------NCRE---------SSACSNRTC- 177 (240)
Q Consensus 139 ----~i~~~l~~~~~~-------~p--~lva~a~~l~t~------------------n~~~---------P~~~~~~~~- 177 (240)
.+.+.+++.+.. || |+|++||+|++| |.++ |.++.....
T Consensus 209 ~~~~~~~~~i~~~~~~~~~~li~EPGR~lva~ag~lv~~V~~~K~~~~~~~~vD~g~~~~~~~~~~~~~~p~~~~~~~~~ 288 (380)
T TIGR01047 209 YDVEKLIAVIKAFAERHGVQVILEPGEAIGWQTGFLVASVVDIVENEKKIAILDVSFEAHMPDTLEMPYRPSVLGASDPA 288 (380)
T ss_pred CCHHHHHHHHHHHHHHhCCEEEEeCchHHHhcCeeEEEEEEEEEECCeeEEEEecChHhcChhhhccCCCcccccCCCcc
Confidence 222333333211 36 999999999999 1111 222221100
Q ss_pred ---------CCCeeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCeeEE
Q 048797 178 ---------TGMIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTC 237 (240)
Q Consensus 178 ---------~~~~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~~ 237 (240)
..+..+++|+||+|++.|+|.++. |++++||||+|+|+|||+++|+++||++++|+++++
T Consensus 289 ~~~~~~~~~~~~~~~~~v~G~~C~s~D~l~~~~~lp~l~~GD~l~~~~~GAY~~smss~fn~~~~p~~v~~ 359 (380)
T TIGR01047 289 TRENEEISLKEGQFSYVLGGCTCLAGDVMGEYAFDEPLKVGDKLVFLDMIHYTMVKNTTFNGVKLPSLGCL 359 (380)
T ss_pred ccccccccccCCceeEEEEcCCCCcccEEeecccCCCCCCCCEEEEcCcCChhhhccCCCCCCCCCcEEEE
Confidence 013457999999999999999877 699999999999999999999999999999986654
No 18
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=100.00 E-value=1.8e-40 Score=297.78 Aligned_cols=224 Identities=22% Similarity=0.221 Sum_probs=178.8
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCCCCCCCC
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCG 73 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG 73 (240)
++++|+++++|+|+||+|++++|+.|+++|+.++ |++||+ .+.+++++|.||||+ +.... ..||||
T Consensus 71 ~~~~G~~~~~Ii~~g~~k~~~~l~~a~~~g~~i~ids~~el~~l~~~~~~~~~~~~v~lRv~~-~~g~~-----~~~rfG 144 (379)
T cd06841 71 ALKLGVPGKRIIFNGPYKSKEELEKALEEGALINIDSFDELERILEIAKELGRVAKVGIRLNM-NYGNN-----VWSRFG 144 (379)
T ss_pred HHHcCCChHHEEEECCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHhcCCcceEEEEECC-CCCCC-----CCCCCC
Confidence 5778999999999999999999999999998655 999998 234456899999998 53211 235999
Q ss_pred CCHHHHHHHHHHHHhC----CCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc-----------
Q 048797 74 ANLAEIGALLEAALAS----QLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH----------- 138 (240)
Q Consensus 74 ~~~~~~~~~l~~a~~~----~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld----------- 138 (240)
++.+|+.++++.+++. ++++.|+|||+||++.+++.|.++++.+.++++++ .|. ++++||
T Consensus 145 i~~~e~~~~~~~~~~~~~~~~l~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~~---~g~--~~~~idiGGG~~~~y~~ 219 (379)
T cd06841 145 FDIEENGEALAALKKIQESKNLSLVGLHCHVGSNILNPEAYSAAAKKLIELLDRL---FGL--ELEYLDLGGGFPAKTPL 219 (379)
T ss_pred CchhhhHHHHHHHHHhhcCCCeeEEEEEecCCCccCChHHHHHHHHHHHHHHHHh---cCC--CCCEEEeCCCcCcCcCc
Confidence 9999888877766654 89999999999999999999999999988888874 477 788888
Q ss_pred ------------------hhHHHHhhhcC---C------CC--eeeeCceEEEEe-------------------Ccee--
Q 048797 139 ------------------WRRGRADCHFG---A------GP--FPRDSAFTLATR-------------------NCRE-- 168 (240)
Q Consensus 139 ------------------~i~~~l~~~~~---~------~p--~lva~a~~l~t~-------------------n~~~-- 168 (240)
.|.+.++++++ . || |++++||+|+|+ |.+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~EpGR~lva~ag~lvt~V~~~k~~~~~~~~~~d~g~~~~~~~ 299 (379)
T cd06841 220 SLAYPQEDTVPDPEDYAEAIASTLKEYYANKENKPKLILEPGRALVDDAGYLLGRVVAVKNRYGRNIAVTDAGINNIPTI 299 (379)
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHHhhcCCCCCEEEEecCcceeccceEEEEEEEEEEEcCCcEEEEEeCCcccCcCc
Confidence 23455666653 1 25 999999999999 1111
Q ss_pred -----eeeccCCCC-CCCeeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCeeEE
Q 048797 169 -----SSACSNRTC-TGMIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTC 237 (240)
Q Consensus 169 -----P~~~~~~~~-~~~~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~~ 237 (240)
|+....... ..+..+++|+||+|++.|++.+++ |++++||||+|.|+|||+++|+++| .+++|++|++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~s~~f-~~~~p~~v~~ 375 (379)
T cd06841 300 FWYHHPILVLRPGKEDPTSKNYDVYGFNCMESDVLFPNVPLPPLNVGDILAIRNVGAYNMTQSNQF-IRPRPAVYLI 375 (379)
T ss_pred ccCCceEEEeccCCCCCCcceEEEECCCcCCCCEEeeCCcCCCCCCCCEEEEeCCCCCChhhCccc-cCCCCcEEEE
Confidence 222221111 124568999999999999999887 8999999999999999999999999 5889986654
No 19
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=100.00 E-value=6.7e-40 Score=292.81 Aligned_cols=230 Identities=26% Similarity=0.317 Sum_probs=184.8
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCC-Ccc--CHHHHc------cccCCCCcEEEEEeeCCCC-CC-cccC-CCC
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNF-DYA--SQAEIK------GKWHPRCDLLIRIKALDDC-KA-VCPQ-AQD 69 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv-~~~--s~~EL~------~~~~~~~~v~lRi~~~~~~-~~-~~~~-~~~ 69 (240)
++++|+++++|+|+||.|++++++.|+++|+ .++ |++||+ ++.+++.+|+||||+ +.. .. .... +..
T Consensus 62 ~~~~G~~~~~iv~~gp~~~~~~l~~~~~~~~~~~~vds~~el~~l~~~~~~~~~~~~v~lrin~-g~~~~~~~~~~~~~~ 140 (368)
T cd06810 62 ALAAGVPPERIIFTGPAKSVSEIEAALASGVDHIVVDSLDELERLNELAKKLGPKARILLRVNP-DVSAGTHKISTGGLK 140 (368)
T ss_pred HHHcCCCHHHEEEcCCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHHHHHhCCCCeEEEEECC-CCCCCcccCccCCCC
Confidence 5678999999999999999999999999995 444 999998 233477899999998 532 11 1111 225
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc-----------
Q 048797 70 SKCGANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH----------- 138 (240)
Q Consensus 70 skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld----------- 138 (240)
||||++++++.++++.+++.++++.|+|+|+||+..|++.|.++++.+.++++++ ++.|. ++++||
T Consensus 141 srfGi~~~e~~~~~~~~~~~~l~l~Gl~~H~gs~~~d~~~~~~~~~~~~~~~~~l-~~~g~--~~~~id~GGG~~~~y~~ 217 (368)
T cd06810 141 SKFGLSLSEARAALERAKELDLRLVGLHFHVGSQILDLETIVQALSDARELIEEL-VEMGF--PLEMLDLGGGLGIPYDE 217 (368)
T ss_pred CCcCCCHHHHHHHHHHHHhCCCcEEEEEEcCCcCCCCHHHHHHHHHHHHHHHHHH-HhcCC--CCCEEEeCCCcccccCC
Confidence 6999999999999999888889999999999999999999999999999999994 44687 888888
Q ss_pred ----------hhHHHHhhhcCC--------CC--eeeeCceEEEEe-------------------Ccee-eee-------
Q 048797 139 ----------WRRGRADCHFGA--------GP--FPRDSAFTLATR-------------------NCRE-SSA------- 171 (240)
Q Consensus 139 ----------~i~~~l~~~~~~--------~p--~lva~a~~l~t~-------------------n~~~-P~~------- 171 (240)
.|++.++++++. || |++++||+|+++ |+.+ |.+
T Consensus 218 ~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~EpGr~l~~~ag~lv~~V~~~k~~~~~~~~~~d~g~~~~~~~~~~~~~~~~ 297 (368)
T cd06810 218 QPLDFEEYAALINPLLKKYFPNDPGVTLILEPGRYIVAQAGVLVTRVVAVKVNGGRFFAVVDGGMNHSFRPALAYDAYHP 297 (368)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCCcEEEEecChhhhhhceEEEEEEEEEEecCCcEEEEEeCccccccccccccCCcce
Confidence 355666666531 24 999999999999 1111 221
Q ss_pred --ccCCCC-CCCeeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCee
Q 048797 172 --CSNRTC-TGMIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADIP 235 (240)
Q Consensus 172 --~~~~~~-~~~~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v 235 (240)
...... ..+..+++|+||||++.|++.++. |++++||||+|.++|||+++++++||++++|++|
T Consensus 298 ~~~~~~~~~~~~~~~~~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v 366 (368)
T cd06810 298 ITPLKAPGPDEPLVPATLAGPLCDSGDVIGRDRLLPELEVGDLLVFEDMGAYGFSESSNFNSHPRPAEY 366 (368)
T ss_pred eEEeCCCcccCCceeEEEECCCCCCCcEEeecccCCCCCCCCEEEEcCCCCCchhhcccccCCCCCcEE
Confidence 111111 134678999999999999999987 9999999999999999999999999999999743
No 20
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=100.00 E-value=1e-38 Score=289.97 Aligned_cols=223 Identities=18% Similarity=0.128 Sum_probs=174.7
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc------cc-cCCCCcEEEEEeeCCCCCCcccCCCCCCC
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK------GK-WHPRCDLLIRIKALDDCKAVCPQAQDSKC 72 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~------~~-~~~~~~v~lRi~~~~~~~~~~~~~~~skF 72 (240)
++++|+++++|+|+||.|++++++.|++.|+.++ |++||+ ++ .+++++|+||||+ +.. +..|||
T Consensus 74 ~~~~G~~~~~I~~~g~~k~~~~i~~a~~~gi~i~vDs~~el~~l~~~a~~~~~~~~~v~lRIn~-~~~------~~~sRf 146 (423)
T cd06842 74 ALAAGVRGDRIVATGPAKTDEFLWLAVRHGATIAVDSLDELDRLLALARGYTTGPARVLLRLSP-FPA------SLPSRF 146 (423)
T ss_pred HHHCCCCCCeEEEECCCCCHHHHHHHHhCCCEEEECCHHHHHHHHHHHHhcCCCCCEEEEEEeC-CCC------CCCCCC
Confidence 5678999999999999999999999999999755 999998 22 4467899999999 532 224599
Q ss_pred CCCHHHHHHHHHHHHhC--CCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc-----------h
Q 048797 73 GANLAEIGALLEAALAS--QLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH-----------W 139 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~--~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld-----------~ 139 (240)
|++.+++.++++.+++. ++++.|||||+||| +.+.|.++++.+.++++. .++.|+ ++++|| .
T Consensus 147 Gi~~~e~~~~~~~i~~~~~~l~l~Glh~H~gs~--~~~~~~~~~~~~~~~~~~-l~~~g~--~~~~idiGGG~~~~y~~~ 221 (423)
T cd06842 147 GMPAAEVRTALERLAQLRERVRLVGFHFHLDGY--SAAQRVAALQECLPLIDR-ARALGL--APRFIDIGGGFPVSYLAD 221 (423)
T ss_pred CCCHHHHHHHHHHHHhcCCCCeEEEEEEEcCCC--CHHHHHHHHHHHHHHHHH-HHhcCC--CCCEEEeCCCcCCCcCCc
Confidence 99999999999998887 89999999999998 889999999999999988 456788 899999 0
Q ss_pred ----------hHHHH-------------------------------------------------hhhcC--C-----CC-
Q 048797 140 ----------RRGRA-------------------------------------------------DCHFG--A-----GP- 152 (240)
Q Consensus 140 ----------i~~~l-------------------------------------------------~~~~~--~-----~p- 152 (240)
+.+.+ ++.+. . ||
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~EpG 301 (423)
T cd06842 222 AAEWEAFLAALTEALYGYGRPLTWRNEGGTLRGPDDFYPYGQPLVAADWLRAILSAPLPQGRTIAERLRDNGITLALEPG 301 (423)
T ss_pred HHHHHHHHHhhhhhhhccCCcccccccccccCCCcccccCCCCCCHHHHHHHHHhccccccccHHHHHHhcCCEEEEcCC
Confidence 00000 11111 1 25
Q ss_pred -eeeeCceEEEEe------C--------------cee---------eeeccCCCC--CCCeeeEEEeccCcCCCccccc-
Q 048797 153 -FPRDSAFTLATR------N--------------CRE---------SSACSNRTC--TGMIYNSTVFGPTLDAYDKLFT- 199 (240)
Q Consensus 153 -~lva~a~~l~t~------n--------------~~~---------P~~~~~~~~--~~~~~~~~i~G~~C~~~D~l~~- 199 (240)
|+|++||+|+|| + .+. |+....... .....+++|+||+|+++|+|++
T Consensus 302 R~lva~ag~lvt~V~~vK~~~~~~~~~~~Dgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Gp~C~~~D~l~~~ 381 (423)
T cd06842 302 RALLDQCGLTVARVAFVKQLGDGNHLIGLEGNSFSACEFSSEFLVDPLLIPAPEPTTDGAPIEAYLAGASCLESDLITRR 381 (423)
T ss_pred HHHHhhcCeEEEEEEEEeecCCCCeEEEEecCCCcCCccccceecCceeccCCCCcCCCCCceEEEeCccccchhhhhhh
Confidence 999999999999 1 110 111111100 1234678999999999999995
Q ss_pred CC--C-CCCCCCEEEEcCCCccccccC-CCCCCCCCCCeeE
Q 048797 200 GH--P-ELQVGNWLVFSQIGACTAVYG-SGFKGFNTADIPT 236 (240)
Q Consensus 200 ~~--p-~l~~GD~l~~~~~GAY~~~~s-~~Fn~~~~p~~v~ 236 (240)
.. | ++++||+|+|+++||||++++ ++||+|++|++|+
T Consensus 382 ~~~lp~~~~~GD~l~~~~~GAY~~~~~~~~fn~~~~p~ev~ 422 (423)
T cd06842 382 KIPFPRLPKPGDLLVFPNTAGYQMDFLESRFHRHPLPRRVV 422 (423)
T ss_pred hccCCCCCCCCCEEEEecchHHHHHhhhhhhcCCCCCcccc
Confidence 54 7 799999999999999999765 7999999998664
No 21
>PRK05354 arginine decarboxylase; Provisional
Probab=99.95 E-value=1.3e-26 Score=217.66 Aligned_cols=231 Identities=16% Similarity=0.112 Sum_probs=175.2
Q ss_pred CcccCCCCCCcEEEcCCCCCHHHHHHHHHC---CCC--cc--CHHHHc------cccCCCCcEEEEEeeCCC-CCCccc-
Q 048797 1 MLNALGVSGKSVSLTVALRNENGLAEALGS---NFD--YA--SQAEIK------GKWHPRCDLLIRIKALDD-CKAVCP- 65 (240)
Q Consensus 1 ~al~~G~~~~~Ii~~gp~K~~~~l~~A~~~---gv~--~~--s~~EL~------~~~~~~~~v~lRi~~~~~-~~~~~~- 65 (240)
+|+++|++|++++..++.|++++|+.|+.. |.. ++ |++||+ ++.+...+|+|||++ .. ....|.
T Consensus 137 ~AL~~g~~~~~lIi~NG~Kd~e~I~~Al~~~~lG~~v~ivIDs~~EL~~I~~~a~~~~~~p~IglRi~~-~~~~~g~~~~ 215 (634)
T PRK05354 137 AVLALAGDPGALIVCNGYKDREYIRLALIGRKLGHKVFIVIEKLSELELILEEAKELGVKPRLGVRARL-ASQGSGKWQS 215 (634)
T ss_pred HHHHcCCCCCcEEEcCCCCCHHHHHHHHHhHhcCCCEEEEECCHHHHHHHHHHHHhcCCCCeEEEEEec-CCCCCCCccc
Confidence 378899999994444448999999999643 543 33 999999 234556799999998 42 222332
Q ss_pred C-CCCCCCCCCHHHHHHHHHHHHhCCC--cEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc----
Q 048797 66 Q-AQDSKCGANLAEIGALLEAALASQL--GVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH---- 138 (240)
Q Consensus 66 ~-~~~skFG~~~~~~~~~l~~a~~~~l--~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld---- 138 (240)
. +..||||++.+|+.++++.+++.++ .+.|||||+|||+.|++.|.++++.+.+++.++ ++.|. ++++||
T Consensus 216 tgG~~SKFGl~~~ei~~~i~~lk~~~~l~~L~GLHfHiGSQi~d~~~~~~al~e~~~~~~eL-~~~G~--~l~~LDIGGG 292 (634)
T PRK05354 216 SGGEKSKFGLSATEVLEAVERLREAGLLDCLQLLHFHLGSQIANIRDIKTAVREAARFYVEL-RKLGA--PIQYLDVGGG 292 (634)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHH-HHcCC--CCCEEEeCCC
Confidence 2 2368999999999999999999874 599999999999999999999999999999984 45688 899999
Q ss_pred -------------------------hhHHHHhhhcC-----C-----CC--eeeeCceEEEEe-----------------
Q 048797 139 -------------------------WRRGRADCHFG-----A-----GP--FPRDSAFTLATR----------------- 164 (240)
Q Consensus 139 -------------------------~i~~~l~~~~~-----~-----~p--~lva~a~~l~t~----------------- 164 (240)
.|...+++.+. . || |+||++|+|+++
T Consensus 293 lgV~Y~g~~~~~~~s~nydl~eya~~Iv~~l~~~~~~~~v~~p~Ii~EpGRalVA~agvLvt~V~~vK~~~~~~~~~~~~ 372 (634)
T PRK05354 293 LGVDYDGTRSQSDSSVNYSLQEYANDVVYTLKEICEEHGVPHPTIISESGRALTAHHAVLVFNVLGVESQEYEEPPAPAE 372 (634)
T ss_pred cCcCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchhhhcceEEEEEEEEEEecCCCCCCCCcc
Confidence 22233444321 1 24 999999999999
Q ss_pred --------------------------------------------------------------------------------
Q 048797 165 -------------------------------------------------------------------------------- 164 (240)
Q Consensus 165 -------------------------------------------------------------------------------- 164 (240)
T Consensus 373 ~~~~~~~~l~~~~~~~~~~~~~e~~~da~~~~~~~~~~f~~g~~~l~~ra~~e~l~~~~~~~~~~~~~~~~~~~~~~~~l 452 (634)
T PRK05354 373 DAPPLLQNLWETYQEISERNLQEIYHDAQQDLEEALTLFALGYLSLQERAWAEQLYWAICRKIQKLLDPKNRHPPELDEL 452 (634)
T ss_pred cccHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence
Q ss_pred ----------C----------c----eeeeeccCCCCCCCeeeEEEeccCcCCCccccc-----C---C---CCCCCCC-
Q 048797 165 ----------N----------C----RESSACSNRTCTGMIYNSTVFGPTLDAYDKLFT-----G---H---PELQVGN- 208 (240)
Q Consensus 165 ----------n----------~----~~P~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~-----~---~---p~l~~GD- 208 (240)
| | +.|++...+....+....+++.-||||.+.+-. . . |+++.|.
T Consensus 453 ~~~l~~~y~~NfS~FqslPD~Wai~Q~Fpi~Pi~rl~e~p~~~~~l~DiTCDSDg~i~~fi~~~~~~~~l~lh~~~~~e~ 532 (634)
T PRK05354 453 QERLADKYYVNFSLFQSLPDAWAIDQLFPIMPLHRLDEEPTRRAVLADITCDSDGKIDQFIDGQGIKTTLPLHELDPGEP 532 (634)
T ss_pred HHHhhhheEEeeehhccccchhhhCCccceeeccccCCCcceeeEEecccccCCCchhcccCCcCCcCceeCCccCCCCc
Confidence 0 0 004443333334567889999999999997755 2 2 4788887
Q ss_pred -EEEEcCCCccccccCCCCCCCCCCCee
Q 048797 209 -WLVFSQIGACTAVYGSGFKGFNTADIP 235 (240)
Q Consensus 209 -~l~~~~~GAY~~~~s~~Fn~~~~p~~v 235 (240)
+|.|..+|||.-.++..=|-|..|.+|
T Consensus 533 y~lg~FlvGAYQe~lg~~HNLfg~~~~v 560 (634)
T PRK05354 533 YYLGFFLVGAYQEILGDMHNLFGDTNAV 560 (634)
T ss_pred cEEEEEecchhhHhhccccccCCCCCEE
Confidence 899999999999999988888888644
No 22
>TIGR01273 speA arginine decarboxylase, biosynthetic. A distinct biodegradative form is also pyridoxal phosphate-dependent but is not similar in sequence.
Probab=99.94 E-value=8.5e-25 Score=205.25 Aligned_cols=132 Identities=15% Similarity=0.157 Sum_probs=106.7
Q ss_pred cccCCCC-CCcEEEcCCCCCHHHHHHHHH---CC--CCcc--CHHHHc------cccCCCCcEEEEEeeCCCC-CCcccC
Q 048797 2 LNALGVS-GKSVSLTVALRNENGLAEALG---SN--FDYA--SQAEIK------GKWHPRCDLLIRIKALDDC-KAVCPQ 66 (240)
Q Consensus 2 al~~G~~-~~~Ii~~gp~K~~~~l~~A~~---~g--v~~~--s~~EL~------~~~~~~~~v~lRi~~~~~~-~~~~~~ 66 (240)
|+++|++ +..|+++| .|++++|+.|+. .| +.++ |++||+ ++.+...+|+||+|+ ... ...|..
T Consensus 131 Al~~g~~p~~~Ii~NG-~K~~e~I~~Al~~~~lG~~v~IvIDs~~EL~~I~~~a~~~~~~~~IglRvnl-~~~~~g~~~~ 208 (624)
T TIGR01273 131 AMAYATKPGAPIVCNG-YKDREYIELALIGRKLGHNVFIVIEKLSELDLVIEEAKKLGVKPKLGLRARL-ASKGSGKWAS 208 (624)
T ss_pred HHHcCCCCCCEEEeCC-CCCHHHHHHHHHhhhcCCCeEEEECCHHHHHHHHHHHHhcCCCceEEEEEec-CCCCCCCccc
Confidence 6788985 56888888 699999999964 34 4333 999999 244556789999998 432 223432
Q ss_pred -C-CCCCCCCCHHHHHHHHHHHHhCCC--cEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc
Q 048797 67 -A-QDSKCGANLAEIGALLEAALASQL--GVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH 138 (240)
Q Consensus 67 -~-~~skFG~~~~~~~~~l~~a~~~~l--~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld 138 (240)
+ ..||||++.+|+.++++.+++.++ .+.|||||+|||+.|++.|.++++.+.+++.+ .++.|. ++++||
T Consensus 209 tgg~~SKFGl~~~ei~~~i~~lk~~~~l~~L~GLHfHiGSQi~d~~~~~~ai~~~~~i~~e-L~~~G~--~l~~LD 281 (624)
T TIGR01273 209 SGGEKSKFGLSATQILEVVRLLEQNGLLDCLKLLHFHIGSQISNIDDVKKGVREAARFYCE-LRKLGA--KITYVD 281 (624)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH-HHHcCC--CCCEEE
Confidence 2 268999999999999999999874 48999999999999999999999999999999 445788 899999
No 23
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=99.93 E-value=1.8e-26 Score=196.23 Aligned_cols=135 Identities=23% Similarity=0.315 Sum_probs=111.8
Q ss_pred CcccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc---CHHHHc--cccCCCCcEEEEEeeCC-CCC--CcccCCC-CCC
Q 048797 1 MLNALGVSGKSVSLTVALRNENGLAEALGSNFDYA---SQAEIK--GKWHPRCDLLIRIKALD-DCK--AVCPQAQ-DSK 71 (240)
Q Consensus 1 ~al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~---s~~EL~--~~~~~~~~v~lRi~~~~-~~~--~~~~~~~-~sk 71 (240)
+|+++|++|++|+|+||+|++++|++|++.|+..+ |++||+ .+..++.+|+||||| + ..+ .....+. .||
T Consensus 56 ~a~~~g~~~~~Ii~~gp~k~~~~l~~a~~~~~~~i~vDs~~el~~l~~~~~~~~v~lRin~-~~~~~~~~~~~~g~~~sk 134 (251)
T PF02784_consen 56 LALKAGFPPDRIIFTGPGKSDEELEEAIENGVATINVDSLEELERLAELAPEARVGLRINP-GIGAGSHPKISTGGKDSK 134 (251)
T ss_dssp HHHHTTTTGGGEEEECSS--HHHHHHHHHHTESEEEESSHHHHHHHHHHHCTHEEEEEBE--SESTTTSCHHCSSSHTSS
T ss_pred HHHhhhccccceeEecCcccHHHHHHHHhCCceEEEeCCHHHHHHHhccCCCceeeEEEee-ccccccccccCCCCCCCc
Confidence 36889999999999999999999999999776544 999999 455455599999999 5 322 2223332 679
Q ss_pred CCCCHHH-HHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCC-CCccc
Q 048797 72 CGANLAE-IGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQ-MRAKH 138 (240)
Q Consensus 72 FG~~~~~-~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~-~~~ld 138 (240)
||+++++ +.++++.+++.++++.|||||+|||+.+++.|.++++.+.++++.+.+++|+ + +++||
T Consensus 135 FGi~~~~~~~~~l~~~~~~~l~l~GlH~H~gS~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~l~~id 201 (251)
T PF02784_consen 135 FGIDIEEEAEEALERAKELGLRLVGLHFHVGSQILDAEAFRQAIERLLDLAEELKEELGF--EDLEFID 201 (251)
T ss_dssp SSBEGGGHHHHHHHHHHHTTEEEEEEEE-HCSSBSSCHHHHHHHHHHHHHHHHHHHHTTT--TT-SEEE
T ss_pred CCcChHHHHHHHHHhhccceEEEEEeeeeeccCCcchHHHHHHHHHHHHHHhhhcccccc--ccccEEE
Confidence 9999999 9999999999999999999999999999999999999999999997778999 7 99999
No 24
>PLN02439 arginine decarboxylase
Probab=99.92 E-value=2.1e-23 Score=193.76 Aligned_cols=230 Identities=17% Similarity=0.092 Sum_probs=170.4
Q ss_pred cccCC--CCCCcEEEcCCCCCHHHHHHHHH---CCCC--cc--CHHHHc------cccCCCCcEEEEEeeCCCCC-Cccc
Q 048797 2 LNALG--VSGKSVSLTVALRNENGLAEALG---SNFD--YA--SQAEIK------GKWHPRCDLLIRIKALDDCK-AVCP 65 (240)
Q Consensus 2 al~~G--~~~~~Ii~~gp~K~~~~l~~A~~---~gv~--~~--s~~EL~------~~~~~~~~v~lRi~~~~~~~-~~~~ 65 (240)
|+++| +++++|+++++.|++++|+.|+. .|+. ++ |++||+ ++.+...+|+||||+ ...+ ..|.
T Consensus 73 al~~~~~~~~~~ii~~NG~Kd~e~i~~Al~~~~lG~~~~IviDs~~EL~~I~~~a~~l~~~p~IglRi~~-~~~~~~~~~ 151 (559)
T PLN02439 73 AMSCLCKGSPDAFLICNGYKDAEYVSLALLARKLGLNTVIVLEQEEELDLVIEASQRLGVRPVIGVRAKL-RTKHSGHFG 151 (559)
T ss_pred HHHcCCCCCCCeEEECCCCCCHHHHHHHHHhhhCCCCeEEEECCHHHHHHHHHHHHHcCCCceEEEEEec-CCCCCCCcc
Confidence 56665 66889998888899999998853 4664 23 999999 344555789999999 5322 2232
Q ss_pred -CC-CCCCCCCCHHHHHHHHHHHHhCC-Cc-EEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc---
Q 048797 66 -QA-QDSKCGANLAEIGALLEAALASQ-LG-VVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH--- 138 (240)
Q Consensus 66 -~~-~~skFG~~~~~~~~~l~~a~~~~-l~-~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld--- 138 (240)
.+ ..||||++.+++.++++.+++.+ ++ +.|||||+|||+.|++.|.++++.+.+++.++ ++.|. ++++||
T Consensus 152 ~tgg~~sKFGl~~~ei~~~i~~lk~~~~l~~L~GLHfHiGSQi~d~~~~~~ai~e~~~l~~eL-~~~G~--~l~~lDIGG 228 (559)
T PLN02439 152 STSGEKGKFGLTATEIVRVVRKLRKEGMLDCLQLLHFHIGSQIPSTSLLKDGVSEAAQIYCEL-VRLGA--PMRVIDIGG 228 (559)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHH-HHcCC--CCcEEEecC
Confidence 22 26899999999999999999886 54 99999999999999999999999999999984 45688 899999
Q ss_pred ---------------------------hhHHHHhhhcC-----C-----CC--eeeeCceEEEEe----C----------
Q 048797 139 ---------------------------WRRGRADCHFG-----A-----GP--FPRDSAFTLATR----N---------- 165 (240)
Q Consensus 139 ---------------------------~i~~~l~~~~~-----~-----~p--~lva~a~~l~t~----n---------- 165 (240)
.|...+++++. . || |+||++|+|+++ .
T Consensus 229 GlgV~Y~g~~~~~~~~s~~ydl~eya~~Vv~~l~~~~~~~g~~~p~Ii~EpGR~lVA~agvLvt~V~~~~~~~~~~~~~~ 308 (559)
T PLN02439 229 GLGIDYDGSKSGSSDMSVAYSLEEYANAVVAAVRDVCDRKGVKHPVICSESGRALVSHHSVLIFEAVSASKRGVPAADDD 308 (559)
T ss_pred CccccCCCccccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCcchhhcceEEEEEEEEeecCCCCCCCcc
Confidence 22233333321 1 23 999999999998 1
Q ss_pred -----------------ce---------------------------------------------------e---------
Q 048797 166 -----------------CR---------------------------------------------------E--------- 168 (240)
Q Consensus 166 -----------------~~---------------------------------------------------~--------- 168 (240)
.+ -
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~da~~~~~~~~~~f~~g~~~l~~ra~~e~l~~~~~~~~~~~~~~~~y~ 388 (559)
T PLN02439 309 DQYLLLGLTEELRADYENLYAAADRGDYEECLLYADQLKQECVRLFKEGLLSLEQRAAVDGLCELVSKRVGASDPVATYH 388 (559)
T ss_pred ccHHHHHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCChheEEE
Confidence 11 0
Q ss_pred -------------------eeeccCCCCCCCeeeEEEeccCcCCCcccccCC------C--CCCC--C--CEEEEcCCCc
Q 048797 169 -------------------SSACSNRTCTGMIYNSTVFGPTLDAYDKLFTGH------P--ELQV--G--NWLVFSQIGA 217 (240)
Q Consensus 169 -------------------P~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~------p--~l~~--G--D~l~~~~~GA 217 (240)
|++...+....++...++++=||||.+.+-.-. | +++. | =+|.|..+||
T Consensus 389 ~NfS~fqslPD~Wai~Q~Fpi~Pl~rl~e~p~~~~~l~diTCDsDg~i~~~~~~~~~lplh~~~~~~~e~y~lg~Fl~GA 468 (559)
T PLN02439 389 INLSVFTSIPDFWAIGQLFPIVPLHRLDERPTVRGILSDLTCDSDGKIDKFIGGEGSLPLHELEKNGGGPYYLGMFLGGA 468 (559)
T ss_pred EeeehhccCccceeeCceeeeeeccccCCCcceeEEEeccccCCCCchhcccCCCCCCCCCCCCCCCCCCCEEEEEeccH
Confidence 333333223446788999999999999965431 3 5544 3 3477999999
Q ss_pred cccccCCCCCCCCCCCee
Q 048797 218 CTAVYGSGFKGFNTADIP 235 (240)
Q Consensus 218 Y~~~~s~~Fn~~~~p~~v 235 (240)
|.-.++..=|-|+.|..|
T Consensus 469 YQe~lg~~HnLfg~~~~v 486 (559)
T PLN02439 469 YQEALGSLHNLFGGPSVV 486 (559)
T ss_pred hHHHhccccccCCCCCEE
Confidence 999999988888888643
No 25
>PF00278 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; InterPro: IPR022643 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region []. This entry represents the C-terminal region of the Orn/DAP/Arg decarboxylases.; GO: 0003824 catalytic activity; PDB: 1TWI_B 1TUF_A 3MT1_A 3N2B_C 2O0T_A 1HKW_A 1HKV_A 3VAB_A 3N2O_A 7ODC_A ....
Probab=99.76 E-value=6.2e-19 Score=132.64 Aligned_cols=61 Identities=39% Similarity=0.675 Sum_probs=52.1
Q ss_pred CCCCeeeEEEeccCcCCCcccccCC--C-CCCCCCEEEEcCCCccccccCCCCCCCCCCCeeEEe
Q 048797 177 CTGMIYNSTVFGPTLDAYDKLFTGH--P-ELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTCL 238 (240)
Q Consensus 177 ~~~~~~~~~i~G~~C~~~D~l~~~~--p-~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~~i 238 (240)
...+..+++|+||||++.|++.++. | ++++||||+|+|||||+++++++||++++|+ ++||
T Consensus 53 ~~~~~~~~~i~GptC~~~D~i~~~~~lP~~l~~GD~l~f~~~GAYt~~~~~~Fn~~~~p~-~v~v 116 (116)
T PF00278_consen 53 DEEPCYPSTIWGPTCDSGDVIARDVMLPKELEVGDWLVFENMGAYTISLSSNFNGFPRPA-EVYV 116 (116)
T ss_dssp TTSTEEEEEEEESSSSTTSEEEEEEEEESTTTTT-EEEESS-SSSSGGGSBCGGGT-SCE-EEEE
T ss_pred cccCcEEEEEEECCcCCCceEeeeccCCCCCCCCCEEEEecCcccchhhCccccCCCCCC-EEEC
Confidence 3456789999999999999999877 9 9999999999999999999999999999996 5543
No 26
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=99.71 E-value=2.1e-16 Score=130.40 Aligned_cols=125 Identities=27% Similarity=0.388 Sum_probs=104.6
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCC-Ccc--CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCCCCCCC
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNF-DYA--SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQAQDSKC 72 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv-~~~--s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~~~skF 72 (240)
++++|+++++|+|.||.|++++++.+++.|. .++ |++||+ ++..+..+|+|||++ .. ..+||
T Consensus 52 ~~~~g~~~~~I~~~~~~~~~~~l~~~~~~~~~~~~ids~~~l~~l~~~~~~~~~~~~v~lrv~~-g~--------~~~R~ 122 (211)
T cd06808 52 LRAAGIPPEPILFLGPCKQVSELEDAAEQGVIVVTVDSLEELEKLEEAALKAGPPARVLLRIDT-GD--------ENGKF 122 (211)
T ss_pred HHHcCCCHHHEEEcCCCCCHHHHHHHHHcCCCEEEeCCHHHHHHHHHHHHHhCCCceEEEEEcC-CC--------CCCCC
Confidence 4568999999999999999999999999953 333 999998 234567899999998 32 12499
Q ss_pred CCCHHHHHHHHHHHHhC-CCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc
Q 048797 73 GANLAEIGALLEAALAS-QLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH 138 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~-~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld 138 (240)
|++++++.++++.+++. ++++.|+|+|.||+..+.+.+.+.++...++++. .++.|+ ++.++|
T Consensus 123 G~~~~e~~~~~~~i~~~~~l~l~Gl~~H~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~--~~~~i~ 186 (211)
T cd06808 123 GVRPEELKALLERAKELPHLRLVGLHTHFGSADEDYSPFVEALSRFVAALDQ-LGELGI--DLEQLS 186 (211)
T ss_pred CCCHHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHH-HHhcCC--CCCEEE
Confidence 99999999999988877 5999999999999988788899999999999988 455788 888887
No 27
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with activ
Probab=99.61 E-value=2.9e-14 Score=127.61 Aligned_cols=196 Identities=16% Similarity=0.200 Sum_probs=134.8
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCCCCCCCC
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCG 73 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG 73 (240)
++++|++++.++++++. .++++.++++++..+ |++||+ ++.....+|.|||++ . .+|||
T Consensus 67 ~~~~g~~~~i~~~~~~~--~~~~~~~~~~~i~~~vds~~~l~~l~~~a~~~~~~~~v~l~vdt-G----------~~R~G 133 (367)
T cd00430 67 LREAGITAPILVLGGTP--PEEAEEAIEYDLTPTVSSLEQAEALSAAAARLGKTLKVHLKIDT-G----------MGRLG 133 (367)
T ss_pred HHhcCCCCCEEEEeCCC--HHHHHHHHHcCCEEEECCHHHHHHHHHHHHHcCCceEEEEEEcC-C----------CCCCC
Confidence 35678887766666653 899999999998554 999998 233456789999987 3 14999
Q ss_pred CCHHHHHHHHHHHHh-CCCcEEEEEEeeCCCCCC-hHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc-----hhHHHHhh
Q 048797 74 ANLAEIGALLEAALA-SQLGVVGISFHIGSGATD-FGAFDGAISAAKAVFDAASARHGLTDQMRAKH-----WRRGRADC 146 (240)
Q Consensus 74 ~~~~~~~~~l~~a~~-~~l~~~Glh~H~gS~~~~-~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld-----~i~~~l~~ 146 (240)
++++|+.++++.+++ .++++.|+|+|.||+..+ .+.+.+.++...++.+.+. +.|+ ++.+++ .+...-+.
T Consensus 134 ~~~~e~~~~~~~i~~~~~l~~~Gi~~H~~~~~~~~~~~~~~q~~~~~~~~~~l~-~~g~--~~~~v~~g~s~~~~~~~~~ 210 (367)
T cd00430 134 FRPEEAEELLEALKALPGLELEGVFTHFATADEPDKAYTRRQLERFLEALAELE-EAGI--PPPLKHLANSAAILRFPEA 210 (367)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHH-hcCC--CCCcEEccCCHHHhCCccc
Confidence 999999999998877 489999999999998766 4667777888888877743 3577 777777 11000000
Q ss_pred hc----------CCCC-------eeeeCceEEEEe-----------------Cc---------eeeeeccCC---CCCC-
Q 048797 147 HF----------GAGP-------FPRDSAFTLATR-----------------NC---------RESSACSNR---TCTG- 179 (240)
Q Consensus 147 ~~----------~~~p-------~lva~a~~l~t~-----------------n~---------~~P~~~~~~---~~~~- 179 (240)
.+ +..| ....+++++.++ .+ ++|+-+... ....
T Consensus 211 ~~d~vR~G~~lyG~~~~~~~~~~~~l~~a~~l~a~Vi~vk~~~~G~~vgyg~~~~~~~~~~~a~~~~Gy~dg~~~~~~~~ 290 (367)
T cd00430 211 HFDMVRPGIALYGLYPSPEVKSPLGLKPVMSLKARVVQVKTVPAGEGVSYGRTYTAPRPTRIATLPVGYADGYPRALSNK 290 (367)
T ss_pred cCCeEeeCeEEECcCCCcccccccCCceeeEEEEEEEEEEEcCCCCcCCCCCeEEcCCCcEEEEEeeccccCcCcccCCC
Confidence 00 0001 245677777777 00 113322210 0111
Q ss_pred -----CeeeEEEeccCcCCCcccccCC---CCCCCCCEEEEcCC
Q 048797 180 -----MIYNSTVFGPTLDAYDKLFTGH---PELQVGNWLVFSQI 215 (240)
Q Consensus 180 -----~~~~~~i~G~~C~~~D~l~~~~---p~l~~GD~l~~~~~ 215 (240)
..+.+.|+|+.| +|.+.-+. |++++||.+.|.+-
T Consensus 291 ~~v~i~~~~~~ivG~v~--mD~~~vdv~~~~~~~~GD~v~l~g~ 332 (367)
T cd00430 291 GEVLIRGKRAPIVGRVC--MDQTMVDVTDIPDVKVGDEVVLFGR 332 (367)
T ss_pred cEEEECCEEcceeceee--ccEEEEECCCCCCCCCCCEEEEEcC
Confidence 347889999999 89998877 58999999988765
No 28
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism]
Probab=99.61 E-value=1.5e-14 Score=130.78 Aligned_cols=128 Identities=13% Similarity=0.173 Sum_probs=101.8
Q ss_pred CCCcEEEcCCCCCHHHHHHHH---HCCCCcc----CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCCC--CCCC
Q 048797 8 SGKSVSLTVALRNENGLAEAL---GSNFDYA----SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQAQ--DSKC 72 (240)
Q Consensus 8 ~~~~Ii~~gp~K~~~~l~~A~---~~gv~~~----s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~~--~skF 72 (240)
.+.-.|-.+-.|.++.|+.|+ +.|-+++ -++||+ ++.+...++++|+....-....|..++ .|||
T Consensus 160 ~~~~~IvCNGyKDrEyI~lAlig~kLGh~v~ivIEklsEl~~VleeA~~lgvkP~lGvR~RL~sqGsGkW~~SgG~ksKF 239 (652)
T COG1166 160 NPGSLIVCNGYKDREYIRLALIGEKLGHKVYIVIEKLSELDLVLEEAKQLGVKPRLGVRARLASQGSGKWQSSGGEKSKF 239 (652)
T ss_pred CCCCeEEecCcccHHHHHHHHHHHHhCCceEEEEechHHHHHHHHHHHHcCCCCcceeEEEEecccccccccccCchhcc
Confidence 455566666789999999995 4564443 777887 566777789999987222233565443 7899
Q ss_pred CCCHHHHHHHHHHHHhCCC--cEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc
Q 048797 73 GANLAEIGALLEAALASQL--GVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH 138 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l--~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld 138 (240)
|++..|+.+++++.++.++ .+.=+|||+|||+.|...++.+++.+.+++.+ .+++|. +++++|
T Consensus 240 GLsa~qvL~~v~~Lre~~~Ld~l~llHFHlGSQisnI~~ik~~~rEA~r~YvE-L~klGa--~i~~~d 304 (652)
T COG1166 240 GLSATQVLQVVERLREANLLDSLQLLHFHLGSQISNIRDIKTGVREAARFYVE-LRKLGA--NIKYFD 304 (652)
T ss_pred CCCHHHHHHHHHHHHhcchHHhhHHHhhhhcchhhhhHHHHHHHHHHHHHHHH-HHHcCC--CceEEe
Confidence 9999999999999888764 36679999999999999999999999999999 777899 999999
No 29
>TIGR00492 alr alanine racemase. This enzyme interconverts L-alanine and D-alanine. Its primary function is to generate D-alanine for cell wall formation. With D-alanine-D-alanine ligase, it makes up the D-alanine branch of the peptidoglycan biosynthetic route. It is a monomer with one pyridoxal phosphate per subunit. In E. coli, the ortholog is duplicated so that a second isozyme, DadX, is present. DadX, a paralog of the biosynthetic Alr, is induced by D- or L-alanine and is involved in catabolism.
Probab=99.06 E-value=3.2e-09 Score=95.18 Aligned_cols=120 Identities=13% Similarity=0.168 Sum_probs=90.0
Q ss_pred ccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCC
Q 048797 3 NALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGA 74 (240)
Q Consensus 3 l~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~ 74 (240)
.++|++++.++++++. .++++.+++.++... |.++++ ++.++..+|.|||++ . -+|||+
T Consensus 69 r~~G~~~~ilvl~~~~--~~~~~~~~~~~l~~~v~s~~~l~~l~~~a~~~~~~~~V~l~Vdt-G----------m~R~Gi 135 (367)
T TIGR00492 69 RKAGITAPILLLGGFF--AEDLKILAAWDLTTTVHSVEQLQALEEALLKEPKRLKVHLKIDT-G----------MNRLGV 135 (367)
T ss_pred HhcCCCCCEEEEeCCC--HHHHHHHHHcCCEEEECCHHHHHHHHHHHHHcCCceEEEEEeeC-C----------CCCCCC
Confidence 4578887777776654 889999999998554 998887 234556899999998 3 139999
Q ss_pred CHHHHHHHHHHHHhC-CCc-EEEEEEeeCCCC-CChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc
Q 048797 75 NLAEIGALLEAALAS-QLG-VVGISFHIGSGA-TDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH 138 (240)
Q Consensus 75 ~~~~~~~~l~~a~~~-~l~-~~Glh~H~gS~~-~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld 138 (240)
+++|+.++++.+++. +++ +.|+|+|.++.. .+.+.+.+.++...++.+.+ ++.|+ ++.+++
T Consensus 136 ~~~e~~~~~~~i~~~~~l~~l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l-~~~g~--~~~~~~ 199 (367)
T TIGR00492 136 KPDEAALFVQKLRQLKKFLELEGIFSHFATADEPKTGTTQKQIERFNSFLEGL-KQQNI--EPPFRH 199 (367)
T ss_pred ChHHHHHHHHHHHhCCCCCCceEEEcCCCCCCCCCChHHHHHHHHHHHHHHHH-hhcCC--CCCcEE
Confidence 999988888876664 799 999999999864 23346677777777777774 33477 666665
No 30
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=99.05 E-value=3.6e-09 Score=88.39 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=88.0
Q ss_pred EEEcCCCCCHHHHHHHHH-CCCCcc--CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHH
Q 048797 12 VSLTVALRNENGLAEALG-SNFDYA--SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGAL 82 (240)
Q Consensus 12 Ii~~gp~K~~~~l~~A~~-~gv~~~--s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~ 82 (240)
+++-|+. ..++++.+++ .++... |.++++ ++.++..+|.|||++ .. ..+|||++++++.++
T Consensus 73 ~~llg~~-~~~~~~~~~~~~~~~~~v~s~~~l~~l~~~a~~~~~~~~v~lkvdt-G~--------~~~R~G~~~~~~~~~ 142 (222)
T cd00635 73 WHFIGHL-QTNKVKYAVRLFDLIHSVDSLKLAEELNKRAEKEGRVLDVLVQVNI-GG--------EESKSGVAPEELEEL 142 (222)
T ss_pred EEEECcc-ccccHHHHHhhCCEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEEec-CC--------CCCCCCCCHHHHHHH
Confidence 3443543 3467777776 475544 888876 235567899999998 31 023999999999999
Q ss_pred HHHHHhC-CCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc
Q 048797 83 LEAALAS-QLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH 138 (240)
Q Consensus 83 l~~a~~~-~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld 138 (240)
++.+++. ++++.|+|+| +|+..+++.+.++.+.+.++.+.+.+..|+ .+++||
T Consensus 143 ~~~i~~~~~l~~~Gi~sh-~s~~~~~~~~~~~~~~~~~~~~~l~~~~g~--~~~~is 196 (222)
T cd00635 143 LEEIAALPNLRIRGLMTI-APLTEDPEEVRPYFRELRELRDELGAKGGV--NLKELS 196 (222)
T ss_pred HHHHHcCCCCcEEEEEEE-CCCCCChHHHHHHHHHHHHHHHHHHHhcCC--CCCEEE
Confidence 9888775 7999999999 677788899999999999999996666678 899998
No 31
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=99.00 E-value=1.7e-09 Score=96.43 Aligned_cols=120 Identities=21% Similarity=0.164 Sum_probs=88.2
Q ss_pred ccCCCCCCcEEEc----CCCCCHHHHHHHHHCCCCcc--CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCCCCC
Q 048797 3 NALGVSGKSVSLT----VALRNENGLAEALGSNFDYA--SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQAQDS 70 (240)
Q Consensus 3 l~~G~~~~~Ii~~----gp~K~~~~l~~A~~~gv~~~--s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~~~s 70 (240)
+++|++ +|.+. ++.|..+.++.+.+.++.++ |.++++ ++.+...+|.|||++ +. .
T Consensus 71 ~~~G~~--~ili~~~~~~~~~~~~~~~~~~~~~i~~~vDs~~~l~~l~~~a~~~~~~~~V~l~vd~-G~--------~-- 137 (358)
T cd06819 71 AAAGIR--DILITNEVVGPAKIARLAALARRAPLIVCVDHPDNVRALAAAAVEAGVRLDVLVEIDV-GQ--------G-- 137 (358)
T ss_pred HHCCCC--eEEEECCcCCHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHhcCCceEEEEEECC-CC--------C--
Confidence 457875 47777 44555666777888887554 999888 234556889999987 31 2
Q ss_pred CCCCC-HHHHHHHHHHHHhC-CCcEEEEEEeeCCCC------CChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc
Q 048797 71 KCGAN-LAEIGALLEAALAS-QLGVVGISFHIGSGA------TDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH 138 (240)
Q Consensus 71 kFG~~-~~~~~~~l~~a~~~-~l~~~Glh~H~gS~~------~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld 138 (240)
|||+. .+++.++++.+++. ++++.|+|||.|++. .+.+.+.+.++.+.++.+. .++.|+ ++.+++
T Consensus 138 R~Gv~~~~~~~~l~~~i~~~~~l~l~Gi~~y~G~~~h~~~~~~~~~~~~~~~~~~~~~~~~-l~~~g~--~~~~vs 210 (358)
T cd06819 138 RCGVPPGEAALALARTIAALPGLRFAGLQAYHGHLQHIRDYEERRAAIAEAAEALQATRDA-LEAAGL--PCEIVT 210 (358)
T ss_pred cCCCCChHHHHHHHHHHHhCCCceEeEEEeeCchhccCCCHHHHHHHHHHHHHHHHHHHHH-HHhCCC--CCCEEe
Confidence 99998 67899999888775 899999999998864 2334567777777777777 345688 777777
No 32
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=98.99 E-value=4.4e-09 Score=94.44 Aligned_cols=120 Identities=16% Similarity=0.180 Sum_probs=82.7
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHH---CCCC--cc--CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCCC
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALG---SNFD--YA--SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQAQ 68 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~---~gv~--~~--s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~~ 68 (240)
++++|++ +|+|..| +++++++.+.+ .|+. ++ |.++|+ ++.+...+|.|||++ . ..
T Consensus 69 ~~~aG~~--~il~~~~-~~~~~~~~~~~l~~~~~~~~~~vds~~~l~~l~~~a~~~~~~~~V~l~vd~-G--------~~ 136 (374)
T cd06812 69 FAEAGYR--DILYAVG-IAPAKLPRVLALRRQGVNLTILLDSVEQAQAVAAFSRQHGVRFPVLIEIDC-D--------GH 136 (374)
T ss_pred HHHcCCC--eeEEeCC-CCHHHHHHHHHHHhcCCceEEEECCHHHHHHHHHHHHHcCCceEEEEEeCC-C--------CC
Confidence 3567885 6888776 57776665544 4543 33 999998 234556889999987 3 23
Q ss_pred CCCCCCCHH-H-HHHHHHHHHhCCCcEEEEEEeeCCC--CCChHHHHHHHHH----HHHHHHHHHHhCCCCCCCCccc
Q 048797 69 DSKCGANLA-E-IGALLEAALASQLGVVGISFHIGSG--ATDFGAFDGAISA----AKAVFDAASARHGLTDQMRAKH 138 (240)
Q Consensus 69 ~skFG~~~~-~-~~~~l~~a~~~~l~~~Glh~H~gS~--~~~~~~~~~~i~~----~~~~~~~l~~~~g~~~~~~~ld 138 (240)
|||++++ + +.++.+.++..++++.|+|+|.||+ +.+.+.+.+..+. +.++++. .++.|+ ++.++|
T Consensus 137 --R~Gv~~~~~~~~~l~~~i~~~~l~l~Gi~~H~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~-l~~~g~--~~~~v~ 209 (374)
T cd06812 137 --RGGIAPDSDALLEIARILHDGGAELRGVLTHAGESYACRTPEALAAAAEQERAAAVRAAER-LRAAGL--PCPVVS 209 (374)
T ss_pred --cCCCCCCcHHHHHHHHHHhcCCceEEEEEccCCcccCCCCHHHHHHHHHHHHHHHHHHHHH-HHhCCC--CCCEEe
Confidence 9999875 2 5666665554689999999999996 4677766554443 5566666 334588 888888
No 33
>PRK13340 alanine racemase; Reviewed
Probab=98.91 E-value=2.2e-08 Score=90.97 Aligned_cols=115 Identities=19% Similarity=0.254 Sum_probs=80.6
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCCCCCCCC
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCG 73 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG 73 (240)
++++|+++..++|+++ +.++++.++++++.++ |.++++ ++.++..+|.|||++ . +.+|||
T Consensus 106 lr~~G~~~~ilvl~~~--~~~el~~~~~~~l~~~v~s~~~l~~l~~~a~~~~~~~~V~LkVDt-~---------Gm~R~G 173 (406)
T PRK13340 106 VRELGFTGQLLRVRSA--SPAEIEQALRYDLEELIGDDEQAKLLAAIAKKNGKPIDIHLALNS-G---------GMSRNG 173 (406)
T ss_pred HHhCCCCCCEEEECCC--CHHHHHHHHHcCCEEEECCHHHHHHHHHHHHHcCCceEEEEEECC-C---------CCCCcC
Confidence 4568999999999887 7899999999998655 998888 234556789999997 2 234999
Q ss_pred CCHHHHHHHHH--HHHh-CCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 74 ANLAEIGALLE--AALA-SQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 74 ~~~~~~~~~l~--~a~~-~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+++++..++.. ..++ .++++.|+|+|.++. |.+...+.++...++++.+.++.|+
T Consensus 174 ~~~~e~~~~~~~~~l~~~~~l~l~Gi~tH~a~a--d~~~~~~q~~~f~~~~~~l~~~~g~ 231 (406)
T PRK13340 174 LDMSTARGKWEALRIATLPSLGIVGIMTHFPNE--DEDEVRWKLAQFKEQTAWLIGEAGL 231 (406)
T ss_pred CChhhhhHHHHHHHHHhCCCccEEEEEEECCCC--CcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99875433222 3333 589999999999974 3333444555555555553344455
No 34
>PRK00053 alr alanine racemase; Reviewed
Probab=98.85 E-value=5.5e-08 Score=87.06 Aligned_cols=110 Identities=17% Similarity=0.215 Sum_probs=83.8
Q ss_pred ccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc--cc--cCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCH
Q 048797 3 NALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK--GK--WHPRCDLLIRIKALDDCKAVCPQAQDSKCGANL 76 (240)
Q Consensus 3 l~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~--~~--~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~ 76 (240)
.++|++ .+|++.++..+.++++.+++.++... |.++++ .+ .++..+|.|||++ . .+|||+++
T Consensus 70 ~~~G~~-~~il~l~~~~~~~e~~~~~~~~i~~~v~s~~~l~~l~~~~~~~~~~V~l~vdt-G----------~~R~Gi~~ 137 (363)
T PRK00053 70 REAGIT-APILILGGFFPAEDLPLIIAYNLTTAVHSLEQLEALEKAELGKPLKVHLKIDT-G----------MHRLGVRP 137 (363)
T ss_pred HhcCCC-CCEEEEeCCCCHHHHHHHHHcCCEEEECCHHHHHHHHHhccCCCeEEEEEecC-C----------CCcCCCCH
Confidence 356775 57888888778899999999998554 998888 22 3445789999997 3 13999999
Q ss_pred HHHHHHHHHHHhC-CCcEEEEEEeeCCCC-CChHHHHHHHHHHHHHHHHH
Q 048797 77 AEIGALLEAALAS-QLGVVGISFHIGSGA-TDFGAFDGAISAAKAVFDAA 124 (240)
Q Consensus 77 ~~~~~~l~~a~~~-~l~~~Glh~H~gS~~-~~~~~~~~~i~~~~~~~~~l 124 (240)
+++.++++.++++ ++++.|+|.|.++.. .+.+...+.++...++.+.+
T Consensus 138 ~e~~~~~~~i~~~~~l~l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l 187 (363)
T PRK00053 138 EEAEAALERLLACPNVRLEGIFSHFATADEPDNSYTEQQLNRFEAALAGL 187 (363)
T ss_pred HHHHHHHHHHHhCCCCceEEEEecCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 9999999887774 899999999999864 34445566677666666663
No 35
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=98.74 E-value=7.5e-08 Score=86.80 Aligned_cols=127 Identities=17% Similarity=0.144 Sum_probs=89.0
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCC-cc--CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCCCCCCC
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFD-YA--SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQAQDSKC 72 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~-~~--s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~~~skF 72 (240)
++++|+++.+|. ....++.++++.+++.++. +. |+++++ ++.++.++|.|||++ ... ....+. +.
T Consensus 92 lr~aGi~~~~I~-~l~~~~~~el~~~v~~~~~~i~V~s~~~l~~L~~~A~~~g~~~~V~LrVdt-g~~--ri~~g~--~~ 165 (382)
T cd06811 92 LHEAGLPLGHVG-HLVQIPRHQVPAVLAMRPEVITVYSLEKAREISDAAVELGRVQDVLLRVYG-DED--TLYPGQ--EG 165 (382)
T ss_pred HHHcCCCHHhEE-EccCCCHHHHHHHHHcCCCEEEECCHHHHHHHHHHHHHcCCceEEEEEEEC-CCC--ccccCc--cc
Confidence 356799888887 5556689999999999964 33 888887 235567899999998 421 111233 67
Q ss_pred CCCHHHHHHHHHHHHhC-CCcEEEEEEeeCCCCCChH----HHHHHHHHHHHHHHHHHHhCCCCCCCCccc
Q 048797 73 GANLAEIGALLEAALAS-QLGVVGISFHIGSGATDFG----AFDGAISAAKAVFDAASARHGLTDQMRAKH 138 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~-~l~~~Glh~H~gS~~~~~~----~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld 138 (240)
|++++++.++++.++++ ++++.|+|.| ++...|.+ .+.+.++...++.+. .++.|+ .+++++
T Consensus 166 G~~~~e~~~~~~~i~~l~~l~l~Githf-~~~~~d~~~~~~~~~~~~~~l~~~~~~-l~~~g~--~~~~is 232 (382)
T cd06811 166 GFPLEELPAVLAAIKALPGIRIAGLTSF-PCFLYDEEQGDIAPTPNLFTLLKAKEL-LEKRGI--EILQLN 232 (382)
T ss_pred eecHHHHHHHHHHHHcCCCcEEEeEccc-chhhcccCcccccHHHHHHHHHHHHHH-HHHCCC--CCeEEc
Confidence 99999999999888774 8999999777 44322322 245566666666666 444577 777776
No 36
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=98.74 E-value=1.2e-07 Score=84.63 Aligned_cols=90 Identities=12% Similarity=0.154 Sum_probs=73.1
Q ss_pred ccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc--cc--cCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCH
Q 048797 3 NALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK--GK--WHPRCDLLIRIKALDDCKAVCPQAQDSKCGANL 76 (240)
Q Consensus 3 l~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~--~~--~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~ 76 (240)
.++|++++.+++++|.++ ++++.+.+.++... |.++++ .+ ..+..+|.|+|++ . -+|||+.+
T Consensus 65 r~~G~~~~ilvl~~~~~~-~~~~~~~~~~l~~~v~s~~~l~~l~~~~~~~~~~v~l~vDt-G----------m~R~Gi~~ 132 (354)
T cd06827 65 REAGITKPILLLEGFFSA-DELPLAAEYNLWTVVHSEEQLEWLEQAALSKPLNVWLKLDS-G----------MHRLGFSP 132 (354)
T ss_pred HhCCCCCCEEEEECCCCH-HHHHHHHHcCCEEEECCHHHHHHHHHhcCCCCeEEEEEeeC-C----------cCCCCCCH
Confidence 467999988899898666 88999999998655 999888 22 3456789999998 3 13999999
Q ss_pred HHHHHHHHHHHh-CCCcEEEEEEeeCCCC
Q 048797 77 AEIGALLEAALA-SQLGVVGISFHIGSGA 104 (240)
Q Consensus 77 ~~~~~~l~~a~~-~~l~~~Glh~H~gS~~ 104 (240)
+|+.++++.+++ .++++.|+|.|.++..
T Consensus 133 ~e~~~~~~~i~~~~~l~l~Gi~tH~a~ad 161 (354)
T cd06827 133 EEYAAAYQRLKASPNVASIVLMTHFACAD 161 (354)
T ss_pred HHHHHHHHHHHhCCCceEEEEEeeccCCC
Confidence 999898887776 5899999999999864
No 37
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties
Probab=98.71 E-value=1.4e-07 Score=85.10 Aligned_cols=112 Identities=23% Similarity=0.262 Sum_probs=78.4
Q ss_pred ccCCCCCCcEEEcCC--CCCHH-HHHHHHHC--CCC--cc--CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCC
Q 048797 3 NALGVSGKSVSLTVA--LRNEN-GLAEALGS--NFD--YA--SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQA 67 (240)
Q Consensus 3 l~~G~~~~~Ii~~gp--~K~~~-~l~~A~~~--gv~--~~--s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~ 67 (240)
.+.|++ +|+|++| .|+.. +|..+++. ++. ++ |.++++ ++.++..+|+||||+ + .
T Consensus 67 ~~~G~~--~il~~~~~~~~~~~~~l~~l~~~~~~~~i~~~vds~~~l~~L~~~a~~~g~~~~v~i~vn~-g--------~ 135 (382)
T cd06818 67 LAFGVR--RVLLANQLVGKANLRRLAALLAADPDFEFFCLVDSVDNVRALAAFFAALERPLNVLIELGV-P--------G 135 (382)
T ss_pred HHcCCC--eEEEecCcCChHHHHHHHHhhhcCCCCCEEEEECCHHHHHHHHHHHHhcCCceEEEEEECC-C--------C
Confidence 346774 7998855 44444 47778753 443 33 888887 234566889999997 3 1
Q ss_pred CCCCCCCC-HHHHHHHHHHHHhC-CCcEEEEEEeeCCC-----CCChHHHHHHHHHHHHHHHHHHHh
Q 048797 68 QDSKCGAN-LAEIGALLEAALAS-QLGVVGISFHIGSG-----ATDFGAFDGAISAAKAVFDAASAR 127 (240)
Q Consensus 68 ~~skFG~~-~~~~~~~l~~a~~~-~l~~~Glh~H~gS~-----~~~~~~~~~~i~~~~~~~~~l~~~ 127 (240)
. |.|+. .+++.++++.+.+. ++++.|||+|.|++ ..+.+...+..+.+.++.+.+.++
T Consensus 136 ~--R~G~~~~~~~~~l~~~i~~~~~l~l~Gi~~~~G~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 200 (382)
T cd06818 136 G--RTGVRTEAEALALADAIAASPALRLAGVEGYEGVAAHDDSEETLAAVRAFLARAVDLARRLAER 200 (382)
T ss_pred C--CCCCCCHHHHHHHHHHHHcCCCceEeEEEeeccccccCCChhHHHHHHHHHHHHHHHHHHHHHc
Confidence 2 89996 57788888877764 79999999999997 244555666677777777775444
No 38
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=98.65 E-value=2.7e-07 Score=83.44 Aligned_cols=96 Identities=17% Similarity=0.076 Sum_probs=69.2
Q ss_pred ccCCCCCCcEEEcCCCCCHHHHHHHHHC-----CCCcc--CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCC-C
Q 048797 3 NALGVSGKSVSLTVALRNENGLAEALGS-----NFDYA--SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQA-Q 68 (240)
Q Consensus 3 l~~G~~~~~Ii~~gp~K~~~~l~~A~~~-----gv~~~--s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~-~ 68 (240)
.++|+ ++|++.+|.+++++++.+.+. .+.++ |.++|+ ++.....+|.|||++ .-.-....++ .
T Consensus 74 ~~aG~--~~ILl~~p~~~~~~l~~~~~~~~~~~~i~~~Vds~~~l~~l~~~a~~~~~~~~V~l~IDt-Gm~R~G~~~G~~ 150 (388)
T cd06813 74 ARQGF--DDILVAYPSVDRAALRELAADPKLGATITLMVDSVEHLDLLDAVAAPMRVEVRVCIDIDA-SLRFGGLHFGVR 150 (388)
T ss_pred HHcCC--CeEEEeCCCCCHHHHHHHHhhhccCCeEEEEEcCHHHHHHHHHHHHhcCCceEEEEEECC-CccccccccCcC
Confidence 45688 579999999999999999875 44443 999888 234566889999998 4221111112 1
Q ss_pred CCCCCCCHHHHHHHHHHHHhC-CCcEEEEEEeeCC
Q 048797 69 DSKCGANLAEIGALLEAALAS-QLGVVGISFHIGS 102 (240)
Q Consensus 69 ~skFG~~~~~~~~~l~~a~~~-~l~~~Glh~H~gS 102 (240)
.|+|+ +.+++.++++.+.+. ++++.|+|.|.|+
T Consensus 151 Rs~~~-~~~~~~~l~~~i~~~~~l~l~Gi~th~g~ 184 (388)
T cd06813 151 RSPLH-TPAQALALAKAIAARPGLRLVGLMGYEAQ 184 (388)
T ss_pred CCCCC-CHHHHHHHHHHHhcCCCcEEEEEEEEchh
Confidence 44666 578888888877654 7999999999776
No 39
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=98.58 E-value=5.2e-07 Score=80.42 Aligned_cols=120 Identities=16% Similarity=0.145 Sum_probs=83.9
Q ss_pred ccCCCCCCcEEEcCCCCCHHH---HHHHHHCC-CCcc--CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCCCCC
Q 048797 3 NALGVSGKSVSLTVALRNENG---LAEALGSN-FDYA--SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQAQDS 70 (240)
Q Consensus 3 l~~G~~~~~Ii~~gp~K~~~~---l~~A~~~g-v~~~--s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~~~s 70 (240)
.+.|++ +|.+..|...... +..+.+.. +.++ |.++++ ++.++..+|+|||++ . ..
T Consensus 67 ~~~G~~--~i~i~~~~~~~~~~~~l~~l~~~~~~~~~vds~~~l~~L~~~a~~~~~~~~V~l~vd~-G--------~~-- 133 (353)
T cd06820 67 ADAGLS--DIFIAYPIVGRQKLERLRALAERVTLSVGVDSAEVARGLAEVAEGAGRPLEVLVEVDS-G--------MN-- 133 (353)
T ss_pred HHCCCC--eEEEECCcCCHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHhcCCeeEEEEEECC-C--------CC--
Confidence 456874 5888777654443 44444333 3333 888887 234566889999998 3 13
Q ss_pred CCCCCH-HHHHHHHHHHHh-CCCcEEEEEEeeCCCCCC---hHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc
Q 048797 71 KCGANL-AEIGALLEAALA-SQLGVVGISFHIGSGATD---FGAFDGAISAAKAVFDAASARHGLTDQMRAKH 138 (240)
Q Consensus 71 kFG~~~-~~~~~~l~~a~~-~~l~~~Glh~H~gS~~~~---~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld 138 (240)
|||+.+ +++.++++.+.+ .++++.|+|+|.|+.... .+.+.+.++.+.++.+. .++.|+ .+.+++
T Consensus 134 R~Gv~~~~~~~~l~~~i~~~~~l~l~Gi~~h~g~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~g~--~~~~vs 203 (353)
T cd06820 134 RCGVQTPEDAVALARAIASAPGLRFRGIFTYPGHSYAPGALEEAAADEAEALLAAAGI-LEEAGL--EPPVVS 203 (353)
T ss_pred cCCCCChHHHHHHHHHHHhCCCcEEEEEEecCCccCChHHHHHHHHHHHHHHHHHHHH-HHhcCC--CCCEEE
Confidence 999998 888899888776 489999999999986421 23466667777777777 444688 788887
No 40
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase. D-threonine aldolase (D-TA, EC 4.3.1.18) reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Its activity is present in several genera of bacteria but not in fungi. It requires PLP and a divalent cation such as Co2+, Ni2+, Mn2+, or Mg2+ as cofactors for catalytic activity and thermal stability. Members of this subfamily show similarity to bacterial alanine racemase (AR), a fold type III PLP-dependent enzyme which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that
Probab=98.45 E-value=1.9e-06 Score=77.04 Aligned_cols=120 Identities=21% Similarity=0.174 Sum_probs=80.3
Q ss_pred ccCCCCCCcEEEcCCC---CCHHHHHHHHHCC---CCcc--CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCCC
Q 048797 3 NALGVSGKSVSLTVAL---RNENGLAEALGSN---FDYA--SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQAQ 68 (240)
Q Consensus 3 l~~G~~~~~Ii~~gp~---K~~~~l~~A~~~g---v~~~--s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~~ 68 (240)
.+.|++ +|++..|. +..+.++.+.+.. +.+. |.++++ ++.+...+|.|||++ . ..
T Consensus 72 ~~~G~~--~ill~~~~~~~~~~~~~~l~~~~~~~~~~~~Vds~~~l~~l~~~a~~~~~~~~V~l~Vd~-G--------~~ 140 (361)
T cd06821 72 AEAGAP--DVLLAYPLVGPNIERFLELAKKYPGTRFSALVDDLEAAEALSAAAGSAGLTLSVLLDVNT-G--------MN 140 (361)
T ss_pred HHcCCC--eEEEeCCCCHHHHHHHHHHHhhCCCCeEEEEECCHHHHHHHHHHHHHcCCeEEEEEEeCC-C--------CC
Confidence 456875 56555432 2333445454432 2222 888887 233556789999998 3 13
Q ss_pred CCCCCCCHH-HHHHHHHHHHh-CCCcEEEEEEeeCCCC-CC----hHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc
Q 048797 69 DSKCGANLA-EIGALLEAALA-SQLGVVGISFHIGSGA-TD----FGAFDGAISAAKAVFDAASARHGLTDQMRAKH 138 (240)
Q Consensus 69 ~skFG~~~~-~~~~~l~~a~~-~~l~~~Glh~H~gS~~-~~----~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld 138 (240)
|||++++ ++.++++.+++ .++++.|+|+|.|+.. .+ .+.+.+.++.+.++.+. .++.|+ .+.+++
T Consensus 141 --R~Gv~~~~~~~~l~~~i~~~~~l~l~Gl~~~~gh~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~g~--~~~~v~ 212 (361)
T cd06821 141 --RTGIAPGEDAEELYRAIATLPGLVLAGLHAYDGHHRNTDLAEREAAADAAYKPVLALREA-LEAAGL--PVPELV 212 (361)
T ss_pred --cCCCCChHHHHHHHHHHhhCCCceEeeEEeecCcccCCCHHHHHHHHHHHHHHHHHHHHH-HHHCCC--CCCEEE
Confidence 9999987 78899888776 4899999999998853 34 34566777777777777 444577 777777
No 41
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=98.43 E-value=5.3e-06 Score=69.40 Aligned_cols=110 Identities=16% Similarity=0.139 Sum_probs=74.7
Q ss_pred CCCCCHHHHHHHHHCCCCcc--CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHH
Q 048797 16 VALRNENGLAEALGSNFDYA--SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAAL 87 (240)
Q Consensus 16 gp~K~~~~l~~A~~~gv~~~--s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~ 87 (240)
|+.-+.++.+.+.++++... |.+.++ .+.+...+|.|.|+. +. +-+|||++++++.++++.+.
T Consensus 79 g~~~~~~~~~~~~~~~~~~~I~s~~~~~~l~~~a~~~g~~~~v~l~id~-~~--------Gm~R~Gi~~~~~~~~~~~i~ 149 (224)
T cd06824 79 GPIQSNKTKLIAENFDWVHSVDRLKIAKRLNDQRPAGLPPLNVCIQVNI-SG--------EDSKSGVAPEDAAELAEAIS 149 (224)
T ss_pred cCchhhhHHHHHhhCCEEEecCCHHHHHHHHHHHHhcCCCCcEEEEEEc-CC--------CCCCCCCCHHHHHHHHHHHh
Confidence 77655566777888886543 777776 233455788999988 41 12399999999999888776
Q ss_pred hC-CCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc
Q 048797 88 AS-QLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH 138 (240)
Q Consensus 88 ~~-~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld 138 (240)
.. ++++.|+|.|. ++..+.+...+..+.+.++.+.+ +..|+ .+.+++
T Consensus 150 ~~~~l~l~Gl~tH~-a~~~~~~~q~~~f~~~~~~~~~l-~~~~~--~~~~is 197 (224)
T cd06824 150 QLPNLRLRGLMAIP-APTDDEAAQRAAFKRLRQLFDQL-KKQYP--DLDTLS 197 (224)
T ss_pred cCCCCcEEEEEEeC-CCCCChHHHHHHHHHHHHHHHHH-HhhCC--CCCEEe
Confidence 64 79999999995 54556555555555555555553 33356 666666
No 42
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2. This subfamily is composed of bacterial alanine racemases (EC 5.1.1.1) with similarity to Yersinia pestis and Vibrio cholerae alanine racemase (AR) 2. ARs catalyze the interconversion between L- and D-alanine, an essential component of the peptidoglycan layer of bacterial cell walls. These proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=98.42 E-value=4.9e-06 Score=74.62 Aligned_cols=114 Identities=15% Similarity=0.132 Sum_probs=77.7
Q ss_pred ccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCC
Q 048797 3 NALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGA 74 (240)
Q Consensus 3 l~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~ 74 (240)
.++|+++.-++|. .+++++++.++++++..+ |+++++ .+.++..+|.|||++ . +-+|||+
T Consensus 68 r~~Gi~~~ilvl~--~~~~~e~~~~i~~~i~~~v~s~~~l~~l~~~a~~~~~~~~v~LkvDt-~---------Gm~R~Gi 135 (365)
T cd06826 68 REAGFTGKILRVR--TATPSEIEDALAYNIEELIGSLDQAEQIDSLAKRHGKTLPVHLALNS-G---------GMSRNGL 135 (365)
T ss_pred HhcCCCCCEEEEe--CCCHHHHHHHHHcCCEEEECCHHHHHHHHHHHHHcCCceEEEEEECC-C---------CCCCCCC
Confidence 4679988888884 468899999999998765 898887 234567889999987 2 1139999
Q ss_pred CHHH--HHHHHHHHHh-CCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 75 NLAE--IGALLEAALA-SQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 75 ~~~~--~~~~l~~a~~-~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
++++ +.++++.+.+ .++++.|++.|.++... . ...+.++...++++.+.++.|+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~l~l~Gi~tH~a~ad~-~-~~~~q~~~f~~~~~~~~~~~g~ 192 (365)
T cd06826 136 ELSTAQGKEDAVAIATLPNLKIVGIMTHFPVEDE-D-DVRAKLARFNEDTAWLISNAKL 192 (365)
T ss_pred CcchhhHHHHHHHHHHCCCCcEEEEEEeCCCCCc-h-HHHHHHHHHHHHHHHHHHhcCC
Confidence 9753 4555555554 47999999999888542 2 2233444444544443243455
No 43
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=98.39 E-value=3e-06 Score=75.26 Aligned_cols=119 Identities=21% Similarity=0.245 Sum_probs=77.0
Q ss_pred ccCCCCCCcEEEcCCCCCHHHHHHHH---H--CCCCcc--CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCCCC
Q 048797 3 NALGVSGKSVSLTVALRNENGLAEAL---G--SNFDYA--SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQAQD 69 (240)
Q Consensus 3 l~~G~~~~~Ii~~gp~K~~~~l~~A~---~--~gv~~~--s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~~~ 69 (240)
.+.|+ ++|++.+|.++.+.++.+. + .++.+. |.++++ .+.+...+|.|+|+. . ..
T Consensus 56 ~~~G~--~~Ili~~~~~~~~~~~~~~~l~~~~~~i~~~Vds~~~l~~l~~~a~~~~~~~~V~l~ID~-G--------~~- 123 (345)
T cd07376 56 AEAGV--KDILMAYPLVGPAAIARLAGLLRQEAEFHVLVDSPEALAALAAFAAAHGVRLRVMLEVDV-G--------GH- 123 (345)
T ss_pred HHcCC--CeEEEECCcCCHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCeeEEEEEeCC-C--------CC-
Confidence 35677 6899999998777776665 3 455443 888887 234556789999987 2 13
Q ss_pred CCCCCCHHHHHHHHHHH---HhCCCcEEEEEEeeCCCCCC------hHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc
Q 048797 70 SKCGANLAEIGALLEAA---LASQLGVVGISFHIGSGATD------FGAFDGAISAAKAVFDAASARHGLTDQMRAKH 138 (240)
Q Consensus 70 skFG~~~~~~~~~l~~a---~~~~l~~~Glh~H~gS~~~~------~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld 138 (240)
|+|+++++...+.... +..++++.|+|+|.|..... .+.+.+.++...++++.+ + .|+ ++.+++
T Consensus 124 -R~Gv~~~~~~~l~~~~~i~~~~~l~l~Gl~~h~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~-~g~--~~~~vs 196 (345)
T cd07376 124 -RSGVRPEEAAALALADAVQASPGLRLAGVMAYEGHIYGAGGAREGAQARDQAVAAVRAAAAAA-E-RGL--ACPTVS 196 (345)
T ss_pred -cCCCCCcHHHHHHHHHHhccCCCeEEeEEEeecchhccCCCHHHHHHHHHHHHHHHHHHHHHH-H-cCC--CCCEEE
Confidence 8999876544433322 23479999999999964211 123455566655655552 2 477 666776
No 44
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins containing this domain are found in both prokaryotes and eukaryotes [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strands. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel. This domain is also found in the PROSC (proline synthetase co-transcribed bacterial homolog) family of proteins, which are not known to have alanine racemase activity.; PDB: 3KW3_A 1B54_A 1CT5_A 2ODO_B 2RJG_A 3B8V_D 2RJH_D 3B8T_D 3B8W_B 3B8U_A ....
Probab=98.00 E-value=4e-05 Score=63.46 Aligned_cols=113 Identities=15% Similarity=0.152 Sum_probs=83.2
Q ss_pred CcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHH
Q 048797 10 KSVSLTVALRNENGLAEALGSNFDYA--SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGA 81 (240)
Q Consensus 10 ~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~ 81 (240)
.+|++-+| -..++++.++++++... |.+.++ .+.+...+|.|.|+. + .. |+|+.++++.+
T Consensus 66 ~~il~l~~-~~~~~~~~~~~~~~~~~v~s~~~~~~l~~~~~~~~~~~~v~l~vdt-G--------~~--R~G~~~~~~~~ 133 (218)
T PF01168_consen 66 APILVLGP-IPPEELEELVEYNIIPTVDSLEQLEALSKAAKKQGKPLKVHLKVDT-G--------MG--RLGVRPEELEE 133 (218)
T ss_dssp SEEEEESE-STGGGHHHHHHTTEEEEE-SHHHHHHHHHHHHHHTSTEEEEEEBES-S--------SS--SSSBECHHHHH
T ss_pred CceEEEcC-CChhhHHHHhhCcEEEEEchhhHHHHHHHHHHHcCCceEEEEeecc-c--------cc--ccCCCHHHHHH
Confidence 67877777 66788988888776554 888887 234677899999998 3 12 99999999999
Q ss_pred HHHHHHh-CCCcEEEEEEeeCCCCCChHHH-HHHHHHHHHHHHHHHHhCCCCCCCCccc
Q 048797 82 LLEAALA-SQLGVVGISFHIGSGATDFGAF-DGAISAAKAVFDAASARHGLTDQMRAKH 138 (240)
Q Consensus 82 ~l~~a~~-~~l~~~Glh~H~gS~~~~~~~~-~~~i~~~~~~~~~l~~~~g~~~~~~~ld 138 (240)
+++.+++ .++++.|+..|.++.. +++.. .+.++...++.+. .++.|+ +..++.
T Consensus 134 l~~~i~~~~~l~l~Gl~th~~~~d-~~~~~~~~q~~~~~~~~~~-l~~~~~--~~~~~s 188 (218)
T PF01168_consen 134 LAEAIKALPNLRLEGLMTHFAHAD-DPDYTNQEQFERFRELAEA-LEKAGI--PPPIVS 188 (218)
T ss_dssp HHHHHHHTTTEEEEEEEEBGSSTT-SSCHHHHHHHHHHHHHHHH-HHHTTT--TCSEEE
T ss_pred HHHHHhcCCCceEeeEeccccccC-CHHHHHHHHHHHHHHHHHH-HHhccC--CCceec
Confidence 9998886 4799999999998863 33322 3367777777777 444456 666665
No 45
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=97.83 E-value=0.00049 Score=57.80 Aligned_cols=108 Identities=16% Similarity=0.110 Sum_probs=80.1
Q ss_pred CCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHH
Q 048797 9 GKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIG 80 (240)
Q Consensus 9 ~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~ 80 (240)
..+|.+-||.-+.+....+...++... |.+.++ .+.+...+|.|.|+. ++ +-+|.|+.++++.
T Consensus 74 ~~~~~~ig~~q~~~~~~~~~~~~l~~~vds~~~~~~l~~~a~~~~~~~~V~l~vdt-g~--------gm~R~G~~~~e~~ 144 (229)
T TIGR00044 74 KLEWHFIGPLQSNKDRLVVENFDWVHTIDSLKIAKKLNEQREKLQPPLNVLLQINI-SD--------EESKSGIQPEELL 144 (229)
T ss_pred CceEEEECCCcchHHHHHhhhcCEEEEECCHHHHHHHHHHHHhcCCCceEEEEEEC-CC--------CCCCCCCCHHHHH
Confidence 457899999878888777777776433 766666 234566899999998 31 1239999999999
Q ss_pred HHHHHHHhC-CCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHH
Q 048797 81 ALLEAALAS-QLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASA 126 (240)
Q Consensus 81 ~~l~~a~~~-~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~ 126 (240)
++++.+.+. ++++.|+.+|.+.. -+++...+..+.+.++.+.+..
T Consensus 145 ~~~~~i~~~~~l~l~Gl~th~~~~-~~~~~~~~~~~~~~~~~~~l~~ 190 (229)
T TIGR00044 145 ELAIQIEELKHLKLRGLMTIGAPT-DSHEDQEENFRFMKLLFWQIKQ 190 (229)
T ss_pred HHHHHHhcCCCCeEEEEEEeCCCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence 988887764 79999999999874 4667666677777777777444
No 46
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=97.28 E-value=0.003 Score=56.47 Aligned_cols=87 Identities=17% Similarity=0.228 Sum_probs=63.2
Q ss_pred cCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCC
Q 048797 4 ALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGAN 75 (240)
Q Consensus 4 ~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~ 75 (240)
+.|+....+++..+. .++++.++++++... |.+.++ ++.++..+|.|.|+. . .. |+|+.
T Consensus 67 ~~G~~~~illlg~~~--~~~~~~~~~~~~~~~i~s~~~~~~l~~~a~~~~~~~~vhlkvDt-G--------m~--R~G~~ 133 (353)
T cd06815 67 DLGISGPKMLLRIPM--LSEVEDVVKYADISLNSELETIKALSEEAKKQGKIHKIILMVDL-G--------DL--REGVL 133 (353)
T ss_pred hcCCCCCEEEECCCC--HHHHHHHHhhcceeccChHHHHHHHHHHHHHcCCccceEEEEec-C--------CC--ccccC
Confidence 457765556665443 678998888776544 666665 234456789999987 3 12 99999
Q ss_pred HHHHHHHHHHHHhC-CCcEEEEEEeeCCC
Q 048797 76 LAEIGALLEAALAS-QLGVVGISFHIGSG 103 (240)
Q Consensus 76 ~~~~~~~l~~a~~~-~l~~~Glh~H~gS~ 103 (240)
++|+.++++.+++. ++++.|+..|.++.
T Consensus 134 ~~e~~~~~~~i~~~~~l~~~Gi~tH~~~~ 162 (353)
T cd06815 134 PEDLLDFVEEILKLPGIELVGIGTNLGCY 162 (353)
T ss_pred HHHHHHHHHHHhCCCCcEEEecccCcccc
Confidence 98888888887764 79999999998764
No 47
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=97.25 E-value=0.006 Score=51.19 Aligned_cols=76 Identities=12% Similarity=0.169 Sum_probs=55.4
Q ss_pred CCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHH-h-CCCcEEEEEEeeCCCCCC-hHHHHHHHHHHHHHH
Q 048797 45 HPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAAL-A-SQLGVVGISFHIGSGATD-FGAFDGAISAAKAVF 121 (240)
Q Consensus 45 ~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~-~-~~l~~~Glh~H~gS~~~~-~~~~~~~i~~~~~~~ 121 (240)
....+|+|-||. .. ..+|.|++++++.++++.+. + .+|++.||++|.+-.. + .+.-++..+.+.+++
T Consensus 115 ~~~~~VlIqVn~-g~--------e~~K~Gv~~~e~~~l~~~i~~~~~~L~l~GLMt~~~~~~-~~~~~~r~~f~~l~~l~ 184 (227)
T cd06822 115 REPLKVMVQVNT-SG--------EESKSGLEPSEAVELVKHIIEECPNLKFSGLMTIGSFGY-SLSSGPNPDFLCLVDCR 184 (227)
T ss_pred CCCCcEEEEEeC-CC--------CCCCCCCCHHHHHHHHHHHHhhCCCceEEEEEeeCCCCC-CcHHHHHHHHHHHHHHH
Confidence 566899999998 32 13499999999999998885 5 4899999999997632 3 233456666677777
Q ss_pred HHHHHhCCC
Q 048797 122 DAASARHGL 130 (240)
Q Consensus 122 ~~l~~~~g~ 130 (240)
+.+....|+
T Consensus 185 ~~L~~~~g~ 193 (227)
T cd06822 185 KKVCEKLGI 193 (227)
T ss_pred HHHHHhcCC
Confidence 775444455
No 48
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins. This subfamily is composed of Enterococcus gallinarum VanT and similar proteins. VanT is a membrane-bound serine racemase (EC 5.1.1.18) that is essential for vancomycin resistance in Enterococcus gallinarum. It converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. The C-terminal region of this protein contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, which is homologous to the fold type III PLP-dependent enzyme, bacterial alanine racemase (AR). AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. On the basis of this similarity, it has been suggested that dimer formation of VanT is required for its catalytic activity, and that it catalyzes the racemization of serine in a mechanistically similar manner to that of alanine by
Probab=97.24 E-value=0.0096 Score=53.53 Aligned_cols=112 Identities=17% Similarity=0.205 Sum_probs=70.7
Q ss_pred cCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc--cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHH
Q 048797 4 ALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK--GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEI 79 (240)
Q Consensus 4 ~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~--~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~ 79 (240)
+.|++..=+++..+. .+++..++++++... |.++++ .+..+..+|.|.|+. . -. |.|+.++++
T Consensus 69 ~~Gi~~~Ilvl~~~~--~~~~~~~~~~~l~~~i~~~~~l~~l~~~~~~~~vhlkvDt-G--------m~--R~G~~~~~~ 135 (368)
T cd06825 69 EAGIKGEILILGYTP--PVRAKELKKYSLTQTLISEAYAEELSKYAVNIKVHLKVDT-G--------MH--RLGESPEDI 135 (368)
T ss_pred hcCCCCCEEEEcCCC--HHHHHHHHHcCCEEEECCHHHHHHHHhcCCCceEEEEeeC-C--------CC--CCCCCHHHH
Confidence 457755444444433 578888889887655 888887 334456778888876 2 12 999998665
Q ss_pred HHHHHHHH-hCCCcEEEEEEeeCCCCC-Ch---HHHHHHHHHHHHHHHHHHHhCCC
Q 048797 80 GALLEAAL-ASQLGVVGISFHIGSGAT-DF---GAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 80 ~~~l~~a~-~~~l~~~Glh~H~gS~~~-~~---~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+.+.... ..++++.|+..|.++... +. +...+.++...++.+. .++.|+
T Consensus 136 -~~~~~~~~~~~l~~~Gi~tH~a~ad~~~~~~~~~~~~Q~~~f~~~~~~-l~~~g~ 189 (368)
T cd06825 136 -DSILAIYRLKNLKVSGIFSHLCVSDSLDEDDIAFTKHQIACFDQVLAD-LKARGI 189 (368)
T ss_pred -HHHHHHHhCCCCcEEEEECCCCCCCCCCCcCchHHHHHHHHHHHHHHH-HHhcCC
Confidence 4444443 357999999999987532 22 1223445555566665 333466
No 49
>PRK03646 dadX alanine racemase; Reviewed
Probab=97.05 E-value=0.012 Score=52.71 Aligned_cols=89 Identities=12% Similarity=0.159 Sum_probs=65.1
Q ss_pred cCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc--c--ccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHH
Q 048797 4 ALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK--G--KWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLA 77 (240)
Q Consensus 4 ~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~--~--~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~ 77 (240)
++|++.+=+++.++ -..++++.+.++++... |.++++ . ..++..+|.|.|+. . -+|.|+.++
T Consensus 68 ~~Gi~~~Ilvl~~~-~~~~~~~~~~~~~l~~~i~s~~~l~~l~~~~~~~~~~vhLkvDT-G----------M~R~G~~~~ 135 (355)
T PRK03646 68 ERGWKGPILMLEGF-FHAQDLELYDQHRLTTCVHSNWQLKALQNARLKAPLDIYLKVNS-G----------MNRLGFQPE 135 (355)
T ss_pred hcCCCCCEEEEeCC-CCHHHHHHHHHCCCEEEECCHHHHHHHHHhccCCCeEEEEEeeC-C----------CCCCCCCHH
Confidence 46886655555554 34678999999998765 877776 2 23445677777776 2 129999999
Q ss_pred HHHHHHHHHHhC-CCcEEEEEEeeCCCC
Q 048797 78 EIGALLEAALAS-QLGVVGISFHIGSGA 104 (240)
Q Consensus 78 ~~~~~l~~a~~~-~l~~~Glh~H~gS~~ 104 (240)
|+.++++..+++ ++++.|+..|.++..
T Consensus 136 e~~~~~~~i~~~~~l~~~Gi~sH~a~ad 163 (355)
T PRK03646 136 RVQTVWQQLRAMGNVGEMTLMSHFARAD 163 (355)
T ss_pred HHHHHHHHHHhCCCCEEEEEEcCCCCCC
Confidence 998888877665 799999999998753
No 50
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase. This subfamily is composed of chicken D-serine dehydratase (DSD, EC 4.3.1.18) and similar eukaryotic proteins. Chicken DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. It is a fold type III PLP-dependent enzyme with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Experimental data suggest that chicken DSD also exists as dimers. Sequence comparison and biochemical experiments show that chicken DSD is distinct from the ubiquitous bacterial DSDs coded by dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PL
Probab=96.99 E-value=0.018 Score=52.25 Aligned_cols=120 Identities=10% Similarity=0.175 Sum_probs=73.8
Q ss_pred cCCCCC--CcEEEcCCCCCHHHHHHHHHC----C-CCcc--CHHHHc--cc-----cCCCCcEEEEEeeCCCCCCcccCC
Q 048797 4 ALGVSG--KSVSLTVALRNENGLAEALGS----N-FDYA--SQAEIK--GK-----WHPRCDLLIRIKALDDCKAVCPQA 67 (240)
Q Consensus 4 ~~G~~~--~~Ii~~gp~K~~~~l~~A~~~----g-v~~~--s~~EL~--~~-----~~~~~~v~lRi~~~~~~~~~~~~~ 67 (240)
+.|+.. ++|+++.|. ..++++.+.+. + +... |.+.++ .+ .+...+|.|.|+. . .
T Consensus 73 ~~G~~~~I~dilla~~~-~~~~~~~l~~l~~~~~~i~~~Vds~~~l~~l~~~~a~~~g~~~~V~lkvDt-G--------m 142 (389)
T cd06817 73 PLGEEGRVDDILYGLPV-PPSKLPRLAELSKKLGHLRVMVDNPEQLDFLEQFQPLKSGKKWSVFIKVDC-G--------T 142 (389)
T ss_pred HhccccccccEEEECCC-CHHHHHHHHHHHhhcCceEEEECCHHHHHHHHHHHhhccCCceEEEEEEcC-C--------C
Confidence 346532 357787787 66888877765 3 5544 888887 22 2345667777776 2 1
Q ss_pred CCCCCCCCH--HHHHHHHHHHHh--CCCcEEEEEEeeCCC--CCChHHHHHHH----HHHHHHHHHHHHh-CCCCCCCCc
Q 048797 68 QDSKCGANL--AEIGALLEAALA--SQLGVVGISFHIGSG--ATDFGAFDGAI----SAAKAVFDAASAR-HGLTDQMRA 136 (240)
Q Consensus 68 ~~skFG~~~--~~~~~~l~~a~~--~~l~~~Glh~H~gS~--~~~~~~~~~~i----~~~~~~~~~l~~~-~g~~~~~~~ 136 (240)
. |.|+.+ +++.++++.+.+ .++++.|++.|.|.. ..+++..++.+ +.+.++.+. .++ .|+ +...
T Consensus 143 ~--R~Gv~~~~~~~~~l~~~i~~~~~~L~l~Gi~tH~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~-l~~~~g~--~~~~ 217 (389)
T cd06817 143 H--RAGVPPESEDAKELIQKLEKASEAVELFGFYSHAGHSYSSRSAEDAKEVLREEIEAVLTAAKK-LKSIQGD--RKLT 217 (389)
T ss_pred C--cCCCCCChHHHHHHHHHHHhhCCCcEEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHH-HHHhcCC--CCCE
Confidence 2 899975 357778877665 579999999999873 33444444333 333344444 233 566 5555
Q ss_pred cc
Q 048797 137 KH 138 (240)
Q Consensus 137 ld 138 (240)
+-
T Consensus 218 vs 219 (389)
T cd06817 218 LS 219 (389)
T ss_pred EE
Confidence 54
No 51
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=96.91 E-value=0.012 Score=53.10 Aligned_cols=85 Identities=9% Similarity=0.063 Sum_probs=56.7
Q ss_pred CCCCCcEEEcCCCCCHHHHHHH----------HHCCCCcc--CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCC
Q 048797 6 GVSGKSVSLTVALRNENGLAEA----------LGSNFDYA--SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQA 67 (240)
Q Consensus 6 G~~~~~Ii~~gp~K~~~~l~~A----------~~~gv~~~--s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~ 67 (240)
++....|+++.|. ..+.+... .+.++.+. |.++++ .+.+...+|.|.|+. + -
T Consensus 75 ~~~~~dILl~~p~-~~~~~~r~~~~l~~~~~~~~~~l~~~Vds~e~l~~l~~~a~~~g~~l~V~lkVDt-G--------m 144 (379)
T cd06814 75 AFPDADILLGKPM-PVAAAARFYRQLTGSAFRPARQLQWLIDTPERLAQYRALARSLGLTLRINLELDV-G--------L 144 (379)
T ss_pred cCCCcCeEEeCCC-CcHHHHHHHhhccccccchhcCEEEEECCHHHHHHHHHHHHHcCCceEEEEEeCC-C--------C
Confidence 3444589999886 33333222 23445444 888887 233455777777776 2 1
Q ss_pred CCCCCCCCHH-HHHHHHHHHHh-CCCcEEEEEEeeCC
Q 048797 68 QDSKCGANLA-EIGALLEAALA-SQLGVVGISFHIGS 102 (240)
Q Consensus 68 ~~skFG~~~~-~~~~~l~~a~~-~~l~~~Glh~H~gS 102 (240)
. |.|+..+ ++.++++.+.+ .++++.|++.|-|.
T Consensus 145 ~--R~Gv~~~~~~~~l~~~i~~~~~l~~~Gi~ty~gh 179 (379)
T cd06814 145 H--RGGFADPQTLPKALTAIDAPPRLRFSGLMGYEPH 179 (379)
T ss_pred C--CCCCCCHHHHHHHHHHHHhCCCceEEEEEEEccc
Confidence 2 8999865 68888887665 47999999999987
No 52
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=96.69 E-value=0.054 Score=45.11 Aligned_cols=105 Identities=18% Similarity=0.231 Sum_probs=74.7
Q ss_pred cEEEcCCCCCHHHHHHHHHCCCCcc-CHHHHc------c---ccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHH
Q 048797 11 SVSLTVALRNENGLAEALGSNFDYA-SQAEIK------G---KWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIG 80 (240)
Q Consensus 11 ~Ii~~gp~K~~~~l~~A~~~gv~~~-s~~EL~------~---~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~ 80 (240)
...|-||.-+.+- +.+++ .+..+ |++.+. + ..+...+|+|.||. . +..||-|++++++.
T Consensus 75 ~WHfIG~LQsNK~-k~v~~-~~~~ihSlDr~klA~~l~kra~~~~~~l~v~iQVNi-~--------~E~sK~G~~~~e~~ 143 (228)
T COG0325 75 EWHFIGPLQSNKV-KLVAE-NFDWIHSLDRLKLAKELNKRALELPKPLNVLIQVNI-S--------GEESKSGVPPEELD 143 (228)
T ss_pred EEEEechhhhhHH-HHHHh-hcceeeecCHHHHHHHHHHHHHhCCCCceEEEEEec-C--------CccccCCCCHHHHH
Confidence 4678888655543 33333 33444 666555 1 22336899999998 3 23569999999999
Q ss_pred HHHHHHHhC-CCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHh
Q 048797 81 ALLEAALAS-QLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASAR 127 (240)
Q Consensus 81 ~~l~~a~~~-~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~ 127 (240)
++++.+++. +|++.||-+-. +-..|++......+.++++++.+...
T Consensus 144 ~~~~~~~~~~~L~l~GLM~ip-p~~~d~~~~~~~F~~l~~l~~~l~~~ 190 (228)
T COG0325 144 ELAQEVQELPNLELRGLMTIP-PLTDDPEEIFAVFRKLRKLFDELKAK 190 (228)
T ss_pred HHHHHHHhCCCCeEeEEEeeC-CCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999988765 89999998876 44568888888888888888885444
No 53
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=96.58 E-value=0.19 Score=44.98 Aligned_cols=90 Identities=17% Similarity=0.189 Sum_probs=62.6
Q ss_pred cCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc---cc-cC-CCCcEEEEEeeCCCCCCcccCCCCCCCCCCH
Q 048797 4 ALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK---GK-WH-PRCDLLIRIKALDDCKAVCPQAQDSKCGANL 76 (240)
Q Consensus 4 ~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~---~~-~~-~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~ 76 (240)
++|+....|..=+..-+.++++.+.++++... |.++|+ +. .. +..+|-|.|+. . =+|.|+.+
T Consensus 71 ~~gi~~~~IlvL~g~~~~~~~~~~~~~~l~~~v~s~~ql~~l~~~~~~~~~l~vhLkiDT-G----------M~RlG~~~ 139 (360)
T COG0787 71 EAGITGAPILVLEGFFPAEELELAAAYNLTPVVNSLEQLEALKNAALKNKPLKVHLKIDT-G----------MNRLGLRP 139 (360)
T ss_pred HcCCCCCCEEEEcCcCChhhHHHHHHcCCeEEECCHHHHHHHHHhhhhcCceEEEEEECC-C----------CCcCCCCh
Confidence 46777556776655555666688999998866 999998 21 11 44667776665 2 12999999
Q ss_pred HHHHHHHH-HHHhCCCcEEEEEEeeCCCC
Q 048797 77 AEIGALLE-AALASQLGVVGISFHIGSGA 104 (240)
Q Consensus 77 ~~~~~~l~-~a~~~~l~~~Glh~H~gS~~ 104 (240)
++....+. .++..++.+.|+--|..+.-
T Consensus 140 ~e~~~~~~~~~~~~~~~~~gi~SHfa~AD 168 (360)
T COG0787 140 EEAVALAIDLIALKNLDLEGIFSHFACAD 168 (360)
T ss_pred HHHHHHHHHHhhccCCceEEEEcccCCCC
Confidence 88665554 45556777999999998754
No 54
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=96.55 E-value=0.043 Score=54.50 Aligned_cols=107 Identities=13% Similarity=0.111 Sum_probs=74.1
Q ss_pred cCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc--c----ccC-CCCcEEEEEeeCCCCCCcccCCCCCCCCC
Q 048797 4 ALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK--G----KWH-PRCDLLIRIKALDDCKAVCPQAQDSKCGA 74 (240)
Q Consensus 4 ~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~--~----~~~-~~~~v~lRi~~~~~~~~~~~~~~~skFG~ 74 (240)
++|++.. |..-+|. ++++..++++++... |.++++ . +.+ ...+|.|.|+. . -.|.|+
T Consensus 527 ~~g~~~~-Ilvl~~~--~~~~~~~~~~~l~~~i~s~~~l~~l~~~~~~~~~~~~~v~l~vDt-G----------m~R~G~ 592 (822)
T PRK11930 527 KAGITLP-IMVMNPE--PTSFDTIIDYKLEPEIYSFRLLDAFIKAAQKKGITGYPIHIKIDT-G----------MHRLGF 592 (822)
T ss_pred hcCCCCC-EEEEeCC--HHHHHHHHHcCCEEEECCHHHHHHHHHHHHHcCCCceEEEEEeeC-C----------CCCCCC
Confidence 4577644 7766774 678999999998765 888887 1 233 45677887776 2 129999
Q ss_pred CHHHHHHHHHHHHhC-CCcEEEEEEeeCCCC-CChHHH-HHHHHHHHHHHHHH
Q 048797 75 NLAEIGALLEAALAS-QLGVVGISFHIGSGA-TDFGAF-DGAISAAKAVFDAA 124 (240)
Q Consensus 75 ~~~~~~~~l~~a~~~-~l~~~Glh~H~gS~~-~~~~~~-~~~i~~~~~~~~~l 124 (240)
.++++.++++..++. ++++.|+..|.++.. .+.+.+ .+.++...++.+.+
T Consensus 593 ~~~~~~~~~~~i~~~~~l~~~Gi~tH~~~ad~~~~~~~~~~q~~~f~~~~~~l 645 (822)
T PRK11930 593 EPEDIPELARRLKKQPALKVRSVFSHLAGSDDPDHDDFTRQQIELFDEGSEEL 645 (822)
T ss_pred ChHHHHHHHHHHHhCCCCcEEEEECCCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 999888888877664 699999999998743 232223 45556666666653
No 55
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only]
Probab=94.47 E-value=0.27 Score=40.35 Aligned_cols=87 Identities=21% Similarity=0.216 Sum_probs=58.9
Q ss_pred CCCCcEEEcCCCCCHHHHHHHHHCCCCcc---CHHHHc-c----------------------------------------
Q 048797 7 VSGKSVSLTVALRNENGLAEALGSNFDYA---SQAEIK-G---------------------------------------- 42 (240)
Q Consensus 7 ~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~---s~~EL~-~---------------------------------------- 42 (240)
.+.-|++--+-.|+.+.++.|.++|.+.| =..||. +
T Consensus 29 ~~~~rlvaVSKtKPa~~i~~~Y~~GqR~FGENYVQEl~eKap~lp~DI~WHFIG~lQsnK~kkl~svpnL~~vetVDseK 108 (244)
T KOG3157|consen 29 ENAVRLVAVSKTKPASLIIEAYDAGQRHFGENYVQELIEKAPLLPDDIKWHFIGHLQSNKCKKLLSVPNLYSVETVDSEK 108 (244)
T ss_pred ccceEEEEeecCCcHHHHHHHHHcCcChhhHHHHHHHHHhcccCcccceeeeechhhhcccchhccCCceEEEEecchHH
Confidence 34445666667788899999999888877 334443 0
Q ss_pred ----------ccCC--CCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHh--CCCcEEEEEEeeCCC
Q 048797 43 ----------KWHP--RCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALA--SQLGVVGISFHIGSG 103 (240)
Q Consensus 43 ----------~~~~--~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~--~~l~~~Glh~H~gS~ 103 (240)
+..+ +.+|++.||. . +.++|+|+.+.++.++.+..++ .+|++.||-. +||-
T Consensus 109 ~A~~ld~a~~k~g~~~PL~V~VQvNT-S--------GEd~K~Giepse~~~l~~~i~~~c~nL~f~GlMT-IGs~ 173 (244)
T KOG3157|consen 109 KARKLDSAWSKLGPDNPLKVLVQVNT-S--------GEDSKSGIEPSEAPELAEHIKSECKNLKFSGLMT-IGSF 173 (244)
T ss_pred HHHHHHHHHHhcCCCCCeEEEEEeec-C--------CccccCCCChhhhHHHHHHHHHhCCcceeeeeEE-eccc
Confidence 0111 3455666665 2 2367999999999999998776 4899999853 5553
No 56
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=91.90 E-value=0.51 Score=41.25 Aligned_cols=82 Identities=12% Similarity=0.161 Sum_probs=56.0
Q ss_pred ccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhC-CCcEEEEEEeeCCC---CCChHHHHHHHHHHH
Q 048797 43 KWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALAS-QLGVVGISFHIGSG---ATDFGAFDGAISAAK 118 (240)
Q Consensus 43 ~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~-~l~~~Glh~H~gS~---~~~~~~~~~~i~~~~ 118 (240)
+.++..+|+|+|.. ++- . .+ .+|.-.+++.+.++....+ |++++||-+|.++. .-.++++...++
T Consensus 114 ~~Gk~h~VlLmVd~-~Dl----r-eG--~~~~~~~~l~~~V~eI~~lkGi~~vGlgTnF~Cfg~v~PTp~n~~~ll~--- 182 (353)
T COG3457 114 RMGKVHDVLLMVDY-GDL----R-EG--QWGFLIEDLEETVEEIQQLKGIHLVGLGTNFPCFGDVLPTPENLESLLQ--- 182 (353)
T ss_pred HhCcceeEEEEEEc-ccc----c-Cc--chhhHHHHHHHHHHHHhcCCCceEEeeecccccccCcCCCcccHHHHHH---
Confidence 55778899999998 431 0 11 4555568888888876665 89999997777654 334555555444
Q ss_pred HHHHHHHHhCCCCCCCCccc
Q 048797 119 AVFDAASARHGLTDQMRAKH 138 (240)
Q Consensus 119 ~~~~~l~~~~g~~~~~~~ld 138 (240)
..+.+.+..|+ ++++++
T Consensus 183 -~~~~lE~~~Gi--~l~~vs 199 (353)
T COG3457 183 -GKKKLEASSGI--QLKQVS 199 (353)
T ss_pred -HHHHHHHhcCc--eeEEec
Confidence 33444566799 999998
No 57
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=87.42 E-value=13 Score=33.20 Aligned_cols=96 Identities=17% Similarity=0.240 Sum_probs=59.2
Q ss_pred CHHHHHHHHHCCCCcc--CHHHHc---cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCCCcEE
Q 048797 20 NENGLAEALGSNFDYA--SQAEIK---GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVV 94 (240)
Q Consensus 20 ~~~~l~~A~~~gv~~~--s~~EL~---~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~l~~~ 94 (240)
...-++.+.+.|+..+ +..-++ ..+..+..++||+|. ...-. .. ++. ......-++.|-++|-+=+
T Consensus 93 p~~~i~~a~~~g~dAv~~~~G~l~~~~~~~~~~iplIlkln~-~t~l~----~~-~~~---~~~l~~sVedAlrLGAdAV 163 (348)
T PRK09250 93 PENIVKLAIEAGCNAVASTLGVLEAVARKYAHKIPFILKLNH-NELLS----YP-NTY---DQALTASVEDALRLGAVAV 163 (348)
T ss_pred HHHHHHHHHhcCCCEEEeCHHHHHhccccccCCCCEEEEeCC-CCCCC----CC-CCC---cccceecHHHHHHCCCCEE
Confidence 3446777788888766 766665 334456789999996 32110 00 010 1111112334556787889
Q ss_pred EEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 95 GISFHIGSGATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 95 Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
|+|+.+||.. + .+.++.+.++.++ +.++|+
T Consensus 164 ~~tvy~Gs~~---E--~~ml~~l~~i~~e-a~~~Gl 193 (348)
T PRK09250 164 GATIYFGSEE---S--RRQIEEISEAFEE-AHELGL 193 (348)
T ss_pred EEEEecCCHH---H--HHHHHHHHHHHHH-HHHhCC
Confidence 9999999742 2 4567777778888 888998
No 58
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=86.45 E-value=14 Score=31.76 Aligned_cols=93 Identities=16% Similarity=0.233 Sum_probs=57.3
Q ss_pred HHHHHHHHCCCCcc--CHHHHc---cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEE
Q 048797 22 NGLAEALGSNFDYA--SQAEIK---GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGI 96 (240)
Q Consensus 22 ~~l~~A~~~gv~~~--s~~EL~---~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~l~~~Gl 96 (240)
.-++.+.+.|+..+ +..-+. ..+..+..+++++|. ... ++.+. . ......-.+.+-.+|.+=+|.
T Consensus 47 ~~v~~v~~~g~dav~~~~G~~~~~~~~y~~dvplivkl~~-~t~-----l~~~~---~-~~~~~~~ve~ai~lgadAV~~ 116 (265)
T COG1830 47 NIVAKVAEAGADAVAMTPGIARSVHRGYAHDVPLIVKLNG-STS-----LSPDP---N-DQVLVATVEDAIRLGADAVGA 116 (265)
T ss_pred HHHHHHHhcCCCEEEecHhHHhhcCccccCCcCEEEEecc-ccc-----cCCCc---c-cceeeeeHHHHHhCCCcEEEE
Confidence 34455567788776 655565 445557899999997 321 11111 0 111111233344568888999
Q ss_pred EEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 97 SFHIGSGATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 97 h~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
|..+||.. + .+.++.+.++++. +.++|+
T Consensus 117 ~Vy~Gse~-e----~~~i~~~~~v~~~-a~~~Gm 144 (265)
T COG1830 117 TVYVGSET-E----REMIENISQVVED-AHELGM 144 (265)
T ss_pred EEecCCcc-h----HHHHHHHHHHHHH-HHHcCC
Confidence 99999964 2 4556666777777 888998
No 59
>PRK06852 aldolase; Validated
Probab=82.18 E-value=22 Score=31.22 Aligned_cols=100 Identities=17% Similarity=0.219 Sum_probs=57.5
Q ss_pred CHHHHHHHHHCCCCcc--CHHHHc--cccCCCCcEEEEEeeCCCCCCcccCCCCCCCC--CCHHHHHHHHHHHHh--CCC
Q 048797 20 NENGLAEALGSNFDYA--SQAEIK--GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCG--ANLAEIGALLEAALA--SQL 91 (240)
Q Consensus 20 ~~~~l~~A~~~gv~~~--s~~EL~--~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG--~~~~~~~~~l~~a~~--~~l 91 (240)
.+..++.+.+.|+..+ +..-++ ....++..++||+|. ...-. +.. ++.- .-...+.++++.-.. +|.
T Consensus 61 p~~~i~~~~~~g~dav~~~~G~l~~~~~~~~~~~lIlkl~~-~t~l~--~~~--~~~p~~~l~~sVeeAvrlG~~~~~~A 135 (304)
T PRK06852 61 PEHLFRIASKAKIGVFATQLGLIARYGMDYPDVPYLVKLNS-KTNLV--KTS--QRDPLSRQLLDVEQVVEFKENSGLNI 135 (304)
T ss_pred HHHHHHHHHhcCCCEEEeCHHHHHhhccccCCCcEEEEECC-CCCcC--Ccc--cCCccccceecHHHHHhcCCccCCCc
Confidence 4456677778888766 666665 333456789999986 32111 000 0111 111123444443212 235
Q ss_pred cEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 92 GVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 92 ~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+=+|+|+.+||. .+ .+.++.+.++.++ +.++|+
T Consensus 136 dAV~v~v~~Gs~---~E--~~ml~~l~~v~~e-a~~~Gl 168 (304)
T PRK06852 136 LGVGYTIYLGSE---YE--SEMLSEAAQIIYE-AHKHGL 168 (304)
T ss_pred eEEEEEEecCCH---HH--HHHHHHHHHHHHH-HHHhCC
Confidence 667888888873 22 4667777788888 888998
No 60
>TIGR01229 rocF_arginase arginase. This model helps resolve arginases from known and putative agmatinases, formiminoglutamases, and other related proteins of unknown specifity. The pathway from arginine to the polyamine putrescine may procede by hydrolysis to remove urea (arginase) followed by decarboxylation (ornithine decarboxylase), or by decarboxylation first (arginine decarboxylase) followed by removal of urea (agmatinase).
Probab=80.29 E-value=19 Score=31.30 Aligned_cols=98 Identities=11% Similarity=0.049 Sum_probs=62.1
Q ss_pred CCCCcEEEcCCCC-CHHHHHHHHHCCCCccCHHHHc------------cccCCCC-cEEEEEeeCCCCC-Cccc-CCCCC
Q 048797 7 VSGKSVSLTVALR-NENGLAEALGSNFDYASQAEIK------------GKWHPRC-DLLIRIKALDDCK-AVCP-QAQDS 70 (240)
Q Consensus 7 ~~~~~Ii~~gp~K-~~~~l~~A~~~gv~~~s~~EL~------------~~~~~~~-~v~lRi~~~~~~~-~~~~-~~~~s 70 (240)
++|+++++-|--. ++++.+++.+.|+.+++.+|+. ......- .|.|=+.. +.-. +..+ .+...
T Consensus 163 ~~~~~~v~iGiR~~~~~e~~~~~~~gi~~~~~~~i~~~g~~~v~~~~~~~l~~~~~~vyvS~Di-DvlDps~aPgv~tp~ 241 (300)
T TIGR01229 163 ISPKNLVYIGLRSVDPGERKILKELGIKVFSMHEIDELGIGKVVEETLEYLKAEDGPIHLSLDV-DGLDPSLAPATGTPV 241 (300)
T ss_pred cCcccEEEEecCCCChHHHHHHHHcCCeEEEHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEEec-cccCcccCCCCCCCC
Confidence 5678999888744 7888899999999877555543 1111112 46776665 4221 1111 23455
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCC
Q 048797 71 KCGANLAEIGALLEAALASQLGVVGISFHIGSGATD 106 (240)
Q Consensus 71 kFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~ 106 (240)
..|++..|+..+++.+.+.+ +++|+.+--=+-..|
T Consensus 242 pgGl~~~e~~~~l~~i~~~~-~v~g~DivE~~P~~D 276 (300)
T TIGR01229 242 VGGLTFREGLLIMEMLYETG-LLTALDVVEVNPTLD 276 (300)
T ss_pred CCCCCHHHHHHHHHHHHhcC-CEEEEEEEEECcccc
Confidence 89999999999999875543 567776654333344
No 61
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism]
Probab=75.42 E-value=35 Score=30.82 Aligned_cols=84 Identities=20% Similarity=0.217 Sum_probs=53.6
Q ss_pred CcEEEcCCCCCHHHHH-HH-HHCCCC---cc--CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCH
Q 048797 10 KSVSLTVALRNENGLA-EA-LGSNFD---YA--SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANL 76 (240)
Q Consensus 10 ~~Ii~~gp~K~~~~l~-~A-~~~gv~---~~--s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~ 76 (240)
++|+|+.|.-..+.++ .+ +..... +. |.+.++ ...+...+|+|-+.. . .. |.|+.-
T Consensus 87 ~dIl~a~p~~~~~~~~~L~~l~~~~~~~~~~iDs~~~~~~l~~~~~~~~~pl~v~iE~D~-G--------~~--R~Gv~t 155 (368)
T COG3616 87 DDILLAYPLPGRAALAALAELLADPPRISVLIDSVEQLDALAALARDAGKPLRVLIEIDS-G--------LH--RSGVRT 155 (368)
T ss_pred cceEEecCCCchhHHHHHHHhcCCCCceEEEeCCHHHHHHHHHHHHhcCCCeeEEEEeCC-C--------CC--ccCcCC
Confidence 6899999888777777 33 233333 22 888887 234455566665554 1 23 889877
Q ss_pred HHHHHHH-HHH-HhCCCcEEEEEEeeCCCC
Q 048797 77 AEIGALL-EAA-LASQLGVVGISFHIGSGA 104 (240)
Q Consensus 77 ~~~~~~l-~~a-~~~~l~~~Glh~H~gS~~ 104 (240)
.+....+ +.. +..++.+.|+.+|.|.-.
T Consensus 156 ~~~~~~La~~~~~~~~l~~~Gv~~y~gh~~ 185 (368)
T COG3616 156 PEVAEALAAEIAAAPGLRLAGVMTYPGHSY 185 (368)
T ss_pred hHHHHHHHHhhhhccceEEeeeeccccccc
Confidence 5544444 433 345899999999996643
No 62
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=73.50 E-value=3.5 Score=37.31 Aligned_cols=59 Identities=12% Similarity=0.033 Sum_probs=38.6
Q ss_pred cccCCCCcEEEEEeeCCCCCCcccC----C-CCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCC
Q 048797 42 GKWHPRCDLLIRIKALDDCKAVCPQ----A-QDSKCGANLAEIGALLEAALASQLGVVGISFHIGSG 103 (240)
Q Consensus 42 ~~~~~~~~v~lRi~~~~~~~~~~~~----~-~~skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~ 103 (240)
+...++..|++|+++ .+....+.. + ....-|.++++..++++.+.+.|+++ ||+|.|+.
T Consensus 213 ~~~g~~f~v~vri~~-~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~--l~vs~g~~ 276 (382)
T cd02931 213 ARCGEDFPVSLRYSV-KSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDA--LDVDAGSY 276 (382)
T ss_pred HhcCCCceEEEEEec-hhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCE--EEeCCCCC
Confidence 456667889999997 421100000 0 01156999999999999888888765 67777663
No 63
>PRK01722 formimidoylglutamase; Provisional
Probab=71.60 E-value=37 Score=29.78 Aligned_cols=99 Identities=14% Similarity=0.099 Sum_probs=61.4
Q ss_pred CCCCcEEEcCCCC---CHHHHHHHHHCCCCccCHHHHc--------cc----cCCCCcEEEEEeeCCCCC-Cccc-CCCC
Q 048797 7 VSGKSVSLTVALR---NENGLAEALGSNFDYASQAEIK--------GK----WHPRCDLLIRIKALDDCK-AVCP-QAQD 69 (240)
Q Consensus 7 ~~~~~Ii~~gp~K---~~~~l~~A~~~gv~~~s~~EL~--------~~----~~~~~~v~lRi~~~~~~~-~~~~-~~~~ 69 (240)
+.+++++.-|--. +.++.+++.+.|+.+++.+|+. ++ .....+|.|=+.. +.-. +..+ .+..
T Consensus 182 ~~~~~~~~iGiR~~~~~~~~~~~~~~~g~~~~~~~~i~~~g~~~~~~~~~~~i~~~~~vyvS~Di-DvlDps~aPgtgtp 260 (320)
T PRK01722 182 IRGFHYACIGVSRASNTQALWEEAKELGVTVVTDLDVRERGLKDILTELQEFIDQVDYIYLTIDL-DVLPAAEAPGVSAP 260 (320)
T ss_pred CCCCCEEEEEecCCCCCHHHHHHHHHCCCEEEEHHHhhhcCHHHHHHHHHHHHhcCCeEEEEEEe-cCcChhhCCCCCCC
Confidence 4567788776643 5688899999998777444442 11 1113357776666 4321 1111 2335
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCCh
Q 048797 70 SKCGANLAEIGALLEAALASQLGVVGISFHIGSGATDF 107 (240)
Q Consensus 70 skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~ 107 (240)
...|++..|+.++++.+.+.. +++|+.+---+-..|.
T Consensus 261 ~pgGls~~e~~~il~~l~~~~-~vvg~DivE~~P~~D~ 297 (320)
T PRK01722 261 AAGGVPLETLLRAIEPICRSG-KLQAADLVEYNPTFDF 297 (320)
T ss_pred cCCCCCHHHHHHHHHHHHhcC-CEEEEEEEEECCCCCC
Confidence 588999999999999875443 6788887644444443
No 64
>PRK08227 autoinducer 2 aldolase; Validated
Probab=70.12 E-value=69 Score=27.53 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=52.4
Q ss_pred HHHHHHHHCCCCcc--CHHHHc--cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEE
Q 048797 22 NGLAEALGSNFDYA--SQAEIK--GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGIS 97 (240)
Q Consensus 22 ~~l~~A~~~gv~~~--s~~EL~--~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~l~~~Glh 97 (240)
+.+....+ |+..+ +..-++ .....+..++||+|. ..... +... ...+..-++.|-++|-+=+++|
T Consensus 46 ~~~~~i~~-~~da~~~~~G~~~~~~~~~~~~~lil~ls~-~t~~~--~~~~-------~~~l~~sVeeAvrlGAdAV~~~ 114 (264)
T PRK08227 46 INIAPLFP-YADVLMCTRGILRSVVPPATNKPVVLRASG-GNSIL--KELS-------NEAVAVDMEDAVRLNACAVAAQ 114 (264)
T ss_pred HHHHHHhh-cCCEEEeChhHHHhcccccCCCcEEEEEcC-CCCCC--CCCC-------cccceecHHHHHHCCCCEEEEE
Confidence 34444444 66655 665565 233455679999986 32111 0000 0111111233445677888999
Q ss_pred EeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 98 FHIGSGATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 98 ~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+.+||.. + .+.++.+.++.++ +.++|+
T Consensus 115 v~~Gs~~---E--~~~l~~l~~v~~e-a~~~G~ 141 (264)
T PRK08227 115 VFIGSEY---E--HQSIKNIIQLVDA-GLRYGM 141 (264)
T ss_pred EecCCHH---H--HHHHHHHHHHHHH-HHHhCC
Confidence 9999742 2 4566777777777 888998
No 65
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=68.40 E-value=28 Score=27.50 Aligned_cols=53 Identities=15% Similarity=0.026 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeCCCCC-------ChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 76 LAEIGALLEAALASQLGVVGISFHIGSGAT-------DFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 76 ~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~-------~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
.+++.++.+.+++.|+++.++|++...... +.+ ..++++.+.+.++. ++.+|.
T Consensus 26 ~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~-a~~lg~ 85 (213)
T PF01261_consen 26 DDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDL-AKRLGA 85 (213)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHH-HHHHTB
T ss_pred hHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHH-HHHhCC
Confidence 346777888889999999999998876552 234 66777777777777 666664
No 66
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=67.50 E-value=14 Score=33.26 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChH---HHHHHHHHHHHHHHHHHHhCCCCCCCCccc
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFG---AFDGAISAAKAVFDAASARHGLTDQMRAKH 138 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~---~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld 138 (240)
|+|..=+..+| ++.|-+++|+|+..+...-+.. .+.+.++.++.+.+. +|+ ++..+|
T Consensus 10 GVDSsvaA~LL---k~~G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~----LgI--p~~v~d 69 (356)
T PF03054_consen 10 GVDSSVAAALL---KEQGYDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEK----LGI--PHYVVD 69 (356)
T ss_dssp SHHHHHHHHHH---HHCT-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHH----HT----EEEEE
T ss_pred CHHHHHHHHHH---HhhcccceEEEEEEeccccccCCCCCchhhHHHHHHHHHh----cCC--CEEEEC
Confidence 66555444443 5679999999999988643332 244556666666554 799 889999
No 67
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=63.81 E-value=4.5 Score=35.45 Aligned_cols=50 Identities=22% Similarity=0.204 Sum_probs=37.3
Q ss_pred cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCC
Q 048797 42 GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGISFHIGSG 103 (240)
Q Consensus 42 ~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~ 103 (240)
+..+++..|++|+++ .+. . ..|.+.+++.++++.+.+.+++ .||+|.|+.
T Consensus 203 ~~~g~d~~i~vris~-~~~-------~--~~g~~~~e~~~la~~l~~~G~d--~i~vs~g~~ 252 (327)
T cd02803 203 EAVGPDFPVGVRLSA-DDF-------V--PGGLTLEEAIEIAKALEEAGVD--ALHVSGGSY 252 (327)
T ss_pred HHcCCCceEEEEech-hcc-------C--CCCCCHHHHHHHHHHHHHcCCC--EEEeCCCCC
Confidence 445677899999998 421 1 3578899999999998888875 577777664
No 68
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=61.95 E-value=32 Score=29.07 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH 138 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld 138 (240)
++++||+.+++..+.+.|-+++-|| |+ |+..|-...+++.++ ++.|+ +.+++-
T Consensus 58 ~~tLeeIi~~m~~a~~~Gk~VvRLh----SG--DpsiYgA~~EQm~~L-----~~~gI--~yevvP 110 (254)
T COG2875 58 SLTLEEIIDLMVDAVREGKDVVRLH----SG--DPSIYGALAEQMREL-----EALGI--PYEVVP 110 (254)
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEee----cC--ChhHHHHHHHHHHHH-----HHcCC--CeEEeC
Confidence 7889999999999999999999998 64 888888777776653 34688 777776
No 69
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=60.25 E-value=19 Score=28.59 Aligned_cols=52 Identities=10% Similarity=0.135 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeC-----CCCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 76 LAEIGALLEAALASQLGVVGISFHIG-----SGATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 76 ~~~~~~~l~~a~~~~l~~~Glh~H~g-----S~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
.+.+.+.++.|+.+|.+.+.+ |.| ......+.+...++...++.+. +++.|+
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~--~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~-a~~~gv 126 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVV--HSGRYPSGPEDDTEENWERLAENLRELAEI-AEEYGV 126 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEE--ECTTESSSTTSSHHHHHHHHHHHHHHHHHH-HHHHTS
T ss_pred HHHHHHHHHHHHHhCCCceee--cCcccccccCCCHHHHHHHHHHHHHHHHhh-hhhhcc
Confidence 567788888999999876554 455 2223345677777777777777 666676
No 70
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=58.84 E-value=76 Score=29.20 Aligned_cols=98 Identities=13% Similarity=0.058 Sum_probs=59.2
Q ss_pred CCCCCcEEEcCCCCCHHHHHHHH--HCCCCccCHHHHc-cccCCCCcE------EEEEeeCCCCCCcccCCCCCCCCCCH
Q 048797 6 GVSGKSVSLTVALRNENGLAEAL--GSNFDYASQAEIK-GKWHPRCDL------LIRIKALDDCKAVCPQAQDSKCGANL 76 (240)
Q Consensus 6 G~~~~~Ii~~gp~K~~~~l~~A~--~~gv~~~s~~EL~-~~~~~~~~v------~lRi~~~~~~~~~~~~~~~skFG~~~ 76 (240)
-|+|+|++.++-+-+..+.-.-+ +.|.... - .-++|+..- +++|-| +...+.--|-++.
T Consensus 143 ~fdP~~~Vv~~G~T~ane~l~fcLadpgdafL-----vPtPyY~gfdrdl~~rTgveivp-------v~c~Ss~~f~itv 210 (471)
T KOG0256|consen 143 KFDPERVVVTNGATSANETLMFCLADPGDAFL-----VPTPYYPGFDRDLRWRTGVEIVP-------VHCSSSNGFQITV 210 (471)
T ss_pred ccCccceEEecccchhhHHHHHHhcCCCceee-----ecCCCCCcccccceeccCceEEE-------EEeecCCCccccH
Confidence 48899999888887777665443 2343211 1 233333322 333333 1112212589999
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeCCC----CCChHHHHHHHH
Q 048797 77 AEIGALLEAALASQLGVVGISFHIGSG----ATDFGAFDGAIS 115 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~gS~----~~~~~~~~~~i~ 115 (240)
+.+++++++|++.|+++.|+=+--=|+ .++++.....+.
T Consensus 211 ~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~ 253 (471)
T KOG0256|consen 211 EALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLN 253 (471)
T ss_pred HHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHH
Confidence 999999999999999999998754343 345555444433
No 71
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=58.79 E-value=7.2 Score=34.51 Aligned_cols=49 Identities=24% Similarity=0.338 Sum_probs=35.5
Q ss_pred cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCC
Q 048797 42 GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGISFHIGS 102 (240)
Q Consensus 42 ~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS 102 (240)
+..+++..|++|+++ .+. . +-|.+.+++.++++.+.+.++++ ||+|.|+
T Consensus 216 ~~vG~d~~v~vri~~-~~~-------~--~~g~~~~e~~~ia~~Le~~gvd~--iev~~g~ 264 (336)
T cd02932 216 AVWPEDKPLFVRISA-TDW-------V--EGGWDLEDSVELAKALKELGVDL--IDVSSGG 264 (336)
T ss_pred HHcCCCceEEEEEcc-ccc-------C--CCCCCHHHHHHHHHHHHHcCCCE--EEECCCC
Confidence 456677889999998 421 1 44778899999988888888765 4555554
No 72
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=58.02 E-value=36 Score=25.66 Aligned_cols=48 Identities=17% Similarity=0.098 Sum_probs=37.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEEe------------eCCCCCChHHHHHHHHHHHH
Q 048797 71 KCGANLAEIGALLEAALASQLGVVGISFH------------IGSGATDFGAFDGAISAAKA 119 (240)
Q Consensus 71 kFG~~~~~~~~~l~~a~~~~l~~~Glh~H------------~gS~~~~~~~~~~~i~~~~~ 119 (240)
-|=+..+|+..+++..++.|+++.-||=| +.+. -|+..|.+.++.+.+
T Consensus 62 d~vll~~EV~pvi~aL~~~GI~vtAlHNH~l~e~Prl~ymH~~~~-gdp~~lA~~vr~Ald 121 (123)
T PF07485_consen 62 DFVLLEDEVNPVISALRKNGIEVTALHNHWLFEQPRLFYMHIWGV-GDPAKLARKVRAALD 121 (123)
T ss_pred cEEecHHHHHHHHHHHHHCCceEEEEecccccCCCCEEEEEEEec-CCHHHHHHHHHHHHh
Confidence 57888899999999999999999999955 4332 367777777776543
No 73
>PRK13773 formimidoylglutamase; Provisional
Probab=57.06 E-value=82 Score=27.74 Aligned_cols=91 Identities=16% Similarity=0.084 Sum_probs=55.2
Q ss_pred cCCCCCHHHHHHHHHCCCCccCHHHHc------------cccCCCCcEEEEEeeCCCCC-Cccc-CCCCCCCCCCHHHHH
Q 048797 15 TVALRNENGLAEALGSNFDYASQAEIK------------GKWHPRCDLLIRIKALDDCK-AVCP-QAQDSKCGANLAEIG 80 (240)
Q Consensus 15 ~gp~K~~~~l~~A~~~gv~~~s~~EL~------------~~~~~~~~v~lRi~~~~~~~-~~~~-~~~~skFG~~~~~~~ 80 (240)
.+|..+.++.+++.+.|+.+++.+|+. ......-.|.|=+.. +.-. +..+ .++....|++..|+.
T Consensus 196 r~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~vylS~Di-D~lDps~aPGtgtP~pgGlt~~E~~ 274 (324)
T PRK13773 196 SEPNNTRALFDTARELGVRYLLDEECQVMDRAAVRVFVADFLADVDVIYLTIDL-DVLPAAVAPGVSAPAAYGVPLEVIQ 274 (324)
T ss_pred CcccccHHHHHHHHHcCCEEEEHHHhhhcCHHHHHHHHHHHHhcCCeEEEEEee-CcCCcccCCCCCCCCCCCCCHHHHH
Confidence 345557788899999998766666652 111111246666665 4222 2122 234568999999999
Q ss_pred HHHHHHHhCCCcEEEEEEeeCCCCCCh
Q 048797 81 ALLEAALASQLGVVGISFHIGSGATDF 107 (240)
Q Consensus 81 ~~l~~a~~~~l~~~Glh~H~gS~~~~~ 107 (240)
++++.+.+.+ +++|+.+---+-..|.
T Consensus 275 ~ll~~l~~~~-~vvg~DvvE~~P~~D~ 300 (324)
T PRK13773 275 AVCDRVAASG-KLALVDVAELNPRFDI 300 (324)
T ss_pred HHHHHHHhcC-CEEEEEEEEECCccCC
Confidence 9999875443 5777776543433443
No 74
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=56.67 E-value=1.1e+02 Score=27.19 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHH
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKA 119 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~ 119 (240)
+.+.+++.+.++.+++.|+.-+.+++..|--..+.+.|.+.++.+.+
T Consensus 132 ~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~~ 178 (360)
T TIGR00539 132 QHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAKE 178 (360)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHHc
Confidence 45688999999999999987778999998766788888887776543
No 75
>TIGR01227 hutG formimidoylglutamase. Formiminoglutamase, the fourth enzyme of histidine degradation, is similar to arginases and agmatinases. It is often encoded near other enzymes of the histidine degredation pathway: histidine ammonia-lyase, urocanate hydratase, and imidazolonepropionase.
Probab=55.65 E-value=96 Score=27.02 Aligned_cols=97 Identities=15% Similarity=0.119 Sum_probs=59.7
Q ss_pred CCcEEEcCCCC---CHHHHHHHHHCCCCccCHHHHc-----------ccc-CCCCcEEEEEeeCCCCC-Cccc-CCCCCC
Q 048797 9 GKSVSLTVALR---NENGLAEALGSNFDYASQAEIK-----------GKW-HPRCDLLIRIKALDDCK-AVCP-QAQDSK 71 (240)
Q Consensus 9 ~~~Ii~~gp~K---~~~~l~~A~~~gv~~~s~~EL~-----------~~~-~~~~~v~lRi~~~~~~~-~~~~-~~~~sk 71 (240)
+.++++-|--. +.++.+++.++|+.+++.+|+. ... ...-.|.|=+.. +.-. +..+ .+....
T Consensus 177 ~~~~~~iGiR~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~vyvs~Di-DvlDps~aPgtg~p~p 255 (307)
T TIGR01227 177 DFHYAVLGIRRFSNTQALFDYAKKLGVRYVTDDALRPGLLPTIKDILPVFLDKVDHIYLTVDM-DVLDAAHAPGVSAPAP 255 (307)
T ss_pred CCcEEEEEecCCCCCHHHHHHHHHCCCEEEEHHHhhhcCHHHHHHHHHHHHhCCCeEEEEEEe-cccChhhCCCCCCCCC
Confidence 45677666533 5688999999998776444443 111 112246776666 4321 1111 233458
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCCh
Q 048797 72 CGANLAEIGALLEAALASQLGVVGISFHIGSGATDF 107 (240)
Q Consensus 72 FG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~ 107 (240)
.|++..|+.++++.+.+. -+++|+.+--=+-..|.
T Consensus 256 gGLt~~e~~~il~~l~~~-~~vvg~DvvE~~P~~D~ 290 (307)
T TIGR01227 256 GGLYPDELLELVKRIAAS-DKVRGAEIAEVNPTLDF 290 (307)
T ss_pred CCCCHHHHHHHHHHHhcC-CCEEEEEEEEECCCCCC
Confidence 899999999999887543 36788887754544554
No 76
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=55.21 E-value=50 Score=26.73 Aligned_cols=18 Identities=11% Similarity=0.006 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHCCCCcc
Q 048797 18 LRNENGLAEALGSNFDYA 35 (240)
Q Consensus 18 ~K~~~~l~~A~~~gv~~~ 35 (240)
.++.++++.|.+.|+..+
T Consensus 6 i~~~ed~~~a~~~Gvd~i 23 (203)
T cd00405 6 ITTLEDALAAAEAGADAI 23 (203)
T ss_pred CCCHHHHHHHHHcCCCEE
Confidence 478899999999998765
No 77
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=55.16 E-value=70 Score=28.42 Aligned_cols=49 Identities=20% Similarity=0.168 Sum_probs=34.1
Q ss_pred ccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCC-CcEEEEEEeeCCC
Q 048797 43 KWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQ-LGVVGISFHIGSG 103 (240)
Q Consensus 43 ~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~-l~~~Glh~H~gS~ 103 (240)
..+++..|.+|+++ .+. . +=|.+.+|..++++...+.| +++ ||+|.|+.
T Consensus 204 ~vg~~~~v~iRl~~-~~~-------~--~~G~~~~e~~~~~~~l~~~G~vd~--i~vs~g~~ 253 (343)
T cd04734 204 AVGPDFIVGIRISG-DED-------T--EGGLSPDEALEIAARLAAEGLIDY--VNVSAGSY 253 (343)
T ss_pred HcCCCCeEEEEeeh-hhc-------c--CCCCCHHHHHHHHHHHHhcCCCCE--EEeCCCCC
Confidence 34566789999998 431 1 33788999988888888877 664 56666553
No 78
>PRK13776 formimidoylglutamase; Provisional
Probab=54.98 E-value=1e+02 Score=27.11 Aligned_cols=88 Identities=17% Similarity=0.103 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHCCCCccCHHHHc--------cc----cCCCCcEEEEEeeCCCCC-Cccc-CCCCCCCCCCHHHHHHHHH
Q 048797 19 RNENGLAEALGSNFDYASQAEIK--------GK----WHPRCDLLIRIKALDDCK-AVCP-QAQDSKCGANLAEIGALLE 84 (240)
Q Consensus 19 K~~~~l~~A~~~gv~~~s~~EL~--------~~----~~~~~~v~lRi~~~~~~~-~~~~-~~~~skFG~~~~~~~~~l~ 84 (240)
.+.++.+++.+.|+.+++..|+. .+ ......|.|=+.. +.-. +..+ .++....|++..|+.++++
T Consensus 199 ~~~~~~~~~~~~g~~~~~~~ei~~~g~~~v~~~~~~~~~~~~~vyvS~Di-D~lDps~aPGtgtP~pgGLt~~e~~~il~ 277 (318)
T PRK13776 199 NTAALFERAKQLGVRYLSDEDMYEWSLARILAFLDDFIANVDHIYLTICL-DVLPAAVAPGVSAPAARGVSLWVIEPLVK 277 (318)
T ss_pred CCHHHHHHHHHcCCEEEEHHHhhhcCHHHHHHHHHHHHhcCCeEEEEEEe-CCcCcccCCCCCCCCCCCCCHHHHHHHHH
Confidence 35788899999998766555553 11 1112246666655 4221 2222 2445689999999999999
Q ss_pred HHHhCCCcEEEEEEeeCCCCCChH
Q 048797 85 AALASQLGVVGISFHIGSGATDFG 108 (240)
Q Consensus 85 ~a~~~~l~~~Glh~H~gS~~~~~~ 108 (240)
.+.+.+ +++|+.+---+-.+|..
T Consensus 278 ~l~~~~-~vvg~DvvEv~P~~D~~ 300 (318)
T PRK13776 278 RIIASG-KLRLADIAELNPPLDID 300 (318)
T ss_pred HHHccC-CEEEEEEEEECCCCCCC
Confidence 875443 67888876545445543
No 79
>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex. BRCC36 (BRCA1-A complex subunit BRCC36; BRCA1/BRCA2-containing complex subunit 36; BRCA1/BRCA2-containing complex subunit 3; BRCC3; BRISC complex subunit BRCC36; BRCC36 isopeptidase complex; Lys-63-specific deubiquitinase BRCC36) and BRCC36-like domains are members of JAMM/MPN+ deubiquitinases (DUBs), possibly with Zn2+-dependent ubiquitin isopeptidase activity. BRCC36 is part of the BRCA1/BRCA2/BARD1-containing nuclear complex that displays an E3 ubiquitin ligase activity. It is targeted to DNA damage foci after irradiation; RAP80 recruits the Abraxas-BRCC36-BRCA1-BARD1 complex to DNA double strand breaks (DSBs) for DNA repair through specific recognition of Lys 63-linked polyubiquitinated proteins by its tandem ubiquitin-interacting motifs. A new protein, MERIT40 (mediator of RAP80 interactions and targeting 40 kDa), also named NBA1 (new component of the BRCA1 A complex), exists in the same BRCA1-contai
Probab=54.96 E-value=16 Score=31.02 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=29.9
Q ss_pred CCCCCCHHHHHHHHHHHHh------CCCcEEEE-EEeeCCCC
Q 048797 70 SKCGANLAEIGALLEAALA------SQLGVVGI-SFHIGSGA 104 (240)
Q Consensus 70 skFG~~~~~~~~~l~~a~~------~~l~~~Gl-h~H~gS~~ 104 (240)
.+|-+++++..++.+.+.+ .+++++|+ |-|.++..
T Consensus 62 ~r~eidPee~~~a~~ea~~~~~~~~rgl~vVGwYHSHP~~~a 103 (244)
T cd08068 62 DRVEISPEQLSAASTEAERLTEETGRPMRVVGWYHSHPHITV 103 (244)
T ss_pred ceEEeCHHHHHHHHHHHHHHHhhccCCceEEEEEecCCCCCC
Confidence 3899999998888888887 88999997 88988765
No 80
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=54.82 E-value=44 Score=30.01 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCC-----CCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGS-----GATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH 138 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS-----~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld 138 (240)
|+|.+=+..+| ++.|.+++|+|+-.+. .|...+.+.. +..+.+ .+|+ ++..+|
T Consensus 13 GVDSSVaA~lL---k~QGyeViGl~m~~~~~~~~~~C~s~~d~~d----a~~va~----~LGI--p~~~vd 70 (356)
T COG0482 13 GVDSSVAAYLL---KEQGYEVIGLFMKNWDEDGGGGCCSEEDLRD----AERVAD----QLGI--PLYVVD 70 (356)
T ss_pred CHHHHHHHHHH---HHcCCeEEEEEEEeeccCCCCcCCchhHHHH----HHHHHH----HhCC--ceEEEc
Confidence 77766555444 4559999999998776 3444444444 334443 3899 898898
No 81
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=54.47 E-value=40 Score=28.45 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhCCCcEEEEEE-eeCCCCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 78 EIGALLEAALASQLGVVGISF-HIGSGATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 78 ~~~~~l~~a~~~~l~~~Glh~-H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
.+...++.|+.+|.+.+-+|. |.+......+.|++.++...++.+. +++.|+
T Consensus 91 ~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-a~~~gv 143 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEY-AENIGM 143 (275)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 455567788888887654432 3333333445677777777777777 777787
No 82
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=54.08 E-value=69 Score=27.03 Aligned_cols=58 Identities=14% Similarity=0.128 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEE--eeCCC--CCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 72 CGANLAEIGALLEAALASQLGVVGISF--HIGSG--ATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 72 FG~~~~~~~~~l~~a~~~~l~~~Glh~--H~gS~--~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
.+.+.+++.++.+.+++.||.+.++.+ |..-. ..+++...++++..++.++. ++.+|.
T Consensus 47 ~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~-a~~lG~ 108 (284)
T PRK13210 47 LDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRL-AQDLGI 108 (284)
T ss_pred ccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHH-HHHhCC
Confidence 345566777777888888988877642 21100 13566677777777777777 777766
No 83
>PRK13774 formimidoylglutamase; Provisional
Probab=53.63 E-value=1e+02 Score=26.91 Aligned_cols=87 Identities=17% Similarity=0.169 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHCCCCccCHHHHc-----------ccc-CCCCcEEEEEeeCCCCC-Cccc-CCCCCCCCCCHHHHHHHHH
Q 048797 19 RNENGLAEALGSNFDYASQAEIK-----------GKW-HPRCDLLIRIKALDDCK-AVCP-QAQDSKCGANLAEIGALLE 84 (240)
Q Consensus 19 K~~~~l~~A~~~gv~~~s~~EL~-----------~~~-~~~~~v~lRi~~~~~~~-~~~~-~~~~skFG~~~~~~~~~l~ 84 (240)
.+.++.+++.+.|+.+++.+|+. +.. .....|.|=+.. +.-. +..+ .++....|++..|+.++++
T Consensus 194 ~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~vyvS~Di-D~lDps~aPGtgtP~pgGLt~~e~l~il~ 272 (311)
T PRK13774 194 NTQSLFDYAKEKKIDYVFADELLSHVSPTIKDMIERFIHEHDVIMFTICM-DVIDSAFAPGVSAPAVLGLYPHTVLELAK 272 (311)
T ss_pred CCHHHHHHHHHcCCEEEEHHHhhhhhHHHHHHHHHHHHhcCCeEEEEEee-CCcChhhCCCCCCCCCCCCCHHHHHHHHH
Confidence 35788999999998777444442 111 112246666665 4221 2222 2446689999999999998
Q ss_pred HHHhCCCcEEEEEEeeCCCCCCh
Q 048797 85 AALASQLGVVGISFHIGSGATDF 107 (240)
Q Consensus 85 ~a~~~~l~~~Glh~H~gS~~~~~ 107 (240)
.+.+.+ +++|+.+--=+-.+|.
T Consensus 273 ~l~~~~-~v~g~DivE~nP~~D~ 294 (311)
T PRK13774 273 RIIPSD-KVSSVSIAEMNPTYDA 294 (311)
T ss_pred HHHhcC-CEEEEEEEEECCCCCC
Confidence 775443 6788877644444454
No 84
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=53.28 E-value=68 Score=27.20 Aligned_cols=58 Identities=10% Similarity=0.134 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEEeeC----CCCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 72 CGANLAEIGALLEAALASQLGVVGISFHIG----SGATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 72 FG~~~~~~~~~l~~a~~~~l~~~Glh~H~g----S~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
.+.+.++..++.+.+++.|+++.++.+-.. -...+++...++++.+++.++. ++.+|.
T Consensus 47 ~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~-a~~lG~ 108 (279)
T TIGR00542 47 LDWSREQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQL-ARDLGI 108 (279)
T ss_pred cCCCHHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHHH-HHHhCC
Confidence 345566677777777777887776653110 0112556666666666666666 665655
No 85
>PRK01060 endonuclease IV; Provisional
Probab=53.07 E-value=54 Score=27.74 Aligned_cols=56 Identities=14% Similarity=0.059 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEeeCC----CCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 74 ANLAEIGALLEAALASQLGVVGISFHIGS----GATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 74 ~~~~~~~~~l~~a~~~~l~~~Glh~H~gS----~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
.+.+++.++-+.+++.|+++.++..|..- ...+++...++++.+++.++. ++++|.
T Consensus 44 ~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~~~i~~-A~~lga 103 (281)
T PRK01060 44 LEELNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLIQEIER-CAALGA 103 (281)
T ss_pred CCHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 46677777777788889887666666532 123567777888888888877 777776
No 86
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=52.45 E-value=82 Score=28.62 Aligned_cols=47 Identities=13% Similarity=0.167 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHH
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKA 119 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~ 119 (240)
+.+.+++.++++.+++.|++-+.+.+-.|--..+.+.|.+.++.+.+
T Consensus 147 ~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~ 193 (400)
T PRK07379 147 SHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLEAAIA 193 (400)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHc
Confidence 67889999999999999988778888888666688888887776543
No 87
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=52.28 E-value=90 Score=26.39 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEE--eeCC--CCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 71 KCGANLAEIGALLEAALASQLGVVGISF--HIGS--GATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 71 kFG~~~~~~~~~l~~a~~~~l~~~Glh~--H~gS--~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
..+.+.+++.++.+.+++.|+++.++.+ |..- ...+++...++++.+++.++. ++.+|.
T Consensus 51 ~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~-a~~lG~ 113 (283)
T PRK13209 51 RLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKAIQL-AQDLGI 113 (283)
T ss_pred ccCCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 4466777888888888899999887653 3210 113566667777778888877 777776
No 88
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=52.17 E-value=72 Score=26.61 Aligned_cols=46 Identities=20% Similarity=-0.007 Sum_probs=23.3
Q ss_pred CCCCCHH----HHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHH
Q 048797 71 KCGANLA----EIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISA 116 (240)
Q Consensus 71 kFG~~~~----~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~ 116 (240)
|++.+.+ ++.+.++.+++.|+++..--..+..-..+++.+.+.++.
T Consensus 105 ~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~ 154 (265)
T cd03174 105 NLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKA 154 (265)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHH
Confidence 4555553 455566677777776432222332212455555544443
No 89
>PF12224 Amidoligase_2: Putative amidoligase enzyme; InterPro: IPR022025 This family of proteins are likely to act as amidoligase enzymes [] Protein in this family are found in conserved gene neighbourhoods encoding a glutamine amidotransferase-like thiol peptidase (in proteobacteria) or an Aig2 family cyclotransferase protein (in firmicutes) [].
Probab=51.98 E-value=91 Score=25.95 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhCCC----cEEEEEEeeCCCCCC--hHHHHHHHH
Q 048797 76 LAEIGALLEAALASQL----GVVGISFHIGSGATD--FGAFDGAIS 115 (240)
Q Consensus 76 ~~~~~~~l~~a~~~~l----~~~Glh~H~gS~~~~--~~~~~~~i~ 115 (240)
.+++.++++..++.+- .-.|+|.|+|-+..+ ++.+++.+.
T Consensus 91 ~~~i~~~~~~lr~~~~~~~~~scg~HVHv~~~~~~~~~~~l~~l~~ 136 (252)
T PF12224_consen 91 LEEIDKVLEALRRNGAIGTNDSCGFHVHVGPEPPSFSLETLKRLAK 136 (252)
T ss_pred HHHHHHHHHHHHHcCCccccCCeeEEEEECCCCCCccHHHHHHHHH
Confidence 5667777776666432 238999999876655 555555443
No 90
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=51.75 E-value=38 Score=30.20 Aligned_cols=43 Identities=19% Similarity=0.205 Sum_probs=32.1
Q ss_pred CCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEE
Q 048797 46 PRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGISF 98 (240)
Q Consensus 46 ~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~l~~~Glh~ 98 (240)
++..|.+|+++ .+.. +=|++.+|..++++.+.+.|++.+.+|.
T Consensus 214 ~~~~v~~R~s~-~~~~---------~~g~~~ee~~~i~~~L~~~GvD~I~Vs~ 256 (353)
T cd04735 214 KDFILGYRFSP-EEPE---------EPGIRMEDTLALVDKLADKGLDYLHISL 256 (353)
T ss_pred CCceEEEEECc-cccc---------CCCCCHHHHHHHHHHHHHcCCCEEEecc
Confidence 67889999998 4211 2278899999999999888987655543
No 91
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=49.75 E-value=1.4e+02 Score=27.28 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHH
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKA 119 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~ 119 (240)
+.+.+++.+.++.+++.|+..+.+++-.|--..+.+.|.+.++.+.+
T Consensus 173 ~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~ 219 (430)
T PRK08208 173 PQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQALV 219 (430)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHh
Confidence 55788999999999999998888888888766788888887776543
No 92
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=49.66 E-value=19 Score=32.02 Aligned_cols=47 Identities=11% Similarity=-0.038 Sum_probs=32.1
Q ss_pred cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEE
Q 048797 42 GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGI 96 (240)
Q Consensus 42 ~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~l~~~Gl 96 (240)
+...+. .|++|+++ .+.. .+. .+|.+.+|..++++.+.+.+++.+-+
T Consensus 214 ~~vg~d-~v~vRis~-~~~~----~~~--~~~~~~ee~~~~~~~l~~~g~d~i~v 260 (338)
T cd02933 214 EAIGAD-RVGIRLSP-FGTF----NDM--GDSDPEATFSYLAKELNKRGLAYLHL 260 (338)
T ss_pred HHhCCC-ceEEEECc-cccC----CCC--CCCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 344555 49999998 4311 112 57889999999998888888765433
No 93
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=49.46 E-value=1e+02 Score=27.70 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=38.2
Q ss_pred EEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHH--------HHHHHHHHHHH
Q 048797 51 LIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFD--------GAISAAKAVFD 122 (240)
Q Consensus 51 ~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~--------~~i~~~~~~~~ 122 (240)
.||||| . -+|-..+.+.++++.|++.++-+ -+-...|| ++.+... ..++.+.+.++
T Consensus 104 ~iRINP-G------------Nig~~~~~v~~vv~~ak~~~ipI-RIGvN~GS--L~~~~~~~yg~~t~eamveSAl~~~~ 167 (360)
T PRK00366 104 ALRINP-G------------NIGKRDERVREVVEAAKDYGIPI-RIGVNAGS--LEKDLLEKYGEPTPEALVESALRHAK 167 (360)
T ss_pred EEEECC-C------------CCCchHHHHHHHHHHHHHCCCCE-EEecCCcc--ChHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 468888 4 34555678899999999999753 23334455 4443322 23455555555
Q ss_pred HHHHhCCC
Q 048797 123 AASARHGL 130 (240)
Q Consensus 123 ~l~~~~g~ 130 (240)
. .+++|+
T Consensus 168 ~-le~~~f 174 (360)
T PRK00366 168 I-LEELGF 174 (360)
T ss_pred H-HHHCCC
Confidence 5 556666
No 94
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=49.03 E-value=1.6e+02 Score=25.06 Aligned_cols=13 Identities=38% Similarity=0.266 Sum_probs=6.6
Q ss_pred HHHHHHHHHCCCC
Q 048797 21 ENGLAEALGSNFD 33 (240)
Q Consensus 21 ~~~l~~A~~~gv~ 33 (240)
.++++.|.+.|+.
T Consensus 85 ~~~l~~a~~~gv~ 97 (266)
T cd07944 85 IDLLEPASGSVVD 97 (266)
T ss_pred HHHHHHHhcCCcC
Confidence 4455555555544
No 95
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=48.31 E-value=37 Score=28.82 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeCCCC--CChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 76 LAEIGALLEAALASQLGVVGISFHIGSGA--TDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 76 ~~~~~~~l~~a~~~~l~~~Glh~H~gS~~--~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
.+.+..+++.|+++|.+.+ -+|.|+.. ...+.|...++.+.++.+. +++.|+
T Consensus 84 ~~~~~~~i~~A~~lG~~~v--~~~~g~~~~~~~~~~~~~~~~~l~~l~~~-a~~~gi 137 (279)
T cd00019 84 IERLKDEIERCEELGIRLL--VFHPGSYLGQSKEEGLKRVIEALNELIDK-AETKGV 137 (279)
T ss_pred HHHHHHHHHHHHHcCCCEE--EECCCCCCCCCHHHHHHHHHHHHHHHHHh-ccCCCC
Confidence 3467778888999998864 45677643 2345677777777777776 666676
No 96
>PRK13772 formimidoylglutamase; Provisional
Probab=48.16 E-value=1.6e+02 Score=25.77 Aligned_cols=87 Identities=15% Similarity=0.116 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHCCCCccCHHHHc------------cccCCCCcEEEEEeeCCCCC-Cccc-CCCCCCCCCCHHHHHHHHH
Q 048797 19 RNENGLAEALGSNFDYASQAEIK------------GKWHPRCDLLIRIKALDDCK-AVCP-QAQDSKCGANLAEIGALLE 84 (240)
Q Consensus 19 K~~~~l~~A~~~gv~~~s~~EL~------------~~~~~~~~v~lRi~~~~~~~-~~~~-~~~~skFG~~~~~~~~~l~ 84 (240)
.++++..++.+.|+.+++..|+. ......-.|.|=+.. +.-. +..+ .++....|++..|+.++++
T Consensus 198 ~~~~~~~~~~~~g~~~~~~~e~~~~g~~~~~~~i~~~l~~~~~vylS~Di-D~lDps~aPGvgtP~pgGlt~~e~~~il~ 276 (314)
T PRK13772 198 NTPALFARADALGVRYVEDVDMQERHLDARLAELDALLDAADHVYLTIDL-DVLPAAVAPGVSAPAAYGVPLPVVEEIVL 276 (314)
T ss_pred CChhHHHHHHhCCeEEEEhhhhhhcCHHHHHHHHHHHHhcCCeEEEEEEe-cCcCcccCCCCCCCCCCCCCHHHHHHHHH
Confidence 47788899999998766333331 111112346666665 4221 2222 2445689999999999998
Q ss_pred HHHhCCCcEEEEEEeeCCCCCCh
Q 048797 85 AALASQLGVVGISFHIGSGATDF 107 (240)
Q Consensus 85 ~a~~~~l~~~Glh~H~gS~~~~~ 107 (240)
.+.+.+ +++|+.+--=+-.+|.
T Consensus 277 ~l~~~~-~v~g~DvvEv~P~~D~ 298 (314)
T PRK13772 277 HVRASG-KLRVADLAEYNPQYDR 298 (314)
T ss_pred HHHhcC-CeeEEEEEEECCCCCC
Confidence 875543 6778877544444454
No 97
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=48.03 E-value=54 Score=27.64 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCC--CcEEEEEEeeCCCCCChHHHHHHH
Q 048797 78 EIGALLEAALASQ--LGVVGISFHIGSGATDFGAFDGAI 114 (240)
Q Consensus 78 ~~~~~l~~a~~~~--l~~~Glh~H~gS~~~~~~~~~~~i 114 (240)
...++++.+++.| ++-+|++.|..+...+++.+.+.+
T Consensus 137 ~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l 175 (254)
T smart00633 137 AIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAAL 175 (254)
T ss_pred HHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHH
Confidence 4566666666665 577999999876544444443333
No 98
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=46.51 E-value=1.3e+02 Score=25.56 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=14.1
Q ss_pred CCCCCHHHH----HHHHHHHHhCCCc
Q 048797 71 KCGANLAEI----GALLEAALASQLG 92 (240)
Q Consensus 71 kFG~~~~~~----~~~l~~a~~~~l~ 92 (240)
++|.+.+++ .++++.+++.|+.
T Consensus 102 ~~~~~~~e~~~~~~~~i~~a~~~G~~ 127 (262)
T cd07948 102 SHGKSITEIIESAVEVIEFVKSKGIE 127 (262)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHCCCe
Confidence 677777763 3344667777765
No 99
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=46.06 E-value=55 Score=27.34 Aligned_cols=78 Identities=15% Similarity=0.083 Sum_probs=49.2
Q ss_pred CCCCCcEEEcCCCCCH---------HHHHHHHHCCCCcc---------CHHHHc--cccCCCCcEEEEEeeCCCCCCccc
Q 048797 6 GVSGKSVSLTVALRNE---------NGLAEALGSNFDYA---------SQAEIK--GKWHPRCDLLIRIKALDDCKAVCP 65 (240)
Q Consensus 6 G~~~~~Ii~~gp~K~~---------~~l~~A~~~gv~~~---------s~~EL~--~~~~~~~~v~lRi~~~~~~~~~~~ 65 (240)
|-++.--|-|||.-+. .-+.+..+.|+.-+ +++|+. ++.- ++-.+++.|
T Consensus 114 G~~G~VkISTGp~Ss~~~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~ac--a~~g~~lEP--------- 182 (236)
T TIGR03581 114 GTPGLVNISTGPLSSQGKEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKAC--AKHGFYLEP--------- 182 (236)
T ss_pred CccceEEeccCcccccCCCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHH--HHcCCccCC---------
Confidence 4555556677875543 23444556776543 889998 2221 111223444
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEe
Q 048797 66 QAQDSKCGANLAEIGALLEAALASQLGVVGISFH 99 (240)
Q Consensus 66 ~~~~skFG~~~~~~~~~l~~a~~~~l~~~Glh~H 99 (240)
.+ ||+.+.+.++++.+.+.|++.+=-|.+
T Consensus 183 -TG----GIdl~Nf~~I~~i~ldaGv~kviPHIY 211 (236)
T TIGR03581 183 -TG----GIDLDNFEEIVQIALDAGVEKVIPHVY 211 (236)
T ss_pred -CC----CccHHhHHHHHHHHHHcCCCeeccccc
Confidence 23 899999999999999999876656655
No 100
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=45.57 E-value=71 Score=28.73 Aligned_cols=45 Identities=13% Similarity=0.215 Sum_probs=31.5
Q ss_pred ccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCCCcE
Q 048797 43 KWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGV 93 (240)
Q Consensus 43 ~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~l~~ 93 (240)
..+++..|++|+++ .... .... +.|.+++|..++++.+.+.|+++
T Consensus 207 ~vG~d~~v~vRis~-~~~~---~~~~--~~g~~~~e~~~~~~~l~~~gvd~ 251 (361)
T cd04747 207 AVGPDFPIILRFSQ-WKQQ---DYTA--RLADTPDELEALLAPLVDAGVDI 251 (361)
T ss_pred HcCCCCeEEEEECc-cccc---cccc--CCCCCHHHHHHHHHHHHHcCCCE
Confidence 34566789999997 3211 1112 45789999988888888888877
No 101
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=45.26 E-value=65 Score=28.62 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=33.2
Q ss_pred CCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCC
Q 048797 47 RCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGISFHIGSG 103 (240)
Q Consensus 47 ~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~ 103 (240)
+..|++|+++ .+.. +=|.+++|..++++...+.|++ -||+|.|+.
T Consensus 207 ~~~v~vRis~-~d~~---------~~G~~~~e~~~i~~~l~~~gvD--~i~vs~g~~ 251 (337)
T PRK13523 207 DGPLFVRISA-SDYH---------PGGLTVQDYVQYAKWMKEQGVD--LIDVSSGAV 251 (337)
T ss_pred CCCeEEEecc-cccC---------CCCCCHHHHHHHHHHHHHcCCC--EEEeCCCCC
Confidence 3579999998 4321 1278899999999888888875 477788874
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=44.62 E-value=17 Score=34.36 Aligned_cols=68 Identities=22% Similarity=0.368 Sum_probs=54.0
Q ss_pred cEEEEEeeCCCCCCcccCCCCCCCCCCH------HHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHH
Q 048797 49 DLLIRIKALDDCKAVCPQAQDSKCGANL------AEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFD 122 (240)
Q Consensus 49 ~v~lRi~~~~~~~~~~~~~~~skFG~~~------~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~ 122 (240)
+-.|+++| .+ ..++. |.|.++ +|+.+++++|.++.-.++..-..+|-.+.+...|++|+......+.
T Consensus 454 ~~AL~v~P-nd----~~lWN--RLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 454 EAALQVKP-ND----YLLWN--RLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHhcCC-ch----HHHHH--HhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 44577777 32 22344 777765 5899999999998878888999999889999999999999888877
Q ss_pred H
Q 048797 123 A 123 (240)
Q Consensus 123 ~ 123 (240)
.
T Consensus 527 m 527 (579)
T KOG1125|consen 527 M 527 (579)
T ss_pred h
Confidence 6
No 103
>PRK08105 flavodoxin; Provisional
Probab=44.26 E-value=1.5e+02 Score=22.85 Aligned_cols=101 Identities=14% Similarity=0.153 Sum_probs=57.1
Q ss_pred cEEEcCCCCCHHHHHHHH-----HCCCCcc--CHHHHccccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHH
Q 048797 11 SVSLTVALRNENGLAEAL-----GSNFDYA--SQAEIKGKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALL 83 (240)
Q Consensus 11 ~Ii~~gp~K~~~~l~~A~-----~~gv~~~--s~~EL~~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l 83 (240)
.|+|..-.-+-+++...+ +.|+.+. +.+++.....+..+.++=+.+ .. -.|-.++.+.+.+
T Consensus 5 ~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~vi~~~s-T~-----------G~Ge~p~~~~~f~ 72 (149)
T PRK08105 5 GIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPELSDWQPYQDELVLVVTS-TT-----------GQGDLPDSIVPLF 72 (149)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhhCCchhcccCCeEEEEEC-CC-----------CCCCCChhHHHHH
Confidence 367777777777665443 4566544 655554211122334444443 10 2355566777777
Q ss_pred HHHHhCCCcEEEEEEee-CCCCCChHHHHHHHHHHHHHHHH
Q 048797 84 EAALASQLGVVGISFHI-GSGATDFGAFDGAISAAKAVFDA 123 (240)
Q Consensus 84 ~~a~~~~l~~~Glh~H~-gS~~~~~~~~~~~i~~~~~~~~~ 123 (240)
+..++....+.|+++.+ |.+..+.+.|..+.+...+.+..
T Consensus 73 ~~l~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~ 113 (149)
T PRK08105 73 QALKDTAGYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQE 113 (149)
T ss_pred HHHHhcCcccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHH
Confidence 66655433456777774 66555667788887776665555
No 104
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=43.07 E-value=1.3e+02 Score=25.35 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=19.2
Q ss_pred CC-CCHHHHHHHHHHHHhC-CCcEEEEEEeeCCC
Q 048797 72 CG-ANLAEIGALLEAALAS-QLGVVGISFHIGSG 103 (240)
Q Consensus 72 FG-~~~~~~~~~l~~a~~~-~l~~~Glh~H~gS~ 103 (240)
+| +.++++.++++..++. +...+|+|+|-.-+
T Consensus 164 ~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~G 197 (263)
T cd07943 164 AGAMLPDDVRERVRALREALDPTPVGFHGHNNLG 197 (263)
T ss_pred CCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcc
Confidence 44 4466777777766553 33246777776443
No 105
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=43.04 E-value=1.5e+02 Score=25.23 Aligned_cols=40 Identities=20% Similarity=0.045 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHH
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAI 114 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i 114 (240)
|-+.++..+.++.+++.|++ ++.|+-+|-+ .+.+.+.+.+
T Consensus 154 ~~s~~~~~~ai~~l~~~Gi~-v~~~~i~Gl~-et~~d~~~~~ 193 (296)
T TIGR00433 154 THTYDDRVDTLENAKKAGLK-VCSGGIFGLG-ETVEDRIGLA 193 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCE-EEEeEEEeCC-CCHHHHHHHH
Confidence 45788999999999999997 6788888873 3444444333
No 106
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=42.81 E-value=53 Score=29.00 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=35.4
Q ss_pred ccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCC
Q 048797 43 KWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGISFHIGSG 103 (240)
Q Consensus 43 ~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~ 103 (240)
..+++..|.+|+|+ .+. . +-|.+.+++.++++...+.++++ +|+|.|+.
T Consensus 212 avG~d~~v~vris~-~~~-------~--~~g~~~eea~~ia~~Le~~Gvd~--iev~~g~~ 260 (338)
T cd04733 212 AVGPGFPVGIKLNS-ADF-------Q--RGGFTEEDALEVVEALEEAGVDL--VELSGGTY 260 (338)
T ss_pred HcCCCCeEEEEEcH-HHc-------C--CCCCCHHHHHHHHHHHHHcCCCE--EEecCCCC
Confidence 34556789999997 321 1 44788999999998888888765 67777763
No 107
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=42.56 E-value=1.7e+02 Score=26.13 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHH--------HHHHHHHHHHHHHHhCCC
Q 048797 76 LAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDG--------AISAAKAVFDAASARHGL 130 (240)
Q Consensus 76 ~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~--------~i~~~~~~~~~l~~~~g~ 130 (240)
.+.+.++++.|++.++-+ -+-...|| ++.+...+ .++.+.+.++. .+++|+
T Consensus 107 ~e~v~~vv~~ak~~~ipI-RIGVN~GS--L~~~~~~kyg~~t~eamveSAl~~v~~-le~~~F 165 (346)
T TIGR00612 107 RERVRDVVEKARDHGKAM-RIGVNHGS--LERRLLEKYGDATAEAMVQSALEEAAI-LEKLGF 165 (346)
T ss_pred HHHHHHHHHHHHHCCCCE-EEecCCCC--CcHHHHHHcCCCCHHHHHHHHHHHHHH-HHHCCC
Confidence 678899999999998753 23334555 44333222 34555555555 566776
No 108
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=42.34 E-value=1.1e+02 Score=27.31 Aligned_cols=61 Identities=25% Similarity=0.375 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEee-------CCCCC-------ChHHHHHHH-HHHHHHHHHHHHhCCCCCCCCccc
Q 048797 74 ANLAEIGALLEAALASQLGVVGISFHI-------GSGAT-------DFGAFDGAI-SAAKAVFDAASARHGLTDQMRAKH 138 (240)
Q Consensus 74 ~~~~~~~~~l~~a~~~~l~~~Glh~H~-------gS~~~-------~~~~~~~~i-~~~~~~~~~l~~~~g~~~~~~~ld 138 (240)
++++++.++.++||+.|+++. |.||- |.|.. +.+...+++ ...++++.. .+..|+ .++++-
T Consensus 55 ~~~~~~~~~akrak~~Gm~vl-ldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~-l~~~G~--~pd~VQ 130 (332)
T PF07745_consen 55 NDLEDVIALAKRAKAAGMKVL-LDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQA-LKAAGV--TPDMVQ 130 (332)
T ss_dssp TSHHHHHHHHHHHHHTT-EEE-EEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHH-HHHTT----ESEEE
T ss_pred CCHHHHHHHHHHHHHCCCeEE-EeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHH-HHHCCC--CccEEE
Confidence 568899999999999999976 88886 33321 233333333 334567777 456788 666654
No 109
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=42.20 E-value=90 Score=27.17 Aligned_cols=43 Identities=14% Similarity=0.061 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHH
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISA 116 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~ 116 (240)
|.+.++..++++.+++.|+. +..|+-+|--..+.+.+.+.++.
T Consensus 159 g~t~~~~~~ai~~l~~~gi~-v~~~lI~GlPget~e~~~~t~~~ 201 (302)
T TIGR01212 159 GHDFACYVDAVKRARKRGIK-VCSHVILGLPGEDREEMMETAKI 201 (302)
T ss_pred cChHHHHHHHHHHHHHcCCE-EEEeEEECCCCCCHHHHHHHHHH
Confidence 67788999999999999997 56788888755566666665554
No 110
>PF00491 Arginase: Arginase family; InterPro: IPR006035 The ureohydrolase superfamily includes arginase (3.5.3.1 from EC), agmatinase (3.5.3.11 from EC), formiminoglutamase (3.5.3.8 from EC) and proclavaminate amidinohydrolase (3.5.3.22 from EC) []. These enzymes share a 3-layer alpha-beta-alpha structure [, , ], and play important roles in arginine/agmatine metabolism, the urea cycle, histidine degradation, and other pathways. Arginase, which catalyses the conversion of arginine to urea and ornithine, is one of the five members of the urea cycle enzymes that convert ammonia to urea as the principal product of nitrogen excretion []. There are several arginase isozymes that differ in catalytic, molecular and immunological properties. Deficiency in the liver isozyme leads to argininemia, which is usually associated with hyperammonemia. Agmatinase hydrolyses agmatine to putrescine, the precursor for the biosynthesis of higher polyamines, spermidine and spermine. In addition, agmatine may play an important regulatory role in mammals. Formiminoglutamase catalyses the fourth step in histidine degradation, acting to hydrolyse N-formimidoyl-L-glutamate to L-glutamate and formamide. Proclavaminate amidinohydrolase is involved in clavulanic acid biosynthesis. Clavulanic acid acts as an inhibitor of a wide range of beta-lactamase enzymes that are used by various microorganisms to resist beta-lactam antibiotics. As a result, this enzyme improves the effectiveness of beta-lactamase antibiotics [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0046872 metal ion binding; PDB: 4DZ4_A 3SL0_A 3MMR_A 3SL1_A 2EF5_D 2EIV_K 2EF4_A 3NIO_F 3THH_A 1WVA_A ....
Probab=42.13 E-value=91 Score=26.49 Aligned_cols=100 Identities=17% Similarity=0.056 Sum_probs=57.3
Q ss_pred CCCCCcEEEcCCC-CCHH-HHHHHHHCCCCccCHHHHc------------cccC-CCCcEEEEEeeCCCCC-Cccc-CCC
Q 048797 6 GVSGKSVSLTVAL-RNEN-GLAEALGSNFDYASQAEIK------------GKWH-PRCDLLIRIKALDDCK-AVCP-QAQ 68 (240)
Q Consensus 6 G~~~~~Ii~~gp~-K~~~-~l~~A~~~gv~~~s~~EL~------------~~~~-~~~~v~lRi~~~~~~~-~~~~-~~~ 68 (240)
.++++++++-|-- ...+ +.+++.+.|+.+++.+|++ +... ...+|.|=+.. +.-. +..+ .+.
T Consensus 143 ~~~~~~~v~iG~r~~~~~~e~~~~~~~~i~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~vylsiDi-DvlDp~~~pg~~~ 221 (277)
T PF00491_consen 143 LLDPENVVQIGIRSFDNESEYEYLKELGIKIFSADEIREDGIDAVLEEILEALGSGTDPVYLSIDI-DVLDPAFAPGVGT 221 (277)
T ss_dssp SSEGGGEEEEEE-STTHHHHHHHHHHTTSEEEEHHHHHHHHHHHHHHHHHHHHTTSTSEEEEEEEG-GGBBTTTSTSBSS
T ss_pred CcCcCcEEEEecccccchHHHHHHHHcCCEEEehhHhhhhhhhhHHHHHHHHHhcCCCeEEEEEeh-hhcChhhCCCcCC
Confidence 3566888877753 3444 6777888999877555443 2222 23478888876 5211 1111 122
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCCh
Q 048797 69 DSKCGANLAEIGALLEAALASQLGVVGISFHIGSGATDF 107 (240)
Q Consensus 69 ~skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~ 107 (240)
....|++.+|+.++++.+.+ .-+++|+.+---.-.+|.
T Consensus 222 p~pgGl~~~e~~~~l~~l~~-~~~vvg~di~E~~P~~D~ 259 (277)
T PF00491_consen 222 PEPGGLSPRELLQLLRALAR-SGKVVGLDIVEYNPDLDP 259 (277)
T ss_dssp -BSS-B-HHHHHHHHHHHHH-HSEEEEEEEE-B-GGGSS
T ss_pred CcCCCCCHHHHHHHHHHHcc-cCCeEEEEEEEECCCcCc
Confidence 33789999999999988654 236777776643433444
No 111
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=41.72 E-value=23 Score=27.58 Aligned_cols=28 Identities=21% Similarity=0.498 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEEee
Q 048797 71 KCGANLAEIGALLEAALASQLGVVGISFHI 100 (240)
Q Consensus 71 kFG~~~~~~~~~l~~a~~~~l~~~Glh~H~ 100 (240)
|+|+++|++.++++...... ++|++|..
T Consensus 94 ~~~v~~e~v~~li~ki~~~~--iiGiCFms 121 (147)
T PF09897_consen 94 KSGVTPEDVNELIKKISPKK--IIGICFMS 121 (147)
T ss_dssp TTS--HHHHHHHHHHHEEEE--EEEEEETT
T ss_pred CCCCCHHHHHHHHHHhCcCC--EEEEehHH
Confidence 89999999999998765433 89999863
No 112
>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]
Probab=41.19 E-value=52 Score=23.95 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=33.6
Q ss_pred eEEEeccCcCCCcccccCC-CCCCCCCEEEEcCCCccccccCC--CCCCCC
Q 048797 183 NSTVFGPTLDAYDKLFTGH-PELQVGNWLVFSQIGACTAVYGS--GFKGFN 230 (240)
Q Consensus 183 ~~~i~G~~C~~~D~l~~~~-p~l~~GD~l~~~~~GAY~~~~s~--~Fn~~~ 230 (240)
++.=+||- +.|.-++.. +.+++||.+.++..|+|...+.. +|..|.
T Consensus 47 ~VvavGpG--~~~~~G~~v~~~Vk~Gd~VLlpeygGt~V~l~~~~~~~~fr 95 (104)
T KOG1641|consen 47 TVVAVGPG--SRDKGGEIVPVSVKVGDRVLLPEYGGTKVKLGDEDEYHLFR 95 (104)
T ss_pred EEEEEcCc--cccCCCCCcCccccCCCEEEeeccCCcEEeccCCceeEEec
Confidence 34445765 556555555 49999999999999999999884 555443
No 113
>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase. This family includes histone H2A deubiquitinase (Histone H2A DUB;MYSM1; myb-like, SWIRM and MPN domains 1; 2ADUB; 2A-DUB; KIAA19152ADUB, or KIAA1915/MYSM1), a member of JAMM/MPN+ deubiquitinases (DUBs), with possible Zn2+-dependent ubiquitin isopeptidase activity. It contains the SWIRM (Swi3p, Rsc8p and Moira), and SANT (SWI-SNF, ADA N-CoR, TFIIIB)/Myb domains; the SANT, but not the SWIRM, domain can bind directly to DNA. 2A-DUB is specific for monoubiquitinated H2A (uH2A), regulating transcription by coordinating histone acetylation and deubiquitination, and destabilizing the association of linker histone H1 with nucleosomes. 2A-DUB interacts with p/CAF (p300/CBP-associated factor) in a co-regulatory protein complex, where the status of acetylation of nucleosomal histones modulates its deubiquitinase activity. 2A-DUB is a positive regulator of androgen receptor (AR) transactivation activity on a reporter gene; it p
Probab=40.85 E-value=52 Score=26.65 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEE-EEeeCCC
Q 048797 71 KCGANLAEIGALLEAALASQLGVVGI-SFHIGSG 103 (240)
Q Consensus 71 kFG~~~~~~~~~l~~a~~~~l~~~Gl-h~H~gS~ 103 (240)
+|-+++++-.++++.+++.|++++|+ |-|..+.
T Consensus 59 ~~e~dp~~q~e~~~~l~~~gl~vVGwYHSHP~~~ 92 (187)
T cd08067 59 DCEMDPVSETEIRESLESRGLSVVGWYHSHPTFP 92 (187)
T ss_pred ccccCHHHHHHHHHHHHHcCCEEEEEEecCCCCC
Confidence 78899988888999999999999987 8888776
No 114
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=40.83 E-value=88 Score=27.81 Aligned_cols=82 Identities=17% Similarity=0.175 Sum_probs=0.0
Q ss_pred CcccCCCCCCcEEEcCCC--CCHHHHHHHHHCCCCcc---------CHHHHc------cccCCCCcEEEEEeeCCCCCCc
Q 048797 1 MLNALGVSGKSVSLTVAL--RNENGLAEALGSNFDYA---------SQAEIK------GKWHPRCDLLIRIKALDDCKAV 63 (240)
Q Consensus 1 ~al~~G~~~~~Ii~~gp~--K~~~~l~~A~~~gv~~~---------s~~EL~------~~~~~~~~v~lRi~~~~~~~~~ 63 (240)
+|.++|++-=||.+.-.- ...+.+++|.++|..+. +.+++. .+.++.. +++.=
T Consensus 96 ~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~---i~i~D------- 165 (337)
T PRK08195 96 MAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQC---VYVVD------- 165 (337)
T ss_pred HHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCE---EEeCC-------
Q ss_pred ccCCCCCCCC-CCHHHHHHHHHHHHhCC--CcEEEEEEe
Q 048797 64 CPQAQDSKCG-ANLAEIGALLEAALASQ--LGVVGISFH 99 (240)
Q Consensus 64 ~~~~~~skFG-~~~~~~~~~l~~a~~~~--l~~~Glh~H 99 (240)
-+| +.++++.++++.+++.- -.-+|+|+|
T Consensus 166 -------T~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~H 197 (337)
T PRK08195 166 -------SAGALLPEDVRDRVRALRAALKPDTQVGFHGH 197 (337)
T ss_pred -------CCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeC
No 115
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=40.70 E-value=1e+02 Score=26.12 Aligned_cols=52 Identities=10% Similarity=-0.050 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeC-CCCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 78 EIGALLEAALASQLGVVGISFHIG-SGATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 78 ~~~~~l~~a~~~~l~~~Glh~H~g-S~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
.+...++.++.+|.+.+.++.... .+..+.+.|...++..+++.+. +++.|+
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-A~~~Gv 147 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVEL-AARAQV 147 (279)
T ss_pred HHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 356677788889988765542210 1223456678888888888887 777777
No 116
>COG3246 Uncharacterized conserved protein [Function unknown]
Probab=40.49 E-value=2.5e+02 Score=24.54 Aligned_cols=67 Identities=13% Similarity=0.190 Sum_probs=44.6
Q ss_pred cEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEee----CCCCCChHHHHHHHHHHHHH
Q 048797 49 DLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGISFHI----GSGATDFGAFDGAISAAKAV 120 (240)
Q Consensus 49 ~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~----gS~~~~~~~~~~~i~~~~~~ 120 (240)
+|.|-+.+ .+.......+. .-=++++|+.+-...+.+.|-.+ +|+|+ |...+|++.|+++++..++.
T Consensus 4 ~viItcAv-tGa~~T~~~~P--alP~TP~qIA~~a~~aa~AGAai--~HlHvRp~dG~pt~d~~~yr~~l~rIr~~ 74 (298)
T COG3246 4 KVIITCAV-TGARHTPADHP--ALPVTPDQIASDAIAAAKAGAAI--LHLHVRPEDGRPTLDPEAYREVLERIRAA 74 (298)
T ss_pred ceEEEEec-cCCcCCcccCC--CCCCCHHHHHHHHHHHHhcCcce--EEEEecCCCCCcccCHHHHHHHHHHHHcc
Confidence 45666665 33221111223 67788999888777777778765 66665 56778999999998877653
No 117
>PRK07094 biotin synthase; Provisional
Probab=40.35 E-value=1.8e+02 Score=25.18 Aligned_cols=45 Identities=20% Similarity=0.196 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHH
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAK 118 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~ 118 (240)
+.+.++..+.++.+++.|+. ++.++-+|--..+.+.+.+.++.++
T Consensus 161 ~~s~~~~~~~i~~l~~~Gi~-v~~~~iiGlpget~ed~~~~l~~l~ 205 (323)
T PRK07094 161 GMSFENRIACLKDLKELGYE-VGSGFMVGLPGQTLEDLADDILFLK 205 (323)
T ss_pred CCCHHHHHHHHHHHHHcCCe-ecceEEEECCCCCHHHHHHHHHHHH
Confidence 57789999999999999986 6888888864446666666555443
No 118
>cd08070 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding). This family contains archaeal and bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=39.97 E-value=39 Score=25.18 Aligned_cols=35 Identities=31% Similarity=0.202 Sum_probs=29.4
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCcEEEE-EEeeCCCC
Q 048797 70 SKCGANLAEIGALLEAALASQLGVVGI-SFHIGSGA 104 (240)
Q Consensus 70 skFG~~~~~~~~~l~~a~~~~l~~~Gl-h~H~gS~~ 104 (240)
..|=+++++..++.+.+++.+++++|+ |.|..+..
T Consensus 49 ~~f~~d~~~~~~~~~~~~~~g~~~vG~~HSHP~~~~ 84 (128)
T cd08070 49 RRFEIDPAEQLAAQREARERGLEVVGIYHSHPDGPA 84 (128)
T ss_pred ceEEECHHHHHHHHHHHHHCCCeEEEEEeCCCCCCC
Confidence 478899999999898898999999886 99987643
No 119
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=38.40 E-value=1.1e+02 Score=25.74 Aligned_cols=53 Identities=6% Similarity=-0.108 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEee-CCCCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 77 AEIGALLEAALASQLGVVGISFHI-GSGATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~-gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+.+..+++.|+.+|.+.+.++-.. .....+.+.+.+.++...++.+. +++.|+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-a~~~gv 147 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQ-AAAAQV 147 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHH-HHHhCC
Confidence 345678888999998877653111 01112345677777777777777 777777
No 120
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=37.91 E-value=2.1e+02 Score=25.76 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=36.7
Q ss_pred EEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHH-------HHHHHHHHHHHH
Q 048797 51 LIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFD-------GAISAAKAVFDA 123 (240)
Q Consensus 51 ~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~-------~~i~~~~~~~~~ 123 (240)
-+|||| .+-...+. . .-|=..+.+.++++.|++.++-+ -+-...|| ++.+... ..++.+.+.++.
T Consensus 97 kiRINP-GNi~~~~~--~--~~g~~~~~~~~vv~~ake~~ipI-RIGvN~GS--L~~~~~~ky~~t~~amvesA~~~~~~ 168 (359)
T PF04551_consen 97 KIRINP-GNIVDEFQ--E--ELGSIREKVKEVVEAAKERGIPI-RIGVNSGS--LEKDILEKYGPTPEAMVESALEHVRI 168 (359)
T ss_dssp EEEE-T-TTSS------S--S-SS-HHHHHHHHHHHHHHT-EE-EEEEEGGG--S-HHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred eEEECC-Cccccccc--c--cccchHHHHHHHHHHHHHCCCCE-EEeccccc--CcHHHHhhccchHHHHHHHHHHHHHH
Confidence 589999 53211000 0 01444778999999999999743 34445666 5544333 234455555555
Q ss_pred HHHhCCC
Q 048797 124 ASARHGL 130 (240)
Q Consensus 124 l~~~~g~ 130 (240)
.+++|+
T Consensus 169 -le~~~f 174 (359)
T PF04551_consen 169 -LEELGF 174 (359)
T ss_dssp -HHHCT-
T ss_pred -HHHCCC
Confidence 556666
No 121
>PRK05660 HemN family oxidoreductase; Provisional
Probab=37.88 E-value=1.2e+02 Score=27.30 Aligned_cols=47 Identities=13% Similarity=-0.021 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHH
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKA 119 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~ 119 (240)
+-+.+++.+.++.+++.|++.+.+.+-.|-...+.+.|.+.++.+.+
T Consensus 139 ~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~~ 185 (378)
T PRK05660 139 IHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQAIA 185 (378)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHh
Confidence 35788999999999999998788999988777788888887776544
No 122
>PF12195 End_beta_barrel: Beta barrel domain of bacteriophage endosialidase; InterPro: IPR024427 This entry represents the beta barrel domain of endosialidases which is nested in a beta propeller domain. This beta barrel domain is approximately 80 amino acids in length and represents one of the two sialic acid binding sites of the enzyme [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=37.02 E-value=25 Score=24.11 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=11.3
Q ss_pred CCCCCCEEEEcCCCccccc
Q 048797 203 ELQVGNWLVFSQIGACTAV 221 (240)
Q Consensus 203 ~l~~GD~l~~~~~GAY~~~ 221 (240)
.|.+||.+.|.|.|+-|.+
T Consensus 27 Gl~vGD~VnFsnsa~tGvS 45 (83)
T PF12195_consen 27 GLFVGDFVNFSNSAVTGVS 45 (83)
T ss_dssp ---TT-EEEEES-SSTT--
T ss_pred ceeecceEEEecccccccc
Confidence 6999999999999988765
No 123
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=36.70 E-value=1.5e+02 Score=24.87 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeCC---CC--CChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 77 AEIGALLEAALASQLGVVGISFHIGS---GA--TDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~gS---~~--~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+++.++.+.+++.|+++.+++...++ +. .+.+..+++++.+++.++. ++.+|.
T Consensus 47 ~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~-a~~lGa 104 (275)
T PRK09856 47 GGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDM-AKEMNA 104 (275)
T ss_pred hHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHH-HHHhCC
Confidence 45667777788899999887643222 11 2455666777777777777 777776
No 124
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=36.38 E-value=3.1e+02 Score=24.32 Aligned_cols=47 Identities=13% Similarity=0.072 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHH
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKA 119 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~ 119 (240)
+-+.+++.++++.+++.|+..+.+.+-.|--..+.+.|.+.++.+.+
T Consensus 130 ~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~~ 176 (350)
T PRK08446 130 IHSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKE 176 (350)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHHh
Confidence 45788999999999999987778888888666678888887776443
No 125
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=36.09 E-value=20 Score=30.59 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccchhHHHH
Q 048797 71 KCGANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKHWRRGRA 144 (240)
Q Consensus 71 kFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld~i~~~l 144 (240)
-||++.+ ++.|...++..+.-.|+. .|...+.+...+.++.+.+++++ +| +.+||.-++.+
T Consensus 187 i~GLtid--p~~L~~IR~~Rl~~lg~~---~s~Ya~~~~i~~El~~A~~l~~~----~~----~pvIdvT~ksI 247 (255)
T PF03618_consen 187 IFGLTID--PERLIEIRRERLKSLGLD---DSSYADLERIEEELEYAERLFRK----LG----CPVIDVTNKSI 247 (255)
T ss_pred EEEEECC--HHHHHHHHHHHHhccCCC---CCCCCCHHHHHHHHHHHHHHHHH----cC----CCEEECCCCcH
Confidence 4886554 222222333233333443 57778999999999999999988 44 46777433333
No 126
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=36.01 E-value=23 Score=23.73 Aligned_cols=13 Identities=23% Similarity=0.851 Sum_probs=9.3
Q ss_pred CCCCCCCEEEEcC
Q 048797 202 PELQVGNWLVFSQ 214 (240)
Q Consensus 202 p~l~~GD~l~~~~ 214 (240)
|++++|||+.++.
T Consensus 36 ~~v~~Gd~VLVHa 48 (68)
T PF01455_consen 36 PDVKVGDYVLVHA 48 (68)
T ss_dssp TSB-TT-EEEEET
T ss_pred CCCCCCCEEEEec
Confidence 7899999998873
No 127
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=35.99 E-value=1.7e+02 Score=24.32 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=37.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCC-CCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 71 KCGANLAEIGALLEAALASQLGVVGISFHIGS-GATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 71 kFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS-~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
.|..+.++..++.+..++.|+.+.++..+... -..+.....++++..+..++. +.++|.
T Consensus 39 ~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-a~~lg~ 98 (274)
T COG1082 39 LFPADYKELAELKELLADYGLEITSLAPFSNNLLSPDEEEREEALEELKRAIEL-AKELGA 98 (274)
T ss_pred cCCchhhhHHHHHHHHHHcCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHH-HHHcCC
Confidence 45555444566666777889998888888763 233444456666666666655 665664
No 128
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=35.89 E-value=82 Score=26.88 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=33.7
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc-CHHHHc--cccCCCCcEEEEE
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFDYA-SQAEIK--GKWHPRCDLLIRI 54 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~-s~~EL~--~~~~~~~~v~lRi 54 (240)
++..|||-++=++.||.=..+. ..|+++|+.+- -++.+. ++..++.++++--
T Consensus 42 ~iElGiPfSDP~aDGpvIq~a~-~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~ 96 (258)
T PRK13111 42 IIELGIPFSDPVADGPVIQAAS-LRALAAGVTLADVFELVREIREKDPTIPIVLMT 96 (258)
T ss_pred EEEECCCCCCCcccCHHHHHHH-HHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 4678999999999999766654 45899998754 444444 2233455655433
No 129
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=35.80 E-value=1.1e+02 Score=27.28 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHH
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKA 119 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~ 119 (240)
+.+.+++.+.++.+++.|+..+.+++-.|--..+.+.|.+.++.+.+
T Consensus 132 ~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~~~l~~~~~ 178 (377)
T PRK08599 132 THNEEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKESLAKALA 178 (377)
T ss_pred CCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHHHHHHHHHc
Confidence 56788999999999999987778888888766688888887776543
No 130
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=35.75 E-value=95 Score=27.97 Aligned_cols=42 Identities=17% Similarity=0.138 Sum_probs=30.0
Q ss_pred ccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCC-CcE
Q 048797 43 KWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQ-LGV 93 (240)
Q Consensus 43 ~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~-l~~ 93 (240)
...+...|++|+++ .+.. . .-|.+.+|..++.+..++.| +++
T Consensus 212 ~vg~~~~vg~Rls~-~d~~------~--~~g~~~~e~~~la~~L~~~G~~d~ 254 (363)
T COG1902 212 AVGADFPVGVRLSP-DDFF------D--GGGLTIEEAVELAKALEEAGLVDY 254 (363)
T ss_pred HhCCCceEEEEECc-cccC------C--CCCCCHHHHHHHHHHHHhcCCccE
Confidence 33455569999999 4321 1 22889999999999999888 443
No 131
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=35.26 E-value=28 Score=23.94 Aligned_cols=13 Identities=23% Similarity=0.606 Sum_probs=11.4
Q ss_pred CCCCCCCEEEEcC
Q 048797 202 PELQVGNWLVFSQ 214 (240)
Q Consensus 202 p~l~~GD~l~~~~ 214 (240)
|++++|||+.++-
T Consensus 34 ~~~~vGD~VLVH~ 46 (76)
T TIGR00074 34 GEVKVGDYVLVHV 46 (76)
T ss_pred CCCCCCCEEEEec
Confidence 8999999998874
No 132
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=35.06 E-value=27 Score=29.45 Aligned_cols=49 Identities=14% Similarity=0.050 Sum_probs=36.3
Q ss_pred CCcEEEcCCCCCHHHHHHHHHCCCCcc-----CHHHHc---cccCCCCcEEEEEeeCCC
Q 048797 9 GKSVSLTVALRNENGLAEALGSNFDYA-----SQAEIK---GKWHPRCDLLIRIKALDD 59 (240)
Q Consensus 9 ~~~Ii~~gp~K~~~~l~~A~~~gv~~~-----s~~EL~---~~~~~~~~v~lRi~~~~~ 59 (240)
.+-++|.|..-+++-|+++.. +..++ +++|+. .+....-+...|+.. .+
T Consensus 29 advviYAGSLV~~elL~~~~~-~aei~nSa~~tLeeIi~~m~~a~~~Gk~VvRLhS-GD 85 (254)
T COG2875 29 ADVVIYAGSLVPPELLEYCRP-DAEIVNSASLTLEEIIDLMVDAVREGKDVVRLHS-GD 85 (254)
T ss_pred CCEEEECCCcCCHHHHhhcCC-CCEEEecCcCCHHHHHHHHHHHHHcCCeEEEeec-CC
Confidence 356899999999999998854 44444 889988 333445578899998 54
No 133
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=35.04 E-value=28 Score=22.42 Aligned_cols=16 Identities=13% Similarity=0.279 Sum_probs=14.0
Q ss_pred CCCCCHHHHHHHHHHH
Q 048797 71 KCGANLAEIGALLEAA 86 (240)
Q Consensus 71 kFG~~~~~~~~~l~~a 86 (240)
+||++.+++.++++.+
T Consensus 29 ~~gvt~~~L~~AV~~v 44 (57)
T PF12244_consen 29 RFGVTEEQLREAVRAV 44 (57)
T ss_pred HHCcCHHHHHHHHHHH
Confidence 8999999999988754
No 134
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=34.38 E-value=57 Score=28.92 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=39.2
Q ss_pred HCCCCcc-CHHHHccccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCCCc-EEEEEEeeCCC
Q 048797 29 GSNFDYA-SQAEIKGKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLG-VVGISFHIGSG 103 (240)
Q Consensus 29 ~~gv~~~-s~~EL~~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~l~-~~Glh~H~gS~ 103 (240)
..++.++ |.+|+.+... ..+++=+.+ + =|.-.+++.+.+..|-+.|++ +.|+|.|+ |+
T Consensus 51 ~~~vpii~s~~~~~e~~~--e~liIgia~-~-------------gG~~~~~~~~~i~eAl~~G~nVvsglh~~l-s~ 110 (339)
T COG3367 51 KADVPIISSVEEALEGLA--EALIIGIAP-P-------------GGVLPESWREYIVEALEAGMNVVSGLHSFL-SD 110 (339)
T ss_pred cCCCcccccHHHHHhcCc--ceEEEEeec-C-------------CCcCcHHHHHHHHHHHHhCchhhhhhHHHh-hc
Confidence 4567776 7777763322 345566665 2 266677887888888888887 47999995 54
No 135
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.26 E-value=43 Score=25.64 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHhC-CCcEEEEEEee
Q 048797 71 KCGANLAEIGALLEAALAS-QLGVVGISFHI 100 (240)
Q Consensus 71 kFG~~~~~~~~~l~~a~~~-~l~~~Glh~H~ 100 (240)
|.|.+++++.++++ +. +-+++|++|..
T Consensus 99 ~~gv~~d~~kel~e---e~~~kkliGvCfm~ 126 (154)
T COG4090 99 KIGVTPDDAKELLE---ELGNKKLIGVCFMN 126 (154)
T ss_pred cCCCCHHHHHHHHH---hcCCCceEEeeHHH
Confidence 89999999999998 33 33699998764
No 136
>PRK10413 hydrogenase 2 accessory protein HypG; Provisional
Probab=34.15 E-value=27 Score=24.36 Aligned_cols=13 Identities=23% Similarity=0.700 Sum_probs=11.1
Q ss_pred CCCCCCCEEEEcC
Q 048797 202 PELQVGNWLVFSQ 214 (240)
Q Consensus 202 p~l~~GD~l~~~~ 214 (240)
|++++|||+.++.
T Consensus 41 ~~~~vGDyVLVHa 53 (82)
T PRK10413 41 PADLLGQWVLVHV 53 (82)
T ss_pred cccccCCEEEEec
Confidence 6789999998874
No 137
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=34.11 E-value=1.8e+02 Score=25.81 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=22.2
Q ss_pred CC-CCHHHHHHHHHHHHhC-C--CcEEEEEEeeCCC
Q 048797 72 CG-ANLAEIGALLEAALAS-Q--LGVVGISFHIGSG 103 (240)
Q Consensus 72 FG-~~~~~~~~~l~~a~~~-~--l~~~Glh~H~gS~ 103 (240)
+| +.++++.++++.+++. + + -+|+|+|-.-+
T Consensus 166 ~G~~~P~~v~~~v~~l~~~l~~~i-~ig~H~HnnlG 200 (333)
T TIGR03217 166 AGAMLPDDVRDRVRALKAVLKPET-QVGFHAHHNLS 200 (333)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCc-eEEEEeCCCCc
Confidence 45 5678888888877653 3 4 47999997554
No 138
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=34.00 E-value=1.3e+02 Score=26.73 Aligned_cols=47 Identities=6% Similarity=0.063 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHH
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKA 119 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~ 119 (240)
+.+.+++.++++.+++.|++-+.+++-.|--..+.+.|.+.++.+.+
T Consensus 131 ~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~e~~~~~l~~~~~ 177 (374)
T PRK05799 131 IHTFEEFLENYKLARKLGFNNINVDLMFGLPNQTLEDWKETLEKVVE 177 (374)
T ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHh
Confidence 35688999999999999987678888888655688888877776543
No 139
>COG2848 Uncharacterized conserved protein [Function unknown]
Probab=33.05 E-value=1.4e+02 Score=27.27 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEeeCCC-CCC--hHH--------HHHHHHHHHHHHHHHHHhCCC
Q 048797 74 ANLAEIGALLEAALASQLGVVGISFHIGSG-ATD--FGA--------FDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 74 ~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~-~~~--~~~--------~~~~i~~~~~~~~~l~~~~g~ 130 (240)
++.+|+.+.+++..+.+++++-+-+|+.-. +.+ .+. ......+..+..++|.+++|+
T Consensus 1 ~~~~~i~eti~mi~~~~ldIRaITigi~l~d~i~~~~~~~~~~i~~ki~~~~~~lve~~~~i~~e~Gv 68 (445)
T COG2848 1 MDSNEILETIEMIEEQNLDIRAITIGISLLDCISSDIEELAENIYEKITTKALKLVETAEELTAELGV 68 (445)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEEeeeehhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 357788999999999999998888887432 222 222 222233344555666667777
No 140
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=32.91 E-value=1.7e+02 Score=24.36 Aligned_cols=51 Identities=8% Similarity=0.021 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeCCC--CC-ChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 77 AEIGALLEAALASQLGVVGISFHIGSG--AT-DFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~gS~--~~-~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+.+.++++.|+++|.+.+.+ +.|.. .. ..+.|....+.+.++.+. +++.|+
T Consensus 85 ~~~~~~i~~a~~lga~~i~~--~~g~~~~~~~~~~~~~~~~~~l~~l~~~-a~~~Gv 138 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINC--LVGKTPAGFSSEQIHATLVENLRYAANM-LMKEDI 138 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEE--CCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 34677888899999886655 44432 12 234466666666777666 666676
No 141
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=32.77 E-value=2.2e+02 Score=23.83 Aligned_cols=15 Identities=13% Similarity=-0.009 Sum_probs=9.8
Q ss_pred HHHHHHHHHCCCCcc
Q 048797 21 ENGLAEALGSNFDYA 35 (240)
Q Consensus 21 ~~~l~~A~~~gv~~~ 35 (240)
.+.++.+.+.|+..+
T Consensus 13 ~~~~~~~~~~G~~~v 27 (273)
T smart00518 13 YKAFIEAVDIGARSF 27 (273)
T ss_pred hHHHHHHHHcCCCEE
Confidence 456777777776544
No 142
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=32.61 E-value=1.2e+02 Score=26.95 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=32.7
Q ss_pred cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEE
Q 048797 42 GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGI 96 (240)
Q Consensus 42 ~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~l~~~Gl 96 (240)
+..+++..|.+|+++ .+.. +=|.+.+++.++++.+.+.+++++-+
T Consensus 199 ~~vG~d~~v~iRi~~-~D~~---------~~g~~~~e~~~i~~~Le~~G~d~i~v 243 (353)
T cd02930 199 AAVGEDFIIIYRLSM-LDLV---------EGGSTWEEVVALAKALEAAGADILNT 243 (353)
T ss_pred HHcCCCceEEEEecc-cccC---------CCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 445677889999997 4311 23678899999998888888876533
No 143
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=32.57 E-value=2.6e+02 Score=27.12 Aligned_cols=49 Identities=8% Similarity=0.125 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHH-------HHHHHHHHHHHHHHhCCC
Q 048797 78 EIGALLEAALASQLGVVGISFHIGSGATDFGAFDG-------AISAAKAVFDAASARHGL 130 (240)
Q Consensus 78 ~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~-------~i~~~~~~~~~l~~~~g~ 130 (240)
.+..+++.||+.|+-+ -+-...|| ++.+...+ .++.|.+.++. .+++|+
T Consensus 142 ~~~~~v~~ak~~~~~i-RIGvN~GS--L~~~i~~~yg~tpe~mVeSAle~~~i-~e~~~f 197 (611)
T PRK02048 142 RFVPFLNICKENHTAI-RIGVNHGS--LSDRIMSRYGDTPEGMVESCMEFLRI-CVEEHF 197 (611)
T ss_pred HHHHHHHHHHHCCCCE-EEecCCcC--chHHHHHHhCCChHHHHHHHHHHHHH-HHHCCC
Confidence 4566888899998643 23333444 44333222 45666666666 666776
No 144
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=32.06 E-value=53 Score=27.60 Aligned_cols=92 Identities=11% Similarity=0.051 Sum_probs=49.7
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc-CHHHHccccCCCCcEE--EEEeeCCCCC--CcccCCCCCCCCCC-
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFDYA-SQAEIKGKWHPRCDLL--IRIKALDDCK--AVCPQAQDSKCGAN- 75 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~-s~~EL~~~~~~~~~v~--lRi~~~~~~~--~~~~~~~~skFG~~- 75 (240)
++.+|+|-++.+..||.-..+ -..|+++|+ + -..++.+. .+.++. ..+|+ -..+ .....-. +-|++
T Consensus 33 ~iElgip~sdp~adG~~i~~~-~~~a~~~g~--~~~v~~vr~~--~~~Pl~lM~y~n~-~~~~~~~~i~~~~--~~Gadg 104 (244)
T PRK13125 33 ILELGIPPKYPKYDGPVIRKS-HRKVKGLDI--WPLLEEVRKD--VSVPIILMTYLED-YVDSLDNFLNMAR--DVGADG 104 (244)
T ss_pred EEEECCCCCCCCCCCHHHHHH-HHHHHHcCc--HHHHHHHhcc--CCCCEEEEEecch-hhhCHHHHHHHHH--HcCCCE
Confidence 567899888888888876544 355778887 3 23333222 234443 33444 1110 0000000 11221
Q ss_pred ----------HHHHHHHHHHHHhCCCcEEEEEEeeCC
Q 048797 76 ----------LAEIGALLEAALASQLGVVGISFHIGS 102 (240)
Q Consensus 76 ----------~~~~~~~l~~a~~~~l~~~Glh~H~gS 102 (240)
.++..++++.++++|++ .|+-+|..|
T Consensus 105 vii~dlp~e~~~~~~~~~~~~~~~Gl~-~~~~v~p~T 140 (244)
T PRK13125 105 VLFPDLLIDYPDDLEKYVEIIKNKGLK-PVFFTSPKF 140 (244)
T ss_pred EEECCCCCCcHHHHHHHHHHHHHcCCC-EEEEECCCC
Confidence 25667777788888886 477777766
No 145
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=32.03 E-value=1.6e+02 Score=27.97 Aligned_cols=44 Identities=11% Similarity=0.017 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHH
Q 048797 72 CGANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISA 116 (240)
Q Consensus 72 FG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~ 116 (240)
=|.+.+++.++++.+++.|++ +++|+..|--..+.+.+.+.++.
T Consensus 237 Rght~~~v~~Ai~~lr~~G~~-v~~~LM~GLPgqt~e~~~~t~~~ 280 (522)
T TIGR01211 237 RGHTVRDVVEATRLLRDAGLK-VVYHIMPGLPGSSFERDLEMFRE 280 (522)
T ss_pred CCCCHHHHHHHHHHHHHcCCe-EEEEeecCCCCCCHHHHHHHHHH
Confidence 388899999999999999995 78999988655566666555443
No 146
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=31.76 E-value=2.4e+02 Score=23.96 Aligned_cols=65 Identities=22% Similarity=0.136 Sum_probs=40.6
Q ss_pred EcCCCCCHHH-HHHHHHCCCCcc---CHHHHc--cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHH
Q 048797 14 LTVALRNENG-LAEALGSNFDYA---SQAEIK--GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAAL 87 (240)
Q Consensus 14 ~~gp~K~~~~-l~~A~~~gv~~~---s~~EL~--~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~ 87 (240)
+--|||++++ .++|.+.||.+- |..|-+ -+..+..+ .+=|.| -- .++ +..+.++++.|.
T Consensus 190 LEEPCkt~aeSr~Fa~eTgIAIAWDEs~readF~~e~e~gv~-avVIKP-TL------~GS-------l~r~~eli~qAh 254 (321)
T COG1441 190 LEEPCKTRAESRAFARETGIAIAWDESLREADFAFEAEPGVR-AVVIKP-TL------TGS-------LQRVRELVQQAH 254 (321)
T ss_pred HhcccCChHHHHHHHHhcCeeEeecchhcccccccccCCCce-EEEecc-cc------hhh-------HHHHHHHHHHHH
Confidence 3569998875 567789999876 666655 12222222 122344 11 133 778899999999
Q ss_pred hCCCcE
Q 048797 88 ASQLGV 93 (240)
Q Consensus 88 ~~~l~~ 93 (240)
.+|+.-
T Consensus 255 ~lGl~A 260 (321)
T COG1441 255 ALGLTA 260 (321)
T ss_pred hcCcee
Confidence 888753
No 147
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=31.65 E-value=1.1e+02 Score=24.11 Aligned_cols=41 Identities=22% Similarity=0.358 Sum_probs=33.6
Q ss_pred CcEEEEEeeCCCCCCcccCCCCCCCCCCHH--HHHHHHHHHHhCCCcEEEEEEee
Q 048797 48 CDLLIRIKALDDCKAVCPQAQDSKCGANLA--EIGALLEAALASQLGVVGISFHI 100 (240)
Q Consensus 48 ~~v~lRi~~~~~~~~~~~~~~~skFG~~~~--~~~~~l~~a~~~~l~~~Glh~H~ 100 (240)
-+|+|=||. -||-|+++. ++..+++.-++.|+.+.|+-|..
T Consensus 25 GkVlLIVNt------------ASkCGfTpQYegLe~Ly~ky~~~Gf~VLgFPcNQ 67 (162)
T COG0386 25 GKVLLIVNT------------ASKCGFTPQYEGLEALYKKYKDKGFEVLGFPCNQ 67 (162)
T ss_pred CcEEEEEEc------------ccccCCcHhHHHHHHHHHHHhhCCcEEEeccccc
Confidence 468888887 238999984 78888999999999999998764
No 148
>PF02022 Integrase_Zn: Integrase Zinc binding domain The structure of the N-terminal zinc binding domain.; InterPro: IPR003308 Retroviral integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains: an N-terminal zinc binding domain, a central catalytic core and a C-terminal DNA-binding domain [, ]. Often found as part of the POL polyprotein.; GO: 0008270 zinc ion binding; PDB: 1E0E_A 3F9K_F 1E27_C 1K6Y_B 1WJD_A 1WJB_A 1WJF_A 1WJE_B 3HPG_B 3HPH_C ....
Probab=31.21 E-value=20 Score=21.34 Aligned_cols=16 Identities=13% Similarity=0.121 Sum_probs=12.3
Q ss_pred CCCCCHHHHHHHHHHH
Q 048797 71 KCGANLAEIGALLEAA 86 (240)
Q Consensus 71 kFG~~~~~~~~~l~~a 86 (240)
+||++...+.++++.+
T Consensus 18 ~f~ip~~vAk~IV~~C 33 (40)
T PF02022_consen 18 KFGIPRLVAKQIVNQC 33 (40)
T ss_dssp HHT--HHHHHHHHHHS
T ss_pred HHccCHHHHHHHHHHC
Confidence 8999999999998864
No 149
>PF11213 DUF3006: Protein of unknown function (DUF3006); InterPro: IPR021377 This family of proteins has no known function.
Probab=30.73 E-value=39 Score=22.66 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=15.1
Q ss_pred C-CCCCCCEEEEcCCCcccc
Q 048797 202 P-ELQVGNWLVFSQIGACTA 220 (240)
Q Consensus 202 p-~l~~GD~l~~~~~GAY~~ 220 (240)
| +.++||+|.+.+-|.|..
T Consensus 31 P~~~keGDvl~i~~~~~~~~ 50 (71)
T PF11213_consen 31 PEGAKEGDVLEIGEDGSIEI 50 (71)
T ss_pred CCCCCcccEEEECCCceEEE
Confidence 5 899999999966666654
No 150
>PRK06740 histidinol-phosphatase; Validated
Probab=30.64 E-value=64 Score=28.57 Aligned_cols=28 Identities=36% Similarity=0.394 Sum_probs=22.6
Q ss_pred CCCHH-HHHHHHHHHHhCCCcEEEEEEee
Q 048797 73 GANLA-EIGALLEAALASQLGVVGISFHI 100 (240)
Q Consensus 73 G~~~~-~~~~~l~~a~~~~l~~~Glh~H~ 100 (240)
|++-+ .+.+.++.|.+.|++.+|++=|.
T Consensus 56 ~~~~~~~~e~yv~~Ai~~G~~~ig~SdH~ 84 (331)
T PRK06740 56 GPYTTKWIDLYLEEALRKGIKEVGIVDHL 84 (331)
T ss_pred CCCccchHHHHHHHHHHCCCcEEEECCCC
Confidence 55544 36778889999999999999996
No 151
>PF04402 SIMPL: Protein of unknown function (DUF541); InterPro: IPR007497 Members of this family have so far been found in bacteria and mouse UniProtKB/Swiss-Prot or UniProtKB/TrEMBL entries. However possible family members have also been identified in translated rat (GenBank:AW144450) and human (GenBank:AI478629) ESTs. A mouse family member has been named SIMPL (signalling molecule that associates with mouse pelle-like kinase). SIMPL appears to facilitate and/or regulate complex formation between IRAK/mPLK (IL-1 receptor-associated kinase) and IKK (inhibitor of kappa-B kinase) containing complexes, and thus regulate NF-kappa-B activity []. Separate experiments demonstrate that a mouse family member (named LaXp180) binds the Listeria monocytogenes surface protein ActA, which is a virulence factor that induces actin polymerisation. It may also bind stathmin, a protein involved in signal transduction and in the regulation of microtubule dynamics []. In bacteria its function is unknown, but it is thought to be located in the periplasm or outer membrane.
Probab=30.33 E-value=1.8e+02 Score=23.18 Aligned_cols=58 Identities=24% Similarity=0.346 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHhCC---CcEEEEEEeeCCCC--CChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 71 KCGANLAEIGALLEAALASQ---LGVVGISFHIGSGA--TDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 71 kFG~~~~~~~~~l~~a~~~~---l~~~Glh~H~gS~~--~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+|- +.+.+.+++..+.+.| +++.+++|.+ |.. ...+.+.+|++.+++-.+.+++..|.
T Consensus 88 ~~~-d~~~l~~ll~~l~~~g~~~~~i~~i~~~~-s~~~~~~~e~~~~A~~~A~~kA~~lA~~~g~ 150 (210)
T PF04402_consen 88 TFK-DIKKLGKLLSALQSAGINNVSIGSIEFSL-SDEDEAKKEALKEAIKDAKEKAEALAKALGV 150 (210)
T ss_pred EEc-cHHHHHHHHHHHHhcCCccceecceEEEE-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444 6788888888887754 4588999888 432 23556788888888888777887887
No 152
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=30.30 E-value=1.7e+02 Score=26.24 Aligned_cols=47 Identities=9% Similarity=0.060 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHH
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKA 119 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~ 119 (240)
+.+.+++.+.++.+++.|+.-+.+++-.|--..+.+.|.+.++.+.+
T Consensus 135 ~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt~~~~~~~l~~~~~ 181 (370)
T PRK06294 135 THSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQSLSDFIVDLHQAIT 181 (370)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHc
Confidence 45788899999999999987678888888766788888887776543
No 153
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=30.29 E-value=1.1e+02 Score=25.77 Aligned_cols=52 Identities=17% Similarity=0.295 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCCCcEEEEEEeeCCCCCC-------hHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 79 IGALLEAALASQLGVVGISFHIGSGATD-------FGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 79 ~~~~l~~a~~~~l~~~Glh~H~gS~~~~-------~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
..++++.+.+.|+++.++|-..|.++.. +-.-.+.+-.++.+++++++++|+
T Consensus 71 ~~~i~~~l~~~Gi~ve~~h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl 129 (259)
T PF00120_consen 71 LEEIVDALEQAGIPVEQIHHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGL 129 (259)
T ss_dssp HHHHHHHHHHCT--EEEEEEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHhhccccccccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4557777888999999999999976543 223445556667888888888998
No 154
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=30.07 E-value=1.4e+02 Score=24.71 Aligned_cols=23 Identities=26% Similarity=0.169 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCCcEEEEEEeeC
Q 048797 79 IGALLEAALASQLGVVGISFHIG 101 (240)
Q Consensus 79 ~~~~l~~a~~~~l~~~Glh~H~g 101 (240)
+.++.+.+++.||++.++++..+
T Consensus 41 ~~~l~~~l~~~gl~v~~~~~~~~ 63 (254)
T TIGR03234 41 AEALKARLAAAGLEQVLFNLPAG 63 (254)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCC
Confidence 44455566788999999886654
No 155
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=29.31 E-value=1.9e+02 Score=25.83 Aligned_cols=46 Identities=4% Similarity=-0.008 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHH
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAK 118 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~ 118 (240)
+.+.+++.++++.+++.|+.-+++.+-.|--..+.+.|.+.++.+.
T Consensus 135 ~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~ 180 (353)
T PRK05904 135 THTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNFIL 180 (353)
T ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHHHHHH
Confidence 5678899999999999988667888888876677888877776543
No 156
>PRK10409 hydrogenase assembly chaperone; Provisional
Probab=29.15 E-value=38 Score=24.09 Aligned_cols=13 Identities=23% Similarity=0.672 Sum_probs=10.9
Q ss_pred CCCCCCCEEEEcC
Q 048797 202 PELQVGNWLVFSQ 214 (240)
Q Consensus 202 p~l~~GD~l~~~~ 214 (240)
|++++|||+.++-
T Consensus 40 ~~~~vGDyVLVHa 52 (90)
T PRK10409 40 GQPRVGQWVLVHV 52 (90)
T ss_pred CccCCCCEEEEec
Confidence 3799999998874
No 157
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=28.80 E-value=1.9e+02 Score=25.82 Aligned_cols=47 Identities=15% Similarity=0.110 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHH
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKA 119 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~ 119 (240)
+.+.+++.++++.+++.|+.-+.+.+-.|--..+.+.|.+.++.+.+
T Consensus 140 ~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~tl~~~~~ 186 (375)
T PRK05628 140 THTPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRASLDAALE 186 (375)
T ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHHHHHHHHh
Confidence 46778899999999999987668888888666788888887776543
No 158
>PF12643 MazG-like: MazG-like family
Probab=28.27 E-value=1e+02 Score=22.23 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=30.1
Q ss_pred eCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc-hhHHHHhh
Q 048797 100 IGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH-WRRGRADC 146 (240)
Q Consensus 100 ~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld-~i~~~l~~ 146 (240)
.|+. .+.+...+.++.+.-..-.|++++|+ ++.-|| .|.+.|++
T Consensus 28 ~~~~-~~~e~i~deLAdvii~~ylLa~rLGi--d~~~lD~~i~~KL~~ 72 (98)
T PF12643_consen 28 SGSE-VAQEAIKDELADVIIYCYLLADRLGI--DFRELDEIIKEKLKK 72 (98)
T ss_pred cCcc-hHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHh
Confidence 3443 44577777777776666667888999 888888 55555554
No 159
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=28.08 E-value=2.3e+02 Score=23.37 Aligned_cols=51 Identities=20% Similarity=0.089 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeCCCCCC---hHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 77 AEIGALLEAALASQLGVVGISFHIGSGATD---FGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~---~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+.+.+.++.|+++|...+ .++.|....+ .+.+...++.+.++.+. +++.|+
T Consensus 84 ~~~~~~i~~a~~lg~~~i--~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~-A~~~gi 137 (254)
T TIGR03234 84 EGVALAIAYARALGCPQV--NCLAGKRPAGVSPEEARATLVENLRYAADA-LDRIGL 137 (254)
T ss_pred HHHHHHHHHHHHhCCCEE--EECcCCCCCCCCHHHHHHHHHHHHHHHHHH-HHhcCC
Confidence 345567778888888654 4555543222 34566777777777766 777776
No 160
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=27.82 E-value=3.8e+02 Score=22.72 Aligned_cols=107 Identities=10% Similarity=0.122 Sum_probs=57.3
Q ss_pred EEcCCCCCHHHH----HHHHHCCCCcc--CHHHHc---cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHH
Q 048797 13 SLTVALRNENGL----AEALGSNFDYA--SQAEIK---GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALL 83 (240)
Q Consensus 13 i~~gp~K~~~~l----~~A~~~gv~~~--s~~EL~---~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l 83 (240)
++.||..+.+++ +.|++.|+..+ +..-+. .....+..+.+|++. ... ++ .+|.. +....-+
T Consensus 30 ~l~gp~~~~~d~~~~~~~a~~~~~~av~v~~~~~~~~~~~~~~~~~l~~~i~~-~~~-----~~---~~~~~-~~~~~~v 99 (267)
T PRK07226 30 VSHGPIDGLVDIRDTVNKVAEGGADAVLMHKGLARHGHRGYGRDVGLIVHLSA-STS-----LS---PDPND-KVLVGTV 99 (267)
T ss_pred cccCCCcCcCCHHHHHHHHHhcCCCEEEeCHhHHhhhccccCCCCcEEEEEcC-CCC-----CC---CCCCc-ceeeecH
Confidence 344565555554 55667776654 555554 233345678888873 110 00 11221 2122234
Q ss_pred HHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCcc
Q 048797 84 EAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAK 137 (240)
Q Consensus 84 ~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~l 137 (240)
+.+.+.|.+-+.+....|+.. +.+..+.+.++.+. +.++|+ .+..+
T Consensus 100 e~A~~~Gad~v~~~~~~g~~~-----~~~~~~~~~~v~~~-~~~~g~--pl~vi 145 (267)
T PRK07226 100 EEAIKLGADAVSVHVNVGSET-----EAEMLEDLGEVAEE-CEEWGM--PLLAM 145 (267)
T ss_pred HHHHHcCCCEEEEEEecCChh-----HHHHHHHHHHHHHH-HHHcCC--cEEEE
Confidence 456677888788888887632 33345555555555 666787 55554
No 161
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=27.61 E-value=3.1e+02 Score=23.96 Aligned_cols=30 Identities=17% Similarity=0.108 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCC
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSG 103 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~ 103 (240)
|.+.+++.++++.+++.|+. +..+|-+|--
T Consensus 151 g~t~~~~~~ai~~~~~~Gi~-v~~~~i~G~P 180 (313)
T TIGR01210 151 GSTFEDFIRAAELARKYGAG-VKAYLLFKPP 180 (313)
T ss_pred CCCHHHHHHHHHHHHHcCCc-EEEEEEecCC
Confidence 77899999999999999997 6678888853
No 162
>smart00642 Aamy Alpha-amylase domain.
Probab=27.39 E-value=76 Score=25.00 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=20.5
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCcEE
Q 048797 70 SKCGANLAEIGALLEAALASQLGVV 94 (240)
Q Consensus 70 skFG~~~~~~~~~l~~a~~~~l~~~ 94 (240)
++||- .+++.++++.+++.|++++
T Consensus 64 ~~~Gt-~~d~~~lv~~~h~~Gi~vi 87 (166)
T smart00642 64 PRFGT-MEDFKELVDAAHARGIKVI 87 (166)
T ss_pred cccCC-HHHHHHHHHHHHHCCCEEE
Confidence 38884 7899999999999998765
No 163
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=27.22 E-value=2.3e+02 Score=23.68 Aligned_cols=48 Identities=10% Similarity=-0.013 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHH
Q 048797 76 LAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDA 123 (240)
Q Consensus 76 ~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~ 123 (240)
.+++..+++.|++.|++-+=||+.....-..|......++...+.++.
T Consensus 45 ~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~l~~~l~~ 92 (223)
T PF06415_consen 45 IDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLEELEEKLAE 92 (223)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHHHHHHHHHh
Confidence 678999999999999987789999988777787666666665555544
No 164
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=27.05 E-value=1.7e+02 Score=24.66 Aligned_cols=52 Identities=10% Similarity=0.004 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeCC-CCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 78 EIGALLEAALASQLGVVGISFHIGS-GATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 78 ~~~~~l~~a~~~~l~~~Glh~H~gS-~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
.+...++.|+++|...+.++-.... ...+.+.+...++..+++.+. +++.|+
T Consensus 100 ~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-A~~~GV 152 (283)
T PRK13209 100 IMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVEL-ASRASV 152 (283)
T ss_pred HHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHH-HHHhCC
Confidence 3556778888999887765421100 112245566666766777776 777777
No 165
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=27.01 E-value=3.3e+02 Score=24.14 Aligned_cols=35 Identities=11% Similarity=-0.029 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHH
Q 048797 78 EIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAI 114 (240)
Q Consensus 78 ~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i 114 (240)
.+.+.++.+++.|+++.+.-... ...+++.+.+.+
T Consensus 115 ~~~~~i~~ak~~G~~v~~~l~~s--~~~~~e~l~~~a 149 (333)
T TIGR03217 115 VSEQHIGMARELGMDTVGFLMMS--HMTPPEKLAEQA 149 (333)
T ss_pred HHHHHHHHHHHcCCeEEEEEEcc--cCCCHHHHHHHH
Confidence 45566666777776655544333 223455444333
No 166
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=26.64 E-value=2e+02 Score=25.82 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH 138 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld 138 (240)
|+|..-+..++ ++.|.++.|+|++.+....+.+ .++.++++ ++.+|+ ++.++|
T Consensus 15 GVDSsvaa~LL---~~~G~~V~~v~~~~~~~~~~~~----d~~~a~~v----a~~LgI--p~~vvd 67 (360)
T PRK14665 15 GTDSSVAAMLL---LEAGYEVTGVTFRFYEFNGSTE----YLEDARAL----AERLGI--GHITYD 67 (360)
T ss_pred CHHHHHHHHHH---HHcCCeEEEEEEecCCCCCChH----HHHHHHHH----HHHhCC--CEEEEe
Confidence 66555444444 4568899999998764322222 23334444 444787 776666
No 167
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=26.46 E-value=2.4e+02 Score=26.50 Aligned_cols=47 Identities=9% Similarity=0.121 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHH
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKA 119 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~ 119 (240)
+.+.+++.++++.+++.|+.-+.+.+-.|--..+.+.|.+.++.+.+
T Consensus 301 ~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~ 347 (488)
T PRK08207 301 HHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIEK 347 (488)
T ss_pred CCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 46789999999999999997778888888766678888777775443
No 168
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=26.38 E-value=3.4e+02 Score=25.00 Aligned_cols=56 Identities=13% Similarity=-0.028 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEeeCC----CCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 74 ANLAEIGALLEAALASQLGVVGISFHIGS----GATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 74 ~~~~~~~~~l~~a~~~~l~~~Glh~H~gS----~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
++.+++.++.+.+++.++.+.-+-.|..- ...+++.+..+++...+-+++ +.++|.
T Consensus 173 ~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekSv~~~~~eL~r-A~~LGa 232 (413)
T PTZ00372 173 LSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKSYDAFLDDLQR-CEQLGI 232 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 56678888888899998875445555422 124678888889988888888 888876
No 169
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=26.28 E-value=61 Score=27.25 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=23.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCcEE--EEEEeeCC
Q 048797 69 DSKCGANLAEIGALLEAALASQLGVV--GISFHIGS 102 (240)
Q Consensus 69 ~skFG~~~~~~~~~l~~a~~~~l~~~--Glh~H~gS 102 (240)
+++||- .+|+.++++.+.+.|++|+ -+-=|.+.
T Consensus 45 d~~~Gt-~~d~~~Lv~~~h~~gi~VilD~V~NH~~~ 79 (316)
T PF00128_consen 45 DPRFGT-MEDFKELVDAAHKRGIKVILDVVPNHTSD 79 (316)
T ss_dssp STTTBH-HHHHHHHHHHHHHTTCEEEEEEETSEEET
T ss_pred ccccch-hhhhhhhhhccccccceEEEeeecccccc
Confidence 348984 7899999999999998754 33335544
No 170
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=26.16 E-value=2.1e+02 Score=26.40 Aligned_cols=47 Identities=11% Similarity=0.082 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHH
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKA 119 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~ 119 (240)
+.+.+++.++++.+++.|++-+++.+-.|--..+.+.|.+.++.+.+
T Consensus 184 ~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~ 230 (453)
T PRK13347 184 IQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIA 230 (453)
T ss_pred CCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHh
Confidence 35778899999999999987678888888666688888887776544
No 171
>COG0010 SpeB Arginase/agmatinase/formimionoglutamate hydrolase, arginase family [Amino acid transport and metabolism]
Probab=25.67 E-value=4.5e+02 Score=22.86 Aligned_cols=96 Identities=20% Similarity=0.145 Sum_probs=54.5
Q ss_pred CCcEEEcCCC-CCHHH-HHHHHHCCCCccCHHHHc------------cccCCCC-cEEEEEeeCCCCC-Cccc-CCCCCC
Q 048797 9 GKSVSLTVAL-RNENG-LAEALGSNFDYASQAEIK------------GKWHPRC-DLLIRIKALDDCK-AVCP-QAQDSK 71 (240)
Q Consensus 9 ~~~Ii~~gp~-K~~~~-l~~A~~~gv~~~s~~EL~------------~~~~~~~-~v~lRi~~~~~~~-~~~~-~~~~sk 71 (240)
|++++.-|-- -+.++ .+.+.+.||.+++..|++ .+..... .|.|=+.. +.-. +..+ .++.-.
T Consensus 169 p~~~v~iGiR~~~~~e~~~~~~~~gi~~~~~~~v~~~~~~~~~~~~i~~~~~~~~~vylSiDi-D~lDPa~aPgvgtp~~ 247 (305)
T COG0010 169 PENVVQIGIRSVDPEERAAVARERGIRVLTARDVDELGLVDVIEEAIDELKGDGDPVYLSIDL-DVLDPAFAPGVGTPEP 247 (305)
T ss_pred cceEEEEEeccCChHHHHHHHHhcCCEEEEHHHHHHhcCHHHHHHHHHHhhCCCCeEEEEEec-CCcCcccCCCCCCCCC
Confidence 4677777652 23333 556778999987443332 1222222 36676666 4211 1111 233458
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCC
Q 048797 72 CGANLAEIGALLEAALASQLGVVGISFHIGSGATD 106 (240)
Q Consensus 72 FG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~ 106 (240)
.|++..|+..++++..+. .+++|+-.=-=+-..|
T Consensus 248 gGlt~~e~~~~~~~l~~~-~~vvg~DvvEv~P~~D 281 (305)
T COG0010 248 GGLTFRELLDLLERLLKS-GKVVGFDVVEVNPALD 281 (305)
T ss_pred CCCCHHHHHHHHHHHhcc-CCEEEEEEEEECCCCC
Confidence 999999999988766554 4567766553343444
No 172
>cd08060 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family of unknown function includes neighbor of COX4 (Noc4p). This family includes Noc4p (neighbor of COX4; neighbor of Cytochrome c Oxidase 4; nucleolar complex associated 4 homolog) which belongs to the family of unknown function, UPF0172, with MPN/JAMM-like domains. Proteins in this family are homologs of the NOC4 gene which is conserved in eukaryotic members including human, dog, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.pombe, K.lactis, E.gossypii, M.grisea, N.crassa, A.thaliana, and rice. NOC4 highly expressed in the pancreas and moderately in liver, heart, lung, kidney, brain, skeletal muscle, and placenta. This nucleolar protein forms a complex with Nop14p that mediates maturation and nuclear export of 40S ribosomal subunits. This family of eukaryotic MPN-like domains lacks the key residues that coordinate a metal ion and therefore does not show catalytic isopeptidase activity.
Probab=25.66 E-value=2.1e+02 Score=23.06 Aligned_cols=41 Identities=12% Similarity=-0.040 Sum_probs=27.9
Q ss_pred CCCCCCHHH---HHHHHHHHHhCCCcEEEE-EEeeCCCCCChHHH
Q 048797 70 SKCGANLAE---IGALLEAALASQLGVVGI-SFHIGSGATDFGAF 110 (240)
Q Consensus 70 skFG~~~~~---~~~~l~~a~~~~l~~~Gl-h~H~gS~~~~~~~~ 110 (240)
+.|.+++.. ...+-+.+++.|+.++|+ |-|.......+..+
T Consensus 46 ~~~~l~P~~Eval~~ve~~~~~~gl~IvG~Yhsh~~~~d~~~~~~ 90 (182)
T cd08060 46 SCLALAPMLEVALALVDAYCKSSGLVIVGYYQANERLDDSSPSPV 90 (182)
T ss_pred CccccCHHHHHHHHHHHHHHHHCCCEEEEEEecCCcccCCCCcHH
Confidence 379999985 556666788899999997 55544433344433
No 173
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=25.59 E-value=2e+02 Score=21.69 Aligned_cols=41 Identities=20% Similarity=0.146 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCCh-HHHHHHHHHH
Q 048797 71 KCGANLAEIGALLEAALASQLGVVGISFHIGSGATDF-GAFDGAISAA 117 (240)
Q Consensus 71 kFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~-~~~~~~i~~~ 117 (240)
-+|.-++++.+.++.... .+.|+ +||+.++. +.|..|.+..
T Consensus 46 G~G~vP~~~~~Fle~~~n---~~~gV---~gSGn~n~g~~fc~A~d~i 87 (125)
T TIGR00333 46 GFGAVPKQTISFLNKKHN---LLRGV---AASGNKVWGDNFALAGDVI 87 (125)
T ss_pred CCCcCCHHHHHHHHhhhh---cEEEE---EEcCCCchHHHHHHHHHHH
Confidence 458778888888876554 56787 68999887 7787776653
No 174
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=25.35 E-value=1.9e+02 Score=25.40 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhCC--CcEEEEEEeeCCCCCChHHHHHHH
Q 048797 77 AEIGALLEAALASQ--LGVVGISFHIGSGATDFGAFDGAI 114 (240)
Q Consensus 77 ~~~~~~l~~a~~~~--l~~~Glh~H~gS~~~~~~~~~~~i 114 (240)
+...++++..++.| ++-+|+..|+..... ++.+.+.+
T Consensus 188 ~~~~~lv~~l~~~gvpIdgIG~Q~H~~~~~~-~~~i~~~l 226 (320)
T PF00331_consen 188 DAYLNLVKDLKARGVPIDGIGLQSHFDAGYP-PEQIWNAL 226 (320)
T ss_dssp HHHHHHHHHHHHTTHCS-EEEEEEEEETTSS-HHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccceechhhccCCCCC-HHHHHHHH
Confidence 34566666666665 678999999987654 34443333
No 175
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=25.27 E-value=59 Score=18.73 Aligned_cols=13 Identities=15% Similarity=0.082 Sum_probs=11.4
Q ss_pred CCCCCHHHHHHHH
Q 048797 71 KCGANLAEIGALL 83 (240)
Q Consensus 71 kFG~~~~~~~~~l 83 (240)
-||+++|++.+++
T Consensus 20 ~l~LtpEDAvEaL 32 (35)
T PF08383_consen 20 ALGLTPEDAVEAL 32 (35)
T ss_pred hcCCCHHHHHHHH
Confidence 6999999998876
No 176
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=25.19 E-value=1.5e+02 Score=19.42 Aligned_cols=55 Identities=13% Similarity=-0.028 Sum_probs=32.1
Q ss_pred cccCCCCCCcEEEcCCCC---CHHHHHHHHHCCCCcc--CHHHHc--cccCCCCcEEEEEee
Q 048797 2 LNALGVSGKSVSLTVALR---NENGLAEALGSNFDYA--SQAEIK--GKWHPRCDLLIRIKA 56 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K---~~~~l~~A~~~gv~~~--s~~EL~--~~~~~~~~v~lRi~~ 56 (240)
|++.|....+|.++-... -.+.++.+.+.|+.+. |.++|+ ......+.|+..+.+
T Consensus 11 aL~~~~~i~~l~~~~~~~~~~~~~i~~~~~~~~i~v~~v~~~~l~~ls~~~~hQGv~a~v~~ 72 (76)
T PF08032_consen 11 ALKSGPRIKKLFVTEEKADKRIKEILKLAKKKGIPVYEVSKKVLDKLSDTENHQGVVAVVKP 72 (76)
T ss_dssp HHHCTGGEEEEEEETT---CCTHHHHHHHHHCT-EEEEE-HHHHHHCTTTSS-TTEEEEEE-
T ss_pred HHcCCCCccEEEEEcCccchhHHHHHHHHHHcCCeEEEeCHHHHHHHcCCCCCCeEEEEEeC
Confidence 345555556666665511 2456788888999887 998888 333334567777765
No 177
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=25.08 E-value=2.9e+02 Score=24.74 Aligned_cols=45 Identities=13% Similarity=0.018 Sum_probs=27.2
Q ss_pred CCCCCHHHHH----HHHHHHHhCCCcEE-EEEEeeCCC---CCChHHHHHHHH
Q 048797 71 KCGANLAEIG----ALLEAALASQLGVV-GISFHIGSG---ATDFGAFDGAIS 115 (240)
Q Consensus 71 kFG~~~~~~~----~~l~~a~~~~l~~~-Glh~H~gS~---~~~~~~~~~~i~ 115 (240)
+++.+.+|+. ++++.+++.|+++. .++.-.|+. ..+++.+.+.++
T Consensus 152 n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~ 204 (347)
T PLN02746 152 NINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAK 204 (347)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHH
Confidence 7888888755 47778888898764 344444422 235554444433
No 178
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=24.83 E-value=1.6e+02 Score=21.74 Aligned_cols=80 Identities=11% Similarity=0.002 Sum_probs=43.2
Q ss_pred EEcCCCCCHHHHHHHHHCCCCcc-CHHHHccccCCCCcEEEEEeeCCCCCCcccCCCCCCCCC--CHHHHHHHHHHHHhC
Q 048797 13 SLTVALRNENGLAEALGSNFDYA-SQAEIKGKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGA--NLAEIGALLEAALAS 89 (240)
Q Consensus 13 i~~gp~K~~~~l~~A~~~gv~~~-s~~EL~~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~--~~~~~~~~l~~a~~~ 89 (240)
+|-|+..+.++++...+.||..+ |..+-.....+..--.+++.. .+.. .-.+ ..+++.+.++.+.+.
T Consensus 8 l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~ipi-~D~~---------~~~~~~~~~~~~~~i~~~~~~ 77 (138)
T smart00195 8 LYLGSYSSALNLALLKKLGITHVINVTNEVPNLNKKGFTYLGVPI-LDNT---------ETKISPYFPEAVEFIEDAEKK 77 (138)
T ss_pred eEECChhHcCCHHHHHHcCCCEEEEccCCCCCCCCCCCEEEEEEC-CCCC---------CCChHHHHHHHHHHHHHHhcC
Confidence 57777777778888888999877 543222111111123444443 2210 0011 123455566655555
Q ss_pred CCcEEEEEEeeCCC
Q 048797 90 QLGVVGISFHIGSG 103 (240)
Q Consensus 90 ~l~~~Glh~H~gS~ 103 (240)
+ .-+-+||+.|-+
T Consensus 78 ~-~~VlVHC~~G~~ 90 (138)
T smart00195 78 G-GKVLVHCQAGVS 90 (138)
T ss_pred C-CeEEEECCCCCc
Confidence 5 357799999875
No 179
>PF12983 DUF3867: Protein of unknown function (DUF3867); InterPro: IPR024218 This entry represents a family of functionally uncharacterised proteins that are found in bacteria. Proteins in this family are approximately 190 amino acids in length.
Probab=24.79 E-value=1e+02 Score=24.76 Aligned_cols=38 Identities=16% Similarity=0.317 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHH
Q 048797 71 KCGANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAIS 115 (240)
Q Consensus 71 kFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~ 115 (240)
|+|++++++.+.+ +.+|+++-++. ++..+.+.+++.+.
T Consensus 70 RYGfd~~~iE~q~---K~~Gid~~~~~----~~~~~~e~~rk~~s 107 (186)
T PF12983_consen 70 RYGFDPSEIEKQM---KSMGIDMSSLN----SSNNDYENIRKTLS 107 (186)
T ss_pred HhCCCHHHHHHHH---HHcCCCccccc----ccCCCHHHHHhhhh
Confidence 8999999877655 56788887776 45567777766644
No 180
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=24.56 E-value=3.4e+02 Score=23.15 Aligned_cols=21 Identities=33% Similarity=0.289 Sum_probs=15.2
Q ss_pred HHHHHHHHHCCCCcc--CHHHHc
Q 048797 21 ENGLAEALGSNFDYA--SQAEIK 41 (240)
Q Consensus 21 ~~~l~~A~~~gv~~~--s~~EL~ 41 (240)
.+-|..|.+.|...+ |.+|=+
T Consensus 21 ~erl~~AK~~GFDFvEmSvDEsD 43 (287)
T COG3623 21 LERLALAKELGFDFVEMSVDESD 43 (287)
T ss_pred HHHHHHHHHcCCCeEEEeccchH
Confidence 566778888887766 766655
No 181
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=24.53 E-value=31 Score=22.48 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCC
Q 048797 71 KCGANLAEIGALLEAALASQLGVVGISFHIGSG 103 (240)
Q Consensus 71 kFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~ 103 (240)
+.|++..++..++++||+.=++ .|.+|+-+-.
T Consensus 11 ~lGf~~~tA~~IIrqAK~~lV~-~G~~~Y~nkR 42 (59)
T PF11372_consen 11 ELGFSESTARDIIRQAKALLVQ-KGFSFYNNKR 42 (59)
T ss_pred HcCCCHHHHHHHHHHHHHHHHH-cCCCcccCCc
Confidence 5799999999999999987665 6888887665
No 182
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=24.40 E-value=99 Score=23.55 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=14.7
Q ss_pred HHHHHHhCCCcEEEEEEeeCCC
Q 048797 82 LLEAALASQLGVVGISFHIGSG 103 (240)
Q Consensus 82 ~l~~a~~~~l~~~Glh~H~gS~ 103 (240)
+++.+.+.+.+++|+++..++.
T Consensus 46 i~~~a~~~~~d~V~lS~~~~~~ 67 (137)
T PRK02261 46 FIDAAIETDADAILVSSLYGHG 67 (137)
T ss_pred HHHHHHHcCCCEEEEcCccccC
Confidence 4455566677888887777653
No 183
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=23.94 E-value=71 Score=27.23 Aligned_cols=34 Identities=15% Similarity=0.021 Sum_probs=21.6
Q ss_pred cccCCCCCCcEEE-cCCCCCHHHHHHHHHCCCCcc
Q 048797 2 LNALGVSGKSVSL-TVALRNENGLAEALGSNFDYA 35 (240)
Q Consensus 2 al~~G~~~~~Ii~-~gp~K~~~~l~~A~~~gv~~~ 35 (240)
|+++|+++++||. .||.-...+.....++|+..+
T Consensus 167 ~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~l 201 (256)
T TIGR00715 167 ALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAV 201 (256)
T ss_pred HHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEE
Confidence 5678888888774 456554445555556777655
No 184
>PF14083 PGDYG: PGDYG protein
Probab=23.92 E-value=42 Score=23.99 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=27.1
Q ss_pred eeEEEeccCcCCCcccccCCCCCCCCCEEEEcCCCccccccCCCC
Q 048797 182 YNSTVFGPTLDAYDKLFTGHPELQVGNWLVFSQIGACTAVYGSGF 226 (240)
Q Consensus 182 ~~~~i~G~~C~~~D~l~~~~p~l~~GD~l~~~~~GAY~~~~s~~F 226 (240)
++++|.-. ...|+|. -++||||+..--|-|+....-.|
T Consensus 60 ~~f~iarS--~~gdvl~-----g~agDw~mqyapGdygvv~~arF 97 (102)
T PF14083_consen 60 EPFSIARS--AGGDVLH-----GKAGDWLMQYAPGDYGVVQAARF 97 (102)
T ss_pred cchhhhhh--cCCCccc-----cCCcceEEEeCCCCcchhhHHhh
Confidence 34455432 2456665 58999999999999999876666
No 185
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=23.91 E-value=3.1e+02 Score=23.70 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=29.0
Q ss_pred CCCCCHHH----HHHHHHHHHhCCCcEEE-EEEeeCCC---CCChHHHHHHHHH
Q 048797 71 KCGANLAE----IGALLEAALASQLGVVG-ISFHIGSG---ATDFGAFDGAISA 116 (240)
Q Consensus 71 kFG~~~~~----~~~~l~~a~~~~l~~~G-lh~H~gS~---~~~~~~~~~~i~~ 116 (240)
++|.+.+| +.+.++.+++.|+.+.+ +.+-.++. ..+++.+.+.++.
T Consensus 110 n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~ 163 (287)
T PRK05692 110 NINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAER 163 (287)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHH
Confidence 88998877 55677788999988643 55444432 2355555554443
No 186
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=23.86 E-value=1e+02 Score=26.06 Aligned_cols=63 Identities=11% Similarity=-0.127 Sum_probs=34.5
Q ss_pred HHHHHHHHHCCCCcc----CHHHHc-----cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCCC
Q 048797 21 ENGLAEALGSNFDYA----SQAEIK-----GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQL 91 (240)
Q Consensus 21 ~~~l~~A~~~gv~~~----s~~EL~-----~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~l 91 (240)
.++++.|.+.|+..+ +.++.+ -+..++...-++++. .. -+-.+++.+.++.+.+.+.|.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~-~~-----------~~~~~~~~~~~~~~~~~~~G~ 155 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFL-MM-----------SHMASPEELAEQAKLMESYGA 155 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEE-Ee-----------ccCCCHHHHHHHHHHHHHcCC
Confidence 577888888887754 444433 111122223445554 21 123567777777777777665
Q ss_pred cEEE
Q 048797 92 GVVG 95 (240)
Q Consensus 92 ~~~G 95 (240)
+.+.
T Consensus 156 d~i~ 159 (263)
T cd07943 156 DCVY 159 (263)
T ss_pred CEEE
Confidence 5433
No 187
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=23.81 E-value=1.3e+02 Score=23.02 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCCcEEEEEEeeCCC
Q 048797 80 GALLEAALASQLGVVGISFHIGSG 103 (240)
Q Consensus 80 ~~~l~~a~~~~l~~~Glh~H~gS~ 103 (240)
.++++.+++.+.+++|++...++.
T Consensus 42 e~~v~aa~~~~adiVglS~l~~~~ 65 (134)
T TIGR01501 42 EEFIKAAIETKADAILVSSLYGHG 65 (134)
T ss_pred HHHHHHHHHcCCCEEEEecccccC
Confidence 446666777888899998887664
No 188
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=23.80 E-value=2.5e+02 Score=25.89 Aligned_cols=47 Identities=17% Similarity=0.080 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHH
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKA 119 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~ 119 (240)
+.+.+++.+.++.+++.|+.-+++++-.|--..+.+.|.+.++.+.+
T Consensus 183 ~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~~l~~~~~ 229 (453)
T PRK09249 183 IQPFEFTFALVEAARELGFTSINIDLIYGLPKQTPESFARTLEKVLE 229 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCHHHHHHHHHHHHh
Confidence 45778888999999999986678888888766788888887776544
No 189
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=23.80 E-value=3.9e+02 Score=24.68 Aligned_cols=47 Identities=15% Similarity=0.129 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHH
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKA 119 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~ 119 (240)
+.+.+++.+.++.+++.|..-+.+++-.|--..+.+.|.+.++.+.+
T Consensus 195 ~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgqT~e~~~~~l~~~~~ 241 (449)
T PRK09058 195 KDDREEVLARLEELVARDRAAVVCDLIFGLPGQTPEIWQQDLAIVRD 241 (449)
T ss_pred CCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCCCHHHHHHHHHHHHh
Confidence 45678888888888887744456777777655677888777766543
No 190
>COG2016 Predicted RNA-binding protein (contains PUA domain) [Translation, ribosomal structure and biogenesis]
Probab=23.73 E-value=64 Score=25.56 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=25.0
Q ss_pred cCcCCCcccccCC----CCCCCCCEEEEcCCC
Q 048797 189 PTLDAYDKLFTGH----PELQVGNWLVFSQIG 216 (240)
Q Consensus 189 ~~C~~~D~l~~~~----p~l~~GD~l~~~~~G 216 (240)
+.|...|+++... ++++.||.+++-..+
T Consensus 88 ~v~nGADvM~PGIv~~~~~ik~Gd~VvV~~e~ 119 (161)
T COG2016 88 FVLNGADVMAPGIVSADGEIKEGDIVVVVDEK 119 (161)
T ss_pred hhcCCCceeccceeecCCCccCCCEEEEEEcC
Confidence 6799999999987 799999999998776
No 191
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=23.32 E-value=1.8e+02 Score=22.88 Aligned_cols=64 Identities=16% Similarity=-0.002 Sum_probs=40.8
Q ss_pred cCCCCCHHHHHHHHHCCCCcc----CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHH
Q 048797 15 TVALRNENGLAEALGSNFDYA----SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLE 84 (240)
Q Consensus 15 ~gp~K~~~~l~~A~~~gv~~~----s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~ 84 (240)
+|+.-..+-++.+.+.|..++ +++.++ ++.+|+.+|.-+-++ .| +.++..++++
T Consensus 32 ~g~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g--------------~f--~~~~~~~i~~ 95 (172)
T PF03808_consen 32 TGSDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHG--------------YF--DEEEEEAIIN 95 (172)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCC--------------CC--ChhhHHHHHH
Confidence 666666777787878887776 666665 355677665544443 44 5666677777
Q ss_pred HHHhCCCcEE
Q 048797 85 AALASQLGVV 94 (240)
Q Consensus 85 ~a~~~~l~~~ 94 (240)
.+.+.+-+++
T Consensus 96 ~I~~~~pdiv 105 (172)
T PF03808_consen 96 RINASGPDIV 105 (172)
T ss_pred HHHHcCCCEE
Confidence 7666665543
No 192
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.16 E-value=5.2e+02 Score=22.78 Aligned_cols=71 Identities=21% Similarity=0.200 Sum_probs=41.9
Q ss_pred EEEEeeCCCCCCcccCCCCCCCCCCHH-----HHHHHHHHHHhCCCcEEEEEEeeCCCC----CChHHHHHHHHHHHHHH
Q 048797 51 LIRIKALDDCKAVCPQAQDSKCGANLA-----EIGALLEAALASQLGVVGISFHIGSGA----TDFGAFDGAISAAKAVF 121 (240)
Q Consensus 51 ~lRi~~~~~~~~~~~~~~~skFG~~~~-----~~~~~l~~a~~~~l~~~Glh~H~gS~~----~~~~~~~~~i~~~~~~~ 121 (240)
+.|++. +- .++.+...+|.+.. ++.++-+.+++.|++ |++|.+-.+ -+++....+++....-.
T Consensus 68 f~RisS-~l----~P~ash~~~~~~~~~~~~~~l~~iG~~a~~~~iR---LS~Hp~qfi~LnS~~~evv~~Si~~L~~ha 139 (312)
T TIGR00629 68 FYRFSS-SI----FPFASHPDVGYDLVTFAQKELREIGELAKTHQHR---LTFHPGQFTQFTSPRESVVKSAIRDLAYHD 139 (312)
T ss_pred EEecCc-cc----cCcCcCchhhhhHHHHHHHHHHHHHHHHHHcCeE---EEECCCccccCCCCCHHHHHHHHHHHHHHH
Confidence 568776 31 22332225565554 455555667778864 788986654 35777888877765444
Q ss_pred HHHHHhCCC
Q 048797 122 DAASARHGL 130 (240)
Q Consensus 122 ~~l~~~~g~ 130 (240)
+. ....|+
T Consensus 140 ~~-l~~mg~ 147 (312)
T TIGR00629 140 EM-LSAMKL 147 (312)
T ss_pred HH-HHHcCC
Confidence 33 444665
No 193
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=23.05 E-value=2.4e+02 Score=23.28 Aligned_cols=35 Identities=46% Similarity=0.518 Sum_probs=25.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCC
Q 048797 71 KCGANLAEIGALLEAALASQLGVVGISFHIGSGAT 105 (240)
Q Consensus 71 kFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~ 105 (240)
.=|++.+++.+.++.+.+.--..+|+-=|-||...
T Consensus 68 ~~~~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T 102 (213)
T PF04748_consen 68 LTGMSEEEIRKRLEAALARVPGAVGVNNHMGSRFT 102 (213)
T ss_dssp -TTS-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHH
T ss_pred cCCCCHHHHHHHHHHHHHHCCCcEEEecCCCcccc
Confidence 44788889999998877765578999999999753
No 194
>PRK06256 biotin synthase; Validated
Probab=22.52 E-value=3.3e+02 Score=23.79 Aligned_cols=41 Identities=12% Similarity=-0.079 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHH
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAIS 115 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~ 115 (240)
+-+.++..+.++.+++.|++ ++.++-+|-+ .+.+.+.+.+.
T Consensus 183 ~~t~~~~i~~i~~a~~~Gi~-v~~~~I~Glg-Et~ed~~~~~~ 223 (336)
T PRK06256 183 THTYEDRIDTCEMVKAAGIE-PCSGGIIGMG-ESLEDRVEHAF 223 (336)
T ss_pred CCCHHHHHHHHHHHHHcCCe-eccCeEEeCC-CCHHHHHHHHH
Confidence 34788999999999999986 5777888763 45555444433
No 195
>PRK13775 formimidoylglutamase; Provisional
Probab=22.52 E-value=5.3e+02 Score=22.64 Aligned_cols=89 Identities=15% Similarity=0.094 Sum_probs=50.3
Q ss_pred CCCCHHHHHHH-HHCCCCccCHHHHc--------c---c-cCCCCcEEEEEeeCCCCC-Cccc-CCCCCCCCCCHHHHHH
Q 048797 17 ALRNENGLAEA-LGSNFDYASQAEIK--------G---K-WHPRCDLLIRIKALDDCK-AVCP-QAQDSKCGANLAEIGA 81 (240)
Q Consensus 17 p~K~~~~l~~A-~~~gv~~~s~~EL~--------~---~-~~~~~~v~lRi~~~~~~~-~~~~-~~~~skFG~~~~~~~~ 81 (240)
..++.++++++ .+.|+.+++..|+. + + ....-.|.|=+.. +.-. +..+ .++....|++..|+.+
T Consensus 202 ~~~~~~~~~~~~~~~gi~~~~~~~i~~~g~~~v~~~~~~~~~~~~~vyvS~Di-D~lDps~aPGtgtP~pgGLt~~e~~~ 280 (328)
T PRK13775 202 HNNNLFLFDFVAKSKGIQFLTGQDIYQMGHQKVCRAIDRFLEGQERVYLTIDM-DCFSVGAAPGVSAIQSLGVDPNLAVL 280 (328)
T ss_pred CCCCHHHHHHHHHHcCCEEEEHHHhhhcCHHHHHHHHHHHHhcCCeEEEEEEc-CccCcccCCCCCCCCCCCCCHHHHHH
Confidence 34455677764 45787666444442 1 1 1112246666665 4222 2222 2445689999999999
Q ss_pred HHHHHHhCCCcEEEEEEeeCCCCCCh
Q 048797 82 LLEAALASQLGVVGISFHIGSGATDF 107 (240)
Q Consensus 82 ~l~~a~~~~l~~~Glh~H~gS~~~~~ 107 (240)
+++.+.+.+ +++|+.+--=+-.+|.
T Consensus 281 il~~l~~~~-~vvg~DivEv~P~~D~ 305 (328)
T PRK13775 281 VLQHIAASG-KLVGFDVVEVSPPHDI 305 (328)
T ss_pred HHHHHHhCC-CEEEEEEEEECCCCCC
Confidence 999875443 5677766533333443
No 196
>COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily [General function prediction only]
Probab=22.51 E-value=1.2e+02 Score=22.74 Aligned_cols=24 Identities=29% Similarity=0.151 Sum_probs=19.7
Q ss_pred HHHHHHhCCCcEEEE-EEeeCCCCC
Q 048797 82 LLEAALASQLGVVGI-SFHIGSGAT 105 (240)
Q Consensus 82 ~l~~a~~~~l~~~Gl-h~H~gS~~~ 105 (240)
....+...|..++|+ |-|.+....
T Consensus 60 ~~~~~~~~g~~vvg~yHSHP~~~~~ 84 (134)
T COG1310 60 FYLAAEDAGEVVVGWYHSHPGGPPY 84 (134)
T ss_pred HHHHHhhCCCEEEEEEcCCCCCCCC
Confidence 666777788999999 999987653
No 197
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=22.32 E-value=5.9e+02 Score=24.63 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHH-------HHHHHHHHHHHHHHHhCCC
Q 048797 77 AEIGALLEAALASQLGVVGISFHIGSGATDFGAFD-------GAISAAKAVFDAASARHGL 130 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~-------~~i~~~~~~~~~l~~~~g~ 130 (240)
+.+..+++.||+.++-+ -+-..-|| ++.+... ..++.|.+.++. .++.|+
T Consensus 145 e~~~~vV~~ake~~~~I-RIGvN~GS--L~~~i~~~yG~tpegmVeSAle~~~i-~e~~~f 201 (606)
T PRK00694 145 EKFSPLVEKCKRLGKAM-RIGVNHGS--LSERVMQRYGDTIEGMVYSALEYIEV-CEKLDY 201 (606)
T ss_pred HHHHHHHHHHHHCCCCE-EEecCCcC--chHHHHHHhCCCHHHHHHHHHHHHHH-HHHCCC
Confidence 35667888899998653 23333444 4443322 245666666666 666766
No 198
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=22.31 E-value=2.1e+02 Score=28.46 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=33.8
Q ss_pred CCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCC
Q 048797 45 HPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGISFHIGSG 103 (240)
Q Consensus 45 ~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~ 103 (240)
.++..|.+||++ .+. . .-|.+.++..++++.+.+.|+++ ||+|.|..
T Consensus 616 ~~~~~v~~ri~~-~~~-------~--~~g~~~~~~~~~~~~l~~~g~d~--i~vs~g~~ 662 (765)
T PRK08255 616 PAEKPMSVRISA-HDW-------V--EGGNTPDDAVEIARAFKAAGADL--IDVSSGQV 662 (765)
T ss_pred CCCCeeEEEEcc-ccc-------c--CCCCCHHHHHHHHHHHHhcCCcE--EEeCCCCC
Confidence 456689999998 421 1 33788999999888888888765 56776653
No 199
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=22.24 E-value=73 Score=27.48 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=23.9
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc
Q 048797 102 SGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH 138 (240)
Q Consensus 102 S~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld 138 (240)
|...+.+..++.++.+++++++ .| +.+||
T Consensus 217 s~Ya~~~~i~~El~~A~~l~~k----~~----~pvId 245 (269)
T PRK05339 217 SRYASLEQCREELAEAERLFRR----EG----IPVID 245 (269)
T ss_pred CcCCCHHHHHHHHHHHHHHHHH----cC----CCEEE
Confidence 6677999999999999999887 44 47788
No 200
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=22.17 E-value=5.6e+02 Score=22.75 Aligned_cols=82 Identities=15% Similarity=0.179 Sum_probs=45.0
Q ss_pred CHHHHccccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCH-HHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHH
Q 048797 36 SQAEIKGKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANL-AEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAI 114 (240)
Q Consensus 36 s~~EL~~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~-~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i 114 (240)
+.+||+....++.=..+.+=| .+. .++|..|++. +.+..+++..++.|+- .-+|--+-+...| .|.+..
T Consensus 83 ~peel~~a~~~g~i~a~KlYP-aGa------TTNS~~GV~~~~~~~pvle~Mq~~gmp-LlvHGEvt~~~vD--ifdrE~ 152 (344)
T COG0418 83 TPEELEEAKAKGVIRAVKLYP-AGA------TTNSDSGVTDIEKIYPVLEAMQKIGMP-LLVHGEVTDAEVD--IFDREA 152 (344)
T ss_pred CHHHHHHHHhcCcEEEEEecc-CCc------cccCcCCcCcHHHHHHHHHHHHHcCCe-EEEecccCCcccc--chhhHH
Confidence 667776222222234444444 211 2356889874 5677788888888974 3577666555444 444444
Q ss_pred HHHHHHHHHHHHh
Q 048797 115 SAAKAVFDAASAR 127 (240)
Q Consensus 115 ~~~~~~~~~l~~~ 127 (240)
..+..+++.+.++
T Consensus 153 ~Fi~~vl~pl~~~ 165 (344)
T COG0418 153 AFIESVLEPLRQR 165 (344)
T ss_pred HHHHHHHHHHHhh
Confidence 4344455553433
No 201
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=22.02 E-value=3.2e+02 Score=20.65 Aligned_cols=59 Identities=12% Similarity=0.054 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCC--cEEEEEEeeCCC---CCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 71 KCGANLAEIGALLEAALASQL--GVVGISFHIGSG---ATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 71 kFG~~~~~~~~~l~~a~~~~l--~~~Glh~H~gS~---~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+.|+.+..+..+++...+.|+ ...|.-..+..+ ..+...+..+.+....++.. ++.+|+
T Consensus 44 ~~~VNpnTv~raY~eLE~eG~i~t~rg~G~fV~~~~~~~~~~~~~~~~~~~l~~~I~~-~~~~G~ 107 (125)
T COG1725 44 DLGVNPNTVQRAYQELEREGIVETKRGKGTFVTEDAKEILDQLKRELAEEELEEFIEE-AKALGL 107 (125)
T ss_pred HhCCCHHHHHHHHHHHHHCCCEEEecCeeEEEcCCchhhHHHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 899999999999999998885 456777777655 33333455555556667777 777888
No 202
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=22.01 E-value=2.6e+02 Score=25.07 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=29.9
Q ss_pred cCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHH-HHHHHHHHHhCCCcEEEEE
Q 048797 44 WHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAE-IGALLEAALASQLGVVGIS 97 (240)
Q Consensus 44 ~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~-~~~~l~~a~~~~l~~~Glh 97 (240)
..+. .|++|+++ .+... +. +-|.+++| +.++++...+.+++++-++
T Consensus 223 vg~~-~igvRis~-~~~~~----~~--~~G~~~~e~~~~~~~~L~~~giD~i~vs 269 (362)
T PRK10605 223 WGAD-RIGIRISP-LGTFN----NV--DNGPNEEADALYLIEQLGKRGIAYLHMS 269 (362)
T ss_pred cCCC-eEEEEECC-ccccc----cC--CCCCCHHHHHHHHHHHHHHcCCCEEEec
Confidence 3444 49999998 42110 11 34788888 7888888887787655443
No 203
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=21.93 E-value=3.9e+02 Score=23.22 Aligned_cols=96 Identities=14% Similarity=0.227 Sum_probs=53.5
Q ss_pred CHHHHHHHHHCCCCc--c---CHHHHc----cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHH-HHhC
Q 048797 20 NENGLAEALGSNFDY--A---SQAEIK----GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEA-ALAS 89 (240)
Q Consensus 20 ~~~~l~~A~~~gv~~--~---s~~EL~----~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~-a~~~ 89 (240)
..+.|+.|.+.+..+ + |.+.++ +....+.+|+|-+.+ .. . +|....+.+...++. +++.
T Consensus 6 ~~~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~-~~--------~--~~~~~~~~~~~~~~~~a~~~ 74 (285)
T PRK07709 6 MKEMLNKALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSE-GA--------A--RHMTGFKTVVAMVKALIEEM 74 (285)
T ss_pred HHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCc-ch--------h--hhcCCHHHHHHHHHHHHHHc
Confidence 356778888877543 3 777776 222335679998876 21 1 554445555555553 3443
Q ss_pred CCc-EEEEEEeeCCCCCChH--------------------HHHHHHHHHHHHHHHHHHhCCC
Q 048797 90 QLG-VVGISFHIGSGATDFG--------------------AFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 90 ~l~-~~Glh~H~gS~~~~~~--------------------~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
... .+.||.--|. +.+ .|.+.++..+++.+. +...|+
T Consensus 75 ~~~VPV~lHLDHg~---~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~-Ah~~gv 132 (285)
T PRK07709 75 NITVPVAIHLDHGS---SFEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEY-AHARNV 132 (285)
T ss_pred CCCCcEEEECCCCC---CHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHH-HHHcCC
Confidence 421 3566665554 333 245555666666665 555554
No 204
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=21.81 E-value=1.5e+02 Score=22.49 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=18.3
Q ss_pred HHHHHHHHhCCCcEEEEEEeeCCC
Q 048797 80 GALLEAALASQLGVVGISFHIGSG 103 (240)
Q Consensus 80 ~~~l~~a~~~~l~~~Glh~H~gS~ 103 (240)
.++++.|++.+.+++|++...++.
T Consensus 40 e~~v~aa~~~~adiVglS~L~t~~ 63 (128)
T cd02072 40 EEFIDAAIETDADAILVSSLYGHG 63 (128)
T ss_pred HHHHHHHHHcCCCEEEEeccccCC
Confidence 446667778888999998887774
No 205
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=21.81 E-value=1.8e+02 Score=19.83 Aligned_cols=30 Identities=20% Similarity=0.109 Sum_probs=22.7
Q ss_pred CCCCHHHHHH-HHHHHHhCCCc-EEEEEEeeC
Q 048797 72 CGANLAEIGA-LLEAALASQLG-VVGISFHIG 101 (240)
Q Consensus 72 FG~~~~~~~~-~l~~a~~~~l~-~~Glh~H~g 101 (240)
.|=+++++.+ +.++|+++|-+ ++|+.|...
T Consensus 23 ~~~d~d~Al~eM~e~A~~lGAnAVVGvr~d~s 54 (74)
T TIGR03884 23 ESDNVDEIVENLREKVKAKGGMGLIAFRITCA 54 (74)
T ss_pred ecCCHHHHHHHHHHHHHHcCCCEEEEEEEEcC
Confidence 3448888755 66789999864 899999875
No 206
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=21.79 E-value=4.7e+02 Score=23.05 Aligned_cols=73 Identities=18% Similarity=0.185 Sum_probs=43.7
Q ss_pred CCHHHHHHH--------HHCCCCcc------CHHHHc----------cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCC
Q 048797 19 RNENGLAEA--------LGSNFDYA------SQAEIK----------GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGA 74 (240)
Q Consensus 19 K~~~~l~~A--------~~~gv~~~------s~~EL~----------~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~ 74 (240)
-+-++|+.| ++-|+-++ +..|++ .+.+.+.+|.+-... .+++ ...-|-
T Consensus 136 v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti-~~sG-------~tl~Gq 207 (311)
T COG0646 136 VTFDELVEAYREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTI-TDSG-------RTLSGQ 207 (311)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEEEEE-ecCc-------eecCCC
Confidence 455666655 45677755 555665 122334666666665 3322 124566
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEEeeCC
Q 048797 75 NLAEIGALLEAALASQLGVVGISFHIGS 102 (240)
Q Consensus 75 ~~~~~~~~l~~a~~~~l~~~Glh~H~gS 102 (240)
+++.+...+ +..+...+|+-|+.|.
T Consensus 208 ~~~a~~~~l---~~~~~~~vGlNCa~Gp 232 (311)
T COG0646 208 TIEAFLNSL---EHLGPDAVGLNCALGP 232 (311)
T ss_pred cHHHHHHHh---hccCCcEEeeccccCH
Confidence 666655544 4567889999999876
No 207
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=21.75 E-value=2.9e+02 Score=25.48 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHH
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKA 119 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~ 119 (240)
+.+.+++.+.++.+++.|++-+.+++..|--..+.+.|.+.++.+.+
T Consensus 183 ~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~ 229 (455)
T TIGR00538 183 IQPEEMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTLEKVAE 229 (455)
T ss_pred CCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCCHHHHHHHHHHHHh
Confidence 45678888999999999987677888888666788888888776554
No 208
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=21.64 E-value=29 Score=25.84 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=26.3
Q ss_pred EEcCCCCCHHHHHHHHHCCCCcc------CHHHHc--cccCCCCcEE
Q 048797 13 SLTVALRNENGLAEALGSNFDYA------SQAEIK--GKWHPRCDLL 51 (240)
Q Consensus 13 i~~gp~K~~~~l~~A~~~gv~~~------s~~EL~--~~~~~~~~v~ 51 (240)
-|+.|.-..+.+++++++|+.++ +.+|++ ++......++
T Consensus 73 DfT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~~~vl 119 (124)
T PF01113_consen 73 DFTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKKIPVL 119 (124)
T ss_dssp EES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTTSEEE
T ss_pred EcCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhccCCEE
Confidence 48888888889999999998876 566666 4444444444
No 209
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=21.48 E-value=4.6e+02 Score=21.46 Aligned_cols=95 Identities=17% Similarity=0.214 Sum_probs=51.1
Q ss_pred HHHHHHHHHCCCCcc--CHHHHc---cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q 048797 21 ENGLAEALGSNFDYA--SQAEIK---GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVG 95 (240)
Q Consensus 21 ~~~l~~A~~~gv~~~--s~~EL~---~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~l~~~G 95 (240)
.+-++.+.+.|+..+ +...+. ..+.....+++|++. ... +.. . .-+.+.....++.+.+.|.+.+.
T Consensus 24 ~~~~~~~~~~g~~av~v~~~~~~~~~~~~~~~~~~i~~~~~-~~~---i~~----p-~~~~~~~~~~v~~a~~~Ga~~v~ 94 (235)
T cd00958 24 EETVKLAAEGGADAVALTKGIARAYGREYAGDIPLIVKLNG-STS---LSP----K-DDNDKVLVASVEDAVRLGADAVG 94 (235)
T ss_pred HHHHHHHHhcCCCEEEeChHHHHhcccccCCCCcEEEEECC-CCC---CCC----C-CCCchhhhcCHHHHHHCCCCEEE
Confidence 334566677787765 655555 233234568888875 211 100 0 11222223334556677887777
Q ss_pred EEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 96 ISFHIGSGATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 96 lh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+....++. + +.+.++.+.++.+. ++++|+
T Consensus 95 ~~~~~~~~--~---~~~~~~~i~~v~~~-~~~~g~ 123 (235)
T cd00958 95 VTVYVGSE--E---EREMLEELARVAAE-AHKYGL 123 (235)
T ss_pred EEEecCCc--h---HHHHHHHHHHHHHH-HHHcCC
Confidence 77777753 2 34445555555555 566777
No 210
>PLN02284 glutamine synthetase
Probab=21.32 E-value=2.8e+02 Score=24.77 Aligned_cols=49 Identities=16% Similarity=0.235 Sum_probs=33.3
Q ss_pred HHHHHHhCCCcEEEEEEeeCCCCCChH-HHHHH------HHHHHHHHHHHHHhCCC
Q 048797 82 LLEAALASQLGVVGISFHIGSGATDFG-AFDGA------ISAAKAVFDAASARHGL 130 (240)
Q Consensus 82 ~l~~a~~~~l~~~Glh~H~gS~~~~~~-~~~~~------i~~~~~~~~~l~~~~g~ 130 (240)
+.+.+.+.|+.+.+.|-..|.++...+ .+..+ +-.++.+++.+++++|+
T Consensus 175 l~~~l~~~Gi~ve~~h~E~apGQ~Ei~l~~~d~l~aAD~~~~~K~vvk~vA~~~Gl 230 (354)
T PLN02284 175 HYKACLYAGINISGINGEVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGV 230 (354)
T ss_pred HHHHHHHCCCCeEEEEcCcCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 445567889999999999987765432 12222 33346777777888887
No 211
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=21.31 E-value=3.5e+02 Score=23.17 Aligned_cols=47 Identities=19% Similarity=0.214 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEEee-----CCCCCChHHHHHHHHHHHHH
Q 048797 72 CGANLAEIGALLEAALASQLGVVGISFHI-----GSGATDFGAFDGAISAAKAV 120 (240)
Q Consensus 72 FG~~~~~~~~~l~~a~~~~l~~~Glh~H~-----gS~~~~~~~~~~~i~~~~~~ 120 (240)
-=++++|+.+-...+.+.|-.+ +|+|. |....|++.|.+.++..++-
T Consensus 21 lP~tpeEia~~A~~c~~AGAa~--vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~ 72 (272)
T PF05853_consen 21 LPITPEEIAADAVACYEAGAAI--VHIHARDDEDGRPSLDPELYAEVVEAIRAA 72 (272)
T ss_dssp S--SHHHHHHHHHHHHHHTESE--EEE-EE-TTTS-EE--HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCcE--EEeecCCCCCCCcCCCHHHHHHHHHHHHHH
Confidence 4466788877777788888765 66665 44557888898888876553
No 212
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=21.28 E-value=4.9e+02 Score=21.79 Aligned_cols=43 Identities=21% Similarity=0.020 Sum_probs=22.7
Q ss_pred CCCCCHHHHH----HHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHH
Q 048797 71 KCGANLAEIG----ALLEAALASQLGVVGISFHIGSGATDFGAFDGAIS 115 (240)
Q Consensus 71 kFG~~~~~~~----~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~ 115 (240)
++|.+.+++. +.++.+++.|+.+. +.+--.+ ..+++.+.+.++
T Consensus 100 ~~~~~~~~~~~~~~~~i~~a~~~G~~v~-~~~~~~~-~~~~~~~~~~~~ 146 (259)
T cd07939 100 KLGKDRAWVLDQLRRLVGRAKDRGLFVS-VGAEDAS-RADPDFLIEFAE 146 (259)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHCCCeEE-EeeccCC-CCCHHHHHHHHH
Confidence 6777776543 45566777776543 4433333 234554444444
No 213
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=21.18 E-value=3.2e+02 Score=25.23 Aligned_cols=45 Identities=16% Similarity=0.111 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHH
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAK 118 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~ 118 (240)
|.+.+++.++++.+++.|+. +...|-+|--..+.+.+.+.++.+.
T Consensus 319 ~~~~~~~~~~i~~~~~~Gi~-v~~~~IiGlPget~e~~~~ti~~~~ 363 (472)
T TIGR03471 319 GLTVEIARRFTRDCHKLGIK-VHGTFILGLPGETRETIRKTIDFAK 363 (472)
T ss_pred CCCHHHHHHHHHHHHHCCCe-EEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 67888999999999999987 4456777765567777777666543
No 214
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=21.13 E-value=5.9e+02 Score=22.79 Aligned_cols=45 Identities=16% Similarity=0.082 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHH
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAK 118 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~ 118 (240)
+.+.+++.+.++.+++.+. -+.+++-.|--..+.+.|.+.++.+.
T Consensus 136 ~~~~~~~~~ai~~~~~~~~-~v~~dli~GlPgqt~~~~~~~l~~~~ 180 (380)
T PRK09057 136 LHSVAEALAAIDLAREIFP-RVSFDLIYARPGQTLAAWRAELKEAL 180 (380)
T ss_pred CCCHHHHHHHHHHHHHhCc-cEEEEeecCCCCCCHHHHHHHHHHHH
Confidence 6678888888888887754 46788888865567778887766554
No 215
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=21.06 E-value=3.1e+02 Score=25.64 Aligned_cols=46 Identities=9% Similarity=0.032 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHH
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKA 119 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~ 119 (240)
|.+.++..++++.+++.|+.+ ..+|-+|--..+.+.+.+.++.+.+
T Consensus 319 ~~t~~~~~~ai~~l~~~Gi~~-~~~~I~G~P~et~e~~~~t~~~~~~ 364 (497)
T TIGR02026 319 GTTTSTNKEAIRLLRQHNILS-EAQFITGFENETDETFEETYRQLLD 364 (497)
T ss_pred CCCHHHHHHHHHHHHHCCCcE-EEEEEEECCCCCHHHHHHHHHHHHH
Confidence 678889999999999999975 5788888766678888777775443
No 216
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.03 E-value=3.8e+02 Score=22.68 Aligned_cols=13 Identities=8% Similarity=-0.031 Sum_probs=7.7
Q ss_pred HHHHHHHHHCCCC
Q 048797 21 ENGLAEALGSNFD 33 (240)
Q Consensus 21 ~~~l~~A~~~gv~ 33 (240)
.+.++.|.+.|..
T Consensus 14 ~~a~~~~~~~G~~ 26 (274)
T TIGR00587 14 QAAYNRAAEIGAT 26 (274)
T ss_pred HHHHHHHHHhCCC
Confidence 4456666666654
No 217
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=21.01 E-value=1e+02 Score=24.59 Aligned_cols=6 Identities=0% Similarity=0.296 Sum_probs=3.5
Q ss_pred CHHHHc
Q 048797 36 SQAEIK 41 (240)
Q Consensus 36 s~~EL~ 41 (240)
|..+++
T Consensus 157 ~~~Di~ 162 (205)
T TIGR01454 157 AVTDLA 162 (205)
T ss_pred CHHHHH
Confidence 655555
No 218
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=20.68 E-value=4.4e+02 Score=22.99 Aligned_cols=97 Identities=12% Similarity=0.188 Sum_probs=54.6
Q ss_pred HHHHHHHHHCCCCc--c---CHHHHc----cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHH-HHHHHhCC
Q 048797 21 ENGLAEALGSNFDY--A---SQAEIK----GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGAL-LEAALASQ 90 (240)
Q Consensus 21 ~~~l~~A~~~gv~~--~---s~~EL~----~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~-l~~a~~~~ 90 (240)
++.|+.|.++|..+ + |.+-+. +....+.+|+|.+++ ... ||.--.+.+.+. ...+++++
T Consensus 7 ~~ll~~Ake~~yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~-g~~----------~y~gg~~~~~~~v~~~a~~~~ 75 (286)
T COG0191 7 KELLDKAKENGYAVPAFNINNLETLQAILEAAEEEKSPVIIQFSE-GAA----------KYAGGADSLAHMVKALAEKYG 75 (286)
T ss_pred HHHHHHHHHcCCceeeeeecCHHHHHHHHHHHHHhCCCEEEEecc-cHH----------HHhchHHHHHHHHHHHHHHCC
Confidence 67889999887553 2 777776 222345789998887 311 222212333333 33566667
Q ss_pred CcEEEEEEeeCCCCC-----------------ChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 91 LGVVGISFHIGSGAT-----------------DFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 91 l~~~Glh~H~gS~~~-----------------~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+. +-||.--|.... +...|.+.++.++++++. +...|+
T Consensus 76 vP-V~lHlDHg~~~~~~~~ai~~GFsSvMiDgS~~~~eENi~~tkevv~~-ah~~gv 130 (286)
T COG0191 76 VP-VALHLDHGASFEDCKQAIRAGFSSVMIDGSHLPFEENIAITKEVVEF-AHAYGV 130 (286)
T ss_pred CC-EEEECCCCCCHHHHHHHHhcCCceEEecCCcCCHHHHHHHHHHHHHH-HHHcCC
Confidence 54 346665553110 112366666777777777 666665
No 219
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=20.63 E-value=4.6e+02 Score=23.54 Aligned_cols=52 Identities=15% Similarity=0.246 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeCCCCCC-hHHH-----HHHHHHHHHHHHHHHHhCCC
Q 048797 77 AEIGALLEAALASQLGVVGISFHIGSGATD-FGAF-----DGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~-~~~~-----~~~i~~~~~~~~~l~~~~g~ 130 (240)
+.+.++++.|++.|.-+ -+-...||-..+ .+.| ...++.+.+-.+. .+++|+
T Consensus 110 ~~v~~vVe~Ak~~g~pi-RIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~-~e~l~f 167 (361)
T COG0821 110 DRVREVVEAAKDKGIPI-RIGVNAGSLEKRLLEKYGGPTPEALVESALEHAEL-LEELGF 167 (361)
T ss_pred HHHHHHHHHHHHcCCCE-EEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHH-HHHCCC
Confidence 37888999999998653 344445663222 1234 3345555555555 666777
No 220
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=20.43 E-value=46 Score=27.11 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=11.3
Q ss_pred EEcCCCCCHHHH-HHHHHCCCCcc
Q 048797 13 SLTVALRNENGL-AEALGSNFDYA 35 (240)
Q Consensus 13 i~~gp~K~~~~l-~~A~~~gv~~~ 35 (240)
+|+|-.|++++| +.|-+.||.+.
T Consensus 38 LYsG~IktdeEL~kkA~Elgv~i~ 61 (194)
T PF09894_consen 38 LYSGKIKTDEELLKKAEELGVKIK 61 (194)
T ss_pred HhCCccCCHHHHHHHHHHcCCEEE
Confidence 445555555554 33445555543
No 221
>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis]
Probab=20.42 E-value=1.3e+02 Score=25.37 Aligned_cols=38 Identities=16% Similarity=0.399 Sum_probs=29.5
Q ss_pred EEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc
Q 048797 96 ISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH 138 (240)
Q Consensus 96 lh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld 138 (240)
|.+|.|++-.+...|... +..++.++++..|+ .+++||
T Consensus 3 l~i~~g~gg~e~~dw~~~---l~rmy~r~a~~~g~--~~e~l~ 40 (239)
T COG1186 3 LTIHAGAGGTEAQDWASM---LLRMYTRWAERKGF--KVEVLD 40 (239)
T ss_pred EEEeCCCCchHHHHHHHH---HHHHHHHHHHHcCC--eEEEEe
Confidence 678899988777777554 45566677888999 999998
No 222
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=20.34 E-value=3.6e+02 Score=21.70 Aligned_cols=46 Identities=9% Similarity=0.034 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCCCCCCccc----------hhHHHHhhhcCCCC---eeeeCceEEEEe
Q 048797 118 KAVFDAASARHGLTDQMRAKH----------WRRGRADCHFGAGP---FPRDSAFTLATR 164 (240)
Q Consensus 118 ~~~~~~l~~~~g~~~~~~~ld----------~i~~~l~~~~~~~p---~lva~a~~l~t~ 164 (240)
...+++|.++.|++ ..++++ .+...+++++-..+ |+|+..|.+..+
T Consensus 53 ~~eid~l~~e~Gyk-~~Dvvsv~~~~pk~del~akF~~EH~H~d~EvRy~vaG~GiF~v~ 111 (181)
T COG1791 53 ETEIDRLIRERGYK-NRDVVSVSPSNPKLDELRAKFLQEHLHTDDEVRYFVAGEGIFDVH 111 (181)
T ss_pred HHHHHHHHHhhCCc-eeeEEEeCCCCccHHHHHHHHHHHhccCCceEEEEEecceEEEEE
Confidence 34556667778883 556666 33344455554433 999999988776
No 223
>PF00842 Ala_racemase_C: Alanine racemase, C-terminal domain; InterPro: IPR011079 Alanine racemase (5.1.1.1 from EC) plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins contains this domain are found in both prokaryotic and eukaryotic proteins [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus (Geobacillus stearothermophilus) was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strand. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel.; GO: 0008784 alanine racemase activity, 0006522 alanine metabolic process; PDB: 3HUR_A 4A3Q_B 3S46_A 1RCQ_A 3CO8_A 1VFT_B 1VFH_A 1VFS_B 2DY3_B 4ECL_C ....
Probab=20.34 E-value=1.3e+02 Score=22.65 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=18.6
Q ss_pred eeeEEEeccCcCCCcccc-cCC-CCCCCCCEEEEcC
Q 048797 181 IYNSTVFGPTLDAYDKLF-TGH-PELQVGNWLVFSQ 214 (240)
Q Consensus 181 ~~~~~i~G~~C~~~D~l~-~~~-p~l~~GD~l~~~~ 214 (240)
...+.|.|..|+..=++- .+. |++++||.+.+..
T Consensus 59 G~~~pivG~v~MD~~~vdvt~~~~~v~~GD~V~l~G 94 (129)
T PF00842_consen 59 GKRCPIVGRVCMDMTMVDVTDIEPDVKVGDEVTLFG 94 (129)
T ss_dssp TEEEEEES---SS-EEEEESTSTST--TT-EEEEEE
T ss_pred CEEEEEEEEEEeeEEEEEcCCCCCCCCCCCEEEEEC
Confidence 467889999987653332 234 6999999998865
No 224
>PRK01706 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=20.01 E-value=1.9e+02 Score=21.76 Aligned_cols=27 Identities=22% Similarity=-0.020 Sum_probs=18.7
Q ss_pred HHHHHHHHH-HHHhCCCcEEEEEEeeCC
Q 048797 76 LAEIGALLE-AALASQLGVVGISFHIGS 102 (240)
Q Consensus 76 ~~~~~~~l~-~a~~~~l~~~Glh~H~gS 102 (240)
.+.+.+++. .+++.|+.+++.++|.=+
T Consensus 25 ~~~l~~~l~~aa~~~g~tiv~~~~h~F~ 52 (123)
T PRK01706 25 MYFLEHHLVEAADLSGAHVLNVSTKEFD 52 (123)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEEEEcC
Confidence 344555554 456679999999999743
Done!