Query 048797
Match_columns 240
No_of_seqs 165 out of 1141
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 23:28:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048797.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048797hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 7odc_A Protein (ornithine deca 100.0 2.4E-46 8E-51 338.9 19.5 231 2-238 98-409 (424)
2 3vab_A Diaminopimelate decarbo 100.0 3.1E-44 1.1E-48 326.6 18.1 232 2-237 111-416 (443)
3 3n2b_A Diaminopimelate decarbo 100.0 8.2E-44 2.8E-48 323.7 16.6 231 2-236 114-414 (441)
4 2oo0_A ODC, ornithine decarbox 100.0 1.9E-41 6.6E-46 310.3 22.0 230 2-237 108-418 (471)
5 3btn_A Antizyme inhibitor 1; T 100.0 3.1E-41 1E-45 307.4 18.6 231 2-238 98-407 (448)
6 3mt1_A Putative carboxynorsper 100.0 3.9E-42 1.3E-46 305.9 11.4 214 6-237 69-343 (365)
7 3n29_A Carboxynorspermidine de 100.0 2.2E-41 7.6E-46 305.5 11.8 215 7-237 110-397 (418)
8 1f3t_A ODC, ornithine decarbox 100.0 1.5E-39 5.3E-44 294.5 21.2 230 2-238 98-408 (425)
9 2nva_A Arginine decarboxylase, 100.0 3.7E-38 1.3E-42 280.7 18.7 228 2-235 77-370 (372)
10 2j66_A BTRK, decarboxylase; bu 100.0 3.2E-38 1.1E-42 285.9 18.3 233 2-237 78-395 (428)
11 1knw_A Diaminopimelate decarbo 100.0 1.4E-37 4.8E-42 281.6 21.1 228 2-237 83-397 (425)
12 2plj_A Lysine/ornithine decarb 100.0 2.1E-37 7.3E-42 279.9 21.4 228 2-237 115-407 (419)
13 2o0t_A Diaminopimelate decarbo 100.0 1.1E-38 3.6E-43 292.1 12.8 233 2-237 103-426 (467)
14 2qgh_A Diaminopimelate decarbo 100.0 1.9E-37 6.5E-42 280.7 20.4 232 2-237 95-397 (425)
15 1twi_A Diaminopimelate decarbo 100.0 1.8E-36 6E-41 275.0 17.3 231 2-237 98-406 (434)
16 2yxx_A Diaminopimelate decarbo 100.0 2.9E-35 9.8E-40 263.3 14.2 230 2-237 75-362 (386)
17 2p3e_A Diaminopimelate decarbo 100.0 2.5E-34 8.7E-39 259.7 15.4 232 2-237 94-396 (420)
18 3nzp_A Arginine decarboxylase; 99.9 1.5E-25 5.3E-30 209.7 19.8 230 2-235 119-536 (619)
19 3nzq_A ADC, biosynthetic argin 99.9 3E-25 1E-29 208.9 20.2 158 2-164 158-375 (666)
20 3n2o_A ADC, biosynthetic argin 99.9 6.3E-25 2.2E-29 206.1 19.7 158 2-164 141-358 (648)
21 1xfc_A Alanine racemase; alpha 99.7 1.4E-17 4.7E-22 148.6 12.5 199 2-218 76-347 (384)
22 2dy3_A Alanine racemase; alpha 99.7 6.3E-17 2.2E-21 143.1 11.9 198 2-217 68-331 (361)
23 2vd8_A Alanine racemase; pyrid 99.6 2.1E-15 7.3E-20 134.7 11.6 201 3-221 78-348 (391)
24 1bd0_A Alanine racemase; isome 99.6 2.9E-15 1E-19 133.8 12.1 199 3-221 74-341 (388)
25 1vfs_A Alanine racemase; TIM-b 99.6 2.6E-15 8.9E-20 133.9 11.5 198 3-218 73-344 (386)
26 1rcq_A Catabolic alanine racem 99.5 3.4E-13 1.2E-17 118.9 11.6 193 3-216 67-326 (357)
27 3co8_A Alanine racemase; prote 99.4 7.3E-13 2.5E-17 117.8 12.4 197 3-222 75-344 (380)
28 2rjg_A Alanine racemase; alpha 99.3 1.4E-11 4.9E-16 109.5 10.5 193 3-216 87-348 (379)
29 3anu_A D-serine dehydratase; P 99.0 1E-09 3.5E-14 97.1 8.9 119 3-138 76-218 (376)
30 4ecl_A Serine racemase, vantg; 98.9 1.3E-08 4.4E-13 90.2 13.8 119 3-138 73-200 (374)
31 3cpg_A Uncharacterized protein 98.8 7.6E-09 2.6E-13 88.2 8.8 111 9-130 112-234 (282)
32 3gwq_A D-serine deaminase; str 98.7 1.9E-07 6.4E-12 84.1 12.3 121 3-138 110-248 (426)
33 3sy1_A UPF0001 protein YGGS; e 98.4 3.4E-06 1.2E-10 70.4 11.6 114 11-138 79-202 (245)
34 3llx_A Predicted amino acid al 98.2 1.1E-06 3.8E-11 77.7 6.0 116 3-138 78-214 (376)
35 3mub_A Alanine racemase; alpha 98.2 6.2E-06 2.1E-10 72.8 10.6 104 4-121 75-188 (367)
36 3kw3_A Alanine racemase; niaid 98.2 1.1E-06 3.9E-11 77.8 4.8 88 4-104 87-184 (376)
37 3e5p_A Alanine racemase; ALR, 98.2 3.1E-06 1.1E-10 74.8 7.3 89 3-104 75-174 (371)
38 4a3q_A Alanine racemase 1; iso 98.1 6.7E-06 2.3E-10 72.9 8.4 89 3-104 74-173 (382)
39 3hur_A Alanine racemase; struc 97.5 0.00036 1.2E-08 62.0 8.8 87 4-104 77-170 (395)
40 3r79_A Uncharacterized protein 96.8 0.0071 2.4E-07 50.1 9.7 87 11-108 79-175 (244)
41 1ct5_A Protein (yeast hypothet 96.2 0.0064 2.2E-07 50.7 5.4 102 12-124 85-208 (256)
42 3m1r_A Formimidoylglutamase; s 80.6 5.8 0.0002 33.7 7.9 99 7-107 181-297 (322)
43 4g3h_A Arginase (ROCF); rossma 79.7 26 0.00089 29.8 11.8 99 7-106 174-287 (330)
44 1pq3_A Arginase II, mitochondr 78.2 16 0.00054 30.6 9.9 98 7-106 165-279 (306)
45 3u0h_A Xylose isomerase domain 77.6 3 0.0001 33.8 5.0 52 78-130 85-136 (281)
46 2ef5_A Arginase; TTHA1496, str 73.6 12 0.00042 31.0 7.9 99 7-108 157-270 (290)
47 3sl1_A Arginase; metallohydrol 72.0 16 0.00055 32.2 8.4 99 7-107 262-377 (413)
48 2cev_A Protein (arginase); enz 69.2 12 0.0004 31.3 6.7 99 7-107 164-278 (299)
49 3obe_A Sugar phosphate isomera 66.8 9.8 0.00033 31.6 5.8 52 78-130 77-128 (305)
50 1ur4_A Galactanase; hydrolase, 66.6 51 0.0017 28.8 10.5 55 74-130 86-155 (399)
51 2aeb_A Arginase 1; hydrolase, 65.7 17 0.00058 30.7 7.1 98 7-106 169-283 (322)
52 3qc0_A Sugar isomerase; TIM ba 63.3 18 0.00063 28.8 6.7 53 78-135 84-140 (275)
53 3lmz_A Putative sugar isomeras 63.1 23 0.00078 28.2 7.2 43 72-117 56-98 (257)
54 3tva_A Xylose isomerase domain 62.4 16 0.00054 29.6 6.2 56 74-130 48-116 (290)
55 3cqj_A L-ribulose-5-phosphate 61.7 23 0.0008 28.7 7.2 58 72-130 61-122 (295)
56 3nio_A Guanidinobutyrase; PA14 60.4 4.8 0.00016 34.2 2.7 95 8-106 182-293 (319)
57 1gq6_A Proclavaminate amidino 60.4 6.7 0.00023 33.1 3.6 96 7-106 173-285 (313)
58 1xfk_A Formimidoylglutamase; f 59.9 79 0.0027 26.7 10.7 99 7-107 191-307 (336)
59 1woh_A Agmatinase; alpha/beta 59.5 76 0.0026 26.4 12.2 95 11-107 175-281 (305)
60 3niq_A 3-guanidinopropionase; 58.4 4.6 0.00016 34.4 2.2 95 8-106 179-290 (326)
61 1i60_A IOLI protein; beta barr 57.7 30 0.001 27.5 7.0 52 78-134 85-139 (278)
62 2r47_A Uncharacterized protein 57.5 5.6 0.00019 30.2 2.3 89 9-100 26-127 (157)
63 3vni_A Xylose isomerase domain 55.6 14 0.00049 29.9 4.8 53 77-130 88-146 (294)
64 2a0m_A Arginase superfamily pr 55.4 52 0.0018 27.6 8.4 100 7-108 175-289 (316)
65 3lhl_A Putative agmatinase; pr 55.4 87 0.003 25.8 12.1 98 8-107 149-255 (287)
66 3kws_A Putative sugar isomeras 54.2 34 0.0012 27.5 6.9 51 77-130 104-160 (287)
67 3l23_A Sugar phosphate isomera 52.8 47 0.0016 27.2 7.6 52 76-130 107-158 (303)
68 2qul_A D-tagatose 3-epimerase; 52.3 23 0.00078 28.5 5.5 53 77-130 88-147 (290)
69 3no5_A Uncharacterized protein 49.6 60 0.002 26.8 7.6 47 71-119 24-74 (275)
70 2kks_A Uncharacterized protein 48.9 29 0.00099 25.5 5.1 35 70-104 53-88 (146)
71 3hgj_A Chromate reductase; TIM 48.8 47 0.0016 28.3 7.1 47 43-101 215-261 (349)
72 2x7v_A Probable endonuclease 4 48.3 30 0.001 27.7 5.6 57 73-130 43-103 (287)
73 3pzl_A Agmatine ureohydrolase; 48.2 18 0.00062 30.5 4.3 88 8-99 172-271 (313)
74 1i60_A IOLI protein; beta barr 47.7 44 0.0015 26.4 6.5 50 80-130 49-98 (278)
75 2zvr_A Uncharacterized protein 47.4 33 0.0011 27.7 5.7 52 78-130 69-127 (290)
76 3qxb_A Putative xylose isomera 47.0 16 0.00053 30.3 3.7 52 78-130 115-172 (316)
77 3qc0_A Sugar isomerase; TIM ba 47.0 36 0.0012 27.0 5.9 52 78-130 46-97 (275)
78 3cny_A Inositol catabolism pro 46.6 71 0.0024 25.6 7.7 53 77-130 90-155 (301)
79 3p6l_A Sugar phosphate isomera 46.5 45 0.0015 26.4 6.3 29 73-101 59-87 (262)
80 2xvc_A ESCRT-III, SSO0910; cel 46.2 12 0.00042 23.3 2.1 21 71-91 34-54 (59)
81 3kws_A Putative sugar isomeras 45.2 49 0.0017 26.6 6.5 53 77-130 64-118 (287)
82 1r85_A Endo-1,4-beta-xylanase; 44.1 34 0.0012 29.6 5.5 40 77-116 212-253 (379)
83 3tva_A Xylose isomerase domain 43.4 45 0.0015 26.8 6.0 51 77-130 102-153 (290)
84 3ngf_A AP endonuclease, family 43.4 34 0.0012 27.3 5.2 51 77-130 93-145 (269)
85 3obe_A Sugar phosphate isomera 43.3 59 0.002 26.7 6.7 51 77-130 114-164 (305)
86 3u0h_A Xylose isomerase domain 42.8 32 0.0011 27.4 4.9 50 78-130 48-98 (281)
87 1k77_A EC1530, hypothetical pr 42.5 55 0.0019 25.7 6.3 50 80-130 43-99 (260)
88 2fiq_A Putative tagatose 6-pho 42.1 1.8E+02 0.0061 25.6 9.8 108 22-138 3-124 (420)
89 3qy7_A Tyrosine-protein phosph 41.7 46 0.0016 27.1 5.7 47 75-121 18-66 (262)
90 3vni_A Xylose isomerase domain 41.1 81 0.0028 25.2 7.2 55 75-130 45-102 (294)
91 3qxb_A Putative xylose isomera 40.5 90 0.0031 25.4 7.5 52 78-130 71-128 (316)
92 3dx5_A Uncharacterized protein 38.9 40 0.0014 27.0 5.0 53 78-135 85-140 (286)
93 1k77_A EC1530, hypothetical pr 38.7 51 0.0018 25.8 5.5 51 77-130 85-138 (260)
94 1qtw_A Endonuclease IV; DNA re 38.5 40 0.0014 26.9 4.9 55 75-130 45-103 (285)
95 2kcq_A MOV34/MPN/PAD-1 family; 38.1 26 0.0009 25.9 3.4 36 69-104 54-90 (153)
96 3l5l_A Xenobiotic reductase A; 37.8 43 0.0015 28.7 5.1 48 43-102 221-269 (363)
97 2qw5_A Xylose isomerase-like T 37.8 82 0.0028 26.0 6.8 53 77-130 65-123 (335)
98 1ur1_A Endoxylanase; hydrolase 37.5 38 0.0013 29.3 4.8 40 77-116 209-250 (378)
99 2y7e_A 3-keto-5-aminohexanoate 37.5 95 0.0032 25.7 7.0 46 72-119 29-78 (282)
100 1w32_A Endo-1,4-beta-xylanase 37.2 50 0.0017 28.2 5.4 38 78-115 193-232 (348)
101 1bxb_A Xylose isomerase; xylos 36.7 82 0.0028 26.9 6.8 54 76-130 68-130 (387)
102 3dx5_A Uncharacterized protein 36.4 51 0.0017 26.4 5.2 29 79-108 125-153 (286)
103 1a0c_A Xylose isomerase; ketol 35.6 99 0.0034 27.2 7.2 50 78-130 168-224 (438)
104 3ngf_A AP endonuclease, family 35.4 71 0.0024 25.3 5.9 51 79-130 50-107 (269)
105 3cqj_A L-ribulose-5-phosphate 35.4 60 0.0021 26.1 5.5 51 77-130 108-161 (295)
106 2uwf_A Endoxylanase, alkaline 35.1 44 0.0015 28.6 4.8 37 79-115 204-242 (356)
107 1xim_A D-xylose isomerase; iso 34.5 85 0.0029 26.8 6.6 54 76-130 68-130 (393)
108 1xla_A D-xylose isomerase; iso 34.1 99 0.0034 26.4 6.9 52 78-130 70-130 (394)
109 3m6y_A 4-hydroxy-2-oxoglutarat 34.1 43 0.0015 27.4 4.1 50 73-122 218-272 (275)
110 2z1c_A Hydrogenase expression/ 33.3 20 0.00067 23.6 1.7 13 202-214 34-46 (75)
111 1z41_A YQJM, probable NADH-dep 33.0 85 0.0029 26.4 6.2 44 47-102 209-252 (338)
112 2hk0_A D-psicose 3-epimerase; 32.7 68 0.0023 26.1 5.5 53 77-130 107-165 (309)
113 3ayv_A Putative uncharacterize 32.1 46 0.0016 26.2 4.1 51 77-130 76-131 (254)
114 2zds_A Putative DNA-binding pr 31.8 1.1E+02 0.0039 24.9 6.7 54 76-130 50-125 (340)
115 3ktc_A Xylose isomerase; putat 31.4 86 0.003 25.9 6.0 52 78-130 62-121 (333)
116 2ot2_A Hydrogenase isoenzymes 31.3 21 0.00072 24.4 1.6 13 202-214 40-52 (90)
117 1olt_A Oxygen-independent copr 31.0 1.1E+02 0.0039 26.8 6.9 47 73-119 185-231 (457)
118 1n82_A Xylanase, intra-cellula 30.9 57 0.0019 27.5 4.7 37 79-115 190-228 (331)
119 2qw5_A Xylose isomerase-like T 30.9 77 0.0026 26.1 5.5 52 77-130 109-178 (335)
120 2ki0_A DS119; beta-alpha-beta, 30.5 42 0.0014 17.9 2.3 22 72-93 10-31 (36)
121 3emz_A Xylanase, endo-1,4-beta 30.4 48 0.0016 28.1 4.1 37 79-115 189-227 (331)
122 1ta3_B Endo-1,4-beta-xylanase; 30.3 54 0.0018 27.3 4.4 38 78-115 185-224 (303)
123 1w8s_A FBP aldolase, fructose- 29.7 79 0.0027 25.6 5.3 93 21-130 44-139 (263)
124 2hk0_A D-psicose 3-epimerase; 29.6 2.2E+02 0.0074 22.9 8.1 52 77-130 66-121 (309)
125 2wje_A CPS4B, tyrosine-protein 29.2 84 0.0029 24.9 5.3 46 76-121 23-70 (247)
126 3l5a_A NADH/flavin oxidoreduct 29.2 49 0.0017 29.1 4.1 48 45-102 240-288 (419)
127 3aam_A Endonuclease IV, endoiv 29.1 98 0.0034 24.4 5.7 13 21-33 17-29 (270)
128 2qul_A D-tagatose 3-epimerase; 29.1 1.2E+02 0.0041 24.0 6.3 53 77-130 47-102 (290)
129 2zds_A Putative DNA-binding pr 28.8 84 0.0029 25.7 5.4 51 77-130 111-174 (340)
130 1muw_A Xylose isomerase; atomi 28.6 1.1E+02 0.0037 26.1 6.2 53 77-130 69-130 (386)
131 2q02_A Putative cytoplasmic pr 28.6 52 0.0018 26.0 3.9 49 77-130 85-134 (272)
132 1us2_A Xylanase10C, endo-beta- 28.4 63 0.0022 29.4 4.8 38 78-115 361-400 (530)
133 3l23_A Sugar phosphate isomera 28.0 1.1E+02 0.0039 24.8 6.0 50 80-130 62-122 (303)
134 3m0m_A L-rhamnose isomerase; b 28.0 83 0.0029 27.8 5.4 53 77-130 107-173 (438)
135 3niy_A Endo-1,4-beta-xylanase; 28.0 88 0.003 26.6 5.4 38 78-115 204-243 (341)
136 1v0l_A Endo-1,4-beta-xylanase 27.8 41 0.0014 28.2 3.2 36 80-115 186-223 (313)
137 1ps9_A 2,4-dienoyl-COA reducta 27.7 81 0.0028 29.2 5.5 47 43-101 204-250 (671)
138 2lkt_A Retinoic acid receptor 27.3 33 0.0011 24.4 2.3 17 202-219 6-22 (125)
139 1vbk_A Hypothetical protein PH 27.2 1.3E+02 0.0045 24.9 6.3 45 83-138 195-242 (307)
140 1vm6_A DHPR, dihydrodipicolina 26.2 47 0.0016 26.7 3.2 47 8-56 53-108 (228)
141 3cny_A Inositol catabolism pro 26.0 1.2E+02 0.0041 24.2 5.8 49 78-130 56-104 (301)
142 2ftp_A Hydroxymethylglutaryl-C 25.9 2.4E+02 0.0082 23.1 7.7 15 20-34 85-99 (302)
143 1xyz_A 1,4-beta-D-xylan-xylano 25.8 76 0.0026 26.9 4.6 26 78-103 210-237 (347)
144 2dep_A Xylanase B, thermostabl 25.0 84 0.0029 26.8 4.8 37 79-115 203-241 (356)
145 3t7v_A Methylornithine synthas 24.3 1.6E+02 0.0054 24.5 6.4 42 73-116 184-225 (350)
146 3noy_A 4-hydroxy-3-methylbut-2 23.5 2E+02 0.0067 24.8 6.6 51 76-130 119-177 (366)
147 3m0z_A Putative aldolase; MCSG 23.0 35 0.0012 27.6 1.7 45 73-117 195-244 (249)
148 1hjs_A Beta-1,4-galactanase; 4 22.9 3.3E+02 0.011 22.6 8.6 55 74-130 57-125 (332)
149 1tz9_A Mannonate dehydratase; 22.8 1.8E+02 0.0062 24.4 6.5 51 75-130 53-109 (367)
150 3gr7_A NADPH dehydrogenase; fl 22.8 1.6E+02 0.0055 24.8 6.1 44 47-102 209-252 (340)
151 2der_A TRNA-specific 2-thiouri 22.4 1.1E+02 0.0039 26.3 5.1 56 73-138 27-85 (380)
152 2r14_A Morphinone reductase; H 22.2 96 0.0033 26.7 4.6 49 44-102 230-278 (377)
153 3m07_A Putative alpha amylase; 22.1 4.3E+02 0.015 24.1 9.3 33 69-102 196-230 (618)
154 3k30_A Histamine dehydrogenase 22.0 1.4E+02 0.0048 27.6 6.0 47 43-102 220-266 (690)
155 3dnj_A ATP-dependent CLP prote 22.0 1.8E+02 0.0062 19.3 5.7 51 71-135 29-79 (85)
156 1vyr_A Pentaerythritol tetrani 21.8 1.1E+02 0.0039 26.0 5.0 50 43-101 224-273 (364)
157 1oft_A SULA, hypothetical prot 21.7 84 0.0029 23.7 3.6 29 4-32 94-125 (161)
158 3aal_A Probable endonuclease 4 21.3 1.7E+02 0.0059 23.5 5.9 52 76-130 52-108 (303)
159 1xla_A D-xylose isomerase; iso 21.3 1.4E+02 0.0049 25.4 5.6 49 78-129 117-172 (394)
160 2d1z_A Endo-1,4-beta-D-xylanas 21.2 62 0.0021 28.3 3.2 37 79-115 185-223 (436)
161 4gib_A Beta-phosphoglucomutase 21.1 27 0.00093 27.5 0.8 30 4-35 182-211 (250)
162 2q02_A Putative cytoplasmic pr 20.9 1.9E+02 0.0065 22.5 6.0 48 78-130 52-99 (272)
163 3kru_A NADH:flavin oxidoreduct 20.6 2.3E+02 0.008 23.9 6.7 47 43-102 206-252 (343)
164 3kbb_A Phosphorylated carbohyd 20.6 44 0.0015 25.1 1.9 28 4-33 152-179 (216)
165 3iv3_A Tagatose 1,6-diphosphat 20.6 2.2E+02 0.0075 24.1 6.4 46 83-130 116-161 (332)
166 3iwp_A Copper homeostasis prot 20.4 3.6E+02 0.012 22.3 7.5 90 12-114 40-148 (287)
167 1tz9_A Mannonate dehydratase; 20.2 1.3E+02 0.0045 25.3 5.1 25 76-100 94-118 (367)
168 2cw6_A Hydroxymethylglutaryl-C 20.0 3.6E+02 0.012 21.9 8.3 12 82-93 126-137 (298)
No 1
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=100.00 E-value=2.4e-46 Score=338.94 Aligned_cols=231 Identities=33% Similarity=0.529 Sum_probs=188.0
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCc--c-CHHHHc--cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCH
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFDY--A-SQAEIK--GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANL 76 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~--~-s~~EL~--~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~ 76 (240)
++++|+++++|+|+||+|++++|++|+++|+.. + |++||+ .+..++++|.||||+ +...+.... .||||+++
T Consensus 98 ~~~~G~~~~~Ii~~g~~k~~~ei~~a~~~gv~~~~vds~~el~~l~~~~~~~~v~lRvn~-~~~~~~~~~--~skfG~~~ 174 (424)
T 7odc_A 98 VQGLGVPAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRIAT-DDSKAVCRL--SVKFGATL 174 (424)
T ss_dssp HHHTTCCGGGEEECCSSCCHHHHHHHHHTTCCEEEECSHHHHHHHHHHCTTCEEEEEBCC--------------CCCBCH
T ss_pred HHHcCCChhhEEECCCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHhCCCCeEEEEECC-CCCCCCCCC--CCCCCCCH
Confidence 577899999999999999999999999999974 3 999999 566677999999999 543332223 34999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc------------------
Q 048797 77 AEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH------------------ 138 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld------------------ 138 (240)
+++.++++.+++.++++.|||||+|||+.|++.|.++++.+.++++. .++.|+ ++++||
T Consensus 175 ~~~~~~~~~~~~~~l~l~Glh~H~gsq~~d~~~~~~a~~~~~~~~~~-~~~~G~--~~~~ldiGGG~~~~~~~~~~~~~~ 251 (424)
T 7odc_A 175 KTSRLLLERAKELNIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDM-ATEVGF--SMHLLDIGGGFPGSEDTKLKFEEI 251 (424)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCCCSSCCCTHHHHHHHHHHHHHHHH-HHHHTC--CCCEEECCCCCCCSSSSSSCHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH-HHhcCC--CCCEEEeCCCcCCCCCCCCCHHHH
Confidence 99999999998889999999999999999999999999999999987 677899 999999
Q ss_pred --hhHHHHhhhcCC--------CC--eeeeCceEEEEe------Cc------------------e-e---------eeec
Q 048797 139 --WRRGRADCHFGA--------GP--FPRDSAFTLATR------NC------------------R-E---------SSAC 172 (240)
Q Consensus 139 --~i~~~l~~~~~~--------~p--~lva~a~~l~t~------n~------------------~-~---------P~~~ 172 (240)
.|++.++++|+. || |+|++||+|+|+ +. . + |.++
T Consensus 252 a~~i~~~~~~~~~~~~~~~ii~EPGR~lva~ag~lv~~V~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ly 331 (424)
T 7odc_A 252 TSVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKTVWKEQPGSDDEDESNEQTFMYYVNDGVYGSFNCILY 331 (424)
T ss_dssp HHHHHHHHHHHSCGGGTCEEEECCSHHHHGGGEEEEEEEEEEEEEC-------------CCEEEEEESCCTTTTTHHHHH
T ss_pred HHHHHHHHHHHhcccCCcEEEECCCHHhhhhcEEEEEEEEEEEEccccccccccccccCcceEEEEEeCCcCCChhhHhh
Confidence 456677777652 25 999999999998 10 0 0 2221
Q ss_pred cC---------CC-CCCCeeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCeeEEe
Q 048797 173 SN---------RT-CTGMIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTCL 238 (240)
Q Consensus 173 ~~---------~~-~~~~~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~~i 238 (240)
.. .. ...+.++++|+||||+++|+|.+++ |++++||||+|.+|||||++|+|+||++++|++++++
T Consensus 332 ~~~~~~p~~~~~~~~~~~~~~~~v~Gp~C~s~D~l~~~~~Lp~l~~GD~l~~~~~GAY~~s~ss~fN~~~~p~~v~~~ 409 (424)
T 7odc_A 332 DHAHVKALLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVM 409 (424)
T ss_dssp SCCCCCCEESSCCCTTCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCCCGGGCCCCEEEEEE
T ss_pred ccCccceeeecCCCCCCCeeeEEEECCCCCCCCEecccccCCCCCCCCEEEECCCCCCchhhccCCCCCCCCeEEEEE
Confidence 11 00 1223578999999999999999888 9999999999999999999999999999999866554
No 2
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Probab=100.00 E-value=3.1e-44 Score=326.62 Aligned_cols=232 Identities=19% Similarity=0.158 Sum_probs=185.7
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCC-cc--CHHHHc------cccCCCCcEEEEEeeCCCC---CCcccCCC-
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFD-YA--SQAEIK------GKWHPRCDLLIRIKALDDC---KAVCPQAQ- 68 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~-~~--s~~EL~------~~~~~~~~v~lRi~~~~~~---~~~~~~~~- 68 (240)
++++|+++++|+|+||+|++++|++|+++|+. ++ |++||+ .+.++.++|+||||| +.. +..+.++.
T Consensus 111 ~~~~G~~~~~I~~~g~~k~~~ei~~a~~~gv~~~~vds~~el~~l~~~a~~~~~~~~V~lRVn~-~~~~~~~~~i~tG~~ 189 (443)
T 3vab_A 111 ALAAGIPANRIVFSGVGKTPREMDFALEAGIYCFNVESEPELEILSARAVAAGKVAPVSLRINP-DVDAKTHAKISTGKS 189 (443)
T ss_dssp HHHTTCCGGGEEEECTTCCHHHHHHHHHHTCSEEEECCHHHHHHHHHHHHHHTCCEEEEEEEEC-CBCTTTCCBC---CC
T ss_pred HHHcCCChhhEEEcCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHhcCCCceEEEEECC-CCCCCCCcccccCCC
Confidence 56789999999999999999999999999997 44 999998 234567899999999 532 23333342
Q ss_pred CCCCCCCHHHHHHHHHHHHhC-CCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc---------
Q 048797 69 DSKCGANLAEIGALLEAALAS-QLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH--------- 138 (240)
Q Consensus 69 ~skFG~~~~~~~~~l~~a~~~-~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld--------- 138 (240)
.||||++++++.++++.++++ ++++.|||||+|||+.|++.|.++++.+.++++. .++.|+ ++++||
T Consensus 190 ~sRfGi~~~e~~~ll~~~~~~~~l~l~Glh~H~gs~~~d~~~~~~a~~~~~~l~~~-l~~~G~--~l~~ldiGGG~~i~y 266 (443)
T 3vab_A 190 ENKFGIPRDKARAAYARAASLPGLNVVGIDMHIGSQIIDLEPFDNAFALMAELVKE-LQADGH--NIRHVDVGGGLGIPY 266 (443)
T ss_dssp CCSSSEEGGGHHHHHHHHHHSTTEEEEEEECCCCSSBCCSHHHHHHHHHHHHHHHH-HHHTTC--CCCEEECCCCBCCCC
T ss_pred CCCCcCCHHHHHHHHHHHhhCCCceEEEEEEeccCCCCCHHHHHHHHHHHHHHHHH-HHHcCC--CCCEEEeCCCcccCc
Confidence 579999999999999998887 5999999999999999999999999999999998 445688 899999
Q ss_pred ---------------hhHHHHhhhcC---CCC--eeeeCceEEEEe-------------------Ccee-eeeccCC---
Q 048797 139 ---------------WRRGRADCHFG---AGP--FPRDSAFTLATR-------------------NCRE-SSACSNR--- 175 (240)
Q Consensus 139 ---------------~i~~~l~~~~~---~~p--~lva~a~~l~t~-------------------n~~~-P~~~~~~--- 175 (240)
.|.+.++++-. -|| |+|++||+|+++ |.++ |.++...
T Consensus 267 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EPGR~lva~ag~lv~~V~~~K~~~~~~~~~vD~gm~~~~rp~ly~~~~~~ 346 (443)
T 3vab_A 267 RTPNTPPPPPVAYAQIVAKHIKPLGLKTVFEPGRLIVGNAGLLVTEVIFVKEGDAKNFVIVDAAMNDLIRPTLYDAFHDI 346 (443)
T ss_dssp CCC---CCCHHHHHHHHHHHHGGGCSEEEECCSHHHHGGGEEEEEEEEEEEECSSCEEEEESCCTTTCCHHHHHCCCCCE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCEEEEecCHHHhhcccEEEEEEEEEEecCCeeEEEEccccccccchHHhCcccee
Confidence 23333443211 136 999999999999 1111 3332211
Q ss_pred -----C-CCCCeeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCeeEE
Q 048797 176 -----T-CTGMIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTC 237 (240)
Q Consensus 176 -----~-~~~~~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~~ 237 (240)
. ...+..+++|+||+|++.|+|.+++ |++++||||+|.||||||++|+++||++++|++|++
T Consensus 347 ~~~~~~~~~~~~~~~~v~Gp~C~s~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~ss~fN~~~~p~~v~v 416 (443)
T 3vab_A 347 RPVIMPNDNAPRIRADFVGPVCETGDYLGLDREVAKPAPGDLIAICTTGAYGAVLSSTYNSRLLIPEVLG 416 (443)
T ss_dssp EESBCCCTTSCEEEEEEECSSSSTTCEEEEEEEEECCCTTCEEEEESCTTTTGGGCCCGGGCCCCCEEEE
T ss_pred EEcccCCCCCCceEEEEEccCCCCCCEEeeccCcCCCCCCCEEEEeCCCcCchhhhccccCCCCCcEEEE
Confidence 0 1234678999999999999999988 899999999999999999999999999999986543
No 3
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae}
Probab=100.00 E-value=8.2e-44 Score=323.68 Aligned_cols=231 Identities=22% Similarity=0.225 Sum_probs=184.6
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCc-c--CHHHHc------cccCCCCcEEEEEeeCCCC-C--CcccCCC-
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFDY-A--SQAEIK------GKWHPRCDLLIRIKALDDC-K--AVCPQAQ- 68 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~-~--s~~EL~------~~~~~~~~v~lRi~~~~~~-~--~~~~~~~- 68 (240)
++++|+++++|+|+||+|++++|++|+++|+.+ + |++||+ .+.++.++|+||||| +.. + ..+.++.
T Consensus 114 ~~~~G~~~~~I~~~g~~k~~~ei~~a~~~gv~~~~vds~~el~~l~~~a~~~~~~~~V~lRvn~-~~~~~~~~~i~tG~~ 192 (441)
T 3n2b_A 114 VLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKCFNVESEPELQRLNKVAGELGVKAPISLRINP-DVDAKTHPYISTGLR 192 (441)
T ss_dssp HHHTTCCGGGEEECCTTCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCC-CCCTTTCHHHHHHHH
T ss_pred HHHcCCCcccEEEcCCCCCHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHhcCCCcEEEEEecc-CCCcCCCcccccCCC
Confidence 567899999999999999999999999999973 3 999998 234678999999999 532 1 1122221
Q ss_pred CCCCCCCHHHHHHHHHHHHhC-CCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc---------
Q 048797 69 DSKCGANLAEIGALLEAALAS-QLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH--------- 138 (240)
Q Consensus 69 ~skFG~~~~~~~~~l~~a~~~-~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld--------- 138 (240)
.||||++++++.++++.++++ ++++.|||||+|||+.|++.|.++++.+.+++++ .++.|+ ++++||
T Consensus 193 ~sKfG~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~d~~~~~~a~~~~~~l~~~-l~~~G~--~l~~LdiGGG~gi~y 269 (441)
T 3n2b_A 193 DNKFGITFDRAAQVYRLAHSLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDS-LKAEGI--HIRHLDVGGGLGVVY 269 (441)
T ss_dssp TSSSSBCGGGHHHHHHHHHHCTTEEEEEEECCTTCSCCCHHHHHHHHHHHHHHHHH-HHHTTC--CCCEEECCSCCCEEC
T ss_pred CCcccCCHHHHHHHHHHHhcCCCeEEEEEEEeecCCCCCHHHHHHHHHHHHHHHHH-HHHcCC--CCCEEEECCCcccCC
Confidence 469999999999999988886 8999999999999999999999999999999999 556799 999999
Q ss_pred -------------hhHHHHhhhcCC----CC--eeeeCceEEEEe-------------------Ccee-eeeccCC----
Q 048797 139 -------------WRRGRADCHFGA----GP--FPRDSAFTLATR-------------------NCRE-SSACSNR---- 175 (240)
Q Consensus 139 -------------~i~~~l~~~~~~----~p--~lva~a~~l~t~-------------------n~~~-P~~~~~~---- 175 (240)
.|.+.++++++. || |+|++||+|+++ |.++ |.++...
T Consensus 270 ~~~~~~~~~~~~~~i~~~l~~~~~~~l~~EPGR~lva~ag~lv~~V~~~K~~~~~~~~~vD~gm~~~~rp~ly~~~~~~~ 349 (441)
T 3n2b_A 270 RDELPPQPSEYAKALLDRLERHRDLELIFEPGRAIAANAGVLVTKVEFLKHTEHKNFAIIDAAMNDLIRPALYQAWQDII 349 (441)
T ss_dssp -----CEECHHHHHHHHHHTTTCCSEEEECCSHHHHGGGEEEEEEEEEEEEC--CEEEEESCCTTTCCC-------CCEE
T ss_pred CCCCCCCHHHHHHHHHHHHHhccCCEEEEeCCHHHHhhccEEEEEEEEEEecCCceEEEEccccccccchHHhCcccceE
Confidence 344445543222 36 999999999999 1111 4433221
Q ss_pred ---CCCCCeeeEEEeccCcCCCcccccCC-CCCCCCCEEEEcCCCccccccCCCCCCCCCCCeeE
Q 048797 176 ---TCTGMIYNSTVFGPTLDAYDKLFTGH-PELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPT 236 (240)
Q Consensus 176 ---~~~~~~~~~~i~G~~C~~~D~l~~~~-p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~ 236 (240)
....+..+++|+||+|++.|+|.+++ -++++||||+|.||||||++|+++||++++|++|+
T Consensus 350 ~~~~~~~~~~~~~v~Gp~C~s~D~l~~~~~l~l~~GD~l~~~~~GAY~~~~ss~fN~~~~p~~v~ 414 (441)
T 3n2b_A 350 PLRPRQGEAQTYDLVGPVCETSDFLGKDRDLVLQEGDLLAVRSSGAYGFTMSSNYNTRPRVAEVM 414 (441)
T ss_dssp ESSCCSSCCEEEEEECSSSSTTCEEEEEEEECCCTTCEEEESSCSSSSGGGCBCTTTCCCCEEEE
T ss_pred EccCCCCCceeEEEECCcCCCCCEEeeccccCCCCCCEEEEeCCCcCchhhhccccCCCCCcEEE
Confidence 01234678999999999999999887 36999999999999999999999999999998554
No 4
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.9e-41 Score=310.32 Aligned_cols=230 Identities=33% Similarity=0.516 Sum_probs=188.6
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCC-cc--CHHHHc--cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCH
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFD-YA--SQAEIK--GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANL 76 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~-~~--s~~EL~--~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~ 76 (240)
++++|+++++|+|+||+|++++|++|+++|+. ++ |++||+ .+..++++|.||||+ +...+..... ||||+++
T Consensus 108 ~~~aG~~~~~iv~~g~~k~~~ei~~a~~~gv~~~~vds~~el~~l~~~~~~~~V~lRvn~-g~~~~~~~~~--~RfG~~~ 184 (471)
T 2oo0_A 108 VQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIAT-DDSKAVCRLS--VKFGATL 184 (471)
T ss_dssp HHHTTCCGGGEEECCSSCCHHHHHHHHHTTCCEEEECSHHHHHHHHHHCTTCEEEEEECC-CCTTSSBCCT--TTSCBCH
T ss_pred HHHcCCChhhEEEeCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHhCCCCeEEEEEcC-CCCCCCCCCC--CCCCCCH
Confidence 56789999999999999999999999999996 33 999999 455667999999999 6544333333 4999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc------------------
Q 048797 77 AEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH------------------ 138 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld------------------ 138 (240)
+++.++++.+++.++++.|+|||+||+..+.+.|.++++.+.++++. .++.|+ ++++||
T Consensus 185 ~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~a~~~~~~~~~~-~~~~G~--~~~~ldiGGG~~~~~~~~~~~~~~ 261 (471)
T 2oo0_A 185 RTSRLLLERAKELNIDVVGVSFHVGSGCTDPETFVQAISDARCVFDM-GAEVGF--SMYLLDIGGGFPGSEDVKLKFEEI 261 (471)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECCCBSCCCTHHHHHHHHHHHHHHHH-HHHHTC--CCCEEECCCCCCSSSSSSSCHHHH
T ss_pred HHHHHHHHHHHhCCCcEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH-HHHcCC--CCCEEEECCCcCCCCCCCCCHHHH
Confidence 99999999988889999999999999999999999999998888887 667788 888888
Q ss_pred --hhHHHHhhhcCC--------CC--eeeeCceEEEEe------Cc----------------e---e---------eeec
Q 048797 139 --WRRGRADCHFGA--------GP--FPRDSAFTLATR------NC----------------R---E---------SSAC 172 (240)
Q Consensus 139 --~i~~~l~~~~~~--------~p--~lva~a~~l~t~------n~----------------~---~---------P~~~ 172 (240)
.|+..++++++. +| |++++||+|+++ .. . + |.++
T Consensus 262 ~~~i~~~l~~~~p~~~~~~li~EpGR~~v~~ag~l~t~V~~vK~~~~~~v~y~~~~~~~~~~~~~~i~~G~~~~~~~~L~ 341 (471)
T 2oo0_A 262 TGVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFNCILY 341 (471)
T ss_dssp HHHHHHHHHHHSCGGGTCEEEECCSHHHHGGGEEEEEEEEEEEEEC-------------CCEEEEEESCCTTTGGGHHHH
T ss_pred HHHHHHHHHHHhcccCCcEEEecCccceecCcEEEEEEEEEEEecCccccccccccccCCceEEEEEECCcccchhhHhh
Confidence 455667777652 35 999999999998 10 0 0 1111
Q ss_pred cCC---------C-CCCCeeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCeeEE
Q 048797 173 SNR---------T-CTGMIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTC 237 (240)
Q Consensus 173 ~~~---------~-~~~~~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~~ 237 (240)
... . ..++..+++|+||+|+++|++..++ |++++||||+|.++|||+++|+++||++++|+++++
T Consensus 342 ~~~~~~~vl~~~~~~~~~~~~~~I~G~~C~s~D~l~~d~~lp~l~~GD~l~~~~~GAY~~s~~s~fN~~~~p~~v~~ 418 (471)
T 2oo0_A 342 DHAHVKPLLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYV 418 (471)
T ss_dssp SCCCCCCEESSCCCTTCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCCCGGGCCCCEEEEE
T ss_pred ccCcceeeeccCCCCCCCeeEEEEECCCCCCCCEEeeccCCCCCCCCCEEEEeCCCcchhhhhccccCCCCCeEEEE
Confidence 110 0 0123467999999999999999888 899999999999999999999999999999975544
No 5
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=100.00 E-value=3.1e-41 Score=307.44 Aligned_cols=231 Identities=26% Similarity=0.437 Sum_probs=183.9
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCC-cc--CHHHHc--cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCH
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFD-YA--SQAEIK--GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANL 76 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~-~~--s~~EL~--~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~ 76 (240)
++++|+++++|+|+||+|++++|++|+++|+. ++ |++||+ .+..++++|.||||+ +...+.... .||||+++
T Consensus 98 ~~~aG~~~~~iv~~g~~k~~~ei~~a~~~gv~~~~vds~~el~~l~~~~~~~~v~lRin~-g~~~~~~~~--~~RfG~~~ 174 (448)
T 3btn_A 98 VQELGVSPENIIFTSPCKQVSQIKYAAKVGVNIMTCDNEIELKKIARNHPNAKVLLHIAT-EDNIGGEDG--NMKFGTTL 174 (448)
T ss_dssp HHHTTCCGGGEEECCSSCCHHHHHHHHHHTCCEEEECSHHHHHHHHHHCTTCEEEEEBCC-CC----------CCCCBCH
T ss_pred HHHcCCChhhEEEcCCCCCHHHHHHHHHcCCCEEEeCCHHHHHHHHHhCCCCeEEEEEec-CCCccCCCC--CCcCCCCH
Confidence 56789999999999999999999999999986 33 999999 455567899999999 644333333 34999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc-----------------h
Q 048797 77 AEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH-----------------W 139 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld-----------------~ 139 (240)
+++.++++.+++.++++.|+|||+||+..+++.|.++++.+.++++. .++.|+ ++++|| .
T Consensus 175 ~~~~~~~~~~~~~~l~~~Gl~~H~gs~~~d~~~~~~~~~~~~~~~~~-~~~~G~--~~~~ldiGGG~~~~~~~~~~~~~~ 251 (448)
T 3btn_A 175 KNCRHLLECAKELDVQIIGVKFHVSSACKEYQVYVHALSDARCVFDM-AGEFGF--TMNMLDIGGGFTGTEIQLEEVNHV 251 (448)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECCCCTTCCCTTHHHHHHHHHHHHHHH-HHHTTC--CCCEEECCSCCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH-HHHcCC--CCCEEEeCCCcCCCCCCHHHHHHH
Confidence 99999999888889999999999999999999999999988888887 677898 888888 2
Q ss_pred hHHHHhhhcCC--------CC--eeeeCceEEEEe------Cc------------------ee-----------eeeccC
Q 048797 140 RRGRADCHFGA--------GP--FPRDSAFTLATR------NC------------------RE-----------SSACSN 174 (240)
Q Consensus 140 i~~~l~~~~~~--------~p--~lva~a~~l~t~------n~------------------~~-----------P~~~~~ 174 (240)
|+..++++++. +| |++++||+|+++ +. .+ |.++..
T Consensus 252 v~~~i~~~~p~~~~~~l~~EpGR~~v~~ag~l~t~V~~vK~~~~g~~vsyg~~~~~~~~~~~~~i~~G~~d~~~~~l~~~ 331 (448)
T 3btn_A 252 ISPLLDIYFPEGSGIQIISEPGSYYVSSAFTLAVNIIAKKVVENDKFSSGVEKNGSDEPAFVYYMNDGVYGSFASKLSED 331 (448)
T ss_dssp HHHHHHHHSCTTSCCEEEECCSHHHHTTTEEEEEEEEEEEEC-----------------CEEEEESCCTTTTTGGGGC--
T ss_pred HHHHHHHHhcccCCcEEEEeCCcceeeeeEEEEEEEEEEEecccccccccccccccCCceEEEEEccccccccchhhhcc
Confidence 44556667653 25 899999999998 10 11 211111
Q ss_pred CC------C----CCCeeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCeeEEe
Q 048797 175 RT------C----TGMIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTCL 238 (240)
Q Consensus 175 ~~------~----~~~~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~~i 238 (240)
.. . .++..+++|+||+|+++|++..++ |++++||||+|.++|||+++|+++||++++|+++++.
T Consensus 332 ~~~~~vl~~~~~~~~~~~~~~v~G~~C~s~D~l~~d~~lp~l~~GD~l~~~~~GAY~~~~~s~fN~~~~p~~v~~~ 407 (448)
T 3btn_A 332 LNTIPEVHKKYKEDEPLFTSSLWGPSCDELDQIVESCLLPELNVGDWLIFDNMGADSFHEPSAFNDFQRPAIYFMM 407 (448)
T ss_dssp --CCCEECCC-----CEEEEEEECTTCSTTCEEEEEEEEECCCTTCEEEESSCCSSCCCCCCGGGTTCCCEEEEEE
T ss_pred CcceeeeccCCCCCCCceEEEEECCCCCCCCEEeeccccCCCCCCCEEEEcCCCCCchhhcccccCCCCCeEEEEE
Confidence 00 0 123467999999999999999888 8999999999999999999999999999999765543
No 6
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti}
Probab=100.00 E-value=3.9e-42 Score=305.86 Aligned_cols=214 Identities=17% Similarity=0.117 Sum_probs=162.0
Q ss_pred CCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc--cccCCCCcEEEEEeeCCCCC---CcccCCC-CCCCCCCHH
Q 048797 6 GVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK--GKWHPRCDLLIRIKALDDCK---AVCPQAQ-DSKCGANLA 77 (240)
Q Consensus 6 G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~--~~~~~~~~v~lRi~~~~~~~---~~~~~~~-~skFG~~~~ 77 (240)
++ |++|+|.||+|++++|++|++.|+.+. |++||+ .+..++++|+||||| +... ..+.++. .||||++++
T Consensus 69 ~~-~~~ii~~~~~k~~~el~~a~~~g~~i~vds~~el~~l~~~a~~~~v~lRvnp-~~~~~~~~~i~tg~~~sKFG~~~~ 146 (365)
T 3mt1_A 69 RF-GKETHAYSVAYGDNEIDEVVSHADKIIFNSISQLERFADKAAGIARGLRLNP-QVSSSSFDLADPARPFSRLGEWDV 146 (365)
T ss_dssp HT-CSEEEEEESCCCTTTHHHHHHHCSEEEESSHHHHHHHGGGGTTSEEEEEECC-C----------------CCSBCCH
T ss_pred hC-CCceEEECCCCCHHHHHHHHHcCCEEEECCHHHHHHHHHHhccCCEEEEEec-CCCCCCCccccCCCCCCcCCCCHH
Confidence 47 689999999999999999999987654 999999 666677999999999 6432 2222332 579999999
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc-------------------
Q 048797 78 EIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH------------------- 138 (240)
Q Consensus 78 ~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld------------------- 138 (240)
++.+. .++ ++.|+|||+|||+.+++.|.++++.+.++++. .|+ ++++||
T Consensus 147 ~~~~~-----~l~-~~~Glh~HigSq~~~~~~~~~~~~~~~~~~~~----~g~--~~~~ldiGGG~~i~y~~~~~~~~~~ 214 (365)
T 3mt1_A 147 PKVER-----VMD-RINGFMIHNNCENKDFGLFDRMLGEIEERFGA----LIA--RVDWVSLGGGIHFTGDDYPVDAFSA 214 (365)
T ss_dssp HHHHT-----TGG-GCSEEEECCC--CCSHHHHHHHHHHHHHHHHH----HHT--TSSEEECCSCCCTTSTTCCHHHHHH
T ss_pred HHhhh-----ccC-CeEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH----hCC--CCCEEEeCCCcCCCCCCCCHHHHHH
Confidence 98763 222 68999999999999999999999999888766 356 777787
Q ss_pred hhHHHHhhhcC---CCC--eeeeCceEEEEe------C---ce---------e---------eeeccCCCCCCCeeeEEE
Q 048797 139 WRRGRADCHFG---AGP--FPRDSAFTLATR------N---CR---------E---------SSACSNRTCTGMIYNSTV 186 (240)
Q Consensus 139 ~i~~~l~~~~~---~~p--~lva~a~~l~t~------n---~~---------~---------P~~~~~~~~~~~~~~~~i 186 (240)
.|++.++++-. -|| |+|++||+|+++ + ++ + |.++ ...+.++++|
T Consensus 215 ~i~~~~~~~~~~l~~EPGR~lv~~ag~lv~~V~~~k~~~~~~~~vD~g~~~~~~~~~~~~~~p~l~----~~~~~~~~~v 290 (365)
T 3mt1_A 215 RLRAFSDRYGVQIYLEPGEASITKSTTLEVTVLDTLYNGKNLAIVDSSIEAHMLDLLIYRETAKVL----PNEGSHSYMI 290 (365)
T ss_dssp HHHHHHHHHTCEEEECCSHHHHTTSEEEEEEEEEEEESSSEEEEESCCHHHHCHHHHHTTCCCCCS----SCCSSEEEEE
T ss_pred HHHHHHHHhCcEEEEeCchHhhccceEEEEEEEEEEECCcEEEEEcCccccCChHHhcCCcCceec----cCCCceEEEE
Confidence 34444444311 136 999999999999 1 11 1 2221 1234678999
Q ss_pred eccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCeeEE
Q 048797 187 FGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTC 237 (240)
Q Consensus 187 ~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~~ 237 (240)
+||+|+++|+|.++. |++++||||+|.+|||||++|+|+||++++|++|++
T Consensus 291 ~Gp~C~s~D~l~~~~~~~~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~v 343 (365)
T 3mt1_A 291 CGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIR 343 (365)
T ss_dssp ECSSCCSSCEEEEEEESSCCCTTCEEEESSCCTTSTTSCCCGGGCCCCEEEEE
T ss_pred EeCCCCccCEEcccccCCCCCCCCEEEEecccchhhhhcccccCCCCCcEEEE
Confidence 999999999999877 689999999999999999999999999999975543
No 7
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp}
Probab=100.00 E-value=2.2e-41 Score=305.52 Aligned_cols=215 Identities=16% Similarity=0.122 Sum_probs=165.8
Q ss_pred CCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc--cccCCCCcEEEEEeeCCCCC---CcccCCC-CCCCCCCHHH
Q 048797 7 VSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK--GKWHPRCDLLIRIKALDDCK---AVCPQAQ-DSKCGANLAE 78 (240)
Q Consensus 7 ~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~--~~~~~~~~v~lRi~~~~~~~---~~~~~~~-~skFG~~~~~ 78 (240)
+ |++|+|.||+|++++|++|++.|+.++ |++||+ .+..++++|+||||| +... ..+.++. .||||+++++
T Consensus 110 ~-~~~Ii~~~~~k~~~el~~A~~~g~~i~vds~~EL~~l~~~a~~~~v~lRvnp-~~~~~~~~~i~tg~~~sKFGi~~~~ 187 (418)
T 3n29_A 110 M-DKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQSKTQKNSLGLRCNV-EFSLAPKELYNPCGRYSRLGIRAKD 187 (418)
T ss_dssp T-CSEEEEEESSCCHHHHHHHHHHCSEEEESSHHHHHHHGGGCTTSEEEEEBCC-CCC----------CTTCCSSBCGGG
T ss_pred C-CCCEEEECCCCCHHHHHHHHHcCCeEEECCHHHHHHHHHhcCCCCEEEEEeC-CCCCCCCcccccCCCCCcCcCCHHH
Confidence 5 689999999999999999999998655 999999 666678999999999 6432 2222332 5799999998
Q ss_pred HHHHHHHHHhCCC-cEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc-------------------
Q 048797 79 IGALLEAALASQL-GVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH------------------- 138 (240)
Q Consensus 79 ~~~~l~~a~~~~l-~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld------------------- 138 (240)
+.+. .+ ++.|||||+||| .+++.|.++++.+.++++. .|+ ++++||
T Consensus 188 ~~~~-------~l~~l~Glh~HigSq-~~~~~~~~~~~~~~~~~~~----~g~--~l~~ldiGGGf~i~y~~~~~~~~~~ 253 (418)
T 3n29_A 188 FENV-------DLNAIEGLHFHALCE-ESADALEAVLKVFEEKFGK----WIG--QMKWVNFGGGHHITKKGYDVEKLIA 253 (418)
T ss_dssp GTTC-------CCTTCCEEECCCCSS-BCHHHHHHHHHHHHHHHGG----GTT--TCSEEECCSCBCTTSTTCCHHHHHH
T ss_pred HHHh-------hcCceEEEEEecCCC-CCHHHHHHHHHHHHHHHHH----hCC--CCCEEEeCCCcCCCCCCCCHHHHHH
Confidence 7652 44 789999999999 7999999999988776543 577 888888
Q ss_pred hhHHHHhhhcC---CCC--eeeeCceEEEEe------C---------c----e--------eeeeccCC-----------
Q 048797 139 WRRGRADCHFG---AGP--FPRDSAFTLATR------N---------C----R--------ESSACSNR----------- 175 (240)
Q Consensus 139 ~i~~~l~~~~~---~~p--~lva~a~~l~t~------n---------~----~--------~P~~~~~~----------- 175 (240)
.|++.++++-. -|| |+|++||+|+|+ + . + .|.++...
T Consensus 254 ~i~~~~~~~~~~ii~EPGR~lva~ag~lv~~V~~~K~~~~~~~~vD~g~~~~m~d~~~~~~rp~l~~a~~~~~h~~~~~~ 333 (418)
T 3n29_A 254 LCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKIS 333 (418)
T ss_dssp HHHHHHHHHTCEEEECCSHHHHTTSEEEEEEEEEEEESSSEEEEESSCHHHHSHHHHHTTCCCCBTTEEEEECTTCCBCC
T ss_pred HHHHHHHHcCCEEEEeCCHHhhhhcEEEEEEEEEEEeCCCEEEEECCcccccchhhhccCcCceeecccccccccccccc
Confidence 33444444311 136 999999999999 1 0 0 14433210
Q ss_pred CCCCCeeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCeeEE
Q 048797 176 TCTGMIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTC 237 (240)
Q Consensus 176 ~~~~~~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~~ 237 (240)
....+..+++|+||+|+++|+|.+.. |++++||||+|.+|||||++|+|+||++++|+++++
T Consensus 334 ~~~~~~~~~~v~Gp~C~s~D~l~~~~~~~~l~~GD~l~~~~~GAY~~s~ss~fN~~~~p~~v~v 397 (418)
T 3n29_A 334 DLKENEFAYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLL 397 (418)
T ss_dssp CCCTTCEEEEEECSSSCTTCEEEEEEESSCCCTTCEEEESSCSSSSGGGCCCGGGCCCCEEEEE
T ss_pred CCCCCceEEEEEcCCCCCCCEEeecccCCCCCCCCEEEEeCccchhHHHhccccCCCCCCEEEE
Confidence 01234678999999999999999877 589999999999999999999999999999975543
No 8
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A*
Probab=100.00 E-value=1.5e-39 Score=294.49 Aligned_cols=230 Identities=32% Similarity=0.511 Sum_probs=183.2
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCC-cc--CHHHHc--cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCH
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFD-YA--SQAEIK--GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANL 76 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~-~~--s~~EL~--~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~ 76 (240)
++++|+++++|+|+||+|+++++++|+++|+. +. |++||+ .+..++++|.||||+ +...+..... +|||+++
T Consensus 98 ~~~~G~~~~~iv~~g~~k~~~~l~~a~~~gv~~~~vds~~el~~l~~~~~~~~v~lrid~-g~~~~~~~~~--~RfG~~~ 174 (425)
T 1f3t_A 98 VRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRIST-DDSLARCRLS--VKFGAKV 174 (425)
T ss_dssp HHHTTCCGGGEEECCSSCCHHHHHHHHHTTCCEEEECSHHHHHHHHHHCTTCEEEEEBCC-------------CCSCBCH
T ss_pred HHHcCCChhhEEEcCCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHhCCCCcEEEEEcC-CCCCccCCCC--CcCCCCH
Confidence 46789999999999999999999999999996 43 999999 455567899999999 6443333333 4999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc------------------
Q 048797 77 AEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH------------------ 138 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld------------------ 138 (240)
+++.++++.+++.++++.|+|+|+||+..+++.|.++++.+.++++. .++.|+ +++++|
T Consensus 175 ~~~~~~~~~~~~~~l~~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~-~~~~G~--~~~~l~iGGG~~~~~~~~~~~~~~ 251 (425)
T 1f3t_A 175 EDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSRFVFDM-GTELGF--NMHILDIGGGFPGTRDAPLKFEEI 251 (425)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCCCSCCSCTHHHHHHHHHHHHHHHH-HHHTTC--CCCEEECCCCCCSSTTSSSCHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH-HHHcCC--CCCEEEeCCCcCCCCCCCCCHHHH
Confidence 99999999988889999999999999999999999999988888887 677888 888888
Q ss_pred --hhHHHHhhhcCC--------CC--eeeeCceEEEEe-----C----c-------------e---e---------eeec
Q 048797 139 --WRRGRADCHFGA--------GP--FPRDSAFTLATR-----N----C-------------R---E---------SSAC 172 (240)
Q Consensus 139 --~i~~~l~~~~~~--------~p--~lva~a~~l~t~-----n----~-------------~---~---------P~~~ 172 (240)
.|+..++++++. +| |+++++|+|+++ . . . + |.+.
T Consensus 252 ~~~vr~~i~~~~~~~~~~~l~~EpGR~~v~~a~~l~t~V~~vK~~~~g~~~v~g~~~~~~~~~~~~i~~G~~d~~~~~l~ 331 (425)
T 1f3t_A 252 AGVINNALEKHFPPDLKLTIVAEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCILY 331 (425)
T ss_dssp HHHHHHHHHHHSCCCTTCEEEECCSHHHHGGGEEEEEEEEEEEEC---------------CCEEEEESCCTTTGGGHHHH
T ss_pred HHHHHHHHHHhcCcCCCcEEEEeCCceeeeeeEEEEEEEEEEEeccccccccccccccCcceEEEEEeccccccchhhhh
Confidence 345667777753 35 899999999998 1 0 0 1 1111
Q ss_pred cC---------CC-CCCCeeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCeeEEe
Q 048797 173 SN---------RT-CTGMIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTCL 238 (240)
Q Consensus 173 ~~---------~~-~~~~~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~~i 238 (240)
.. .. ..++..+++|+||+|++.|++..++ |++++||||+|.++|||+++|+++||++++|+ ++|+
T Consensus 332 ~~~~~~~vl~~~~~~~~~~~~~~i~G~~C~s~D~~~~d~~lp~~~~GD~v~~~~~GAY~~s~~s~fn~~~~p~-v~~~ 408 (425)
T 1f3t_A 332 DHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPT-IYYV 408 (425)
T ss_dssp SCCCCCCEECSCCCTTCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCCCGGGCCCCE-EEEE
T ss_pred cccccceeeecCCCCCCCeeEEEEEcCCcCCCCEecccccCCCCCCCCEEEEcCCCCCchhhcccccCCCCCE-EEEE
Confidence 10 00 0123467999999999999999988 89999999999999999999999999999994 5554
No 9
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A*
Probab=100.00 E-value=3.7e-38 Score=280.73 Aligned_cols=228 Identities=29% Similarity=0.436 Sum_probs=183.6
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCC-cc--CHHHHc--cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCH
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFD-YA--SQAEIK--GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANL 76 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~-~~--s~~EL~--~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~ 76 (240)
++++|+++++|+|+||.|++++++.|+++|+. +. |++||+ .+..++.++.|||++ +..++.+.+++ |||+++
T Consensus 77 ~~~~G~~~~~I~~~~~~k~~~~l~~a~~~~v~~~~vds~~~l~~l~~~~~~~~v~lrv~~-~~~~~~~~~~~--R~G~~~ 153 (372)
T 2nva_A 77 VIQIGVSPSRIIFAHTMKTIDDLIFAKDQGVDIATFDSSFELDKIHTYHPNCKMILRIRC-DDPNATVQLGN--KFGANE 153 (372)
T ss_dssp HHHHTCCGGGEEECCSCCCHHHHHHHHHHTCCEEEECSHHHHHHHHHHCTTCEEEEEBCC-CCTTCSBCCTT--TSSBCG
T ss_pred HHHcCCCHHHEEECCCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHhCCCCeEEEEEec-CCCCCcccCCC--CCCCCH
Confidence 45789999999999999999999999999987 33 999999 455566899999999 65444455554 999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc------------------
Q 048797 77 AEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH------------------ 138 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld------------------ 138 (240)
+++.++++.+++.++++.|+|+|.||+..+++.|.++++.+.++++.+ ++.|+ +++++|
T Consensus 154 ~~~~~~~~~~~~~~l~~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l-~~~g~--~~~~~~~GGg~~~~~~~~~~~~~~ 230 (372)
T 2nva_A 154 DEIRHLLEYAKQLDIEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEA-ISVGH--KPYILDIGGGLHADIDEGELSTYM 230 (372)
T ss_dssp GGHHHHHHHHHHTTCCEEEEECCCCBSBCCHHHHHHHHHHHHHHHHHH-HHHTC--CCCEEECCSCBCCCCC---CCCHH
T ss_pred HHHHHHHHHHHHcCCeEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHH-HhcCC--CCcEEEeCCCCCcCCCCCCCHHHH
Confidence 999999998888899999999999999989999999999999998884 44577 666666
Q ss_pred --hhHHHHhhhcCC-------CC--eeeeCceEEEEe-----C---c--e-e---------e----------eeccCCCC
Q 048797 139 --WRRGRADCHFGA-------GP--FPRDSAFTLATR-----N---C--R-E---------S----------SACSNRTC 177 (240)
Q Consensus 139 --~i~~~l~~~~~~-------~p--~lva~a~~l~t~-----n---~--~-~---------P----------~~~~~~~~ 177 (240)
.++..+..|++. +| |+++++++|+++ . . . + | +.......
T Consensus 231 ~~~vr~~i~~y~~~~~~~~~~epGr~~~~~a~~l~t~V~~vk~~~g~~~~~vd~G~~d~~~~~l~~~~~~~~v~~~~~~~ 310 (372)
T 2nva_A 231 SDYINDAIKDFFPEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFEKSVPTPQLLRDVPD 310 (372)
T ss_dssp HHHHHHHHHHHCCCTTCEEEECCSHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTTCTHHHHSCCCCCCEESSCCCT
T ss_pred HHHHHHHHHHhcCcCCCEEEEccChhHhhceEEEEEEEEEEEEeCCcEEEEECCCccccchHhhhcccCccceeccCccC
Confidence 344556666653 25 899999999998 0 0 0 0 1 22111001
Q ss_pred CCCeeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCee
Q 048797 178 TGMIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADIP 235 (240)
Q Consensus 178 ~~~~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v 235 (240)
.++..+++|+|++|++.|++..++ |++++||+|+|.++|||+++|+++||++++|+++
T Consensus 311 ~g~~~~~~i~G~~C~~~D~~~~d~~lp~~~~GD~v~~~~~GAY~~~~~~~fn~~~~p~~~ 370 (372)
T 2nva_A 311 DEEYVPSVLYGCTCDGVDVINHNVALPELHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVY 370 (372)
T ss_dssp TCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEESSCCSSSGGGCCCGGGCCCEEEE
T ss_pred CCCcceEEEEeCCcCCCCEEcccccCCCCCCCCEEEEcCCCCCchhhhccccCCCCCcEE
Confidence 133478999999999999999888 8999999999999999999999999999999644
No 10
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=100.00 E-value=3.2e-38 Score=285.93 Aligned_cols=233 Identities=15% Similarity=0.121 Sum_probs=181.9
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCC-cc--CHHHHc------cccCCCCcEEEEEeeCCCC--CCcccCC-CC
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFD-YA--SQAEIK------GKWHPRCDLLIRIKALDDC--KAVCPQA-QD 69 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~-~~--s~~EL~------~~~~~~~~v~lRi~~~~~~--~~~~~~~-~~ 69 (240)
++++|+++++|+|.||.|+++++++|+++|+. +. |++||+ .+.++.++|+||||+ +.. +..+.++ ..
T Consensus 78 ~~~~G~~~~~I~~~g~~k~~~~i~~a~~~~v~~~~vds~~el~~l~~~a~~~~~~~~V~lrvn~-g~~~~~~~~~~~~~~ 156 (428)
T 2j66_A 78 ARHAGFSAENIIFSGPGKKRSELEIAVQSGIYCIIAESVEELFYIEELAEKENKTARVAIRINP-DKSFGSTAIKMGGVP 156 (428)
T ss_dssp HHHTTCCGGGEEECCSCCCHHHHHHHHHHTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEEC-SSCC--CCCSSSCCC
T ss_pred HHHcCCCcCeEEEeCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHhhCCCceEEEEEcC-CCCCCCCccccCCCC
Confidence 56789999999999999999999999999984 33 999998 234567899999999 532 2223332 25
Q ss_pred CCCCCCHHHHHHHHHHHHhC-CCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc----------
Q 048797 70 SKCGANLAEIGALLEAALAS-QLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH---------- 138 (240)
Q Consensus 70 skFG~~~~~~~~~l~~a~~~-~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld---------- 138 (240)
||||++++++.++++.++++ ++++.|||+|+||+..+++.|.++++.+.++++.+.++.|+ ++++||
T Consensus 157 srfG~~~~e~~~~~~~~~~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~--~~~~l~~GGG~~i~y~ 234 (428)
T 2j66_A 157 RQFGMDESMLDAVMDAVRSLQFTKFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGI--VCECINLGGGFGVPYF 234 (428)
T ss_dssp CSSSEEGGGHHHHHHHHHHCTTEEEEEEECCCCSCBCCHHHHHHHHHHHHHHHHHHHHHHCC--CCSEEECCCCBCCCCC
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC--CCCEEEeCCCcCcCCC
Confidence 79999999999999998887 89999999999999999999999999999999886566688 888888
Q ss_pred -------------hhHHHHhhhcC----C-----CC--eeeeCceEEEEe-------------------Ccee-eee---
Q 048797 139 -------------WRRGRADCHFG----A-----GP--FPRDSAFTLATR-------------------NCRE-SSA--- 171 (240)
Q Consensus 139 -------------~i~~~l~~~~~----~-----~p--~lva~a~~l~t~-------------------n~~~-P~~--- 171 (240)
.|+..+..+++ . +| |++++||+|+++ +..+ |..
T Consensus 235 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~EpGr~~~~~ag~l~t~V~~vK~~~g~~~~~~d~g~~~~~~~~~~~~ 314 (428)
T 2j66_A 235 SHEKALDIGKITRTVSDYVQEARDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEVFVIVDGGMHHHAASTFRGR 314 (428)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHTTTCTTCEEEEEESHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTCTTC-----
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHhhceEEEEEEEEEEecCCcEEEEECCccccchhhhccch
Confidence 23444554432 1 14 899999999998 1111 443
Q ss_pred -ccCC---------C--CCCCeeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCC-CCCCCCCCCeeE
Q 048797 172 -CSNR---------T--CTGMIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGS-GFKGFNTADIPT 236 (240)
Q Consensus 172 -~~~~---------~--~~~~~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~-~Fn~~~~p~~v~ 236 (240)
+... . ...+..+++|+||+|+++|++..++ |++++||+|+|.++|||+++|++ +||++++|++++
T Consensus 315 ~y~~~~~~~~~~~~~~~~~~~~~~~~i~G~~C~s~D~l~~d~~lp~~~~GD~l~~~~~GAY~~~~~s~~fn~~~~p~~v~ 394 (428)
T 2j66_A 315 SMRSNYPMEYIPVREDSGRRELEKVTIAGPLCTPEDCLGKDVHVPALYPGDLVCVLNSGAYGLSFSPVHFLGHPTPIEIL 394 (428)
T ss_dssp ------CEEEEC---------CEEEEEECSSSSTTCEEEEEEEESCCCTTCEEEESSCSSSSGGGSCTTGGGCCCCEEEE
T ss_pred hccCcCcEEeecccCCCCCCCCceEEEEcCCCCCCcEEEecccCCCCCCCCEEEEeCCCcchHHhhhhhhhCCCCCeEEE
Confidence 2110 0 0112467999999999999999988 89999999999999999999996 999999997554
Q ss_pred E
Q 048797 237 C 237 (240)
Q Consensus 237 ~ 237 (240)
+
T Consensus 395 ~ 395 (428)
T 2j66_A 395 K 395 (428)
T ss_dssp E
T ss_pred E
Confidence 3
No 11
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A*
Probab=100.00 E-value=1.4e-37 Score=281.63 Aligned_cols=228 Identities=20% Similarity=0.256 Sum_probs=177.6
Q ss_pred cccCCCCC----CcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc--cccCCCCcEEEEEeeCCCC---CCcccCCC-C
Q 048797 2 LNALGVSG----KSVSLTVALRNENGLAEALGSNFDYA--SQAEIK--GKWHPRCDLLIRIKALDDC---KAVCPQAQ-D 69 (240)
Q Consensus 2 al~~G~~~----~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~--~~~~~~~~v~lRi~~~~~~---~~~~~~~~-~ 69 (240)
++++|+++ ++|+|+||+|++++++.|+++|+.++ |++||+ .+..++.++.||||| +.. +..+.++. .
T Consensus 83 ~~~~G~~~~~~~~~Iv~~g~~k~~~~l~~a~~~~i~~~vds~~el~~l~~~a~~~~v~lRv~~-~~~~~~h~~i~tG~~~ 161 (425)
T 1knw_A 83 ALAAGYNPQTHPDDIVFTADVIDQATLERVSELQIPVNAGSVDMLDQLGQVSPGHRVWLRVNP-GFGHGHSQKTNTGGEN 161 (425)
T ss_dssp HHHTTCCTTTCTTSEEEEESCCCHHHHHHHHHHTCCEEESSHHHHHHHHHHSTTCEEEEEEEC-SCCSSCTTSCCSSSTT
T ss_pred HHHcCCCCCCCcCeEEEECCCCCHHHHHHHHHcCCEEEECCHHHHHHHHHhhhhccEEEEECC-CCCCCCCcccccCCCC
Confidence 56789999 99999999999999999999999865 999999 455556799999999 532 33444442 4
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc-----------
Q 048797 70 SKCGANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH----------- 138 (240)
Q Consensus 70 skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld----------- 138 (240)
||||++++++.++++.+++.++++.|+|||+||+. +++.|.++++.+.++++. +|+ ++++||
T Consensus 162 ~RfG~~~~~~~~~~~~~~~~~l~l~Gl~~H~gs~~-~~~~~~~~~~~~~~~~~~----~G~--~~~~ln~GGG~~~~y~~ 234 (425)
T 1knw_A 162 SKHGIWYTDLPAALDVIQRHHLQLVGIHMHIGSGV-DYAHLEQVCGAMVRQVIE----FGQ--DLQAISAGGGLSVPYQQ 234 (425)
T ss_dssp CCCSEEGGGHHHHHHHHHHTTCEEEEEECCCCCTT-CHHHHHHHHHHHHHHHHH----HTC--CCSEEECCCCCCCCCST
T ss_pred CCCcCCHHHHHHHHHHHHHCCCCEEEEEEECCCCC-CHHHHHHHHHHHHHHHHH----hCC--CCcEEEeCCCcccCCCC
Confidence 69999999999999988888999999999999999 999999998887666655 477 777777
Q ss_pred --------hh-------HHHHhhhc--CC----CC--eeeeCceEEEEe-------------------Ccee-eeeccCC
Q 048797 139 --------WR-------RGRADCHF--GA----GP--FPRDSAFTLATR-------------------NCRE-SSACSNR 175 (240)
Q Consensus 139 --------~i-------~~~l~~~~--~~----~p--~lva~a~~l~t~-------------------n~~~-P~~~~~~ 175 (240)
.+ .+.+...+ +. +| |++++||+|+++ +..+ |.++...
T Consensus 235 ~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~EpGr~~v~~ag~l~t~V~~vk~~~~~~~~~vd~G~~d~~~~~l~~~~ 314 (425)
T 1knw_A 235 GEEAVDTEHYYGLWNAAREQIARHLGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSY 314 (425)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHHHHHTSCCEEEECCSHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTSCHHHHHCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCCCEEEEcCChHHhhhceEEEEEEEEEEecCCcEEEEECCchhhccchhhhccc
Confidence 01 11222111 21 35 999999999999 0111 2222110
Q ss_pred --------CCC----CCeeeEEEeccCcCCCcccccC-------C--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCe
Q 048797 176 --------TCT----GMIYNSTVFGPTLDAYDKLFTG-------H--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADI 234 (240)
Q Consensus 176 --------~~~----~~~~~~~i~G~~C~~~D~l~~~-------~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~ 234 (240)
... .+..+++|+||+|+++|++..+ + |++++||||+|.++|||+++|+++||++++|++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~v~G~~C~s~D~~~~d~~~~~~~~~lp~~~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~ 394 (425)
T 1knw_A 315 HHISALAADGRSLEHAPTVETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPE 394 (425)
T ss_dssp CCEEEECTTCCCCTTCCEEEEEEECSSSSTTCBSSBCTTSCBCCEEEECCCTTCEEEEESCSSSSGGGCCCTTTCCCCCE
T ss_pred ceeEecCCCCCccccCCceeEEEECCCCCCCCEEeecCCCCccceeCCCCCCCCEEEEeCCCcchHHHHhHhhCCCCCeE
Confidence 011 1136899999999999999998 6 899999999999999999999999999999986
Q ss_pred eEE
Q 048797 235 PTC 237 (240)
Q Consensus 235 v~~ 237 (240)
+++
T Consensus 395 v~~ 397 (425)
T 1knw_A 395 VLF 397 (425)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 12
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A*
Probab=100.00 E-value=2.1e-37 Score=279.94 Aligned_cols=228 Identities=20% Similarity=0.308 Sum_probs=179.3
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCC-cc--CHHHHc--cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCH
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFD-YA--SQAEIK--GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANL 76 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~-~~--s~~EL~--~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~ 76 (240)
++++|+++++|+|.||.|++++++.|+++|+. +. |++||+ .+..++++|.||||+ +..++.+.+.+ |||+++
T Consensus 115 ~r~~G~~~~~Il~~g~~k~~~~l~~a~~~~v~~~~vds~~el~~l~~~a~~~~v~lrvd~-g~~~~~~~~~~--RfG~~~ 191 (419)
T 2plj_A 115 VASEGVPADLTIHTHPIKRDADIRDALAYGCNVFVVDNLNELEKFKAYRDDVELLVRLSF-RNSEAFADLSK--KFGCSP 191 (419)
T ss_dssp HHHTTCCGGGEEECCSSCCHHHHHHHHHHTCCEEEECSHHHHHTTGGGTTTCEEEEEBCC----------CC--CSCBCH
T ss_pred HHHcCCChhhEEEeCCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHhcCCCCEEEEEcC-CCCCCCCCCCC--CCcCCH
Confidence 46789999999999999999999999999987 44 999999 555567899999999 64444444444 999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc------------------
Q 048797 77 AEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH------------------ 138 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld------------------ 138 (240)
+++.++++.+++.++++.|+|+|+||+..+++.|.++++.+.++++. .++.|+ |+++++|
T Consensus 192 ~e~~~~~~~~~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~-l~~~G~-~~~~~l~~GGG~~~~y~~~~~~~~~ 269 (419)
T 2plj_A 192 EQALVIIETAKEWNIRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQ-VVERGL-PALSTLDIGGGFPVNYTQQVMPIDQ 269 (419)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCCCTTCCCTHHHHHHHHHHHHHHHH-HHHTTC-CCCCEEECCCCCCCCSSSCCCCHHH
T ss_pred HHHHHHHHHHHhCCCcEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH-HHhcCC-CCCCEEEECCCcCcCCCCCCCCHHH
Confidence 99999999988889999999999999999999999999999999988 455566 3566666
Q ss_pred ---hhHHHHhhhcCC------CC--eeeeCceEEEEe-----C--c--e--e------------------eeeccCCCCC
Q 048797 139 ---WRRGRADCHFGA------GP--FPRDSAFTLATR-----N--C--R--E------------------SSACSNRTCT 178 (240)
Q Consensus 139 ---~i~~~l~~~~~~------~p--~lva~a~~l~t~-----n--~--~--~------------------P~~~~~~~~~ 178 (240)
.++..+.. ++. +| |+++++++|+++ . . + + |+...+ ..
T Consensus 270 ~~~~vr~~i~~-y~~~~~~~~EpGr~~~~~a~~l~t~V~~vk~~~g~~~~~vd~G~~d~~~~~l~~~~~~~v~~~~--~~ 346 (419)
T 2plj_A 270 FCAPINEALSL-LPETVHVLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMFDDARYPLTTIK--QG 346 (419)
T ss_dssp HHHHHHHHHTT-SCTTCEEEECCCHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTGGGHHHHSCCCCCEEESC--CS
T ss_pred HHHHHHHHHHh-CCCCCEEEEcCCHHHhhhcEEEEEEEEEEEeECCeEEEEEcCccccchHHHHhccccceEEecC--CC
Confidence 23444554 442 35 899999999998 0 0 0 0 121111 11
Q ss_pred CCeeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCeeEE
Q 048797 179 GMIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTC 237 (240)
Q Consensus 179 ~~~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~~ 237 (240)
++..+++|+||+|++.|++..++ |++++||+|+|.++|||+++|+++||++++|+++++
T Consensus 347 ~~~~~~~i~G~~C~s~D~~~~d~~lp~~~~GD~v~~~~~GAY~~~~~s~fn~~~~p~~v~~ 407 (419)
T 2plj_A 347 GELIPSVLSGPTCDSVDVIAENILLPKLNNGDLVIGRTMGAYTSATATDFNFFKRAQTIAL 407 (419)
T ss_dssp SCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEESSCSSSSGGGCBCGGGCCCCEEEEE
T ss_pred CCceeEEEEcCCcCCCCeeeecccCCCCCCCCEEEEeCCCCchhhhhhhhcCCCCCeEEEE
Confidence 23578999999999999999888 899999999999999999999999999999975554
No 13
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A
Probab=100.00 E-value=1.1e-38 Score=292.14 Aligned_cols=233 Identities=15% Similarity=0.171 Sum_probs=181.9
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCC-cc--CHHHHc--c----ccCCCCcEEEEEeeCCCC---CCcccCCC-
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFD-YA--SQAEIK--G----KWHPRCDLLIRIKALDDC---KAVCPQAQ- 68 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~-~~--s~~EL~--~----~~~~~~~v~lRi~~~~~~---~~~~~~~~- 68 (240)
++++|++|++|+|+||.|+++++++|+++|+. +. |++||+ . +.++.++|+||||+ +.. +..+..+.
T Consensus 103 ~~~~G~~~~~I~~~g~~k~~~~i~~a~~~gv~~i~vds~~el~~l~~~a~~~~~~~~v~lrvn~-g~~~~~~~~~~~~~~ 181 (467)
T 2o0t_A 103 ALHASFPPERITLHGNNKSVSELTAAVKAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLVRLTV-GVEAHTHEFISTAHE 181 (467)
T ss_dssp HHHTTCCGGGEEECCTTCCHHHHHHHHHHTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEEC-SEEEEETEEEEESSC
T ss_pred HHHcCCCcccEEEeCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHhhCCCCeEEEEEcC-CCCCCCCcccccCCC
Confidence 56789999999999999999999999999984 33 999999 2 34567899999999 521 12222222
Q ss_pred CCCCCCCH--HHHHHHHHHHHhC-CCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCC----CCCCCCccc---
Q 048797 69 DSKCGANL--AEIGALLEAALAS-QLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHG----LTDQMRAKH--- 138 (240)
Q Consensus 69 ~skFG~~~--~~~~~~l~~a~~~-~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g----~~~~~~~ld--- 138 (240)
.||||+++ +++.++++.+++. ++++.|||||+||+..+++.|.++++.+.++++.+.++.| + ++++||
T Consensus 182 ~srfG~~~~~~e~~~~~~~~~~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~--~~~~ln~GG 259 (467)
T 2o0t_A 182 DQKFGLSVASGAAMAAVRRVFATDHLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPEKTA--QIATVDLGG 259 (467)
T ss_dssp CSSSSEETTTTHHHHHHHHHHHCSSEEEEEEECCCEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHST--TCCEEECCC
T ss_pred CCCcCCcCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccc--CCCEEEeCC
Confidence 56999997 5899999988776 8999999999999999999999999999999988655667 7 777777
Q ss_pred --------------------hhHHHHhhhc-----CC-----CC--eeeeCceEEEEe------C-----c----e-e--
Q 048797 139 --------------------WRRGRADCHF-----GA-----GP--FPRDSAFTLATR------N-----C----R-E-- 168 (240)
Q Consensus 139 --------------------~i~~~l~~~~-----~~-----~p--~lva~a~~l~t~------n-----~----~-~-- 168 (240)
.|+..+++++ +. +| |++++||+|+++ + . + +
T Consensus 260 G~~i~y~~~~~~~~~~~~~~~v~~~i~~~~~~~g~~~~~l~~EpGR~~v~~ag~l~t~V~~vK~~~~g~~~~~~~~~vd~ 339 (467)
T 2o0t_A 260 GLGISYLPSDDPPPIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDVSATAHRRYVSVDG 339 (467)
T ss_dssp CBCCCSSTTCCCCCHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCSHHHHSTTEEEEEEEEEEEEEECSSSCEEEEEEESC
T ss_pred CcCcCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEeccchheeccceEEEEEEEEEeecccCCCCccEEEEEcC
Confidence 2444455332 11 35 999999999998 1 0 0 0
Q ss_pred -------eeeccC--------CCCCCCeeeEEEeccCcCCCcccccCC--C-CCCCCCEEEEcCCCccccccCCCCCCCC
Q 048797 169 -------SSACSN--------RTCTGMIYNSTVFGPTLDAYDKLFTGH--P-ELQVGNWLVFSQIGACTAVYGSGFKGFN 230 (240)
Q Consensus 169 -------P~~~~~--------~~~~~~~~~~~i~G~~C~~~D~l~~~~--p-~l~~GD~l~~~~~GAY~~~~s~~Fn~~~ 230 (240)
|..+.. +....+..+++|+||+|+++|++..++ | ++++||+|+|.++|||+++|+++||+++
T Consensus 340 g~~~~~~p~~y~~~~~~~~~~~~~~~~~~~~~v~G~~C~s~D~~~~d~~lp~~l~~GD~l~~~~~GAY~~~~~s~fn~~~ 419 (467)
T 2o0t_A 340 GMSDNIRTALYGAQYDVRLVSRVSDAPPVPARLVGKHCESGDIIVRDTWVPDDIRPGDLVAVAATGAYCYSLSSRYNMVG 419 (467)
T ss_dssp CTTTCCHHHHHCCCCCEEECSSCCCSCEEEEEEECSSSSTTCEEEEEEEEETTCCTTCEEEESCCSSSSSTTCBCGGGCC
T ss_pred ccccccchHHhCCcCceEecCCCCCCCceeEEEECCCcCCCCEEEeccccCCCCCCCCEEEEcCCCcchHHHhhHhhCCC
Confidence 222211 111223578999999999999999887 8 9999999999999999999999999999
Q ss_pred CCCeeEE
Q 048797 231 TADIPTC 237 (240)
Q Consensus 231 ~p~~v~~ 237 (240)
+|+++++
T Consensus 420 ~p~~v~v 426 (467)
T 2o0t_A 420 RPAVVAV 426 (467)
T ss_dssp CCEEEEE
T ss_pred CCcEEEE
Confidence 9975543
No 14
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=100.00 E-value=1.9e-37 Score=280.73 Aligned_cols=232 Identities=19% Similarity=0.157 Sum_probs=181.8
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCC-cc--CHHHHc------cccCCCCcEEEEEeeCCCC---CCcccCCC-
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFD-YA--SQAEIK------GKWHPRCDLLIRIKALDDC---KAVCPQAQ- 68 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~-~~--s~~EL~------~~~~~~~~v~lRi~~~~~~---~~~~~~~~- 68 (240)
++++|+++++|+|+||+|+++++++|+++|+. +. |++||+ .+.++.++|+||||+ +.. ++.+.++.
T Consensus 95 ~~~~G~~~~~i~~~g~~k~~~~i~~a~~~gv~~i~vds~~el~~l~~~a~~~~~~~~v~lrvn~-g~~~~~~~~~~tg~~ 173 (425)
T 2qgh_A 95 ALKAGIKPYRIVFSGVGKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKARISIRINP-NIDAKTHPYISTGLK 173 (425)
T ss_dssp HHHTTCCGGGEEECCTTCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCC-CCCCCSCGGGBCCST
T ss_pred HHHcCCChhHEEEcCCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHHHHhcCCCceEEEEEeC-CCCCCCCcccccCCC
Confidence 46789999999999999999999999999986 33 999998 234567899999999 532 33444442
Q ss_pred CCCCCCCHHHHHHHHHHHHhC-CCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc---h-----
Q 048797 69 DSKCGANLAEIGALLEAALAS-QLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH---W----- 139 (240)
Q Consensus 69 ~skFG~~~~~~~~~l~~a~~~-~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld---~----- 139 (240)
.||||++++++.++++.++++ ++++.|||+|+||+..+++.+.++++.+.++++.+. +.|+ ++++|| .
T Consensus 174 ~sRfG~~~~e~~~l~~~~~~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~-~~g~--~~~~l~~GGG~~i~y 250 (425)
T 2qgh_A 174 ENKFGVGEKEALEMFLWAKKSAFLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLI-ALGI--DLRFFDVGGGIGVSY 250 (425)
T ss_dssp TSSSSBCHHHHHHHHHHHHHCSSEEEEEEECCCBSSBCCHHHHHHHHHHHHHHHHHHH-HTTC--CCCEEECCCCBCCCT
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCccEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH-hcCC--CCCEEEECCCcCcCC
Confidence 569999999999999998887 899999999999999899999999999999999844 4688 888888 1
Q ss_pred --------------hHHHHhhhcCC---CC--eeeeCceEEEEe-------------------Ccee-eeeccCC-----
Q 048797 140 --------------RRGRADCHFGA---GP--FPRDSAFTLATR-------------------NCRE-SSACSNR----- 175 (240)
Q Consensus 140 --------------i~~~l~~~~~~---~p--~lva~a~~l~t~-------------------n~~~-P~~~~~~----- 175 (240)
++..+..+-+. +| |++++||+|+++ +..+ |.++...
T Consensus 251 ~~~~~~~~~~~~~~v~~~i~~~~~~~~~EpGr~~~~~a~~l~t~V~~vk~~~~~~~~~vd~G~~d~~~~~l~~~~~~~~~ 330 (425)
T 2qgh_A 251 ENEETIKLYDYAQGILNALQGLDLTIICEPGRSIVAESGELITQVLYEKKAQNKRFVIVDAGMNDFLRPSLYHAKHAIRV 330 (425)
T ss_dssp TSCCCCCHHHHHHHHHHHTTTCCCEEEECCCHHHHTTTEEEEEEEEEEEC--CCCEEEESCCTTTCCHHHHHCCCCCEEE
T ss_pred CCCCCCCHHHHHHHHHHHHhhcCCEEEEcCchhhhhcceEEEEEEEEEEecCCCEEEEEcCchhcccchhhcCCcceeee
Confidence 22223322111 24 899999999999 0111 2222111
Q ss_pred -CC-CCC-eeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCeeEE
Q 048797 176 -TC-TGM-IYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTC 237 (240)
Q Consensus 176 -~~-~~~-~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~~ 237 (240)
.. .++ ..+++|+||+|+++|++..++ |++++||+|+|.++|||+++|+++||++++|+++++
T Consensus 331 ~~~~~~~~~~~~~i~G~~C~s~D~~~~d~~lp~~~~GD~v~~~~~GAY~~~~~s~fn~~~~p~~v~~ 397 (425)
T 2qgh_A 331 ITPSKGREISPCDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELAL 397 (425)
T ss_dssp CSCC---CCEEEEEECSSSSTTCEEEEEEEECCCCTTCEEEECSCSSSSGGGCCCTTTCCCCEEEEE
T ss_pred ccCCCCCcceEEEEECCCcCCCcEecccccCCCCCCCCEEEEeCCCCchhhhhccccCCCCCeEEEE
Confidence 00 111 467999999999999999988 899999999999999999999999999999976543
No 15
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Probab=100.00 E-value=1.8e-36 Score=274.99 Aligned_cols=231 Identities=14% Similarity=0.142 Sum_probs=182.2
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCC-cc--CHHHHc------cccCCCCcEEEEEeeCCCC---CCcccCCC-
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFD-YA--SQAEIK------GKWHPRCDLLIRIKALDDC---KAVCPQAQ- 68 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~-~~--s~~EL~------~~~~~~~~v~lRi~~~~~~---~~~~~~~~- 68 (240)
++++|+++++|+|.||.|++++++.|+++|+. +. |++||+ .+.++.++|+||||+ +.. +..+.++.
T Consensus 98 ~~~~G~~~~~I~~~g~~k~~~~i~~a~~~~i~~~~vds~~el~~l~~~a~~~~~~~~v~lrvn~-g~~~~~~~~~~tG~~ 176 (434)
T 1twi_A 98 AKLSNVPSKKIVFNGNCKTKEEIIMGIEANIRAFNVDSISELILINETAKELGETANVAFRINP-NVNPKTHPKISTGLK 176 (434)
T ss_dssp HHHTTCCGGGEEECCSSCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEEC-CCCTTTCHHHHHHHH
T ss_pred HHHCCCCCCcEEEECCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEECC-CCCCCCCcccccCCC
Confidence 45689999999999999999999999999984 33 999998 234677899999999 532 11122221
Q ss_pred CCCCCCCHHH--HHHHHHHHHhC-CCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc-------
Q 048797 69 DSKCGANLAE--IGALLEAALAS-QLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH------- 138 (240)
Q Consensus 69 ~skFG~~~~~--~~~~l~~a~~~-~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld------- 138 (240)
.||||+++++ +.++++.++++ ++++.|||+|+||+..+++.|.++++.+.++++.+.+ .|+ ++++||
T Consensus 177 ~~rfG~~~~~~~~~~~~~~~~~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~-~g~--~~~~l~~GGg~~~ 253 (434)
T 1twi_A 177 KNKFGLDVESGIAMKAIKMALEMEYVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKE-EGI--EIEDVNLGGGLGI 253 (434)
T ss_dssp HSSCSEESTTSHHHHHHHHHHHCSSEEEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHHHH-TTC--CCSEEECCCCBCC
T ss_pred CCCccCChhhhHHHHHHHHHHhCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHh-cCC--CCCEEEECCCcCc
Confidence 3599999998 99999988887 8999999999999999999999999999999998544 488 788777
Q ss_pred ----------------hhHHHHhhhcC----C----CC--eeeeCceEEEEe------C-------------cee-eeec
Q 048797 139 ----------------WRRGRADCHFG----A----GP--FPRDSAFTLATR------N-------------CRE-SSAC 172 (240)
Q Consensus 139 ----------------~i~~~l~~~~~----~----~p--~lva~a~~l~t~------n-------------~~~-P~~~ 172 (240)
.|+..+.++++ . +| |+++++|+|+++ . ..+ |.++
T Consensus 254 ~y~~~~~~~~~~~~~~~i~~~i~~~~~~~g~~~~~~EpGr~~~~~a~~l~~~V~~vk~~~g~~~~~vd~G~~d~~~~~l~ 333 (434)
T 1twi_A 254 PYYKDKQIPTQKDLADAIINTMLKYKDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMY 333 (434)
T ss_dssp CSSSSSCCCCHHHHHHHHHHHHHTTTTTSCCCEEEECCSHHHHGGGEEEEEEEEEEEECSSCEEEEESCCTTTCCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCeEEEEccChHhhhhceEEEEEEEEEEecCCcEEEEEcCchhcccchHHh
Confidence 24456666542 1 24 899999999999 0 000 2222
Q ss_pred cCCC-------CCCCeeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCeeEE
Q 048797 173 SNRT-------CTGMIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTC 237 (240)
Q Consensus 173 ~~~~-------~~~~~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~~ 237 (240)
.... ..++ .+++|+||+|+++|++..++ |++++||+|+|.++|||+++|+|+||++++|+++++
T Consensus 334 ~~~~~~~~~~~~~~~-~~~~i~G~~C~s~D~~~~d~~lp~~~~GD~v~~~~~GAY~~~~~s~fn~~~~p~~v~~ 406 (434)
T 1twi_A 334 EAYHHIINCKVKNEK-EVVSIAGGLCESSDVFGRDRELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLT 406 (434)
T ss_dssp CCCCCEEESBCCSCE-EEEEEECSSSCTTCEEEEEEEEECCCTTCEEEEECCSSSSGGGCBCTTTCCCCEEEEE
T ss_pred cccceeEecCCCCCC-ceEEEECCCCCCCCEEeeccCCCCCCCCCEEEEeCCCcchHhhhhhhhCCCCCeEEEE
Confidence 1100 0122 67999999999999999988 899999999999999999999999999999976543
No 16
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima}
Probab=100.00 E-value=2.9e-35 Score=263.29 Aligned_cols=230 Identities=15% Similarity=0.159 Sum_probs=173.6
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCC-cc--CHHHHc--cccCC-CCcEEEEEeeCCCC---CCcccCCC-CCC
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFD-YA--SQAEIK--GKWHP-RCDLLIRIKALDDC---KAVCPQAQ-DSK 71 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~-~~--s~~EL~--~~~~~-~~~v~lRi~~~~~~---~~~~~~~~-~sk 71 (240)
++++|+++++|+|.||+|++++++.|+++|+. +. |++||+ .+..+ ++++.||||+ +.. +..+.++. .+|
T Consensus 75 ~~~~G~~~~~Il~~~~~k~~~~l~~a~~~~v~~~~vds~~el~~l~~~a~~~~~v~lrv~~-~~~~~~h~~i~tG~~~~R 153 (386)
T 2yxx_A 75 AKLAGVPSHTVVWNGNGKSRDQMEHFLREDVRIVNVDSFEEMEIWRELNPEGVEYFIRVNP-EVDAKTHPHISTGLKKHK 153 (386)
T ss_dssp HHHTTCCGGGEEECCSCCCHHHHHHHHHTTCCEEEECCHHHHHHHHHHCCTTCEEEEEEEC-CCCTTTSHHHHHHHHHSS
T ss_pred HHHcCCChhhEEEeCCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHhcCcCCeEEEEECC-CCCCCCCcccccCCCCCC
Confidence 46789999999999999999999999999994 44 999999 44444 5899999999 532 21222221 359
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHH--H--H-hCCCCCCCCc----------
Q 048797 72 CGANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAA--S--A-RHGLTDQMRA---------- 136 (240)
Q Consensus 72 FG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l--~--~-~~g~~~~~~~---------- 136 (240)
||+++++ .++++ ++..++++.|+|+|.||+..+++.|.++++.+.++++.+ . . .-|+ ...+
T Consensus 154 fG~~~~~-~~~~~-~~~~~l~~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~~n~GGG~--~~~~~~~~~~~~~~ 229 (386)
T 2yxx_A 154 FGIPLED-LDSFM-ERFRSMNIRGLHVHIGSQITRVEPFVEAFSKVVRASERYGFEEINIGGGW--GINYSGEELDLSSY 229 (386)
T ss_dssp SSEEGGG-HHHHH-HHHTTSCEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHHTCSEEECCCCB--CCCSSSCCCCHHHH
T ss_pred CCCChhH-HHHHh-hccCCCcEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEECCCc--CcCCCCCCCCHHHH
Confidence 9999999 88888 666799999999999999988999999999888888774 0 1 1233 2222
Q ss_pred cchhHHHHhhhcC---CCC--eeeeCceEEEEe-----C---c---ee---------eeeccCCC------CCCCeeeEE
Q 048797 137 KHWRRGRADCHFG---AGP--FPRDSAFTLATR-----N---C---RE---------SSACSNRT------CTGMIYNST 185 (240)
Q Consensus 137 ld~i~~~l~~~~~---~~p--~lva~a~~l~t~-----n---~---~~---------P~~~~~~~------~~~~~~~~~ 185 (240)
.|.++..+..| + -+| |+++++++|+++ . . ++ |.++.... ..++.+++.
T Consensus 230 ~~~vr~~i~~y-~~~~~epGr~~~~~a~~l~t~V~~vk~~~g~~~~~vd~G~~d~~~~~l~~~~~~~~~i~~~~~~~~~~ 308 (386)
T 2yxx_A 230 REKVVPDLKRF-KRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVLGKQGKEMRAD 308 (386)
T ss_dssp HHHTGGGGTTC-SEEEEEECHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTCCHHHHTCCCCCEEETTCCCCSEEEE
T ss_pred HHHHHHHHHhC-CeEEecCcceeeccccEEEEEEEEEEecCCcEEEEEeCccccccchHHhcccCceEeccCCCCceEEE
Confidence 22455555554 3 134 889999999998 0 0 00 22111100 011156799
Q ss_pred EeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCeeEE
Q 048797 186 VFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTC 237 (240)
Q Consensus 186 i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~~ 237 (240)
|+||+|+++|++..++ |++++||+|+|.++|||+++|+++||++++|+++++
T Consensus 309 i~G~~C~~~D~~~~d~~lp~~~~GD~v~~~~~GAY~~~~~s~fn~~~~p~~~~~ 362 (386)
T 2yxx_A 309 VVGPLCESGDVIAYDRELPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLV 362 (386)
T ss_dssp EECSSSSTTCEEEEEEEESCCCTTCEEEESSCSSSSGGGCCCTTTCCCCEEEEE
T ss_pred EEcCCCCCCCEEeeccccCCCCCCCEEEEeCCCCchHHHhhhhhCCCCCcEEEE
Confidence 9999999999999988 899999999999999999999999999999976654
No 17
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus}
Probab=100.00 E-value=2.5e-34 Score=259.71 Aligned_cols=232 Identities=20% Similarity=0.233 Sum_probs=172.6
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCC-cc--CHHHHc--c----ccCCCCcEEEEEeeCCCC---CCcccCCC-
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFD-YA--SQAEIK--G----KWHPRCDLLIRIKALDDC---KAVCPQAQ- 68 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~-~~--s~~EL~--~----~~~~~~~v~lRi~~~~~~---~~~~~~~~- 68 (240)
++++|+++++|+|.||.|++++++.|+++|+. +. |++||+ . +.++.++|+||||| +.. +..+..+.
T Consensus 94 ~~~~G~~~~~Il~~g~~~~~~~l~~a~~~~i~~~~vds~~~l~~l~~~a~~~~~~~~v~lRvn~-~~~~~~~~~idtG~~ 172 (420)
T 2p3e_A 94 AKKAGIPPERIVYAGVGKTEKELTDAVDSEILMFNVESRQELDVLNEIAGKLGKKARIAIRVNP-DVDPKTHPYIATGMQ 172 (420)
T ss_dssp HHHTTCCGGGEEECSSCCCHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHTCCEEEEEEEEC----------------
T ss_pred HHHcCCChhHEEEeCCCCCHHHHHHHHHcCCCEEEeCCHHHHHHHHHHHHhcCCCCcEEEEECC-CCCCCCCcccccCCC
Confidence 45689999999999999999999999999995 44 999998 2 35677899999999 542 22333332
Q ss_pred CCCCCCCHHHHHHHHHHHHhC-CCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc-----h---
Q 048797 69 DSKCGANLAEIGALLEAALAS-QLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH-----W--- 139 (240)
Q Consensus 69 ~skFG~~~~~~~~~l~~a~~~-~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld-----~--- 139 (240)
.+|||++++++.++++.++++ ++++.|+|+|.||+..+.+.+.++++.+.++++.+ ++.|+ +++++| .
T Consensus 173 ~~R~G~~~~e~~~~~~~~~~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l-~~~g~--~~~~l~~Ggg~~~~~ 249 (420)
T 2p3e_A 173 KSKFGVDIREAQKEYEYASKLENLEIVGIHCHIGSQILDISPYREAVEKVVSLYESL-TQKGF--DIKYLDIGGGLGIKY 249 (420)
T ss_dssp -CCSCEEGGGHHHHHHHHHTCTTEEEEEEECCCCSSBSSCTHHHHHHHHHHHHHHHH-HHTTC--CCCEEECCCCBCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH-HhcCC--CCCEEEECCCcCcCC
Confidence 469999999999999998887 89999999999999888888889999999998884 44588 788887 1
Q ss_pred --------hHH---HHhh---hcCC----CC--eeeeCceEEEEe-----C-----c-ee---------eeeccCCC---
Q 048797 140 --------RRG---RADC---HFGA----GP--FPRDSAFTLATR-----N-----C-RE---------SSACSNRT--- 176 (240)
Q Consensus 140 --------i~~---~l~~---~~~~----~p--~lva~a~~l~t~-----n-----~-~~---------P~~~~~~~--- 176 (240)
+.. .++. .++. +| ++++++++|+++ . . ++ |.+.....
T Consensus 250 ~~~~~~~~~~~~~~~vr~g~~~yg~~~~~e~Gr~~~~~a~~l~t~Vi~vk~~~g~~~a~v~~G~~dg~~~~l~~~~~~~v 329 (420)
T 2p3e_A 250 KPEDKEPAPQDLADLLKDLLENVKAKIILEPGRSIMGNAGILITQVQFLKDKGSKHFIIVDAGMNDLIRPSIYNAYHHII 329 (420)
T ss_dssp STTCCCCCHHHHHHHHTTTC--CCSEEEECCSHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTCCHHHHHCCCCCEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCEEEEeCCHHHHhhceEEEEEEEEEEecCCcEEEEEcCchhcccchhhhCccceeE
Confidence 111 1111 1121 23 789999999998 0 0 11 11111100
Q ss_pred ----CCCCeeeEEEeccCcCCCcccccCC--CCCCCCCEEEEcCCCccccccCCCCCCCCCCCeeEE
Q 048797 177 ----CTGMIYNSTVFGPTLDAYDKLFTGH--PELQVGNWLVFSQIGACTAVYGSGFKGFNTADIPTC 237 (240)
Q Consensus 177 ----~~~~~~~~~i~G~~C~~~D~l~~~~--p~l~~GD~l~~~~~GAY~~~~s~~Fn~~~~p~~v~~ 237 (240)
...+..++.|+|++|++.|++..++ |++++||+|+|.++|||+++|+|+||++++|+++++
T Consensus 330 ~v~~~g~~~~~~~i~G~~Cms~D~~~~d~~lp~~~~GD~v~~~~~gAY~~~~~s~fn~~~~p~~~~~ 396 (420)
T 2p3e_A 330 PVETKERKKVVADIVGPICETGDFLALDREIEEVQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLV 396 (420)
T ss_dssp ESBCCC---CEEEEECSSSSTTCEEEEEEECCCCCTTCEEEECSCTTTTGGGCBCGGGCCCCEEEEE
T ss_pred ecCCCCCCceeEEEEccCCCCccEEeecccCCCCCCCCEEEEeCCCcchhhhhhhhhcCCCCeEEEE
Confidence 0112367999999999999999888 899999999999999999999999999999976543
No 18
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp}
Probab=99.94 E-value=1.5e-25 Score=209.65 Aligned_cols=230 Identities=14% Similarity=0.167 Sum_probs=170.1
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHH---HCCCC--cc--CHHHHc------cccC-CCCcEEEEEeeCCCCCC-cc-c
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEAL---GSNFD--YA--SQAEIK------GKWH-PRCDLLIRIKALDDCKA-VC-P 65 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~---~~gv~--~~--s~~EL~------~~~~-~~~~v~lRi~~~~~~~~-~~-~ 65 (240)
|+++|+++++|+|+| .|++++|+.|+ +.|.. ++ |++||+ ++.+ +.++|+||||| +..++ .+ .
T Consensus 119 al~aG~~~~~Iv~nG-~K~~e~I~~Al~a~~~g~~v~ivVDS~~ELe~l~~~a~~~g~~~~~V~LRInp-~~~g~~~~~~ 196 (619)
T 3nzp_A 119 AMAYNNEGAPITVNG-FKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRL-HSAGVGIWAK 196 (619)
T ss_dssp HHHHSCTTSEEEECS-CCCHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTSCSCCCEEEEEBCC-TTC-------
T ss_pred HHhcCCCCCEEEeCC-CCCHHHHHHHHhhhhcCCcEEEEECCHHHHHHHHHHHHHcCCCCCEEEEEEec-CCCCCccccc
Confidence 577899999999988 59999999987 55643 33 999998 3445 78999999999 53322 22 2
Q ss_pred CCC-CCCCCCCHHHHHHHHHHHHhCC-C-cEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc----
Q 048797 66 QAQ-DSKCGANLAEIGALLEAALASQ-L-GVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH---- 138 (240)
Q Consensus 66 ~~~-~skFG~~~~~~~~~l~~a~~~~-l-~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld---- 138 (240)
++. .||||++++++.++++.+++.+ + ++.|||||+|||+.|++.|.++++.+.++++. .++.|+ |++++||
T Consensus 197 TGg~~sKFGi~~ee~~~ll~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~al~~~~~l~~~-L~~~G~-~~l~~LDiGGG 274 (619)
T 3nzp_A 197 SGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTE-LRKMGA-KNLKAINLGGG 274 (619)
T ss_dssp ------CCSBCHHHHHHHHHHHHHTTCTTTEEEEECCCCSCBCCSHHHHHHHHHHHHHHHH-HHHTTC-TTCCEEEEESC
T ss_pred CCCCCccCcCCHHHHHHHHHHHHhCCCCCceeEEEEEeCCCCCCHHHHHHHHHHHHHHHHH-HHHhcC-CCCCEEEeCCC
Confidence 332 5799999999999999998887 4 59999999999999999999999999999998 455677 3688888
Q ss_pred -----------------------hhHHHHhhhc-----CC-----CC--eeeeCceEEEEe------C---c--------
Q 048797 139 -----------------------WRRGRADCHF-----GA-----GP--FPRDSAFTLATR------N---C-------- 166 (240)
Q Consensus 139 -----------------------~i~~~l~~~~-----~~-----~p--~lva~a~~l~t~------n---~-------- 166 (240)
.|.+.+++++ +. || |+|++||+|+|+ . .
T Consensus 275 ~gI~Y~~~~~~~s~~~~l~eya~~I~~~l~~~~~~~~~~~p~Ii~EPGR~iva~aGvLvt~Vi~vk~~~~~~~~~~~~~~ 354 (619)
T 3nzp_A 275 LAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQ 354 (619)
T ss_dssp BCCCCCCSSSCCSCSSCHHHHHHHHHHHHHHHHHHTTCCCCEEEECCCHHHHGGGEEEEEEEEEEECCCCCGGGSCCCSS
T ss_pred cCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEeccHHHHHhhhhEEEEEEEEecCCCcccccCCCcc
Confidence 2333444432 11 25 999999999999 0 0
Q ss_pred --------------------------------------------------------------------------------
Q 048797 167 -------------------------------------------------------------------------------- 166 (240)
Q Consensus 167 -------------------------------------------------------------------------------- 166 (240)
T Consensus 355 ~~~~~~~l~~~~~~~~~~~~~e~~~d~~~~~~~~~~~f~~g~~~l~~ra~~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 434 (619)
T 3nzp_A 355 NPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQD 434 (619)
T ss_dssp CCHHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCC-------------
T ss_pred ccHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHH
Confidence
Q ss_pred ------------------------eeeeeccCCCCCCCeeeEEEeccCcCCCcccccCC------CCCC---CCCEEEEc
Q 048797 167 ------------------------RESSACSNRTCTGMIYNSTVFGPTLDAYDKLFTGH------PELQ---VGNWLVFS 213 (240)
Q Consensus 167 ------------------------~~P~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~------p~l~---~GD~l~~~ 213 (240)
+.|++...+....++...++++=||||.+.+--+. |+++ ..=+|.|.
T Consensus 435 ~~~~~y~~n~S~fqslpD~W~i~q~fpi~Pi~rl~e~p~~~~~l~diTCDsdg~i~~~~~~~l~lh~~~~~~~~y~lg~f 514 (619)
T 3nzp_A 435 EVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFF 514 (619)
T ss_dssp CCSBEEEESSCTTTTCHHHHHSSCCCCEEESSCTTSCCCCBBCCEESCSCTTSBCCCCSSSCCBCCCCCTTTSCCEEEEC
T ss_pred HhhHHheeeehhhccCcchhhcCcccceeeccccCCCcceeeEEecccccCCCccccCCcccccCCCCCCCCCCcEEEEE
Confidence 00333333333445678999999999999854121 4665 44569999
Q ss_pred CCCccccccCCCCCCCCCCCee
Q 048797 214 QIGACTAVYGSGFKGFNTADIP 235 (240)
Q Consensus 214 ~~GAY~~~~s~~Fn~~~~p~~v 235 (240)
.+|||.-.++..=|-|+.|..|
T Consensus 515 l~GAYQe~lg~~HnLfg~~~~v 536 (619)
T 3nzp_A 515 LVGAYQEVLGMKHNLFTHPTEA 536 (619)
T ss_dssp SCSSSTTTTCCCTTSCCCCEEE
T ss_pred ccchHHHHHhhccccCCCCCEE
Confidence 9999999999988889888643
No 19
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli}
Probab=99.93 E-value=3e-25 Score=208.86 Aligned_cols=158 Identities=12% Similarity=0.081 Sum_probs=122.7
Q ss_pred cccCCCCCC-cEEEcCCCCCHHHHHHHHH---CCCC--cc--CHHHHc------cccCCCCcEEEEEeeCCCCC-Ccc-c
Q 048797 2 LNALGVSGK-SVSLTVALRNENGLAEALG---SNFD--YA--SQAEIK------GKWHPRCDLLIRIKALDDCK-AVC-P 65 (240)
Q Consensus 2 al~~G~~~~-~Ii~~gp~K~~~~l~~A~~---~gv~--~~--s~~EL~------~~~~~~~~v~lRi~~~~~~~-~~~-~ 65 (240)
|+++|++|+ .|+++| +|++++|++|++ .|+. ++ |++||+ ++.++.++|+||||| +..+ ..+ .
T Consensus 158 al~aG~~p~~iIv~nG-~K~~eeI~~Al~~~~~G~~v~ivVDS~~ELe~L~~~A~~~g~~~~V~LRVnp-~~~~~~~~i~ 235 (666)
T 3nzq_A 158 VLAHAGMTRSVIVCNG-YKDREYIRLALIGEKMGHKVYLVIEKMSEIAIVLDEAERLNVVPRLGVRARL-ASQGSGKWQS 235 (666)
T ss_dssp HHHHHTTSCCEEEECS-CCCHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHTTCCCCEEEEBCC-SSSCSSTTCS
T ss_pred HHHcCCCCCcEEEEcC-CCCHHHHHHHHHhhccCCCEEEEECCHHHHHHHHHHHHHcCCCceEEEEEEe-cCCCCcCccc
Confidence 577899985 555555 799999999985 5654 23 999998 245667899999998 5322 122 2
Q ss_pred CCC-CCCCCCCHHHHHHHHHHHHhCC-Cc-EEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc----
Q 048797 66 QAQ-DSKCGANLAEIGALLEAALASQ-LG-VVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH---- 138 (240)
Q Consensus 66 ~~~-~skFG~~~~~~~~~l~~a~~~~-l~-~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld---- 138 (240)
++. .||||++++++.++++.+++.+ ++ +.|||||+|||+.|++.|.++++.+.++++. .++.|+ ++++||
T Consensus 236 TG~~~SKFGi~~~e~~~ll~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~l~~~-L~~~G~--~l~~LDiGGG 312 (666)
T 3nzq_A 236 SGGEKSKFGLAATQVLQLVETLREAGRLDSLQLLHFHLGSQMANIRDIATGVRESARFYVE-LHKLGV--NIQCFDVGGG 312 (666)
T ss_dssp SSSSCCCSCBCHHHHHHHHHHHHHTTCTTTEEEEECCCCSSCCCHHHHHHHHHHHHHHHHH-HHTTTC--CCCEEECCSC
T ss_pred cCCCCCcCcCCHHHHHHHHHHHHhCCCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHH-HHhcCC--CCCEEEeCCC
Confidence 232 5799999999999999988875 55 9999999999999999999999999999999 467788 899998
Q ss_pred -------------------------hhHHHHhhhc-----CC-----CC--eeeeCceEEEEe
Q 048797 139 -------------------------WRRGRADCHF-----GA-----GP--FPRDSAFTLATR 164 (240)
Q Consensus 139 -------------------------~i~~~l~~~~-----~~-----~p--~lva~a~~l~t~ 164 (240)
.|.+.+++++ +. || |+|++||+|+++
T Consensus 313 fgI~Y~~~~~~~~~s~~~~leeya~~I~~~l~~~~~~~~~~~p~Ii~EPGRaiVa~aGvLvt~ 375 (666)
T 3nzq_A 313 LGVDYEGTRSQSDCSVNYGLNEYANNIIWAIGDACEENGLPHPTVITESGRAVTAHHTVLVSN 375 (666)
T ss_dssp CCCCSSSSCSSSTTCCSSCHHHHHHHHHHHHHHHHHHHTCCCCEEEECCHHHHHTTSEEEEEE
T ss_pred cCCCcCCccccccccCCCCHHHHHHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHhhhEEEEE
Confidence 1223344432 11 25 999999999998
No 20
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus}
Probab=99.93 E-value=6.3e-25 Score=206.12 Aligned_cols=158 Identities=12% Similarity=0.087 Sum_probs=124.0
Q ss_pred cccCCCCCCc-EEEcCCCCCHHHHHHHHH---CCCCc--c--CHHHHc------cccCCCCcEEEEEeeCCCCC-Ccc-c
Q 048797 2 LNALGVSGKS-VSLTVALRNENGLAEALG---SNFDY--A--SQAEIK------GKWHPRCDLLIRIKALDDCK-AVC-P 65 (240)
Q Consensus 2 al~~G~~~~~-Ii~~gp~K~~~~l~~A~~---~gv~~--~--s~~EL~------~~~~~~~~v~lRi~~~~~~~-~~~-~ 65 (240)
|+++|++|++ |+|+| +|++++|++|++ .|+.+ + |++||+ ++.++.++|+||||| +..+ ..+ .
T Consensus 141 al~aG~~~e~iIv~nG-~K~~eeI~~Al~~~~~G~~v~IvVDS~~EL~~I~~~A~~~g~~~~V~LRInp-~~~~~~~~i~ 218 (648)
T 3n2o_A 141 VLAMAQHASSVIVCNG-YKDREYIRLALIGEKLGHKVFIVLEKMSELDLVLREAKSLGVTPRLGIRIRL-ASQGAGKWQA 218 (648)
T ss_dssp HHHHTSSSCCEEEECS-CCCHHHHHHHHHHHHTTCEEEEEECSTHHHHHHHHHHHHHTCCCEEEEEBCC-STTSTTTTCS
T ss_pred HHHcCCCCCcEEEecC-CCCHHHHHHHHHhhcCCCCEEEEECCHHHHHHHHHHHHhcCCCcEEEEEEEC-CCCCCCCccc
Confidence 6789999975 66665 799999999984 67543 2 999998 345678899999998 5322 222 2
Q ss_pred CC-CCCCCCCCHHHHHHHHHHHHhCC-Cc-EEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc----
Q 048797 66 QA-QDSKCGANLAEIGALLEAALASQ-LG-VVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH---- 138 (240)
Q Consensus 66 ~~-~~skFG~~~~~~~~~l~~a~~~~-l~-~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld---- 138 (240)
++ ..||||++++++.++++.+++.+ ++ +.|||||+|||+.|++.|.++++.+.++++. .++.|+ ++++||
T Consensus 219 TGg~~SKFGi~~~e~~~ll~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~al~~~~~l~~~-L~~~G~--~l~~LDiGGG 295 (648)
T 3n2o_A 219 SGGEKSKFGLSASQVLNVISRLKKENQLDTLQLVHFHLGSQMANIRDVRNGVNESARFYCE-LRTLGA--NITYFDVGGG 295 (648)
T ss_dssp SSSCCCCCCBCHHHHHHHHHHHHHTTCGGGEEEEECCCCSSBCCHHHHHHHHHHHHHHHHH-HHHTTC--CCCEEECCSC
T ss_pred cCCCCCcCcCCHHHHHHHHHHHHhCCCCCceEEEEEECCCCCCCHHHHHHHHHHHHHHHHH-HHhcCC--CCcEEEeCCC
Confidence 22 25799999999999999998886 54 9999999999999999999999999999999 456788 899998
Q ss_pred -------------------------hhHHHHhhhc-----CC-----CC--eeeeCceEEEEe
Q 048797 139 -------------------------WRRGRADCHF-----GA-----GP--FPRDSAFTLATR 164 (240)
Q Consensus 139 -------------------------~i~~~l~~~~-----~~-----~p--~lva~a~~l~t~ 164 (240)
.|.+.+++++ +. || |+|++||+|+++
T Consensus 296 fgI~Y~~~~~~~~~s~~~~leeya~~I~~~l~~~~~~~~~~~p~Ii~EPGR~iVa~aGvLvt~ 358 (648)
T 3n2o_A 296 LAIDYDGTRSQSSNSMNYGLVEYARNIVNTVGDVCKDYKQPMPVIISESGRSLTAHHAVLISN 358 (648)
T ss_dssp BCCCTTSCCCSSTTSCSCCHHHHHHHHHHHHHHHHHHHTCCCCEEEECCHHHHHGGGEEEEEE
T ss_pred cCCCcCCccccccccCCCCHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCHHHHHhhheEEEE
Confidence 1233344432 11 25 999999999998
No 21
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=99.74 E-value=1.4e-17 Score=148.60 Aligned_cols=199 Identities=16% Similarity=0.157 Sum_probs=138.0
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc--c----ccCCCCcEEEEEeeCCCCCCcccCCCCCCCC
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK--G----KWHPRCDLLIRIKALDDCKAVCPQAQDSKCG 73 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~--~----~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG 73 (240)
++++|+++ +|++.|| |+.++++.+++.++... |++|++ . +.++.++|.||||+ . .+|||
T Consensus 76 ~~~~G~~~-~Il~~g~-~~~~~~~~~~~~~i~~~vds~~~l~~l~~~a~~~~~~~~V~l~vdt-G----------~~R~G 142 (384)
T 1xfc_A 76 LRADGITA-PVLAWLH-PPGIDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTATVTVKVDT-G----------LNRNG 142 (384)
T ss_dssp HHHTTCCS-CEEECCC-CTTCCCHHHHHTTCEEEECSHHHHHHHHHHHHHHCCCEEEEEEBCS-S----------CCSSS
T ss_pred HHhcCCCC-CEEEEcC-CCHHHHHHHHHcCcEEEECCHHHHHHHHHHHHhcCCceEEEEEEEC-C----------CCccC
Confidence 34678876 5889999 88999999999998654 999998 2 34567889999987 3 13999
Q ss_pred CCH---HHHHHHHHHHHhC-CCcEEEEEEeeCCCCC-ChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc-----hhHHH
Q 048797 74 ANL---AEIGALLEAALAS-QLGVVGISFHIGSGAT-DFGAFDGAISAAKAVFDAASARHGLTDQMRAKH-----WRRGR 143 (240)
Q Consensus 74 ~~~---~~~~~~l~~a~~~-~l~~~Glh~H~gS~~~-~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld-----~i~~~ 143 (240)
+++ +++.++++.+++. ++++.|||+|.||+.. +...+.+.++...++++. .++.|+ ++++++ .+...
T Consensus 143 ~~~~~~~~~~~~~~~i~~~~~l~l~Gl~tH~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~g~--~~~~l~~g~s~~~~~~ 219 (384)
T 1xfc_A 143 VGPAQFPAMLTALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFLAQ-AREQGV--RFEVAHLSNSSATMAR 219 (384)
T ss_dssp BCTTTHHHHHHHHHHHHHTTSEEEEEEECCC-----CCSHHHHHHHHHHHHHHHH-HHHTTC--CCSEEECBCHHHHHHC
T ss_pred CCcCcHHHHHHHHHHHHhCCCCcEEEEEecCCCcCCCCcHHHHHHHHHHHHHHHH-HHhcCC--CCCeEEEecCHHHhcC
Confidence 999 8999999988875 8999999999999863 334566778888888877 455788 888887 11111
Q ss_pred Hhh----------hcCCCC------eeeeCceEEEEe---------C--------ce---------eeeeccC---C-C-
Q 048797 144 ADC----------HFGAGP------FPRDSAFTLATR---------N--------CR---------ESSACSN---R-T- 176 (240)
Q Consensus 144 l~~----------~~~~~p------~lva~a~~l~t~---------n--------~~---------~P~~~~~---~-~- 176 (240)
.+. .++..| +.+.++++|+++ + +. +|+-+.. + .
T Consensus 220 ~~~~~~~vR~G~~lyg~~~~~~~~e~~~~~a~~l~~~Vi~vk~~~~g~~v~yg~~~~~~~~~~~a~v~~Gy~Dg~~r~l~ 299 (384)
T 1xfc_A 220 PDLTFDLVRPGIAVYGLSPVPALGDMGLVPAMTVKCAVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADGVFRSLG 299 (384)
T ss_dssp GGGCCSEECCSGGGGTCCSSGGGCCTTCCCCEEEEEECCEEEEECTTCEESGGGCEECSSCEEEEEECCCGGGTCCGGGT
T ss_pred ccccCCEEccCHHhHCCCcccccccCCCceEEEEEEEEEEEEEcCCCCEEEeCCEEECCCCCEEEEEeeccccCcccccC
Confidence 111 111112 357889999998 0 00 0111110 0 0
Q ss_pred CCC----CeeeEEEeccCcCCCcccccCC---C-CCCCCCEEEEcCCCcc
Q 048797 177 CTG----MIYNSTVFGPTLDAYDKLFTGH---P-ELQVGNWLVFSQIGAC 218 (240)
Q Consensus 177 ~~~----~~~~~~i~G~~C~~~D~l~~~~---p-~l~~GD~l~~~~~GAY 218 (240)
... ...++.|+|++|+ |.+..++ | ++++||+|+|.++|+|
T Consensus 300 ~~~~v~~~g~~~~ivG~vcm--D~~~~d~~~~p~~~~~GD~v~l~g~~~~ 347 (384)
T 1xfc_A 300 GRLEVLINGRRCPGVGRICM--DQFMVDLGPGPLDVAEGDEAILFGPGIR 347 (384)
T ss_dssp TTCEEEETTEEEEEESCCCS--SCEEEEEESSSCCCCTTCEEEEECSSTT
T ss_pred CCCeEEECCEEeeEeeEecc--ceEEEEccCCCCCCCCCCEEEEEeCCCC
Confidence 000 1357899999996 9998776 7 8999999999999987
No 22
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=99.70 E-value=6.3e-17 Score=143.07 Aligned_cols=198 Identities=21% Similarity=0.252 Sum_probs=131.4
Q ss_pred cccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc--cccCC-CCcEEEEEeeCCCCCCcccCCCCCCCCCCH
Q 048797 2 LNALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK--GKWHP-RCDLLIRIKALDDCKAVCPQAQDSKCGANL 76 (240)
Q Consensus 2 al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~--~~~~~-~~~v~lRi~~~~~~~~~~~~~~~skFG~~~ 76 (240)
++++|++++ |++-|| ++.++++.|++.++... |++|++ .+..+ ..+|.|||++ . .+|||+++
T Consensus 68 ~~~~G~~~~-il~~~~-~~~~~~~~~~~~~i~~~vds~~~l~~l~~~a~~~~~v~l~vdt-G----------~~R~G~~~ 134 (361)
T 2dy3_A 68 LRDIGISQE-VLCWIW-TPEQDFRAAIDRNIDLAVISPAHAKALIETDAEHIRVSIKIDS-G----------LHRSGVDE 134 (361)
T ss_dssp HHHTTCCSE-EEECCC-CTTSCHHHHHTTTCEEEECSHHHHHHHHTSCCSCEEEEEEBCC-S----------SCSSSBCH
T ss_pred HHhcCCCCC-EEEECC-CCHHHHHHHHHcCCEEEECCHHHHHHHHHhCccCCEEEEEEeC-C----------CCCCCCCH
Confidence 346788765 556666 88889999999998654 999998 33322 4678888876 2 23999999
Q ss_pred HHHHHHHHHHHhC-CCcEEEEEEeeCCCCCCh-HHHHHHHHHHHHHHHHHHHhCCCCCCCCccc-----hhHHHHhh---
Q 048797 77 AEIGALLEAALAS-QLGVVGISFHIGSGATDF-GAFDGAISAAKAVFDAASARHGLTDQMRAKH-----WRRGRADC--- 146 (240)
Q Consensus 77 ~~~~~~l~~a~~~-~l~~~Glh~H~gS~~~~~-~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld-----~i~~~l~~--- 146 (240)
+++.++++.+++. ++++.|+|+|.||+.... ..+.+.++.+.++++. .++.|+ +++++| .+...-+.
T Consensus 135 ~~~~~~~~~~~~~~~l~~~Gl~tH~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~g~--~~~~~~~g~s~~~~~~~~~~~~ 211 (361)
T 2dy3_A 135 QEWEGVFSALAAAPHIEVTGMFTHLACADEPENPETDRQIIAFRRALAL-ARKHGL--ECPVNHVCNSPAFLTRSDLHME 211 (361)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEECCCC--------CHHHHHHHHHHHHHH-HHHTTC--CCCSCBCCCHHHHHHCGGGCTT
T ss_pred HHHHHHHHHHHhCCCCCEEEEEecCCCcCCCCcHHHHHHHHHHHHHHHH-HHhcCC--CCCeEEEeCCHHHhcCcccCCC
Confidence 9999999988875 899999999999986422 2367778888888877 455788 888888 11111111
Q ss_pred -------hcCCCC-----eeeeCceEEEEe-C----------------ce---------eeeeccC---CC--CCC----
Q 048797 147 -------HFGAGP-----FPRDSAFTLATR-N----------------CR---------ESSACSN---RT--CTG---- 179 (240)
Q Consensus 147 -------~~~~~p-----~lva~a~~l~t~-n----------------~~---------~P~~~~~---~~--~~~---- 179 (240)
.++..| .-+.++++|+++ . +. +|+-+.. +. ...
T Consensus 212 ~vR~G~~l~g~~~~~~~e~~~~~a~~l~~~Vi~vk~~~~g~~v~yg~~~~~~~~~~~a~v~~Gy~Dg~~r~l~~~~~v~i 291 (361)
T 2dy3_A 212 MVRPGLAFYGLEPVAGLEHGLKPAMTWEAKVSVVKQIEAGQGTSYGLTWRAEDRGFVAVVPAGYADGMPRHAQGKFSVTI 291 (361)
T ss_dssp EECCCGGGGTCCSSTTCCCSCCCCEEEEEECCEEEECC---------------CCEEEEESCCTTTTCCGGGTTTCEEEE
T ss_pred EEecchHhhCCCcccccCCCceeEEEEEEEEEEEEEcCCCCEEeeCCEEECCCCCEEEEEeeccccCcCcccCCCceEEE
Confidence 111112 137889999998 0 00 0211110 00 000
Q ss_pred CeeeEEEeccCcCCCcccccCC---C-CCCCCCEEEEcCCCc
Q 048797 180 MIYNSTVFGPTLDAYDKLFTGH---P-ELQVGNWLVFSQIGA 217 (240)
Q Consensus 180 ~~~~~~i~G~~C~~~D~l~~~~---p-~l~~GD~l~~~~~GA 217 (240)
..+.+.|+|++| +|.+..++ | ++++||+|+|.+.+.
T Consensus 292 ~g~~~~ivG~vc--mD~~~~d~~~~~~~~~~GD~v~~~g~~~ 331 (361)
T 2dy3_A 292 DGLDYPQVGRVC--MDQFVISLGDNPHGVEAGAKAVIFGENG 331 (361)
T ss_dssp TTEEEEEESCCC--SSCEEEEEETCTTCCCTTCEEEEESTTS
T ss_pred CCEEeeEeeEEe--cccEEEEccCCCCCCCCCCEEEEEcCCC
Confidence 135789999999 79998776 7 899999999988664
No 23
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=99.62 E-value=2.1e-15 Score=134.73 Aligned_cols=201 Identities=13% Similarity=0.154 Sum_probs=135.3
Q ss_pred ccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc--c---ccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCC
Q 048797 3 NALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK--G---KWHPRCDLLIRIKALDDCKAVCPQAQDSKCGAN 75 (240)
Q Consensus 3 l~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~--~---~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~ 75 (240)
+++|++++ |++.|+ ++.++++.+++.++... |+++++ . +.++.++|.|+|+. . .+|||++
T Consensus 78 r~~G~~~~-il~~g~-~~~~~~~~~~~~~i~~~vds~~~l~~l~~a~~~~~~~~V~lkvdt-G----------m~R~G~~ 144 (391)
T 2vd8_A 78 RRAGITAP-ILVLGP-SPPRDINVAAENDVALTVFQXEWVDEAIXLWDGSSTMXYHINFDS-G----------MGRIGIR 144 (391)
T ss_dssp HHTTCCSC-EEECSC-CCGGGHHHHHHTTEEEECCCHHHHHHHHHHCCSSCCEEEEEEBCS-S----------CCSSSBC
T ss_pred HhcCCCCc-eEEecC-CChHHHHHHHHCCeEEEEcCHHHHHHHHHHHhcCCceEEEEEEeC-C----------CCCCCCC
Confidence 45788766 555576 89999999999998654 999998 2 23455678888876 2 1399998
Q ss_pred H-HHHHHHHHHHHhC-CCcEEEEEEeeCCCCC-ChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc-----hhHHHHhh-
Q 048797 76 L-AEIGALLEAALAS-QLGVVGISFHIGSGAT-DFGAFDGAISAAKAVFDAASARHGLTDQMRAKH-----WRRGRADC- 146 (240)
Q Consensus 76 ~-~~~~~~l~~a~~~-~l~~~Glh~H~gS~~~-~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld-----~i~~~l~~- 146 (240)
+ +++.++++.+++. ++++.|+|+|.+|+.. +...+.+.++...++.+. .++.|+ ++.+++ .+...-+.
T Consensus 145 ~~~e~~~~~~~i~~~~~l~l~Gl~tH~~~~d~~~~~~~~~q~~~f~~~~~~-l~~~g~--~~~~~~~gnS~g~~~~~~~~ 221 (391)
T 2vd8_A 145 ERXELXGFLXSLEGAPFLELEGVYTHFATADEVETSYFDXQYNTFLEQLSW-LXEFGV--DPXFVHTANSAATLRFQGIT 221 (391)
T ss_dssp CHHHHHHHHHHHTTCTTEEEEEEECCCSSTTSSSCHHHHHHHHHHHHHHHH-HHHTTC--CCCSEECCCHHHHTTCTTCC
T ss_pred chhhHHHHHHHHhhcCCceEEEeeeccccccCCCcHHHHHHHHHHHHHHHH-HHhccC--CcceEEecchhHhhcCcccC
Confidence 5 8999999988774 8999999999999864 333466677777777777 445688 777676 11000000
Q ss_pred ---------hcCCC---------CeeeeCceEEEEe---------C--------ce---------eeeeccC---CCCCC
Q 048797 147 ---------HFGAG---------PFPRDSAFTLATR---------N--------CR---------ESSACSN---RTCTG 179 (240)
Q Consensus 147 ---------~~~~~---------p~lva~a~~l~t~---------n--------~~---------~P~~~~~---~~~~~ 179 (240)
.+... ++.+.++++|+++ + +. +|+-+.. +.-..
T Consensus 222 ~~~vR~G~~lyg~~p~~~~~~~g~~~l~pa~~l~~~V~~vk~~~~G~~v~yg~~~~~~~~~~~a~v~~GyaDg~~r~l~~ 301 (391)
T 2vd8_A 222 FNAVRIGIAMYGLSPSVEIRPFLPFXLEPALSLHTXVAHIKQVIXGDGISYNVTYRTXTEEWIATVAIGYADGWLRRLQG 301 (391)
T ss_dssp TTEEEESTTTTTCCSCTTTGGGCSSCCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCGGGTT
T ss_pred CCEEehhHHhcCCCCccccccccccccceeEEEEEEeeEEEEcCCCCeEeeCCEEEcCCCcEEEEEeeeeecccccccCC
Confidence 01111 1467899999988 0 00 0211110 00001
Q ss_pred -----CeeeEEEeccCcCCCcccccCC-CCCCCCCEEEEcCCC-ccccc
Q 048797 180 -----MIYNSTVFGPTLDAYDKLFTGH-PELQVGNWLVFSQIG-ACTAV 221 (240)
Q Consensus 180 -----~~~~~~i~G~~C~~~D~l~~~~-p~l~~GD~l~~~~~G-AY~~~ 221 (240)
....+.|+|+.| .|.+..++ |++++||+++|.+.+ +|+.+
T Consensus 302 ~~v~v~g~~~~ivG~vc--mD~~~vd~~~~~~~GD~v~l~g~~~~~~~~ 348 (391)
T 2vd8_A 302 FEVLVNGXRVPIVGRVT--MDQFMIHLPCEVPLGTXVTLIGRQGDEYIS 348 (391)
T ss_dssp CEEEETTEEEEEESCCC--SSCEEEEESSCCCTTCEEEEEEEETTEEEC
T ss_pred CeEEECCeecceeccee--cceeEeecCCCCCCCCEEEEECCCCCCCCC
Confidence 125688999999 59999888 899999999988754 55544
No 24
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A
Probab=99.61 E-value=2.9e-15 Score=133.75 Aligned_cols=199 Identities=12% Similarity=0.066 Sum_probs=130.1
Q ss_pred ccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc--c---ccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCC
Q 048797 3 NALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK--G---KWHPRCDLLIRIKALDDCKAVCPQAQDSKCGAN 75 (240)
Q Consensus 3 l~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~--~---~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~ 75 (240)
+++|+++ +|++.|+ ++.++++.+++.++... |+++++ . +..+.++|.|+|++ . .+|||++
T Consensus 74 r~aG~~~-~Il~~g~-~~~~~~~~~~~~~i~~~vds~~~l~~l~~~a~~~~~~~V~lkvdt-G----------m~R~G~~ 140 (388)
T 1bd0_A 74 REKGIEA-PILVLGA-SRPADAALAAQQRIALTVFRSDWLEEASALYSGPFPIHFHLKMDT-G----------MGRLGVK 140 (388)
T ss_dssp HHTTCCS-CEEECSC-CCGGGHHHHHHTTEEEEECCHHHHHHHHHHCCCSSCEEEEEEBCS-S----------SCSSSBC
T ss_pred HhCCcCC-CEEEECC-CCHHHHHHHHHcCCEEEECCHHHHHHHHHHhccCCCeEEEEEEcC-C----------CCcCCCC
Confidence 4578876 5888888 99999999999998654 999998 2 23455688888887 2 1399999
Q ss_pred H-HHHHHHHHHHHhC-CCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc-----hhHHHHhh--
Q 048797 76 L-AEIGALLEAALAS-QLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH-----WRRGRADC-- 146 (240)
Q Consensus 76 ~-~~~~~~l~~a~~~-~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld-----~i~~~l~~-- 146 (240)
+ +++.++++.+++. ++++.|+|+|.+|+....+.+. ....+.|..+.+.+|+ ++.+++ .+...-+.
T Consensus 141 ~~~e~~~~~~~i~~~~~l~l~Gl~tH~~~~~~~~~~~~---~~q~~~f~~l~~~~g~--~~~~~~~g~S~~~~~~~~~~~ 215 (388)
T 1bd0_A 141 DEEETKRIVALIERHPHFVLEGLYTHFATADEVNTDYF---SYQYTRFLHMLEWLPS--RPPLVHCANSAASLRFPDRTF 215 (388)
T ss_dssp SHHHHHHHHHHHHHSTTEEEEEEECCCSSTTSSCCHHH---HHHHHHHHHHHTTCSS--CCSEEECCCHHHHHHCTTSCT
T ss_pred CHHHHHHHHHHHHhCCCceEEEEEEccCCCCCCCcHHH---HHHHHHHHHHHhhcCC--CCCeEEecCCHHHhcCcccCC
Confidence 6 8999999988774 8999999999999864222221 1122233333333488 777777 11100000
Q ss_pred --------hc---CC-----C-CeeeeCceEEEEe---------C--------ce---------eeeeccC---C-CCC-
Q 048797 147 --------HF---GA-----G-PFPRDSAFTLATR---------N--------CR---------ESSACSN---R-TCT- 178 (240)
Q Consensus 147 --------~~---~~-----~-p~lva~a~~l~t~---------n--------~~---------~P~~~~~---~-~~~- 178 (240)
.+ |. + ++.+.++++|+++ + +. +|+-+.. + ...
T Consensus 216 ~~vR~G~~lyG~~p~~~~~~~~~~~l~pa~~l~~~V~~vk~~~~G~~v~Yg~~~~~~~~~~~a~v~~GyaDg~~r~l~~~ 295 (388)
T 1bd0_A 216 NMVRFGIAMYGLAPSPGIKPLLPYPLKEAFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQHF 295 (388)
T ss_dssp TEEEECGGGGTCCSCGGGGGGCSSCCCCCEEEEEECSEEEEECTTCEESGGGCEECCSSEEEEEESCCGGGTCCGGGGGC
T ss_pred CEEehhHHHHCCCcccccccccccCcceEEEEEEEEEEEEEcCCCCeEecCCeEECCCCcEEEEEeeeeccCccccccCC
Confidence 11 11 1 1467899999998 0 00 0211110 0 000
Q ss_pred ---CCeeeEEEeccCcCCCcccccCC-CCCCCCCEEEEcCCC-ccccc
Q 048797 179 ---GMIYNSTVFGPTLDAYDKLFTGH-PELQVGNWLVFSQIG-ACTAV 221 (240)
Q Consensus 179 ---~~~~~~~i~G~~C~~~D~l~~~~-p~l~~GD~l~~~~~G-AY~~~ 221 (240)
-....+.|+|+.| .|.+..++ |++++||+++|.+.+ +|+.+
T Consensus 296 ~v~v~g~~~~ivG~vc--mD~~~vdv~~~~~~GD~v~l~g~~~~~~~~ 341 (388)
T 1bd0_A 296 HVLVDGQKAPIVGRIC--MDQCMIRLPGPLPVGTKVTLIGRQGDEVIS 341 (388)
T ss_dssp EEEETTEEEEEESCCC--SSCEEEECSSCCCTTCEEEEEEEETTEEEC
T ss_pred cEeECCEEeeEEeecc--cceEEEECCCCCCCCCEEEEecCCCCCCCC
Confidence 0135689999999 59999888 899999999988754 55544
No 25
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=99.61 E-value=2.6e-15 Score=133.94 Aligned_cols=198 Identities=15% Similarity=0.177 Sum_probs=133.2
Q ss_pred ccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc--c----ccCCCCcEEEEEeeCCCCCCcccCCCCCCCCC
Q 048797 3 NALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK--G----KWHPRCDLLIRIKALDDCKAVCPQAQDSKCGA 74 (240)
Q Consensus 3 l~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~--~----~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~ 74 (240)
+++|++++ |++.|+. +.++++.+++.++... |+++++ . +.++.++|.|+|+. . .+|||+
T Consensus 73 ~~~G~~~~-il~~~~~-~~~~~~~~~~~~i~~~vds~~~l~~l~~~a~~~~~~~~V~l~vdt-G----------~~R~G~ 139 (386)
T 1vfs_A 73 RAAGIQGR-IMCWLWT-PGGPWREAIETDIDVSVSGMWALDEVRAAARAAGRTARIQLKADT-G----------LGRNGC 139 (386)
T ss_dssp HHTTCCSE-EEECCCC-TTCCHHHHHHTTCEEEECSHHHHHHHHHHHHHHTSCEEEEEEBCS-S----------CCSSSB
T ss_pred HhcCCCCC-EEEECCC-CHHHHHHHHHcCCEEEECCHHHHHHHHHHHHhcCCceEEEEEEcC-C----------CCCCCC
Confidence 45788765 5555553 5688999999998654 999988 2 34567789999987 2 139999
Q ss_pred CHHHHHHH---HHHHHhC-CCcEEEEEEeeCCCCC-ChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc-----hhHHHH
Q 048797 75 NLAEIGAL---LEAALAS-QLGVVGISFHIGSGAT-DFGAFDGAISAAKAVFDAASARHGLTDQMRAKH-----WRRGRA 144 (240)
Q Consensus 75 ~~~~~~~~---l~~a~~~-~l~~~Glh~H~gS~~~-~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld-----~i~~~l 144 (240)
+++++.++ ++.+++. ++++.|||+|.+|+.. +...+.+.++...++.+. .++.|+ ++++++ .+...-
T Consensus 140 ~~~e~~~~~~~~~~i~~~~~l~l~Gl~tH~~~~~~~~~~~~~~~~~~f~~~~~~-l~~~g~--~~~~~~~g~s~g~~~~~ 216 (386)
T 1vfs_A 140 QPADWAELVGAAVAAQAEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRDMLAY-AEKEGV--DPEVRHIANSPATLTLP 216 (386)
T ss_dssp CHHHHHHHHHHHHHHHHTTSEEEEEEECCCSSTTSTTCHHHHHHHHHHHHHHHH-HHHTTC--CCSEEEEECHHHHHHCG
T ss_pred CHhHHHHHHHHHHHHHhCCCceEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHH-HHhcCC--CCCeEEecCCHHHHcCc
Confidence 99988555 7777764 8999999999999863 222346677777777777 445688 777777 111100
Q ss_pred hh----------hcCCC---------CeeeeCceEEEEe---------C--------c---------eeeeeccC---C-
Q 048797 145 DC----------HFGAG---------PFPRDSAFTLATR---------N--------C---------RESSACSN---R- 175 (240)
Q Consensus 145 ~~----------~~~~~---------p~lva~a~~l~t~---------n--------~---------~~P~~~~~---~- 175 (240)
+. .|... ++.+.++++|+++ + + ++|+-+.. +
T Consensus 217 ~~~~~~vR~G~~lyg~~p~~~~~~~~~~~l~pa~~l~a~Vi~vk~~~~g~~v~yg~~~~~~~~~~~a~v~~Gy~Dg~~r~ 296 (386)
T 1vfs_A 217 ETHFDLVRTGLAVYGVSPSPELGTPAQLGLRPAMTLRASLALVKTVPAGHGVSYGHHYVTESETHLALVPAGYADGIPRN 296 (386)
T ss_dssp GGCSSEEEECGGGGTCCSCGGGCCTTTTTCCCCEEEEEECCEEEEECTTCEESGGGCEECSSSEEEEEECCCTTTTCCGG
T ss_pred cccCCEEEeChhhhCCCcccccccccccCCceEEEEEEEEEEEEEcCCCCeEeeCCEEECCCCCEEEEEecccccCcccc
Confidence 10 11111 1457889999988 0 0 01221110 0
Q ss_pred -CCCC----CeeeEEEeccCcCCCcccccCC-CCCC-CCCEEEEcCCCcc
Q 048797 176 -TCTG----MIYNSTVFGPTLDAYDKLFTGH-PELQ-VGNWLVFSQIGAC 218 (240)
Q Consensus 176 -~~~~----~~~~~~i~G~~C~~~D~l~~~~-p~l~-~GD~l~~~~~GAY 218 (240)
.... ....+.|+|+.| .|.+..++ .+++ +||+|+|.++|+|
T Consensus 297 l~~~~~v~i~g~~~~ivG~vc--mD~~~~dv~~~~~~~GD~v~l~g~~~~ 344 (386)
T 1vfs_A 297 ASGRGPVLVAGKIRRAAGRIA--MDQFVVDLGEDLAEAGDEAVILGDAER 344 (386)
T ss_dssp GTTTCEEEETTEEEEBCSCCC--SSCEEEEEETCCCCTTCEEEEECCGGG
T ss_pred cCCCCEEEECCEEeeEeeEee--cCcEEEEccCCCCCCCCEEEEEeCCCC
Confidence 0001 125689999999 49999887 5789 9999999999988
No 26
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Probab=99.46 E-value=3.4e-13 Score=118.91 Aligned_cols=193 Identities=12% Similarity=0.095 Sum_probs=123.1
Q ss_pred ccCCCCCCcEE-EcCCCCCHHHHHHHHHCCCCcc--CHHHHc--c--ccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCC
Q 048797 3 NALGVSGKSVS-LTVALRNENGLAEALGSNFDYA--SQAEIK--G--KWHPRCDLLIRIKALDDCKAVCPQAQDSKCGAN 75 (240)
Q Consensus 3 l~~G~~~~~Ii-~~gp~K~~~~l~~A~~~gv~~~--s~~EL~--~--~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~ 75 (240)
.++|+++ +|+ +.|+ ++.++++.+++.++... |.++++ . +.++..+|.|+|+. . .+|||++
T Consensus 67 ~~~G~~~-~Il~~~g~-~~~~~~~~~~~~~i~~~vds~~~l~~l~~a~~~~~~~V~l~vdt-G----------~~R~G~~ 133 (357)
T 1rcq_A 67 REAGIRQ-PILLLEGF-FEASELELIVAHDFWCVVHCAWQLEAIERASLARPLNVWLKMDS-G----------MHRVGFF 133 (357)
T ss_dssp HHTTCCS-CEEETTCC-SSGGGHHHHHHTTEEEEECSHHHHHHHHHCCCSSCEEEEEEBCS-S----------SCSSSBC
T ss_pred HhCCcCC-CEEEEeCC-CCHHHHHHHHHcCCEEEECCHHHHHHHHhhccCCCeEEEEEEcC-C----------CCCCCCC
Confidence 4578876 587 8888 89999999999987544 999988 3 23455789999987 2 1399999
Q ss_pred HHHHHHHHHHHHhC-CCcEEEEEEeeCCCCCChHHH-HHHHHHHHHHHHHHHHhCCCCCCCCccc--hhHHHHhh-----
Q 048797 76 LAEIGALLEAALAS-QLGVVGISFHIGSGATDFGAF-DGAISAAKAVFDAASARHGLTDQMRAKH--WRRGRADC----- 146 (240)
Q Consensus 76 ~~~~~~~l~~a~~~-~l~~~Glh~H~gS~~~~~~~~-~~~i~~~~~~~~~l~~~~g~~~~~~~ld--~i~~~l~~----- 146 (240)
++++.++++.+++. ++++.|||+|.+++....+.+ .+.++...++ .+.+.. ++...| .+-...+.
T Consensus 134 ~~~~~~~~~~i~~~~~l~l~Gl~th~~~~~~~~~~~~~~~~~~f~~~----~~~l~~--~~s~~ns~~~~~~~~~~~~~v 207 (357)
T 1rcq_A 134 PEDFRAAHERLRASGKVAKIVMMSHFSRADELDCPRTEEQLAAFSAA----SQGLEG--EISLRNSPAVLGWPKVPSDWV 207 (357)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECCCSSTTCTTCTHHHHHHHHHHHH----HTTCCS--CEECCCHHHHHHCTTSCCSEE
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEEcccCCCCCCcHHHHHHHHHHHHH----HhccCC--CeEEEeCHHhhcCcccCCCEE
Confidence 99999999888775 899999999999986433223 2333333332 333332 233333 00000000
Q ss_pred -----hcCC-------CC-eeeeCceEEEEe---------C--------cee---------eeeccC---CCCCC-----
Q 048797 147 -----HFGA-------GP-FPRDSAFTLATR---------N--------CRE---------SSACSN---RTCTG----- 179 (240)
Q Consensus 147 -----~~~~-------~p-~lva~a~~l~t~---------n--------~~~---------P~~~~~---~~~~~----- 179 (240)
.|+. ++ +...++++++++ + +.. |+-+.. +.-+.
T Consensus 208 R~G~~lyg~~~~~~~~~~~~~~~~a~~l~~~Vi~vk~~~~g~~v~yg~~~~~~~~~~~a~v~~Gy~dg~~r~l~~~~~v~ 287 (357)
T 1rcq_A 208 RPGILLYGATPFERAHPLADRLRPVMTLESKVISVRDLPAGEPVGYGARYSTERRQRIGVVAMGYADGYPRHAADGTLVF 287 (357)
T ss_dssp CCCGGGGTCCSSSSCCTTGGGCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCTTCCTTCEEE
T ss_pred ccCHHhhCCCcccccccccCCCceEEEEEEEEEEEEEcCCCCEEccCCeEECCCCeEEEEEEeccccCcccccCCCCEEE
Confidence 0111 11 467889999988 0 000 111110 00011
Q ss_pred -CeeeEEEeccCcCCCcccccCC---CCCCCCCEEEEcCCC
Q 048797 180 -MIYNSTVFGPTLDAYDKLFTGH---PELQVGNWLVFSQIG 216 (240)
Q Consensus 180 -~~~~~~i~G~~C~~~D~l~~~~---p~l~~GD~l~~~~~G 216 (240)
...++.|+|+.|+ |.+..+. |++++||.|+|.+.+
T Consensus 288 i~g~~~~ivG~vcm--D~~~vd~~~~~~~~~GD~v~l~~~~ 326 (357)
T 1rcq_A 288 IDGKPGRLVGRVSM--DMLTVDLTDHPQAGLGSRVELWGPN 326 (357)
T ss_dssp ETTEEEEBCSCCCS--SCEEEECTTCTTCCTTCEEEEESSS
T ss_pred ECCEEeEEeeEEec--ceEEEECCCCCCCCCCCEEEEECCC
Confidence 1256889999997 8888766 689999999999865
No 27
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni}
Probab=99.44 E-value=7.3e-13 Score=117.84 Aligned_cols=197 Identities=12% Similarity=0.057 Sum_probs=119.3
Q ss_pred ccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc--cc---cCCCCcEEEEEeeCCCCCCcccCCCCCCCCCC
Q 048797 3 NALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK--GK---WHPRCDLLIRIKALDDCKAVCPQAQDSKCGAN 75 (240)
Q Consensus 3 l~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~--~~---~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~ 75 (240)
+++|++++.+ +.|+ ++.++++.+++.++... |+++++ .+ .+ .++|.|+|+. . .+|||++
T Consensus 75 ~~aG~~~~il-~~g~-~~~~~~~~~~~~~i~~~vds~~~l~~l~~~a~~~-~~~V~l~vdt-G----------~~R~G~~ 140 (380)
T 3co8_A 75 RQAGIDDFIL-ILGP-IDVKYAPIASKYHFLTTVSSLDWLKSADKILGKE-KLSVNLAVDT-G----------MNRIGVR 140 (380)
T ss_dssp HHTTCCCCEE-ECSC-CCGGGHHHHHHTTCEEEECCHHHHHHHHHHCTTC-CEEEEEEBCS-S----------SCSSSBC
T ss_pred HhcCCCCCEE-EECC-CCHHHHHHHHHCCCEEEECCHHHHHHHHHhcccC-CceEEEEEcC-C----------CCCCCCC
Confidence 4578876644 5577 89999999999998654 999988 22 33 5677887776 2 1499999
Q ss_pred -HHHHHHHHHHHHh--CCCcEEEEEEeeCCCCCChHH-HHHHHHHHHHHHHHHHHhCCCCCCCCcc---c--hhHHHHhh
Q 048797 76 -LAEIGALLEAALA--SQLGVVGISFHIGSGATDFGA-FDGAISAAKAVFDAASARHGLTDQMRAK---H--WRRGRADC 146 (240)
Q Consensus 76 -~~~~~~~l~~a~~--~~l~~~Glh~H~gS~~~~~~~-~~~~i~~~~~~~~~l~~~~g~~~~~~~l---d--~i~~~l~~ 146 (240)
++++.++++.+++ .++++.|||+|.+|+....+. +.+.++...++ .+. +. ....+ | .+-..-+.
T Consensus 141 ~~ee~~~~~~~i~~~~~~l~l~Gl~tH~~~~~~~~~~~~~~q~~~f~~~----~~~-~~--~~~~~~~~nS~g~~~~~~~ 213 (380)
T 3co8_A 141 SKKDLKDEIEFLQEHSDHFSYDGIFTHFASSDNPDDHYFQRQKNRWYEL----IDG-LI--MPRYVHVMNSGAAMYHSKE 213 (380)
T ss_dssp SHHHHHHHHHHHHHCTTTEEEEEEECCCC---------CHHHHHHHHHH----HTT-SC--CCSEEECBCHHHHHHCGGG
T ss_pred CHHHHHHHHHHHHhhCCCceEEEEEEcCCCCCCCCcHHHHHHHHHHHHH----Hhc-cC--CCCcEEEeCCHHHhcCccc
Confidence 9999999998887 489999999999997532222 22333332222 222 22 12222 2 11100011
Q ss_pred -------------hcCCCC--------eeeeCceEEEEe-C----------------c---------eeeeeccC---CC
Q 048797 147 -------------HFGAGP--------FPRDSAFTLATR-N----------------C---------RESSACSN---RT 176 (240)
Q Consensus 147 -------------~~~~~p--------~lva~a~~l~t~-n----------------~---------~~P~~~~~---~~ 176 (240)
.++..| +...++++|+++ . + ++|+=+.. +.
T Consensus 214 ~~~~~~~vR~G~~lyG~~p~~~~~~~~~~l~pa~~l~a~Vi~vk~~~~g~~v~yg~~~~~~~~~~~a~v~~Gy~Dg~~r~ 293 (380)
T 3co8_A 214 LPGCNSIARVGTVVYGVEPSEGVLGPIDKLKPVFELKSALTFVKKIPAGEGISYGSKFVTSRDTWIGTLPIGYGDGWLAE 293 (380)
T ss_dssp CTTSCSEEEESTTTTTCCTTTTSSSCGGGSCCCEEEEEECSEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCGG
T ss_pred ccCCCceEcccHhhhCcCCCccccccccCcceeEEEEEEEEEEEEcCCCCeEeeCCEEECCCCCEEEEEecCcccccccc
Confidence 111111 457899999998 0 0 01211100 00
Q ss_pred CC-C----CeeeEEEeccCcCCCcccccCC-CCCCCCCEEEEcCC-Ccccccc
Q 048797 177 CT-G----MIYNSTVFGPTLDAYDKLFTGH-PELQVGNWLVFSQI-GACTAVY 222 (240)
Q Consensus 177 ~~-~----~~~~~~i~G~~C~~~D~l~~~~-p~l~~GD~l~~~~~-GAY~~~~ 222 (240)
-+ . ....+.|+|+.|+ |.+..++ .++++||+++|.+. |+|+.+.
T Consensus 294 l~~~~v~i~g~~~~ivG~vcm--D~~~vdv~~~~~~GD~v~l~g~~~~~~~~~ 344 (380)
T 3co8_A 294 YQDFQLLIDGQKCRQVGQIAM--DQMMVALPHEYPIGTEVTLIGKSGKYENTL 344 (380)
T ss_dssp GTTCEEEETTEEEEEESCCCS--SCEEEEESSCCCTTCEEEEEEEETTEEECH
T ss_pred cCCCeEEECCEEeEEeccccc--ceEEEECCCCCCCCCEEEEEeCCCCCCCCH
Confidence 00 0 1256889999995 9999888 58899999999884 8887763
No 28
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A*
Probab=99.28 E-value=1.4e-11 Score=109.49 Aligned_cols=193 Identities=11% Similarity=0.116 Sum_probs=120.1
Q ss_pred ccCCCCCCcEE-EcCCCCCHHHHHHHHHCCCCcc--CHHHHc--c--ccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCC
Q 048797 3 NALGVSGKSVS-LTVALRNENGLAEALGSNFDYA--SQAEIK--G--KWHPRCDLLIRIKALDDCKAVCPQAQDSKCGAN 75 (240)
Q Consensus 3 l~~G~~~~~Ii-~~gp~K~~~~l~~A~~~gv~~~--s~~EL~--~--~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~ 75 (240)
.++|+++ +|+ +.|+ ++.++++.+++.++... |.++++ . +.++..+|.|+||. . .+|||++
T Consensus 87 r~~G~~~-~Il~~~g~-~~~~~~~~~~~~~i~~~vds~~~l~~l~~a~~~~~~~V~l~vdt-G----------m~R~G~~ 153 (379)
T 2rjg_A 87 RAGGITK-PVLLLEGF-FDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWMKLDT-G----------MHRLGVR 153 (379)
T ss_dssp HHTTCCS-CEEETTCC-SCGGGHHHHHHTTEEEEECSHHHHHHHHHCCCSSCBCEEEEBCS-S----------CCSSSBC
T ss_pred HhCCcCC-CEEEEECC-CCHHHHHHHHHcCcEEEECCHHHHHHHHhhCCCCCeEEEEEECC-C----------CCccCCC
Confidence 3568865 677 6666 89999999999987554 999998 2 23355789999987 3 1399999
Q ss_pred HHHHHHHHHHHHhC-C-CcEEEEEEeeCCCCCChHH-HHHHHHHHHHHHHHHHHhCCCCCCCCccc--hhHHHHhh----
Q 048797 76 LAEIGALLEAALAS-Q-LGVVGISFHIGSGATDFGA-FDGAISAAKAVFDAASARHGLTDQMRAKH--WRRGRADC---- 146 (240)
Q Consensus 76 ~~~~~~~l~~a~~~-~-l~~~Glh~H~gS~~~~~~~-~~~~i~~~~~~~~~l~~~~g~~~~~~~ld--~i~~~l~~---- 146 (240)
++|+.++++.+++. + +++.|||+|.+++....+. +.+.++...++ .+.+.. ++...| .+-...+.
T Consensus 154 ~~e~~~~~~~i~~~~~~l~l~Gl~tH~~~~d~~~~~~~~~q~~~f~~~----~~~l~~--~~s~gnS~~~~~~~~~~~~~ 227 (379)
T 2rjg_A 154 PEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTF----CEGKPG--QRSIAASGGILLWPQSHFDW 227 (379)
T ss_dssp HHHHHHHHHHHTTCSSBCSSCEEECCCSSTTCTTSTHHHHHHHHHHHH----HTTCCS--CEECCCHHHHHHCGGGCSSE
T ss_pred HHHHHHHHHHHHhCCCcEEEEEEEEECCccCCCCcHHHHHHHHHHHHH----HhccCC--CeEEEECcchhcCcccCCCE
Confidence 99999999988765 8 9999999999997643322 23333333332 222322 122223 11000011
Q ss_pred ------hcCCCC---------eeeeCceEEEEe---------C--------cee---------eeeccC---CCCC--C-
Q 048797 147 ------HFGAGP---------FPRDSAFTLATR---------N--------CRE---------SSACSN---RTCT--G- 179 (240)
Q Consensus 147 ------~~~~~p---------~lva~a~~l~t~---------n--------~~~---------P~~~~~---~~~~--~- 179 (240)
.|+..| +...++++|.++ + +.. |+=+.. +.-+ .
T Consensus 228 vR~G~~lyG~~p~~~~~~~~~~~l~pa~~l~a~Vi~vk~~~~G~~v~yg~~~~~~~~~~ia~v~~GyaDG~~r~l~~~~~ 307 (379)
T 2rjg_A 228 VRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAAPSGTP 307 (379)
T ss_dssp ECCCGGGGTCCSSSSSCCGGGGTCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSCEEEEEESCCTTTTCCTTCCTTCE
T ss_pred ECccHHHHCCCcccccccccccCCceEEEEEEEEEEEEEcCCCCEEeeCCEEECCCCcEEEEEeeecccCcccccCCCcE
Confidence 011111 346788888888 0 000 111110 0001 1
Q ss_pred ---CeeeEEEeccCcCCCcccccCC---CCCCCCCEEEEcCCC
Q 048797 180 ---MIYNSTVFGPTLDAYDKLFTGH---PELQVGNWLVFSQIG 216 (240)
Q Consensus 180 ---~~~~~~i~G~~C~~~D~l~~~~---p~l~~GD~l~~~~~G 216 (240)
..+.+.|+|+.|+ |.+..+. |++++||.++|.+.+
T Consensus 308 v~i~g~~~~ivG~vcm--D~~~vdv~~~~~~~~GD~v~l~g~~ 348 (379)
T 2rjg_A 308 VLVNGREVPIVGRVAM--DMICVDLGPQAQDKAGDPVILWGEG 348 (379)
T ss_dssp EEETTEEEEBCSCCCS--SCEEEECCTTCCCCTTCEEEEEBTT
T ss_pred EEECCEEeeEeeeecc--ccEEEECCCCCCCCCCCEEEEECCC
Confidence 1256889999997 8887766 689999999988754
No 29
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A*
Probab=98.99 E-value=1e-09 Score=97.10 Aligned_cols=119 Identities=15% Similarity=0.222 Sum_probs=87.0
Q ss_pred ccCCCCCCcEEEcCCCCCHHHHHHHHH-----CCCCcc--CHHHHc--c----ccCCCCcEEEEEeeCCCCCCcccCCCC
Q 048797 3 NALGVSGKSVSLTVALRNENGLAEALG-----SNFDYA--SQAEIK--G----KWHPRCDLLIRIKALDDCKAVCPQAQD 69 (240)
Q Consensus 3 l~~G~~~~~Ii~~gp~K~~~~l~~A~~-----~gv~~~--s~~EL~--~----~~~~~~~v~lRi~~~~~~~~~~~~~~~ 69 (240)
.++|++ +|+|..+.+ +++++.+++ .++.+. |+++++ . +.++..+|.|||++ + .
T Consensus 76 ~~~G~~--~ii~~~~~~-~~~l~~~~~l~~~~~~i~~~vds~~~l~~l~~~a~~~~~~~~V~l~vd~-g----------~ 141 (376)
T 3anu_A 76 ADGGFD--DILLAYPVP-TARLEECAGLARRLDAFHVLLDRPEALASLRQRPLGHGKRWLVWLKLDC-G----------N 141 (376)
T ss_dssp HHTTCE--EEEEEEECC-GGGHHHHHHHHHHSSCEEEEECCHHHHHHHHTSCCCTTCCEEEEEEECC-C-----------
T ss_pred HHCCCC--eEEEECCCc-HHHHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHHHhCCCceEEEEEECC-C----------C
Confidence 456876 677655667 889999988 787554 999998 2 33456789999987 3 1
Q ss_pred CCCCCCHHH--HHHHHHHHHhC---CCcEEEEEEeeCC-CC-CChH---HHH-HHHHHHHHHHHHHHHhCCCCCCCCccc
Q 048797 70 SKCGANLAE--IGALLEAALAS---QLGVVGISFHIGS-GA-TDFG---AFD-GAISAAKAVFDAASARHGLTDQMRAKH 138 (240)
Q Consensus 70 skFG~~~~~--~~~~l~~a~~~---~l~~~Glh~H~gS-~~-~~~~---~~~-~~i~~~~~~~~~l~~~~g~~~~~~~ld 138 (240)
+|||+++++ +.++++.+++. ++++.|+|+|.|| +. .|.. .+. +.++.+.++.+. .++.|+ ++.+++
T Consensus 142 ~R~G~~~~~~~~~~l~~~i~~~~~~~l~l~Gl~~h~g~~~~~~d~~~~~~~~~~~~~~~~~~~~~-l~~~g~--~~~~vs 218 (376)
T 3anu_A 142 GRAGVRPTDPAALELAQAIANDAPEEVTLVGVYAHCGNTYGCSGADTIQAIARTTTNAVLSFVAA-LRQAGV--PCPQAS 218 (376)
T ss_dssp -CSSBCTTSHHHHHHHHHHHHSCTTTEEEEEEEECCGGGC-CCSHHHHHHHHHHHHHHHHHHHHH-HHHTTC--CCCEEE
T ss_pred CcCCCCCCchhHHHHHHHHhCCCCCceEEEEEEeeCCcccCCCCHHHHHHHHHHHHHHHHHHHHH-HHhcCC--CCCEEE
Confidence 399999887 88988877667 8999999999998 33 3432 243 367777777777 455688 888888
No 30
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis}
Probab=98.94 E-value=1.3e-08 Score=90.24 Aligned_cols=119 Identities=18% Similarity=0.152 Sum_probs=87.2
Q ss_pred ccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc--cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHH
Q 048797 3 NALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK--GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAE 78 (240)
Q Consensus 3 l~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~--~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~ 78 (240)
.++|++++.+++ |+. +.++++.+++.++... |.++++ .+.++..+|.|+|+. . .+|||++ +|
T Consensus 73 r~~G~~~~ilvl-g~~-~~~~~~~~~~~~i~~~v~s~~~l~~l~~~~~~~~v~lkvdt-G----------m~R~G~~-~e 138 (374)
T 4ecl_A 73 RKYGISSEILIL-GYT-SPSRAKELCKYELTQTLIDYRYSLLLNKQGYDIKAHIKIDT-G----------MHRLGFS-TE 138 (374)
T ss_dssp HHTTCCSEEEEC-SCC-CGGGHHHHHHTTCEEEECCHHHHHHHHTTCCCEEEEEEEES-S----------SCSSSEE-SS
T ss_pred HhcCCCCCEEEE-eCC-CHHHHHHHHHCCCEEEECCHHHHHHHHhcCCCccEEEEEcC-C----------CCcCccC-HH
Confidence 357886655555 553 6788999999987655 999998 333667889999997 3 1399999 88
Q ss_pred HHHHHHHHHhC-CCcEEEEEEeeCCCCC----ChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc
Q 048797 79 IGALLEAALAS-QLGVVGISFHIGSGAT----DFGAFDGAISAAKAVFDAASARHGLTDQMRAKH 138 (240)
Q Consensus 79 ~~~~l~~a~~~-~l~~~Glh~H~gS~~~----~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld 138 (240)
+.++++.+++. ++++.|++.|.+++.. +.....+.++...++.+. .++.|+ ++.+++
T Consensus 139 ~~~~~~~i~~~~~l~l~Gl~tH~~~ad~~~~~~~~~~~~q~~~f~~~~~~-l~~~g~--~~~~~~ 200 (374)
T 4ecl_A 139 DKDKILAAFSLKHIKVAGIFTHLCAADSLEENDVAFTNKQIGSFYKVLDW-LKSSGL--NIPKVH 200 (374)
T ss_dssp CHHHHHHHTTCTTEEEEEEECCCSCTTCCSHHHHHHHHHHHHHHHHHHHH-HHHTTC--CCCEEE
T ss_pred HHHHHHHHHhCCCceEEEEEEECCccCcccCcCcHHHHHHHHHHHHHHHH-HHHcCC--CCCeEE
Confidence 88888877664 7999999999999854 222345666666777776 445688 777776
No 31
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703}
Probab=98.85 E-value=7.6e-09 Score=88.25 Aligned_cols=111 Identities=12% Similarity=0.053 Sum_probs=81.4
Q ss_pred CCcEEE--cCCCCCHHHHHHHHH-CCCCcc--CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHH
Q 048797 9 GKSVSL--TVALRNENGLAEALG-SNFDYA--SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLA 77 (240)
Q Consensus 9 ~~~Ii~--~gp~K~~~~l~~A~~-~gv~~~--s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~ 77 (240)
+..|.| .|+.++. +++.+++ .++... |.++++ .+.++.++|.||||+ + ...+|||++++
T Consensus 112 ~~~i~~~~iG~~~~~-~~~~~~~~~~l~~~Vds~~~l~~L~~~a~~~~~~~~V~lkVdt-G--------me~~R~G~~~e 181 (282)
T 3cpg_A 112 AEHIPFHLIGQLQSN-KIGKVLPVVDTIESVDSIDLAEKISRRAVARGITVGVLLEVNE-S--------GEESKSGCDPA 181 (282)
T ss_dssp CEEECEEECSCCCGG-GHHHHTTTCSEEEEECCHHHHHHHHHHHHHHTCCEEEEEEBCC-S--------SCTTSSSBCGG
T ss_pred ccceeeeecChhHHH-HHHHHHHhCCEEEEeCCHHHHHHHHHHHHhcCCCceEEEEEEC-C--------CCCCCCCcCHH
Confidence 445654 5877654 5888776 676433 888888 234567899999998 3 11249999999
Q ss_pred HHHHHHHHHHhC-CCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 78 EIGALLEAALAS-QLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 78 ~~~~~l~~a~~~-~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
++.++++.+++. ++++.|||+|.+++. +++.+.+..+...++.+.+.+..|+
T Consensus 182 e~~~l~~~i~~~~~l~l~Gl~th~~~~~-~~~~~~~~~~~l~~~~~~l~~~~g~ 234 (282)
T 3cpg_A 182 HAIRIAQKIGTLDGIELQGLMTIGAHVH-DETVIRRGFSHLRKTRDLILASGEP 234 (282)
T ss_dssp GHHHHHHHHHTCTTEEEEEEECCCCCSS-CHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHhCCCceEEeEEEECCCCC-CHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999988765 799999999999875 6766666777777777775444464
No 32
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=98.67 E-value=1.9e-07 Score=84.12 Aligned_cols=121 Identities=16% Similarity=0.174 Sum_probs=90.1
Q ss_pred ccCCCCCCcEEEcCCCCCHHHHHHHHH----CCCCc---c-CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCCC
Q 048797 3 NALGVSGKSVSLTVALRNENGLAEALG----SNFDY---A-SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQAQ 68 (240)
Q Consensus 3 l~~G~~~~~Ii~~gp~K~~~~l~~A~~----~gv~~---~-s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~~ 68 (240)
.++|+ ++|++.+|...+++++.+.+ .++.+ + |.++++ .+.++..+|+|+||+ +
T Consensus 110 ~~~Gi--~~ill~~~~~~~~~~~~~~~l~~~~~~~l~~~Vds~~~l~~L~~~a~~~~~~~~V~l~Vdt-G---------- 176 (426)
T 3gwq_A 110 YHGGV--SRVLMANQLVGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKSVNKQLQVLLELGV-P---------- 176 (426)
T ss_dssp HHTTC--CEEEECSCCCSHHHHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCCEEEEEEECC-T----------
T ss_pred HHCCC--CeEEEECCcCCHHHHHHHHHHhhcCCccEEEEeCCHHHHHHHHHHHHHCCCeeEEEEEeCC-C----------
Confidence 45687 58999999988888887653 23432 2 888887 234667899999997 3
Q ss_pred CCCCCCC-HHHHHHHHHHHHhC--CCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCC-CCCCCccc
Q 048797 69 DSKCGAN-LAEIGALLEAALAS--QLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGL-TDQMRAKH 138 (240)
Q Consensus 69 ~skFG~~-~~~~~~~l~~a~~~--~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~-~~~~~~ld 138 (240)
.+|||+. .+++.++++.+++. ++++.|||+|.|+. .+++.+++.++.+.++++.+.+. |+ ..++.+|+
T Consensus 177 ~~R~Gv~~~~e~~~l~~~i~~~~~~l~l~Gl~th~g~~-~~~~~~~~~~~~l~~l~~~L~~~-g~~~~~~~~lS 248 (426)
T 3gwq_A 177 GGRTGVRDAAQRNAVLEAITRYPDTLKLAGVELYEGVL-KEEHEVREFLQSAVAVTRELVEQ-ERFARAPAVLS 248 (426)
T ss_dssp TSSSSBCSHHHHHHHHHHHHTSTTTEEEEEEEECGGGC-CSHHHHHHHHHHHHHHHHHHHHH-TCCSSSSEEEE
T ss_pred CCcCCCCCHHHHHHHHHHHHcCCCCEEEEeEEEEcccc-CCHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCEEE
Confidence 1399997 48999999888775 79999999999995 57888888888888888885443 32 00456676
No 33
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A*
Probab=98.37 E-value=3.4e-06 Score=70.38 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=82.8
Q ss_pred cEEEcCCCCCHHHHHHHH-HCCCCc-c-CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHH
Q 048797 11 SVSLTVALRNENGLAEAL-GSNFDY-A-SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGA 81 (240)
Q Consensus 11 ~Ii~~gp~K~~~~l~~A~-~~gv~~-~-s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~ 81 (240)
++.|-|+..+ +.++.++ ..++.. + |.++++ .+.++..+|.|+||+ +. ..+|||++++++.+
T Consensus 79 ~w~~iG~lq~-nk~~~~~~~~~~i~sVds~~~a~~l~~~a~~~~~~~~V~lqVnt-G~--------e~~R~G~~~ee~~~ 148 (245)
T 3sy1_A 79 EWNFAGPLQS-NKSRLVAEHFDWCITIDRLRIATRLNDQRPAELPPLNVLIQINI-SD--------ENSKSGIQLAELDE 148 (245)
T ss_dssp EEEECSCCCG-GGHHHHHHHCSEEEEECCHHHHHHHHHHSCTTSCCEEEEEEBCC-SC--------TTCCSSBCGGGHHH
T ss_pred EEeecCCCCh-HHHHHHHHHCCEEEecCCHHHHHHHHHHHHHcCCCceEEEEEEC-CC--------CcCCcCCCHHHHHH
Confidence 3467788653 3455554 456532 2 777666 234567899999998 31 13499999999999
Q ss_pred HHHHHHhC-CCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc
Q 048797 82 LLEAALAS-QLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH 138 (240)
Q Consensus 82 ~l~~a~~~-~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld 138 (240)
+++.+.++ +|++.||+.| +++..+++.++++.+.++++++.|.+. +. .++.|+
T Consensus 149 l~~~i~~~~~l~l~Glmt~-~~~~~d~~~~~~~f~~l~~l~~~l~~~-~~--~~~~LS 202 (245)
T 3sy1_A 149 LAAAVAELPRLRLRGLSAI-PAPESEYVRQFEVARQMAVAFAGLKTR-YP--HIDTLA 202 (245)
T ss_dssp HHHHHTTCTTEEEEEEECC-CCCCSCHHHHHHHHHHHHHHHHHHHTT-ST--TCCEEE
T ss_pred HHHHHHcCCCCeEEEEEEe-CCCCCCHHHHHHHHHHHHHHHHHHHHh-CC--CCCEEe
Confidence 99887765 7999999655 577788999999999999999885443 45 677777
No 34
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis}
Probab=98.24 E-value=1.1e-06 Score=77.69 Aligned_cols=116 Identities=12% Similarity=0.202 Sum_probs=79.4
Q ss_pred ccCCCCCCcEEEcCCCCCHHHHHHHH-----HCCCCcc--CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCCCC
Q 048797 3 NALGVSGKSVSLTVALRNENGLAEAL-----GSNFDYA--SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQAQD 69 (240)
Q Consensus 3 l~~G~~~~~Ii~~gp~K~~~~l~~A~-----~~gv~~~--s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~~~ 69 (240)
.++|++ ++++..+.. .++++.++ +.++.+. |.++++ .+.++..+|.|+|+. + ..
T Consensus 78 ~~~Gi~--~~il~~~~~-~~~~~~~~~l~~~~~~l~~~Vds~~~l~~l~~~a~~~~~~~~V~l~vdt-G--------~~- 144 (376)
T 3llx_A 78 AKAGYT--DLLYAVGIA-PAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAEFGQDFSVFIEIDS-D--------DH- 144 (376)
T ss_dssp HHTTCC--EEEEEEECC-GGGHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCCCEEEEEBCS-S--------SS-
T ss_pred HhCCCC--cEEEeCCCC-HHHHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEEECC-C--------CC-
Confidence 346775 455554544 77888887 3455443 888887 234667899999987 3 12
Q ss_pred CCCCCCHHH--HHHHHHHHHhCCCcEEEEEEeeCCCCC-C-h----HHHHHHHHHHHHHHHHHHHhCCCCCCCCccc
Q 048797 70 SKCGANLAE--IGALLEAALASQLGVVGISFHIGSGAT-D-F----GAFDGAISAAKAVFDAASARHGLTDQMRAKH 138 (240)
Q Consensus 70 skFG~~~~~--~~~~l~~a~~~~l~~~Glh~H~gS~~~-~-~----~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld 138 (240)
|||+.+++ +.++++.+ ++++.|+++|.|+... + + ..+.+.++.+.++.+. .++.|+ ++.+++
T Consensus 145 -R~G~~~~~~~l~~~~~~l---~l~l~Gl~th~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~-l~~~g~--~~~~vs 214 (376)
T 3llx_A 145 -RGGIKPSDSKLLTIAKTL---GEHFTGLMTHAGGSYACNTEQGLKNFAKQECDAVRIARNN-LETAGI--HCAITS 214 (376)
T ss_dssp -SSCBCTTCTHHHHHHHHH---GGGEEEEECCCGGGGGCCSHHHHHHHHHHHHHHHHHHHHH-HHHTTC--CCCEEE
T ss_pred -CCCCCCchHHHHHHHHHh---CCEEeEEEEecccccCCCCHHHHHHHHHHHHHHHHHHHHH-HHhcCC--CCCEEE
Confidence 99999886 56665544 8999999999998643 2 2 2245666666677766 445688 788887
No 35
>3mub_A Alanine racemase; alpha/beta barrel, extended beta-strand domain, pyridoxal PH cofactor, carba lysine, isomerase; HET: LLP KCX; 2.00A {Streptococcus pneumoniae} PDB: 3s46_A*
Probab=98.23 E-value=6.2e-06 Score=72.78 Aligned_cols=104 Identities=15% Similarity=0.154 Sum_probs=73.2
Q ss_pred cCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc--c----ccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCC
Q 048797 4 ALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK--G----KWHPRCDLLIRIKALDDCKAVCPQAQDSKCGAN 75 (240)
Q Consensus 4 ~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~--~----~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~ 75 (240)
++|++.+-+++ |+. +.++++.++++++... |.++++ . +. +..+|.|+|+. . .+|||++
T Consensus 75 ~~G~~~~ilvl-g~~-~~~~~~~~~~~~l~~~V~s~~~l~~l~~~a~~~-~~~~V~lkvdt-G----------m~R~G~~ 140 (367)
T 3mub_A 75 QAGLSKPILIL-GVS-EIEAVALAKEYDFTLTVAGLEWIQALLDKEVDL-TGLTVHLKIDS-G----------MGRIGFR 140 (367)
T ss_dssp HTTCCSCEEEE-EEC-CGGGHHHHHHTTEEEEECCHHHHHHHHHTTCCC-TTCEEEEEECS-S----------CCSSSBC
T ss_pred HcCCCCCEEEE-cCC-CHHHHHHHHHcCCEEEECCHHHHHHHHHHHHhc-CCeeEEEEECC-C----------CCcCCCC
Confidence 47887655555 553 6778999999987654 888887 2 22 56889999987 2 1399999
Q ss_pred H-HHHHHHHHHHHhCCCcEEEEEEeeCCCCC-ChHHHHHHHHHHHHHH
Q 048797 76 L-AEIGALLEAALASQLGVVGISFHIGSGAT-DFGAFDGAISAAKAVF 121 (240)
Q Consensus 76 ~-~~~~~~l~~a~~~~l~~~Glh~H~gS~~~-~~~~~~~~i~~~~~~~ 121 (240)
+ +|+.++++.+++.++++.|++.|.++... +.....+.++...++.
T Consensus 141 ~~ee~~~~~~~i~~~~l~l~Gl~tH~a~ad~~~~~~~~~Q~~~F~~~~ 188 (367)
T 3mub_A 141 EASEVEQAQDLLQQHGVCVEGIFTHFATADEESDDYFNAQLERFKTIL 188 (367)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEECCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHccCCcEEEEEEEEccCCCCCCCHHHHHHHHHHHHHH
Confidence 8 99999888765577999999999988642 3222334444444433
No 36
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae}
Probab=98.18 E-value=1.1e-06 Score=77.76 Aligned_cols=88 Identities=16% Similarity=0.100 Sum_probs=65.8
Q ss_pred cCC-CCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCC
Q 048797 4 ALG-VSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGA 74 (240)
Q Consensus 4 ~~G-~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~ 74 (240)
++| ++.+-+++.++ +.++++.+++.++... |.++++ .+.++..+|.|+|+. . .+|||+
T Consensus 87 ~ag~~~~~ilvl~~~--~~~~~~~~~~~~i~~~V~s~~~l~~l~~~a~~~~~~~~V~lkVdt-G----------m~R~G~ 153 (376)
T 3kw3_A 87 AVLPENVMIALLNGF--PHKAEEFVAQSGIIPLLNSWSTIEDWQTLCQKKNKKFPAIIQVDT-N----------MSRLGL 153 (376)
T ss_dssp HHSCSSCEEEETTCC--CTTCHHHHHHTTCEEEECSHHHHHHHHHHHHHHTCCCEEEEEBCS-S----------CCSSSB
T ss_pred hcCCCCCCEEEEeCC--CHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHcCCCeEEEEEECC-C----------CCcccC
Confidence 356 65554445554 4567888999887654 888887 245677899999987 2 139999
Q ss_pred CHHHHHHHHHHHHh-CCCcEEEEEEeeCCCC
Q 048797 75 NLAEIGALLEAALA-SQLGVVGISFHIGSGA 104 (240)
Q Consensus 75 ~~~~~~~~l~~a~~-~~l~~~Glh~H~gS~~ 104 (240)
+++|+.++++.+++ .++++.|++.|.++..
T Consensus 154 ~~~e~~~l~~~i~~~~~l~l~Gl~tH~a~ad 184 (376)
T 3kw3_A 154 DKKELQKLIKNPTIFEKAEIKYILSHLANGE 184 (376)
T ss_dssp CHHHHHHHHHCCTHHHHSEEEEEECCCSSTT
T ss_pred CHHHHHHHHHHHHhCCCCcEEEEEEECCCCC
Confidence 99999998887654 4799999999998854
No 37
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Probab=98.17 E-value=3.1e-06 Score=74.77 Aligned_cols=89 Identities=9% Similarity=0.087 Sum_probs=68.2
Q ss_pred ccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc-------cccCCCCcEEEEEeeCCCCCCcccCCCCCCCC
Q 048797 3 NALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK-------GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCG 73 (240)
Q Consensus 3 l~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~-------~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG 73 (240)
.++|++++ |++-|+ ++.++++.+++.++... |.++++ .+.++..+|.|+|+. . .+|||
T Consensus 75 r~~G~~~~-Ilvlg~-~~~~~~~~~~~~~i~~~V~s~~~l~~l~~~~a~~~~~~~~V~lkvdt-G----------m~R~G 141 (371)
T 3e5p_A 75 REAGVQDP-ILILSV-VDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNTPLRVHLKVDT-G----------MGRIG 141 (371)
T ss_dssp HTTTCCSC-EEEEEE-CCGGGHHHHHHHTCEEEECCHHHHHHHHHHHCSCCSCCBCEEEEBCS-S----------SCSSS
T ss_pred HhcCCCCC-EEEEcC-CCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHcCCceEEEEEECC-C----------CCcCC
Confidence 35788754 555576 57889999999887654 777764 234566889999987 2 13999
Q ss_pred CCH-HHHHHHHHHHHhC-CCcEEEEEEeeCCCC
Q 048797 74 ANL-AEIGALLEAALAS-QLGVVGISFHIGSGA 104 (240)
Q Consensus 74 ~~~-~~~~~~l~~a~~~-~l~~~Glh~H~gS~~ 104 (240)
+++ +|+.++++.+++. ++++.|+++|.++..
T Consensus 142 ~~~~ee~~~~~~~i~~~~~l~l~Gl~tH~a~ad 174 (371)
T 3e5p_A 142 FLTPEETKQAVRFVQSHKEFLWEGIFTHFSTAD 174 (371)
T ss_dssp BCSSHHHHHHHHHHHHSTTBCCCEEECCCSCTT
T ss_pred CCCHHHHHHHHHHHHhCCCccEEEEEEEcCCCC
Confidence 999 9999999887765 799999999999864
No 38
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A
Probab=98.12 E-value=6.7e-06 Score=72.93 Aligned_cols=89 Identities=17% Similarity=0.199 Sum_probs=64.5
Q ss_pred ccCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc------cccCC-CCcEEEEEeeCCCCCCcccCCCCCCCC
Q 048797 3 NALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK------GKWHP-RCDLLIRIKALDDCKAVCPQAQDSKCG 73 (240)
Q Consensus 3 l~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~------~~~~~-~~~v~lRi~~~~~~~~~~~~~~~skFG 73 (240)
.++|++..-+++ |+. +.++++.+++.++... |.++++ .+.++ ..+|.|+|+. . -+|||
T Consensus 74 r~aGi~~~ilvl-g~~-~~~~~~~~~~~~i~~~V~s~~~l~~l~~~a~~~~~~~~~V~lkvDt-G----------m~R~G 140 (382)
T 4a3q_A 74 RMHGITAKILVL-GVL-PAKDIDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKLDT-G----------MGRLG 140 (382)
T ss_dssp HTTTCCSEEEEC-SCC-CGGGHHHHHHTTCBEEECCHHHHHHHHHTCCTTCCSCEEEEEEBCS-S----------SSSSS
T ss_pred HhCCCCCCEEEE-eCC-CHHHHHHHHHcCCEEEECCHHHHHHHHHHHHHcCCCceeEEEEECC-C----------CCcCC
Confidence 356887655555 653 6788999999998655 998888 22344 6788888876 2 13999
Q ss_pred CCHHH-HHHHHHHHHhC-CCcEEEEEEeeCCCC
Q 048797 74 ANLAE-IGALLEAALAS-QLGVVGISFHIGSGA 104 (240)
Q Consensus 74 ~~~~~-~~~~l~~a~~~-~l~~~Glh~H~gS~~ 104 (240)
+++++ +.++++.+++. ++++.|++.|.++..
T Consensus 141 ~~~~e~~~~~~~~i~~~~~l~l~Gl~tH~a~ad 173 (382)
T 4a3q_A 141 IKDTNTYQEVIEIIQQYEQLVFEGVFTHFACAD 173 (382)
T ss_dssp BCCHHHHHHHHHHHHHCTTEEEEEEECCC----
T ss_pred CChHHHHHHHHHHHHhCCCceEEEEEEECcCCC
Confidence 99986 89998887664 799999999998853
No 39
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1}
Probab=97.48 E-value=0.00036 Score=62.03 Aligned_cols=87 Identities=14% Similarity=0.133 Sum_probs=64.1
Q ss_pred cCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc--CHHHHc--ccc-CCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHH
Q 048797 4 ALGVSGKSVSLTVALRNENGLAEALGSNFDYA--SQAEIK--GKW-HPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAE 78 (240)
Q Consensus 4 ~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~--s~~EL~--~~~-~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~ 78 (240)
++|++.. |++-|+. +.++++.+++.++... |.++++ .+. + ..+|.|.|+. . -+|+|+.+++
T Consensus 77 ~aGi~~~-Ilvlg~~-~~~~~~~~~~~~l~~~V~s~~~l~~l~~~~~-~~~V~lkvDt-G----------m~R~G~~~~e 142 (395)
T 3hur_A 77 QADLTLP-IWVLGAW-DYSDLKLFIDHDIVITIPSLAWLQNLPDFEG-TLKVSLAIDT-G----------MTRIGFDKAD 142 (395)
T ss_dssp HTTCCSC-EEESSCC-CGGGHHHHHHTTEEEEECCHHHHHTCCCCSS-CEEEEEEBCC-S----------SCSSSBCCHH
T ss_pred hcCCCCC-EEEEcCC-CHHHHHHHHHcCCEEEECCHHHHHHHHHhcC-CCcEEEEEcC-C----------CCCcCCChHH
Confidence 4677654 5555765 6778999999887654 999888 332 3 5667777765 2 2399999987
Q ss_pred -HHHHHHHHHhC-CCcEEEEEEeeCCCC
Q 048797 79 -IGALLEAALAS-QLGVVGISFHIGSGA 104 (240)
Q Consensus 79 -~~~~l~~a~~~-~l~~~Glh~H~gS~~ 104 (240)
+.++++.++++ ++++.|+..|.++.-
T Consensus 143 ~~~~~~~~i~~~~~l~l~Gl~TH~a~ad 170 (395)
T 3hur_A 143 EISAAKKIIDKNPQLDLFSVYTHFATAD 170 (395)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECCCTTTT
T ss_pred HHHHHHHHHHhCCCceEEEEEEeCcCCC
Confidence 88988877664 799999999998864
No 40
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens}
Probab=96.83 E-value=0.0071 Score=50.10 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=60.2
Q ss_pred cEEEcCCCCCHHHHHHHHH-CCCCc-c-CHHHHc------cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHH
Q 048797 11 SVSLTVALRNENGLAEALG-SNFDY-A-SQAEIK------GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGA 81 (240)
Q Consensus 11 ~Ii~~gp~K~~~~l~~A~~-~gv~~-~-s~~EL~------~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~ 81 (240)
.+.|-|+.. .+.++.+++ .++.. + |.+.++ .+.++..+|.|.||. +. ..+|+|++++++.+
T Consensus 79 ~wh~iG~lq-~nk~~~~v~~~~~i~sVds~~~a~~L~~~a~~~g~~~~V~LqVdt-G~--------e~~R~Gv~~ee~~~ 148 (244)
T 3r79_A 79 ELHLIGPLQ-SNKAADAVALFDVVESIDREKIARALSEECARQGRSLRFYVQVNT-GL--------EPQKAGIDPRETVA 148 (244)
T ss_dssp EEEECSCCC-GGGHHHHHHHCSEEEEECSHHHHHHHHHHHHHHTCCCEEEEEBCT-TC--------CTTSCSBCHHHHHH
T ss_pred EEEecCCCC-HHHHHHHHHHCCEEEeeCCHHHHHHHHHHHHHcCCCceEEEEEEC-CC--------CcCCCCCCHHHHHH
Confidence 346778765 344555653 55532 2 775555 244677899999998 31 13499999999999
Q ss_pred HHHHHHhC-CCcEEEEEEeeCCCCCChH
Q 048797 82 LLEAALAS-QLGVVGISFHIGSGATDFG 108 (240)
Q Consensus 82 ~l~~a~~~-~l~~~Glh~H~gS~~~~~~ 108 (240)
+++.+.++ +|++.||..|... .-+++
T Consensus 149 l~~~i~~l~~L~l~GlmTh~a~-~dd~~ 175 (244)
T 3r79_A 149 FVAFCRDELKLPVEGLMCIPPA-EENPG 175 (244)
T ss_dssp HHHHHHHTSCCCCCEEECCCCT-TSCSH
T ss_pred HHHHHHcCCCCEEEEEEecCCC-CCCHH
Confidence 99887765 7999999888644 45665
No 41
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A*
Probab=96.17 E-value=0.0064 Score=50.69 Aligned_cols=102 Identities=16% Similarity=0.109 Sum_probs=59.7
Q ss_pred EEEc--CCCCCHHHHHHH--H-HCCCCcc--CHHHHc------cccCC---CCcEEEEEeeCCCCCCcccCCCCCCCCCC
Q 048797 12 VSLT--VALRNENGLAEA--L-GSNFDYA--SQAEIK------GKWHP---RCDLLIRIKALDDCKAVCPQAQDSKCGAN 75 (240)
Q Consensus 12 Ii~~--gp~K~~~~l~~A--~-~~gv~~~--s~~EL~------~~~~~---~~~v~lRi~~~~~~~~~~~~~~~skFG~~ 75 (240)
|++. |+.. .+.++.+ + +.++... |.+.++ .+.++ ..+|.|.||. +. ..+|+|++
T Consensus 85 l~~h~iG~lq-~nk~~~~~~~~~~~l~~sVds~~~a~~l~~~a~~~~~~~~~l~V~lqVdt-G~--------e~~R~G~~ 154 (256)
T 1ct5_A 85 IKWHFIGGLQ-TNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINT-SH--------EDQKSGLN 154 (256)
T ss_dssp CEEEECSCCC-GGGHHHHHHCTTEEEEEEECSHHHHHHHHHHHHHHCTTSCCEEEEEEBCC-SS--------SCCSSSBC
T ss_pred eeEeecCCCC-HHHHHHHhcccccCEEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEEEC-CC--------CCCCcCcC
Confidence 6665 7743 3345555 2 3333222 766655 23345 5789998887 21 12499999
Q ss_pred H-HHHHHHHHHHH--hC-CCcEEEEEEee--CCCCCChHHHHHHHHHHHHHHHHH
Q 048797 76 L-AEIGALLEAAL--AS-QLGVVGISFHI--GSGATDFGAFDGAISAAKAVFDAA 124 (240)
Q Consensus 76 ~-~~~~~~l~~a~--~~-~l~~~Glh~H~--gS~~~~~~~~~~~i~~~~~~~~~l 124 (240)
+ +++.++++.+. +. +|++.||..|. +.. .+++......+.+.++.+.+
T Consensus 155 ~~~e~~~l~~~i~~~~~~~L~l~Glmth~~~~~a-d~~~~~~~~f~~~~~~~~~l 208 (256)
T 1ct5_A 155 NEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVS-HEDSKENRDFATLVEWKKKI 208 (256)
T ss_dssp CHHHHHHHHHHHHSTTCCSEEEEEEECCCCCC----------HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHccCCCeeEEEEEEECCcCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 9 89999998877 54 79999999999 543 23333334444555555553
No 42
>3m1r_A Formimidoylglutamase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: CAC; 2.20A {Bacillus subtilis}
Probab=80.55 E-value=5.8 Score=33.72 Aligned_cols=99 Identities=15% Similarity=0.085 Sum_probs=63.7
Q ss_pred CCCCcEEEcCCCC---CHHHHHHHHHCCCCccCHHHHc------------cccC-CCCcEEEEEeeCCCC-CCccc-CCC
Q 048797 7 VSGKSVSLTVALR---NENGLAEALGSNFDYASQAEIK------------GKWH-PRCDLLIRIKALDDC-KAVCP-QAQ 68 (240)
Q Consensus 7 ~~~~~Ii~~gp~K---~~~~l~~A~~~gv~~~s~~EL~------------~~~~-~~~~v~lRi~~~~~~-~~~~~-~~~ 68 (240)
+++++++.-|--. ++++.+++.+.|+.+++.+|+. +... ..-+|.|=+.. +.- .+..+ .+.
T Consensus 181 ~~~~~~~~iGiR~~~~~~~e~~~~~~~g~~~~~~~ei~~~g~~~v~~~~~~~~~~~~~~vylSiDi-DvLDpa~aPgtgt 259 (322)
T 3m1r_A 181 IEGQHLIQLGIREFSNSQAYEAYAKKHNVNIHTMDMIREKGLIPTIKEILPVVQDKTDFIFISVDM-DVLDQSHAPGCPA 259 (322)
T ss_dssp SCGGGEEEEEECTTSSCHHHHHHHHHTTCEEEEHHHHHHHCHHHHHHHHHHHHHTTCSEEEEEEEG-GGBCTTTCTTSSS
T ss_pred CCCceEEEEeeCCCCCCHHHHHHHHHCCCEEEEHHHHhhcCHHHHHHHHHHHhhccCCeEEEEEee-cccChhhCCCCCC
Confidence 4678888777655 7899999999999877555543 1111 12257777776 421 12222 233
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCCh
Q 048797 69 DSKCGANLAEIGALLEAALASQLGVVGISFHIGSGATDF 107 (240)
Q Consensus 69 ~skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~ 107 (240)
....|++..|+.++++.+.+.+ +++|+.+---+-..|.
T Consensus 260 p~pgGlt~~e~~~il~~l~~~~-~vvg~DivEv~P~~D~ 297 (322)
T 3m1r_A 260 IGPGGLYTDELLEAVKYIAQQP-NVAGIEIVEVDPTLDF 297 (322)
T ss_dssp CCSSCBCHHHHHHHHHHHHTST-TEEEEEEECCCGGGSS
T ss_pred CCCCCCCHHHHHHHHHHHhccC-CEEEEEEEEECCCCCC
Confidence 4589999999999999876543 6788877543433443
No 43
>4g3h_A Arginase (ROCF); rossmann fold, hydrolytic enzyme, manganous ION BI hydrolysis, hydrolase; 2.20A {Helicobacter pylori}
Probab=79.73 E-value=26 Score=29.75 Aligned_cols=99 Identities=10% Similarity=0.042 Sum_probs=63.7
Q ss_pred CCCCcEEEcCC-CCCHHHHHHHHHCCCCccCHHHHc-----------cccCCCCcEEEEEeeCCCCC-Cccc-CCCCCCC
Q 048797 7 VSGKSVSLTVA-LRNENGLAEALGSNFDYASQAEIK-----------GKWHPRCDLLIRIKALDDCK-AVCP-QAQDSKC 72 (240)
Q Consensus 7 ~~~~~Ii~~gp-~K~~~~l~~A~~~gv~~~s~~EL~-----------~~~~~~~~v~lRi~~~~~~~-~~~~-~~~~skF 72 (240)
++++++++-|- .-+++|.+++.+.|+.+++.+|++ ......-+|.|=+.. +.-. +..+ .++....
T Consensus 174 ~~~~~~v~iGiR~~~~~e~~~~~~~gi~~~~~~ei~~g~~~v~~~~~~~l~~~~~vylS~Di-DvLDpa~aPgtgtP~pg 252 (330)
T 4g3h_A 174 IDPKCLVYFGVRSTEQSERDVIRELQIPLFSVDAIRENMQEVVQKTKESLKAVDIIYLSLDL-DIMDGKLFTSTGVRENN 252 (330)
T ss_dssp CCGGGEEEESCCBCCHHHHHHHHHHTCCEECHHHHHHCHHHHHHHHHHHHTTCSEEEEEEEG-GGBCTTTCCSSSSCCSS
T ss_pred CCcccEEEEecCCCCHHHHHHHHHcCCeEEEHHHhhcCHHHHHHHHHHHhcCCCeEEEEEec-CcCChhhCCCCCCCCCC
Confidence 56788888775 336788888889999887666552 122223467777766 4211 1111 2345589
Q ss_pred CCCHHHHHHHHHHHHhC-CCcEEEEEEeeCCCCCC
Q 048797 73 GANLAEIGALLEAALAS-QLGVVGISFHIGSGATD 106 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~-~l~~~Glh~H~gS~~~~ 106 (240)
|++..|+..+++.+.+. ..+++|+.+=-=+-.+|
T Consensus 253 Glt~~e~~~il~~l~~~~~~~vvg~DivEvnP~~D 287 (330)
T 4g3h_A 253 GLSFDELKQLLGLLLESFKDRLKAVEVTEYNPTVS 287 (330)
T ss_dssp CBCHHHHHHHHHHHHHHTTTTEEEEEEECCCGGGC
T ss_pred CCCHHHHHHHHHHHHhhCCCCEEEEEEEEECcccc
Confidence 99999999999987651 34678887754333334
No 44
>1pq3_A Arginase II, mitochondrial precursor; biosynthetic protein, hydrolase; HET: S2C; 2.70A {Homo sapiens} SCOP: c.42.1.1
Probab=78.20 E-value=16 Score=30.57 Aligned_cols=98 Identities=10% Similarity=0.032 Sum_probs=63.8
Q ss_pred CCCCcEEEcCCC-CCHHHHHHHHHCCCCccCHHHHc------------ccc--CCCCcEEEEEeeCCCCC-Cccc-CCCC
Q 048797 7 VSGKSVSLTVAL-RNENGLAEALGSNFDYASQAEIK------------GKW--HPRCDLLIRIKALDDCK-AVCP-QAQD 69 (240)
Q Consensus 7 ~~~~~Ii~~gp~-K~~~~l~~A~~~gv~~~s~~EL~------------~~~--~~~~~v~lRi~~~~~~~-~~~~-~~~~ 69 (240)
++++++++-|-- .++++.+.+.+.|+.+++.+|+. ... ...-+|.|=+.. +.-. +..+ .++.
T Consensus 165 ~~~~~~~~iGiR~~~~~e~~~~~~~g~~~~~~~~i~~~g~~~~~~~~~~~l~~~~~~~vylSiDi-DvlDp~~aPgtgtp 243 (306)
T 1pq3_A 165 ISSASIVYIGLRDVDPPEHFILKNYDIQYFSMRDIDRLGIQKVMERTFDLLIGKRQRPIHLSFDI-DAFDPTLAPATGTP 243 (306)
T ss_dssp SCGGGEEEESCCCCCHHHHHHHHHTTCEEECHHHHHHHCHHHHHHHHHHHHHSSSCCCEEEEEEG-GGBCTTTCCSBSSC
T ss_pred CCcccEEEEEcCCCCHHHHHHHHHcCCeEEEhHHHhhhCHHHHHHHHHHHHhhcCCCeEEEEEec-CCcCccccCCCCCC
Confidence 467888887773 36788899999999877555543 122 123357777776 4211 1111 2334
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCC
Q 048797 70 SKCGANLAEIGALLEAALASQLGVVGISFHIGSGATD 106 (240)
Q Consensus 70 skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~ 106 (240)
...|++..|+..+++.+.+.+ +++|+.+--=+-..|
T Consensus 244 ~pgGlt~~e~~~~l~~l~~~~-~vvg~DivEv~P~~D 279 (306)
T 1pq3_A 244 VVGGLTYREGMYIAEEIHNTG-LLSALDLVEVNPQLA 279 (306)
T ss_dssp CSSCBCHHHHHHHHHHHHTTT-CEEEEEEECBCGGGS
T ss_pred CCCCCCHHHHHHHHHHHHcCC-CEEEEEEEEECCCCC
Confidence 589999999999999876543 588888764444455
No 45
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=77.57 E-value=3 Score=33.79 Aligned_cols=52 Identities=6% Similarity=-0.127 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 78 EIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 78 ~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
.+.+.++.|+++|.+.+.+++|.++.....+.|.+.++...++.+. +++.|+
T Consensus 85 ~~~~~i~~A~~lG~~~v~~~~~p~~~~~~~~~~~~~~~~l~~l~~~-a~~~Gv 136 (281)
T 3u0h_A 85 LLPDRARLCARLGARSVTAFLWPSMDEEPVRYISQLARRIRQVAVE-LLPLGM 136 (281)
T ss_dssp THHHHHHHHHHTTCCEEEEECCSEESSCHHHHHHHHHHHHHHHHHH-HGGGTC
T ss_pred HHHHHHHHHHHcCCCEEEEeecCCCCCcchhhHHHHHHHHHHHHHH-HHHcCC
Confidence 4566888899999988777777765433345677777777777777 777776
No 46
>2ef5_A Arginase; TTHA1496, structural genomic NPPSFA, national project on protein structural and function analyses; HET: LYS; 2.00A {Thermus thermophilus} PDB: 2ef4_A* 2eiv_A
Probab=73.64 E-value=12 Score=31.00 Aligned_cols=99 Identities=16% Similarity=0.081 Sum_probs=63.0
Q ss_pred CCCCcEEEcCCC-CCHHHHHHHHHCCCCccCHHHHc------------cccCCCCcEEEEEeeCCCC-CCccc-CCCCCC
Q 048797 7 VSGKSVSLTVAL-RNENGLAEALGSNFDYASQAEIK------------GKWHPRCDLLIRIKALDDC-KAVCP-QAQDSK 71 (240)
Q Consensus 7 ~~~~~Ii~~gp~-K~~~~l~~A~~~gv~~~s~~EL~------------~~~~~~~~v~lRi~~~~~~-~~~~~-~~~~sk 71 (240)
++++++++-|.- .+.++.+.+.+.|+.+++.+|+. .... .-+|.|=+.. +.- .+..+ .++...
T Consensus 157 ~~~~~~~~iGiR~~~~~e~~~~~~~g~~~~~~~~i~~~g~~~v~~~~~~~l~-~~~vylSiDi-DvlDp~~aPgtgtp~p 234 (290)
T 2ef5_A 157 VDPKDVVLVGVRSLDPGEKRLLKEAGVRVYTMHEVDRLGVARIAEEVLKHLQ-GLPLHVSLDA-DVLDPTLAPGVGTPVP 234 (290)
T ss_dssp CCGGGEEEEEECBCCHHHHHHHHHHTCEEEEHHHHHHHCHHHHHHHHHHHTT-TSCEEEEEEG-GGBCTTTCCCCSSCCS
T ss_pred cCcccEEEEECCCCCHHHHHHHHHcCCeEEEHHHHHhcCHHHHHHHHHHhcC-CCcEEEEEcc-CCCChhhCCCCCCCCC
Confidence 567788876652 35788888889998877444443 2232 3467777776 421 11111 233558
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChH
Q 048797 72 CGANLAEIGALLEAALASQLGVVGISFHIGSGATDFG 108 (240)
Q Consensus 72 FG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~ 108 (240)
.|++..|+.++++.+.+.+ +++|+.+=-=+-..|..
T Consensus 235 gGlt~~e~~~~l~~l~~~~-~vvg~DivE~~P~~D~~ 270 (290)
T 2ef5_A 235 GGLTYREAHLLMEILAESG-RVQSLDLVEVNPILDER 270 (290)
T ss_dssp SCBCHHHHHHHHHHHHHHT-CEEEEEEECCCTTTCST
T ss_pred CCCCHHHHHHHHHHHHcCC-CEEEEEEEEECCCCCCc
Confidence 9999999999999876543 57888776444445543
No 47
>3sl1_A Arginase; metallohydrolase, hydrolase-hydrolase inhibit complex; HET: FB6; 1.90A {Plasmodium falciparum} PDB: 3mmr_A* 3sl0_A*
Probab=72.03 E-value=16 Score=32.23 Aligned_cols=99 Identities=17% Similarity=0.212 Sum_probs=62.2
Q ss_pred CCCCcEEEcCC-CCCHHHHHHHHHCCCCccCHHHHc------------cccC--CCCcEEEEEeeCCCCC-Cccc-CCCC
Q 048797 7 VSGKSVSLTVA-LRNENGLAEALGSNFDYASQAEIK------------GKWH--PRCDLLIRIKALDDCK-AVCP-QAQD 69 (240)
Q Consensus 7 ~~~~~Ii~~gp-~K~~~~l~~A~~~gv~~~s~~EL~------------~~~~--~~~~v~lRi~~~~~~~-~~~~-~~~~ 69 (240)
++|+++++-|- .-+++|.+++.+.|+.+++.+|++ .... ....|.|=+.. +.-. +..+ .++.
T Consensus 262 l~p~~vv~IGIRs~d~eE~e~~~~~Gi~v~t~~eI~~~Gi~~vie~il~~l~~~~~~~VYLSfDI-DvLDPa~APGtGTP 340 (413)
T 3sl1_A 262 LKPENTAIIGIRDIDAYEKIILKKCNINYYTIFDIEKNGIYNTICTALEKIDPNSNCPIHISLDI-DSVDNVFAPGTGTV 340 (413)
T ss_dssp CCGGGEEEEEECCCCHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHHHHHHHCTTSCSCEEEEEEG-GGBCTTTCCCSSSC
T ss_pred cCcceEEEEEcCCCCHHHHHHHHHcCCEEEeHHHhhhcCHHHHHHHHHHHhhhcCCceEEEEEec-cEEChhhCCCCCCC
Confidence 46778887764 236788999999999877555543 1222 23457777766 4211 1111 2335
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCCh
Q 048797 70 SKCGANLAEIGALLEAALASQLGVVGISFHIGSGATDF 107 (240)
Q Consensus 70 skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~ 107 (240)
...|++..|+..+++.+.+.+ +++|+.+=-=+-.+|.
T Consensus 341 epGGLt~rEll~llr~L~~s~-kVvG~DIVEvnP~lD~ 377 (413)
T 3sl1_A 341 AKGGLNYREINLLMKILAETK-RVVSMDLVEYNPSLDE 377 (413)
T ss_dssp CSSCBCHHHHHHHHHHHHHHS-CEEEEEEECCCGGGCC
T ss_pred CCCCCCHHHHHHHHHHHhccC-CEEEEEEEeECCccCc
Confidence 589999999999999876543 5778776533333444
No 48
>2cev_A Protein (arginase); enzyme, hydrolase, arginine hydrolysis, nitrogen metabolism, manganese metalloenzyme; 2.15A {Bacillus caldovelox} SCOP: c.42.1.1 PDB: 1cev_A 3cev_A* 4cev_A 5cev_A*
Probab=69.15 E-value=12 Score=31.33 Aligned_cols=99 Identities=12% Similarity=0.032 Sum_probs=61.6
Q ss_pred CCCCcEEEcCCC-CCHHHHHHHHHCCCCccCHHHHc------------cccC-CCCcEEEEEeeCCCC-CCccc-CCCCC
Q 048797 7 VSGKSVSLTVAL-RNENGLAEALGSNFDYASQAEIK------------GKWH-PRCDLLIRIKALDDC-KAVCP-QAQDS 70 (240)
Q Consensus 7 ~~~~~Ii~~gp~-K~~~~l~~A~~~gv~~~s~~EL~------------~~~~-~~~~v~lRi~~~~~~-~~~~~-~~~~s 70 (240)
++++++++-|.- .+.++.+.+.+.|+.+++.+|+. +... ..-+|.|=+.. +.- .+..+ .++..
T Consensus 164 ~~~~~~~~iGiR~~~~~e~~~~~~~g~~~~~~~~i~~~g~~~~~~~~l~~~~~~~~~vylSiDi-DvlDp~~aPgtgtp~ 242 (299)
T 2cev_A 164 IKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDL-DGLDPSDAPGVGTPV 242 (299)
T ss_dssp SCGGGEEEEEECBCCHHHHHHHHHHTCEEEEHHHHHHHCHHHHHHHHHHHHHTTCSEEEEEEEG-GGBCTTTCCCCSSCC
T ss_pred CCccceEEEECCCCCHHHHHHHHHcCCeEEEHHHHhhcCHHHHHHHHHHHhccCCCeEEEEEcc-CccChhhcCCCCCCC
Confidence 456788877652 35778888889999877444443 1222 23467887776 521 11111 23355
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCCh
Q 048797 71 KCGANLAEIGALLEAALASQLGVVGISFHIGSGATDF 107 (240)
Q Consensus 71 kFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~ 107 (240)
..|++..|+.++++.+.+.+ +++|+.+--=+-..|.
T Consensus 243 pgGlt~~e~~~~l~~l~~~~-~vvg~DivE~~P~~D~ 278 (299)
T 2cev_A 243 IGGLTYRESHLAMEMLAEAQ-IITSAEFVEVNPILDE 278 (299)
T ss_dssp SSCBCHHHHHHHHHHHHHHT-CEEEEEEECCCGGGSS
T ss_pred CCCCCHHHHHHHHHHHhcCC-CEEEEEEEEECCCCCC
Confidence 89999999999999876533 5778776533333343
No 49
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=66.80 E-value=9.8 Score=31.59 Aligned_cols=52 Identities=10% Similarity=-0.084 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 78 EIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 78 ~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
++.++.+.+++.||++.++|+-..-...+++...+.++...+.++. ++.+|.
T Consensus 77 ~~~~l~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-A~~lG~ 128 (305)
T 3obe_A 77 ASKDYKKMVDDAGLRISSSHLTPSLREYTKENMPKFDEFWKKATDI-HAELGV 128 (305)
T ss_dssp CHHHHHHHHHHTTCEEEEEBCCCSCCCCCGGGHHHHHHHHHHHHHH-HHHHTC
T ss_pred CHHHHHHHHHHCCCeEEEeeccccccccchhhHHHHHHHHHHHHHH-HHHcCC
Confidence 4444444555566666655432211112333333334444444444 444443
No 50
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=66.56 E-value=51 Score=28.79 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEe-------eCCCCC-------ChHHHHHHH-HHHHHHHHHHHHhCCC
Q 048797 74 ANLAEIGALLEAALASQLGVVGISFH-------IGSGAT-------DFGAFDGAI-SAAKAVFDAASARHGL 130 (240)
Q Consensus 74 ~~~~~~~~~l~~a~~~~l~~~Glh~H-------~gS~~~-------~~~~~~~~i-~~~~~~~~~l~~~~g~ 130 (240)
.+.+.+.+++++|++.||++. |.|| .|+|.. +.+.+.+.+ +.+++++..+ ++.|.
T Consensus 86 ~d~~~~~~~a~~Ak~~GLkVl-ldfHysD~WadPg~Q~~P~aW~~~~~~~l~~~~~~yt~~~l~~l-~~~g~ 155 (399)
T 1ur4_A 86 NDLEKAIQIGKRATANGMKLL-ADFHYSDFWADPAKQKAPKAWANLNFEDKKTALYQYTKQSLKAM-KAAGI 155 (399)
T ss_dssp CCHHHHHHHHHHHHHTTCEEE-EEECSSSSCCSSSCCCCCGGGTTCCHHHHHHHHHHHHHHHHHHH-HHTTC
T ss_pred CCHHHHHHHHHHHHHCCCEEE-EEeccCCccCCcccccCccccccCCHHHHHHHHHHHHHHHHHHH-HhcCC
Confidence 678899999999999999864 5666 444432 334444333 4566677774 44555
No 51
>2aeb_A Arginase 1; hydrolase, binuclear manganese cluster, boronic acid inhibit perfectly twinned crystal; HET: ABH; 1.29A {Homo sapiens} SCOP: c.42.1.1 PDB: 1wva_A* 2pha_A 2pho_A 2pll_A* 2zav_A 3dj8_A* 3f80_A* 3gmz_A 3gn0_A* 3kv2_A* 3lp4_A* 3lp7_A* 3mfv_A* 3mfw_A* 3mjl_A 3sjt_A* 3skk_A* 3tf3_A 3th7_A 3the_A* ...
Probab=65.68 E-value=17 Score=30.67 Aligned_cols=98 Identities=11% Similarity=0.063 Sum_probs=62.3
Q ss_pred CCCCcEEEcCCC-CCHHHHHHHHHCCCCccCHHHHc------------ccc--CCCCcEEEEEeeCCCCC-Cccc-CCCC
Q 048797 7 VSGKSVSLTVAL-RNENGLAEALGSNFDYASQAEIK------------GKW--HPRCDLLIRIKALDDCK-AVCP-QAQD 69 (240)
Q Consensus 7 ~~~~~Ii~~gp~-K~~~~l~~A~~~gv~~~s~~EL~------------~~~--~~~~~v~lRi~~~~~~~-~~~~-~~~~ 69 (240)
++++++++-|-- .+.++.+.+.+.|+.+++.+|+. ... ...-+|.|=+.. +.-. +..+ .++.
T Consensus 169 ~~~~~~~~iGiR~~~~~e~~~~~~~g~~~~~~~~i~~~g~~~~~~~~~~~l~~~~~~~vylSiDi-DvLDpa~aPgtgtp 247 (322)
T 2aeb_A 169 ISAKDIVYIGLRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLGRKKRPIHLSFDV-DGLDPSFTPATGTP 247 (322)
T ss_dssp BCGGGEEEEEECCCCHHHHHHHHHHTCEEEEHHHHHHHCHHHHHHHHHHHHHSSSCCCEEEEEEG-GGBCTTTCCSBSSC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHcCCEEEEHHHHHhhCHHHHHHHHHHHHhhcCCCeEEEEEec-CcCCccccCCCCCC
Confidence 456788876652 36888899999999877444443 222 123357777776 4211 1111 2345
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCC
Q 048797 70 SKCGANLAEIGALLEAALASQLGVVGISFHIGSGATD 106 (240)
Q Consensus 70 skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~ 106 (240)
...|++..|+.++++.+.+.+ +++|+.+=-=+-..|
T Consensus 248 ~pgGlt~~e~~~~l~~l~~~~-~vvg~DivEv~P~~D 283 (322)
T 2aeb_A 248 VVGGLTYREGLYITEEIYKTG-LLSGLDIMEVNPSLG 283 (322)
T ss_dssp CSSCBCHHHHHHHHHHHHHHS-CEEEEEEECBCGGGC
T ss_pred CCCCCCHHHHHHHHHHHHccC-CEEEEEEEEECCCCC
Confidence 589999999999999876543 578887764344455
No 52
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=63.32 E-value=18 Score=28.78 Aligned_cols=53 Identities=11% Similarity=0.085 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeCCCC---CC-hHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 048797 78 EIGALLEAALASQLGVVGISFHIGSGA---TD-FGAFDGAISAAKAVFDAASARHGLTDQMR 135 (240)
Q Consensus 78 ~~~~~l~~a~~~~l~~~Glh~H~gS~~---~~-~~~~~~~i~~~~~~~~~l~~~~g~~~~~~ 135 (240)
.+.+.++.|+++|.+.+.+| .|... .+ .+.|...++...++.+. +++.|+ .+-
T Consensus 84 ~~~~~i~~a~~lG~~~v~~~--~g~~~~~~~~~~~~~~~~~~~l~~l~~~-a~~~gv--~l~ 140 (275)
T 3qc0_A 84 DNRRAVDEAAELGADCLVLV--AGGLPGGSKNIDAARRMVVEGIAAVLPH-ARAAGV--PLA 140 (275)
T ss_dssp HHHHHHHHHHHTTCSCEEEE--CBCCCTTCCCHHHHHHHHHHHHHHHHHH-HHHHTC--CEE
T ss_pred HHHHHHHHHHHhCCCEEEEe--eCCCCCCCcCHHHHHHHHHHHHHHHHHH-HHHcCC--EEE
Confidence 45566777778887765544 44321 12 34566666666666666 777777 554
No 53
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=63.13 E-value=23 Score=28.17 Aligned_cols=43 Identities=14% Similarity=0.032 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHH
Q 048797 72 CGANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAA 117 (240)
Q Consensus 72 FG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~ 117 (240)
++.+.+++.++.+.+++.||++.++|.... ...+.+.+.++.+
T Consensus 56 ~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~---~~~~~~~~~i~~A 98 (257)
T 3lmz_A 56 LNSTDEQIRAFHDKCAAHKVTGYAVGPIYM---KSEEEIDRAFDYA 98 (257)
T ss_dssp TTCCHHHHHHHHHHHHHTTCEEEEEEEEEE---CSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEecccc---CCHHHHHHHHHHH
Confidence 455677777777777888888887776654 3445555544443
No 54
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=62.38 E-value=16 Score=29.64 Aligned_cols=56 Identities=14% Similarity=0.068 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEeeCC-------------CCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 74 ANLAEIGALLEAALASQLGVVGISFHIGS-------------GATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 74 ~~~~~~~~~l~~a~~~~l~~~Glh~H~gS-------------~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
++.+++.++.+.+++.||++..+++|... ...+++...+.++...+.++. ++.+|.
T Consensus 48 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~-a~~lG~ 116 (290)
T 3tva_A 48 RTREHAQAFRAKCDAAGIQVTVIFGGFDGESYADIPTTARTVGLVPLETRASRVAEMKEISDF-ASWVGC 116 (290)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEECCCTTCCCSSHHHHHHHSSSCSTTTHHHHHHHHHHHHHH-HHHHTC
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEeeccCCcccccccccccccCCCCHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 45677888888889999999998876421 113556667777777777777 666665
No 55
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=61.67 E-value=23 Score=28.69 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEEeeC--C--CCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 72 CGANLAEIGALLEAALASQLGVVGISFHIG--S--GATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 72 FG~~~~~~~~~l~~a~~~~l~~~Glh~H~g--S--~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+..+.+++.++.+.+++.||++.++|+... - ...+++...+.++.+.+.++. ++.+|.
T Consensus 61 ~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~-A~~lG~ 122 (295)
T 3cqj_A 61 LDWSREQRLALVNAIVETGVRVPSMCLSAHRRFPLGSEDDAVRAQGLEIMRKAIQF-AQDVGI 122 (295)
T ss_dssp GGCCHHHHHHHHHHHHHHCCEEEEEEEGGGGTSCTTCSSHHHHHHHHHHHHHHHHH-HHHHTC
T ss_pred ccCCHHHHHHHHHHHHHcCCeEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 345567777777788888998888875311 1 123667777777777777777 666665
No 56
>3nio_A Guanidinobutyrase; PA1421, GBUA, hydrolase; HET: MLY; 2.00A {Pseudomonas aeruginosa} SCOP: c.42.1.0
Probab=60.44 E-value=4.8 Score=34.20 Aligned_cols=95 Identities=12% Similarity=0.055 Sum_probs=60.4
Q ss_pred CCCcEEEcCCC---CCHHHHHHHHHCCCCccCHHHHc------------cccCCCCcEEEEEeeCCCCC-Cccc-CCCCC
Q 048797 8 SGKSVSLTVAL---RNENGLAEALGSNFDYASQAEIK------------GKWHPRCDLLIRIKALDDCK-AVCP-QAQDS 70 (240)
Q Consensus 8 ~~~~Ii~~gp~---K~~~~l~~A~~~gv~~~s~~EL~------------~~~~~~~~v~lRi~~~~~~~-~~~~-~~~~s 70 (240)
+++++++-|.- .++++.+++.+.|+.+++.+|+. +... ...|.|=+.. +.-. +..+ .++..
T Consensus 182 ~~~~~~~iGiR~~~~~~~e~~~~~~~g~~~~~~~ei~~~g~~~v~~~~~~~~~-~~~vylSiDi-DvLDpa~aPgtgtp~ 259 (319)
T 3nio_A 182 DCDRVVQIGLRAQGYTAEDFNWSRXQGFRVVQAEECWHXSLEPLMAEVREXVG-GGPVYLSFDI-DGIDPAWAPGTGTPE 259 (319)
T ss_dssp EEEEEEEEEECSEESSTHHHHHHHHHTCEEEEGGGTTTCCSHHHHHHHHHHHC-SSEEEEEEEG-GGBCTTTCCCBSSCC
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHhcCcEEEEHHHhhhcCHHHHHHHHHHhcC-CCcEEEEEec-CccChhhCCCCCCCC
Confidence 56788877765 36789999999998877444443 1222 3467777766 4211 1111 23345
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCC
Q 048797 71 KCGANLAEIGALLEAALASQLGVVGISFHIGSGATD 106 (240)
Q Consensus 71 kFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~ 106 (240)
..|++..|+.++++.+. +.+++|+.+=-=+-..|
T Consensus 260 pgGlt~~e~~~~l~~l~--~~~vvg~DivEv~P~~D 293 (319)
T 3nio_A 260 IGGLTTIQAMEIIRGCQ--GLDLIGCDLVEVSPPYD 293 (319)
T ss_dssp SSCBCHHHHHHHHHTTT--TSEEEEEEEECBCGGGC
T ss_pred CCCCCHHHHHHHHHHhc--cCCeeEEEEEEECCCCC
Confidence 89999999999988653 56788988653333334
No 57
>1gq6_A Proclavaminate amidino hydrolase; clavaminic, PAH, arginase, antibioti; 1.75A {Streptomyces clavuligerus} SCOP: c.42.1.1 PDB: 1gq7_A
Probab=60.41 E-value=6.7 Score=33.10 Aligned_cols=96 Identities=19% Similarity=0.141 Sum_probs=58.4
Q ss_pred CCCCcEEEcCCCC---CHHHHHHHHHCCCCccCHHHHc------------cccCCCCcEEEEEeeCCCCC-Cccc-CCCC
Q 048797 7 VSGKSVSLTVALR---NENGLAEALGSNFDYASQAEIK------------GKWHPRCDLLIRIKALDDCK-AVCP-QAQD 69 (240)
Q Consensus 7 ~~~~~Ii~~gp~K---~~~~l~~A~~~gv~~~s~~EL~------------~~~~~~~~v~lRi~~~~~~~-~~~~-~~~~ 69 (240)
++++++++-|--. +.++++.+.+.|+.+++.+|++ .... .-+|.|=+.. +.-. +..+ .++.
T Consensus 173 ~~~~~~~~iGiR~~~~~~~e~~~~~~~g~~~~~~~~i~~~g~~~v~~~~~~~~~-~~~vylSiDi-DvLDpa~aPgtgtp 250 (313)
T 1gq6_A 173 IDPAAMVQIGIRGHNPKPDSLDYARGHGVRVVTADEFGELGVGGTADLIREKVG-QRPVYVSVDI-DVVDPAFAPGTGTP 250 (313)
T ss_dssp EEEEEEEEEEECCC------CHHHHHTTCEEEEHHHHHHHHHHHHHHHHHHHHT-TSEEEEEEEG-GGBCTTTCCSBSSC
T ss_pred CCCCcEEEEEecCCCCCHHHHHHHHHcCCEEEEHHHHhhcCHHHHHHHHHHHcC-CCeEEEEEee-cCcCcccCCCCCCC
Confidence 4567888777653 6788899999999877544543 1222 3457777776 4211 1111 2345
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCC
Q 048797 70 SKCGANLAEIGALLEAALASQLGVVGISFHIGSGATD 106 (240)
Q Consensus 70 skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~ 106 (240)
...|++..|+.++++.... .+++|+.+=-=+-..|
T Consensus 251 ~pgGlt~~e~~~~l~~l~~--~~vvg~DivE~~P~~D 285 (313)
T 1gq6_A 251 APGGLLSREVLALLRCVGD--LKPVGFDVMEVSPLYD 285 (313)
T ss_dssp CSSCBCHHHHHHHGGGGGG--SEEEEEEEECBCGGGC
T ss_pred CCCCCCHHHHHHHHHHHcc--CCeEEEEEEEECCCcC
Confidence 5899999999999986643 4788887764343334
No 58
>1xfk_A Formimidoylglutamase; formiminoglutamase protein, vibrio cholerae O1 biovar eltor, structure genomics, protein structure initiative, MCSG; 1.80A {Vibrio cholerae} SCOP: c.42.1.1
Probab=59.87 E-value=79 Score=26.68 Aligned_cols=99 Identities=10% Similarity=-0.031 Sum_probs=61.1
Q ss_pred CCCCcEEEcCCC---CCHHHHHHHHHCCCCccCHHHHc------------cccCCCCcEEEEEeeCCCC-CCccc-CCCC
Q 048797 7 VSGKSVSLTVAL---RNENGLAEALGSNFDYASQAEIK------------GKWHPRCDLLIRIKALDDC-KAVCP-QAQD 69 (240)
Q Consensus 7 ~~~~~Ii~~gp~---K~~~~l~~A~~~gv~~~s~~EL~------------~~~~~~~~v~lRi~~~~~~-~~~~~-~~~~ 69 (240)
+.+++++.-|-- .+.++++.+.+.|+.+++.+|+. ......-.|.|=+.. +.- .+..+ .++.
T Consensus 191 ~~~~~~~~iGiR~~~~~~~~~~~~~~~gi~~~~~~ei~~~g~~~v~~~i~~~l~~~~~vylSiDi-DvLDpa~aPgtgtp 269 (336)
T 1xfk_A 191 GWDFHYACLGVSRASNTPALFERADKLGVWYVEDKAFSPLSLKDHLTQLQHFIDDCDYLYLTIDL-DVFPAASAPGVSAP 269 (336)
T ss_dssp TCCCEEEEEEECTTTSCHHHHHHHHHTTCEEEEGGGCSTTTHHHHHHHHHHHHHTCSEEEEEEEG-GGSBTTTCCSSSSC
T ss_pred CCCceEEEEEeCCCCCCHHHHHHHHHcCCEEEEHHHHHhcCHHHHHHHHHHHhcCCCeEEEEEee-ccCChhcCCCCCCC
Confidence 467788876653 45778999999999877433432 111112357776665 421 11111 2345
Q ss_pred CCCCCCHHHHHHHHHHH-HhCCCcEEEEEEeeCCCCCCh
Q 048797 70 SKCGANLAEIGALLEAA-LASQLGVVGISFHIGSGATDF 107 (240)
Q Consensus 70 skFG~~~~~~~~~l~~a-~~~~l~~~Glh~H~gS~~~~~ 107 (240)
...|++..|+..+++.+ .+ ..+++|+.+--=+-..|.
T Consensus 270 ~pgGlt~~e~~~~l~~l~~~-~~~vvg~DivEv~P~~D~ 307 (336)
T 1xfk_A 270 AARGVSLEALAPYFDRILHY-KNKLMIADIAEYNPSFDI 307 (336)
T ss_dssp BSSCCCHHHHHHHHHHHHHC-TTTEEEEEEECCCGGGCS
T ss_pred CCCCCCHHHHHHHHHHHHhC-CCCEEEEEEEEECCCCCC
Confidence 58999999999999987 43 346788877643433443
No 59
>1woh_A Agmatinase; alpha/beta fold, hydrolase; 1.75A {Deinococcus radiodurans} SCOP: c.42.1.1 PDB: 1wog_A 1woi_A
Probab=59.48 E-value=76 Score=26.36 Aligned_cols=95 Identities=17% Similarity=0.159 Sum_probs=60.0
Q ss_pred cEEEcCCCC---CHHHHHHHHHCCCCccCHHHHc-------cccCCCCcEEEEEeeCCCCC-Cccc-CCCCCCCCCCHHH
Q 048797 11 SVSLTVALR---NENGLAEALGSNFDYASQAEIK-------GKWHPRCDLLIRIKALDDCK-AVCP-QAQDSKCGANLAE 78 (240)
Q Consensus 11 ~Ii~~gp~K---~~~~l~~A~~~gv~~~s~~EL~-------~~~~~~~~v~lRi~~~~~~~-~~~~-~~~~skFG~~~~~ 78 (240)
++++-|--. +.++.+.+.+.|+.+++.+|+. ++.....+|.|=+.. +.-. +..+ .++....|++..|
T Consensus 175 ~~~~iGiR~~~~~~~e~~~~~~~g~~~~~~~~i~~~~~~v~~~~~~~~~vylSiDi-DvlDpa~aPgtgtp~pgGlt~~e 253 (305)
T 1woh_A 175 HITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDV-DGFDPAVIPGTSSPEPDGLTYAQ 253 (305)
T ss_dssp EEEEEEECCSCCCHHHHHHHHHTTCEEEEHHHHHHCHHHHHTTSCCSSEEEEEEEG-GGBCTTTCCCBSSCCSSCBCHHH
T ss_pred cEEEEEeCCCCCCHHHHHHHHHcCCeEEEHHHHHHHHHHHHHHhhCCCcEEEEEee-cCCChhhCCCCCCCCCCCCCHHH
Confidence 666665533 6899999999999877555543 222223357777776 4211 2111 2345589999999
Q ss_pred HHHHHHHHHhCCCcEEEEEEeeCCCCCCh
Q 048797 79 IGALLEAALASQLGVVGISFHIGSGATDF 107 (240)
Q Consensus 79 ~~~~l~~a~~~~l~~~Glh~H~gS~~~~~ 107 (240)
+.++++.+.+. .+++|+.+--=+-..|.
T Consensus 254 ~~~~l~~l~~~-~~vvg~DivEv~P~~D~ 281 (305)
T 1woh_A 254 GMKILAAAAAN-NTVVGLDLVELAPNLDP 281 (305)
T ss_dssp HHHHHHHHHHH-SEEEEEEEECBCGGGCT
T ss_pred HHHHHHHHhcc-CCEEEEEEEEECCCCCC
Confidence 99999987643 36788876643433443
No 60
>3niq_A 3-guanidinopropionase; GPUA, hydrolase; 2.07A {Pseudomonas aeruginosa} PDB: 3nip_A
Probab=58.38 E-value=4.6 Score=34.45 Aligned_cols=95 Identities=14% Similarity=0.001 Sum_probs=60.1
Q ss_pred CCCcEEEcCCC---CCHHHHHHHHHCCCCccCHHHHc------------cccCCCCcEEEEEeeCCCCC-Cccc-CCCCC
Q 048797 8 SGKSVSLTVAL---RNENGLAEALGSNFDYASQAEIK------------GKWHPRCDLLIRIKALDDCK-AVCP-QAQDS 70 (240)
Q Consensus 8 ~~~~Ii~~gp~---K~~~~l~~A~~~gv~~~s~~EL~------------~~~~~~~~v~lRi~~~~~~~-~~~~-~~~~s 70 (240)
+++++++-|.- .++++++++.+.|+.+++.+|+. .... ...|.|=+.. +.-. +..+ .+...
T Consensus 179 ~~~~~~~iGiR~~~~~~~e~~~~~~~g~~~~~~~ei~~~g~~~v~~~~~~~~~-~~~vylSiDi-DvLDpa~aPgtgtp~ 256 (326)
T 3niq_A 179 DPLRTVQIGIRGSVYSPDDDAFARECGIRVIHMEEFVELGVEATLAEARRVVG-AGPTYVSFDV-DVLDPAFAPGTGTPE 256 (326)
T ss_dssp EEEEEEEEEECSCCSCTTSTHHHHHHTCEEEEHHHHHHHHHHHHHHHHHHHHT-TSCEEEEEEG-GGBCTTTCCCCSSCC
T ss_pred CCceEEEEeecCCCCCHHHHHHHHHCCCEEEEHHHhhhcCHHHHHHHHHHHhC-CCeEEEEEec-cccCHhhCCCCCCCC
Confidence 45677776653 35788899989999877444443 1122 2367777776 4211 1112 23455
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCC
Q 048797 71 KCGANLAEIGALLEAALASQLGVVGISFHIGSGATD 106 (240)
Q Consensus 71 kFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~ 106 (240)
..|++..|+.++++.+. +.+++|+.+--=+-..|
T Consensus 257 pgGlt~~e~~~~l~~l~--~~~vvg~DivEv~P~~D 290 (326)
T 3niq_A 257 IGGMTSLQAQQLVRGLR--GLDLVGADVVEVSPPFD 290 (326)
T ss_dssp SSCBCHHHHHHHHHTTT--TSCEEEEEEECCCGGGC
T ss_pred CCCCCHHHHHHHHHHHc--CCCEEEEEEEEECCCcC
Confidence 89999999999998654 45788888764333344
No 61
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=57.73 E-value=30 Score=27.50 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeCCCC--CC-hHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 048797 78 EIGALLEAALASQLGVVGISFHIGSGA--TD-FGAFDGAISAAKAVFDAASARHGLTDQM 134 (240)
Q Consensus 78 ~~~~~l~~a~~~~l~~~Glh~H~gS~~--~~-~~~~~~~i~~~~~~~~~l~~~~g~~~~~ 134 (240)
.+.+.++.|+++|.+.+.+ |.|... .+ .+.|...++...++.+. +++.|+ .+
T Consensus 85 ~~~~~i~~a~~lG~~~v~~--~~g~~~~~~~~~~~~~~~~~~l~~l~~~-a~~~gv--~l 139 (278)
T 1i60_A 85 EFKGMMETCKTLGVKYVVA--VPLVTEQKIVKEEIKKSSVDVLTELSDI-AEPYGV--KI 139 (278)
T ss_dssp HHHHHHHHHHHHTCCEEEE--ECCBCSSCCCHHHHHHHHHHHHHHHHHH-HGGGTC--EE
T ss_pred HHHHHHHHHHHcCCCEEEE--ecCCCCCCCCHHHHHHHHHHHHHHHHHH-HHhcCC--EE
Confidence 3455666677777766555 444432 22 44566666666666666 666777 55
No 62
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=57.47 E-value=5.6 Score=30.18 Aligned_cols=89 Identities=11% Similarity=0.135 Sum_probs=49.8
Q ss_pred CCcEEEcCCC---CCH-HHHHHHHHCCCCc-c----CHHHHccccCCCCcEEEEEeeCCCCCCc--ccCCC--CCCCCCC
Q 048797 9 GKSVSLTVAL---RNE-NGLAEALGSNFDY-A----SQAEIKGKWHPRCDLLIRIKALDDCKAV--CPQAQ--DSKCGAN 75 (240)
Q Consensus 9 ~~~Ii~~gp~---K~~-~~l~~A~~~gv~~-~----s~~EL~~~~~~~~~v~lRi~~~~~~~~~--~~~~~--~skFG~~ 75 (240)
.++|+|.|.- -+- +.+.+|++.- .. + ++++.+ ++.. .+.+.++.-..+.++. .-+++ --|+|++
T Consensus 26 ~~kIvf~Gs~GvCtPFaeL~~YaiR~~-~~~FiP~~d~e~a~-~l~~-~~~G~~~~~~~~~~~D~vVllGGLAMPk~~v~ 102 (157)
T 2r47_A 26 AERIGFAGVPGVCTPFAQLFAYAVRDK-DNIFIPNTDFSKAR-KLEV-TEYGVELGEISPGNVDVLVLLGGLSMPGIGSD 102 (157)
T ss_dssp CSEEEEEECTTTTHHHHHHHHHHTTTS-EEEEEETTCGGGCE-EEEE-ETTEEEEEEECCCCEEEEEEEGGGGSTTTSCC
T ss_pred CCeEEEECCCeeecCHHhhheeeeeCC-ceEEcCCCChhHce-EEEE-ecCceEeccccCCCCCEEEEeccccCCCCCCC
Confidence 6889998763 333 4557777762 32 2 333332 2211 1135554321111111 11221 1189999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEee
Q 048797 76 LAEIGALLEAALASQLGVVGISFHI 100 (240)
Q Consensus 76 ~~~~~~~l~~a~~~~l~~~Glh~H~ 100 (240)
+|++.++++...+.+-+++|++|..
T Consensus 103 ~e~v~~li~ki~~~~~kiiGvCFms 127 (157)
T 2r47_A 103 IEDVKKLVEDALEEGGELMGLCYMD 127 (157)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHhhcCCCCEEEEEhHH
Confidence 9999999988755556799999863
No 63
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=55.64 E-value=14 Score=29.90 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeCCC-----CCC-hHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 77 AEIGALLEAALASQLGVVGISFHIGSG-----ATD-FGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~gS~-----~~~-~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+.+.+.++.|+++|.+.+.+.+|.|.. ..+ .+.+...++...++.+. +++.|+
T Consensus 88 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-a~~~Gv 146 (294)
T 3vni_A 88 AFYTDLLKRLYKLDVHLIGGALYSYWPIDYTKTIDKKGDWERSVESVREVAKV-AEACGV 146 (294)
T ss_dssp HHHHHHHHHHHHHTCCEEEESTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHH-HHHTTC
T ss_pred HHHHHHHHHHHHhCCCeeeccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 345667888899998877666776542 122 35677777777777776 777776
No 64
>2a0m_A Arginase superfamily protein; structural genomics, PSI, protein structure initia structural genomics of pathogenic protozoa consortium; 1.60A {Trypanosoma cruzi} SCOP: c.42.1.1
Probab=55.38 E-value=52 Score=27.57 Aligned_cols=100 Identities=10% Similarity=-0.041 Sum_probs=62.3
Q ss_pred CCCCcEEEcCCC---CCHHHHHHHHHCCCCccCHHHHc---------cccCCC-CcEEEEEeeCCCC-CCccc-CCCCCC
Q 048797 7 VSGKSVSLTVAL---RNENGLAEALGSNFDYASQAEIK---------GKWHPR-CDLLIRIKALDDC-KAVCP-QAQDSK 71 (240)
Q Consensus 7 ~~~~~Ii~~gp~---K~~~~l~~A~~~gv~~~s~~EL~---------~~~~~~-~~v~lRi~~~~~~-~~~~~-~~~~sk 71 (240)
+.+++++.-|-- .++++++.+.+.|+.+++.+|+. ...... -+|.|=+.. +.- .+..+ .++...
T Consensus 175 ~~~~~~~~iGiR~~~~~~~e~~~~~~~g~~~~~~~~i~~~~v~~~l~~~~~~~~~~vylS~Di-DvLDpa~aPgtgtp~p 253 (316)
T 2a0m_A 175 FSGKRFVEFACQGSQCGALHAQYVRDHQGHLMWLSEVRKKGAVAALEDAFGLTGKNTFFSFDV-DSLKSSDMPGVSCPAA 253 (316)
T ss_dssp CCGGGEEEEEECTTTSCHHHHHHHHHTTCEEEEHHHHHHHCHHHHHHHHHHHHCSSEEEEEEG-GGBBTTTCCCBSSCBS
T ss_pred CCCceEEEEEeCCCCCCHHHHHHHHHcCCeEEEHHHHhhhHHHHHHHHHHhhCCCeEEEEEcc-ccCccccCCCCCCCCC
Confidence 456788776543 45788999999999877544442 111110 357777766 421 11111 233558
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChH
Q 048797 72 CGANLAEIGALLEAALASQLGVVGISFHIGSGATDFG 108 (240)
Q Consensus 72 FG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~ 108 (240)
.|++..|+.++++.+.+. .+++|+.+--=+-..|..
T Consensus 254 GGlt~~e~~~il~~l~~~-~~vvg~DivEv~P~~D~~ 289 (316)
T 2a0m_A 254 VGLSAQEAFDMCFLAGKT-PTVMMMDMSELNPLVEEY 289 (316)
T ss_dssp SCBCHHHHHHHHHHHHHC-TTEEEEEEECBCTTTCCS
T ss_pred CCCCHHHHHHHHHHHHcC-CCEEEEEEEEECCCCCcc
Confidence 999999999999987543 467888776445445544
No 65
>3lhl_A Putative agmatinase; protein structure initiative II(PSI II), nysgxrc structural genomics, NEW YORK SGX research center for struc genomics; 2.30A {Clostridium difficile}
Probab=55.36 E-value=87 Score=25.79 Aligned_cols=98 Identities=14% Similarity=0.107 Sum_probs=60.4
Q ss_pred CCCcEEEcCC-CCCHHHHHHHHHC-CCCcc-----CHHHHccccCCCCcEEEEEeeCCCC-CCccc-CCCCCCCCCCHHH
Q 048797 8 SGKSVSLTVA-LRNENGLAEALGS-NFDYA-----SQAEIKGKWHPRCDLLIRIKALDDC-KAVCP-QAQDSKCGANLAE 78 (240)
Q Consensus 8 ~~~~Ii~~gp-~K~~~~l~~A~~~-gv~~~-----s~~EL~~~~~~~~~v~lRi~~~~~~-~~~~~-~~~~skFG~~~~~ 78 (240)
+++++++-|. ..++++.+++.+. |+.++ ..+++.+... ..+|.|=+.. +.- .+..+ .++....|++..|
T Consensus 149 ~~~~i~~iGiR~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~vylSiDi-DvlDpa~aPgtgtp~pgGlt~~e 226 (287)
T 3lhl_A 149 GDNKIFQFGIRSGTKEEFKFATEEKHTYMEIGGIDTFENIVNMLN-GKNIYLTIDL-DVLDASVFPGTGTPEPGGVNYRE 226 (287)
T ss_dssp CTTSEEEEEECBCCHHHHHHHHTSCSSEEEETCCTTHHHHHHHTT-TCEEEEEEEG-GGBCTTTCCSBSSCCSSCBCHHH
T ss_pred CcccEEEEEcCCCCHHHHHHHHhcCCCEEEecHHhHHHHHHHHcC-CCcEEEEEec-CcCCHhhCCCCCCCCCCCCCHHH
Confidence 5677776554 2467888888877 66554 3333333332 2367777766 421 11111 2335589999999
Q ss_pred HHHHHHHHHhCCCcEEEEEEeeCCCCCCh
Q 048797 79 IGALLEAALASQLGVVGISFHIGSGATDF 107 (240)
Q Consensus 79 ~~~~l~~a~~~~l~~~Glh~H~gS~~~~~ 107 (240)
+.++++.+.+.+.+++|+.+=--+-..|.
T Consensus 227 ~~~~l~~l~~~~~~vvg~DivE~~P~~D~ 255 (287)
T 3lhl_A 227 FQEIFKIIKNSNINIVGCDIVELSPDYDT 255 (287)
T ss_dssp HTHHHHHHHTSCCEEEEEEEECBCGGGCT
T ss_pred HHHHHHHHHhCCCCEEEEEEEEECCCCCC
Confidence 99999887655678899887644444443
No 66
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=54.25 E-value=34 Score=27.54 Aligned_cols=51 Identities=16% Similarity=-0.009 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeCCCC------CChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 77 AEIGALLEAALASQLGVVGISFHIGSGA------TDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~gS~~------~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+.+.+.++.|+++|.+.+-+ |.|... ...+.|.+.++...++.+. +++.|+
T Consensus 104 ~~~~~~i~~a~~lGa~~v~~--~~g~~~~~~~~p~~~~~~~~~~~~l~~l~~~-a~~~Gv 160 (287)
T 3kws_A 104 DTMKEIIAAAGELGSTGVII--VPAFNGQVPALPHTMETRDFLCEQFNEMGTF-AAQHGT 160 (287)
T ss_dssp HHHHHHHHHHHHTTCSEEEE--CSCCTTCCSBCCSSHHHHHHHHHHHHHHHHH-HHHTTC
T ss_pred HHHHHHHHHHHHcCCCEEEE--ecCcCCcCCCCCCHHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 35666788888899876544 555322 2446677777777777776 777777
No 67
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=52.78 E-value=47 Score=27.21 Aligned_cols=52 Identities=8% Similarity=-0.114 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 76 LAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 76 ~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
.+.+.+.++.|+++|.+.+-+ |.+....+.+.|...++...++.+. +++.|+
T Consensus 107 ~~~~~~~i~~A~~lG~~~v~~--~~~~~~~~~~~~~~~~~~l~~l~~~-a~~~Gv 158 (303)
T 3l23_A 107 MEYWKATAADHAKLGCKYLIQ--PMMPTITTHDEAKLVCDIFNQASDV-IKAEGI 158 (303)
T ss_dssp HHHHHHHHHHHHHTTCSEEEE--CSCCCCCSHHHHHHHHHHHHHHHHH-HHHTTC
T ss_pred HHHHHHHHHHHHHcCCCEEEE--CCCCCCCCHHHHHHHHHHHHHHHHH-HHHCCC
Confidence 345677888899999887655 3333334677888888888888887 888888
No 68
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=52.31 E-value=23 Score=28.48 Aligned_cols=53 Identities=15% Similarity=0.062 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEee--CC-----CCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 77 AEIGALLEAALASQLGVVGISFHI--GS-----GATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~--gS-----~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+.+.+.++.|+++|.+.+.++.|. |. .....+.|...++...++.+. +++.|+
T Consensus 88 ~~~~~~i~~a~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~-a~~~gv 147 (290)
T 2qul_A 88 EYVKRLLDDCHLLGAPVFAGLTFCAWPQSPPLDMKDKRPYVDRAIESVRRVIKV-AEDYGI 147 (290)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEEEESSCCCCTTCCCCHHHHHHHHHHHHTTHHH-HHHHTC
T ss_pred HHHHHHHHHHHHcCCCEEEeeccccCCcccCCCcccHHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 456778888999998877666665 32 113356677777777777766 665565
No 69
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Probab=49.59 E-value=60 Score=26.83 Aligned_cols=47 Identities=11% Similarity=0.174 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEEee----CCCCCChHHHHHHHHHHHH
Q 048797 71 KCGANLAEIGALLEAALASQLGVVGISFHI----GSGATDFGAFDGAISAAKA 119 (240)
Q Consensus 71 kFG~~~~~~~~~l~~a~~~~l~~~Glh~H~----gS~~~~~~~~~~~i~~~~~ 119 (240)
.-=++++|+.+-...|.+.|-.+ +|+|+ |....|++.|.+.++..++
T Consensus 24 ~lPvTpeEia~~A~~~~~AGAai--vHlHvRd~~G~~s~d~~~~~e~~~~IR~ 74 (275)
T 3no5_A 24 AVPITVSEQVESTQAAFEAGATL--VHLHVRNDDETPTSNPDRFALVLEGIRK 74 (275)
T ss_dssp TSCCSHHHHHHHHHHHHHHTCCE--EEECEECTTSCEECCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHccCcE--EEEeecCCCCCcCCCHHHHHHHHHHHHH
Confidence 45577888777777777778754 78886 5556789999998887655
No 70
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=48.94 E-value=29 Score=25.47 Aligned_cols=35 Identities=11% Similarity=0.016 Sum_probs=29.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCcEEEE-EEeeCCCC
Q 048797 70 SKCGANLAEIGALLEAALASQLGVVGI-SFHIGSGA 104 (240)
Q Consensus 70 skFG~~~~~~~~~l~~a~~~~l~~~Gl-h~H~gS~~ 104 (240)
..|=+++++..++.+.+.+.|++++|+ |-|.++..
T Consensus 53 ~~f~~dp~~~~~~~~~~~~~g~~ivG~~HSHP~~~~ 88 (146)
T 2kks_A 53 EHFSMDPREQLTAVKDMRKNGWVMLGNFHSHPATPA 88 (146)
T ss_dssp SSCCCCHHHHHHHHHHHHHHTCEEEEEEEEESSSCS
T ss_pred ceEEECHHHHHHHHHHHHHCCCEEEEEEeCCCcCCC
Confidence 379999999988888888889987774 99997754
No 71
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=48.81 E-value=47 Score=28.25 Aligned_cols=47 Identities=17% Similarity=0.187 Sum_probs=34.2
Q ss_pred ccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeC
Q 048797 43 KWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGISFHIG 101 (240)
Q Consensus 43 ~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~g 101 (240)
..+++..|++|+++ .+.. .=|.+.++..++++.+.+.|++. ||+|.|
T Consensus 215 avG~d~pV~vRls~-~~~~---------~~g~~~~~~~~la~~L~~~Gvd~--i~vs~g 261 (349)
T 3hgj_A 215 VVPRELPLFVRVSA-TDWG---------EGGWSLEDTLAFARRLKELGVDL--LDCSSG 261 (349)
T ss_dssp HSCTTSCEEEEEES-CCCS---------TTSCCHHHHHHHHHHHHHTTCCE--EEEECC
T ss_pred HhcCCceEEEEecc-cccc---------CCCCCHHHHHHHHHHHHHcCCCE--EEEecC
Confidence 44566779999998 4311 22788899999998888889764 666654
No 72
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=48.28 E-value=30 Score=27.71 Aligned_cols=57 Identities=7% Similarity=0.029 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCC--C--CCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGS--G--ATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS--~--~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
.++.+++.++.+.+++.|+++..+.+|..- + ..+++.+.++++...+.++. ++++|.
T Consensus 43 ~~~~~~~~~~~~~l~~~gl~~~~~~~h~~~~~~~~~~~~~~r~~~~~~~~~~i~~-A~~lG~ 103 (287)
T 2x7v_A 43 LPSDEAATKFKREMKKHGIDWENAFCHSGYLINLASPKDDIWQKSVELLKKEVEI-CRKLGI 103 (287)
T ss_dssp CCCHHHHHHHHHHHHHHTCCGGGEEEECCTTCCTTCSSHHHHHHHHHHHHHHHHH-HHHHTC
T ss_pred CCCHHHHHHHHHHHHHcCCCcceeEEecccccccCCCCHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 345667777888888889986444555321 1 13566777788888777777 777776
No 73
>3pzl_A Agmatine ureohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.70A {Thermoplasma volcanium GSS1}
Probab=48.20 E-value=18 Score=30.54 Aligned_cols=88 Identities=13% Similarity=0.140 Sum_probs=56.5
Q ss_pred CCCcEEEcCCC-CCHHHHHHHHHCCCCccCHHHHc--------cccC-CCCcEEEEEeeCCCC-CCccc-CCCCCCCCCC
Q 048797 8 SGKSVSLTVAL-RNENGLAEALGSNFDYASQAEIK--------GKWH-PRCDLLIRIKALDDC-KAVCP-QAQDSKCGAN 75 (240)
Q Consensus 8 ~~~~Ii~~gp~-K~~~~l~~A~~~gv~~~s~~EL~--------~~~~-~~~~v~lRi~~~~~~-~~~~~-~~~~skFG~~ 75 (240)
+++++++-|.- .++++.+++.+.|+.+++.+|+. .+.. ...+|.|=+.. +.- .+..+ .+.....|++
T Consensus 172 ~~~~~~~iGiR~~~~~e~~~~~~~gi~~~~~~ei~~~g~~~v~~~i~~~~~~vylSiDi-DvLDpa~aPgtgtp~pgGlt 250 (313)
T 3pzl_A 172 GEGRITSIGIRSVSREEFEDPDFRKVSFISSFDVKKNGIDKYIEEVDRKSRRVYISVDM-DGIDPAYAPAVGTPEPFGLA 250 (313)
T ss_dssp CSSSEEEEEECBCCHHHHTSGGGGGSEEEEHHHHHHHCSHHHHHHHHHHCSEEEEEEEG-GGBCTTTCTTBSSCCSSCBC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCEEEEHHHHhhhhHHHHHHHHhccCCeEEEEEec-cccChhhCCCCCCCCCCCCC
Confidence 46677766653 36778888888898777555554 1111 12357777766 421 12222 2335589999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEe
Q 048797 76 LAEIGALLEAALASQLGVVGISFH 99 (240)
Q Consensus 76 ~~~~~~~l~~a~~~~l~~~Glh~H 99 (240)
..|+..+++.+.+ +++|+.+=
T Consensus 251 ~~e~~~il~~l~~---~vvg~Div 271 (313)
T 3pzl_A 251 DTDVRRLIERLSY---KAVGFDIV 271 (313)
T ss_dssp HHHHHHHHHHHGG---GEEEEEEE
T ss_pred HHHHHHHHHHHhc---CeEEEEEE
Confidence 9999999998765 78888775
No 74
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=47.67 E-value=44 Score=26.45 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 80 GALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 80 ~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
.++.+.+++.||++.++|....-...+++...+.++..++.++. ++.+|.
T Consensus 49 ~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-a~~lG~ 98 (278)
T 1i60_A 49 DDLAEYFQTHHIKPLALNALVFFNNRDEKGHNEIITEFKGMMET-CKTLGV 98 (278)
T ss_dssp HHHHHHHHTSSCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHH-HHHHTC
T ss_pred HHHHHHHHHcCCCeeeeccccccccCCHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 33444555667777666665421113666666666666666655 554443
No 75
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=47.41 E-value=33 Score=27.74 Aligned_cols=52 Identities=12% Similarity=0.020 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhCCCcEEEEEEee-----CCCC--CChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 78 EIGALLEAALASQLGVVGISFHI-----GSGA--TDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 78 ~~~~~l~~a~~~~l~~~Glh~H~-----gS~~--~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
++.++.+.+++.||++.++|... ..+. .+++...+.++.+++.++. ++++|.
T Consensus 69 ~~~~~~~~l~~~gl~~~~~~~~~p~~~~~~~l~~~d~~~r~~~~~~~~~~i~~-A~~lG~ 127 (290)
T 2zvr_A 69 DWNEVKILSEELNLPICAIGTGQAYLADGLSLTHPNDEIRKKAIERVVKHTEV-AGMFGA 127 (290)
T ss_dssp CHHHHHHHHHHHTCCEEEEECTHHHHTTCCCTTCSSHHHHHHHHHHHHHHHHH-HHHHTC
T ss_pred hHHHHHHHHHHcCCeEEEEeccCccccCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 34455556677899998998721 1122 3555677777777777777 666665
No 76
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=47.02 E-value=16 Score=30.27 Aligned_cols=52 Identities=17% Similarity=0.168 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeCC-C-CCC----hHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 78 EIGALLEAALASQLGVVGISFHIGS-G-ATD----FGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 78 ~~~~~l~~a~~~~l~~~Glh~H~gS-~-~~~----~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
.+.+.++.|+++|.+.+.+|++..+ . ..+ .+.|...++...++.+. +++.|+
T Consensus 115 ~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-a~~~Gv 172 (316)
T 3qxb_A 115 HLKRAIDMTAAMEVPATGMPFGSYSAADALNPARREEIYAIARDMWIELAAY-AKRQGL 172 (316)
T ss_dssp HHHHHHHHHHHTTCCEEEECCBBCCHHHHTCHHHHHHHHHHHHHHHHHHHHH-HHHHTC
T ss_pred HHHHHHHHHHHcCCCEEEecCCCcCccccCCcccHHHHHHHHHHHHHHHHHH-HHhcCC
Confidence 4566788899999988877665411 0 011 23466666666677766 666777
No 77
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=46.98 E-value=36 Score=26.96 Aligned_cols=52 Identities=21% Similarity=0.151 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 78 EIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 78 ~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
++.++.+.+++.||++.++|.+..-...+++...++++...+.++. ++.+|.
T Consensus 46 ~~~~~~~~l~~~gl~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~-a~~lG~ 97 (275)
T 3qc0_A 46 GLGEAGRIVRANGLKLTGLCRGGFFPAPDASGREKAIDDNRRAVDE-AAELGA 97 (275)
T ss_dssp CHHHHHHHHHHHTCEESCEEEEECCCCSSHHHHHHHHHHHHHHHHH-HHHTTC
T ss_pred CHHHHHHHHHHcCCceEEeecCCCcCCCCHHHHHHHHHHHHHHHHH-HHHhCC
Confidence 3444455555667776666655433335666666666666666666 555554
No 78
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=46.65 E-value=71 Score=25.60 Aligned_cols=53 Identities=17% Similarity=0.044 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEEE---ee-CCC--------CC-ChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 77 AEIGALLEAALASQLGVVGISF---HI-GSG--------AT-DFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~---H~-gS~--------~~-~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+.+.+.++.|+++|.+.+-+|. +. |.. .. ..+.|...++...++.+. +++.|+
T Consensus 90 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-a~~~gv 155 (301)
T 3cny_A 90 EAFEKHCQYLKAINAPVAVVSEQTYTIQRSDTANIFKDKPYFTDKEWDEVCKGLNHYGEI-AAKYGL 155 (301)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECTTCCTTCSSCCTTTCCCCCCHHHHHHHHHHHHHHHHH-HHHTTC
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCccccCcccCCcccccccCcHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 4567788889999988766653 12 321 11 456777777777777777 777777
No 79
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=46.50 E-value=45 Score=26.39 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeC
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIG 101 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~g 101 (240)
..+.+++.++.+.+++.||++..+|....
T Consensus 59 ~~~~~~~~~~~~~l~~~gl~i~~~~~~~~ 87 (262)
T 3p6l_A 59 NLDAQTQKEIKELAASKGIKIVGTGVYVA 87 (262)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEEEEECC
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEEeccCC
Confidence 45667777777778888888888877643
No 80
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=46.17 E-value=12 Score=23.30 Aligned_cols=21 Identities=33% Similarity=0.313 Sum_probs=19.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCC
Q 048797 71 KCGANLAEIGALLEAALASQL 91 (240)
Q Consensus 71 kFG~~~~~~~~~l~~a~~~~l 91 (240)
|||++.+++..+|++.++.|+
T Consensus 34 kygV~kdeV~~~LrrLe~KGL 54 (59)
T 2xvc_A 34 VYGVEKQEVVKLLEALKNKGL 54 (59)
T ss_dssp HHCCCHHHHHHHHHHHHHTTS
T ss_pred HhCCCHHHHHHHHHHHHHCCC
Confidence 999999999999999988886
No 81
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=45.19 E-value=49 Score=26.57 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeCCC--CCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 77 AEIGALLEAALASQLGVVGISFHIGSG--ATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~gS~--~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+++.++.+.+++.||++.++|...... ..+++...+.++...+.++. +..+|.
T Consensus 64 ~~~~~~~~~l~~~gl~v~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~-a~~lGa 118 (287)
T 3kws_A 64 GRVNEIKQALNGRNIKVSAICAGFKGFILSTDPAIRKECMDTMKEIIAA-AGELGS 118 (287)
T ss_dssp GGHHHHHHHHTTSSCEECEEECCCCSCTTBSSHHHHHHHHHHHHHHHHH-HHHTTC
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCcCCCCCHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 456667777788999998887632111 24777788888888888887 777776
No 82
>1r85_A Endo-1,4-beta-xylanase; hydrolase; HET: GOL; 1.45A {Geobacillus stearothermophilus} SCOP: c.1.8.3 PDB: 1hiz_A* 1r87_A* 3mmd_A* 1r86_A
Probab=44.09 E-value=34 Score=29.62 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCC--CcEEEEEEeeCCCCCChHHHHHHHHH
Q 048797 77 AEIGALLEAALASQ--LGVVGISFHIGSGATDFGAFDGAISA 116 (240)
Q Consensus 77 ~~~~~~l~~a~~~~--l~~~Glh~H~gS~~~~~~~~~~~i~~ 116 (240)
+...++++..++.| ++.+|++.|.+....+++.++++++.
T Consensus 212 ~~~~~~v~~l~~~g~piDgIG~Q~H~~~~~p~~~~~~~~l~~ 253 (379)
T 1r85_A 212 TALYNLVKQLKEEGVPIDGIGHQSHIQIGWPSEAEIEKTINM 253 (379)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECCEECSSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCceeEEEEeEEecCCCCCHHHHHHHHHH
Confidence 34556666666766 57889988886654566666555543
No 83
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=43.43 E-value=45 Score=26.80 Aligned_cols=51 Identities=20% Similarity=0.293 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeCCCCC-ChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 77 AEIGALLEAALASQLGVVGISFHIGSGAT-DFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~gS~~~-~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+.+.+.++.|+++|.+.+. +|.|..-. ..+.|.+.++...++.+. +++.|+
T Consensus 102 ~~~~~~i~~a~~lG~~~v~--~~~G~~~~~~~~~~~~~~~~l~~l~~~-a~~~Gv 153 (290)
T 3tva_A 102 AEMKEISDFASWVGCPAIG--LHIGFVPESSSPDYSELVRVTQDLLTH-AANHGQ 153 (290)
T ss_dssp HHHHHHHHHHHHHTCSEEE--ECCCCCCCTTSHHHHHHHHHHHHHHHH-HHTTTC
T ss_pred HHHHHHHHHHHHcCCCEEE--EcCCCCcccchHHHHHHHHHHHHHHHH-HHHcCC
Confidence 4567788889999987655 45553211 346677777777777777 777887
No 84
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=43.36 E-value=34 Score=27.33 Aligned_cols=51 Identities=20% Similarity=0.122 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeCCC--CCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 77 AEIGALLEAALASQLGVVGISFHIGSG--ATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~gS~--~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+.+.+.++.|+++|.+.+. +|.|.. ....+.|.+.++...++.+. +++.|+
T Consensus 93 ~~~~~~i~~A~~lGa~~v~--~~~g~~~~~~~~~~~~~~~~~l~~l~~~-a~~~Gv 145 (269)
T 3ngf_A 93 DNVDIALHYALALDCRTLH--AMSGITEGLDRKACEETFIENFRYAADK-LAPHGI 145 (269)
T ss_dssp HHHHHHHHHHHHTTCCEEE--CCBCBCTTSCHHHHHHHHHHHHHHHHHH-HGGGTC
T ss_pred HHHHHHHHHHHHcCCCEEE--EccCCCCCCCHHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 4567788889999987654 556621 11234577777777777776 777776
No 85
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=43.27 E-value=59 Score=26.69 Aligned_cols=51 Identities=2% Similarity=-0.143 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 77 AEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+.+.+.++.|+++|.+.+-++.+ ....+.+.|...++...++.+. +++.|+
T Consensus 114 ~~~~~~i~~A~~lG~~~v~~~~~--~~~~~~~~~~~~~~~l~~l~~~-a~~~Gv 164 (305)
T 3obe_A 114 EFWKKATDIHAELGVSCMVQPSL--PRIENEDDAKVVSEIFNRAGEI-TKKAGI 164 (305)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCC--CCCSSHHHHHHHHHHHHHHHHH-HHTTTC
T ss_pred HHHHHHHHHHHHcCCCEEEeCCC--CCCCCHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 45777888899999886665422 2224667888888888888877 778887
No 86
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=42.80 E-value=32 Score=27.35 Aligned_cols=50 Identities=16% Similarity=0.050 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeCCCCCCh-HHHHHHHHHHHHHHHHHHHhCCC
Q 048797 78 EIGALLEAALASQLGVVGISFHIGSGATDF-GAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 78 ~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~-~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
++.++.+.+++.||++.++|+... ..++ +.++++++..++.++. ++.+|.
T Consensus 48 ~~~~~~~~l~~~gl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~-A~~lG~ 98 (281)
T 3u0h_A 48 GDAAVEAMFQRRGLVLANLGLPLN--LYDSEPVFLRELSLLPDRARL-CARLGA 98 (281)
T ss_dssp CHHHHHHHHHTTTCEECCEECCSC--TTSCHHHHHHHHHTHHHHHHH-HHHTTC
T ss_pred CHHHHHHHHHHcCCceEEeccccc--ccCCCHHHHHHHHHHHHHHHH-HHHcCC
Confidence 355566677788999988886532 2222 3467777777888887 888887
No 87
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=42.48 E-value=55 Score=25.67 Aligned_cols=50 Identities=8% Similarity=-0.071 Sum_probs=33.4
Q ss_pred HHHHHHHHhCCCcEEEEEEeeCC-------CCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 80 GALLEAALASQLGVVGISFHIGS-------GATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 80 ~~~l~~a~~~~l~~~Glh~H~gS-------~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
.++.+.+++.||++.++|...+. ...+++...+.++..++.++. ++++|.
T Consensus 43 ~~~~~~l~~~gl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~-a~~lG~ 99 (260)
T 1k77_A 43 LQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEAHADIDLALEY-ALALNC 99 (260)
T ss_dssp HHHHHHHHHTTCEEEEEECCCCCGGGTCSCSTTCTTCHHHHHHHHHHHHHH-HHHTTC
T ss_pred HHHHHHHHHcCCceEEEecCCcccccccCCCCCChhHHHHHHHHHHHHHHH-HHHcCC
Confidence 34455567889999998875421 123566667777777777777 777776
No 88
>2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7
Probab=42.10 E-value=1.8e+02 Score=25.59 Aligned_cols=108 Identities=11% Similarity=0.037 Sum_probs=63.4
Q ss_pred HHHHHHHHCC-CCc--c---CHHHHc----cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHH-HHHhCC
Q 048797 22 NGLAEALGSN-FDY--A---SQAEIK----GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLE-AALASQ 90 (240)
Q Consensus 22 ~~l~~A~~~g-v~~--~---s~~EL~----~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~-~a~~~~ 90 (240)
+.|+.+.+.+ +.+ + |.+-++ .....+..|+|-+.+ +.. ..+++ --|++++++...+. .+++.+
T Consensus 3 ~ll~~~~~~~a~av~afn~~n~e~i~Ail~aAee~~sPVIi~~s~-~~v---~~~gG--Y~g~~~~~~~~~v~~~A~~~~ 76 (420)
T 2fiq_A 3 TLIARHKAGEHIGICSVCSAHPLVIEAALAFDRNSTRKVLIEATS-NQV---NQFGG--YTGMTPADFREFVFAIADKVG 76 (420)
T ss_dssp HHHHHHHTTCCBCEEEECCCCHHHHHHHHHHTTTSCCCEEEEEET-TTB---STTCT--TTTBCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEcCh-hhh---hhccC--CCCCCHHHHHHHHHHHHHHcC
Confidence 4556666555 343 2 777776 223345789999987 321 11233 34777888877665 456667
Q ss_pred CcE--EEEEEeeC-CCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCCccc
Q 048797 91 LGV--VGISFHIG-SGATDFGAFDGAISAAKAVFDAASARHGLTDQMRAKH 138 (240)
Q Consensus 91 l~~--~Glh~H~g-S~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~~ld 138 (240)
+.. +-||.--| +....-..-.++++.+++.+.. +-+.|+ +-=+||
T Consensus 77 vP~~~VaLHlDHg~~~~w~~~~~~~am~~a~e~i~~-aI~aGF--tSVMiD 124 (420)
T 2fiq_A 77 FARERIILGGDHLGPNCWQQENVDAAMEKSVELVKA-YVRAGF--SKIHLD 124 (420)
T ss_dssp CCGGGEEEEEEEESSGGGTTSBHHHHHHHHHHHHHH-HHHTTC--CEEEEC
T ss_pred cCcceEEEECCCCCCccccccchhhhhhhHHHHHHH-HHHhCC--CEEEEC
Confidence 763 77888554 4322222235677777777776 556788 544555
No 89
>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A
Probab=41.73 E-value=46 Score=27.10 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEEeeCCC--CCChHHHHHHHHHHHHHH
Q 048797 75 NLAEIGALLEAALASQLGVVGISFHIGSG--ATDFGAFDGAISAAKAVF 121 (240)
Q Consensus 75 ~~~~~~~~l~~a~~~~l~~~Glh~H~gS~--~~~~~~~~~~i~~~~~~~ 121 (240)
++++..++++.|.+.|++-+++.=|.-+. ..+.+.+.+.++...+..
T Consensus 18 ~~~~sl~~~~~a~~~G~~~i~~T~H~~~~~~~~~~~~i~~~~~~l~~~~ 66 (262)
T 3qy7_A 18 DSADSIEMARAAVRQGIRTIIATPHHNNGVYKNEPAAVREAADQLNKRL 66 (262)
T ss_dssp SHHHHHHHHHHHHHTTCCEEECCCBSEETTEECCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 46788889999999999999997776432 235566666666555543
No 90
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=41.08 E-value=81 Score=25.20 Aligned_cols=55 Identities=9% Similarity=-0.057 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEE-eeC--CCCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 75 NLAEIGALLEAALASQLGVVGISF-HIG--SGATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 75 ~~~~~~~~l~~a~~~~l~~~Glh~-H~g--S~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+.+++.++.+.+++.|+++...|. ... -...+++...++++..++.++. ++++|.
T Consensus 45 ~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~-a~~lG~ 102 (294)
T 3vni_A 45 SDIQINELKACAHGNGITLTVGHGPSAEQNLSSPDPDIRKNAKAFYTDLLKR-LYKLDV 102 (294)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCCGGGCTTCSCHHHHHHHHHHHHHHHHH-HHHHTC
T ss_pred CHHHHHHHHHHHHHcCCeEEEeecCCCCcCCCCCCHHHHHHHHHHHHHHHHH-HHHhCC
Confidence 466788888888999999877432 111 1124677778888888888877 666665
No 91
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=40.48 E-value=90 Score=25.45 Aligned_cols=52 Identities=13% Similarity=-0.059 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhCCCcEEEEEEee-C-----CCCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 78 EIGALLEAALASQLGVVGISFHI-G-----SGATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 78 ~~~~~l~~a~~~~l~~~Glh~H~-g-----S~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
++.++.+.+++.||++.+++... + -...|++..+++++..++.++. ++++|.
T Consensus 71 ~~~~~~~~l~~~Gl~i~~~~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~-A~~lGa 128 (316)
T 3qxb_A 71 RAIAYAKAFRKAGLTIESTFGGLASYTYNHFLAPTLELQSLGYQHLKRAIDM-TAAMEV 128 (316)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCHHHHTSCBTTCSSHHHHHHHHHHHHHHHHH-HHHTTC
T ss_pred HHHHHHHHHHHcCCeEEEeeccccccccccCCCCCHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 55666677888999998876421 1 1124677788888888888888 888886
No 92
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=38.88 E-value=40 Score=26.98 Aligned_cols=53 Identities=9% Similarity=0.013 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeCCCC---CChHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 048797 78 EIGALLEAALASQLGVVGISFHIGSGA---TDFGAFDGAISAAKAVFDAASARHGLTDQMR 135 (240)
Q Consensus 78 ~~~~~l~~a~~~~l~~~Glh~H~gS~~---~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~ 135 (240)
.+.+.++.|+++|.+.+ .+|.|... ...+.|...++...++.+. +++.|+ .+-
T Consensus 85 ~~~~~i~~A~~lG~~~v--~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~-a~~~Gv--~l~ 140 (286)
T 3dx5_A 85 KCEQLAILANWFKTNKI--RTFAGQKGSADFSQQERQEYVNRIRMICEL-FAQHNM--YVL 140 (286)
T ss_dssp HHHHHHHHHHHHTCCEE--EECSCSSCGGGSCHHHHHHHHHHHHHHHHH-HHHTTC--EEE
T ss_pred HHHHHHHHHHHhCCCEE--EEcCCCCCcccCcHHHHHHHHHHHHHHHHH-HHHhCC--EEE
Confidence 45667788888888654 45666532 3456788888888888887 888898 663
No 93
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=38.73 E-value=51 Score=25.85 Aligned_cols=51 Identities=27% Similarity=0.120 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeCCCC--C-ChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 77 AEIGALLEAALASQLGVVGISFHIGSGA--T-DFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~gS~~--~-~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+.+.+.++.|+++|.+.+ .+|.|... . ..+.|...++...++.+. +++.|+
T Consensus 85 ~~~~~~i~~a~~lG~~~v--~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~-a~~~gv 138 (260)
T 1k77_A 85 ADIDLALEYALALNCEQV--HVMAGVVPAGEDAERYRAVFIDNIRYAADR-FAPHGK 138 (260)
T ss_dssp HHHHHHHHHHHHTTCSEE--ECCCCBCCTTSCHHHHHHHHHHHHHHHHHH-HGGGTC
T ss_pred HHHHHHHHHHHHcCCCEE--EECcCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 456778888999998765 55666532 1 235567777777777776 666676
No 94
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=38.51 E-value=40 Score=26.88 Aligned_cols=55 Identities=15% Similarity=0.002 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEEeeCCC----CCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 75 NLAEIGALLEAALASQLGVVGISFHIGSG----ATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 75 ~~~~~~~~l~~a~~~~l~~~Glh~H~gS~----~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+.+++.++.+.+++.|+++..+.+|..-. ..+++.+.++++..++.++. ++.+|.
T Consensus 45 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~-A~~lGa 103 (285)
T 1qtw_A 45 TTQTIDEFKAACEKYHYTSAQILPHDSYLINLGHPVTEALEKSRDAFIDEMQR-CEQLGL 103 (285)
T ss_dssp CHHHHHHHHHHHHHTTCCGGGBCCBCCTTCCTTCSSHHHHHHHHHHHHHHHHH-HHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCceeEEecCCcccccCCCCHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 34555555555666666643333343110 12445555566665555555 555554
No 95
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=38.10 E-value=26 Score=25.94 Aligned_cols=36 Identities=25% Similarity=0.199 Sum_probs=29.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCcEEEE-EEeeCCCC
Q 048797 69 DSKCGANLAEIGALLEAALASQLGVVGI-SFHIGSGA 104 (240)
Q Consensus 69 ~skFG~~~~~~~~~l~~a~~~~l~~~Gl-h~H~gS~~ 104 (240)
...|=+++++..++.+.+++.+++++|+ |-|.++..
T Consensus 54 ~~~f~~dp~~~~~~~~~~~~~g~~ivG~yHSHP~~~~ 90 (153)
T 2kcq_A 54 TRRYELTADDYRAADAAAQEQGLDVVGVYHSHPDHPA 90 (153)
T ss_dssp SCCSSCCCCSHHHHHHHHHHHTCEEEEEEEECSSSSS
T ss_pred CcEEEECHHHHHHHHHHHHHCCCeEEEEEeCCCCCCC
Confidence 3478899988888888888889998886 99997654
No 96
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=37.81 E-value=43 Score=28.66 Aligned_cols=48 Identities=21% Similarity=0.170 Sum_probs=33.7
Q ss_pred ccCCCCcEEEEEeeCCCCCCcccCCCCCCCC-CCHHHHHHHHHHHHhCCCcEEEEEEeeCC
Q 048797 43 KWHPRCDLLIRIKALDDCKAVCPQAQDSKCG-ANLAEIGALLEAALASQLGVVGISFHIGS 102 (240)
Q Consensus 43 ~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG-~~~~~~~~~l~~a~~~~l~~~Glh~H~gS 102 (240)
..+++..|++|+++ .+.. .-| .+.++..++++.+.+.|++ .||+|.|.
T Consensus 221 avg~d~pV~vRis~-~~~~---------~~G~~~~~~~~~la~~L~~~Gvd--~i~vs~g~ 269 (363)
T 3l5l_A 221 VWPENLPLTARFGV-LEYD---------GRDEQTLEESIELARRFKAGGLD--LLSVSVGF 269 (363)
T ss_dssp TSCTTSCEEEEEEE-ECSS---------SCHHHHHHHHHHHHHHHHHTTCC--EEEEEECC
T ss_pred HcCCCceEEEEecc-hhcC---------CCCCCCHHHHHHHHHHHHHcCCC--EEEEecCc
Confidence 44556789999999 4211 125 6678888888888888876 56777654
No 97
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}
Probab=37.78 E-value=82 Score=25.97 Aligned_cols=53 Identities=13% Similarity=-0.067 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhCCCc---EEEE-EEeeCCCC--CChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 77 AEIGALLEAALASQLG---VVGI-SFHIGSGA--TDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~---~~Gl-h~H~gS~~--~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+++.++.+.+++.||+ +..+ |+..+... .+++...++++.+.+.++. ++.+|.
T Consensus 65 ~~~~~l~~~l~~~gL~~~~i~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~-A~~lG~ 123 (335)
T 2qw5_A 65 ENYTNLRHYLDSEGLENVKISTNVGATRTFDPSSNYPEQRQEALEYLKSRVDI-TAALGG 123 (335)
T ss_dssp HHHHHHHHHHHHTTCTTCEEEEECCCCSSSCTTCSSHHHHHHHHHHHHHHHHH-HHHTTC
T ss_pred HHHHHHHHHHHHCCCCcceeEEEeccCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 4566677778889999 8874 44322222 3567777888888888887 777776
No 98
>1ur1_A Endoxylanase; hydrolase, family 10, glycoside hydrolase, hemicellulose, xylan degradation; HET: XYS AHR; 1.43A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uqy_A* 1uqz_A* 1ur2_A* 2cnc_A*
Probab=37.53 E-value=38 Score=29.31 Aligned_cols=40 Identities=18% Similarity=0.246 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhCC--CcEEEEEEeeCCCCCChHHHHHHHHH
Q 048797 77 AEIGALLEAALASQ--LGVVGISFHIGSGATDFGAFDGAISA 116 (240)
Q Consensus 77 ~~~~~~l~~a~~~~--l~~~Glh~H~gS~~~~~~~~~~~i~~ 116 (240)
+...++++..++.| ++.+|++.|.+....+++.++++++.
T Consensus 209 ~~~~~~v~~l~~~g~~iDgiG~Q~H~~~~~p~~~~i~~~l~~ 250 (378)
T 1ur1_A 209 EATVEMIERLQKRGMPIHGLGIQGHLGIDTPPIAEIEKSIIA 250 (378)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECCEEESSCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCcceEEecCcCCCCCCCHHHHHHHHHH
Confidence 34456666666666 68889988886655566665555443
No 99
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A
Probab=37.50 E-value=95 Score=25.72 Aligned_cols=46 Identities=26% Similarity=0.309 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEEee----CCCCCChHHHHHHHHHHHH
Q 048797 72 CGANLAEIGALLEAALASQLGVVGISFHI----GSGATDFGAFDGAISAAKA 119 (240)
Q Consensus 72 FG~~~~~~~~~l~~a~~~~l~~~Glh~H~----gS~~~~~~~~~~~i~~~~~ 119 (240)
-=++++|+.+-...|.+.|-.+ +|+|+ |....|++.|++.++..++
T Consensus 29 lPvTpeEia~~A~~a~~AGAai--vHlHvRd~~G~ps~d~~~~~e~~~~IR~ 78 (282)
T 2y7e_A 29 LPITPEEQAKEAKACFEAGARV--IHLHIREDDGRPSQRLDRFQEAISAIRE 78 (282)
T ss_dssp CCCSHHHHHHHHHHHHHHTEEE--EEECEECTTSCEECCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCcE--EEEeecCCCCCcCCCHHHHHHHHHHHHH
Confidence 4577888877777777778654 78886 4556789999998876554
No 100
>1w32_A Endo-1,4-beta-xylanase A precursor; mutant, calcium ION, thermostable, glycosyle hydrolase, family 10, error prone PCR, hydrolase; 1.2A {Cellvibrio japonicus} SCOP: c.1.8.3 PDB: 1w2p_A 1w2v_A 1w3h_A 1clx_A 1e5n_A* 1xys_A
Probab=37.15 E-value=50 Score=28.15 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhCC--CcEEEEEEeeCCCCCChHHHHHHHH
Q 048797 78 EIGALLEAALASQ--LGVVGISFHIGSGATDFGAFDGAIS 115 (240)
Q Consensus 78 ~~~~~l~~a~~~~--l~~~Glh~H~gS~~~~~~~~~~~i~ 115 (240)
...++++..++.| ++-+|++.|.+....+++.++++++
T Consensus 193 ~~~~~v~~l~~~G~~iDgiG~Q~H~~~~~p~~~~~~~~l~ 232 (348)
T 1w32_A 193 ALVNLVQRLLNNGVPIDGVGFQMHVMNDYPSIANIRQAMQ 232 (348)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECCEEESSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcccEEEeccccCCCCCCHHHHHHHHH
Confidence 3455566666666 5788898888765455555544444
No 101
>1bxb_A Xylose isomerase; xylose metabolism; 2.20A {Thermus thermophilus} SCOP: c.1.15.3 PDB: 1bxc_A
Probab=36.71 E-value=82 Score=26.87 Aligned_cols=54 Identities=17% Similarity=0.029 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeCC-------C--CCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 76 LAEIGALLEAALASQLGVVGISFHIGS-------G--ATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 76 ~~~~~~~l~~a~~~~l~~~Glh~H~gS-------~--~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
.+++.++.+.+++.||++..+|....+ . ..+++...++++.+++.++. ++++|.
T Consensus 68 ~~~~~~l~~~l~~~GL~i~~~~~~~~~~p~~~~g~l~~~d~~~r~~~i~~~~~~i~~-A~~LGa 130 (387)
T 1bxb_A 68 DQIVRRFKKALDETGLKVPMVTANLFSDPAFKDGAFTSPDPWVRAYALRKSLETMDL-GAELGA 130 (387)
T ss_dssp HHHHHHHHHHHHHHTCBCCEEECCCSSSGGGGGCSTTCSSHHHHHHHHHHHHHHHHH-HHHHTC
T ss_pred HHHHHHHHHHHHHhCCEEEEEecCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHH-HHHhCC
Confidence 346666777788889999888854321 1 23566677788888877777 666665
No 102
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=36.43 E-value=51 Score=26.37 Aligned_cols=29 Identities=14% Similarity=0.040 Sum_probs=18.7
Q ss_pred HHHHHHHHHhCCCcEEEEEEeeCCCCCChH
Q 048797 79 IGALLEAALASQLGVVGISFHIGSGATDFG 108 (240)
Q Consensus 79 ~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~ 108 (240)
+.++.+.+++.|++ .+++.|.+....+++
T Consensus 125 l~~l~~~a~~~Gv~-l~lE~~~~~~~~~~~ 153 (286)
T 3dx5_A 125 IRMICELFAQHNMY-VLLETHPNTLTDTLP 153 (286)
T ss_dssp HHHHHHHHHHTTCE-EEEECCTTSTTSSHH
T ss_pred HHHHHHHHHHhCCE-EEEecCCCcCcCCHH
Confidence 34455667778885 578888765544444
No 103
>1a0c_A Xylose isomerase; ketolisomerase, xylose metabolism, glucose-fructose interconversion, hydride transfer; 2.50A {Thermoanaerobacteriumthermosulfurigenes} SCOP: c.1.15.3 PDB: 1a0d_A 1a0e_A
Probab=35.58 E-value=99 Score=27.23 Aligned_cols=50 Identities=18% Similarity=0.133 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeCCCC------CCh-HHHHHHHHHHHHHHHHHHHhCCC
Q 048797 78 EIGALLEAALASQLGVVGISFHIGSGA------TDF-GAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 78 ~~~~~l~~a~~~~l~~~Glh~H~gS~~------~~~-~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
.+.+.++.|+++|.+ -+++|.|+.- .+. +.|...++.+.++.+. +++.|+
T Consensus 168 ~lk~aId~A~~LGa~--~vv~~~G~~G~~~~~~~~~~~~~~~~~e~L~~~~~~-A~~~Gv 224 (438)
T 1a0c_A 168 QVKKALEITKELGGE--NYVFWGGREGYETLLNTDMEFELDNFARFLHMAVDY-AKEIGF 224 (438)
T ss_dssp HHHHHHHHHHHTTCS--EEEECCTTSEESCGGGCCHHHHHHHHHHHHHHHHHH-HHHTTC
T ss_pred HHHHHHHHHHHcCCC--EEEEccCCCccccCCCCCHHHHHHHHHHHHHHHHHH-HHhcCC
Confidence 456677788888876 5788888621 122 4566666666666666 666654
No 104
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=35.41 E-value=71 Score=25.33 Aligned_cols=51 Identities=10% Similarity=-0.050 Sum_probs=33.7
Q ss_pred HHHHHHHHHhCCCcEEEEEEeeCCC-------CCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 79 IGALLEAALASQLGVVGISFHIGSG-------ATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 79 ~~~~l~~a~~~~l~~~Glh~H~gS~-------~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+.++.+.+++.||++.++|+..+.- ..+++...+.++..++.++. ++.+|.
T Consensus 50 ~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~-A~~lGa 107 (269)
T 3ngf_A 50 ADVIARELKQHNLTQVLFNMPPGDWAAGERGMAAISGREQEFRDNVDIALHY-ALALDC 107 (269)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCSCTTTTCCBCTTCTTCHHHHHHHHHHHHHH-HHHTTC
T ss_pred HHHHHHHHHHcCCcEEEEecCCCccccCCCCcCCCccHHHHHHHHHHHHHHH-HHHcCC
Confidence 4455556678899999988654310 12555566777777777777 777776
No 105
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=35.38 E-value=60 Score=26.12 Aligned_cols=51 Identities=8% Similarity=-0.003 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeCCC---CCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 77 AEIGALLEAALASQLGVVGISFHIGSG---ATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~gS~---~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+.+.+.++.|+++|.+.+.+| .+.. ....+.|.+.++...++.+. +++.|+
T Consensus 108 ~~~~~~i~~A~~lG~~~v~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~~-a~~~Gv 161 (295)
T 3cqj_A 108 EIMRKAIQFAQDVGIRVIQLA--GYDVYYQEANNETRRRFRDGLKESVEM-ASRAQV 161 (295)
T ss_dssp HHHHHHHHHHHHHTCCEEEEC--CCSCSSSCCCHHHHHHHHHHHHHHHHH-HHHHTC
T ss_pred HHHHHHHHHHHHcCCCEEEEC--CCCCCcCcCHHHHHHHHHHHHHHHHHH-HHHhCC
Confidence 346678888899998876554 3321 22356677777777777776 666676
No 106
>2uwf_A Endoxylanase, alkaline active endoxylanase; hydrolase, xylan degradation, xylanase structure, glycosidase, alkaliphilic; 2.10A {Bacillus halodurans} PDB: 2f8q_A 2fgl_A*
Probab=35.10 E-value=44 Score=28.59 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCC--CcEEEEEEeeCCCCCChHHHHHHHH
Q 048797 79 IGALLEAALASQ--LGVVGISFHIGSGATDFGAFDGAIS 115 (240)
Q Consensus 79 ~~~~l~~a~~~~--l~~~Glh~H~gS~~~~~~~~~~~i~ 115 (240)
..++++..++.| ++-+|++.|.+....+++.++++++
T Consensus 204 ~~~~v~~l~~~G~~idgiG~Q~H~~~~~p~~~~~~~~l~ 242 (356)
T 2uwf_A 204 LYNLVKDLLEQGVPIDGVGHQSHIQIGWPSIEDTRASFE 242 (356)
T ss_dssp HHHHHHHHHHTTCCCCEEEECCEEESSCSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcccEEEEEEecCCCCCCHHHHHHHHH
Confidence 445666666666 5788887787655455665555444
No 107
>1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET: XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3 PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A* 3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A*
Probab=34.46 E-value=85 Score=26.84 Aligned_cols=54 Identities=19% Similarity=0.035 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeC--------C-CCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 76 LAEIGALLEAALASQLGVVGISFHIG--------S-GATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 76 ~~~~~~~l~~a~~~~l~~~Glh~H~g--------S-~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
.+++.++.+.+++.||++..+|.... + ...|++...++++.+++.++. ++++|.
T Consensus 68 ~~~~~~l~~~l~~~GL~i~~~~~~~f~~p~~~~g~l~spd~~~r~~~i~~~~~~i~~-A~~LGa 130 (393)
T 1xim_A 68 DGIIAGFKKALDETGLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDL-GAELGA 130 (393)
T ss_dssp HHHHHHHHHHHHHHTCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHH-HHHHTC
T ss_pred HHHHHHHHHHHHHhCCEEEEEecCCcCCcccccCCCCCCCHHHHHHHHHHHHHHHHH-HHHhCC
Confidence 34666677778888999988886431 1 123566677888888888877 776665
No 108
>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*
Probab=34.07 E-value=99 Score=26.42 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhCCCcEEEEEEee--------CC-CCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 78 EIGALLEAALASQLGVVGISFHI--------GS-GATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 78 ~~~~~l~~a~~~~l~~~Glh~H~--------gS-~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
++.++.+.+++.||++..+|... |. ...+.+...++++.+++.++. ++++|.
T Consensus 70 ~~~~l~~~l~~~GL~i~~~~~~~f~~p~~~~g~l~~~d~~~r~~~i~~~~~~i~~-A~~LGa 130 (394)
T 1xla_A 70 ILGDFNQALKDTGLKVPMVTTNLFSHPVFKDGGFTSNDRSIRRFALAKVLHNIDL-AAEMGA 130 (394)
T ss_dssp HHHHHHHHHHHHCCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHH-HHHTTC
T ss_pred HHHHHHHHHHHcCCeEEEEecCccCCccccCCccCCCCHHHHHHHHHHHHHHHHH-HHHhCC
Confidence 45666677788899998887632 11 123566778888888888888 887876
No 109
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=34.06 E-value=43 Score=27.38 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEee-----CCCCCChHHHHHHHHHHHHHHH
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHI-----GSGATDFGAFDGAISAAKAVFD 122 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~-----gS~~~~~~~~~~~i~~~~~~~~ 122 (240)
||+.+-+.++++.+.+.|++.+=-|.+. .|+...++..++.++.++++++
T Consensus 218 GIdl~Nf~~I~~i~l~aGv~~viPHIYsSIIDk~TG~TrpedV~~ll~~~K~l~~ 272 (275)
T 3m6y_A 218 GIDKENFETIVRIALEANVEQVIPHVYSSIIDKETGNTKVEAVRELLAVVKKLVD 272 (275)
T ss_dssp SCCTTTHHHHHHHHHHTTCSCBCCEECGGGBCTTTCCBCHHHHHHHHHHHHHHHT
T ss_pred CccHhHHHHHHHHHHHcCCCeecccccceeccCCCCCCCHHHHHHHHHHHHHHHh
Confidence 8899999999999999998877677663 4555667776666666555543
No 110
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=33.29 E-value=20 Score=23.62 Aligned_cols=13 Identities=23% Similarity=0.935 Sum_probs=11.2
Q ss_pred CCCCCCCEEEEcC
Q 048797 202 PELQVGNWLVFSQ 214 (240)
Q Consensus 202 p~l~~GD~l~~~~ 214 (240)
|+.++|||+.++-
T Consensus 34 ~~~~vGD~VLVH~ 46 (75)
T 2z1c_A 34 PDTKPGDWVIVHT 46 (75)
T ss_dssp TTCCTTCEEEEET
T ss_pred CCCCCCCEEEEec
Confidence 7899999998874
No 111
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=33.00 E-value=85 Score=26.39 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=33.0
Q ss_pred CCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCC
Q 048797 47 RCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGISFHIGS 102 (240)
Q Consensus 47 ~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS 102 (240)
+.+|++|+++ .+.. .=|.+.+++.++++.+.+.|++ .||+|.++
T Consensus 209 ~~pv~vris~-~~~~---------~~g~~~~~~~~~a~~l~~~Gvd--~i~v~~~~ 252 (338)
T 1z41_A 209 DGPLFVRVSA-SDYT---------DKGLDIADHIGFAKWMKEQGVD--LIDCSSGA 252 (338)
T ss_dssp CSCEEEEEEC-CCCS---------TTSCCHHHHHHHHHHHHHTTCC--EEEEECCC
T ss_pred CCcEEEEecC-cccC---------CCCCCHHHHHHHHHHHHHcCCC--EEEEecCc
Confidence 5789999998 4311 1278889999999888888875 67777764
No 112
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=32.70 E-value=68 Score=26.07 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEee--CCC--C--CChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 77 AEIGALLEAALASQLGVVGISFHI--GSG--A--TDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~--gS~--~--~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+.+.+.++.|+++|.+.+..+.|. |.. . ...+.|...++...++.+. +++.|+
T Consensus 107 ~~~~~~i~~A~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~-a~~~gv 165 (309)
T 2hk0_A 107 AFFERTLSNVAKLDIHTIGGALHSYWPIDYSQPVDKAGDYARGVEGINGIADF-ANDLGI 165 (309)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHH-HHHTTC
T ss_pred HHHHHHHHHHHHcCCCEEEeeccccccccCCCcCChHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 356678888999998876533221 321 1 2235566777777777776 666776
No 113
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=32.05 E-value=46 Score=26.17 Aligned_cols=51 Identities=16% Similarity=0.023 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeCCCCCC-----hHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 77 AEIGALLEAALASQLGVVGISFHIGSGATD-----FGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~-----~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+.+.+.++.|+++|.+.+ .+|.|....+ .+.|.+.++...++.+. +++.|+
T Consensus 76 ~~~~~~i~~A~~lGa~~v--~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~-a~~~gv 131 (254)
T 3ayv_A 76 RRLLFGLDRAAELGADRA--VFHSGIPHGRTPEEALERALPLAEALGLVVRR-ARTLGV 131 (254)
T ss_dssp HHHHHHHHHHHHTTCSEE--EEECCCCTTCCHHHHHHTHHHHHHHTHHHHHH-HHHHTC
T ss_pred HHHHHHHHHHHHhCCCEE--EECCCCCcccccccHHHHHHHHHHHHHHHHHH-HhhcCC
Confidence 356677888888998765 5566664433 23366666666666666 665666
No 114
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=31.82 E-value=1.1e+02 Score=24.90 Aligned_cols=54 Identities=24% Similarity=0.199 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEee-CC----CCC----------------Ch-HHHHHHHHHHHHHHHHHHHhCCC
Q 048797 76 LAEIGALLEAALASQLGVVGISFHI-GS----GAT----------------DF-GAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 76 ~~~~~~~l~~a~~~~l~~~Glh~H~-gS----~~~----------------~~-~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
.+++.++.+.+++.||++.++++|. |. ... ++ +...++++.+++.++. ++++|.
T Consensus 50 ~~~~~~~~~~l~~~gl~i~~~~~~~~g~~~~~p~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~i~~-A~~lGa 125 (340)
T 2zds_A 50 PSYVDSRHQLLDKYGLKCWAISNHLVGQAVCDAIIDERHEAILPARIWGDGDAEGVRQRAAAEIKDTARA-AARLGV 125 (340)
T ss_dssp TTHHHHHHHHHHHTTCEEEEEEEHHHHHHHHCSCCSHHHHHHSCHHHHTTCCHHHHHHHHHHHHHHHHHH-HHHHTC
T ss_pred HHHHHHHHHHHHHcCCeEEEeeccccccccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 3456777778889999999999987 21 001 32 3456667777777777 666665
No 115
>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}
Probab=31.40 E-value=86 Score=25.89 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeCC--------CCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 78 EIGALLEAALASQLGVVGISFHIGS--------GATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 78 ~~~~~l~~a~~~~l~~~Glh~H~gS--------~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
++.++.+.+++.||++..+|.+..+ ...|++..+++++..++.++. ++++|.
T Consensus 62 ~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~g~l~~~d~~~r~~~i~~~~~~i~~-A~~LGa 121 (333)
T 3ktc_A 62 TLSEVKDALKDAGLKAIGITPEIYLQKWSRGAFTNPDPAARAAAFELMHESAGI-VRELGA 121 (333)
T ss_dssp CHHHHHHHHHHHTCEEEEEEECTTSGGGTTCSTTCSSHHHHHHHHHHHHHHHHH-HHHHTC
T ss_pred HHHHHHHHHHHcCCeEEEEecCcCcccccCCCCCCcCHHHHHHHHHHHHHHHHH-HHHhCC
Confidence 3444555667789999888875321 124677788888888888877 776665
No 116
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=31.28 E-value=21 Score=24.38 Aligned_cols=13 Identities=23% Similarity=0.672 Sum_probs=11.0
Q ss_pred CCCCCCCEEEEcC
Q 048797 202 PELQVGNWLVFSQ 214 (240)
Q Consensus 202 p~l~~GD~l~~~~ 214 (240)
|++++|||+.++-
T Consensus 40 ~~~~vGD~VLVH~ 52 (90)
T 2ot2_A 40 GQPRVGQWVLVHV 52 (90)
T ss_dssp SCBCTTCEEEEET
T ss_pred CCCCCCCEEEEec
Confidence 6899999998874
No 117
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=31.01 E-value=1.1e+02 Score=26.75 Aligned_cols=47 Identities=17% Similarity=0.060 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHH
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKA 119 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~ 119 (240)
+-+.+++.++++.+++.|+.-+++++-.|--..+.+.|.+.++.+.+
T Consensus 185 ~~~~~~~~~ai~~~r~~G~~~v~~dlI~GlPget~e~~~~tl~~~~~ 231 (457)
T 1olt_A 185 EQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQTPESFAFTLKRVAE 231 (457)
T ss_dssp CCCHHHHHHHHHHHHHTTCCSCEEEEEESCTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence 45688999999999999886567888888655678888777776544
No 118
>1n82_A Xylanase, intra-cellular xylanase; hydrolase; 1.45A {Geobacillus stearothermophilus} SCOP: c.1.8.3 PDB: 3mua_A* 2q8x_A* 3msd_A* 3msg_A* 3mui_A* 3ms8_A
Probab=30.89 E-value=57 Score=27.48 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=22.5
Q ss_pred HHHHHHHHHhCC--CcEEEEEEeeCCCCCChHHHHHHHH
Q 048797 79 IGALLEAALASQ--LGVVGISFHIGSGATDFGAFDGAIS 115 (240)
Q Consensus 79 ~~~~l~~a~~~~--l~~~Glh~H~gS~~~~~~~~~~~i~ 115 (240)
..++++..++.| ++-+|++.|.+.+..+++.++++++
T Consensus 190 ~~~~v~~l~~~g~~idgiG~Q~H~~~~~~~~~~~~~~l~ 228 (331)
T 1n82_A 190 IFALVKSLRDKGIPIHGIGMQAHWSLTRPSLDEIRAAIE 228 (331)
T ss_dssp HHHHHHHHHHTTCCCCEEEECCEEESSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCccceEEeceecCCCCCCHHHHHHHHH
Confidence 345555555666 5777887788655455665555544
No 119
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}
Probab=30.88 E-value=77 Score=26.13 Aligned_cols=52 Identities=8% Similarity=-0.018 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEE-EeeCCCCC-----------------ChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 77 AEIGALLEAALASQLGVVGIS-FHIGSGAT-----------------DFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh-~H~gS~~~-----------------~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+.+.+.++.|+++|.+.+ +| +|.+-+.. ..+.|...++...++.+. +++.|+
T Consensus 109 ~~~~~~i~~A~~lG~~~v-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-a~~~Gv 178 (335)
T 2qw5_A 109 EYLKSRVDITAALGGEIM-MGPIVIPYGVFPTTDFNEPIWSDELQEHLKVRYANAQPILDKLGEY-AEIKKV 178 (335)
T ss_dssp HHHHHHHHHHHHTTCSEE-EECCSSCTTCCCBCTTCCBCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTC
T ss_pred HHHHHHHHHHHHcCCCEE-eccccCccccccCCcccccccccchhhhHHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 456678888999999877 43 22111111 234566666666677666 655566
No 120
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=30.52 E-value=42 Score=17.94 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCcE
Q 048797 72 CGANLAEIGALLEAALASQLGV 93 (240)
Q Consensus 72 FG~~~~~~~~~l~~a~~~~l~~ 93 (240)
-|=++||+.++-+.+++.++++
T Consensus 10 vggtpeelkklkeeakkanirv 31 (36)
T 2ki0_A 10 VGGTPEELKKLKEEAKKANIRV 31 (36)
T ss_dssp BCCCHHHHHHHHHHHHHHCCCC
T ss_pred ecCCHHHHHHHHHHHHhccEEE
Confidence 3667999999999999988764
No 121
>3emz_A Xylanase, endo-1,4-beta-xylanase; (alpha/beta)8 barrel, GH10 enzyme complex, hydrolase; HET: HXH; 2.08A {Bacillus SP} SCOP: c.1.8.3 PDB: 3emq_A* 3emc_A*
Probab=30.35 E-value=48 Score=28.15 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=23.0
Q ss_pred HHHHHHHHHhCC--CcEEEEEEeeCCCCCChHHHHHHHH
Q 048797 79 IGALLEAALASQ--LGVVGISFHIGSGATDFGAFDGAIS 115 (240)
Q Consensus 79 ~~~~l~~a~~~~--l~~~Glh~H~gS~~~~~~~~~~~i~ 115 (240)
..++++..++.| ++-+|++.|.+.+..+++.++++++
T Consensus 189 ~~~~v~~l~~~GvpidgiG~Q~H~~~~~p~~~~~~~~l~ 227 (331)
T 3emz_A 189 IYNLVRSLLDQGAPVHGIGMQGHWNIHGPSMDEIRQAIE 227 (331)
T ss_dssp HHHHHHHHHHHTCCCCEEEECCEEETTBSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCccceEEECceecCCCCCHHHHHHHHH
Confidence 344555555555 6778999998766555555555444
No 122
>1ta3_B Endo-1,4-beta-xylanase; beta alpha barrel (XIP-I), beta alpha barrel (xylanase), HYD inhibitor-hydrolase complex; HET: NAG; 1.70A {Emericella nidulans} SCOP: c.1.8.3
Probab=30.32 E-value=54 Score=27.32 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCC--CcEEEEEEeeCCCCCChHHHHHHHH
Q 048797 78 EIGALLEAALASQ--LGVVGISFHIGSGATDFGAFDGAIS 115 (240)
Q Consensus 78 ~~~~~l~~a~~~~--l~~~Glh~H~gS~~~~~~~~~~~i~ 115 (240)
...++++..++.| ++-+|++.|.+......+.++++++
T Consensus 185 ~~~~~v~~l~~~G~~iDgiG~Q~H~~~~~~~~~~~~~~l~ 224 (303)
T 1ta3_B 185 AMASYVKKWLAEGVPIDGIGSQAHYSSSHWSSTEAAGALS 224 (303)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECCEECTTCCCGGGHHHHHH
T ss_pred HHHHHHHHHHHCCCCcceEEEeeecCCCCCCHHHHHHHHH
Confidence 3455666556666 5778887888765444354544444
No 123
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=29.68 E-value=79 Score=25.64 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=51.7
Q ss_pred HHHHHHHHHCCCCcc--CHHHHc-cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEE
Q 048797 21 ENGLAEALGSNFDYA--SQAEIK-GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGIS 97 (240)
Q Consensus 21 ~~~l~~A~~~gv~~~--s~~EL~-~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~l~~~Glh 97 (240)
++.++.|++.|+..+ +..-+. .. .++..++++++. ...-. .+.....|+ .+ .+.+.+.|.+.+.++
T Consensus 44 ~~~~~~a~~~~~~av~v~~~~v~~~~-~~~~~liv~~~~-~~~~~-g~~~~~~~~----~~----ve~Ai~~Ga~~v~~~ 112 (263)
T 1w8s_A 44 EYILRLARDAGFDGVVFQRGIAEKYY-DGSVPLILKLNG-KTTLY-NGEPVSVAN----CS----VEEAVSLGASAVGYT 112 (263)
T ss_dssp HHHHHHHHHHTCSEEEECHHHHHHHC-CSSSCEEEECEE-CCTTC-CSSCCCEES----SC----HHHHHHTTCSEEEEE
T ss_pred HHHHHHHHhhCCCEEEECHHHHHHhh-cCCCcEEEEEeC-CCCcC-CCCccchHH----HH----HHHHHHCCCCEEEEE
Confidence 345566778888765 766666 23 556788899987 32110 000111121 12 334446788888888
Q ss_pred EeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 98 FHIGSGATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 98 ~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
..+|+. +. .+.++.+.++.+. ++++|+
T Consensus 113 ~nig~~--~~---~~~~~~~~~v~~~-~~~~~~ 139 (263)
T 1w8s_A 113 IYPGSG--FE---WKMFEELARIKRD-AVKFDL 139 (263)
T ss_dssp ECTTST--TH---HHHHHHHHHHHHH-HHHHTC
T ss_pred EecCCc--CH---HHHHHHHHHHHHH-HHHcCC
Confidence 878863 33 3444555555555 555676
No 124
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=29.58 E-value=2.2e+02 Score=22.90 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEee--CCCC--CChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 77 AEIGALLEAALASQLGVVGISFHI--GSGA--TDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~--gS~~--~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+++.++.+.+++.||++.+ |.-. +-+. .+++...+.++.+.+.++. ++++|.
T Consensus 66 ~~~~~l~~~l~~~gl~i~~-~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~-A~~lG~ 121 (309)
T 2hk0_A 66 AELATIRKSAKDNGIILTA-GIGPSKTKNLSSEDAAVRAAGKAFFERTLSN-VAKLDI 121 (309)
T ss_dssp HHHHHHHHHHHHTTCEEEE-ECCCCSSSCSSCSCHHHHHHHHHHHHHHHHH-HHHTTC
T ss_pred hhHHHHHHHHHHcCCeEEE-ecCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 5667777788889999877 4311 1112 3566677778888888877 777776
No 125
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A
Probab=29.23 E-value=84 Score=24.89 Aligned_cols=46 Identities=13% Similarity=0.018 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeCC--CCCChHHHHHHHHHHHHHH
Q 048797 76 LAEIGALLEAALASQLGVVGISFHIGS--GATDFGAFDGAISAAKAVF 121 (240)
Q Consensus 76 ~~~~~~~l~~a~~~~l~~~Glh~H~gS--~~~~~~~~~~~i~~~~~~~ 121 (240)
+++..+.++.|.+.|++-+++.=|.-. ...+.+.+.+.++.+++.+
T Consensus 23 ~e~~~e~i~~A~~~Gi~~i~~TdH~~~~~~~~~~~~~~~~~~~l~~~~ 70 (247)
T 2wje_A 23 REESKALLAESYRQGVRTIVSTSHRRKGMFETPEEKIAENFLQVREIA 70 (247)
T ss_dssp HHHHHHHHHHHHHTTEEEEECCCEEBTTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 578889999999999999999888642 2345556666666555543
No 126
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}
Probab=29.20 E-value=49 Score=29.07 Aligned_cols=48 Identities=13% Similarity=0.204 Sum_probs=34.8
Q ss_pred CCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHh-CCCcEEEEEEeeCC
Q 048797 45 HPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALA-SQLGVVGISFHIGS 102 (240)
Q Consensus 45 ~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~-~~l~~~Glh~H~gS 102 (240)
.++..|++|+++ .+.. .. .-|++.++..++++.+.+ .|++. ||+|.++
T Consensus 240 ~~~f~v~vRis~-~~~~-----~~--~~G~~~ed~~~la~~L~~~~Gvd~--I~vs~g~ 288 (419)
T 3l5a_A 240 PDNFILGFRATP-EETR-----GS--DLGYTIDEFNQLIDWVMDVSNIQY--LAIASWG 288 (419)
T ss_dssp CTTCEEEEEECS-CEEE-----TT--EEEECHHHHHHHHHHHHHHSCCCC--EEECCTT
T ss_pred CCCeeEEEeccc-cccc-----CC--CCCCCHHHHHHHHHHHHhhcCCcE--EEEeeCC
Confidence 556789999998 4210 01 237889999999998888 88764 7888765
No 127
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=29.13 E-value=98 Score=24.40 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=7.8
Q ss_pred HHHHHHHHHCCCC
Q 048797 21 ENGLAEALGSNFD 33 (240)
Q Consensus 21 ~~~l~~A~~~gv~ 33 (240)
.+.++.|.+.|+.
T Consensus 17 ~~~~~~~~~~G~~ 29 (270)
T 3aam_A 17 AGAVEEATALGLT 29 (270)
T ss_dssp HHHHHHHHHHTCS
T ss_pred HHHHHHHHHcCCC
Confidence 4456666666654
No 128
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=29.05 E-value=1.2e+02 Score=23.98 Aligned_cols=53 Identities=19% Similarity=0.040 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEEE-eeCCC--CCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 77 AEIGALLEAALASQLGVVGISF-HIGSG--ATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~-H~gS~--~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+++.++.+.+++.|+++.+.+. ..+-+ ..+++...++++...+.++. ++++|.
T Consensus 47 ~~~~~~~~~l~~~gl~~~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~-a~~lG~ 102 (290)
T 2qul_A 47 AKKRELKAVADDLGLTVMCCIGLKSEYDFASPDKSVRDAGTEYVKRLLDD-CHLLGA 102 (290)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEEECGGGCTTCSCHHHHHHHHHHHHHHHHH-HHHHTC
T ss_pred hhHHHHHHHHHHcCCceEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 5667777778888999887442 11111 13566677777777777777 666665
No 129
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=28.78 E-value=84 Score=25.70 Aligned_cols=51 Identities=20% Similarity=0.122 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeCCCC---------C----ChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 77 AEIGALLEAALASQLGVVGISFHIGSGA---------T----DFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~gS~~---------~----~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+.+.+.++.|+++|.+.+.+ |.|+.. . ..+.|.+.++...++.+. +++.|+
T Consensus 111 ~~~~~~i~~A~~lGa~~v~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-a~~~Gv 174 (340)
T 2zds_A 111 AEIKDTARAAARLGVDTVIG--FTGSAIWHLVAMFPPAPESMIERGYQDFADRWNPILDV-FDAEGV 174 (340)
T ss_dssp HHHHHHHHHHHHHTCSEEEE--CCCCSSGGGTTCCSCCCHHHHHHHHHHHHHHHHHHHHH-HHHHTC
T ss_pred HHHHHHHHHHHHcCCCEEEE--ecCCcCcccccccCCCcccchHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 35666788888999876555 566532 1 124466666666666666 666676
No 130
>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ...
Probab=28.63 E-value=1.1e+02 Score=26.07 Aligned_cols=53 Identities=19% Similarity=0.132 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEee--------CC-CCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 77 AEIGALLEAALASQLGVVGISFHI--------GS-GATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~--------gS-~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+++.++.+.+++.||++..+|... |. ...+.+...++++...+.++. ++++|.
T Consensus 69 ~~~~~l~~~l~~~GL~i~~~~~~~~~~p~~~~g~l~~~d~~~r~~~i~~~~~~i~~-A~~LGa 130 (386)
T 1muw_A 69 SHIKRFRQALDATGMTVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTIRNIDL-AVELGA 130 (386)
T ss_dssp HHHHHHHHHHHHHTCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHH-HHHHTC
T ss_pred HHHHHHHHHHHHhCCeEEEEecccccccccccCCCCCCCHHHHHHHHHHHHHHHHH-HHHhCC
Confidence 356666677888899998888632 11 113556677888888888877 776665
No 131
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=28.57 E-value=52 Score=25.96 Aligned_cols=49 Identities=16% Similarity=0.022 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHH-HHHHHHHHHHHHHhCCC
Q 048797 77 AEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGA-ISAAKAVFDAASARHGL 130 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~-i~~~~~~~~~l~~~~g~ 130 (240)
+.+.+.++.|+++|.+.+.+ |.|... .+.|.+. ++...++.+. +++.|+
T Consensus 85 ~~~~~~i~~a~~lG~~~v~~--~~g~~~--~~~~~~~~~~~l~~l~~~-a~~~gv 134 (272)
T 2q02_A 85 KKTEGLLRDAQGVGARALVL--CPLNDG--TIVPPEVTVEAIKRLSDL-FARYDI 134 (272)
T ss_dssp HHHHHHHHHHHHHTCSEEEE--CCCCSS--BCCCHHHHHHHHHHHHHH-HHTTTC
T ss_pred HHHHHHHHHHHHhCCCEEEE--ccCCCc--hhHHHHHHHHHHHHHHHH-HHHcCC
Confidence 45677888899999876554 555431 2445555 5555566665 666676
No 132
>1us2_A Xylanase10C, endo-beta-1,4-xylanase; hydrolase, carbohydrate binding module, xylan degradation; HET: XYP; 1.85A {Cellvibrio japonicus} SCOP: b.18.1.11 c.1.8.3 PDB: 1us3_A
Probab=28.39 E-value=63 Score=29.38 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhCC--CcEEEEEEeeCCCCCChHHHHHHHH
Q 048797 78 EIGALLEAALASQ--LGVVGISFHIGSGATDFGAFDGAIS 115 (240)
Q Consensus 78 ~~~~~l~~a~~~~--l~~~Glh~H~gS~~~~~~~~~~~i~ 115 (240)
...++++..++.| ++-+|++.|.+....+++.++++++
T Consensus 361 ~~~~lVk~l~~~GvpIDGIG~Q~H~~~~~p~~~~i~~~L~ 400 (530)
T 1us2_A 361 KMVDMVKDFQARSIPIDGVGFQMHVCMNYPSIANISAAMK 400 (530)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECCEEESSCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCceeEEEEeeecCCCCCCHHHHHHHHH
Confidence 3445566666666 5788998888765556665555544
No 133
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=28.02 E-value=1.1e+02 Score=24.83 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCCcEEEEEEee-CCCCCCh----------HHHHHHHHHHHHHHHHHHHhCCC
Q 048797 80 GALLEAALASQLGVVGISFHI-GSGATDF----------GAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 80 ~~~l~~a~~~~l~~~Glh~H~-gS~~~~~----------~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
.++.+.+++.||++.++|+-. .....++ +...+.++...+.++. ++.+|.
T Consensus 62 ~~~~~~l~~~GL~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~-A~~lG~ 122 (303)
T 3l23_A 62 MDFKKMAEDAGLKIISSHVNPVDTSISDPFKAMIFKYSKEVTPKIMEYWKATAAD-HAKLGC 122 (303)
T ss_dssp HHHHHHHHHTTCEEEEEECCCBCTTCSSTTTTBCCSCCTTTHHHHHHHHHHHHHH-HHHTTC
T ss_pred HHHHHHHHHcCCeEEEEecccccccccCcccccccccchhhHHHHHHHHHHHHHH-HHHcCC
Confidence 344455567899998887543 1111222 1234555556666666 666776
No 134
>3m0m_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer, metal-binding protein, TIM isomerase; HET: AOS; 1.45A {Pseudomonas stutzeri} PDB: 3m0l_A* 3m0h_A* 3m0v_A* 3m0x_A* 3m0y_A* 3itx_A 2hcv_A* 2i57_A* 2i56_A 3ity_A 3iud_A 3iuh_A 3iui_A 3itv_A* 3itt_A* 3itl_A* 3ito_A* 4gji_A* 4gjj_A*
Probab=27.95 E-value=83 Score=27.82 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEEE----ee---------CC-CCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 77 AEIGALLEAALASQLGVVGISF----HI---------GS-GATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 77 ~~~~~~l~~a~~~~l~~~Glh~----H~---------gS-~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+++.++.+.+++.|+.+.+++. |. |+ ...|++.++.+++..++.++. +.++|-
T Consensus 107 ~d~~~lk~~l~e~GL~l~~i~~~~f~hp~~~~~~Y~~GnLtspD~~vR~~Ai~~lk~~Id~-A~~LGa 173 (438)
T 3m0m_A 107 ADPKELKARGDALGLGFDAMNSNTFSDAPGQAHSYKYGSLSHTNAATRAQAVEHNLECIEI-GKAIGS 173 (438)
T ss_dssp CCHHHHHHHHHHHTCEEEEEECCCSSCCTTCSSCCTTCSTTCSSHHHHHHHHHHHHHHHHH-HHHHTC
T ss_pred HHHHHHHHHHHHcCCceEEeecccccCchhcccccccCCCCCcCHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 4566677777888999887765 32 21 124678889999999888888 776665
No 135
>3niy_A Endo-1,4-beta-xylanase; TIM-barrel, hydrolase; 1.58A {Thermotoga petrophila rku-1} SCOP: c.1.8.3 PDB: 3nj3_A* 1vbr_A* 1vbu_A
Probab=27.95 E-value=88 Score=26.58 Aligned_cols=38 Identities=11% Similarity=0.281 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhCC--CcEEEEEEeeCCCCCChHHHHHHHH
Q 048797 78 EIGALLEAALASQ--LGVVGISFHIGSGATDFGAFDGAIS 115 (240)
Q Consensus 78 ~~~~~l~~a~~~~--l~~~Glh~H~gS~~~~~~~~~~~i~ 115 (240)
...++++..++.| ++-+|++.|.+.+....+.+.++++
T Consensus 204 ~~~~lv~~l~~~GvpIdgIG~Q~H~~~~~~~~~~~~~~l~ 243 (341)
T 3niy_A 204 FVYNMIKELKEKGVPVDGIGFQMHIDYRGLNYDSFRRNLE 243 (341)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECCEEETTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCcceEeeeeecCCCCCCHHHHHHHHH
Confidence 4455666666666 5778999999776444444444433
No 136
>1v0l_A Endo-1,4-beta-xylanase A; glycoside hydrolase family 10, xylan degradation, isofagomine, hydrolase; 0.98A {Streptomyces lividans} SCOP: c.1.8.3 PDB: 1e0x_A 1e0w_A* 1od8_A 1v0k_A 1v0m_A 1v0n_A 1e0v_A* 1xas_A 2g3i_A 2g3j_A* 2g4f_A 1v6y_A
Probab=27.77 E-value=41 Score=28.25 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=20.8
Q ss_pred HHHHHHHHhCC--CcEEEEEEeeCCCCCChHHHHHHHH
Q 048797 80 GALLEAALASQ--LGVVGISFHIGSGATDFGAFDGAIS 115 (240)
Q Consensus 80 ~~~l~~a~~~~--l~~~Glh~H~gS~~~~~~~~~~~i~ 115 (240)
.++++..++.| ++-+|++.|.+....+++.++++++
T Consensus 186 ~~~v~~l~~~G~~iDgIG~Q~H~~~~~~~~~~~~~~l~ 223 (313)
T 1v0l_A 186 YNMVRDFKQRGVPIDCVGFQSHFNSGSPYNSNFRTTLQ 223 (313)
T ss_dssp HHHHHHHHHHTCCCCEEEECCEEBTTBCCCTTHHHHHH
T ss_pred HHHHHHHHHCCCCcceEEEeEEccCCCCCHHHHHHHHH
Confidence 44555445555 5778887787655444555554444
No 137
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=27.69 E-value=81 Score=29.16 Aligned_cols=47 Identities=23% Similarity=0.219 Sum_probs=34.0
Q ss_pred ccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeC
Q 048797 43 KWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGISFHIG 101 (240)
Q Consensus 43 ~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~g 101 (240)
..+++..|.+|+++ .+. . .-|.+.+++.++++.+.+.|++. ||+|.|
T Consensus 204 ~vG~~~~v~vrls~-~~~-------~--~~g~~~~~~~~~a~~l~~~g~d~--i~v~~~ 250 (671)
T 1ps9_A 204 RVGNDFIIIYRLSM-LDL-------V--EDGGTFAETVELAQAIEAAGATI--INTGIG 250 (671)
T ss_dssp HHCSSSEEEEEEEE-ECC-------S--TTCCCHHHHHHHHHHHHHHTCSE--EEEEEC
T ss_pred HcCCCceEEEEECc-ccc-------C--CCCCCHHHHHHHHHHHHhcCCCE--EEcCCC
Confidence 44667789999999 421 1 23788999989888888889876 455544
No 138
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=27.33 E-value=33 Score=24.41 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=13.6
Q ss_pred CCCCCCCEEEEcCCCccc
Q 048797 202 PELQVGNWLVFSQIGACT 219 (240)
Q Consensus 202 p~l~~GD~l~~~~~GAY~ 219 (240)
+++++||+|.|.-.+ |.
T Consensus 6 ~ep~pGDlI~~~r~~-Y~ 22 (125)
T 2lkt_A 6 QEPKPGDLIEIFRLG-YE 22 (125)
T ss_dssp CCCCTTCEEEEECSS-SC
T ss_pred CCCCCCCEEEEeCCC-cc
Confidence 589999999987755 54
No 139
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=27.18 E-value=1.3e+02 Score=24.94 Aligned_cols=45 Identities=2% Similarity=0.045 Sum_probs=26.9
Q ss_pred HHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHH---hCCCCCCCCccc
Q 048797 83 LEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASA---RHGLTDQMRAKH 138 (240)
Q Consensus 83 l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~---~~g~~~~~~~ld 138 (240)
+..+++.|.++.++||+ +++ +..+.++++.+.+.. ..++ ++.++|
T Consensus 195 a~ll~~~G~~v~~v~~~-~~~--------~~~~~a~~~a~~l~~~~~~~~i--~~~vv~ 242 (307)
T 1vbk_A 195 IFLMMKRGVEVIPVYIG-KDD--------KNLEKVRSLWNLLKRYSYGSKG--FLVVAE 242 (307)
T ss_dssp HHHHHHBTCEEEEEEES-CSS--------HHHHHHHHHHHHHHTTCTTSCC--CCEEES
T ss_pred HHHHHhCCCeEEEEEEE-ECH--------HHHHHHHHHHHHHhhhccCCCC--cEEEeC
Confidence 34566789999999999 443 224445555555321 1256 666665
No 140
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3
Probab=26.23 E-value=47 Score=26.69 Aligned_cols=47 Identities=4% Similarity=-0.059 Sum_probs=34.0
Q ss_pred CCCcEE-EcCCCCCHHHHHHHHHCCCCcc------CHHHHc--cccCCCCcEEEEEee
Q 048797 8 SGKSVS-LTVALRNENGLAEALGSNFDYA------SQAEIK--GKWHPRCDLLIRIKA 56 (240)
Q Consensus 8 ~~~~Ii-~~gp~K~~~~l~~A~~~gv~~~------s~~EL~--~~~~~~~~v~lRi~~ 56 (240)
+++-+| |+.|.-..+-+++|+++|+.++ +.++++ +....+ +.+=+.|
T Consensus 53 ~~DVvIDFT~P~a~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~--~~vv~ap 108 (228)
T 1vm6_A 53 SPDVVIDFSSPEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELSKE--VPVVQAY 108 (228)
T ss_dssp CCSEEEECSCGGGHHHHHHHHHHHTCEEEECCCSCCHHHHHHHHHHTTT--SEEEECS
T ss_pred CCCEEEECCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHHhh--CCEEEec
Confidence 456777 9999999999999999999866 777766 333333 4444444
No 141
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=26.00 E-value=1.2e+02 Score=24.17 Aligned_cols=49 Identities=12% Similarity=-0.083 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 78 EIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 78 ~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
++.++.+.+++.||++..+|+.. ..+++...+.++..++.++. ++++|.
T Consensus 56 ~~~~~~~~l~~~gl~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~-a~~lG~ 104 (301)
T 3cny_A 56 GPEKLNYELKLRNLEIAGQWFSS---YIIRDGIEKASEAFEKHCQY-LKAINA 104 (301)
T ss_dssp CHHHHHHHHHHTTCEECEEEEEE---CHHHHHHHHHHHHHHHHHHH-HHHTTC
T ss_pred CHHHHHHHHHHCCCeEEEEeccC---CCChhhHHHHHHHHHHHHHH-HHHcCC
Confidence 34445556678899988874322 23566677777888888877 777776
No 142
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=25.88 E-value=2.4e+02 Score=23.10 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=8.0
Q ss_pred CHHHHHHHHHCCCCc
Q 048797 20 NENGLAEALGSNFDY 34 (240)
Q Consensus 20 ~~~~l~~A~~~gv~~ 34 (240)
+.++++.|++.|+..
T Consensus 85 ~~~~i~~a~~aG~~~ 99 (302)
T 2ftp_A 85 NLKGFEAALESGVKE 99 (302)
T ss_dssp SHHHHHHHHHTTCCE
T ss_pred CHHHHHHHHhCCcCE
Confidence 455555555555543
No 143
>1xyz_A 1,4-beta-D-xylan-xylanohydrolase; glycosyl hydrolase, xylanase, family F/10 of glycosyl hydrolases, glycosyltransferase; 1.40A {Clostridium thermocellum} SCOP: c.1.8.3
Probab=25.77 E-value=76 Score=26.91 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhCC--CcEEEEEEeeCCC
Q 048797 78 EIGALLEAALASQ--LGVVGISFHIGSG 103 (240)
Q Consensus 78 ~~~~~l~~a~~~~--l~~~Glh~H~gS~ 103 (240)
...++++..++.| ++-+|++.|.+.+
T Consensus 210 ~~~~~v~~l~~~G~~idgiG~Q~H~~~~ 237 (347)
T 1xyz_A 210 AVFNMIKSMKERGVPIDGVGFQCHFING 237 (347)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECCEEESS
T ss_pred HHHHHHHHHHHCCCCcceEEEeeecCCC
Confidence 4555666666666 5778887787654
No 144
>2dep_A Xylanase B, thermostable celloxylanase; glycosidase, xylan degradation, family 10, structural genomics, NPPSFA; 1.80A {Clostridium stercorarium}
Probab=24.98 E-value=84 Score=26.76 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=22.0
Q ss_pred HHHHHHHHHhCC--CcEEEEEEeeCCCCCChHHHHHHHH
Q 048797 79 IGALLEAALASQ--LGVVGISFHIGSGATDFGAFDGAIS 115 (240)
Q Consensus 79 ~~~~l~~a~~~~--l~~~Glh~H~gS~~~~~~~~~~~i~ 115 (240)
..++++..++.| ++.+|++.|.+....+++.++++++
T Consensus 203 ~~~~v~~l~~~G~~idgiG~Q~H~~~~~p~~~~~~~~l~ 241 (356)
T 2dep_A 203 LYELVKNLLEKGVPIDGVGHQTHIDIYNPPVERIIESIK 241 (356)
T ss_dssp HHHHHHHHHHTTCCCCEEEECCEEESSCSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCccEEEeeeeecCCCCCHHHHHHHHH
Confidence 445555555655 5678887787654445555555444
No 145
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=24.29 E-value=1.6e+02 Score=24.53 Aligned_cols=42 Identities=12% Similarity=-0.011 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHH
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISA 116 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~ 116 (240)
+.+.+++.+.++.+++.|+. ++..+-+|- ..+.+.+.+.++.
T Consensus 184 ~~~~~~~l~~i~~a~~~Gi~-v~~~~i~Gl-get~e~~~~~l~~ 225 (350)
T 3t7v_A 184 GQSFDGRVNARRFAKQQGYC-VEDGILTGV-GNDIESTILSLRG 225 (350)
T ss_dssp TCCHHHHHHHHHHHHHHTCE-EEEEEEESS-SCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCe-EccceEeec-CCCHHHHHHHHHH
Confidence 56789999999999999997 778888888 4566666554443
No 146
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=23.49 E-value=2e+02 Score=24.82 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHH--------HHHHHHHHHHHHHHHHhCCC
Q 048797 76 LAEIGALLEAALASQLGVVGISFHIGSGATDFGAF--------DGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 76 ~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~--------~~~i~~~~~~~~~l~~~~g~ 130 (240)
.+.+.++++.|++.++-+ -+-...|| ++.+.. ...++.+.+.++. .+++|+
T Consensus 119 ~~~~~~vv~~ak~~~~pi-RIGvN~GS--L~~~ll~~yg~~~~eamVeSAl~~~~~-~e~~gf 177 (366)
T 3noy_A 119 EEIVREIVEEAKRRGVAV-RIGVNSGS--LEKDLLEKYGYPSAEALAESALRWSEK-FEKWGF 177 (366)
T ss_dssp HHHHHHHHHHHHHHTCEE-EEEEEGGG--CCHHHHHHHSSCCHHHHHHHHHHHHHH-HHHTTC
T ss_pred hhHHHHHHHHHHHcCCCE-EEecCCcC--CCHHHHHhcCCCCHHHHHHHHHHHHHH-HHhCCC
Confidence 567889999999999743 23334565 443321 2235556666655 666777
No 147
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=23.03 E-value=35 Score=27.60 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEee-----CCCCCChHHHHHHHHHH
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHI-----GSGATDFGAFDGAISAA 117 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~-----gS~~~~~~~~~~~i~~~ 117 (240)
||+.+.+.++++.+.+.|++.+=-|.+. .|+...++..++.++.+
T Consensus 195 GIdl~N~~~I~~i~l~aGv~~viPHIYssIIDk~TG~TrpedV~~ll~~~ 244 (249)
T 3m0z_A 195 GIDLENYSEILKIALDAGVSKIIPHIYSSIIDKASGNTRPADVRQLLEMT 244 (249)
T ss_dssp SCCTTTHHHHHHHHHHHTCSCBCCBCCGGGBCTTTCCBCHHHHHHHHHHH
T ss_pred CccHhhHHHHHHHHHHcCCCeecccccceeccCCCCCCCHHHHHHHHHHH
Confidence 6777777777777777776655455442 23344455544444433
No 148
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=22.85 E-value=3.3e+02 Score=22.64 Aligned_cols=55 Identities=24% Similarity=0.224 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEe-------eCCCCC------ChHHHHHH-HHHHHHHHHHHHHhCCC
Q 048797 74 ANLAEIGALLEAALASQLGVVGISFH-------IGSGAT------DFGAFDGA-ISAAKAVFDAASARHGL 130 (240)
Q Consensus 74 ~~~~~~~~~l~~a~~~~l~~~Glh~H-------~gS~~~------~~~~~~~~-i~~~~~~~~~l~~~~g~ 130 (240)
.+.+.+.++++.|++.||++. |-|| .|+|.. +.+.+.+. .+..+++++.+ ++.|.
T Consensus 57 ~~~~~~~~~~~~A~~~GlkV~-ld~Hysd~WadPg~Q~~p~~W~~~~~~~~~~~~~yt~~vl~~l-~~~g~ 125 (332)
T 1hjs_A 57 YNLDYNIAIAKRAKAAGLGVY-IDFHYSDTWADPAHQTMPAGWPSDIDNLSWKLYNYTLDAANKL-QNAGI 125 (332)
T ss_dssp TSHHHHHHHHHHHHHTTCEEE-EEECCSSSCCBTTBCBCCTTCCCSHHHHHHHHHHHHHHHHHHH-HHTTC
T ss_pred CCHHHHHHHHHHHHHCCCEEE-EEeccCCCcCCccccCCccccccchHHHHHHHHHHHHHHHHHH-HHcCC
Confidence 467889999999999999853 4455 344432 22333333 44455666663 33455
No 149
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=22.81 E-value=1.8e+02 Score=24.38 Aligned_cols=51 Identities=25% Similarity=0.298 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCC------hHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 75 NLAEIGALLEAALASQLGVVGISFHIGSGATD------FGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 75 ~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~------~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
+.+++.++.+.+.+.||++.+++ +.... .+.+.+.++...+.++. ++++|.
T Consensus 53 ~~~~~~~~~~~l~~~GL~i~~~~----~~~~~~~~~~~~~~r~~~i~~~~~~i~~-a~~lG~ 109 (367)
T 1tz9_A 53 TVAEIQALKQSVEQEGLALLGIE----SVAIHDAIKAGTDQRDHYIDNYRQTLRN-LGKCGI 109 (367)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEC----SCCCCHHHHHTCSTHHHHHHHHHHHHHH-HHHTTC
T ss_pred CHHHHHHHHHHHHHCCCeEEEEe----cCCCcHHHhcCCcCHHHHHHHHHHHHHH-HHHcCC
Confidence 34577777788888999988743 22222 23356677777777777 676777
No 150
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=22.80 E-value=1.6e+02 Score=24.76 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=33.0
Q ss_pred CCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCC
Q 048797 47 RCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGISFHIGS 102 (240)
Q Consensus 47 ~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS 102 (240)
+..|++|+++ .+.. .=|.+.++..++++.+.+.|++ .||+|.|.
T Consensus 209 ~~pv~vRls~-~~~~---------~~g~~~~~~~~la~~L~~~Gvd--~i~vs~g~ 252 (340)
T 3gr7_A 209 DGPLFVRISA-SDYH---------PDGLTAKDYVPYAKRMKEQGVD--LVDVSSGA 252 (340)
T ss_dssp CSCEEEEEES-CCCS---------TTSCCGGGHHHHHHHHHHTTCC--EEEEECCC
T ss_pred CCceEEEecc-cccc---------CCCCCHHHHHHHHHHHHHcCCC--EEEEecCC
Confidence 5689999998 4211 2277889999999988888976 57777654
No 151
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=22.37 E-value=1.1e+02 Score=26.26 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHH---HHHHHHHHHHHHHHHHhCCCCCCCCccc
Q 048797 73 GANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAF---DGAISAAKAVFDAASARHGLTDQMRAKH 138 (240)
Q Consensus 73 G~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~---~~~i~~~~~~~~~l~~~~g~~~~~~~ld 138 (240)
|+|..-+..++ ++.+.++.|+|++.+.+. +...+ .+.++.++++ ++.+|+ ++.++|
T Consensus 27 GvDSsv~a~lL---~~~G~~V~~v~~~~~~~~-~~~~~~~s~~d~~~a~~v----a~~LGI--p~~vvd 85 (380)
T 2der_A 27 GVDSSVSAWLL---QQQGYQVEGLFMKNWEED-DGEEYCTAAADLADAQAV----CDKLGI--ELHTVN 85 (380)
T ss_dssp CSTTHHHHHHH---HTTCCEEEEEEEECCCCC-SHHHHHHHHHHHHHHHHH----HHHHTC--CEEEEE
T ss_pred hHHHHHHHHHH---HHcCCeEEEEEEEcCccc-cccCCCCCHHHHHHHHHH----HHHcCC--cEEEEe
Confidence 67665444443 456899999999986532 11122 2334444444 445788 888777
No 152
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=22.16 E-value=96 Score=26.68 Aligned_cols=49 Identities=14% Similarity=-0.064 Sum_probs=32.8
Q ss_pred cCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCC
Q 048797 44 WHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGISFHIGS 102 (240)
Q Consensus 44 ~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS 102 (240)
..+. .|++|+++ .+... +. .-|.+.+++.++.+.+.+.|++ .||+|.++
T Consensus 230 vg~~-~v~vrls~-~~~~~----~~--~~~~~~~~~~~la~~le~~Gvd--~i~v~~~~ 278 (377)
T 2r14_A 230 FGPE-RVGIRLTP-FLELF----GL--TDDEPEAMAFYLAGELDRRGLA--YLHFNEPD 278 (377)
T ss_dssp HCGG-GEEEEECT-TCCCT----TC--CCSCHHHHHHHHHHHHHHTTCS--EEEEECCC
T ss_pred cCCC-cEEEEecc-ccccC----CC--CCCCCHHHHHHHHHHHHHcCCC--EEEEeCCc
Confidence 3445 89999998 42110 11 2366788888888888888876 46777764
No 153
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}
Probab=22.09 E-value=4.3e+02 Score=24.13 Aligned_cols=33 Identities=30% Similarity=0.383 Sum_probs=25.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCcEE--EEEEeeCC
Q 048797 69 DSKCGANLAEIGALLEAALASQLGVV--GISFHIGS 102 (240)
Q Consensus 69 ~skFG~~~~~~~~~l~~a~~~~l~~~--Glh~H~gS 102 (240)
+++|| +.+++.++++.+.+.||+|+ .+-=|.|.
T Consensus 196 ~~~~G-~~~~~~~lv~~~H~~Gi~VilD~V~NH~~~ 230 (618)
T 3m07_A 196 HSAYG-TPDDFKAFIDAAHGYGLSVVLDIVLNHFGP 230 (618)
T ss_dssp CTTTC-CHHHHHHHHHHHHHTTCEEEEEECCSCCCS
T ss_pred CcCcC-CHHHHHHHHHHHHHCCCEEEEeecCccCCC
Confidence 44899 48999999999999998753 45556654
No 154
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=22.04 E-value=1.4e+02 Score=27.64 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=32.2
Q ss_pred ccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCC
Q 048797 43 KWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGISFHIGS 102 (240)
Q Consensus 43 ~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS 102 (240)
...++..|.+|+++ .+. . +-|++.++..++.+.+.+ +++. +|+|.|+
T Consensus 220 ~~g~~~~v~~r~s~-~~~-------~--~~g~~~~~~~~~~~~l~~-~~d~--~~v~~~~ 266 (690)
T 3k30_A 220 ECAGRAAVACRITV-EEE-------I--DGGITREDIEGVLRELGE-LPDL--WDFAMGS 266 (690)
T ss_dssp HHTTSSEEEEEEEC-CCC-------S--TTSCCHHHHHHHHHHHTT-SSSE--EEEECSC
T ss_pred HhCCCceEEEEECc-ccc-------C--CCCCCHHHHHHHHHHHHh-hcCE--EEEeccc
Confidence 44567789999998 431 1 348888998888887766 5554 5566553
No 155
>3dnj_A ATP-dependent CLP protease adapter protein CLPS; adaptor, protein-peptide complex, peptide binding protein; 1.15A {Caulobacter vibrioides} SCOP: d.45.1.2 PDB: 3g19_A 3gq0_A 3gq1_A 3gw1_A 3g1b_A 3g3p_A*
Probab=22.01 E-value=1.8e+02 Score=19.33 Aligned_cols=51 Identities=16% Similarity=0.284 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 048797 71 KCGANLAEIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGLTDQMR 135 (240)
Q Consensus 71 kFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~~~~~~ 135 (240)
=||.+.++|.++.-.+...|.-++|.- + +..|-.++.++.+. +++.|+ ++.
T Consensus 29 vf~~~~e~A~~iml~VH~~G~avv~~~----~-------~e~AE~k~~q~~~~-ar~~~~--pL~ 79 (85)
T 3dnj_A 29 FFNKSREDATRIMLHVHQNGVGVCGVY----T-------YEVAETKVAQVIDS-ARRHQH--PLQ 79 (85)
T ss_dssp HHCCCHHHHHHHHHHHHHHSEEEEEEE----C-------HHHHHHHHHHHHHH-HHHTTC--CCC
T ss_pred HhCCCHHHHHHHHHHHhhCCcEEEEEe----c-------HHHHHHHHHHHHHH-HHHcCC--Cce
Confidence 599999999999988888887666652 3 23334444555555 776777 553
No 156
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=21.83 E-value=1.1e+02 Score=25.99 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=31.4
Q ss_pred ccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeC
Q 048797 43 KWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGISFHIG 101 (240)
Q Consensus 43 ~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~g 101 (240)
...+. .|++|+++ .+... .++ +.|.+.+++.++++.+.+.|++. ||+|.+
T Consensus 224 ~vg~~-~v~vrls~-~~~~~--~~~---~~~~~~~~~~~~a~~l~~~G~d~--i~v~~~ 273 (364)
T 1vyr_A 224 EWSAD-RIGIRVSP-IGTFQ--NVD---NGPNEEADALYLIEELAKRGIAY--LHMSET 273 (364)
T ss_dssp HSCGG-GEEEEECC-SSCBT--TBC---CCTTHHHHHHHHHHHHHHTTCSE--EEEECC
T ss_pred hcCCC-cEEEEEcc-ccccc--ccc---CCCCCHHHHHHHHHHHHHhCCCE--EEEecC
Confidence 34445 89999998 42100 000 23556778888888888888765 556654
No 157
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=21.70 E-value=84 Score=23.74 Aligned_cols=29 Identities=28% Similarity=0.258 Sum_probs=23.0
Q ss_pred cCCCCCCcEEEcCCCCCHHHH---HHHHHCCC
Q 048797 4 ALGVSGKSVSLTVALRNENGL---AEALGSNF 32 (240)
Q Consensus 4 ~~G~~~~~Ii~~gp~K~~~~l---~~A~~~gv 32 (240)
..|++++|+++-.+.+..+-+ +.|++.|.
T Consensus 94 ~~Gl~~~rll~v~~~~~~daLwa~EqALrsG~ 125 (161)
T 1oft_A 94 RAGLNRERILLLQAKDNAAALALSCEALRLGR 125 (161)
T ss_dssp HTTCCGGGEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred HcCCCHHHEEEEECCChHHHHHHHHHHHhcCC
Confidence 489999999999998877655 55677764
No 158
>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A
Probab=21.30 E-value=1.7e+02 Score=23.47 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeCC--CC--CC-hHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 76 LAEIGALLEAALASQLGVVGISFHIGS--GA--TD-FGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 76 ~~~~~~~l~~a~~~~l~~~Glh~H~gS--~~--~~-~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
.+++.++.+.+++.|+..+.+ |... +. .+ ++.+.++++..++.++. ++.+|.
T Consensus 52 ~~~~~~~~~~l~~~gl~~~~~--h~~~~~nl~s~d~~~~r~~~~~~~~~~i~~-A~~lGa 108 (303)
T 3aal_A 52 ELNIEAGRQHMQAHGIEEIVV--HAPYIINIGNTTNLDTFSLGVDFLRAEIER-TEAIGA 108 (303)
T ss_dssp GGCHHHHHHHHHHTTCCEEEE--ECCTTCCTTCSSCHHHHHHHHHHHHHHHHH-HHHHTC
T ss_pred HHHHHHHHHHHHHcCCceEEE--eccccccCCCCCcHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 445566666677778743333 4321 11 24 66677777777777777 666665
No 159
>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*
Probab=21.25 E-value=1.4e+02 Score=25.38 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeCCC------CCC-hHHHHHHHHHHHHHHHHHHHhCC
Q 048797 78 EIGALLEAALASQLGVVGISFHIGSG------ATD-FGAFDGAISAAKAVFDAASARHG 129 (240)
Q Consensus 78 ~~~~~l~~a~~~~l~~~Glh~H~gS~------~~~-~~~~~~~i~~~~~~~~~l~~~~g 129 (240)
.+.+.++.++++|.+.+ .+|.|+. ..+ .+.|...++...++.+. +++.|
T Consensus 117 ~~~~~i~~A~~LGa~~v--vv~~G~~g~~~~~~~~~~~~~~~~~e~L~~l~~~-A~~~G 172 (394)
T 1xla_A 117 KVLHNIDLAAEMGAETF--VMWGGREGSEYDGSKDLAAALDRMREGVDTAAGY-IKDKG 172 (394)
T ss_dssp HHHHHHHHHHHTTCSEE--EECCTTCEESSGGGCCHHHHHHHHHHHHHHHHHH-HHHHT
T ss_pred HHHHHHHHHHHhCCCEE--EECCCCCccccccccCHHHHHHHHHHHHHHHHHH-HHhcC
Confidence 45667888889998754 4567753 123 34566777777777766 66667
No 160
>2d1z_A Endo-1,4-beta-D-xylanase; TIM-barrel, retaining enzyme, catalytic-site mutant, chemica hydrolase; 1.60A {Streptomyces olivaceoviridis} PDB: 2d20_A* 2d22_A 2d23_A 2d24_A* 1xyf_A 1isw_A* 1isx_A* 1isy_A* 1isv_A* 1it0_A* 1v6u_A* 1v6v_A* 1v6w_A* 1v6x_A* 1isz_A
Probab=21.16 E-value=62 Score=28.31 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCC--CcEEEEEEeeCCCCCChHHHHHHHH
Q 048797 79 IGALLEAALASQ--LGVVGISFHIGSGATDFGAFDGAIS 115 (240)
Q Consensus 79 ~~~~l~~a~~~~--l~~~Glh~H~gS~~~~~~~~~~~i~ 115 (240)
..++++..++.| ++.+|++.|.+....+++.++++++
T Consensus 185 ~~~~v~~l~~~g~~iDgiG~q~H~~~~~~~~~~~~~~l~ 223 (436)
T 2d1z_A 185 VYNMVRDFKQRGVPIDCVGFQSHFNSGSPYNSNFRTTLQ 223 (436)
T ss_dssp HHHHHHHHHHHTCCCCEEEECCEEBTTBCCCTTHHHHHH
T ss_pred HHHHHHHHHhCCCcccEEEEeeEEcCCCCCHHHHHHHHH
Confidence 344555555555 6789998888765444555555544
No 161
>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}
Probab=21.06 E-value=27 Score=27.49 Aligned_cols=30 Identities=13% Similarity=0.075 Sum_probs=22.1
Q ss_pred cCCCCCCcEEEcCCCCCHHHHHHHHHCCCCcc
Q 048797 4 ALGVSGKSVSLTVALRNENGLAEALGSNFDYA 35 (240)
Q Consensus 4 ~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~~~ 35 (240)
.+|++|++++|-|- +..+++.|.+.|+..+
T Consensus 182 ~lg~~p~e~l~VGD--s~~Di~aA~~aG~~~i 211 (250)
T 4gib_A 182 GLNVNPQNCIGIED--ASAGIDAINSANMFSV 211 (250)
T ss_dssp HHTCCGGGEEEEES--SHHHHHHHHHTTCEEE
T ss_pred HhCCChHHeEEECC--CHHHHHHHHHcCCEEE
Confidence 46788888888775 3578888888887654
No 162
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=20.92 E-value=1.9e+02 Score=22.48 Aligned_cols=48 Identities=10% Similarity=-0.000 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 78 EIGALLEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 78 ~~~~~l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
++.++.+.+++.||++.++|....-...+. ...+ .+++.++. ++++|.
T Consensus 52 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~-~~~~---~~~~~i~~-a~~lG~ 99 (272)
T 2q02_A 52 NYNQVRNLAEKYGLEIVTINAVYPFNQLTE-EVVK---KTEGLLRD-AQGVGA 99 (272)
T ss_dssp CHHHHHHHHHHTTCEEEEEEEETTTTSCCH-HHHH---HHHHHHHH-HHHHTC
T ss_pred CHHHHHHHHHHcCCeEEechhhhccCCcHH-HHHH---HHHHHHHH-HHHhCC
Confidence 445555666788999999987643222232 2333 33444444 444554
No 163
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=20.64 E-value=2.3e+02 Score=23.85 Aligned_cols=47 Identities=19% Similarity=0.366 Sum_probs=32.4
Q ss_pred ccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCC
Q 048797 43 KWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLAEIGALLEAALASQLGVVGISFHIGS 102 (240)
Q Consensus 43 ~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~a~~~~l~~~Glh~H~gS 102 (240)
..+++..|++|+++ .+.. .=|.+.+++.++++.+.+. ++ .||+..|.
T Consensus 206 avg~d~pv~vRls~-~~~~---------~~g~~~~~~~~~a~~l~~~-vd--~i~vs~g~ 252 (343)
T 3kru_A 206 NWPENKPIFVRVSA-DDYM---------EGGINIDMMVEYINMIKDK-VD--LIDVSSGG 252 (343)
T ss_dssp TSCTTSCEEEEEEC-CCSS---------TTSCCHHHHHHHHHHHTTT-CS--EEEEECCC
T ss_pred cCCccCCeEEEeec-hhhh---------ccCccHHHHHHHHHHhhcc-cc--EEeccCCc
Confidence 44567789999998 4211 2278899988888887776 55 56664443
No 164
>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}
Probab=20.59 E-value=44 Score=25.15 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=18.8
Q ss_pred cCCCCCCcEEEcCCCCCHHHHHHHHHCCCC
Q 048797 4 ALGVSGKSVSLTVALRNENGLAEALGSNFD 33 (240)
Q Consensus 4 ~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~ 33 (240)
.+|++|++++|-|-. ..+++.|.+.|+.
T Consensus 152 ~lg~~p~e~l~VgDs--~~Di~aA~~aG~~ 179 (216)
T 3kbb_A 152 RLNVVPEKVVVFEDS--KSGVEAAKSAGIE 179 (216)
T ss_dssp HHTCCGGGEEEEECS--HHHHHHHHHTTCC
T ss_pred hhCCCccceEEEecC--HHHHHHHHHcCCc
Confidence 357777777776643 5677777777765
No 165
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Probab=20.57 E-value=2.2e+02 Score=24.12 Aligned_cols=46 Identities=4% Similarity=-0.084 Sum_probs=33.8
Q ss_pred HHHHHhCCCcEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHHHhCCC
Q 048797 83 LEAALASQLGVVGISFHIGSGATDFGAFDGAISAAKAVFDAASARHGL 130 (240)
Q Consensus 83 l~~a~~~~l~~~Glh~H~gS~~~~~~~~~~~i~~~~~~~~~l~~~~g~ 130 (240)
.+.++++|-+.+.+|++.|+. .+.+.-.+.++...++.+. +++.|+
T Consensus 116 ve~a~~~GADAVk~lv~~g~d-~~~e~~~~q~~~l~rv~~e-c~~~Gi 161 (332)
T 3iv3_A 116 IKRLKEAGADAVKFLLYYDVD-GDPQVNVQKQAYIERIGSE-CQAEDI 161 (332)
T ss_dssp HHHHHHTTCSEEEEEEEECTT-SCHHHHHHHHHHHHHHHHH-HHHHTC
T ss_pred HHHHHHcCCCEEEEEEEcCCC-chHHHHHHHHHHHHHHHHH-HHHcCC
Confidence 456677899999999999995 2344334566777777777 777887
No 166
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=20.41 E-value=3.6e+02 Score=22.29 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=50.8
Q ss_pred EEEcCCCCCHHHHHHHHHCCCCcc-------------CHHHHc-cccCCCCcEEEEEeeCCCCCCcccCCCCCCCCCCHH
Q 048797 12 VSLTVALRNENGLAEALGSNFDYA-------------SQAEIK-GKWHPRCDLLIRIKALDDCKAVCPQAQDSKCGANLA 77 (240)
Q Consensus 12 Ii~~gp~K~~~~l~~A~~~gv~~~-------------s~~EL~-~~~~~~~~v~lRi~~~~~~~~~~~~~~~skFG~~~~ 77 (240)
+++-=.+-+.++...|.+.|+..+ |...++ .+.....+|-+=|.| - ++ -|=.+.+
T Consensus 40 ~~lEvc~~s~~~a~~A~~gGAdRIELc~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRP-R--------gG--dF~Ys~~ 108 (287)
T 3iwp_A 40 FLMEVCVDSVESAVNAERGGADRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRP-R--------GG--DFLYSDR 108 (287)
T ss_dssp SEEEEEESSHHHHHHHHHHTCSEEEECBCGGGTCBCCCHHHHHHHHTTCCSCEEEECCS-S--------SS--CSCCCHH
T ss_pred ceEEEEeCCHHHHHHHHHhCCCEEEECCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEec-C--------CC--CcccCHH
Confidence 444444568889999999888765 444554 111223344333345 2 12 5667776
Q ss_pred HHHHH---HHHHHhCCCcEEEEEEeeC--CCCCChHHHHHHH
Q 048797 78 EIGAL---LEAALASQLGVVGISFHIG--SGATDFGAFDGAI 114 (240)
Q Consensus 78 ~~~~~---l~~a~~~~l~~~Glh~H~g--S~~~~~~~~~~~i 114 (240)
|+... ++.+++.|. .|++|+.= .+..|.+..++.+
T Consensus 109 E~~~M~~dI~~~~~~GA--dGvVfG~L~~dg~iD~~~~~~Li 148 (287)
T 3iwp_A 109 EIEVMKADIRLAKLYGA--DGLVFGALTEDGHIDKELCMSLM 148 (287)
T ss_dssp HHHHHHHHHHHHHHTTC--SEEEECCBCTTSCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC--CEEEEeeeCCCCCcCHHHHHHHH
Confidence 65554 445667775 59999962 2335655444433
No 167
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=20.25 E-value=1.3e+02 Score=25.25 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEee
Q 048797 76 LAEIGALLEAALASQLGVVGISFHI 100 (240)
Q Consensus 76 ~~~~~~~l~~a~~~~l~~~Glh~H~ 100 (240)
.+.+.+.++.+++.|++++.++|+.
T Consensus 94 i~~~~~~i~~a~~lG~~~v~~n~~p 118 (367)
T 1tz9_A 94 IDNYRQTLRNLGKCGISLVCYSFKP 118 (367)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECCCS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3456778888999999998887664
No 168
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=20.03 E-value=3.6e+02 Score=21.94 Aligned_cols=12 Identities=33% Similarity=0.576 Sum_probs=5.4
Q ss_pred HHHHHHhCCCcE
Q 048797 82 LLEAALASQLGV 93 (240)
Q Consensus 82 ~l~~a~~~~l~~ 93 (240)
.++.+++.|+++
T Consensus 126 ~i~~a~~~G~~v 137 (298)
T 2cw6_A 126 ILKAAQSANISV 137 (298)
T ss_dssp HHHHHHHTTCEE
T ss_pred HHHHHHHCCCeE
Confidence 334444455443
Done!