BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048799
(331 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224123708|ref|XP_002319146.1| predicted protein [Populus trichocarpa]
gi|222857522|gb|EEE95069.1| predicted protein [Populus trichocarpa]
Length = 337
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 248/330 (75%), Positives = 282/330 (85%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D LFDE+P+RN+VTWNVMITGLVKWG+LE+A SLF+EMP +NVVSWTGIIDGY R
Sbjct: 8 LGDAMILFDEMPKRNVVTWNVMITGLVKWGKLEFASSLFDEMPEKNVVSWTGIIDGYIRN 67
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
N+ + L+LFRRMV CE +P+EITILA+ PAI G++++C LIHGY EKRGFNAF I
Sbjct: 68 NKYSEGLSLFRRMVVCEGIKPTEITILAILPAISNMGELKSCSLIHGYAEKRGFNAFDIR 127
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V+N +ID Y+KCGCI SA K FEDISVERKNLVSWTSIISGFAMHGM KEAVE FERM+K
Sbjct: 128 VANSIIDCYSKCGCIASAFKFFEDISVERKNLVSWTSIISGFAMHGMWKEAVEYFERMEK 187
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
LKPNRVTFLSVLNACSHGGLV+EGL+ F KMV E VLPDIKHYGC++DMLGR GRLE
Sbjct: 188 AGLKPNRVTFLSVLNACSHGGLVDEGLRCFYKMVNEHGVLPDIKHYGCVVDMLGRTGRLE 247
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AE +A IPSEI NVV+WRTLLGACSFHGNVEMGERVTRKI+EMERGYGGDYVLMYNI
Sbjct: 248 EAENMALEIPSEIVNVVIWRTLLGACSFHGNVEMGERVTRKIMEMERGYGGDYVLMYNIF 307
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
AG RY DAERLR+++++RNA K PG SLV
Sbjct: 308 AGAGRYEDAERLRKLMNKRNAFKLPGNSLV 337
>gi|255568986|ref|XP_002525463.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535276|gb|EEF36953.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 337
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 243/331 (73%), Positives = 278/331 (83%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
FL + FDE+PE+N VTWNVMITGLVKWG+LE+ARS F++MP +NVVSWTGIIDGY R
Sbjct: 7 FLGNALLAFDEMPEKNSVTWNVMITGLVKWGKLEFARSFFDDMPEKNVVSWTGIIDGYVR 66
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
MNR LALFRRMV+ E PSEITILA+ PAI G+++NC LIH EKRGFN+ I
Sbjct: 67 MNRITEGLALFRRMVSFEGIAPSEITILAILPAISGIGELQNCGLIHCLVEKRGFNSSDI 126
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V+N +IDTYAKCGCI SA + FE+ISVERKNLVSWTSIISGFAMHGMG+EAV+ FE M+
Sbjct: 127 RVTNSIIDTYAKCGCIVSASRFFEEISVERKNLVSWTSIISGFAMHGMGQEAVKRFENME 186
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ LKPNRVTFLSVLNACSHGGLV EG +FF+KMV + +LPDIKHYGCL+DMLGR GRL
Sbjct: 187 RTGLKPNRVTFLSVLNACSHGGLVAEGHEFFEKMVNQYSILPDIKHYGCLVDMLGRTGRL 246
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+AEK+A GIPSEI N V+WRTLLGACSFHGN E+GERVTRKI+EMERGYGGDYVLMYNI
Sbjct: 247 EEAEKLALGIPSEIVNAVIWRTLLGACSFHGNSEIGERVTRKIMEMERGYGGDYVLMYNI 306
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
AGV R+ DAERLR ++DERNA K PG SLV
Sbjct: 307 FAGVGRFEDAERLRVLMDERNAFKVPGHSLV 337
>gi|225444407|ref|XP_002265471.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Vitis vinifera]
Length = 470
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/327 (68%), Positives = 258/327 (78%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ ++FDE+P RN VTWNV ITGL KWGEL A SL +EMP VVSWT IIDGYTRMN+
Sbjct: 143 EAKQVFDEMPVRNSVTWNVFITGLAKWGELHLACSLLDEMPRPTVVSWTTIIDGYTRMNQ 202
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
ALALF M E +P+EIT+LA+FPAI G + CQLIH YGEK G NA I +
Sbjct: 203 PKQALALFLTMFLDEGIKPTEITLLAIFPAISNLGALEICQLIHTYGEKSGLNASDIRIR 262
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
L+DTYAKCGCI SA +F +I+ + +NLVSWTSIIS FAMHGM KEA+ENFERMQK
Sbjct: 263 TSLLDTYAKCGCIESASGVFGEIAAKGRNLVSWTSIISAFAMHGMAKEALENFERMQKEC 322
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
LKPNR+TFLSVLNACSHGGLVEEGLK F KMV EC++ PD+KHYGCLIDMLGRAGRL++A
Sbjct: 323 LKPNRITFLSVLNACSHGGLVEEGLKLFTKMVNECQISPDVKHYGCLIDMLGRAGRLDEA 382
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
EK+A IP + NVV+WRTLLGACSFHGNVEMG RVTRKILEMER YGGDYVL+ NI AG
Sbjct: 383 EKMALEIPDYVVNVVIWRTLLGACSFHGNVEMGARVTRKILEMERKYGGDYVLLSNIFAG 442
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSL 330
V R+ D ER+RR++DERNA K PG S
Sbjct: 443 VGRFWDVERVRRLMDERNASKVPGLSF 469
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 115/281 (40%), Gaps = 38/281 (13%)
Query: 45 CRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQ 104
C +V SW ++ Y+ A LFR + P + + ++++ +
Sbjct: 48 CMDVTSWNVLLRHYSLGIFPQEAFLLFRHLRLHHVYPPLSFDSFSFSFLLKACANLQHRE 107
Query: 105 ---LIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE------------ 149
+H K GF FH++V L++ YA CG A ++F+++ V
Sbjct: 108 GGLQLHALTLKLGFE-FHVYVHTVLLNVYAACGAFLEAKQVFDEMPVRNSVTWNVFITGL 166
Query: 150 -----------------RKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTF 191
R +VSWT+II G+ K+A+ F M +KP +T
Sbjct: 167 AKWGELHLACSLLDEMPRPTVVSWTTIIDGYTRMNQPKQALALFLTMFLDEGIKPTEITL 226
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
L++ A S+ G +E + DI+ L+D + G +E A V I
Sbjct: 227 LAIFPAISNLGALEICQLIHTYGEKSGLNASDIRIRTSLLDTYAKCGCIESASGVFGEIA 286
Query: 252 SEITNVVVWRTLLGACSFHG----NVEMGERVTRKILEMER 288
++ N+V W +++ A + HG +E ER+ ++ L+ R
Sbjct: 287 AKGRNLVSWTSIISAFAMHGMAKEALENFERMQKECLKPNR 327
>gi|147772248|emb|CAN78346.1| hypothetical protein VITISV_033453 [Vitis vinifera]
Length = 538
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 221/321 (68%), Positives = 257/321 (80%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ ++FDE+P RN VTWNV ITGL KWGEL ARSL +EMP VVSWT IIDGYTRMN+
Sbjct: 143 EAKQVFDEMPVRNSVTWNVFITGLAKWGELHLARSLLDEMPMPTVVSWTTIIDGYTRMNQ 202
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
ALALF M E +P+EIT+LA+FPAI G + CQLIH YGEK G NA I +
Sbjct: 203 PKQALALFLTMFLDEGIKPTEITLLAIFPAISNLGALEICQLIHTYGEKSGLNASDIRIR 262
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
L+DTYAKCGCI SA ++F +I + +NLVSWTSIIS FAMHGM KEA+ENFERMQK
Sbjct: 263 TSLLDTYAKCGCIESASRVFGEIDAKSRNLVSWTSIISAFAMHGMAKEALENFERMQKEC 322
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
LKPNR+TFLSVLNACSHGGLVEEGLKFF KMV + ++ PD+KHYGCLIDMLGRAGRL++A
Sbjct: 323 LKPNRITFLSVLNACSHGGLVEEGLKFFTKMVNKYQISPDVKHYGCLIDMLGRAGRLDEA 382
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
EK+A IP+ + NVV+WRTLLGACSFHGNVEMG RVTRKILEME+ YGGDYVL+ NI AG
Sbjct: 383 EKMALEIPNYVVNVVIWRTLLGACSFHGNVEMGARVTRKILEMEKKYGGDYVLLSNIFAG 442
Query: 304 VWRYGDAERLRRVVDERNALK 324
V R+ D ER+RR++DERNA K
Sbjct: 443 VGRFWDVERVRRLMDERNASK 463
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 115/281 (40%), Gaps = 38/281 (13%)
Query: 45 CRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQ 104
C +V SW ++ Y+ A LFR + P + + ++++ +
Sbjct: 48 CMDVTSWNVLLRHYSLGIFPQEAFLLFRHLRLHHVYPPLSFDSFSFSFLLKACANLQHRE 107
Query: 105 ---LIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK---------- 151
+H K GF FH++V L++ YA CG A ++F+++ V
Sbjct: 108 GGLQLHALTLKLGFE-FHVYVHTVLLNVYAACGAFLEAKQVFDEMPVRNSVTWNVFITGL 166
Query: 152 -------------------NLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTF 191
+VSWT+II G+ K+A+ F M +KP +T
Sbjct: 167 AKWGELHLARSLLDEMPMPTVVSWTTIIDGYTRMNQPKQALALFLTMFLDEGIKPTEITL 226
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
L++ A S+ G +E + DI+ L+D + G +E A +V I
Sbjct: 227 LAIFPAISNLGALEICQLIHTYGEKSGLNASDIRIRTSLLDTYAKCGCIESASRVFGEID 286
Query: 252 SEITNVVVWRTLLGACSFHG----NVEMGERVTRKILEMER 288
++ N+V W +++ A + HG +E ER+ ++ L+ R
Sbjct: 287 AKSRNLVSWTSIISAFAMHGMAKEALENFERMQKECLKPNR 327
>gi|449459636|ref|XP_004147552.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Cucumis sativus]
gi|449484988|ref|XP_004157038.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Cucumis sativus]
Length = 495
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 214/331 (64%), Positives = 261/331 (78%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
FL D K+FDE+P+R+ VTWNV+ITGLVK+GEL+ AR +F++MP R VVSWT IIDGYTR
Sbjct: 165 FLLDAMKVFDEMPDRSSVTWNVLITGLVKFGELKRARDVFDQMPMRTVVSWTAIIDGYTR 224
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+NR A LF RMVA EP+E+T+L +FPAI G ++ CQ +H Y EK+GF +
Sbjct: 225 LNRHEEAAGLFWRMVAHFGMEPNEVTLLTIFPAISNLGALKLCQSVHAYAEKKGFKVSDV 284
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
++N LID YAKCGCI SA K+FE++S E KNLVSWTSIISGF MHGMGKEA+E+FE M+
Sbjct: 285 RIANSLIDCYAKCGCINSASKVFEEMSAEIKNLVSWTSIISGFTMHGMGKEAMESFEIME 344
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
K +PNRVTFLS+++ACSHGGLVEEGL+FF+KMV E ++ PDI HYG LIDMLGRAGR+
Sbjct: 345 KEGHEPNRVTFLSIVSACSHGGLVEEGLEFFEKMVAEYQIKPDIMHYGSLIDMLGRAGRI 404
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+AEK+A IP EI +VV+WRTLLGACSFHGNV M ERVT++IL ME YGGDYVLM NI
Sbjct: 405 EEAEKIALEIPKEIASVVIWRTLLGACSFHGNVSMAERVTQRILNMEGAYGGDYVLMSNI 464
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A +YGDAER RR++D K PG+SLV
Sbjct: 465 FAAAGKYGDAERWRRLMDSSKFSKIPGQSLV 495
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 102/237 (43%), Gaps = 35/237 (14%)
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI------------------- 146
+H K GF + H++V ++ YA G + A+K+F+++
Sbjct: 137 LHALTFKLGFPS-HVYVQTAVLRMYAASGFLLDAMKVFDEMPDRSSVTWNVLITGLVKFG 195
Query: 147 ----------SVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFLSVL 195
+ + +VSWT+II G+ +EA F RM ++PN VT L++
Sbjct: 196 ELKRARDVFDQMPMRTVVSWTAIIDGYTRLNRHEEAAGLFWRMVAHFGMEPNEVTLLTIF 255
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
A S+ G ++ ++ + D++ LID + G + A KV + +EI
Sbjct: 256 PAISNLGALKLCQSVHAYAEKKGFKVSDVRIANSLIDCYAKCGCINSASKVFEEMSAEIK 315
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMER-GYGGDYVLMYNILAGVWRYGDAE 311
N+V W +++ + HG MG+ ME+ G+ + V +I++ G E
Sbjct: 316 NLVSWTSIISGFTMHG---MGKEAMESFEIMEKEGHEPNRVTFLSIVSACSHGGLVE 369
>gi|356506146|ref|XP_003521848.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Glycine max]
Length = 503
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 208/331 (62%), Positives = 263/331 (79%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L + +++F E+ RNLV+WNV ITGL+KWGE+E A S+F +MP R+VVSWT +IDGYTR
Sbjct: 173 LLVEAAQVFYEMQHRNLVSWNVFITGLIKWGEVELACSVFNQMPARSVVSWTLVIDGYTR 232
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
N+ AL LFR+M+ + EP+E+T+L +FPAI G ++ CQ +H Y EKRGFNAF +
Sbjct: 233 RNQPIKALTLFRKMIEVDGIEPTEVTLLTIFPAIANIGCIKICQSVHVYVEKRGFNAFDV 292
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
++N L+D YAKCGCI S + F++I +R+NLVSWTS ISGFAM+GMG+EA+E+FE M+
Sbjct: 293 RITNALLDLYAKCGCIASMSRFFQEIPDQRRNLVSWTSTISGFAMNGMGREALESFESME 352
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
K L+PN VTFL VL+ACSHGGLVEEG+ FF KMV++ ++PDIKHYGC+IDMLGRAGRL
Sbjct: 353 KTGLRPNHVTFLGVLSACSHGGLVEEGINFFVKMVKDWCLVPDIKHYGCVIDMLGRAGRL 412
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+AEKVA +P E+ N V+WRTLLGACS H NVE+G+RVT KILEMERG+GGDYVLM NI
Sbjct: 413 EEAEKVALQVPHEVANAVMWRTLLGACSVHNNVEIGQRVTNKILEMERGHGGDYVLMSNI 472
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
L GV R+ DAERLR V+D+R A K PG S V
Sbjct: 473 LVGVGRFKDAERLREVIDKRIAFKLPGYSFV 503
>gi|359475755|ref|XP_003631749.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g09220, mitochondrial-like [Vitis vinifera]
Length = 509
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 218/331 (65%), Positives = 258/331 (77%), Gaps = 5/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + ++ DE+P RN VTWNV+ITGL KWGEL ARSLF+EMP VVSWT IIDGYTRM
Sbjct: 183 LLEAKQVLDEMPVRNSVTWNVLITGLAKWGELHLARSLFDEMPMPTVVSWTTIIDGYTRM 242
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
N+ ALALFR M E +P+EI +LA+FPAI G + CQL+H YGEK G NA I
Sbjct: 243 NQPKQALALFRTMFIDEGIKPTEIALLAIFPAISNLGALELCQLVHMYGEKSGLNASDIR 302
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N L+DTYAKCGC+ S ++F +I+ + +NLVSWTS+IS FAMHGM KEA+E + K
Sbjct: 303 IRNSLLDTYAKCGCMESIXRVFGEIAAKSRNLVSWTSVISAFAMHGMAKEALE----ILK 358
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEG-LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
LKPNR+TFLSVLNACSHGGLVEEG LKFF KMV E ++ PD+KHYG LIDMLGRAGRL
Sbjct: 359 ECLKPNRITFLSVLNACSHGGLVEEGRLKFFAKMVNEYQMSPDVKHYGGLIDMLGRAGRL 418
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
++AEK+A P ++ NVV+WRTLLGACSFHGNVEMG RVTRKILEMER YGGDYVL+ NI
Sbjct: 419 DEAEKMALEFPDDVVNVVIWRTLLGACSFHGNVEMGARVTRKILEMERKYGGDYVLLSNI 478
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
AGV R+ D ER+RR++DERNA K PG SLV
Sbjct: 479 FAGVGRFWDVERVRRLMDERNASKLPGLSLV 509
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 91/215 (42%), Gaps = 35/215 (16%)
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-------------- 151
+H K GF FH+++ L++ YA CG + A ++ +++ V
Sbjct: 154 LHALTLKAGFE-FHVYLHTVLLNVYAVCGALLEAKQVLDEMPVRNSVTWNVLITGLAKWG 212
Query: 152 ---------------NLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFLSVL 195
+VSWT+II G+ K+A+ F M +KP + L++
Sbjct: 213 ELHLARSLFDEMPMPTVVSWTTIIDGYTRMNQPKQALALFRTMFIDEGIKPTEIALLAIF 272
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVL--PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
A S+ G +E L M E L DI+ L+D + G +E +V I ++
Sbjct: 273 PAISNLGALE--LCQLVHMYGEKSGLNASDIRIRNSLLDTYAKCGCMESIXRVFGEIAAK 330
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
N+V W +++ A + HG + + ++ L+ R
Sbjct: 331 SRNLVSWTSVISAFAMHGMAKEALEILKECLKPNR 365
>gi|356554965|ref|XP_003545811.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Glycine max]
Length = 517
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/331 (61%), Positives = 263/331 (79%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L + +++F E+ RNLV+WNV ITGL+K GE+E A S+F +MP R+VVSWT +IDGYTR
Sbjct: 187 LLVEAAQVFYEMQHRNLVSWNVFITGLIKLGEVELACSVFNQMPARSVVSWTLVIDGYTR 246
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
N+ AL LFR+M+ + EP+E+T+L +FPAI G ++ CQ +HGY EKRGFNAF +
Sbjct: 247 RNQPIKALTLFRKMIEVDGIEPTEVTLLTIFPAIANIGCIKICQSVHGYVEKRGFNAFDV 306
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
++N L+D YAKCGCI S + F++I +R+NLVSWTS ISGFAM+GMG+EA+E+FE M+
Sbjct: 307 RITNALLDLYAKCGCIASVSRFFQEIPDQRRNLVSWTSTISGFAMNGMGREALESFESME 366
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
K L+PN VTFL VL+ACSHGGLVEEG+ FF KMV++ ++PDIKHYGC+IDMLGRAGRL
Sbjct: 367 KAGLRPNHVTFLGVLSACSHGGLVEEGINFFVKMVKDWCLVPDIKHYGCVIDMLGRAGRL 426
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+AEK+A +P E+ N V+WRTLLGAC+ H NVE+G+RVT KILEMERG+GGDYVLM NI
Sbjct: 427 EEAEKIALQVPHEVANAVMWRTLLGACNVHNNVEIGQRVTNKILEMERGHGGDYVLMSNI 486
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
L GV R+ DAE+LR ++D+R A K PG S V
Sbjct: 487 LVGVGRFKDAEKLREMIDKRIAFKLPGYSFV 517
>gi|147860607|emb|CAN79717.1| hypothetical protein VITISV_027522 [Vitis vinifera]
Length = 610
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 212/306 (69%), Positives = 241/306 (78%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ ++FDE+P RN VTWNV ITGL KWGEL A SL +EMP VVSWT IIDGYTRMN+
Sbjct: 143 EAKQVFDEMPVRNSVTWNVFITGLAKWGELHLACSLLDEMPRPTVVSWTTIIDGYTRMNQ 202
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
ALALF M E +P+EIT+LA+FPAI G + CQLIH YGEK G NA I +
Sbjct: 203 PKQALALFLTMFLDEGIKPTEITLLAIFPAISNLGALEICQLIHTYGEKSGLNASDIRIR 262
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
L+DTYAKCGCI SA +F +I+ + +NLVSWTSIIS FAMHGM KEA+ENFERMQK
Sbjct: 263 TSLLDTYAKCGCIESASGVFGEIAAKGRNLVSWTSIISAFAMHGMAKEALENFERMQKEC 322
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
LKPNR+TFLSVLNACSHGGLVEEGLK F KMV EC++ PD+KHYGCLIDMLGRAGRL++A
Sbjct: 323 LKPNRITFLSVLNACSHGGLVEEGLKLFTKMVNECQISPDVKHYGCLIDMLGRAGRLDEA 382
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
EK+A IP + NVV+WRTLLGACSFHGNVEMG RVTRKILEMER YGGDYVL+ NI AG
Sbjct: 383 EKMALEIPDYVVNVVIWRTLLGACSFHGNVEMGARVTRKILEMERKYGGDYVLLSNIFAG 442
Query: 304 VWRYGD 309
V R D
Sbjct: 443 VGRIKD 448
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 115/281 (40%), Gaps = 38/281 (13%)
Query: 45 CRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQ 104
C +V SW ++ Y+ A LFR + P + + ++++ +
Sbjct: 48 CMDVTSWNVLLRHYSLGIFPQEAFLLFRHLRLHHVYPPLSFDSFSFSFLLKACANLQHRE 107
Query: 105 ---LIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE------------ 149
+H K GF FH++V L++ YA CG A ++F+++ V
Sbjct: 108 GGLQLHALTLKLGFE-FHVYVHTVLLNVYAACGAFLEAKQVFDEMPVRNSVTWNVFITGL 166
Query: 150 -----------------RKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTF 191
R +VSWT+II G+ K+A+ F M +KP +T
Sbjct: 167 AKWGELHLACSLLDEMPRPTVVSWTTIIDGYTRMNQPKQALALFLTMFLDEGIKPTEITL 226
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
L++ A S+ G +E + DI+ L+D + G +E A V I
Sbjct: 227 LAIFPAISNLGALEICQLIHTYGEKSGLNASDIRIRTSLLDTYAKCGCIESASGVFGEIA 286
Query: 252 SEITNVVVWRTLLGACSFHG----NVEMGERVTRKILEMER 288
++ N+V W +++ A + HG +E ER+ ++ L+ R
Sbjct: 287 AKGRNLVSWTSIISAFAMHGMAKEALENFERMQKECLKPNR 327
>gi|302144057|emb|CBI23162.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/310 (68%), Positives = 242/310 (78%), Gaps = 3/310 (0%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ ++FDE+P RN VTWNV ITGL KWGEL A SL +EMP VVSWT IIDGYTRMN+
Sbjct: 143 EAKQVFDEMPVRNSVTWNVFITGLAKWGELHLACSLLDEMPRPTVVSWTTIIDGYTRMNQ 202
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
ALALF M E +P+EIT+LA+FPAI G + CQLIH YGEK G NA I +
Sbjct: 203 PKQALALFLTMFLDEGIKPTEITLLAIFPAISNLGALEICQLIHTYGEKSGLNASDIRIR 262
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
L+DTYAKCGCI SA +F +I+ + +NLVSWTSIIS FAMHGM KEA+ENFERMQK
Sbjct: 263 TSLLDTYAKCGCIESASGVFGEIAAKGRNLVSWTSIISAFAMHGMAKEALENFERMQKEC 322
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
LKPNR+TFLSVLNACSHGGLVEEGLK F KMV EC++ PD+KHYGCLIDMLGRAGRL++A
Sbjct: 323 LKPNRITFLSVLNACSHGGLVEEGLKLFTKMVNECQISPDVKHYGCLIDMLGRAGRLDEA 382
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
EK+A IP + NVV+WRTLLGACSFHGNVEMG RVTRKILEMER YGGDYVL+ NI AG
Sbjct: 383 EKMALEIPDYVVNVVIWRTLLGACSFHGNVEMGARVTRKILEMERKYGGDYVLLSNIFAG 442
Query: 304 VWRYGDAERL 313
V G ER
Sbjct: 443 V---GSLERF 449
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 115/281 (40%), Gaps = 38/281 (13%)
Query: 45 CRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQ 104
C +V SW ++ Y+ A LFR + P + + ++++ +
Sbjct: 48 CMDVTSWNVLLRHYSLGIFPQEAFLLFRHLRLHHVYPPLSFDSFSFSFLLKACANLQHRE 107
Query: 105 ---LIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE------------ 149
+H K GF FH++V L++ YA CG A ++F+++ V
Sbjct: 108 GGLQLHALTLKLGFE-FHVYVHTVLLNVYAACGAFLEAKQVFDEMPVRNSVTWNVFITGL 166
Query: 150 -----------------RKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTF 191
R +VSWT+II G+ K+A+ F M +KP +T
Sbjct: 167 AKWGELHLACSLLDEMPRPTVVSWTTIIDGYTRMNQPKQALALFLTMFLDEGIKPTEITL 226
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
L++ A S+ G +E + DI+ L+D + G +E A V I
Sbjct: 227 LAIFPAISNLGALEICQLIHTYGEKSGLNASDIRIRTSLLDTYAKCGCIESASGVFGEIA 286
Query: 252 SEITNVVVWRTLLGACSFHG----NVEMGERVTRKILEMER 288
++ N+V W +++ A + HG +E ER+ ++ L+ R
Sbjct: 287 AKGRNLVSWTSIISAFAMHGMAKEALENFERMQKECLKPNR 327
>gi|357469567|ref|XP_003605068.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506123|gb|AES87265.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 494
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 203/331 (61%), Positives = 260/331 (78%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
FL D +++F E+P+RN VTWNV I+GL+KWG+LE+ARS+F+ M R+VVSWT +IDGYTR
Sbjct: 164 FLVDAAQVFGEMPDRNTVTWNVFISGLIKWGQLEFARSVFDRMVVRSVVSWTLVIDGYTR 223
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
MN+ ALALFR+M+ + EP+E+T+L VFPAI G+V+ C+ +HGY EKRGFNA I
Sbjct: 224 MNKPLKALALFRKMIEVDGIEPNEVTLLTVFPAIAHLGNVKMCESVHGYVEKRGFNAVDI 283
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+ N LID YAKCGCI SA LF ++ R+N VSW S++SG+A GM +EAV+ FE+M+
Sbjct: 284 RIVNALIDLYAKCGCIESASGLFSEMPDWRRNSVSWNSVMSGYATFGMVREAVDTFEKME 343
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
K ++PN V FLS+L+ACSH GLVEEGL+FF KMV + ++PDIKHYGC+IDMLGRAGRL
Sbjct: 344 KAGVRPNHVAFLSILSACSHSGLVEEGLEFFGKMVNDYGLVPDIKHYGCVIDMLGRAGRL 403
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
+AEKVA +P E N V+WRTLLGACS H NVE+G+RVT+KILEME+G+GGDYVLM NI
Sbjct: 404 GEAEKVALEVPHEAANDVIWRTLLGACSVHDNVEIGKRVTKKILEMEKGHGGDYVLMSNI 463
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A V R+ D ERLR ++D+RN K PG S+V
Sbjct: 464 FASVGRFKDVERLREMIDKRNVFKLPGYSIV 494
>gi|334182414|ref|NP_172393.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75116771|sp|Q680Z7.1|PPR24_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g09220, mitochondrial; Flags: Precursor
gi|51969004|dbj|BAD43194.1| hypothetical protein [Arabidopsis thaliana]
gi|51969582|dbj|BAD43483.1| hypothetical protein [Arabidopsis thaliana]
gi|51969876|dbj|BAD43630.1| hypothetical protein [Arabidopsis thaliana]
gi|62318861|dbj|BAD93927.1| hypothetical protein [Arabidopsis thaliana]
gi|332190294|gb|AEE28415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/329 (59%), Positives = 240/329 (72%), Gaps = 2/329 (0%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
D K+FDE+PERN VTWNVMITGL G+ E A E+MP R VVSWT IIDGY R+++
Sbjct: 176 DAHKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMPNRTVVSWTTIIDGYARVDK 235
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
A+ LF RMVAC+ +P+EITILA+ PA+W GD++ C +H Y KRGF I V+
Sbjct: 236 PKEAILLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCGSVHAYVGKRGFVPCDIRVT 295
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N LID YAKCGCI SA K F +I RKNLVSWT++IS FA+HGMGKEAV F+ M+++
Sbjct: 296 NSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVSMFKDMERLG 355
Query: 184 LKPNRVTFLSVLNACSHGGLVEEG-LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
LKPNRVT +SVLNACSHGGL EE L+FF+ MV E ++ PD+KHYGCL+DML R GRLE+
Sbjct: 356 LKPNRVTMISVLNACSHGGLAEEEFLEFFNTMVNEYKITPDVKHYGCLVDMLRRKGRLEE 415
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302
AEK+A IP E VVWR LLGACS + + E+ ERVTRK++E+ER +GGDYVLM NI
Sbjct: 416 AEKIALEIPIE-EKAVVWRMLLGACSVYDDAELAERVTRKLMELERSHGGDYVLMSNIFC 474
Query: 303 GVWRYGDAERLRRVVDERNALKFPGRSLV 331
G R+ DA+R R+ +D R K PG S V
Sbjct: 475 GTGRFLDAQRFRKQMDVRGVAKLPGHSQV 503
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 101/231 (43%), Gaps = 35/231 (15%)
Query: 112 KRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI------------------------- 146
K GF + H++V L+ Y G + A K+F+++
Sbjct: 151 KLGFES-HVYVQTALVGMYLVGGNMIDAHKVFDEMPERNPVTWNVMITGLTNLGDFEKAL 209
Query: 147 ----SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV-VLKPNRVTFLSVLNACSHG 201
+ + +VSWT+II G+A KEA+ F RM +KPN +T L++L A +
Sbjct: 210 CFLEKMPNRTVVSWTTIIDGYARVDKPKEAILLFSRMVACDAIKPNEITILAILPAVWNL 269
Query: 202 GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWR 261
G ++ + + V DI+ LID + G ++ A K IP+ N+V W
Sbjct: 270 GDLKMCGSVHAYVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWT 329
Query: 262 TLLGACSFHGNVEMGERVTRKILEMER-GYGGDYVLMYNILAGVWRYGDAE 311
T++ A + HG MG+ +MER G + V M ++L G AE
Sbjct: 330 TMISAFAIHG---MGKEAVSMFKDMERLGLKPNRVTMISVLNACSHGGLAE 377
>gi|3249111|gb|AAC24094.1| T12M4.7 [Arabidopsis thaliana]
Length = 412
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/329 (59%), Positives = 240/329 (72%), Gaps = 2/329 (0%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
D K+FDE+PERN VTWNVMITGL G+ E A E+MP R VVSWT IIDGY R+++
Sbjct: 84 DAHKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMPNRTVVSWTTIIDGYARVDK 143
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
A+ LF RMVAC+ +P+EITILA+ PA+W GD++ C +H Y KRGF I V+
Sbjct: 144 PKEAILLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCGSVHAYVGKRGFVPCDIRVT 203
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N LID YAKCGCI SA K F +I RKNLVSWT++IS FA+HGMGKEAV F+ M+++
Sbjct: 204 NSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVSMFKDMERLG 263
Query: 184 LKPNRVTFLSVLNACSHGGLVEEG-LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
LKPNRVT +SVLNACSHGGL EE L+FF+ MV E ++ PD+KHYGCL+DML R GRLE+
Sbjct: 264 LKPNRVTMISVLNACSHGGLAEEEFLEFFNTMVNEYKITPDVKHYGCLVDMLRRKGRLEE 323
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302
AEK+A IP E VVWR LLGACS + + E+ ERVTRK++E+ER +GGDYVLM NI
Sbjct: 324 AEKIALEIPIE-EKAVVWRMLLGACSVYDDAELAERVTRKLMELERSHGGDYVLMSNIFC 382
Query: 303 GVWRYGDAERLRRVVDERNALKFPGRSLV 331
G R+ DA+R R+ +D R K PG S V
Sbjct: 383 GTGRFLDAQRFRKQMDVRGVAKLPGHSQV 411
>gi|48427660|gb|AAT42379.1| At1g09220 [Arabidopsis thaliana]
Length = 338
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/329 (59%), Positives = 240/329 (72%), Gaps = 2/329 (0%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
D K+FDE+PERN VTWNVMITGL G+ E A E+MP R VVSWT IIDGY R+++
Sbjct: 10 DAHKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMPNRTVVSWTTIIDGYARVDK 69
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
A+ LF RMVAC+ +P+EITILA+ PA+W GD++ C +H Y KRGF I V+
Sbjct: 70 PKEAILLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCGSVHAYVGKRGFVPCDIRVT 129
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N LID YAKCGCI SA K F +I RKNLVSWT++IS FA+HGMGKEAV F+ M+++
Sbjct: 130 NSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVSMFKDMERLG 189
Query: 184 LKPNRVTFLSVLNACSHGGLVEEG-LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
LKPNRVT +SVLNACSHGGL EE L+FF+ MV E ++ PD+KHYGCL+DML R GRLE+
Sbjct: 190 LKPNRVTMISVLNACSHGGLAEEEFLEFFNTMVNEYKITPDVKHYGCLVDMLRRKGRLEE 249
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302
AEK+A IP E VVWR LLGACS + + E+ ERVTRK++E+ER +GGDYVLM NI
Sbjct: 250 AEKIALEIPIE-EKAVVWRMLLGACSVYDDAELAERVTRKLMELERSHGGDYVLMSNIFC 308
Query: 303 GVWRYGDAERLRRVVDERNALKFPGRSLV 331
G R+ DA+R R+ +D R K PG S V
Sbjct: 309 GTGRFLDAQRFRKQMDVRGVAKLPGHSQV 337
>gi|297849224|ref|XP_002892493.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338335|gb|EFH68752.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 337
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/329 (59%), Positives = 240/329 (72%), Gaps = 2/329 (0%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
D K+FDE+PERN VTWNVMITGL G+ E A E+M R VVSWT IIDGY R+N+
Sbjct: 10 DAYKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMLNRTVVSWTTIIDGYARVNK 69
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
A LF RMVAC+ +P+EITILA+ PA+W GD++ C +H Y KRGF I V+
Sbjct: 70 PKEATLLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCGSVHAYVGKRGFVPCDIRVT 129
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N LID YAKCGCI SA K F +I RKNLVSWT++IS FAMHGMGKEAV F+ M+++
Sbjct: 130 NSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAMHGMGKEAVNMFKDMERLG 189
Query: 184 LKPNRVTFLSVLNACSHGGLVEEG-LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
LKPNRVT +SVLNACSHGGL EE LKFF+KMV + ++ PD+KHYGCL+DML R GRLE+
Sbjct: 190 LKPNRVTMISVLNACSHGGLAEEEFLKFFNKMVNKYKITPDVKHYGCLVDMLRRKGRLEE 249
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302
AEK+A IP + VVWR LLGAC+ + + EM ERVTRK++E+ER +GGDYVLM NI
Sbjct: 250 AEKIALEIPID-QKAVVWRMLLGACNVYDDAEMAERVTRKLMELERSHGGDYVLMSNIFC 308
Query: 303 GVWRYGDAERLRRVVDERNALKFPGRSLV 331
G R+ DA+R R+++D R K PG S V
Sbjct: 309 GNGRFSDAQRFRKLMDVRGVAKLPGHSQV 337
>gi|357131180|ref|XP_003567218.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Brachypodium distachyon]
Length = 474
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/330 (58%), Positives = 243/330 (73%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D FDE+P +N+V+WNVMITG GE+EYAR LFE MP RNVVSWTG+IDGYTR
Sbjct: 145 LVDARMAFDEMPVKNVVSWNVMITGFAGRGEIEYARLLFERMPSRNVVSWTGLIDGYTRS 204
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
S A+AL RRM+A E P+EIT+LAV PAI G + + +HGY EK G I
Sbjct: 205 CHSVEAVALLRRMMA-EGISPTEITVLAVVPAISDIGRILMGETLHGYCEKNGL-VLDIR 262
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LID YAK G I S+LK+F + + R+NLVSWTSIISGFAMHG+ EAVE F M++
Sbjct: 263 VGNSLIDLYAKIGSIQSSLKVFHGM-LNRRNLVSWTSIISGFAMHGLSTEAVELFAEMRR 321
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++PNRVTFLSVLNACSHGGLVE+G++FF MV E + P+IKH+GC+IDMLGRAGRL
Sbjct: 322 SGIRPNRVTFLSVLNACSHGGLVEQGVEFFKSMVYEYNINPEIKHFGCIIDMLGRAGRLC 381
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AE+V G+P E+ N +VWRTLL CS +G VEMG+R +KIL ER GGD+V++ N+L
Sbjct: 382 EAEQVIGGLPMEV-NSIVWRTLLACCSKYGEVEMGKRAMKKILHTERESGGDFVVVSNML 440
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ R+ DAER R+++DERNA+K PG +LV
Sbjct: 441 TELGRFSDAERSRKLLDERNAVKVPGLALV 470
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 108/269 (40%), Gaps = 46/269 (17%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFR----RMVACEYTEPSEITILAVF 91
A +F+ P W ++ Y+ AL LFR M Y + A
Sbjct: 52 AHQVFDRRP----TPWHALLKAYSHGPFPQEALNLFRDAHRNMADDTYAFMFSLRACAGL 107
Query: 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER- 150
W +HG ++GF FH +V LI+TY CGC+ A F+++ V+
Sbjct: 108 AWPWTGAQ------LHGLVIRKGFE-FHAYVHTSLINTYVVCGCLVDARMAFDEMPVKNV 160
Query: 151 ----------------------------KNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
+N+VSWT +I G+ EAV RM
Sbjct: 161 VSWNVMITGFAGRGEIEYARLLFERMPSRNVVSWTGLIDGYTRSCHSVEAVALLRRMMAE 220
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
+ P +T L+V+ A S G + G + E+ ++ DI+ LID+ + G ++
Sbjct: 221 GISPTEITVLAVVPAISDIGRILMG-ETLHGYCEKNGLVLDIRVGNSLIDLYAKIGSIQS 279
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ KV G+ + N+V W +++ + HG
Sbjct: 280 SLKVFHGMLNR-RNLVSWTSIISGFAMHG 307
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/323 (56%), Positives = 243/323 (75%), Gaps = 4/323 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D F+E+P +N V+WNV+ITG WGE+EYAR LFE MPCRNVVSW+G+IDGYTR
Sbjct: 140 LADSRMAFEEMPVKNAVSWNVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRA 199
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R A+ALFRRM+A E PSEIT+LAV PA+ G + + +HGY EK G + +
Sbjct: 200 CRPVEAVALFRRMMA-EGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGL-VWDVR 257
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LID YAK G I ++L++F+++ ++R+NLVSWTSIISGFAMHG+ +AVE F M++
Sbjct: 258 VGNSLIDLYAKIGSIQNSLRVFDEM-LDRRNLVSWTSIISGFAMHGLSVKAVELFADMRR 316
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++PNR+TFLSVL+ACSHGGLVE+G+ FF M+ E + PD+KH+GC+IDMLGRAGRL
Sbjct: 317 AGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLR 376
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AE++ P E+ N VWRTLLG CS +G VEMGER +KIL +ER +GGD+V++ N+L
Sbjct: 377 EAEQIIRDFPVEV-NATVWRTLLGCCSKYGEVEMGERTMKKILALEREFGGDFVVLSNML 435
Query: 302 AGVWRYGDAERLRRVVDERNALK 324
+ R+ DAE +R++VD+RN++K
Sbjct: 436 TELRRFSDAEIVRKLVDQRNSVK 458
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 123/330 (37%), Positives = 197/330 (59%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ K+F + RN+VT N MI K ++ AR +F+++P ++++SW+ +I GY++
Sbjct: 704 LQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQA 763
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
N + AL +FR+M + +P I I +V + G + + +H Y + A I
Sbjct: 764 NHFSDALEIFRQMQRAK-VKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTI- 821
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N LID Y KCG AL++F+++ + K+ +SW SII G A +G KE++ F+ M
Sbjct: 822 MENSLIDMYMKCGSAKEALQVFKEM--KEKDTLSWNSIIIGLANNGFEKESLNLFQAMLT 879
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+PN VTFL VL AC++ LVEEGL F+ M + P +KHYGC++D+LGRAG+LE
Sbjct: 880 EGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLE 939
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + + +P + + VVWR LLG+C+ HG+V + E VT+K+ E+E G+Y L+ N
Sbjct: 940 KALRFITEMPID-PDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSNAY 998
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ +A +R+ + + + K PG S V
Sbjct: 999 ASAHRWSEAMNVRQCMADTDVRKSPGCSAV 1028
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 142/279 (50%), Gaps = 38/279 (13%)
Query: 2 LKDGSKLFDELPERNLVT----WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDG 57
L +G ++ + + + L++ N +I G L YARS+F+EM ++VVSW +I G
Sbjct: 568 LNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICG 627
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGD-------VRNCQ------ 104
Y++ NR LALF+ M E + ++T++ V A + GD VR +
Sbjct: 628 YSQCNRFKDILALFKLM-QNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEV 686
Query: 105 -------LIHGYG--------EKRGFN--AFHIHVSNCLIDTYAKCGCIFSALKLFEDIS 147
L+ +G EK FN +I N +I YAK I SA K+F+ I
Sbjct: 687 DVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIP 746
Query: 148 VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEG 207
+K+L+SW+S+ISG++ +A+E F +MQ+ +KP+ + SV+++C+H G ++ G
Sbjct: 747 --KKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLG 804
Query: 208 LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
K+ + V + D LIDM + G ++A +V
Sbjct: 805 -KWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQV 842
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 113/269 (42%), Gaps = 46/269 (17%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFR--RMVACEYTEPSEITILAVFPA 93
A +F+ P W ++ Y+ AL LFR R A + T + A
Sbjct: 47 AHQVFDRRP----TPWHALLKAYSHGPHPQDALQLFRHARWHAADDTYAFTFALKACAGL 102
Query: 94 IWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER--- 150
W R C +HG ++GF F +V L++ Y CGC+ + FE++ V+
Sbjct: 103 GWP----RCCMQLHGLVVRKGFE-FQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVS 157
Query: 151 --------------------------KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
+N+VSW+ +I G+ EAV F RM +
Sbjct: 158 WNVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGI 217
Query: 185 KPNRVTFLSVLNACSHGG--LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
P+ +T L+V+ A S+ G L+ E L + E+ ++ D++ LID+ + G ++
Sbjct: 218 SPSEITVLAVVPALSNVGKILIGEALHGY---CEKEGLVWDVRVGNSLIDLYAKIGSIQN 274
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ +V + N+V W +++ + HG
Sbjct: 275 SLRVFDEMLDR-RNLVSWTSIISGFAMHG 302
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 86/206 (41%), Gaps = 11/206 (5%)
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYA--KCGCIFSALKLFEDISVERKNLVSWTSIISGF 163
+H Y G H +S L +YA + +F A K+F+ I E W +I G
Sbjct: 472 LHAYYIVSGLYNCHYAMSKVL-RSYAILQPDLVF-AHKVFDQI--EAPTTFLWNILIRGL 527
Query: 164 AMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD 223
A +A+ +++ Q + P+ +TF +L AC+ + EG + + + + +L D
Sbjct: 528 AQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNH-ITKLGLLSD 586
Query: 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
I LI + G L A V + + +VV W +L+ C + + +
Sbjct: 587 IFVSNSLIHLYAACGNLCYARSVFDEMV--VKDVVSWNSLI--CGYSQCNRFKDILALFK 642
Query: 284 LEMERGYGGDYVLMYNILAGVWRYGD 309
L G D V M +++ R GD
Sbjct: 643 LMQNEGVKADKVTMIKVVSACTRLGD 668
>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 176/320 (55%), Positives = 241/320 (75%), Gaps = 4/320 (1%)
Query: 12 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALF 71
+P +N+V+WNV+ITG WGE+EYAR LF++MPCRNVVSWTG+IDGYTR A+ALF
Sbjct: 1 MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60
Query: 72 RRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYA 131
R M+A + PSEIT+LAV PAI G + +++HGY K+G + V N LID YA
Sbjct: 61 RHMMAGGIS-PSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMS-DARVGNSLIDLYA 118
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191
K G + ++LK+F+++ ++R+NLVSWTSIISGFAMHG+ EA+E F M++ ++PNR+TF
Sbjct: 119 KIGSVQNSLKVFDEM-LDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITF 177
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
LSV+NACSHGGLVE+GL FF MV E + P+IKH+GC+IDMLGRAGRL +AE++ G+P
Sbjct: 178 LSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLP 237
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
E+ NV+VWR LLG CS +G VEMG+R + I ++ER GGD+ ++ N+L + R+ DAE
Sbjct: 238 VEV-NVIVWRILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAE 296
Query: 312 RLRRVVDERNALKFPGRSLV 331
+ R+++DER +K PG +LV
Sbjct: 297 QARKLLDERKIVKVPGLALV 316
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 193/330 (58%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ K+F ++ ++N VT N MI K G L A+ +F+++P ++++SW+ +I Y++
Sbjct: 562 LQSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQA 621
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ + +L LFR+M + +P + I +V A G + + IH Y + I
Sbjct: 622 SHFSDSLELFRQMQRAK-VKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTI- 679
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N LID +AKCGC+ AL++F ++ E K+ +SW SII G A +G EA+ F M
Sbjct: 680 MENSLIDMFAKCGCMQEALQVFTEM--EEKDTLSWNSIILGLANNGFEDEALNIFYSMLT 737
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+PN VTFL VL AC++ LV+EGL F++M + P +KHYGC++ +L RAG+LE
Sbjct: 738 EGPRPNEVTFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQMKHYGCVVGILSRAGQLE 797
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A+ + +P + VVWR LLGAC HGNV + E T+K+ E++ GDY+L+ NI
Sbjct: 798 KAKNFINEMPLA-PDPVVWRILLGACKTHGNVAVAEVATKKLSELDPSNSGDYMLLSNIY 856
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ DA +R+ + + K P S+V
Sbjct: 857 ASADRWSDALNVRQWMADTAVRKSPACSVV 886
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 131/273 (47%), Gaps = 34/273 (12%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I G+L ARS+F+EM ++VVSW +I GY++ NR LALF M A E
Sbjct: 449 NSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFELMQA-EEV 507
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+ ++T++ V A GD + Y E R +++ N LID Y + G + SA
Sbjct: 508 QADKVTMVKVISACTHLGDWSMADCMVRYIE-RNHIEVDVYLGNTLIDYYCRIGQLQSAE 566
Query: 141 KLFEDI-----------------------------SVERKNLVSWTSIISGFAMHGMGKE 171
K+F + + K+L+SW+S+I ++ +
Sbjct: 567 KVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSD 626
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLI 231
++E F +MQ+ +KP+ V SVL+AC+H G ++ G K+ V + D LI
Sbjct: 627 SLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLG-KWIHDYVRRNNIKTDTIMENSLI 685
Query: 232 DMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
DM + G +++A +V + + E + + W +++
Sbjct: 686 DMFAKCGCMQEALQVFTEM--EEKDTLSWNSII 716
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 126/259 (48%), Gaps = 13/259 (5%)
Query: 28 VKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITI 87
++ +L +A +FE++ W ++ G + + A+ +++ + +P +T
Sbjct: 355 LQQSDLVFAHKVFEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQE-KGMKPDNMTF 413
Query: 88 LAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS 147
V A + + + +H + K GF I VSN LI YA CG + A +F+++
Sbjct: 414 PFVLKACAKTYAPKEGEQMHSHVIKLGF-LLDIFVSNSLIHLYAACGDLVCARSIFDEML 472
Query: 148 VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEG 207
V K++VSW S+I G++ KE + FE MQ ++ ++VT + V++AC+H G
Sbjct: 473 V--KDVVSWNSLIGGYSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLG----D 526
Query: 208 LKFFDKMV---EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
D MV E + D+ LID R G+L+ AEKV S + + N V ++
Sbjct: 527 WSMADCMVRYIERNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDK--NTVTLNAMI 584
Query: 265 GACSFHGNVEMGERVTRKI 283
A + GN+ +++ +I
Sbjct: 585 HAYAKGGNLVSAKKIFDQI 603
>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 177/324 (54%), Positives = 240/324 (74%), Gaps = 4/324 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + K+FDE+P +N+V+WNVMITG WGE+EYAR LF++MPCRNVVSWTG+IDGYTR
Sbjct: 530 LVEARKVFDEMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRA 589
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL L R M+A + PSEIT+LAV PAI G + ++++GY EK+G +
Sbjct: 590 CLYAEALTLLRHMMAGGIS-PSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMS-DAR 647
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LID YAK G + ++LK+F+++ ++R+NLVSWTSIISGFAMHG+ EA+E F M++
Sbjct: 648 VGNSLIDLYAKIGSVQNSLKVFDEM-LDRRNLVSWTSIISGFAMHGLSVEALELFAEMRR 706
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPNR+TFLSV+NACSHGGLVE+GL FF MV E + P+IKH+GC+IDMLGRAGRL
Sbjct: 707 AGIKPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLC 766
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AE++ G+P E+ NV VWR LLG CS +G V MGER + I ++ER GGD+ ++ N+L
Sbjct: 767 EAEQIIEGLPMEV-NVTVWRILLGCCSKYGEVAMGERAIKMISDLERESGGDFAVLSNVL 825
Query: 302 AGVWRYGDAERLRRVVDERNALKF 325
+ R+ DAE+ R+++D+R +K
Sbjct: 826 TELGRFSDAEQARKLLDQRKIVKL 849
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 124/314 (39%), Positives = 188/314 (59%), Gaps = 5/314 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ K+F ++ ++N VT N MIT K G L A+ +F+++P ++++SW+ +I Y++
Sbjct: 1092 LQSAEKVFSQMKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQA 1151
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ + +L LFR+M + +P + I +V A G + + IH Y + A I
Sbjct: 1152 SHFSDSLELFRQMQRAK-VKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKADTI- 1209
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N LID +AKCGC+ AL++F D+ E K+ +SW SII G A +G EA++ F M
Sbjct: 1210 MENSLIDMFAKCGCVQEALQVFTDM--EEKDTLSWNSIILGLANNGFEDEALDIFHSMLT 1267
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+PN VTFL VL AC++ LVEEGL F++M + P +KHYGC++D+L RAG+LE
Sbjct: 1268 EGPRPNEVTFLGVLIACANRQLVEEGLDHFERMKSVHNLEPQMKHYGCVVDILSRAGQLE 1327
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A S +P + VVWR LLGAC HGNV + E T+K+ E++ G D +L+ NI
Sbjct: 1328 KAVSFISEMPLA-PDPVVWRILLGACRTHGNVAVAEMATKKLSELDPGNSADSMLLSNIY 1386
Query: 302 AGVWRYGDAERLRR 315
A R+ DA +RR
Sbjct: 1387 ASADRWSDAMNVRR 1400
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 128/273 (46%), Gaps = 34/273 (12%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I G L ARS+F EM ++VVSW +I GY++ NR L LF+ M A E
Sbjct: 979 NSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIGGYSQHNRLKEVLTLFKLMQA-EEV 1037
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+ ++T++ V A GD + Y E +++ N LID Y + G + SA
Sbjct: 1038 QADKVTMVKVISACTHLGDWSMADCMVRYIEHNHIEV-DVYLGNTLIDYYCRIGQLQSAE 1096
Query: 141 KLFEDI-----------------------------SVERKNLVSWTSIISGFAMHGMGKE 171
K+F + + K+L+SW+S+I ++ +
Sbjct: 1097 KVFSQMKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSD 1156
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLI 231
++E F +MQ+ +KP+ V SVL+AC+H G ++ G K+ V + D LI
Sbjct: 1157 SLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLG-KWIHDYVRRNNIKADTIMENSLI 1215
Query: 232 DMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
DM + G +++A +V + + E + + W +++
Sbjct: 1216 DMFAKCGCVQEALQVFTDM--EEKDTLSWNSII 1246
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 123/256 (48%), Gaps = 13/256 (5%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
+L A +F+++ W ++ G + + A+ +++ + +P +T V
Sbjct: 888 SDLVSAHKVFKQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQE-KGMKPDNLTFPFV 946
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A + + + +H + K GF I VSN LI YA CG + A +F ++ V
Sbjct: 947 LKACAKTCAPKEGEQMHNHVIKLGF-LLDIFVSNSLIYLYAACGALACARSVFNEMLV-- 1003
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
K++VSW S+I G++ H KE + F+ MQ ++ ++VT + V++AC+H G
Sbjct: 1004 KDVVSWNSLIGGYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLG----DWSM 1059
Query: 211 FDKMV---EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC 267
D MV E + D+ LID R G+L+ AEKV S + + N V ++ A
Sbjct: 1060 ADCMVRYIEHNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDK--NTVTLNAMITAY 1117
Query: 268 SFHGNVEMGERVTRKI 283
+ GN+ +++ +I
Sbjct: 1118 AKGGNLVSAKKIFDQI 1133
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 109/265 (41%), Gaps = 38/265 (14%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW 95
A +F++ P W + Y+ AL LF+ A ++ V A
Sbjct: 437 ALKVFDQSP----APWRAFLKAYSHGPFPLEALHLFKH--ARQHLADDTFVFTFVLKACA 490
Query: 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER----- 150
G R +H ++GF FH +V LI+ Y C+ A K+F+++ V+
Sbjct: 491 GLGWHRAGAQLHALVVQKGFE-FHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWN 549
Query: 151 ------------------------KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+N+VSWT +I G+ + EA+ M + P
Sbjct: 550 VMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISP 609
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +T L+V+ A S+ G + G + + E+ ++ D + LID+ + G ++ + KV
Sbjct: 610 SEITVLAVIPAISNLGGILMG-EMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKV 668
Query: 247 ASGIPSEITNVVVWRTLLGACSFHG 271
+ + N+V W +++ + HG
Sbjct: 669 FDEM-LDRRNLVSWTSIISGFAMHG 692
>gi|414879991|tpg|DAA57122.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 868
Score = 360 bits (923), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 177/324 (54%), Positives = 240/324 (74%), Gaps = 4/324 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + K+FDE+P +N+V+WNVMITG WGE+EYAR LF++MPCRNVVSWTG+IDGYTR
Sbjct: 530 LVEARKVFDEMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRA 589
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL L R M+A + PSEIT+LAV PAI G + ++++GY EK+G +
Sbjct: 590 CLYAEALTLLRHMMAGGIS-PSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMS-DAR 647
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LID YAK G + ++LK+F+++ ++R+NLVSWTSIISGFAMHG+ EA+E F M++
Sbjct: 648 VGNSLIDLYAKIGSVQNSLKVFDEM-LDRRNLVSWTSIISGFAMHGLSVEALELFAEMRR 706
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPNR+TFLSV+NACSHGGLVE+GL FF MV E + P+IKH+GC+IDMLGRAGRL
Sbjct: 707 AGIKPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLC 766
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AE++ G+P E+ NV VWR LLG CS +G V MGER + I ++ER GGD+ ++ N+L
Sbjct: 767 EAEQIIEGLPMEV-NVTVWRILLGCCSKYGEVAMGERAIKMISDLERESGGDFAVLSNVL 825
Query: 302 AGVWRYGDAERLRRVVDERNALKF 325
+ R+ DAE+ R+++D+R +K
Sbjct: 826 TELGRFSDAEQARKLLDQRKIVKL 849
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 109/265 (41%), Gaps = 38/265 (14%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW 95
A +F++ P W + Y+ AL LF+ A ++ V A
Sbjct: 437 ALKVFDQSP----APWRAFLKAYSHGPFPLEALHLFKH--ARQHLADDTFVFTFVLKACA 490
Query: 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER----- 150
G R +H ++GF FH +V LI+ Y C+ A K+F+++ V+
Sbjct: 491 GLGWHRAGAQLHALVVQKGFE-FHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWN 549
Query: 151 ------------------------KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+N+VSWT +I G+ + EA+ M + P
Sbjct: 550 VMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISP 609
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +T L+V+ A S+ G + G + + E+ ++ D + LID+ + G ++ + KV
Sbjct: 610 SEITVLAVIPAISNLGGILMG-EMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKV 668
Query: 247 ASGIPSEITNVVVWRTLLGACSFHG 271
+ + N+V W +++ + HG
Sbjct: 669 FDEM-LDRRNLVSWTSIISGFAMHG 692
>gi|414866864|tpg|DAA45421.1| TPA: diphthine synthase [Zea mays]
Length = 897
Score = 323 bits (827), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 162/297 (54%), Positives = 217/297 (73%), Gaps = 4/297 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + K+FDE+P +N+V+WNVMITG W E+EYAR LF++MPCRNVVSWTG+IDGYT
Sbjct: 250 LVEARKVFDEMPVKNVVSWNVMITGFAGWDEVEYARLLFDQMPCRNVVSWTGLIDGYTHA 309
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL L R M+A + PSEI +LAV PAI G + ++++GY EK+G + +
Sbjct: 310 CLYAEALTLLRHMMAGGIS-PSEIIVLAVIPAISNLGGIVMGEMLNGYCEKKGIMS-DVR 367
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LID YAK G + ++LK+F+++ ++R+NLVSWTSIISGFAMHG+ EA+E F M++
Sbjct: 368 VGNSLIDLYAKIGSVQNSLKVFDEM-LDRRNLVSWTSIISGFAMHGLSVEALELFAEMRR 426
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPNR+TFLSV+N CSHGGLV++GL FF MV E + P+IKH+G +IDMLGRAGRL
Sbjct: 427 AGIKPNRITFLSVINVCSHGGLVQQGLAFFKSMVYEYNIDPEIKHFGYIIDMLGRAGRLC 486
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMY 298
+AE++ G+P E+ NV VWR LLG S +G VEMGER + I ++ER GGD++ Y
Sbjct: 487 EAEQIIEGLPMEV-NVTVWRILLGCFSKYGEVEMGERAIKMISDLERESGGDFLQGY 542
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 87/195 (44%), Gaps = 32/195 (16%)
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER--------------- 150
+H ++GF FH +V LI+ Y C+ A K+F+++ V+
Sbjct: 221 LHALVVQKGFE-FHAYVHIALINVYVMSRCLVEARKVFDEMPVKNVVSWNVMITGFAGWD 279
Query: 151 --------------KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLN 196
+N+VSWT +I G+ + EA+ M + P+ + L+V+
Sbjct: 280 EVEYARLLFDQMPCRNVVSWTGLIDGYTHACLYAEALTLLRHMMAGGISPSEIIVLAVIP 339
Query: 197 ACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256
A S+ G + G + + E+ ++ D++ LID+ + G ++ + KV + + N
Sbjct: 340 AISNLGGIVMG-EMLNGYCEKKGIMSDVRVGNSLIDLYAKIGSVQNSLKVFDEM-LDRRN 397
Query: 257 VVVWRTLLGACSFHG 271
+V W +++ + HG
Sbjct: 398 LVSWTSIISGFAMHG 412
>gi|414866863|tpg|DAA45420.1| TPA: hypothetical protein ZEAMMB73_079127 [Zea mays]
Length = 716
Score = 323 bits (827), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 162/297 (54%), Positives = 217/297 (73%), Gaps = 4/297 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + K+FDE+P +N+V+WNVMITG W E+EYAR LF++MPCRNVVSWTG+IDGYT
Sbjct: 250 LVEARKVFDEMPVKNVVSWNVMITGFAGWDEVEYARLLFDQMPCRNVVSWTGLIDGYTHA 309
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL L R M+A + PSEI +LAV PAI G + ++++GY EK+G + +
Sbjct: 310 CLYAEALTLLRHMMAGGIS-PSEIIVLAVIPAISNLGGIVMGEMLNGYCEKKGIMS-DVR 367
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LID YAK G + ++LK+F+++ ++R+NLVSWTSIISGFAMHG+ EA+E F M++
Sbjct: 368 VGNSLIDLYAKIGSVQNSLKVFDEM-LDRRNLVSWTSIISGFAMHGLSVEALELFAEMRR 426
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPNR+TFLSV+N CSHGGLV++GL FF MV E + P+IKH+G +IDMLGRAGRL
Sbjct: 427 AGIKPNRITFLSVINVCSHGGLVQQGLAFFKSMVYEYNIDPEIKHFGYIIDMLGRAGRLC 486
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMY 298
+AE++ G+P E+ NV VWR LLG S +G VEMGER + I ++ER GGD++ Y
Sbjct: 487 EAEQIIEGLPMEV-NVTVWRILLGCFSKYGEVEMGERAIKMISDLERESGGDFLQGY 542
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 87/195 (44%), Gaps = 32/195 (16%)
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER--------------- 150
+H ++GF FH +V LI+ Y C+ A K+F+++ V+
Sbjct: 221 LHALVVQKGFE-FHAYVHIALINVYVMSRCLVEARKVFDEMPVKNVVSWNVMITGFAGWD 279
Query: 151 --------------KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLN 196
+N+VSWT +I G+ + EA+ M + P+ + L+V+
Sbjct: 280 EVEYARLLFDQMPCRNVVSWTGLIDGYTHACLYAEALTLLRHMMAGGISPSEIIVLAVIP 339
Query: 197 ACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256
A S+ G + G + + E+ ++ D++ LID+ + G ++ + KV + + N
Sbjct: 340 AISNLGGIVMG-EMLNGYCEKKGIMSDVRVGNSLIDLYAKIGSVQNSLKVFDEM-LDRRN 397
Query: 257 VVVWRTLLGACSFHG 271
+V W +++ + HG
Sbjct: 398 LVSWTSIISGFAMHG 412
>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 519
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 143/330 (43%), Positives = 204/330 (61%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
LK KLF+E+PER+LV+WNVMITG VK GE+E AR LF+E P ++VVSW +I GY
Sbjct: 190 LKVARKLFNEMPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVC 249
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
S AL LF M P E+T+L++ A GD+ N + +H +
Sbjct: 250 GLSKQALELFNEMCRAGVF-PDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLSTL 308
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N LID YAKCG I +L +F S+ K+++SW S+I G A+HG GKE++ F+ MQ+
Sbjct: 309 LGNALIDMYAKCGNIKESLDVF--WSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQR 366
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ PN +TF+ VL ACSH G ++EG K+FD M E ++ P+I+H GC++DMLGRAG L+
Sbjct: 367 TKICPNEITFVGVLVACSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLK 426
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A K + E N ++WRTLL AC HG+VE+ + K+ M + + GDYVLM N+
Sbjct: 427 EAAKFIDSMKIE-PNAIIWRTLLAACKVHGDVELAKVANEKLFSMRKDHSGDYVLMSNLY 485
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + AE++R+++D+ K G S V
Sbjct: 486 ASRGEWDGAEKVRKLMDDSGVTKIRGSSFV 515
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 122/257 (47%), Gaps = 45/257 (17%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
N V N ++ K G+L A SLF++ +VV+W+ +I GY R G L + R++
Sbjct: 142 NAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSLIAGYAR----RGDLKVARKL- 196
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
+ E E +++ W N +I Y K G
Sbjct: 197 ---FNEMPERDLVS-----W----------------------------NVMITGYVKQGE 220
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ SA LF++ V K++VSW ++I+G+ + G+ K+A+E F M + + P+ VT LS+L
Sbjct: 221 MESARMLFDEAPV--KDVVSWNAMIAGYVVCGLSKQALELFNEMCRAGVFPDEVTLLSLL 278
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+AC+ G +E G K K++E LIDM + G ++++ V I +
Sbjct: 279 SACADLGDLENGKKVHAKVMEISMGKLSTLLGNALIDMYAKCGNIKESLDVFWSITDK-- 336
Query: 256 NVVVWRTLLGACSFHGN 272
+V+ W +++ + HG+
Sbjct: 337 DVISWNSVIVGMALHGH 353
>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 139/330 (42%), Positives = 214/330 (64%), Gaps = 6/330 (1%)
Query: 4 DGSKLFD--ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
D K+FD + ++ WN M+ G K G+L AR LFE MP RNV+SWT +I GY +
Sbjct: 133 DARKMFDGMSMSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQA 192
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
NR + A+ALFRRM E EP EI +L A + G + + I Y ++ G +I
Sbjct: 193 NRPHDAIALFRRM-QLENVEPDEIAMLVALTACARLGALELGEWIRHYIDRLGLLTTNIP 251
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
++N LID YAK G I SAL++FE+++ K +++WT++I+G A+HG+G EA+E F RM++
Sbjct: 252 LNNALIDMYAKSGDIKSALQVFENMN--HKTIITWTTMIAGLALHGLGTEALEMFSRMER 309
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPN +TF+++L+ACSH GLV+ G +F++M+ + P I+HYGC+ID+LGRAG L+
Sbjct: 310 ARVKPNDITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHLK 369
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A+ + + +P E N V+W +LL AC+ HG+ E+GE + +LE+E G+Y L+ NI
Sbjct: 370 EAQTLLAQMPFE-PNAVIWGSLLAACNTHGDPELGELALQHLLELEPDNSGNYALLSNIY 428
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ ++ +R+V+ + K PG SL+
Sbjct: 429 ASRGRWNESRVVRKVMWDAGVKKMPGGSLI 458
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/314 (19%), Positives = 124/314 (39%), Gaps = 46/314 (14%)
Query: 15 RNLVTWNVMITGLV----KWGELEYARSLFEEMP-CRNVVSWTGIIDGYTRMNRSNGALA 69
R L T N++++ + G YA SLF + ++ + II + A
Sbjct: 4 RALDTDNLLLSRFIHACSSLGFYSYAYSLFTSITHAPDIYLYNNIIKALSSSPTHPKASI 63
Query: 70 LFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDT 129
+ P + A+ + ++ + +H + G ++ +HV +
Sbjct: 64 FLYNNIQLAGLRPDSYSFPFALKAVTRFSSIQTGRQLHSQSIRFGLHS-DLHVLTAFVQM 122
Query: 130 YAK--CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG-------------------- 167
Y+ GCI A K+F+ +S+ ++ W ++++G+A HG
Sbjct: 123 YSSFGSGCICDARKMFDGMSMSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNVISW 182
Query: 168 -----------MGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVE 216
+A+ F RMQ ++P+ + L L AC+ G +E G ++ ++
Sbjct: 183 TALITGYAQANRPHDAIALFRRMQLENVEPDEIAMLVALTACARLGALELG-EWIRHYID 241
Query: 217 ECEVL-PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEM 275
+L +I LIDM ++G ++ A +V + + ++ W T++ + HG +
Sbjct: 242 RLGLLTTNIPLNNALIDMYAKSGDIKSALQVFENMNHK--TIITWTTMIAGLALHG---L 296
Query: 276 GERVTRKILEMERG 289
G MER
Sbjct: 297 GTEALEMFSRMERA 310
>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
Length = 506
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 207/328 (63%), Gaps = 5/328 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ D +F E+ R++V WNVMI G VK G+L +AR LF+ MP RNVVSWT +I GY +M
Sbjct: 130 VADARSVFHEMAVRDVVAWNVMIAGYVKAGDLAHARELFDAMPERNVVSWTTVIGGYAQM 189
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R A+ +FRRM E EP + +L+V A G V + +H + +RG I
Sbjct: 190 RRPEEAVEVFRRM-QVEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLRQ-EIP 247
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N +ID Y KCGCI A+++FE +E K++V+WT++I+GFA+HG+G +AVE F RM++
Sbjct: 248 LMNSIIDMYMKCGCIEKAVEVFE--GMEEKSVVTWTTLIAGFALHGLGLQAVEMFRRMER 305
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ PN VTFL++L+ACSH GL + G +F+ MV + + P ++HYGC++D+LGRAG L+
Sbjct: 306 ENMAPNDVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPQVEHYGCMVDLLGRAGCLK 365
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A+ + +P + N +W LL A HG+ ++GE ++E+E G+Y+L+ NI
Sbjct: 366 EAQDLVKDMPLK-ANAAIWGALLAASRTHGDADLGEEALVHLIELEPSNSGNYILLSNIF 424
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRS 329
A R+ D +LR+ + ER PG S
Sbjct: 425 AEQERWDDVSKLRKAMKERGLRNVPGAS 452
>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 273 bits (698), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 137/325 (42%), Positives = 204/325 (62%), Gaps = 4/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFDE+P ++LV+WNVMITG K GE+E AR LF+E+P R+VV+W +I GY +
Sbjct: 165 QLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQ 224
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL +F M + P E+T+L++ A GD+ Q IH + GF + + N L
Sbjct: 225 ALEMFEEMRSVGEL-PDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNAL 283
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YAKCG I AL++F+ + K++ +W S++ G A HG ++++ F M+K+ ++P
Sbjct: 284 IDMYAKCGSIVRALEVFQ--GMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRP 341
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +TF+ VL ACSH G VEEG ++FD M +E + P+I+HYGC++D+LGRAG L +A
Sbjct: 342 DEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDF 401
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ E N +VWRTLLGAC HGNVE+G R ++L+M GDYVL+ NI A
Sbjct: 402 IDTMKIE-PNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRGE 460
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ E++R+++D+ K G SL+
Sbjct: 461 WDGVEKVRKLMDDSGVRKEAGCSLI 485
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 119/261 (45%), Gaps = 45/261 (17%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E N N +I G+L AR+LF+ R+VV+W+ + GY R A LF
Sbjct: 110 ESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDE 169
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M + W N +I YAK
Sbjct: 170 MPVKDLVS-------------W----------------------------NVMITGYAKR 188
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + SA KLF++ V ++++V+W ++I+G+ + G ++A+E FE M+ V P+ VT LS
Sbjct: 189 GEMESARKLFDE--VPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLS 246
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L+AC+ G ++ G + + E + LIDM + G + +A +V G+ +
Sbjct: 247 LLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREK 306
Query: 254 ITNVVVWRTLLGACSFHGNVE 274
+V W ++LG +FHG+ E
Sbjct: 307 --DVSTWNSVLGGLAFHGHAE 325
>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Vitis vinifera]
Length = 550
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 137/325 (42%), Positives = 204/325 (62%), Gaps = 4/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFDE+P ++LV+WNVMITG K GE+E AR LF+E+P R+VV+W +I GY +
Sbjct: 200 QLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQ 259
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL +F M + P E+T+L++ A GD+ Q IH + GF + + N L
Sbjct: 260 ALEMFEEMRSVGEL-PDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNAL 318
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YAKCG I AL++F+ + K++ +W S++ G A HG ++++ F M+K+ ++P
Sbjct: 319 IDMYAKCGSIVRALEVFQ--GMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRP 376
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +TF+ VL ACSH G VEEG ++FD M +E + P+I+HYGC++D+LGRAG L +A
Sbjct: 377 DEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDF 436
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ E N +VWRTLLGAC HGNVE+G R ++L+M GDYVL+ NI A
Sbjct: 437 IDTMKIE-PNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRGE 495
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ E++R+++D+ K G SL+
Sbjct: 496 WDGVEKVRKLMDDSGVRKEAGCSLI 520
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 119/261 (45%), Gaps = 45/261 (17%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E N N +I G+L AR+LF+ R+VV+W+ + GY R A LF
Sbjct: 145 ESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDE 204
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M + W N +I YAK
Sbjct: 205 MPVKDLVS-------------W----------------------------NVMITGYAKR 223
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + SA KLF++ V ++++V+W ++I+G+ + G ++A+E FE M+ V P+ VT LS
Sbjct: 224 GEMESARKLFDE--VPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLS 281
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L+AC+ G ++ G + + E + LIDM + G + +A +V G+ +
Sbjct: 282 LLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREK 341
Query: 254 ITNVVVWRTLLGACSFHGNVE 274
+V W ++LG +FHG+ E
Sbjct: 342 --DVSTWNSVLGGLAFHGHAE 360
>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 136/330 (41%), Positives = 213/330 (64%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+K G +LFD +P RNL++WNVM+ G K GELE AR +F EMP ++ VSW+ +I G+
Sbjct: 188 MKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHN 247
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
A + FR + + P+E ++ V A Q G + +++HG+ EK G A+ +
Sbjct: 248 GYFEEAFSFFRELQR-KGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGL-AWIVS 305
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V+N L+DTY+KCG + A +FE I ER N+VSWTS+++ AMHG G+EA+ F +M++
Sbjct: 306 VNNALLDTYSKCGNVLMAQLVFERIMNER-NIVSWTSMMAALAMHGHGEEAIGIFHKMEE 364
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++P+ + F+S+L ACSH GLVE+G ++FDKM + P I+HYGC++D+ GRAG+L+
Sbjct: 365 SGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQ 424
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + +P T ++WRTLLGACS HG+V++ E+V ++ E++ D+VL+ N
Sbjct: 425 KAYEFVCQMPIPCT-AIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLLSNAY 483
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ DA +RR + E+ K PG S++
Sbjct: 484 AVAGKWKDAASVRRSMTEQRITKTPGWSMI 513
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 134/330 (40%), Positives = 213/330 (64%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + +LFD + R++ WN M+ G K G+++ AR LFE MP RNV+SWT +I GY +M
Sbjct: 190 VSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQM 249
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+R N A+ +FRRM E EP EI +LA A G + + IH Y +K G + +
Sbjct: 250 DRPNEAITMFRRM-QLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKI-VP 307
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
++N LID YAKCG I AL++F+++ E K++++WTS+I G A+HG+G+EA+E F M++
Sbjct: 308 LNNALIDMYAKCGKIEKALEVFKNM--EHKSVITWTSMIDGLALHGLGREALEMFSCMER 365
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPN +TF+++L+AC H GLVE G +F M + + P I+HYGC+ID+LGRAG L+
Sbjct: 366 NRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQ 425
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A+++ G+P E N +W +LL A HG+ E+G++ + ++++E G+Y L+ NI
Sbjct: 426 EAQELVRGMPFE-ANAPIWGSLLAAARIHGDAELGKQALQHLIKVEPHNSGNYTLLSNIY 484
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ +A +R+V+ + K PG S +
Sbjct: 485 ATQSKWNEAGMVRKVMRDTGVKKMPGGSCI 514
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 139/310 (44%), Gaps = 55/310 (17%)
Query: 15 RNLVTWNVMITGLVK----WGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALAL 70
R L N++++ ++ G Y+ S+F ++ + II + + A+ L
Sbjct: 67 RGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPDIYLYNTIIKALSNPELATEAILL 126
Query: 71 FRRMVACE-----YTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
+ R++A + Y+ P + + AI G +CQ I G G IHV
Sbjct: 127 YNRILASDLRFDTYSLPFVLKAVVRLLAI-HVGRQIHCQAI-GTGLVSD-----IHVVTA 179
Query: 126 LIDTYAKCGCIFSALKLFEDIS-----------------------------VERKNLVSW 156
LI Y+ CGC+ A +LF+ + + +N++SW
Sbjct: 180 LIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISW 239
Query: 157 TSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVE 216
T++I+G+A EA+ F RMQ ++P+ + L+ L+AC+H G +E G ++ ++
Sbjct: 240 TAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELG-EWIHNYID 298
Query: 217 ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMG 276
+ + + LIDM + G++E+A +V + E +V+ W +++ + HG
Sbjct: 299 KHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNM--EHKSVITWTSMIDGLALHG----- 351
Query: 277 ERVTRKILEM 286
+ R+ LEM
Sbjct: 352 --LGREALEM 359
>gi|413946997|gb|AFW79646.1| hypothetical protein ZEAMMB73_771020 [Zea mays]
Length = 505
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 137/330 (41%), Positives = 208/330 (63%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ D +FDE+ R++V WNVMI G VK G+ +AR LF+ MP RNVVSWT +I GY +M
Sbjct: 129 VADARSVFDEMAVRDVVAWNVMIAGYVKAGDQAHARELFDAMPERNVVSWTTVIGGYAQM 188
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R A+ +FRRM E E + +L+V A G V + +H + +RG I
Sbjct: 189 KRPEKAVEVFRRM-QVEGIEADGVALLSVLAACGDLGAVDLGEWVHRFVVRRGL-CQEIP 246
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N +ID Y KCGCI A+++FE +E K++V+WT++I+GFA+HG+G +AVE F RM++
Sbjct: 247 LMNSIIDMYMKCGCIEKAVEVFE--GMEEKSVVTWTTLIAGFALHGLGLQAVEMFCRMER 304
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ PN VTFL++L+ACSH GL + G +F+ MV + + P ++HYGC++D+LGRAG L+
Sbjct: 305 ENMAPNAVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPRVEHYGCMVDLLGRAGCLK 364
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A+ + +P + N +W LL A HG+ +GE+ ++E+E G+Y+L+ NI
Sbjct: 365 EAQDLVKNMPLK-ANAAIWGALLAAARTHGDAGLGEQALLHLIELEPNNSGNYILLSNIF 423
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+GD +LR+ + ER PG S +
Sbjct: 424 AEQERWGDVSKLRKAMRERGLRNVPGASSI 453
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 35/206 (16%)
Query: 112 KRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE---------------------- 149
+ G A HVS+ L+ Y CG + A +F++++V
Sbjct: 105 RTGHVASDAHVSSSLVQLYCTCGHVADARSVFDEMAVRDVVAWNVMIAGYVKAGDQAHAR 164
Query: 150 -------RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202
+N+VSWT++I G+A ++AVE F RMQ ++ + V LSVL AC G
Sbjct: 165 ELFDAMPERNVVSWTTVIGGYAQMKRPEKAVEVFRRMQVEGIEADGVALLSVLAACGDLG 224
Query: 203 LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
V+ G ++ + V + +I +IDM + G +E+A +V G+ E +VV W T
Sbjct: 225 AVDLG-EWVHRFVVRRGLCQEIPLMNSIIDMYMKCGCIEKAVEVFEGM--EEKSVVTWTT 281
Query: 263 LLGACSFHGNVEMGERVTRKILEMER 288
L+ + HG +G + MER
Sbjct: 282 LIAGFALHG---LGLQAVEMFCRMER 304
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 134/330 (40%), Positives = 213/330 (64%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + +LFD + R++ WN M+ G K G+++ AR LFE MP RNV+SWT +I GY +M
Sbjct: 190 VSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQM 249
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+R N A+ +FRRM E EP EI +LA A G + + IH Y +K G + +
Sbjct: 250 DRPNEAITMFRRM-QLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKI-VP 307
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
++N LID YAKCG I AL++F+++ E K++++WTS+I G A+HG+G+EA+E F M++
Sbjct: 308 LNNALIDMYAKCGKIEKALEVFKNM--EHKSVITWTSMIDGLALHGLGREALEMFSCMER 365
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPN +TF+++L+AC H GLVE G +F M + + P I+HYGC+ID+LGRAG L+
Sbjct: 366 NRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQ 425
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A+++ G+P E N +W +LL A HG+ E+G++ + ++++E G+Y L+ NI
Sbjct: 426 EAQELVRGMPFE-ANAPIWGSLLAAARIHGDAELGKQALQHLIKVEPHNSGNYTLLSNIY 484
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ +A +R+V+ + K PG S +
Sbjct: 485 ATQSKWNEAGMVRKVMRDTGVKKMPGGSCI 514
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 139/310 (44%), Gaps = 55/310 (17%)
Query: 15 RNLVTWNVMITGLVK----WGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALAL 70
R L N++++ ++ G Y+ S+F ++ + II + + A+ L
Sbjct: 67 RGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPDIYLYNTIIKALSNPELATEAILL 126
Query: 71 FRRMVACE-----YTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
+ R++A + Y+ P + + AI G +CQ I G G IHV
Sbjct: 127 YNRILASDLRFDTYSLPFVLKAVVRLLAI-HVGRQIHCQAI-GTGLVSD-----IHVVTA 179
Query: 126 LIDTYAKCGCIFSALKLFEDIS-----------------------------VERKNLVSW 156
LI Y+ CGC+ A +LF+ + + +N++SW
Sbjct: 180 LIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISW 239
Query: 157 TSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVE 216
T++I+G+A EA+ F RMQ ++P+ + L+ L+AC+H G +E G ++ ++
Sbjct: 240 TAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELG-EWIHNYID 298
Query: 217 ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMG 276
+ + + LIDM + G++E+A +V + E +V+ W +++ + HG
Sbjct: 299 KHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNM--EHKSVITWTSMIDGLALHG----- 351
Query: 277 ERVTRKILEM 286
+ R+ LEM
Sbjct: 352 --LGREALEM 359
>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 132/331 (39%), Positives = 214/331 (64%), Gaps = 5/331 (1%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
F+ D KLFD + +++ WN M+ G VK GEL+ AR +F EMP RNV+SWT +I GY +
Sbjct: 172 FVSDARKLFDFVGFKDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQ 231
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
NR + A+ LFR+M E EP EI +LAV A G + + IH Y EK G +
Sbjct: 232 TNRPHEAIELFRKM-QLEEVEPDEIAMLAVLSACADLGALELGEWIHNYIEKHGLCRI-V 289
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+ N LID YAK G I AL++FE++ ++K++++W+++I+ A+HG+G EA++ F RM+
Sbjct: 290 SLYNALIDMYAKSGNIRRALEVFENM--KQKSVITWSTVIAALALHGLGGEAIDMFLRME 347
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
K ++PN VTF+++L+ACSH G+V+ G +FD+M ++ P I+HYGC+ID+L RAG L
Sbjct: 348 KAKVRPNEVTFVAILSACSHVGMVDVGRYYFDQMQSMYKIEPKIEHYGCMIDLLARAGYL 407
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
++A+K+ +P E N ++W +LL A + H + E+ + + + ++E G G+YVL+ N
Sbjct: 408 QEAQKLLHDMPFE-ANAMIWGSLLAASNTHRDAELAQLALKHLAKLEPGNSGNYVLLSNT 466
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + ++ ++ +R+++ K PG S++
Sbjct: 467 YAALGKWNESGTVRKLMRNAGVKKAPGGSVI 497
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 140/314 (44%), Gaps = 38/314 (12%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
G L L + NL + I G YA S+F ++ + I ++ +
Sbjct: 45 GFMLHRALDQDNLFL-SQFIDACTSLGLSSYAFSIFSNKTHPDLRLYNTAIKALSKTSSP 103
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
A+ L+ R + + P +I +V A+ + V + IH + ++V+
Sbjct: 104 INAIWLYTR-IRIDGLRPDSYSIPSVLKAVVKLSAVEVGRQIHTQTVSSALD-MDVNVAT 161
Query: 125 CLIDTYAKCGCIFSALKLFE-----DISV------------------------ERKNLVS 155
LI Y+ CG + A KLF+ D+++ ++N++S
Sbjct: 162 SLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVIS 221
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215
WT++I+G+A EA+E F +MQ ++P+ + L+VL+AC+ G +E G ++ +
Sbjct: 222 WTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLSACADLGALELG-EWIHNYI 280
Query: 216 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEM 275
E+ + + Y LIDM ++G + +A +V + + +V+ W T++ A + HG +
Sbjct: 281 EKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQK--SVITWSTVIAALALHG---L 335
Query: 276 GERVTRKILEMERG 289
G L ME+
Sbjct: 336 GGEAIDMFLRMEKA 349
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 137/330 (41%), Positives = 208/330 (63%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+KD ++F +P RNL +WN+M+ G K GEL+ AR +F +MP ++ VSW+ +I G+
Sbjct: 188 VKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHN 247
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
N A A FR V E P+E+++ V A Q G +++HG+ EK GF I
Sbjct: 248 GNFNDAFAFFRE-VRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQI-IS 305
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V+N LIDTY+KCG + A +F+++ R++ VSWT++I+G AMHG G+EA+ F M++
Sbjct: 306 VNNALIDTYSKCGNLDMARLVFDNML--RRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEE 363
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KP+ +TF+S+L ACSH GLV+ G +F +MV + P I+HYGC++D+ GRAG+L+
Sbjct: 364 SNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQ 423
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
QA +P N +VWRTLLGACS HGN+ + +V R++ E++ GD+VL+ NI
Sbjct: 424 QAYDFVCQMPIS-PNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIY 482
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ D LRR + + K PG S++
Sbjct: 483 AVAGKWKDVAALRRSMTHQRLKKTPGWSMI 512
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/316 (22%), Positives = 116/316 (36%), Gaps = 67/316 (21%)
Query: 32 ELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVF 91
L YAR LF ++ +V + +I G + + + AL LF M P + +
Sbjct: 54 SLHYARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLL 113
Query: 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI----- 146
A + N +H G ++ H+ V LI YA+C C+ A K+F+++
Sbjct: 114 KAAANCRALTNGLQLHCLAVGYGLDS-HLFVGTTLISMYAECACLVFARKVFDEMIEPNI 172
Query: 147 ------------------------SVERKNLVSWTSIISGFAMHGMGKEAVENFERM--- 179
+ +NL SW +++G+ G + A E F +M
Sbjct: 173 VAWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLK 232
Query: 180 ----------------------------QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
++ ++PN V+ VL+AC+ G E G +
Sbjct: 233 DDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFG-RIL 291
Query: 212 DKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
VE+ L I LID + G L+ A V + + V W ++ + HG
Sbjct: 292 HGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRR--SAVSWTAMIAGMAMHG 349
Query: 272 NVEMGERVTRKILEME 287
GE R EME
Sbjct: 350 ---YGEEAIRLFNEME 362
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 137/330 (41%), Positives = 204/330 (61%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + K+F+E+ R++++WN +I G VK G++ AR LF++MP R +VSWT +I GY RM
Sbjct: 162 LTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRM 221
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL +FR M EP EI+I+AV PA Q G + + IH Y +K GF
Sbjct: 222 GCYGDALDVFREMQMVG-IEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGF-LRKTG 279
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N LI+ YAKCGCI A LF+ + K+++SW+++I G A HG G EA++ FE M K
Sbjct: 280 ICNALIEMYAKCGCIDEAWNLFDQLV--EKDVISWSTMIGGLANHGKGYEAIQLFEEMCK 337
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
V + PN +TFL VL ACSH GL +EGLK+FD M + P+I+HYGCLID+LGR+G L
Sbjct: 338 VRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEHYGCLIDLLGRSGCLG 397
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
QA S +P + + +W +LL +C H N+++ ++++E+E G+YVL+ N+
Sbjct: 398 QALDTISKMPIK-PDSRIWNSLLSSCRIHRNLQIAVIAVKQLMELEPEESGNYVLLANMY 456
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ D +R+++ + K PG S +
Sbjct: 457 AEHGKWEDVSNIRKLIRNKRIKKTPGSSSI 486
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 139/304 (45%), Gaps = 47/304 (15%)
Query: 7 KLFDELPERNLVTWNVMITGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
K+ + + +L N ++T ++ G + YA LF+++ N+ ++ II Y
Sbjct: 28 KIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLLHPNIFTYNAIIRTYAHNR 87
Query: 63 RSNGALALFRRMVACEYTE--PSEITILAVFPAIWQNGDVRNCQ----LIHGYGEKRGFN 116
+ A+++F +M+ P + T FP + ++ C +HG K G +
Sbjct: 88 HHSSAISVFVQMLTHSTNSVFPDKFT----FPFVIKSCTGILCHRLGMQVHGLVYKFGAD 143
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDIS----------------------------- 147
FH N LID Y K G + +A K+FE++S
Sbjct: 144 -FHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDD 202
Query: 148 VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEG 207
+ + +VSWT++I+G+ G +A++ F MQ V ++P+ ++ ++VL AC+ G +E G
Sbjct: 203 MPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVG 262
Query: 208 LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC 267
K+ ++ L LI+M + G +++A + + + +V+ W T++G
Sbjct: 263 -KWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEK--DVISWSTMIGGL 319
Query: 268 SFHG 271
+ HG
Sbjct: 320 ANHG 323
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 264 bits (675), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 130/330 (39%), Positives = 210/330 (63%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+K +F+ +P RNL +WNVM+ G K GELE AR LF EMP ++ VSW+ +I G+
Sbjct: 188 VKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHN 247
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
A FR + P+E+++ A G + +++HG+ EK GF + +
Sbjct: 248 GFFYEAFGFFRELQQVG-MRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGF-LWMVS 305
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V+N L+DTY+KCG + A +FE + E++++VSWTS+I+G AMHG G+EA++ F M++
Sbjct: 306 VNNALLDTYSKCGNVGMARLVFERMP-EKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEE 364
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++P+ + F+S+L ACSH GL+E+G ++F KM + + P I+HYGC++D+ GRAG+L+
Sbjct: 365 SGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLD 424
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + +P + ++WRTLLGACS HGNV++ ERV ++ E++ GD+VL+ NI
Sbjct: 425 KAYEFIIHMPV-LPTAIIWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIY 483
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ D +RR + ++ K PG S++
Sbjct: 484 AVAGKWKDVAAVRRSMTDQRMNKTPGWSMI 513
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 125/300 (41%), Gaps = 49/300 (16%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ +L +++ + G + +A+ +FEEM NVV+W ++ R GA +F R
Sbjct: 138 DTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNR 197
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M T W N ++ Y K
Sbjct: 198 MPFRNLTS-------------W----------------------------NVMLAGYTKA 216
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + A KLF ++ V K+ VSW+++I GFA +G EA F +Q+V ++PN V+
Sbjct: 217 GELELARKLFLEMPV--KDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTG 274
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
L+AC+ G +E G K +E+ L + L+D + G + A V +P E
Sbjct: 275 ALSACADAGAIEFG-KILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERMP-E 332
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER-GYGGDYVLMYNILAGVWRYGDAER 312
++V W +++ + HG GE + EME G D + +IL G E+
Sbjct: 333 KRSIVSWTSMIAGLAMHG---YGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEK 389
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 263 bits (672), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 203/328 (61%), Gaps = 13/328 (3%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LF+++P+R++VTWN+MI L+K G+ E A LF MP RNV SWT +I GY + ++ A
Sbjct: 185 LFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEA 244
Query: 68 LALFRRM----VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
+ LF +M V C +E+T++AV A G + IH Y + GF ++ +S
Sbjct: 245 IHLFAKMEEAGVKC-----NEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKR-NVRIS 298
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N LID Y KCGC+ A K+FE++ E + +VSW+++I G AMHG +EA+ F M +V
Sbjct: 299 NTLIDMYVKCGCLEEACKVFEEM--EERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVG 356
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
++PN VTF+ +L+ACSH GL+ EG +FF M + ++P I+HYGC++D+L RAG L +A
Sbjct: 357 IEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEA 416
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
+ +P + N VVW LLGAC H NVEM E + +LE++ G YV++ NI A
Sbjct: 417 HEFILNMPMK-PNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAE 475
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
R+ D R+R+ + +R K PG S +
Sbjct: 476 AGRWEDTARVRKFMKDRQVKKTPGWSSI 503
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 123/278 (44%), Gaps = 36/278 (12%)
Query: 33 LEYARSLFE--EMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
YA+ +FE E W + + A+ LF R+ + P T +V
Sbjct: 76 FHYAQQIFECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVC-PDTFTCSSV 134
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS--- 147
A D+ N +++HG EK GF + ++++ N ++ YA CG + A LFE +
Sbjct: 135 LRACLNLLDLSNGRILHGVVEKVGFRS-NLYLQNMIVHLYASCGEMGEARLLFEKMPQRD 193
Query: 148 --------------------------VERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ +N+ SWTS+I+G+ G KEA+ F +M++
Sbjct: 194 VVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEE 253
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+K N VT ++VL AC+ G ++ G++ + +++ LIDM + G LE
Sbjct: 254 AGVKCNEVTVVAVLAACADLGALDLGMRIHE-YSNRHGFKRNVRISNTLIDMYVKCGCLE 312
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERV 279
+A KV + E VV W ++G + HG E R+
Sbjct: 313 EACKVFEEM--EERTVVSWSAMIGGLAMHGRAEEALRL 348
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 44/182 (24%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC----RNVVSWTGIIDG 57
L++ K+F+E+ ER +V+W+ MI GL G E A LF +M N V++ G++
Sbjct: 311 LEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHA 370
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
+ M G ++ RR A S + P I G
Sbjct: 371 CSHM----GLISEGRRFFA------SMTRDYGIIPQIEHYG------------------- 401
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKEAVE 174
C++D ++ G + A + ++ + + N V W +++ +H M +EA++
Sbjct: 402 -------CMVDLLSRAGLLHEAHEFILNMPM-KPNGVVWGALLGACRVHKNVEMAEEAIK 453
Query: 175 NF 176
+
Sbjct: 454 HL 455
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 203/328 (61%), Gaps = 13/328 (3%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LF+++P+R++VTWN+MI L+K G+ E A LF MP RNV SWT +I GY + ++ A
Sbjct: 185 LFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEA 244
Query: 68 LALFRRM----VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
+ LF +M V C +E+T++AV A G + IH Y + GF ++ +S
Sbjct: 245 IHLFAKMEEAGVKC-----NEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKR-NVRIS 298
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N LID Y KCGC+ A K+FE++ E + +VSW+++I G AMHG +EA+ F M +V
Sbjct: 299 NTLIDMYVKCGCLEEACKVFEEM--EERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVG 356
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
++PN VTF+ +L+ACSH GL+ EG +FF M + ++P I+HYGC++D+L RAG L +A
Sbjct: 357 IEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEA 416
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
+ +P + N VVW LLGAC H NVEM E + +LE++ G YV++ NI A
Sbjct: 417 HEFILNMPMK-PNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAE 475
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
R+ D R+R+ + +R K PG S +
Sbjct: 476 AGRWEDTARVRKFMKDRQVKKTPGWSSI 503
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 123/278 (44%), Gaps = 36/278 (12%)
Query: 33 LEYARSLFE--EMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
YA+ +F+ E W + + A+ LF R+ + P T +V
Sbjct: 76 FHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVC-PDTFTCSSV 134
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS--- 147
A D+ N +++HG EK GF + ++++ N ++ YA CG + A LFE +
Sbjct: 135 LRACLNLLDLSNGRILHGVVEKVGFRS-NLYLQNMIVHLYASCGEMGEARLLFEKMPQRD 193
Query: 148 --------------------------VERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ +N+ SWTS+I+G+ G KEA+ F +M++
Sbjct: 194 VVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEE 253
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+K N VT ++VL AC+ G ++ G++ + +++ LIDM + G LE
Sbjct: 254 AGVKCNEVTVVAVLAACADLGALDLGMRIHE-YSNRHGFKRNVRISNTLIDMYVKCGCLE 312
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERV 279
+A KV + E VV W ++G + HG E R+
Sbjct: 313 EACKVFEEM--EERTVVSWSAMIGGLAMHGRAEEALRL 348
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 44/182 (24%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC----RNVVSWTGIIDG 57
L++ K+F+E+ ER +V+W+ MI GL G E A LF +M N V++ G++
Sbjct: 311 LEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHA 370
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
+ M G ++ RR A S + P I G
Sbjct: 371 CSHM----GLISEGRRFFA------SMTRDYGIIPQIEHYG------------------- 401
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKEAVE 174
C++D ++ G + A + ++ + + N V W +++ +H M +EA++
Sbjct: 402 -------CMVDLLSRAGLLHEAHEFILNMPM-KPNGVVWGALLGACRVHKNVEMAEEAIK 453
Query: 175 NF 176
+
Sbjct: 454 HL 455
>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 640
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 136/330 (41%), Positives = 205/330 (62%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++ +F +P RNL +WN M+ G K GEL AR +F EMP R+ VSW+ +I G+
Sbjct: 185 VEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHN 244
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ A FR ++ E +E+++ V A Q G +++HG+ EK GF +
Sbjct: 245 GCFDEAFGFFRELLR-EEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGF-LYVGS 302
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V+N LIDTY+KCG + A +F+++ V R ++VSWTSII+G AMHG G+EA++ F M++
Sbjct: 303 VNNALIDTYSKCGNVAMARLVFQNMPVAR-SIVSWTSIIAGLAMHGCGEEAIQLFHEMEE 361
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++P+ +TF+S+L ACSH GLVEEG F KM + P I+HYGC++D+ GRA RL+
Sbjct: 362 SGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQ 421
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + +P N ++WRTLLGACS HGN+EM E V ++ EM+ GD+VL+ N+
Sbjct: 422 KAYEFICEMPVS-PNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVY 480
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ D +RR + E + K PG S++
Sbjct: 481 AVAGKWKDVSSIRRTMTEHSMKKTPGWSMI 510
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 112/315 (35%), Gaps = 66/315 (20%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
L YA LF P + +I + +L F ++ P T
Sbjct: 52 LHYALRLFHHFPNPDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALK 111
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS----- 147
A+ + +R +H + GF+A HI V LI YA+CG SA ++F+++S
Sbjct: 112 AVANSRHLRPGIQLHSQAFRHGFDA-HIFVGTTLISMYAECGDSGSARRVFDEMSEPNVV 170
Query: 148 ------------------------VERKNLVSWTSIISGF-------------------- 163
+ +NL SW +++G+
Sbjct: 171 TWNAVLTAAFRCGDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRD 230
Query: 164 -----------AMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
A +G EA F + + ++ N V+ VL+AC+ G E G K
Sbjct: 231 EVSWSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFG-KILH 289
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
VE+ L LID + G + A V +P ++V W +++ + HG
Sbjct: 290 GFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVA-RSIVSWTSIIAGLAMHG- 347
Query: 273 VEMGERVTRKILEME 287
GE + EME
Sbjct: 348 --CGEEAIQLFHEME 360
>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 531
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 135/332 (40%), Positives = 214/332 (64%), Gaps = 7/332 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYT 59
L D K+FDE+ R++ WN ++ G K GE++ AR L E MPC RN VSWT +I GY
Sbjct: 167 LGDARKVFDEMRVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVISGYA 226
Query: 60 RMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
R R++ A+ +F+RM+ E +P E+T+LAV A G + + I Y + RG N
Sbjct: 227 RSGRASEAIEVFQRML-MENVDPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNR-A 284
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+ ++N +ID YAK G I AL++FE SV +N+V+WT+II+G A HG G EA+ F+RM
Sbjct: 285 VSLNNAVIDMYAKSGNITKALEVFE--SVNERNVVTWTTIITGLATHGHGAEALVMFDRM 342
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
K +KPN VTF+++L+ACSH G V+ G +FF+ M + + P+I+HYGC+ID+LGRAG+
Sbjct: 343 VKAGVKPNDVTFIAILSACSHVGWVDLGNRFFNSMRSKYGINPNIEHYGCMIDLLGRAGK 402
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
L +AE+V +P E +N +W +LL A + H ++++GER +++++E G+Y+L+ N
Sbjct: 403 LREAEEVIKSMPFE-SNAAIWGSLLAASNVHHDIDVGERALYQLIKLEPNNSGNYMLLAN 461
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ + + R+ ++ +R+++ K G S +
Sbjct: 462 LYSNLGRWDESRMMRKMMKGIGVKKLAGESSI 493
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 124/277 (44%), Gaps = 41/277 (14%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG---ALALFRRMVA-CEYTEPSEIT 86
G L YA S+F P N +I + ++ N A+ ++R+ A C +P T
Sbjct: 61 GHLRYAYSVFTHQPFPNTYLHNTMIRALSLVDERNAHSIAITVYRKFWAFC--AKPDTFT 118
Query: 87 ILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI 146
V + + DV + +HG GF++ +HV LI Y+ CG + A K+F+++
Sbjct: 119 FPFVLKIVVRVSDVWFGRQVHGQAVVFGFDS-SVHVVTGLIQMYSSCGGLGDARKVFDEM 177
Query: 147 SVER-------------------------------KNLVSWTSIISGFAMHGMGKEAVEN 175
V +N VSWT +ISG+A G EA+E
Sbjct: 178 RVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVISGYARSGRASEAIEV 237
Query: 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
F+RM + P+ VT L+VL+AC+ G +E G + V+ + + +IDM
Sbjct: 238 FQRMLMENVDPDEVTLLAVLSACADLGSLELGERIC-SYVDHRGMNRAVSLNNAVIDMYA 296
Query: 236 RAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
++G + +A +V + NVV W T++ + HG+
Sbjct: 297 KSGNITKALEVFESVNER--NVVTWTTIITGLATHGH 331
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 129/330 (39%), Positives = 208/330 (63%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D K+FD + ER+ ++WN +I+G V G++ A +LF+ MP R +VSWT +I GYTR+
Sbjct: 170 LLDAHKVFDGMVERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRL 229
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL +FR+M EP EI+I++V PA Q G + + IH Y ++ G
Sbjct: 230 GSYADALYVFRQMQIVG-VEPDEISIISVLPACAQLGALEVGKWIHMYCDRNGL-LRKTS 287
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N L++ Y+KCGCI A +LF+ +S + +++SW+++I G A HG +EA+E F+RM+K
Sbjct: 288 ICNALMEMYSKCGCIGQAYQLFDQMS--KGDVISWSTMIGGLANHGKAREAIELFKRMKK 345
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++PN +TFL +L+AC+H G EGL +FD M ++ + P+++HYGCL+D+LGRAGRL
Sbjct: 346 AKIEPNGITFLGLLSACAHAGFWNEGLAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLS 405
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
QA V +P + + +W +LL +C H N+++ + E+E G+YVL+ NI
Sbjct: 406 QALDVIEKMPMK-PDSKIWGSLLSSCRTHSNLDIAIIAMEHLEELEPDDTGNYVLLSNIY 464
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + ++ R+R+++ ++ K PG SL+
Sbjct: 465 ADLAKWDGVSRMRKLIKSKSMKKTPGSSLI 494
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 135/298 (45%), Gaps = 47/298 (15%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
K +L YA LF+++ N + +I +T A+ ++ M+ + E SE I
Sbjct: 58 KTEDLGYASLLFKQVKEPNGYLYNAMIRAHTHNKVYALAILFYKEMLRLKDPE-SENPIF 116
Query: 89 A---VFPAIWQNGDVRNC----QLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
FP + ++ C + +H + K G + +I + N LID Y KC + A K
Sbjct: 117 PDRFTFPFVIKSCSGLVCYNLGKQVHAHLCKFGPKS-NITMENALIDMYTKCASLLDAHK 175
Query: 142 LFEDISVER------------------------------KNLVSWTSIISGFAMHGMGKE 171
+F+ + VER + +VSWT++ISG+ G +
Sbjct: 176 VFDGM-VERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYAD 234
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLI 231
A+ F +MQ V ++P+ ++ +SVL AC+ G +E G K+ + +L L+
Sbjct: 235 ALYVFRQMQIVGVEPDEISIISVLPACAQLGALEVG-KWIHMYCDRNGLLRKTSICNALM 293
Query: 232 DMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN----VEMGERVTRKILE 285
+M + G + QA ++ + +V+ W T++G + HG +E+ +R+ + +E
Sbjct: 294 EMYSKCGCIGQAYQLFDQMSK--GDVISWSTMIGGLANHGKAREAIELFKRMKKAKIE 349
>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 259 bits (663), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 132/330 (40%), Positives = 204/330 (61%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D LFDE+ ER ++WN +I+G V+ G++ AR+LF+EMP R +VSWT II GYTR+
Sbjct: 146 LLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRI 205
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL +FR M EP E +I++V PA + G + + IH + + G
Sbjct: 206 GSYIDALDVFREMQIAG-IEPDEASIISVLPACAKLGALETGKWIHMFCARNGL-LRRTC 263
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N LI+ Y KCGCI A +LF+ + ++++SW+++I G A HG +EA+ FERM++
Sbjct: 264 ICNALIEMYTKCGCIDQACQLFD--QMRGRDVISWSTMIGGLANHGKVREAIAIFERMKQ 321
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPN +TF+ +L+AC+H G EEGL +FD M ++ + P+I+HYG L+D+LGRAGRL
Sbjct: 322 TNIKPNGITFVGLLSACAHAGFWEEGLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLS 381
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
QA + +P + + +W +LL +C H N+E+ + E+E G+YVL+ NI
Sbjct: 382 QALDIVEKMPMK-PDSKIWGSLLSSCRTHCNIEVAVIAMEHLEELEPDDTGNYVLLSNIY 440
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + ++ D R+R++V + K PG SL+
Sbjct: 441 ADLGKWDDVSRMRKLVRSKRMKKTPGCSLI 470
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 259 bits (663), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 133/326 (40%), Positives = 205/326 (62%), Gaps = 6/326 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FDE+ +N++ W MI+G + G+L AR LF++ P R+VV WT +I+GY + + + A
Sbjct: 401 IFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDA 460
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
+ALFR M + +P + T++ + Q G + + IHGY ++ + V LI
Sbjct: 461 VALFREM-QIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRI-TMDVVVGTALI 518
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
+ Y+KCGC+ +L++F ++ E K+ SWTSII G AM+G EA+ F M++V KP+
Sbjct: 519 EMYSKCGCVDKSLEIFYEL--EDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPD 576
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TF+ VL+ACSHGGLVEEG +FF+ M + + P ++HYGC+ID+LGRAG L++AE++
Sbjct: 577 DITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELI 636
Query: 248 SGIPSEITNVVV--WRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
IP E +VV + LL AC H NV+MGER+ +K+ +E + L+ NI A V
Sbjct: 637 QEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASVD 696
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
R+ DA+++RR + E K PG SL+
Sbjct: 697 RWEDAKKVRRKMKELGVKKMPGCSLI 722
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 150/328 (45%), Gaps = 42/328 (12%)
Query: 20 WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEY 79
+N +I + +E A+ LF+EM R+ VSW +I GY R R A+ FR M
Sbjct: 281 YNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGN 340
Query: 80 TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSA 139
+P E T+++ A ++ IH Y K F + N L+D YAKCGC+ A
Sbjct: 341 EKPDEATVVSTLSACTALKNLELGDEIHNYVRKEL--GFTTRIDNALLDMYAKCGCLNIA 398
Query: 140 LKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER--------------------- 178
+F+++S+ KN++ WTS+ISG+ G +EA + F++
Sbjct: 399 RNIFDEMSM--KNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHH 456
Query: 179 ----------MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG 228
MQ +KP++ T +++L C+ G +E+G K+ ++E + D+
Sbjct: 457 FDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQG-KWIHGYLDENRITMDVVVGT 515
Query: 229 CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
LI+M + G ++++ ++ + E + W +++ + +G R+ EMER
Sbjct: 516 ALIEMYSKCGCVDKSLEIFYEL--EDKDTASWTSIICGLAMNGKTSEALRL---FSEMER 570
Query: 289 -GYGGDYVLMYNILAGVWRYGDAERLRR 315
G D + +L+ G E RR
Sbjct: 571 VGAKPDDITFIGVLSACSHGGLVEEGRR 598
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 111/236 (47%), Gaps = 9/236 (3%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G L YA +F + ++ + ++ Y + L LF+++ + P T V
Sbjct: 191 GNLRYAEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLRE-DGLWPDGFTYPFV 249
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
AI DVR + + G+ K G + +V N LID Y + + +A KLF++++
Sbjct: 250 LKAIGCLRDVRQGEKVRGFIVKTGMD-LDNYVYNSLIDMYYELSNVENAKKLFDEMTT-- 306
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKV-VLKPNRVTFLSVLNACSHGGLVEEGLK 209
++ VSW +ISG+ ++A+ F MQ+ KP+ T +S L+AC+ +E G +
Sbjct: 307 RDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDE 366
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
+ + +E I + L+DM + G L A + + + NV+ W +++
Sbjct: 367 IHNYVRKELGFTTRIDN--ALLDMYAKCGCLNIARNIFDEM--SMKNVICWTSMIS 418
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 133/326 (40%), Positives = 205/326 (62%), Gaps = 6/326 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FDE+ +N++ W MI+G + G+L AR LF++ P R+VV WT +I+GY + + + A
Sbjct: 355 IFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDA 414
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
+ALFR M + +P + T++ + Q G + + IHGY ++ + V LI
Sbjct: 415 VALFREM-QIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRI-TMDVVVGTALI 472
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
+ Y+KCGC+ +L++F ++ E K+ SWTSII G AM+G EA+ F M++V KP+
Sbjct: 473 EMYSKCGCVDKSLEIFYEL--EDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPD 530
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TF+ VL+ACSHGGLVEEG +FF+ M + + P ++HYGC+ID+LGRAG L++AE++
Sbjct: 531 DITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELI 590
Query: 248 SGIPSEITNVVV--WRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
IP E +VV + LL AC H NV+MGER+ +K+ +E + L+ NI A V
Sbjct: 591 QEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASVD 650
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
R+ DA+++RR + E K PG SL+
Sbjct: 651 RWEDAKKVRRKMKELGVKKMPGCSLI 676
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 150/328 (45%), Gaps = 42/328 (12%)
Query: 20 WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEY 79
+N +I + +E A+ LF+EM R+ VSW +I GY R R A+ FR M
Sbjct: 235 YNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGN 294
Query: 80 TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSA 139
+P E T+++ A ++ IH Y K F + N L+D YAKCGC+ A
Sbjct: 295 EKPDEATVVSTLSACTALKNLELGDEIHNYVRKEL--GFTTRIDNALLDMYAKCGCLNIA 352
Query: 140 LKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER--------------------- 178
+F+++S+ KN++ WTS+ISG+ G +EA + F++
Sbjct: 353 RNIFDEMSM--KNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHH 410
Query: 179 ----------MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG 228
MQ +KP++ T +++L C+ G +E+G K+ ++E + D+
Sbjct: 411 FDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQG-KWIHGYLDENRITMDVVVGT 469
Query: 229 CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
LI+M + G ++++ ++ + E + W +++ + +G R+ EMER
Sbjct: 470 ALIEMYSKCGCVDKSLEIFYEL--EDKDTASWTSIICGLAMNGKTSEALRL---FSEMER 524
Query: 289 -GYGGDYVLMYNILAGVWRYGDAERLRR 315
G D + +L+ G E RR
Sbjct: 525 VGAKPDDITFIGVLSACSHGGLVEEGRR 552
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 111/236 (47%), Gaps = 9/236 (3%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G L YA +F + ++ + ++ Y + L LF+++ + P T V
Sbjct: 145 GNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLRE-DGLWPDGFTYPFV 203
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
AI DVR + + G+ K G + +V N LID Y + + +A KLF++++
Sbjct: 204 LKAIGCLRDVRQGEKVRGFIVKTGMD-LDNYVYNSLIDMYYELSNVENAKKLFDEMTT-- 260
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKV-VLKPNRVTFLSVLNACSHGGLVEEGLK 209
++ VSW +ISG+ ++A+ F MQ+ KP+ T +S L+AC+ +E G +
Sbjct: 261 RDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDE 320
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
+ + +E I + L+DM + G L A + + + NV+ W +++
Sbjct: 321 IHNYVRKELGFTTRIDN--ALLDMYAKCGCLNIARNIFDEM--SMKNVICWTSMIS 372
>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 133/325 (40%), Positives = 206/325 (63%), Gaps = 9/325 (2%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
KLFDE+P ++ VT + MIT E A +FE MP +++V+W +I+G+ + N
Sbjct: 36 KLFDEMPHKDTVTLDTMITAY-----FESAYKVFELMPEKDIVAWNSVINGFALNGKPNE 90
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL L++RM E EP T++++ A + + + H Y K G N ++H +N L
Sbjct: 91 ALTLYKRM-GSEGVEPDGFTMVSLLSACAELATLVLGRRAHVYMVKVGLNK-NLHANNAL 148
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+D YAKCG I A K+F+++ +ER N+VSWTS+I G A++G GKEA+E+F+ M++ L P
Sbjct: 149 LDLYAKCGTISEARKIFDEMGIER-NVVSWTSLIVGLAVNGFGKEALEHFKDMEREGLVP 207
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +TF+ VL ACSH G+V EG ++F +M E+ +++P I+HYGC++D+LGRAG L++A
Sbjct: 208 SEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDY 267
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P + N V+WRTLLGAC+ HG++ +G ++L++E GDYVL+ N+ A R
Sbjct: 268 IQDMPLQ-PNAVIWRTLLGACTIHGHLGLGAFARARLLQLEPKDSGDYVLLSNLYASEQR 326
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ D +RR + K PG SLV
Sbjct: 327 WSDVHEVRRTMLSEGVRKTPGYSLV 351
>gi|224126329|ref|XP_002329527.1| predicted protein [Populus trichocarpa]
gi|222870236|gb|EEF07367.1| predicted protein [Populus trichocarpa]
Length = 377
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 132/332 (39%), Positives = 206/332 (62%), Gaps = 6/332 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L K+FDE+P +N++ W M++G V +GEL+ AR LFE P ++VV WT +I+GY +
Sbjct: 8 LSVARKIFDEMPHKNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAMINGYVQF 67
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
N + A+ALF+ M + +P + ++A+ Q G + IHGY +++G +
Sbjct: 68 NHFDEAVALFQEM-QIQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGIPVDAV- 125
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V LI+ Y+KCGCI AL++F + K+ +WTSII G AM+G +A+E F +M++
Sbjct: 126 VGTSLIEMYSKCGCIEKALRIF--CGLREKDTATWTSIICGLAMNGKTSKALELFSKMKQ 183
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
V P+ VTF+ VL+ACSHGGLVEEG +FF+ M + P ++HYGCLID+LGRAG+L+
Sbjct: 184 VEAIPDEVTFIGVLSACSHGGLVEEGREFFNSMTSIYNIEPKLEHYGCLIDLLGRAGQLD 243
Query: 242 QAEKVASGIPSEITNVVV--WRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
+AE++ I + ++V + +LL AC + NV+MGERV +++++E + L+ N
Sbjct: 244 EAEELIKKIVNANNEIIVPLYGSLLSACRIYKNVQMGERVAEQLVKIESRDSSVHTLLAN 303
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
I A R+ D R+RR + + K PG S +
Sbjct: 304 IYASAGRWVDVNRVRREMKDLGVKKVPGCSSI 335
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 86/189 (45%), Gaps = 36/189 (19%)
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER----------- 178
Y KCGC+ A K+F+++ KN++ WTS++SG+ +G +A E FER
Sbjct: 2 YCKCGCLSVARKIFDEMP--HKNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTA 59
Query: 179 --------------------MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEEC 218
MQ +KP++ +++L C+ G +E+G + ++E
Sbjct: 60 MINGYVQFNHFDEAVALFQEMQIQRVKPDKFVLVALLTGCAQMGALEQG-TWIHGYIDEK 118
Query: 219 EVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGER 278
+ D LI+M + G +E+A ++ G+ + T W +++ + +G
Sbjct: 119 GIPVDAVVGTSLIEMYSKCGCIEKALRIFCGLREKDT--ATWTSIICGLAMNGKTSKALE 176
Query: 279 VTRKILEME 287
+ K+ ++E
Sbjct: 177 LFSKMKQVE 185
>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 130/330 (39%), Positives = 210/330 (63%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D K+FDE+ ER++++WN +++G + G+++ A+ LF M + +VSWT +I GYT +
Sbjct: 160 LVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGI 219
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
A+ FR M EP EI++++V P+ Q G + + IH Y E+RGF
Sbjct: 220 GCYVEAMDFFREMQLAG-IEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLK-QTG 277
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LI+ Y+KCG I A++LF + E K+++SW+++ISG+A HG A+E F MQ+
Sbjct: 278 VCNALIEMYSKCGVISQAIQLFGQM--EGKDVISWSTMISGYAYHGNAHGAIETFNEMQR 335
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPN +TFL +L+ACSH G+ +EGL++FD M ++ ++ P I+HYGCLID+L RAG+LE
Sbjct: 336 AKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLE 395
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++ +P + + +W +LL +C GN+++ ++E+E G+YVL+ NI
Sbjct: 396 RAVEITKTMPMK-PDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIY 454
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + ++ D RLR+++ N K PG SL+
Sbjct: 455 ADLGKWEDVSRLRKMIRNENMKKTPGGSLI 484
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 129/286 (45%), Gaps = 39/286 (13%)
Query: 23 MITGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACE 78
M+T +V K +++YA LF ++ NV + II YT + + ++++++
Sbjct: 44 MVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKS 103
Query: 79 YTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFS 138
+ P T +F + G + +HG+ K G FH+ N LID Y K +
Sbjct: 104 FELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFG-PRFHVVTENALIDMYMKFDDLVD 162
Query: 139 ALKLFEDISVER------------------------------KNLVSWTSIISGFAMHGM 168
A K+F+++ ER K +VSWT++ISG+ G
Sbjct: 163 AHKVFDEM-YERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGC 221
Query: 169 GKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG 228
EA++ F MQ ++P+ ++ +SVL +C+ G +E G K+ E L
Sbjct: 222 YVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELG-KWIHLYAERRGFLKQTGVCN 280
Query: 229 CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
LI+M + G + QA ++ + E +V+ W T++ ++HGN
Sbjct: 281 ALIEMYSKCGVISQAIQLFGQM--EGKDVISWSTMISGYAYHGNAH 324
>gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 134/332 (40%), Positives = 207/332 (62%), Gaps = 7/332 (2%)
Query: 2 LKDGSKLFDELP--ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYT 59
+ D KLFD +P RN+ WN M+T K ++ A+ LF+ MP RN++SWT +I GY
Sbjct: 160 ISDARKLFDGIPLTARNVALWNAMLTSYAKICDMPNAQHLFDSMPQRNLISWTALISGYA 219
Query: 60 RMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
+NR + A+A+FR M + P EIT+LAV A Q G + + I Y + G + +
Sbjct: 220 HINRPHQAIAIFRTM-QLQNVVPDEITLLAVLSACAQLGALELGEWIRNYIDIHGLHR-N 277
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+ + N LID YAK G I AL +FE S++ K +V+WT++I+G A+HG+G +A+E F RM
Sbjct: 278 VPLHNALIDMYAKSGNIKRALLIFE--SMKHKTIVTWTTMIAGLALHGLGTQALEMFSRM 335
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
++ +KPN +TF++VL+ACSH GLV+ FF M + P I+HYGC+ID+LGRAG
Sbjct: 336 ERDRVKPNEITFIAVLSACSHVGLVQLARSFFTNMRSRYTIQPKIEHYGCMIDLLGRAGY 395
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
L++A+++ +P E N +W +LL A HG+ +GER + ++E+E G+Y L+ N
Sbjct: 396 LQEAQQLLQQMPFE-PNAAIWGSLLAASYTHGDAMLGERTLKHLIELEPNNSGNYALLSN 454
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
I A + R+ + +R+++ +R K PG S +
Sbjct: 455 IYASLGRWKASRIVRKMMRDRGVKKIPGGSFI 486
>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 542
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 132/325 (40%), Positives = 201/325 (61%), Gaps = 4/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFDE+P ++LV+WNVMIT K GE+E AR LF+E+P ++VV+W +I GY +
Sbjct: 200 QLFDEMPMKDLVSWNVMITAYAKHGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSRLNKE 259
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL +F M P ++T+L++ A GD+ + IH + +SN L
Sbjct: 260 ALEMFDAMRDLG-QRPDDVTMLSILSASADLGDLEIGKKIHRSIFDMCCGDLSVLLSNAL 318
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YAKCG I +AL++F+ + +K+ SW SII G A+HG +E++ F+ M ++ +KP
Sbjct: 319 IDMYAKCGSIGNALEVFQ--GMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLRLKMKP 376
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N +TF++VL ACSH G V EG +F+ M ++ P+IKHYGC++D+LGRAG L +A
Sbjct: 377 NEITFVAVLVACSHAGKVREGRMYFNLMKNVFKIEPNIKHYGCMVDILGRAGLLIEAFDF 436
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ E N ++WRTLLGAC HG+VE+G R ++L+M + GDYVL+ NI A
Sbjct: 437 IDTMEIE-PNAIIWRTLLGACRVHGDVELGRRANEQLLKMRKDESGDYVLLSNIYASQGE 495
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ +++R+++D+ K G SL+
Sbjct: 496 WDGVQKVRKLMDDGGVKKKVGHSLI 520
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 124/274 (45%), Gaps = 45/274 (16%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ N N +I G+L AR+LF+ R VV W+ + GY R + + A LF
Sbjct: 145 QSNTFVRNTLIYFHANCGDLATARALFDASAKREVVPWSALTAGYARRGKLDVARQLFDE 204
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M + W N +I YAK
Sbjct: 205 MPMKDLVS-------------W----------------------------NVMITAYAKH 223
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + A KLF++ V +K++V+W ++I+G+ + + KEA+E F+ M+ + +P+ VT LS
Sbjct: 224 GEMEKARKLFDE--VPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLS 281
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L+A + G +E G K + + C + LIDM + G + A +V G+ +
Sbjct: 282 ILSASADLGDLEIGKKIHRSIFDMCCGDLSVLLSNALIDMYAKCGSIGNALEVFQGMRKK 341
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEME 287
T+ W +++G + HG+ E + +++L ++
Sbjct: 342 DTS--SWNSIIGGLALHGHAEESINLFQEMLRLK 373
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 256 bits (655), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 204/327 (62%), Gaps = 9/327 (2%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++++E+ ER+ V+WN +I+G V+ G+++ AR +F+EMPCR +VSWT +I+GY R
Sbjct: 162 QVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYAD 221
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF--NAFHIHVSN 124
AL +FR M EP EI++++V PA Q G + + IH Y EK GF NA V N
Sbjct: 222 ALGIFREMQVVG-IEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGFLKNA---GVFN 277
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
L++ YAKCGCI A LF + K+++SW+++I G A HG G A+ FE MQK +
Sbjct: 278 ALVEMYAKCGCIDEAWGLFNQMI--EKDVISWSTMIGGLANHGKGYAAIRVFEDMQKAGV 335
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
PN VTF+ VL+AC+H GL EGL++FD M + + P I+HYGCL+D+LGR+G++EQA
Sbjct: 336 TPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQIEHYGCLVDLLGRSGQVEQAL 395
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+P + + W +LL +C H N+E+ ++L++E G+YVL+ NI A +
Sbjct: 396 DTILKMPMQ-PDSRTWNSLLSSCRIHHNLEIAVVAMEQLLKLEPEESGNYVLLANIYAKL 454
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
++ +R+++ + K PG SL+
Sbjct: 455 DKWEGVSNVRKLIRSKRIKKTPGCSLI 481
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 165/355 (46%), Gaps = 60/355 (16%)
Query: 7 KLFDELPERNLVTWNVMITGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
K+ + + +L N ++T ++ ++YA +F+++ NV S+ II YT +
Sbjct: 25 KIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLENPNVFSYNAIIRTYTHNH 84
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNC----QLIHGYGEKRGFNAF 118
+ A+ +F +M+ + P + T FP + ++ C Q +H + K G
Sbjct: 85 KHPLAITVFNQMLTTKSASPDKFT----FPFVIKSCAGLLCRRLGQQVHAHVCKFGPKT- 139
Query: 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVER---------------------------- 150
H N LID Y KCG + A +++E+++ ER
Sbjct: 140 HAITENALIDMYTKCGDMSGAYQVYEEMT-ERDAVSWNSLISGHVRLGQMKSAREVFDEM 198
Query: 151 --KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
+ +VSWT++I+G+A G +A+ F MQ V ++P+ ++ +SVL AC+ G +E G
Sbjct: 199 PCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVG- 257
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
K+ K E+ L + + L++M + G +++A + + + + +V+ W T++G +
Sbjct: 258 KWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEK--DVISWSTMIGGLA 315
Query: 269 FHGNVEMGERVTRKILEMER-GYGGDYVLMYNIL-----AGVW----RYGDAERL 313
HG G R +M++ G + V +L AG+W RY D R+
Sbjct: 316 NHGK---GYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRV 367
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 256 bits (655), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 126/330 (38%), Positives = 209/330 (63%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D K+F+E+ ER+ V+WN +I+G V+ G++ AR++FEEM + + SWT I+ GY R+
Sbjct: 168 LDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARI 227
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL FRRM EP EI++++V PA Q G + + IH Y +K GF +I
Sbjct: 228 GCYADALEFFRRMQMVG-IEPDEISLVSVLPACAQLGALELGKWIHFYADKAGF-LRNIC 285
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LI+ YAKCG I +LF+ ++ ++++SW+++I G A HG EA+E F+ MQK
Sbjct: 286 VCNALIEMYAKCGSIDEGRRLFDQMN--ERDVISWSTMIVGLANHGRAHEAIELFQEMQK 343
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++PN +TF+ +L+AC+H GL+ EGL++F+ M + + P ++HYGCL+++LG +GRL+
Sbjct: 344 AKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLD 403
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
QA ++ +P + + +W +LL +C H N+E+ +LE+E G+YVL+ N+
Sbjct: 404 QALELIKKMPMK-PDSAIWGSLLSSCRSHSNLEIAVIAMEHLLELEPADTGNYVLLSNLY 462
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + ++ R+R+++ ++ K PG S +
Sbjct: 463 ADLGKWDGVSRMRKLMRSKSMKKTPGCSSI 492
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 125/274 (45%), Gaps = 37/274 (13%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
E EYA LF+ + N + +I Y A+ ++++M+ + E
Sbjct: 60 AETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFT 119
Query: 91 FPAIWQNGDVRNC----QLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI 146
FP + ++ C + +HG+ K G + + V N L++ Y KC + A K+FE++
Sbjct: 120 FPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTV-VENSLVEMYVKCDSLDDAHKVFEEM 178
Query: 147 S-----------------------------VERKNLVSWTSIISGFAMHGMGKEAVENFE 177
+ ++ K + SWT+I+SG+A G +A+E F
Sbjct: 179 TERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFR 238
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
RMQ V ++P+ ++ +SVL AC+ G +E G K+ ++ L +I LI+M +
Sbjct: 239 RMQMVGIEPDEISLVSVLPACAQLGALELG-KWIHFYADKAGFLRNICVCNALIEMYAKC 297
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
G +++ ++ + +V+ W T++ + HG
Sbjct: 298 GSIDEGRRLFDQMNER--DVISWSTMIVGLANHG 329
>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 131/326 (40%), Positives = 204/326 (62%), Gaps = 5/326 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FDE+P ++LV+WNVMITG VK GE+E AR+LF+E P ++VV+W +I GY
Sbjct: 200 QIFDEMPVKDLVSWNVMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAGYVLRGEQRQ 259
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL +F M P E+T+L++ A GD++ + +H + + + N L
Sbjct: 260 ALEMFEEMRNVGEC-PDEVTMLSLLSACADLGDLQVGRKLHCSISEMTRGDLSVLLGNAL 318
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV-LK 185
+D YAKCG I AL++F+ + K++ +W S+I G A HG +E+++ F MQ + +K
Sbjct: 319 VDMYAKCGSIEIALQVFKKM--REKDVTTWNSVIGGLAFHGHAEESIKLFAEMQALKNIK 376
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN +TF+ V+ ACSH G VEEG ++F M E ++ P++ H+GC++D+LGRAG L +A +
Sbjct: 377 PNEITFVGVIVACSHAGNVEEGRRYFKLMRERYDIEPNMIHHGCMVDLLGRAGLLSEAFE 436
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
+ + + E N ++WRTLLGAC HGNVE+G ++L++ R GDYVL+ NI A
Sbjct: 437 LIAKMEIE-PNAIIWRTLLGACRVHGNVELGRLANERLLKLRRDESGDYVLLSNIYASAG 495
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
+ AE +R+++D+ K GRSL+
Sbjct: 496 EWDGAEEVRKLMDDGGVRKEAGRSLI 521
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 116/261 (44%), Gaps = 45/261 (17%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E N N +I G+L ARS+F ++P R+VVSW+ + GY R A +F
Sbjct: 145 EVNSFVRNTLIYFHSNCGDLVIARSIFYDLPERSVVSWSALTAGYARRGELGVARQIFDE 204
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M + W N +I Y K
Sbjct: 205 MPVKDLVS-------------W----------------------------NVMITGYVKN 223
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + +A LF++ K++V+W ++I+G+ + G ++A+E FE M+ V P+ VT LS
Sbjct: 224 GEMENARTLFDE--APEKDVVTWNTMIAGYVLRGEQRQALEMFEEMRNVGECPDEVTMLS 281
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L+AC+ G ++ G K + E + L+DM + G +E A +V + +
Sbjct: 282 LLSACADLGDLQVGRKLHCSISEMTRGDLSVLLGNALVDMYAKCGSIEIALQVFKKMREK 341
Query: 254 ITNVVVWRTLLGACSFHGNVE 274
+V W +++G +FHG+ E
Sbjct: 342 --DVTTWNSVIGGLAFHGHAE 360
>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
Length = 537
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 131/327 (40%), Positives = 203/327 (62%), Gaps = 7/327 (2%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFDE P ++LV+WNVMIT K G++ AR LF+ P R+VVSW +I GY R
Sbjct: 202 ELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQ 261
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF--HIHVSN 124
A+ LF +M A +P +T+L++ A +GD+ + +HG+ R F+ + N
Sbjct: 262 AMELFEQMQAMG-EKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGR-FSRIGPTTALGN 319
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LID YAKCG + SAL++F ++ KN+ +W SII G A+HG E++ F +M + +
Sbjct: 320 ALIDMYAKCGSMTSALEVF--WLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNV 377
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
KP+ +TF++VL ACSHGG+V++G ++F M + + P+IKHYGC++DML R G L++A
Sbjct: 378 KPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAF 437
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+ + E N V+WRTLLGAC HG +E+ E R++L+ GD+VL+ NI A V
Sbjct: 438 EFIGTMKIE-PNPVIWRTLLGACRIHGEIELAEHANRELLKARSDASGDFVLLSNIYASV 496
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
+ +E +R+++D+ K GR+++
Sbjct: 497 GEWPGSENMRKLMDDSGVNKEAGRAVI 523
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 118/273 (43%), Gaps = 46/273 (16%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E + N +I G+L A +LF+ + V+W+ +I G+ R A LF
Sbjct: 147 ESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELF-- 204
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
+ S + L + N +I YAK
Sbjct: 205 -------DESPVKDLVSW--------------------------------NVMITAYAKL 225
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + A +LF+ +++VSW ++ISG+ G K+A+E FE+MQ + KP+ VT LS
Sbjct: 226 GDMAPARELFD--GAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLS 283
Query: 194 VLNACSHGGLVEEGLKFFDKMVEE-CEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
+L+AC+ G ++ G + + + P LIDM + G + A +V +
Sbjct: 284 LLSACADSGDLDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQD 343
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
+ NV W +++G + HG+ V RK+L+
Sbjct: 344 K--NVSTWNSIIGGLALHGHATESIAVFRKMLQ 374
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 129/330 (39%), Positives = 207/330 (62%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ D LF+++P+R+ VTWN++I L K G+++ A F MP +NV SWT +I G+ +
Sbjct: 61 MGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQC 120
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ N A+ LF ++ E P+E+T+++V A GD+ +++H Y K GF ++H
Sbjct: 121 GKPNEAIDLFMKLED-EAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKR-NVH 178
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LID Y KCGC+ +A ++F ++ E + +VSW+++I+G AMHG +EA+ F M K
Sbjct: 179 VCNTLIDMYVKCGCLENARRVFYEM--EERTVVSWSAMIAGLAMHGQAEEALCLFSEMIK 236
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ +KPN VTF+ +L+ACSH GL++EG +FF M + V+P I+HYGC++D+ RAG LE
Sbjct: 237 LGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLE 296
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + +P + N VVW LLG C H N+++ E + + E++ G YV++ NI
Sbjct: 297 EAHEFILSMPIK-PNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIY 355
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ DA R+R+++ +R K G S +
Sbjct: 356 AEAERWEDAARVRKLMKDRGVKKTSGWSSI 385
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 41/226 (18%)
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
P T V A + DV N + IHG +K GF + ++ + N +++ Y CG + A+
Sbjct: 8 PDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGS-NLFLQNMILNLYGLCGEMGDAML 66
Query: 142 LFEDIS-----------------------------VERKNLVSWTSIISGFAMHGMGKEA 172
LFE + + KN+ SWTS+ISGF G EA
Sbjct: 67 LFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEA 126
Query: 173 VENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH--YGC- 229
++ F +++ ++PN VT +SVL AC+ G ++ G ++V E K + C
Sbjct: 127 IDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLG-----RIVHEYSTKSGFKRNVHVCN 181
Query: 230 -LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
LIDM + G LE A +V + E VV W ++ + HG E
Sbjct: 182 TLIDMYVKCGCLENARRVFYEM--EERTVVSWSAMIAGLAMHGQAE 225
>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
gi|219886289|gb|ACL53519.1| unknown [Zea mays]
Length = 537
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 131/327 (40%), Positives = 203/327 (62%), Gaps = 7/327 (2%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFDE P ++LV+WNVMIT K G++ AR LF+ P R+VVSW +I GY R
Sbjct: 202 ELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQ 261
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF--HIHVSN 124
A+ LF +M A +P +T+L++ A +GD+ + +HG+ R F+ + N
Sbjct: 262 AMELFEQMQAMG-EKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGR-FSRIGPTTALGN 319
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LID YAKCG + SAL++F ++ KN+ +W SII G A+HG E++ F +M + +
Sbjct: 320 ALIDMYAKCGSMTSALEVF--WLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNV 377
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
KP+ +TF++VL ACSHGG+V++G ++F M + + P+IKHYGC++DML R G L++A
Sbjct: 378 KPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAF 437
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+ + E N V+WRTLLGAC HG +E+ E R++L+ GD+VL+ NI A V
Sbjct: 438 EFIGTMKIE-PNPVIWRTLLGACRIHGEIELAEHANRELLKARSDASGDFVLLSNIYASV 496
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
+ +E +R+++D+ K GR+++
Sbjct: 497 GEWPGSENMRKLMDDSGVNKEAGRAVI 523
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 118/273 (43%), Gaps = 46/273 (16%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E + N +I G+L A +LF+ + V+W+ +I G+ R A LF
Sbjct: 147 ESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELF-- 204
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
+ S + L + N +I YAK
Sbjct: 205 -------DESPVKDLVSW--------------------------------NVMITAYAKL 225
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + A +LF+ +++VSW ++ISG+ G K+A+E FE+MQ + KP+ VT LS
Sbjct: 226 GDMAPARELFD--GAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLS 283
Query: 194 VLNACSHGGLVEEGLKFFDKMVEE-CEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
+L+AC+ G ++ G + + + P LIDM + G + A +V +
Sbjct: 284 LLSACADSGDLDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQD 343
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
+ NV W +++G + HG+ V RK+L+
Sbjct: 344 K--NVSTWNSIIGGLALHGHATESIAVFRKMLQ 374
>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 128/330 (38%), Positives = 208/330 (63%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D K+FDE+ ER++++WN +++G + G+++ A+ LF M + +VSWT +I GYT +
Sbjct: 160 LVDAHKVFDEMSERDVISWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGI 219
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
A+ FR M EP EI++++V P+ G + + IH Y E+RG
Sbjct: 220 GCYVEAMDFFREMQLAG-IEPDEISLISVLPSCAHLGSLELGKWIHMYAERRGLLK-QTG 277
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LI+ Y+KCG + A++LFE + K+++SW+++ISG+A HG A E F MQ+
Sbjct: 278 VCNALIEMYSKCGMLSQAIQLFE--QTKGKDVISWSTMISGYAYHGNAHRAFETFIEMQR 335
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPN +TFL +L+ACSH GL ++GLK+FD M ++ ++ P I+HYGCLID+L RAG+LE
Sbjct: 336 AKVKPNGITFLGLLSACSHVGLWQQGLKYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLE 395
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++ +P + + +W +LL +C GN+++ ++E+E G+YVL+ NI
Sbjct: 396 RAVEITKTMPVK-PDSKIWGSLLSSCRTKGNLDVALVAMDHLVEVEPDDMGNYVLLANIY 454
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + ++ D RLR+++ + N K PG SL+
Sbjct: 455 ADLGKWEDVSRLRKIIRKENMKKTPGCSLI 484
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 138/303 (45%), Gaps = 42/303 (13%)
Query: 21 NVMITGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVA 76
+ M+T +V K G+++YA LF ++ NV + II YT + + ++++++
Sbjct: 42 SFMVTKMVDLCDKLGDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLR 101
Query: 77 CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136
P T +F + G + +HG+ K G FH+ N LID Y K +
Sbjct: 102 KTIEFPDRFTFPFMFKSCASLGSCYLGKQVHGHLYKFG-PRFHVVTENALIDMYMKFDDL 160
Query: 137 FSALKLFEDISVER------------------------------KNLVSWTSIISGFAMH 166
A K+F+++S ER K +VSWT++ISG+
Sbjct: 161 VDAHKVFDEMS-ERDVISWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGI 219
Query: 167 GMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH 226
G EA++ F MQ ++P+ ++ +SVL +C+H G +E G K+ E +L
Sbjct: 220 GCYVEAMDFFREMQLAGIEPDEISLISVLPSCAHLGSLELG-KWIHMYAERRGLLKQTGV 278
Query: 227 YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM 286
LI+M + G L QA ++ + +V+ W T++ ++HGN R +EM
Sbjct: 279 CNALIEMYSKCGMLSQAIQLFEQTKGK--DVISWSTMISGYAYHGN---AHRAFETFIEM 333
Query: 287 ERG 289
+R
Sbjct: 334 QRA 336
>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
Length = 545
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 133/325 (40%), Positives = 205/325 (63%), Gaps = 5/325 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFDE P ++LV+WNVMIT K G++ AR LF+++P R+VVSW +I GY R A
Sbjct: 200 LFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHA 259
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHG-YGEKRGFNAFHIHVSNCL 126
L LF +M +P +T+L++ A +GD+ Q +H + N F + + N L
Sbjct: 260 LELFEQMQRMG-EKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNAL 318
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YAKCG + SA ++F S+ K++ +W SI+ G A+HG E+++ FE+M K ++P
Sbjct: 319 IDMYAKCGSMKSAHEVF--WSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRP 376
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +TF++VL ACSHGG+V++G +FF+ M + V P+IKHYGC++DMLGRAG L++A +
Sbjct: 377 DEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEF 436
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ E N V+WRTLL AC HG +E+ + R++L+ GDYVL+ NI A V
Sbjct: 437 IDTMKCE-PNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGE 495
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ +E++R+++D+ K G++ V
Sbjct: 496 WFGSEKMRKLMDDSGVNKEAGQTFV 520
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 109/262 (41%), Gaps = 48/262 (18%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E + N +I G L A +LF+ + V+W+ +I G R A LF
Sbjct: 144 ESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDE 203
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
+ W N +I YAK
Sbjct: 204 CPVKDLVS-------------W----------------------------NVMITAYAKR 222
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + A +LF+ V +++VSW +ISG+ G A+E FE+MQ++ KP+ VT LS
Sbjct: 223 GDMALARELFD--QVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLS 280
Query: 194 VLNACSHGGLVEEGLKFFDKMVE--ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
+L+AC+ G ++ G + + + P + LIDM + G ++ A +V +
Sbjct: 281 LLSACADSGDLDVGQRLHSSLSDMFSRNGFP-VVLGNALIDMYAKCGSMKSAHEVFWSMR 339
Query: 252 SEITNVVVWRTLLGACSFHGNV 273
+ +V W +++G + HG+V
Sbjct: 340 DK--DVSTWNSIVGGLALHGHV 359
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 13/189 (6%)
Query: 92 PAIWQN-GDVRNCQLIHGYGEKRGFNAFHIHVSNCLI-DTYAKCGCIFSALKLFEDISVE 149
P W+ +R+ + +H RGF + + L A G I A +F+ I
Sbjct: 12 PPAWRRCRSLRHIKQMHAVMALRGFLSDPSELRELLFASAVAVRGAIAHAYLVFDQIP-- 69
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERM----QKVVLKPNRVTFLSVLNACSHGGLVE 205
R + + ++I G A ++AV + RM ++P+++TF VL AC+ G +
Sbjct: 70 RPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGD 129
Query: 206 EGLKFFDKMVEE-CEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
G++ +V+ CE +K+ LI M G L A + G E + V W ++
Sbjct: 130 TGVQVHAHVVKAGCESDAFVKN--ALIGMHASCGNLGIAAALFDGRARE--DAVAWSAMI 185
Query: 265 GACSFHGNV 273
C+ G++
Sbjct: 186 TGCARRGDI 194
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 202/326 (61%), Gaps = 6/326 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+F+E+P +N++ W M++G GELE AR LFE P R+VV WT +I+GY + NR + A
Sbjct: 295 VFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEA 354
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
+ALFR M +P + ++++ Q G + + IH + ++ + V LI
Sbjct: 355 VALFREM-QIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAV-VGTALI 412
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
+ YAKCG I AL++F + V K+ SWTSII G AM+G +A+E F +M++ ++P+
Sbjct: 413 EMYAKCGFIEKALEIFYGLRV--KDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPD 470
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TF+ VL+ACSHGGLVEEG KFF+ M E ++ P ++HYGCL+D+LGRAG L +AE++
Sbjct: 471 DITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLVDLLGRAGLLNEAEELI 530
Query: 248 SGIPSEITNVVV--WRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
IP E + V + +LL AC +GNVEMGERV +++++ E + L+ NI A
Sbjct: 531 KKIPDENKAITVPLYGSLLSACRIYGNVEMGERVAKQLVKFESSDSSVHTLLANIYAFAD 590
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
R+ D ++RR + + K PG S +
Sbjct: 591 RWEDVTKVRRKMKDLGVKKTPGCSSI 616
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 81/326 (24%), Positives = 144/326 (44%), Gaps = 40/326 (12%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I + + + LF+EMP R+V+SW +I GY + R A+ +F RM
Sbjct: 176 NSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGL 235
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P E T+++ A + + IH Y R F + N L+D Y KCGC+ A
Sbjct: 236 MPDEATVVSTLSACTALKRLELGKKIHHY--VRDNVKFTPIIGNALLDMYCKCGCLSIAR 293
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE----------------------- 177
+FE++ KN++ WT+++SG+A G +EA E FE
Sbjct: 294 AVFEEMP--SKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRF 351
Query: 178 --------RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC 229
MQ +KP++ +S+L C+ G +E+G K+ + ++E + D
Sbjct: 352 DEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQG-KWIHEFIDENRIPIDAVVGTA 410
Query: 230 LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 289
LI+M + G +E+A ++ G+ + + W +++ + +G + K+ + G
Sbjct: 411 LIEMYAKCGFIEKALEIFYGL--RVKDTASWTSIICGLAMNGKTSKALELFSKM--KQAG 466
Query: 290 YGGDYVLMYNILAGVWRYGDAERLRR 315
D + +L+ G E R+
Sbjct: 467 VRPDDITFIGVLSACSHGGLVEEGRK 492
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 117/247 (47%), Gaps = 13/247 (5%)
Query: 31 GELEYARSLFEEM--PCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
G L YA +F+ + PC ++ + II + + L LF ++ + P T
Sbjct: 85 GNLNYAEKMFKYIRYPC--LLIYNLIIKAFAKKGNYKRTLVLFSKLRE-DGLWPDNFTYP 141
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
VF AI G+V + + G K G F +V N LID YA+ LF+++
Sbjct: 142 FVFKAIGYLGEVSKAEKLRGLVTKTGLE-FDTYVRNSLIDMYAQLALTDVMKMLFDEMP- 199
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFLSVLNACSHGGLVEEG 207
++++SW +ISG+ ++A+ F RMQ+ L P+ T +S L+AC+ +E G
Sbjct: 200 -DRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELG 258
Query: 208 LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC 267
K + + + P I + L+DM + G L A V +PS+ NV+ W T++
Sbjct: 259 KKIHHYVRDNVKFTPIIGN--ALLDMYCKCGCLSIARAVFEEMPSK--NVICWTTMVSGY 314
Query: 268 SFHGNVE 274
+ G +E
Sbjct: 315 ANCGELE 321
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 129/325 (39%), Positives = 203/325 (62%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FD++P+R+++TWN+MI LVK G+ E A LF EMP RNV SWT +I GY + +S
Sbjct: 169 KVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKE 228
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ LF M P+E+T++AV A G++ + IH + + G+ +I V N L
Sbjct: 229 AIDLFLEMEDAGLL-PNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEK-NIRVCNTL 286
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y KCGC+ A ++F+++ E + +VSW+++I+G A HG ++A+ F +M +KP
Sbjct: 287 IDMYVKCGCLEDACRIFDNM--EERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKP 344
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N VTF+ +L+ACSH G+VE+G K+F M + ++P I+HYGC++D+ RAG L++A +
Sbjct: 345 NAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEF 404
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P N VVW LLG C H N+++ E TR + +++ G YV++ NI A R
Sbjct: 405 IMNMPIA-PNGVVWGALLGGCKVHKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGR 463
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ D R+R+++ +R K PG S +
Sbjct: 464 WEDVARVRKLMRDRGVKKTPGWSSI 488
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 137/314 (43%), Gaps = 36/314 (11%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
YA+ +F+ + V W + + + A++LF R+ + + P T V
Sbjct: 61 SSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDIS-PDHYTCSFV 119
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFE------ 144
A + DVRN +++HGY EK G + ++ + N ++ YA CG I A K+F+
Sbjct: 120 LKACSRLLDVRNGKIVHGYVEKLGLQS-NMFLQNMIVHLYALCGEIGVARKVFDKMPQRD 178
Query: 145 ----DISVER-------------------KNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+I + R +N+ SWTS+I G+A G KEA++ F M+
Sbjct: 179 VITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMED 238
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
L PN VT ++VL AC+ G + G + D +I+ LIDM + G LE
Sbjct: 239 AGLLPNEVTVVAVLVACADMGNLVLGRRIHD-FSNRSGYEKNIRVCNTLIDMYVKCGCLE 297
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A ++ + E VV W ++ + HG E + K++ G + V IL
Sbjct: 298 DACRIFDNM--EERTVVSWSAMIAGLAAHGRAEDALALFNKMINT--GVKPNAVTFIGIL 353
Query: 302 AGVWRYGDAERLRR 315
G E+ R+
Sbjct: 354 HACSHMGMVEKGRK 367
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 74/187 (39%), Gaps = 45/187 (24%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM------PCRNVVSWTGII 55
L+D ++FD + ER +V+W+ MI GL G E A +LF +M P N V++ GI+
Sbjct: 296 LEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKP--NAVTFIGIL 353
Query: 56 DGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF 115
+ M F M +Y + P I G
Sbjct: 354 HACSHMGMVEKGRKYFASMTR-DY---------GIVPRIEHYG----------------- 386
Query: 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
C++D +++ G + A + ++ + N V W +++ G +H K A E
Sbjct: 387 ---------CMVDLFSRAGLLQEAHEFIMNMPIA-PNGVVWGALLGGCKVHKNIKLAEEA 436
Query: 176 FERMQKV 182
+ K+
Sbjct: 437 TRHLSKL 443
>gi|357127896|ref|XP_003565613.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 500
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 127/325 (39%), Positives = 202/325 (62%), Gaps = 4/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+FD+ ++++ WNVMI+G VK G L AR LF+ MP RNVVSWT +I Y +M +
Sbjct: 125 SVFDQTTDKDIFCWNVMISGYVKSGNLACARELFDVMPARNVVSWTTVIGAYAQMKQPVE 184
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ +FRRM E EP + +L+V A G V + +H + +RG + I + N +
Sbjct: 185 AVEVFRRMQVEEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVVRRGL-CWQIPLMNAI 243
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y K GC+ A+++FE +++K++V+WT++I+GFA+HG+G EA+E F RM+ + P
Sbjct: 244 IDMYVKLGCVRKAVEVFE--GMDQKSVVTWTTVIAGFALHGLGLEAIEMFRRMEMENVAP 301
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N VTFL++L+ACSH GL + G +F MV + + ++HYGC++D+LGRAG L +A+ +
Sbjct: 302 NDVTFLAILSACSHVGLTDLGRWYFKIMVSQYRIKQRVEHYGCMVDLLGRAGYLMEAQDL 361
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P + N +W LL A HG+ E+G++ ++E+E G+Y+L+ NI A R
Sbjct: 362 VQDMPFK-ANAAIWGALLAAARTHGDAELGKQALLHLIELEPHNSGNYILLSNIYAEQER 420
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ D +LR+ + +R PG S +
Sbjct: 421 WDDVSKLRKQMKDRGLRNVPGASSI 445
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 94/211 (44%), Gaps = 42/211 (19%)
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDIS-----------------------------VERK 151
HVS LI TY CG + SA +F+ + + +
Sbjct: 105 HVSASLIQTYFSCGRVASARSVFDQTTDKDIFCWNVMISGYVKSGNLACARELFDVMPAR 164
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQ-KVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
N+VSWT++I +A EAVE F RMQ + ++P+ V LSVL+AC G V+ G ++
Sbjct: 165 NVVSWTTVIGAYAQMKQPVEAVEVFRRMQVEEGIEPDGVALLSVLSACGDLGAVDLG-EW 223
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
+ V + I +IDM + G + +A +V G+ + +VV W T++ + H
Sbjct: 224 VHRFVVRRGLCWQIPLMNAIIDMYVKLGCVRKAVEVFEGMDQK--SVVTWTTVIAGFALH 281
Query: 271 G----NVEMGERVTRKILEMERGYGGDYVLM 297
G +EM R +EME D +
Sbjct: 282 GLGLEAIEMFRR-----MEMENVAPNDVTFL 307
>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 619
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 130/335 (38%), Positives = 205/335 (61%), Gaps = 14/335 (4%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD +P+R++++WN +++G GE+E LFEEMP RNV SW G+I GY R
Sbjct: 240 ELFDRMPDRDVMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYSWNGLIGGYVRNGLFKE 299
Query: 67 ALALFRRMVACEYTE----------PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN 116
AL F+RM+ E P++ T++AV A + GD+ + +H Y E G+
Sbjct: 300 ALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWVHVYAESIGYK 359
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
++ V N LID YAKCG I AL +F+ + V K++++W +II+G AMHG +A+ F
Sbjct: 360 G-NLFVGNALIDMYAKCGVIEKALDVFDGLDV--KDIITWNTIINGLAMHGHVADALSLF 416
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
ERM++ +P+ VTF+ +L+AC+H GLV GL F MV++ ++P I+HYGC++D+LGR
Sbjct: 417 ERMKRAGERPDGVTFVGILSACTHMGLVRNGLLHFQSMVDDYSIVPQIEHYGCMVDLLGR 476
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
AG +++A + +P E + V+W LLGAC + NVEM E ++++E+E G++V+
Sbjct: 477 AGLIDKAVDIVRKMPME-PDAVIWAALLGACRMYKNVEMAELALQRLIELEPNNPGNFVM 535
Query: 297 MYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ NI + R D RL+ + + K PG S++
Sbjct: 536 VSNIYKDLGRSQDVARLKVAMRDTGFRKVPGCSVI 570
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 129/284 (45%), Gaps = 57/284 (20%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
F+ D K+F E+ ++N+ W ++ V ++ AR LF+ P R+VV W ++ GY
Sbjct: 172 FVADAYKVFAEMRDKNVFAWTAIVAAHVACRDMVSARRLFDLAPQRDVVLWNVVVSGYIE 231
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+ A LF RM + DV +
Sbjct: 232 LGDMVAARELFDRM---------------------PDRDVMSW----------------- 253
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
N ++ YA G + S +KLFE++ V +N+ SW +I G+ +G+ KEA+E F+RM
Sbjct: 254 ---NTVLSGYATNGEVESFVKLFEEMPV--RNVYSWNGLIGGYVRNGLFKEALECFKRML 308
Query: 181 KV-----------VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC 229
+ V+ PN T ++VL ACS G +E G K+ E ++
Sbjct: 309 VLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMG-KWVHVYAESIGYKGNLFVGNA 367
Query: 230 LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
LIDM + G +E+A V G+ ++ +++ W T++ + HG+V
Sbjct: 368 LIDMYAKCGVIEKALDVFDGL--DVKDIITWNTIINGLAMHGHV 409
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 126/299 (42%), Gaps = 26/299 (8%)
Query: 24 ITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPS 83
IT + G + AR +F++ N +W + GY + N + LF RM P+
Sbjct: 61 ITACARLGGIRRARRVFDKTAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAG-ASPN 119
Query: 84 EITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIF--SALK 141
T V + + + +H KRGF + + V LI Y+ G +F A K
Sbjct: 120 CFTFPMVVKSCATANAAKEGEEVHCVVAKRGFKS-NTFVGCALIHMYSLRGGVFVADAYK 178
Query: 142 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHG 201
+F ++ KN+ +WT+I+ A H ++ V + R+ + + + V + V++
Sbjct: 179 VFAEM--RDKNVFAWTAIV---AAHVACRDMV-SARRLFDLAPQRDVVLWNVVVSGYIEL 232
Query: 202 GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWR 261
G + + FD+M + D+ + ++ G +E K+ +P + NV W
Sbjct: 233 GDMVAARELFDRMPDR-----DVMSWNTVLSGYATNGEVESFVKLFEEMP--VRNVYSWN 285
Query: 262 TLLGACSFHGNVEMGERVTRKIL---EMERGYGGDYVLMYN------ILAGVWRYGDAE 311
L+G +G + +++L E E G D V++ N +L R GD E
Sbjct: 286 GLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLE 344
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+V+ I A+ G I A ++F+ + + N +W ++ G+A + V F RM
Sbjct: 55 YVTPSFITACARLGGIRRARRVFDKTA--QPNGATWNAMFRGYAQANCHLDVVVLFARMH 112
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEG 207
+ PN TF V+ +C+ +EG
Sbjct: 113 RAGASPNCFTFPMVVKSCATANAAKEG 139
>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 129/327 (39%), Positives = 202/327 (61%), Gaps = 5/327 (1%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
+LFD +PE++LV+ M+T K GEL+ AR LF+ M R+ V W +IDGYT+
Sbjct: 112 AQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMP 171
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
N AL LFRRM+ + +P+E+T+L+V A Q G + + + +H Y E G F++HV
Sbjct: 172 NEALVLFRRMLKAK-AKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQ-FNVHVGT 229
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
L+D Y+KCG + A +F+ I + K++V+W S+I G+AMHG +EA++ F+ M ++ L
Sbjct: 230 ALVDMYSKCGSLEDARLVFDKI--DDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGL 287
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
P +TF+ +L+AC H G V EG F+KM +E + P I+HYGC++++LGRAG +EQA
Sbjct: 288 HPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAY 347
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
++ + E + V+W TLLGAC HG + +GE++ +++ G Y+L+ NI A V
Sbjct: 348 ELVKNMNIE-PDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAV 406
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
+ RLR ++ + K PG S +
Sbjct: 407 GNWDGVARLRTMMKDSGVKKEPGCSSI 433
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 128/330 (38%), Positives = 202/330 (61%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D +LFD++PE+++V+W M+ G K GE + A+ +F+ MP +++ +W +I Y +
Sbjct: 288 VEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQC 347
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ AL LF + + +P E+T+++ A Q G + IH Y +K+G + H
Sbjct: 348 GKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMK-LNCH 406
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
++ LID Y KCG + AL +F SVERK++ W+++I+G AMHG GK+A+ F +MQ+
Sbjct: 407 LTTSLIDMYCKCGDLQKALMVFH--SVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQE 464
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPN VTF ++L ACSH GLVEEG FF++M VLP +KHY C++D+LGRAG LE
Sbjct: 465 DKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLE 524
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++ +P VW LLGAC+ H NV + E+ +++E+E G G YVL+ NI
Sbjct: 525 EAVELIEKMPMA-PAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIY 583
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ LR+++ + K PG S +
Sbjct: 584 AKAGKWDRVSGLRKLMRDVGLKKEPGCSSI 613
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 129/257 (50%), Gaps = 10/257 (3%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
FD L+T L + L+YA+ +F+++P N+ +W +I Y + + +
Sbjct: 64 FFDPFSASRLIT----AAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQS 119
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L +F RM+ P + T + A + ++ + HG K + + + N LI
Sbjct: 120 LLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGS-DVFILNSLI 178
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
YAKCG + ++F +++ R+++VSW S+I+ F G +EA+E F+ M+ +KPN
Sbjct: 179 HFYAKCGELGLGYRVF--VNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPN 236
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+T + VL+AC+ E G ++ +E + + ++DM + G +E A+++
Sbjct: 237 GITMVGVLSACAKKSDFEFG-RWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLF 295
Query: 248 SGIPSEITNVVVWRTLL 264
+P + ++V W T+L
Sbjct: 296 DKMPEK--DIVSWTTML 310
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 146/347 (42%), Gaps = 72/347 (20%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
G ++F +P R++V+WN MIT V+ G E A LF+EM +NV
Sbjct: 190 GYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNV---------------- 233
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
+P+ IT++ V A + D + +H Y E+ + +SN
Sbjct: 234 ----------------KPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGE-SLTLSN 276
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFA-------------------- 164
++D Y KCG + A +LF+ + K++VSWT+++ G+A
Sbjct: 277 AMLDMYTKCGSVEDAKRLFDKMP--EKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDI 334
Query: 165 -----------MHGMGKEAVENFERMQ-KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
G KEA+E F +Q KP+ VT +S L+AC+ G ++ G +
Sbjct: 335 AAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLG-GWIH 393
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
+++ + + LIDM + G L++A V + E +V VW ++ + HG+
Sbjct: 394 VYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSV--ERKDVFVWSAMIAGLAMHGH 451
Query: 273 VEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319
+ + K+ E + V NIL G E R ++
Sbjct: 452 GKDAIALFSKM--QEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQ 496
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 253 bits (647), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 129/327 (39%), Positives = 202/327 (61%), Gaps = 5/327 (1%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
+LFD +PE++LV+ M+T K GEL+ AR LF+ M R+ V W +IDGYT+
Sbjct: 178 AQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMP 237
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
N AL LFRRM+ + +P+E+T+L+V A Q G + + + +H Y E G F++HV
Sbjct: 238 NEALVLFRRMLKAK-AKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQ-FNVHVGT 295
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
L+D Y+KCG + A +F+ I + K++V+W S+I G+AMHG +EA++ F+ M ++ L
Sbjct: 296 ALVDMYSKCGSLEDARLVFDKI--DDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGL 353
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
P +TF+ +L+AC H G V EG F+KM +E + P I+HYGC++++LGRAG +EQA
Sbjct: 354 HPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAY 413
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
++ + E + V+W TLLGAC HG + +GE++ +++ G Y+L+ NI A V
Sbjct: 414 ELVKNMNIE-PDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAV 472
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
+ RLR ++ + K PG S +
Sbjct: 473 GNWDGVARLRTMMKDSGVKKEPGCSSI 499
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 123/270 (45%), Gaps = 38/270 (14%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G L+Y+ +LF +V WT II G+ AL + +M+ + EP+ T
Sbjct: 76 GRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLT-QGVEPNAFT---- 130
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS--- 147
F +I + + + +H K GF++ ++V L+D YA+ G + SA +LF+ +
Sbjct: 131 FSSILKLCPIEPGKALHSQAVKLGFDS-DLYVRTGLLDVYARGGDVVSAQQLFDTMPEKS 189
Query: 148 --------------------------VERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+E ++ V W +I G+ +GM EA+ F RM K
Sbjct: 190 LVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLK 249
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KPN VT LSVL+AC G +E G ++ +E + ++ L+DM + G LE
Sbjct: 250 AKAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQFNVHVGTALVDMYSKCGSLE 308
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHG 271
A V I + +VV W +++ + HG
Sbjct: 309 DARLVFDKIDDK--DVVAWNSMIVGYAMHG 336
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 71/146 (48%), Gaps = 9/146 (6%)
Query: 129 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR 188
+YA G + ++ LF + ++ WT+II G A+ G+ ++A+ + +M ++PN
Sbjct: 71 SYASLGRLDYSVALFG--RTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNA 128
Query: 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
TF S+L C +E G + V + D+ L+D+ R G + A+++
Sbjct: 129 FTFSSILKLCP----IEPGKALHSQAV-KLGFDSDLYVRTGLLDVYARGGDVVSAQQLFD 183
Query: 249 GIPSEITNVVVWRTLLGACSFHGNVE 274
+P + ++V +L + HG ++
Sbjct: 184 TMPEK--SLVSLTAMLTCYAKHGELD 207
>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 518
Score = 253 bits (647), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 135/326 (41%), Positives = 198/326 (60%), Gaps = 6/326 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
KLFDE+P+R+LV+WNVMIT K GE+E AR LF+E P +++VSW +I GY N +
Sbjct: 194 KLFDEMPKRDLVSWNVMITVYTKHGEMESARRLFDEAPMKDIVSWNALIGGYVLRNLNRE 253
Query: 67 ALALFRRMVACEYTE-PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
AL LF M C E P E+T+L++ A GD+ + + +H + + N
Sbjct: 254 ALELFDEM--CGVGECPDEVTMLSLLSACADLGDLESGEKVHAKIIEMNKGKLSTLLGNA 311
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
L+D YAKCG I A+++F I K++VSW S+ISG A HG +E++ F M+ +
Sbjct: 312 LVDMYAKCGNIGKAVRVFWLI--RDKDVVSWNSVISGLAFHGHAEESLGLFREMKMTKVC 369
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
P+ VTF+ VL ACSH G V+EG ++F M + ++ P I+H GC++DMLGRAG L++A
Sbjct: 370 PDEVTFVGVLAACSHAGNVDEGNRYFHLMKNKYKIEPTIRHCGCVVDMLGRAGLLKEAFN 429
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
+ + E N +VWR+LLGAC HG+VE+ +R ++L M GDYVL+ N+ A
Sbjct: 430 FIASMKIE-PNAIVWRSLLGACKVHGDVELAKRANEQLLRMRGDQSGDYVLLSNVYASQG 488
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
+ AE +R+++D+ K G S V
Sbjct: 489 EWDGAENVRKLMDDNGVTKNRGSSFV 514
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 121/259 (46%), Gaps = 45/259 (17%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
N+V N ++ K G+L+ A +F++ +VV+W+ +I GY + + A LF M
Sbjct: 141 NVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEM- 199
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
KR ++ N +I Y K G
Sbjct: 200 -----------------------------------PKRDLVSW-----NVMITVYTKHGE 219
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ SA +LF++ + K++VSW ++I G+ + + +EA+E F+ M V P+ VT LS+L
Sbjct: 220 MESARRLFDEAPM--KDIVSWNALIGGYVLRNLNREALELFDEMCGVGECPDEVTMLSLL 277
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+AC+ G +E G K K++E + L+DM + G + +A +V I +
Sbjct: 278 SACADLGDLESGEKVHAKIIEMNKGKLSTLLGNALVDMYAKCGNIGKAVRVFWLIRDK-- 335
Query: 256 NVVVWRTLLGACSFHGNVE 274
+VV W +++ +FHG+ E
Sbjct: 336 DVVSWNSVISGLAFHGHAE 354
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 96/219 (43%), Gaps = 18/219 (8%)
Query: 105 LIHGYGEKRGF-NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 163
+++G GF + + ++ A I AL++F I + + W + I G
Sbjct: 25 IVNGLTSNVGFLRKLVLTTAMSMVGPNATSAVIRYALQMFAQIP--QPDTFMWNTYIRGS 82
Query: 164 AMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD 223
+ AV + +M + +KP+ TF VL AC+ V G +++ +
Sbjct: 83 SQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTKLFWVNTGSAVHGRVL-RLGFGSN 141
Query: 224 IKHYGCLIDMLGRAGRLEQAEKVASGI--PSEITNVVVWRTLLGACSFHGNVEMGERVTR 281
+ L+ + G L KVA+ I S+ +VV W L+ + G++ + ++
Sbjct: 142 VVVRNTLLVFHAKCGDL----KVATDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFD 197
Query: 282 KILEMERGYGGDYVLMYNILAGVW-RYGDAERLRRVVDE 319
++ + + ++ +N++ V+ ++G+ E RR+ DE
Sbjct: 198 EMPKRD-------LVSWNVMITVYTKHGEMESARRLFDE 229
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 253 bits (646), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 131/329 (39%), Positives = 198/329 (60%), Gaps = 5/329 (1%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
D ++FDE+P+R+++TW ++ G GEL AR LF+ MP RN VSW ++ GY
Sbjct: 210 DAKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRF 269
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
N AL F M+ + +P+E ++++ A G + + IH Y +K ++S
Sbjct: 270 YNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRI-LLSSNIS 328
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
LID YAKCG I A ++F+ + +++L++WTS+ISG +MHG+G E + F M
Sbjct: 329 TALIDMYAKCGRIDCARRVFDGL--HKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEG 386
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
KP+ +T L VLN CSH GLVEEGL F M+ ++P ++HYGCLID+LGRAGRLE A
Sbjct: 387 FKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESA 446
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERG-YGGDYVLMYNILA 302
+ +P E +VV WR LL AC HG+V++GER+ I E+ G +GG YVL+ N+ A
Sbjct: 447 FEAIKSMPME-PDVVAWRALLSACRIHGDVDLGERIINHIAELCPGSHGGGYVLLSNLYA 505
Query: 303 GVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ ++ ++R+ + +R + PG S +
Sbjct: 506 SMGQWESVTKVRKAMSQRGSEGCPGCSWI 534
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 129/330 (39%), Positives = 202/330 (61%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + +LFDE+PERNLV+WN M+ G VK G +E A LF EMPCR+VVSW ++ Y +
Sbjct: 308 IDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQC 367
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ N ALALF +M A +P+E T++++ A G + +H Y I
Sbjct: 368 GKPNEALALFDQMRAVG-VKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSI- 425
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V L+D YAKCG I A ++F ++E K++++W +II+G A+HG KEA + F+ M++
Sbjct: 426 VGTALVDMYAKCGKISLATQVFN--AMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKE 483
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++PN +TF+++L+ACSH G+V+EG K D M + P ++HYGC+ID+L RAG LE
Sbjct: 484 AGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLE 543
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++ +P E N LLG C HGN E+GE V ++++ ++ + G Y+L+ NI
Sbjct: 544 EAMELIGTMPME-PNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIY 602
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ DA ++R ++ K PG S++
Sbjct: 603 AAAKKWDDARKVRNLMKVNGISKVPGVSVI 632
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 156/321 (48%), Gaps = 56/321 (17%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L +LF+ R++V+WN MI G VK E+ +AR +F+ M CR+V+SW +I+GY +
Sbjct: 246 LGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIV 305
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ + A LF M +R ++
Sbjct: 306 GKIDEAKRLFDEM------------------------------------PERNLVSW--- 326
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
N ++ + KCG + A LF ++ +++VSW S+++ +A G EA+ F++M+
Sbjct: 327 --NSMLAGFVKCGNVEDAFGLFSEMPC--RDVVSWNSMLACYAQCGKPNEALALFDQMRA 382
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFF----DKMVEECEVLPDIKHYGCLIDMLGRA 237
V +KP T +S+L+AC+H G +++GL D +E ++ L+DM +
Sbjct: 383 VGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGT-----ALVDMYAKC 437
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297
G++ A +V + + S+ +V+ W T++ + HGNV+ +++ +++ E G + +
Sbjct: 438 GKISLATQVFNAMESK--DVLAWNTIIAGMAIHGNVKEAQQLFKEM--KEAGVEPNDITF 493
Query: 298 YNILAGVWRYGDAERLRRVVD 318
IL+ G + ++++D
Sbjct: 494 VAILSACSHAGMVDEGQKLLD 514
>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Vitis vinifera]
Length = 635
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 133/330 (40%), Positives = 201/330 (60%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+++ LF+++P+R++V+W M+ G K GE++ AR LF+EMP R+V+S ++ GY +
Sbjct: 269 MENAHHLFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQN 328
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL F M++ + P T+L AI Q G +H Y E GF +
Sbjct: 329 GHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVALHCYIEDNGF-SLSEK 387
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LID YAKCG I +AL +FEDI + K++ W +II G A+HG+G+ A E F M+K
Sbjct: 388 LGVALIDMYAKCGSIDNALSVFEDI--DDKSIDHWNAIIGGLAIHGLGEVAFELFMEMEK 445
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ +KP+ +TF+ VLNAC+H GLV+EGL F+ M +V P ++HYGC++D+LGRAG +E
Sbjct: 446 LFVKPDDITFIGVLNACNHAGLVKEGLMCFELMRRVHKVEPKLQHYGCMVDILGRAGHVE 505
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A+K +P E N VVWRTLL AC H N +GE V + ++ ++ YVL+ NI
Sbjct: 506 EAKKFVEKMPIE-PNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSYNPSSYVLLSNIY 564
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
AG + D R+R ++ +R+ K PG S +
Sbjct: 565 AGFGMWNDVYRIRMMMKQRDLKKIPGCSQI 594
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 139/286 (48%), Gaps = 22/286 (7%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYTRMNRS 64
+LFD + +R+ V++N MI G VK G ++ AR LF+ MP +N++SW +I GY R
Sbjct: 178 QLFDRMMKRDSVSFNSMIDGYVKHGMVKSARELFDVMPMEQKNLISWNSMISGYARSEEG 237
Query: 65 -NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
A LF M + I+ ++ + G + N + KR ++ +
Sbjct: 238 LRVAWELFEEM-----PKRDLISWNSMIDGCVKCGKMENAHHLFNQMPKRDVVSW----A 288
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKV 182
N ++D YAK G I A LF+++ ++++S ++++G+ +G EA+ F M +
Sbjct: 289 N-MVDGYAKLGEIDIARGLFDEMP--ERDVISCNAMMAGYVQNGHLMEALNFFHDMLSRK 345
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
L P+ T L L+A + G +EG+ + + L + K LIDM + G ++
Sbjct: 346 ELFPDNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSE-KLGVALIDMYAKCGSIDN 404
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
A V I + ++ W ++G + HG +GE +EME+
Sbjct: 405 ALSVFEDIDDK--SIDHWNAIIGGLAIHG---LGEVAFELFMEMEK 445
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 127/282 (45%), Gaps = 31/282 (10%)
Query: 33 LEYARSLF-------EEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEI 85
+E+AR LF + N W II ++ A +F M+ +
Sbjct: 65 VEFARYLFMSRHFGRKHRKQDNPFLWNAIIKSFSHGEDPREAFVIFNLMLENGVC-VDKF 123
Query: 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFED 145
+ V A + G ++ IHG + + + + NCL+ Y +CGC+ A +LF+
Sbjct: 124 SFSLVLKACSRLGLIKEGMQIHGLLGRMEIGS-DVFLQNCLMCLYLRCGCLGIARQLFD- 181
Query: 146 ISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVE 205
+ +++ VS+ S+I G+ HGM K A E F+ M + + N +++ S+++ + E
Sbjct: 182 -RMMKRDSVSFNSMIDGYVKHGMVKSARELFDVMP--MEQKNLISWNSMISGYARS---E 235
Query: 206 EGLKFFDKMVEECEVLP--DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTL 263
EGL+ ++ EE +P D+ + +ID + G++E A + + +P +VV W +
Sbjct: 236 EGLRVAWELFEE---MPKRDLISWNSMIDGCVKCGKMENAHHLFNQMPKR--DVVSWANM 290
Query: 264 LGACSFHGNV--------EMGERVTRKILEMERGYGGDYVLM 297
+ + G + EM ER M GY + LM
Sbjct: 291 VDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGHLM 332
>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 823
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 130/313 (41%), Positives = 200/313 (63%), Gaps = 5/313 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFDE P ++LV+WNVMIT K G++ AR LF+++P R+VVSW +I GY R A
Sbjct: 170 LFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHA 229
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHG-YGEKRGFNAFHIHVSNCL 126
L LF +M +P +T+L++ A +GD+ Q +H + N F + + N L
Sbjct: 230 LELFEQMQRMG-EKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNAL 288
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YAKCG + SA ++F S+ K++ +W SI+ G A+HG E+++ FE+M K ++P
Sbjct: 289 IDMYAKCGSMKSAHEVF--WSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRP 346
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +TF++VL ACSHGG+V++G +FF+ M + V P+IKHYGC++DMLGRAG L++A +
Sbjct: 347 DEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEF 406
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ E N V+WRTLL AC HG +E+ + R++L+ GDYVL+ NI A V
Sbjct: 407 IDTMKCE-PNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGE 465
Query: 307 YGDAERLRRVVDE 319
+ +E++R+++D+
Sbjct: 466 WFGSEKMRKLMDD 478
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 109/262 (41%), Gaps = 48/262 (18%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E + N +I G L A +LF+ + V+W+ +I G R A LF
Sbjct: 114 ESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDE 173
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
+ W N +I YAK
Sbjct: 174 CPVKDLVS-------------W----------------------------NVMITAYAKR 192
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + A +LF+ V +++VSW +ISG+ G A+E FE+MQ++ KP+ VT LS
Sbjct: 193 GDMALARELFD--QVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLS 250
Query: 194 VLNACSHGGLVEEGLKFFDKMVE--ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
+L+AC+ G ++ G + + + P + LIDM + G ++ A +V +
Sbjct: 251 LLSACADSGDLDVGQRLHSSLSDMFSRNGFP-VVLGNALIDMYAKCGSMKSAHEVFWSMR 309
Query: 252 SEITNVVVWRTLLGACSFHGNV 273
+ +V W +++G + HG+V
Sbjct: 310 DK--DVSTWNSIVGGLALHGHV 329
>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 530
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 131/332 (39%), Positives = 209/332 (62%), Gaps = 7/332 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYT 59
L D K+FDE+ +++ WN ++ G K GE++ ARSL E MPC RN VSWT +I GY
Sbjct: 167 LGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYA 226
Query: 60 RMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
+ R++ A+ +F+RM+ E EP E+T+LAV A G + + I Y + RG N
Sbjct: 227 KSGRASEAIEVFQRMLM-ENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRA- 284
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+ ++N +ID YAK G I AL +FE V +N+V+WT+II+G A HG G EA+ F RM
Sbjct: 285 VSLNNAVIDMYAKSGNITKALDVFE--CVNERNVVTWTTIIAGLATHGHGAEALAMFNRM 342
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
K ++PN VTF+++L+ACSH G V+ G + F+ M + + P+I+HYGC+ID+LGRAG+
Sbjct: 343 VKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGK 402
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
L +A++V +P + N +W +LL A + H ++E+GER +++++E G+Y+L+ N
Sbjct: 403 LREADEVIKSMPFK-ANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNSGNYMLLAN 461
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ + + R+ ++ +R ++ K G S +
Sbjct: 462 LYSNLGRWDESRMMRNMMKGIGVKKMAGESSI 493
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 124/276 (44%), Gaps = 39/276 (14%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG---ALALFRRMVACEYTEPSEITI 87
G L YA S+F PC N +I + ++ N A+ ++R++ A +P T
Sbjct: 61 GHLRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAHSIAITVYRKLWAL-CAKPDTFTF 119
Query: 88 LAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS 147
V + DV + IHG GF++ +HV LI Y CG + A K+F+++
Sbjct: 120 PFVLKIAVRVSDVWFGRQIHGQVVVFGFDS-SVHVVTGLIQMYFSCGGLGDARKMFDEML 178
Query: 148 VER-------------------------------KNLVSWTSIISGFAMHGMGKEAVENF 176
V+ +N VSWT +ISG+A G EA+E F
Sbjct: 179 VKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVF 238
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
+RM ++P+ VT L+VL+AC+ G +E G + V+ + + +IDM +
Sbjct: 239 QRMLMENVEPDEVTLLAVLSACADLGSLELGERIC-SYVDHRGMNRAVSLNNAVIDMYAK 297
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
+G + +A V + NVV W T++ + HG+
Sbjct: 298 SGNITKALDVFECVNER--NVVTWTTIIAGLATHGH 331
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 125/324 (38%), Positives = 206/324 (63%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FD + ERN+V+WN ++ G K G L AR LF+ MP R+V+SWT +I GY++ ++ + A
Sbjct: 274 VFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDA 333
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
+ LF+ M+A + +P ++T+ +V A G + +H Y + G A I+V N LI
Sbjct: 334 VKLFQEMMAAK-VKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQA-DIYVGNSLI 391
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y KCG + AL++F ++ K+ VSWTS+ISG A++G A++ F +M + ++P
Sbjct: 392 DMYCKCGMVEKALEVFH--RMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPT 449
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
TF+ +L AC+H GLV +GL++F+ M ++P +KHYGC++D+L R+G +++A +
Sbjct: 450 HGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFI 509
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P + +VVVWR LL AC HGNV + E T+++LE++ G+YVL+ N AGV R+
Sbjct: 510 KKMPI-VPDVVVWRILLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRW 568
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
DA ++R ++++ + K G S +
Sbjct: 569 DDAMKMRELMEDSDVQKPSGSSSI 592
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 126/250 (50%), Gaps = 13/250 (5%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
L A +F ++ C +V W +I G ++ + A+ ++ RM T + +T++ +F
Sbjct: 66 LHKAHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGIT-GNNLTLIFLFK 124
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
A + D+ + + IH + K GF ++ + VSN LI YA CG + A K+F+ + ++
Sbjct: 125 ACARVSDIVSGRKIHVHALKLGFESY-LFVSNALIHMYAMCGQLGFAQKMFD--GMLDRD 181
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
LVSW ++I G++ + KE + F+ M +K + VT + ++ ACSH G E F D
Sbjct: 182 LVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWE----FAD 237
Query: 213 KMV---EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
MV +E + D+ LIDM GR E A+ V + N+V W L+ +
Sbjct: 238 SMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRER--NIVSWNALVMGHAK 295
Query: 270 HGNVEMGERV 279
GN+ ++
Sbjct: 296 VGNLTAARKL 305
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 135/289 (46%), Gaps = 38/289 (13%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E L N +I G+L +A+ +F+ M R++VSW +I GY++ N+ L LF
Sbjct: 148 ESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDA 207
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTY--- 130
M A + +T++ + A GD + Y ++ +++ N LID Y
Sbjct: 208 MTAAN-IKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLE-IDVYLGNTLIDMYGRR 265
Query: 131 ----------------------------AKCGCIFSALKLFEDISVERKNLVSWTSIISG 162
AK G + +A KLF+++ +++++SWTS+I+G
Sbjct: 266 SLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNM--PKRDVISWTSMITG 323
Query: 163 FAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP 222
++ +AV+ F+ M +KP++VT SVL+AC+H G ++ G + V
Sbjct: 324 YSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVH-HYIRRHGVQA 382
Query: 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
DI LIDM + G +E+A +V + + + V W +++ + +G
Sbjct: 383 DIYVGNSLIDMYCKCGMVEKALEVFHRMKDK--DSVSWTSVISGLAVNG 429
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 123/330 (37%), Positives = 209/330 (63%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D ++F+E+ ER+ V+WN +I+G V+ G++ AR++FEEM + + SWT I+ GY R+
Sbjct: 168 LDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARI 227
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL FRRM EP EI++++V P Q G + + IH Y +K GF +I
Sbjct: 228 GCYADALEFFRRMQMVG-IEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGF-LRNIC 285
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LI+ YAKCG I +LF+ + + ++++SW+++I G A HG +EA+E F+ MQK
Sbjct: 286 VCNALIEMYAKCGSIDQGRRLFDQM--KERDVISWSTMIVGLANHGRAREAIELFQEMQK 343
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++P+ +TF+ +L AC+H GL+ EGL++F+ M + + P ++HYGCL+++LG +GRL+
Sbjct: 344 AKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLD 403
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
QA ++ +P + + +W +LL +C HGN+++ +LE+E G+YVL+ N+
Sbjct: 404 QALELVKKMPRK-PDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLY 462
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + ++ R+R+++ ++ K PG S +
Sbjct: 463 ADLGKWDGVSRMRKLMRSKSMKKTPGCSSI 492
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 138/302 (45%), Gaps = 41/302 (13%)
Query: 7 KLFDELPERNLVTWNVMITGLVK----WGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
K+ + + +L + ++T +V +GE EYA LF+ + N + +I Y
Sbjct: 32 KIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHNK 91
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNC----QLIHGYGEKRGFNAF 118
A+ ++++M+ + E FP + ++ C + +HG+ K G +
Sbjct: 92 VYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSN 151
Query: 119 HIHVSNCLIDTYAKCGCIFSALKLFEDIS-----------------------------VE 149
+ V N L++ Y KC + A ++FE+++ ++
Sbjct: 152 TV-VENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQ 210
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
K + SWT+I+SG+A G +A+E F RMQ V ++P+ ++ +SVL C+ G +E G K
Sbjct: 211 DKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELG-K 269
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
+ ++ L +I LI+M + G ++Q ++ + +V+ W T++ +
Sbjct: 270 WIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKER--DVISWSTMIVGLAN 327
Query: 270 HG 271
HG
Sbjct: 328 HG 329
>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 207/325 (63%), Gaps = 4/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FD++ RN +WNVM+ G +K GELE A+ +F EMP R+ VSW+ +I G++ N
Sbjct: 360 EIFDKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNE 419
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
+ + FR ++ E P+E+++ V A Q+G + +HG+ EK G+ ++ + V+N L
Sbjct: 420 SFSYFRELLRAE-MRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGY-SWIVSVNNAL 477
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y++CG + A +FE + E++++VSWTS+I+G AMHG G+EA+ F M + + P
Sbjct: 478 IDMYSRCGNVPMARLVFEGMQ-EKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMP 536
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ ++F+S+L ACSH GL++EG +F KM + P ++HYGC++D+ GR+G+L++A
Sbjct: 537 DEISFISLLYACSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSF 596
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P T +VWRTLLGACS HGN+E+ E+V +++ E++ GD VL+ N+ A +
Sbjct: 597 ICQMPIPPT-AIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNVYATAGK 655
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ D +R+ + + K SLV
Sbjct: 656 WKDVASIRKSMIVQRIKKITAWSLV 680
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 77/354 (21%), Positives = 142/354 (40%), Gaps = 78/354 (22%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
L YAR L P + + ++ GY+ + + ++A+F M+ + P + V
Sbjct: 222 LPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVK 281
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
A +R +H K G ++ H+ V+ LI Y +CGC+ A K+F+++ + N
Sbjct: 282 AAANFRSLRTGFQMHCQALKHGLDS-HLFVATTLIGMYGECGCVGFARKVFDEMP--QPN 338
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQ-------KVVLK------------------PN 187
LV+W ++++ A E F++M V+L P+
Sbjct: 339 LVAWNAVVTACFRGNDVSGAREIFDKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPH 398
Query: 188 R--VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD---------------------- 223
R V++ +++ SH G E +F +++ E+ P+
Sbjct: 399 RDDVSWSTMIVGFSHNGSFNESFSYFRELL-RAEMRPNEVSLTGVLSACSQSGAFEFGKT 457
Query: 224 -------------IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
+ LIDM R G + A V G+ E ++V W +++ + H
Sbjct: 458 LHGFVEKSGYSWIVSVNNALIDMYSRCGNVPMARLVFEGM-QEKRSIVSWTSMIAGLAMH 516
Query: 271 GNVEMGERVTRKILEM-ERGYGGDYVLMYNIL-----AGVWRYGDA--ERLRRV 316
G+ GE R EM E G D + ++L AG+ + G+ +++RV
Sbjct: 517 GH---GEEAIRIFNEMTESGVMPDEISFISLLYACSHAGLIKEGEGYFSKMKRV 567
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 134/332 (40%), Positives = 202/332 (60%), Gaps = 6/332 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L ++F+++P + ++ W M++G V G+L+ AR LFE P R+VV WT +I+GY +
Sbjct: 284 LSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQF 343
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
NR + A+ALFR M + P T++A+ Q G + + IHGY ++ +
Sbjct: 344 NRFDDAVALFREM-QIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAV- 401
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V LI+ YAKCG I +L++F ++ K+ SWTSII G AM+G +A+E F M +
Sbjct: 402 VGTALIEMYAKCGFIEKSLEIFN--GLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQ 459
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KP+ +TF+ VL+ACSHGGLVEEG K F M ++ P ++HYGCLID+LGRAG+L+
Sbjct: 460 TGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLD 519
Query: 242 QAEKVASGIPSEITNVVV--WRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
+AE++ P+ V+V + LL AC HGNVEMGERV ++++ +E G + L+ N
Sbjct: 520 EAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLLAN 579
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
I A R+ D ++RR + + K PG S V
Sbjct: 580 IYASADRWEDVTKVRRKMKDLGVKKVPGCSSV 611
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 153/332 (46%), Gaps = 52/332 (15%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ + G ++ R +FEEMP R+VVSW +I GY + R A+ +FRRM
Sbjct: 171 NSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSL 230
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGY-GEKRGFNAFHIHVSNCLIDTYAKCGCIFSA 139
P+E T+++ A + + IH Y E+ GF I + N L+D Y KCG + A
Sbjct: 231 RPNEATVVSTLSACIALKMLELGKEIHRYVREQLGFT---IKIGNALVDMYCKCGHLSIA 287
Query: 140 LKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER--------------------- 178
++F D+ + K ++ WTS++SG+ G EA E FER
Sbjct: 288 REIFNDMPI--KTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNR 345
Query: 179 ----------MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG 228
MQ + P+R T +++L C+ G +E+G K+ ++E +++ D
Sbjct: 346 FDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQG-KWIHGYIDENKIMIDAVVGT 404
Query: 229 CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM-- 286
LI+M + G +E++ ++ +G+ + T W +++ + +G T K LE+
Sbjct: 405 ALIEMYAKCGFIEKSLEIFNGLKEKDT--ASWTSIICGLAMNGK-------TSKALELFA 455
Query: 287 ---ERGYGGDYVLMYNILAGVWRYGDAERLRR 315
+ G D + +L+ G E R+
Sbjct: 456 EMVQTGVKPDDITFIGVLSACSHGGLVEEGRK 487
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 142/289 (49%), Gaps = 18/289 (6%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G L YA +F + + + +I +T+ A+ LFR++ E P T V
Sbjct: 80 GNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLRE-EGLSPDNFTYPFV 138
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
F AI G+VR + ++G+ K G F +V N L+D YA+ G + + ++FE++ +
Sbjct: 139 FKAIGCLGEVREGEKVYGFVVKSGLE-FDTYVCNSLMDMYAEVGRVQNLRQVFEEMP--Q 195
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
+++VSW +ISG+ ++AV+ F RM Q+ L+PN T +S L+AC ++E G K
Sbjct: 196 RDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELG-K 254
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
+ V E ++ IK L+DM + G L A ++ + +P I V+ W +++
Sbjct: 255 EIHRYVRE-QLGFTIKIGNALVDMYCKCGHLSIAREIFNDMP--IKTVICWTSMVS---- 307
Query: 270 HGNVEMGERVTRKILEMERGYGGDYVL---MYNILAGVWRYGDAERLRR 315
G V G+ + L ER D VL M N R+ DA L R
Sbjct: 308 -GYVNCGQLDEAREL-FERSPVRDVVLWTAMINGYVQFNRFDDAVALFR 354
>gi|242062638|ref|XP_002452608.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
gi|241932439|gb|EES05584.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
Length = 485
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 197/328 (60%), Gaps = 5/328 (1%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
D K+FD +P+R +VTWNV++ LV+ G+L+ A +F EMP RNVVSW II G+TR
Sbjct: 113 DARKVFDGMPDRTVVTWNVLLDALVRDGDLDAAWEVFVEMPQRNVVSWNTIIAGFTRNGW 172
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
+ A+ LF M P E T++ A+ G + + HGY +R F+ +
Sbjct: 173 AQEAVDLFVEMTVAYGLAPDEATMVGFVSAVRDIGLLGIGKSAHGYVLRREFS-LDGALG 231
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
LI Y +CG + +A F +SV KN+ WTS+I+GFA HG ++A+ F M++V
Sbjct: 232 VALISMYTRCGSMGAAHSCF--LSVTTKNVEHWTSLIAGFAAHGQPEKALRLFAEMRRVG 289
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
++PN VTF++VLNAC+HGGLV EG K+FD M + P I+HYGCL+D+LGRAG L++A
Sbjct: 290 IEPNGVTFVAVLNACNHGGLVSEGFKYFDLM-RSMGIRPMIQHYGCLVDLLGRAGFLKEA 348
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
+AS +P E V+W +LL AC HG+VEM E K+ + + +G YVL+ N A
Sbjct: 349 FNLASNLP-EDPGFVIWSSLLAACHSHGDVEMAELTASKLADAKPSHGSSYVLLSNTYAR 407
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
++ D R RR ++E K PG S +
Sbjct: 408 AKQWEDLRRTRRRMEEHGVTKKPGLSWI 435
>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
Length = 578
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 127/303 (41%), Positives = 199/303 (65%), Gaps = 5/303 (1%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
K GE++ A +F+EM R++ SW +I G+ + ++ AL+LF+RM + +P+EI++L
Sbjct: 152 KVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEALSLFKRM-EIDGFKPNEISVL 210
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
A Q GD + + IHGY + F+ + V N +ID YAKCG + A +FE +S
Sbjct: 211 GALSACAQLGDFKEGEKIHGYIKVERFD-MNAQVCNVVIDMYAKCGFVDKAYLVFESMSC 269
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
RK++V+W ++I FAMHG G +A+E FE+M + + P+ V++L+VL AC+HGGLVEEG
Sbjct: 270 -RKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVSYLAVLCACNHGGLVEEGF 328
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
+ F+ M E C V P++KHYG ++D+LGRAGRL +A + + +P+ + ++V+W+TLLGA
Sbjct: 329 RLFNSM-ENCGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSMPT-VPDIVLWQTLLGASR 386
Query: 269 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGR 328
H NVE+ E V+RK++EM + GD+VL+ N+ A R+ D R+R + R+ K PG
Sbjct: 387 THRNVEIAETVSRKLVEMGSNHCGDFVLLSNVYAARERWADVGRVREAMKNRDVKKVPGL 446
Query: 329 SLV 331
S +
Sbjct: 447 SYI 449
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 120/258 (46%), Gaps = 40/258 (15%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVA---------CEYTE 81
G L +A F ++ + W II G+ + A A ++ M++ C +
Sbjct: 53 GNLSFAILTFSQIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVL 112
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
+ +LA +I IH + ++GF A + + L+D YAK G I SA K
Sbjct: 113 KACARVLARLESIQ----------IHTHIVRKGFIADAL-LGTTLLDVYAKVGEIDSAEK 161
Query: 142 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHG 201
+F+++ ++++ SW ++ISGFA EA+ F+RM+ KPN ++ L L+AC+
Sbjct: 162 VFDEMV--KRDIASWNALISGFAQGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQL 219
Query: 202 GLVEEGLKF--------FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
G +EG K FD + C V +IDM + G +++A V +
Sbjct: 220 GDFKEGEKIHGYIKVERFDMNAQVCNV---------VIDMYAKCGFVDKAYLVFESMSCR 270
Query: 254 ITNVVVWRTLLGACSFHG 271
++V W T++ A + HG
Sbjct: 271 -KDIVTWNTMIMAFAMHG 287
>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
Length = 523
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 130/313 (41%), Positives = 200/313 (63%), Gaps = 5/313 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFDE P ++LV+WNVMIT K G++ AR LF+++P R+VVSW +I GY R A
Sbjct: 170 LFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHA 229
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHG-YGEKRGFNAFHIHVSNCL 126
L LF +M +P +T+L++ A +GD+ Q +H + N F + + N L
Sbjct: 230 LELFEQMQRMG-EKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNAL 288
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YAKCG + SA ++F S+ K++ +W SI+ G A+HG E+++ FE+M K ++P
Sbjct: 289 IDMYAKCGSMKSAHEVF--WSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRP 346
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +TF++VL ACSHGG+V++G +FF+ M + V P+IKHYGC++DMLGRAG L++A +
Sbjct: 347 DEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEF 406
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ E N V+WRTLL AC HG +E+ + R++L+ GDYVL+ NI A V
Sbjct: 407 IDTMKCE-PNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGE 465
Query: 307 YGDAERLRRVVDE 319
+ +E++R+++D+
Sbjct: 466 WFGSEKMRKLMDD 478
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 109/262 (41%), Gaps = 48/262 (18%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E + N +I G L A +LF+ + V+W+ +I G R A LF
Sbjct: 114 ESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDE 173
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
+ W N +I YAK
Sbjct: 174 CPVKDLVS-------------W----------------------------NVMITAYAKR 192
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + A +LF+ V +++VSW +ISG+ G A+E FE+MQ++ KP+ VT LS
Sbjct: 193 GDMALARELFD--QVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLS 250
Query: 194 VLNACSHGGLVEEGLKFFDKMVE--ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
+L+AC+ G ++ G + + + P + LIDM + G ++ A +V +
Sbjct: 251 LLSACADSGDLDVGQRLHSSLSDMFSRNGFP-VVLGNALIDMYAKCGSMKSAHEVFWSMR 309
Query: 252 SEITNVVVWRTLLGACSFHGNV 273
+ +V W +++G + HG+V
Sbjct: 310 DK--DVSTWNSIVGGLALHGHV 329
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 128/330 (38%), Positives = 202/330 (61%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + +LFDE+PERNLV+WN M++G VK G +E A LF EMPCR+VVSW ++ Y +
Sbjct: 113 IDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQC 172
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ N ALALF +M A +P+E T++++ A G + +H Y I
Sbjct: 173 GKPNEALALFDQMRAVG-VKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSI- 230
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V L+D YAKCG I A ++F ++E K++++W +II+G A+HG KEA + F+ M++
Sbjct: 231 VGTALVDMYAKCGKISLATQVFN--AMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKE 288
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++PN +TF+++L+ACSH G+V+EG K D M + P ++HY C+ID+L RAG LE
Sbjct: 289 ASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLE 348
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++ +P E N LLG C HGN E+GE V ++++ ++ + G Y+L+ NI
Sbjct: 349 EAMELIGTMPME-PNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIY 407
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ DA ++R ++ K PG S++
Sbjct: 408 AAAKKWDDARKVRNLMKVNGISKVPGVSVI 437
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 144/288 (50%), Gaps = 54/288 (18%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L +LF +R++V+WN MI G VK GE+ + R +F+ M CR+V+SW II+GY +
Sbjct: 51 LGAAKQLFSLCSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWNTIINGYAIV 110
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ + A LF M E +++ W
Sbjct: 111 GKIDEAKRLFDEM--------PERNLVS-----W-------------------------- 131
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
N ++ + KCG + A LF ++ +++VSW S+++ +A G EA+ F++M+
Sbjct: 132 --NSMLSGFVKCGNVEEAFGLFSEMPC--RDVVSWNSMLACYAQCGKPNEALALFDQMRA 187
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFF----DKMVEECEVLPDIKHYGCLIDMLGRA 237
V +KP T +S+L+AC+H G +++GL D +E ++ L+DM +
Sbjct: 188 VGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGT-----ALVDMYAKC 242
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
G++ A +V + + S+ +V+ W T++ + HG+V+ +++ +++ E
Sbjct: 243 GKISLATQVFNAMESK--DVLAWNTIIAGMAIHGHVKEAQQLFKEMKE 288
>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
Length = 523
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 130/313 (41%), Positives = 200/313 (63%), Gaps = 5/313 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFDE P ++LV+WNVMIT K G++ AR LF+++P R+VVSW +I GY R A
Sbjct: 170 LFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHA 229
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHG-YGEKRGFNAFHIHVSNCL 126
L LF +M +P +T+L++ A +GD+ Q +H + N F + + N L
Sbjct: 230 LELFEQMQRMG-EKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNAL 288
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YAKCG + SA ++F S+ K++ +W SI+ G A+HG E+++ FE+M K ++P
Sbjct: 289 IDMYAKCGSMKSAHEVF--WSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRP 346
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +TF++VL ACSHGG+V++G +FF+ M + V P+IKHYGC++DMLGRAG L++A +
Sbjct: 347 DEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCIVDMLGRAGLLKEAFEF 406
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ E N V+WRTLL AC HG +E+ + R++L+ GDYVL+ NI A V
Sbjct: 407 IDTMKCE-PNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGE 465
Query: 307 YGDAERLRRVVDE 319
+ +E++R+++D+
Sbjct: 466 WFGSEKMRKLMDD 478
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 109/262 (41%), Gaps = 48/262 (18%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E + N +I G L A +LF+ + V+W+ +I G R A LF
Sbjct: 114 ESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDE 173
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
+ W N +I YAK
Sbjct: 174 CPVKDLVS-------------W----------------------------NVMITAYAKR 192
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + A +LF+ V +++VSW +ISG+ G A+E FE+MQ++ KP+ VT LS
Sbjct: 193 GDMALARELFD--QVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLS 250
Query: 194 VLNACSHGGLVEEGLKFFDKMVE--ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
+L+AC+ G ++ G + + + P + LIDM + G ++ A +V +
Sbjct: 251 LLSACADSGDLDVGQRLHSSLSDMFSRNGFP-VVLGNALIDMYAKCGSMKSAHEVFWSMR 309
Query: 252 SEITNVVVWRTLLGACSFHGNV 273
+ +V W +++G + HG+V
Sbjct: 310 DK--DVSTWNSIVGGLALHGHV 329
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 126/330 (38%), Positives = 204/330 (61%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ ++FD +P+R++V+W +ITG +WG ++ AR +FE MP RN VSW +I Y +
Sbjct: 171 LEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQS 230
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
NR + A ALF RM E + ++ A G + + IHGY EK G
Sbjct: 231 NRLHEAFALFDRM-RLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIE-LDSK 288
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
++ +ID Y KCGC+ A ++F ++ +K + SW +I G AMHG G+ A+E F+ M++
Sbjct: 289 LATTVIDMYCKCGCLEKASEVFNELP--QKGISSWNCMIGGLAMHGKGEAAIELFKEMER 346
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++ P+ +TF++VL+AC+H GLVEEG +F M E + P ++H+GC++D+LGRAG LE
Sbjct: 347 EMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLE 406
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A K+ + +P + V L+GAC HGN E+GE++ +K++E+E G YVL+ N+
Sbjct: 407 EARKLINEMPVN-PDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLY 465
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ D ++R+++++R K PG S++
Sbjct: 466 ASAGRWEDVAKVRKLMNDRGVKKAPGFSMI 495
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 145/324 (44%), Gaps = 46/324 (14%)
Query: 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTE 81
+ + K G+L YA +F+++P + + I GY R + + ++ RM+ +
Sbjct: 59 IKFCAISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLH-KSVS 117
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
P++ T + A + + + IH + K GF A ++N LI Y + A +
Sbjct: 118 PNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNN-LIHMYVNFQSLEQARR 176
Query: 142 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE------------------------ 177
+F+++ ++++VSWTS+I+G++ G +A E FE
Sbjct: 177 VFDNMP--QRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLH 234
Query: 178 ---------RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG 228
R++ VVL ++ S+L+AC+ G +E+G K+ +E+ + D K
Sbjct: 235 EAFALFDRMRLENVVL--DKFVAASMLSACTGLGALEQG-KWIHGYIEKSGIELDSKLAT 291
Query: 229 CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
+IDM + G LE+A +V + +P + + W ++G + HG GE EMER
Sbjct: 292 TVIDMYCKCGCLEKASEVFNELPQK--GISSWNCMIGGLAMHGK---GEAAIELFKEMER 346
Query: 289 GY-GGDYVLMYNILAGVWRYGDAE 311
D + N+L+ G E
Sbjct: 347 EMVAPDGITFVNVLSACAHSGLVE 370
>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 532
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 130/326 (39%), Positives = 203/326 (62%), Gaps = 5/326 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
KLFDE P ++ V+WNVMIT K GE+ AR LF +P R+VVSW +I G+ R
Sbjct: 199 KLFDECPVKDHVSWNVMITAYAKRGEMAPARVLFNRIPERDVVSWNAMISGHVRCGSHVY 258
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHG-YGEKRGFNAFHIHVSNC 125
A+ LF +M +P +T+L++ A +GD+ + +H E F + + N
Sbjct: 259 AMELFEQMQRMG-QKPDVVTMLSLLSACADSGDIDVGRRLHSSLSEMFLRTGFTVILGNA 317
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
LID YAKCG + SAL++F + K++ +W SII G A+HG E+++ F++M K ++
Sbjct: 318 LIDMYAKCGSMKSALQVF--WVMRDKDVSTWNSIIGGLALHGHVLESIDVFKKMLKEKVR 375
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
P+ +TF++VL ACSHGG+V++G ++F+ M + P++KHYGC++DMLGRAG L++A +
Sbjct: 376 PDEITFVAVLIACSHGGMVDKGREYFNLMQHHYRIEPNVKHYGCMVDMLGRAGLLKEAFE 435
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
+ E N V+WRTLLGAC HG +E+ E R++L+ GDYVL+ NI A
Sbjct: 436 FIDTMKVE-PNSVIWRTLLGACRVHGEIELAEHANRQLLKARNDESGDYVLLSNIYASAG 494
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
+ ++E++R+++D+ K GR++V
Sbjct: 495 EWSESEKMRKLMDDSGVNKQAGRTVV 520
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 13/189 (6%)
Query: 92 PAIWQN-GDVRNCQLIHGYGEKRGFNAFHIHVSNCLI-DTYAKCGCIFSALKLFEDISVE 149
P +W+ +R + +H RGF + + L A G I A +F+ I
Sbjct: 12 PPLWRRCRSLRQIKQVHALMVLRGFLSDPSALRELLFASAVAVRGAIAHAYLVFDQIP-- 69
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV----LKPNRVTFLSVLNACSHGGLVE 205
R +L + ++I G A ++AV + RM + ++P+++TF VL AC+ G
Sbjct: 70 RPDLFMYNTLIRGAAHTAAPRDAVSLYARMARRGSCGGVRPDKITFPFVLRACTAMGAGG 129
Query: 206 EGLKFFDKMVEE-CEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
G + +V+ CE +++ LI M G L A + G E + V W ++
Sbjct: 130 TGAQVHAHVVKAGCESDAFVRN--ALIGMHASCGELGVASALFDGRARE--DAVAWSAMI 185
Query: 265 GACSFHGNV 273
C+ G++
Sbjct: 186 TGCARRGDI 194
>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 130/331 (39%), Positives = 204/331 (61%), Gaps = 2/331 (0%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L + LF+ +PER+L +WN MITGL++ G+L AR LF EMP +NV+SWT +I G +
Sbjct: 233 LLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQ 292
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
S AL +F RM++ +P++ T ++V A + Q +H K +
Sbjct: 293 EGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTF 352
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
VS LI+ Y+KCG + +A K+F+D +++LVSW II+ +A HG GKEA+ F+ M+
Sbjct: 353 VVS-ALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMR 411
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
K KP+ VT++ +L+ACSH GLVEEGLK+FD++V++ +L HY CL+D+ GRAGRL
Sbjct: 412 KSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRL 471
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
++A + ++ + VW LL C+ H NV++G++ +K+LE+E G Y+L+ NI
Sbjct: 472 KEAFGFIERLETK-PSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNI 530
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ +A R+R + ++ K PG S +
Sbjct: 531 YASTGKWREAARVRLKMKDKGLKKQPGCSWI 561
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 159/343 (46%), Gaps = 35/343 (10%)
Query: 1 FLKDGSKLFDEL-PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYT 59
+++ +LFD + ++N+VTW M+ G ++ ++ A LF EMP +NVVSW +IDGY
Sbjct: 113 MIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYA 172
Query: 60 RMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
+ R + A+ LF +M E + ++ V + Q G + + + +R ++
Sbjct: 173 QNGRIDSAMYLFEKM-----PERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWT 227
Query: 120 IHVS---------------------NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 158
++ N +I + G + A KLF ++ +KN++SWT+
Sbjct: 228 AMIAGLLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMP--KKNVISWTT 285
Query: 159 IISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE 217
+I+G G +EA++ F RM KPN+ TF+SVL ACS+ + EG + +++ +
Sbjct: 286 MITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVH-QIISK 344
Query: 218 CEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGE 277
LI+M + G L A K+ + ++V W ++ A + HG G+
Sbjct: 345 TVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHG---YGK 401
Query: 278 RVTRKILEMER-GYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319
EM + G+ D V +L+ G E + DE
Sbjct: 402 EAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDE 444
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 151/308 (49%), Gaps = 33/308 (10%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
N+ N MIT L K G + AR LF+EM +V++WT +I GY + A LF R+
Sbjct: 66 NVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVD 125
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
A + + +T A+ ++ + + + + + ++ N +ID YA+ G
Sbjct: 126 A----KKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSW-----NTMIDGYAQNGR 176
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR--VTFLS 193
I SA+ LFE + +N+VSW +++S A G +EA F+RM P R +++ +
Sbjct: 177 IDSAMYLFEKMP--ERNVVSWNTVMSMLAQCGRIEEARRLFDRM------PERDVISWTA 228
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
++ GL++E L F++M E D+ + +I L + G L +A K+ + +P +
Sbjct: 229 MI-----AGLLDEALDLFERMPER-----DLPSWNTMITGLIQNGDLRRARKLFNEMPKK 278
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEME--RGYGGDYVLMYNILAGVWRYGDAE 311
NV+ W T++ C G E ++ ++L + G +V + + + G+ +
Sbjct: 279 --NVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQ 336
Query: 312 RLRRVVDE 319
++ +++ +
Sbjct: 337 QVHQIISK 344
>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Vitis vinifera]
Length = 635
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 130/330 (39%), Positives = 204/330 (61%), Gaps = 2/330 (0%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + LF+ +PER+L +WN MITGL++ G+L AR LF EMP +NV+SWT +I G +
Sbjct: 255 LDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQE 314
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
S AL +F RM++ +P++ T ++V A + Q +H K +
Sbjct: 315 GESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFV 374
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VS LI+ Y+KCG + +A K+F+D +++LVSW II+ +A HG GKEA+ F+ M+K
Sbjct: 375 VS-ALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRK 433
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KP+ VT++ +L+ACSH GLVEEGLK+FD++V++ +L HY CL+D+ GRAGRL+
Sbjct: 434 SGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLK 493
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + ++ + VW LL C+ H NV++G++ +K+LE+E G Y+L+ NI
Sbjct: 494 EAFGFIERLETK-PSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIY 552
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ +A R+R + ++ K PG S +
Sbjct: 553 ASTGKWREAARVRLKMKDKGLKKQPGCSWI 582
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 151/320 (47%), Gaps = 49/320 (15%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+++ +LFD +PER++++W MI GL K G ++ AR LF+ MP RNVVSW +I GY +
Sbjct: 193 IEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQN 252
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R + AL LF RM E PS T++ + QNGD+R
Sbjct: 253 LRLDEALDLFERM--PERDLPSWNTMIT---GLIQNGDLRR------------------- 288
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
A KLF ++ +KN++SWT++I+G G +EA++ F RM
Sbjct: 289 -----------------ARKLFNEMP--KKNVISWTTMITGCVQEGESEEALKIFSRMLS 329
Query: 182 VV-LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
KPN+ TF+SVL ACS+ + EG + +++ + LI+M + G L
Sbjct: 330 TNGAKPNQGTFVSVLGACSNLAGLGEGQQVH-QIISKTVYQDSTFVVSALINMYSKCGEL 388
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER-GYGGDYVLMYN 299
A K+ + ++V W ++ A + HG G+ EM + G+ D V
Sbjct: 389 GTARKMFDDGMTSQRDLVSWNGIIAAYAHHG---YGKEAINFFKEMRKSGFKPDDVTYVG 445
Query: 300 ILAGVWRYGDAERLRRVVDE 319
+L+ G E + DE
Sbjct: 446 LLSACSHAGLVEEGLKYFDE 465
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 162/319 (50%), Gaps = 26/319 (8%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC-RNVVSWTGIIDGYTRMN 62
+ +LFDE+ E +++TW +I+G +K G +E AR LF+ + +NVV+WT ++ GY R N
Sbjct: 70 EARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSN 129
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV 122
+ + A LF M + ++ + QNG + + + +R ++
Sbjct: 130 KISDAEKLFNEM-----PNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSW---- 180
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
N ++ A+CG I A +LF+ + ++++SWT++I+G + +G EA F+RM
Sbjct: 181 -NTVMSMLAQCGRIEEARRLFD--RMPERDVISWTAMIAGLSKNGRIDEARLLFDRMP-- 235
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
+ N V++ +++ + ++E L F++M E D+ + +I L + G L +
Sbjct: 236 --ERNVVSWNAMITGYAQNLRLDEALDLFERMPER-----DLPSWNTMITGLIQNGDLRR 288
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME--RGYGGDYVLMYNI 300
A K+ + +P + NV+ W T++ C G E ++ ++L + G +V +
Sbjct: 289 ARKLFNEMPKK--NVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGA 346
Query: 301 LAGVWRYGDAERLRRVVDE 319
+ + G+ +++ +++ +
Sbjct: 347 CSNLAGLGEGQQVHQIISK 365
>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 512
Score = 250 bits (639), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 129/332 (38%), Positives = 206/332 (62%), Gaps = 7/332 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ +LFDE+P R++ TWN +I G + G +E A LF +MP RNV+SWT +I GY +
Sbjct: 133 LRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQN 192
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF--NAFH 119
+ AL +F + + T+P+E++I +V PA Q G + + I Y GF NA+
Sbjct: 193 GKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAY- 251
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
VSN +++ +A+CG I A ++F++I +R NL SW ++I G A+HG +A++ +++M
Sbjct: 252 --VSNAVLELHARCGNIEEAQQVFDEIGSKR-NLCSWNTMIMGLAVHGRCIDALQLYDQM 308
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
++P+ VTF+ +L AC+HGG+V EG + F+ M + +V P ++HYGCL+D+LGRAG
Sbjct: 309 LIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGE 368
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
L++A + +P + V+W TLLGACSFHGNVE+GE + ++E G+YV++ N
Sbjct: 369 LQEAYNLIQNMPMA-PDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSN 427
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
I A + RLR+++ + K G S +
Sbjct: 428 IYALAGDWSGVARLRKMMKGGHITKRAGYSYI 459
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 134/279 (48%), Gaps = 34/279 (12%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
+I L++ +L YA +LF+++P +V + I ++ + + L+ +M + + P
Sbjct: 22 LIEKLLQLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCS-QGCSP 80
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
++ + +FPA +V Q++H + K GF A + L+D YAK G + SA +L
Sbjct: 81 NQYSFTFLFPACASLFNVYPGQMLHSHFCKSGF-ASDMFAMTALLDMYAKLGMLRSARQL 139
Query: 143 FEDISVER-----------------------------KNLVSWTSIISGFAMHGMGKEAV 173
F+++ V +N++SWT++ISG+A +G +A+
Sbjct: 140 FDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKAL 199
Query: 174 ENFERMQ-KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLID 232
E F ++ + KPN V+ SVL ACS G ++ G K + + +++
Sbjct: 200 EMFIGLENEKGTKPNEVSIASVLPACSQLGALDIG-KRIEAYARNNGFFKNAYVSNAVLE 258
Query: 233 MLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ R G +E+A++V I S+ N+ W T++ + HG
Sbjct: 259 LHARCGNIEEAQQVFDEIGSK-RNLCSWNTMIMGLAVHG 296
>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Vitis vinifera]
Length = 512
Score = 250 bits (639), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 135/331 (40%), Positives = 195/331 (58%), Gaps = 3/331 (0%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L K FDE+ R++ TWN MI G + G+LE A LF MP RNV SWT +I GY +
Sbjct: 132 LLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQ 191
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+ AL++F M P+E+T+ +V PA G + + I Y G+ ++
Sbjct: 192 NGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFK-NL 250
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+VSN L++ YA+CG I A +FE+I R+NL SW S+I G A+HG EA+E F +M
Sbjct: 251 YVSNALLEMYARCGRIDKAWGVFEEID-GRRNLCSWNSMIMGLAVHGRCDEAIELFYKML 309
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ P+ VTF+ VL AC+HGG+V EG FF+ M + + P ++HYGC++D+LGRAG L
Sbjct: 310 REGAAPDDVTFVGVLLACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCMVDLLGRAGEL 369
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
+A + +P E + VVW TLLGACSFHG+VE+ E+ + E+E G+YV++ NI
Sbjct: 370 REAHDLILRMPME-PDSVVWGTLLGACSFHGHVELAEKAAGALFELEPSNPGNYVILSNI 428
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ RLR+++ K G S +
Sbjct: 429 YATAGRWDGVARLRKLMKGGKITKAAGYSFI 459
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 129/299 (43%), Gaps = 48/299 (16%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
+I L++ + YA LF+ +P V + +I Y+ + +L+ +M + P
Sbjct: 22 LIVSLLQIPSIPYAHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQM-CLQGCSP 80
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
+E + +F A + +++H + K GF + L+D YAK G + A K
Sbjct: 81 NEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGC-DVFALTALVDMYAKLGLLSLARKQ 139
Query: 143 FEDISVE-----------------------------RKNLVSWTSIISGFAMHGMGKEAV 173
F++++V +N+ SWT++ISG+A +G +A+
Sbjct: 140 FDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKAL 199
Query: 174 ENFERM-QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY----- 227
F M ++ ++PN VT SVL AC++ G +E G E EV Y
Sbjct: 200 SMFLMMEEETEMRPNEVTLASVLPACANLGALEVG--------ERIEVYARGNGYFKNLY 251
Query: 228 --GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKIL 284
L++M R GR+++A V I N+ W +++ + HG + + K+L
Sbjct: 252 VSNALLEMYARCGRIDKAWGVFEEIDGR-RNLCSWNSMIMGLAVHGRCDEAIELFYKML 309
>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
Length = 545
Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 203/331 (61%), Gaps = 6/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L K FD + E+++V+WN +I+ + G++ AR LF MP + VVSWT ++ GYT +
Sbjct: 167 LSTARKAFDGMREKDVVSWNTLISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYTAV 226
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
GA+ +FR M E EP +++I+AV PA Q G + + I+ Y K G ++
Sbjct: 227 GDFTGAVEVFRLM-QMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCSKHGMLG-KVY 284
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N L++ YAKCGCI AL+LF +S K+++SW++ I G A HG +EAV FE M +
Sbjct: 285 ICNALMEMYAKCGCIEEALQLFHGMS--EKDVISWSTAIGGLAAHGRAREAVRLFEVMDR 342
Query: 182 V-VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ PN +TF+ +L+ACSH GLV+EGL++ D+M E+ V P ++HYGC++D+LGR+GR+
Sbjct: 343 EGRVMPNGITFVGLLSACSHAGLVDEGLRYLDQMKEDYGVEPGVEHYGCVVDLLGRSGRI 402
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
++A G+P + +W +LL AC HG+VE +++E+E G G+ V++ N+
Sbjct: 403 QRALDTIRGMPVP-PDGKIWGSLLSACRSHGDVETAVVAAERLVELEPGDVGNLVMLANV 461
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
R+G+ R+ + R+ K PG S++
Sbjct: 462 YGAAGRWGEVASTRKEIRSRSTRKTPGCSMI 492
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 250 bits (638), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 201/327 (61%), Gaps = 5/327 (1%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
+LFD +PE++LV+ M+T K GEL+ AR LF+ M R+ V W +IDGYT+
Sbjct: 125 AQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMP 184
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
N AL LFRRM+ + +P+E+T+L+V A Q G + + + +H Y E G F++HV
Sbjct: 185 NEALVLFRRMLKAK-AKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQ-FNVHVGT 242
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
L+D Y+KCG + A +F+ I + K++V+W S+I G+AM G +EA++ F+ M ++ L
Sbjct: 243 ALVDMYSKCGSLEDARLVFDKI--DDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGL 300
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
P +TF+ +L+AC H G V EG F+KM +E + P I+HYGC++++LGRAG +EQA
Sbjct: 301 HPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAY 360
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
++ + E + V+W TLLGAC HG + +GE++ +++ G Y+L+ NI A V
Sbjct: 361 ELVKNMNIE-PDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAV 419
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
+ RLR ++ + K PG S +
Sbjct: 420 GNWDGVARLRTMMKDSGVKKEPGCSSI 446
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 120/263 (45%), Gaps = 38/263 (14%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G L+Y+ +LF +V WT II G+ AL + +M+ + EP+ T
Sbjct: 23 GRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLT-QGVEPNAFT---- 77
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS--- 147
F +I + + + +H K GF++ ++V L+D YA+ G + SA +LF+ +
Sbjct: 78 FSSILKLCPIEPGKALHSQAVKLGFDS-DLYVRTGLLDVYARGGDVVSAQQLFDTMPEKS 136
Query: 148 --------------------------VERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+E ++ V W +I G+ +GM EA+ F RM K
Sbjct: 137 LVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLK 196
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KPN VT LSVL+AC G +E G ++ +E + ++ L+DM + G LE
Sbjct: 197 AKAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQFNVHVGTALVDMYSKCGSLE 255
Query: 242 QAEKVASGIPSEITNVVVWRTLL 264
A V I + +VV W +++
Sbjct: 256 DARLVFDKIDDK--DVVAWNSMI 276
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 71/146 (48%), Gaps = 9/146 (6%)
Query: 129 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR 188
+YA G + ++ LF + ++ WT+II G A+ G+ ++A+ + +M ++PN
Sbjct: 18 SYASLGRLDYSVALFG--RTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNA 75
Query: 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
TF S+L C +E G + V + D+ L+D+ R G + A+++
Sbjct: 76 FTFSSILKLCP----IEPGKALHSQAV-KLGFDSDLYVRTGLLDVYARGGDVVSAQQLFD 130
Query: 249 GIPSEITNVVVWRTLLGACSFHGNVE 274
+P + ++V +L + HG ++
Sbjct: 131 TMPEK--SLVSLTAMLTCYAKHGELD 154
>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 589
Score = 250 bits (638), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 129/332 (38%), Positives = 206/332 (62%), Gaps = 7/332 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ +LFDE+P R++ TWN +I G + G +E A LF +MP RNV+SWT +I GY +
Sbjct: 133 LRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQN 192
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF--NAFH 119
+ AL +F + + T+P+E++I +V PA Q G + + I Y GF NA+
Sbjct: 193 GKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAY- 251
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
VSN +++ +A+CG I A ++F++I +R NL SW ++I G A+HG +A++ +++M
Sbjct: 252 --VSNAVLELHARCGNIEEAQQVFDEIGSKR-NLCSWNTMIMGLAVHGRCIDALQLYDQM 308
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
++P+ VTF+ +L AC+HGG+V EG + F+ M + +V P ++HYGCL+D+LGRAG
Sbjct: 309 LIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGE 368
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
L++A + +P + V+W TLLGACSFHGNVE+GE + ++E G+YV++ N
Sbjct: 369 LQEAYNLIQNMPMA-PDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPGNYVILSN 427
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
I A + RLR+++ + K G S +
Sbjct: 428 IYALAGDWSGVARLRKMMKGGHITKRAGYSYI 459
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 134/279 (48%), Gaps = 34/279 (12%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
+I L++ +L YA +LF+++P +V + I ++ + + L+ +M + + P
Sbjct: 22 LIEKLLQLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCS-QGCSP 80
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
++ + +FPA +V Q++H + K GF A + L+D YAK G + SA +L
Sbjct: 81 NQYSFTFLFPACASLFNVYPGQMLHSHFCKSGF-ASDMFAMTALLDMYAKLGMLRSARQL 139
Query: 143 FEDISVER-----------------------------KNLVSWTSIISGFAMHGMGKEAV 173
F+++ V +N++SWT++ISG+A +G +A+
Sbjct: 140 FDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKAL 199
Query: 174 ENFERMQ-KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLID 232
E F ++ + KPN V+ SVL ACS G ++ G K + + +++
Sbjct: 200 EMFIGLENEKGTKPNEVSIASVLPACSQLGALDIG-KRIEAYARNNGFFKNAYVSNAVLE 258
Query: 233 MLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ R G +E+A++V I S+ N+ W T++ + HG
Sbjct: 259 LHARCGNIEEAQQVFDEIGSK-RNLCSWNTMIMGLAVHG 296
>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Vitis vinifera]
Length = 573
Score = 250 bits (638), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 133/332 (40%), Positives = 205/332 (61%), Gaps = 12/332 (3%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFDE+ ERN+V+W MI+G + G++ A LFEEMP R+V SW +I GYT+ A
Sbjct: 213 LFDEMTERNVVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEA 272
Query: 68 LALFRRMVACEY------TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
L+LFRRM+A E P+++T + A G +R + IHGY + G
Sbjct: 273 LSLFRRMIAVEAGAWGQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGL-GLDSF 331
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VSN L+D Y KCGC+ A ++F D ++ER +L SW S+I+ A+HG + A+ FE M
Sbjct: 332 VSNALVDMYGKCGCLKEARRVF-DRTLER-SLTSWNSMINCLALHGQSQNAISVFEEMMT 389
Query: 182 VV--LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+KP+ VTF+ +LNAC+HGGLVE+G +F+ M + + P I+HYGCL+D+LGRAG+
Sbjct: 390 CGSGVKPDEVTFIGLLNACTHGGLVEKGWLYFELMTQNYGIEPQIEHYGCLVDLLGRAGQ 449
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
E+A +V G+ E + V+W +LL C HG+ ++ E +K+++M+ GG +++ N
Sbjct: 450 FEEAMEVVRGMRIE-PDEVIWGSLLNGCKIHGHTDLAEFSIKKLIDMDPNNGGYGIMLAN 508
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
I + ++ + ++R+V+ E+NA K PG S +
Sbjct: 509 IYGELGKWDEVRKVRKVLKEQNAHKTPGCSWI 540
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 131/319 (41%), Gaps = 45/319 (14%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
L YAR +F+ + NV +T +I Y + AL L+R MV P+ V
Sbjct: 104 LSYARFIFDHVESPNVYLYTAMITAYASHSDHTSALLLYRNMVRRRRPWPNHFIYPHVLK 163
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDT----------------------- 129
+ Q + +++H + GF + + V L+D
Sbjct: 164 SCTQVVGPGSARMVHCQVLRSGFEQYPV-VQTALLDAYLRFWSDVESARLLFDEMTERNV 222
Query: 130 ---------YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
Y + G I +A+ LFE++ +++ SW ++I+G+ +G+ EA+ F RM
Sbjct: 223 VSWTAMISGYTRLGQIGNAVLLFEEMP--ERDVPSWNALIAGYTQNGLFMEALSLFRRMI 280
Query: 181 KVVL-------KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDM 233
V +PN+VT + L+AC H G++ G K+ V + D L+DM
Sbjct: 281 AVEAGAWGQGNRPNQVTAVCSLSACGHTGMLRLG-KWIHGYVYRNGLGLDSFVSNALVDM 339
Query: 234 LGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD 293
G+ G L++A +V ++ W +++ + HG + V +++ G D
Sbjct: 340 YGKCGCLKEARRVFDRTLER--SLTSWNSMINCLALHGQSQNAISVFEEMMTCGSGVKPD 397
Query: 294 YVLMYNILAGVWRYGDAER 312
V +L G E+
Sbjct: 398 EVTFIGLLNACTHGGLVEK 416
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 72/186 (38%), Gaps = 33/186 (17%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
LK+ ++FD ER+L +WN MI L G+ + A S+FEEM
Sbjct: 346 LKEARRVFDRTLERSLTSWNSMINCLALHGQSQNAISVFEEM------------------ 387
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
M +P E+T + + A G V L + I
Sbjct: 388 ------------MTCGSGVKPDEVTFIGLLNACTHGGLVEKGWLYFELMTQNYGIEPQIE 435
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
CL+D + G A+++ + +E ++ W S+++G +HG A F +
Sbjct: 436 HYGCLVDLLGRAGQFEEAMEVVRGMRIEPDEVI-WGSLLNGCKIHGHTDLA--EFSIKKL 492
Query: 182 VVLKPN 187
+ + PN
Sbjct: 493 IDMDPN 498
>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
Length = 547
Score = 250 bits (638), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 126/326 (38%), Positives = 204/326 (62%), Gaps = 6/326 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FD + E++ V+WN +I+ + G++ AR LF MP + VVSWT ++ GYT + G
Sbjct: 173 KVFDGMREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAG 232
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ +FR+M E EP +++I+AV PA Q G + + I+ Y K G I++ N L
Sbjct: 233 AVEVFRQM-QMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLG-KIYICNAL 290
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV-VLK 185
++ YAKCGCI AL+LF +S K+++SW++ I G A HG +EAV+ FE M + +
Sbjct: 291 MEMYAKCGCIEEALQLFHGMS--EKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVM 348
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN +TF+ +L+ACSH GL++EGL++FD+M EE V P ++HYGC++D+LGR+GR+++A
Sbjct: 349 PNGITFVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPSVEHYGCVVDLLGRSGRIQRALD 408
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
G+P + +W +LL AC H +V+ +++E+E G+ V++ N+ A
Sbjct: 409 TIGGMPIP-PDGKIWGSLLSACRSHSDVDTAVVAAERLVELEPEDVGNLVMLANVYAAAG 467
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
R+G+ R+ + R+ K PG S++
Sbjct: 468 RWGNVASTRKEIRSRSTRKTPGCSMI 493
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 249 bits (637), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 126/314 (40%), Positives = 198/314 (63%), Gaps = 5/314 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FD++P+R+++TWN+MI LVK G+ E A LF EMP RNV SWT +I GY + +S
Sbjct: 169 KVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKE 228
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ LF M P+E+T++AV A G++ + IH + + G+ +I V N L
Sbjct: 229 AIDLFLEMEDAGLL-PNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEK-NIRVCNTL 286
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y KCGC+ A ++F+++ E + +VSW+++I+G A HG ++A+ F +M +KP
Sbjct: 287 IDMYVKCGCLEDACRIFDNM--EERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKP 344
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N VTF+ +L+ACSH G+VE+G K+F M + ++P I+HYGC++D+ RAG L++A +
Sbjct: 345 NAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEF 404
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P N VVW LLG C H NV++ E TR + +++ G YV++ NI A R
Sbjct: 405 IMNMPIA-PNGVVWGALLGGCKVHKNVKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGR 463
Query: 307 YGDAERLRRVVDER 320
+ D R+R+++ +R
Sbjct: 464 WEDVARVRKLMRDR 477
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 137/314 (43%), Gaps = 36/314 (11%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
YA+ +F+ + V W + + + A++LF R+ + + P T V
Sbjct: 61 SSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDIS-PDHYTCSFV 119
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFE------ 144
A + DVRN +++HGY EK G + ++ + N ++ YA CG I A K+F+
Sbjct: 120 LKACSRLLDVRNGKIVHGYVEKLGLQS-NMFLQNMIVHLYALCGEIGVARKVFDKMPQRD 178
Query: 145 ----DISVER-------------------KNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+I + R +N+ SWTS+I G+A G KEA++ F M+
Sbjct: 179 VITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMED 238
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
L PN VT ++VL AC+ G + G + D +I+ LIDM + G LE
Sbjct: 239 AGLLPNEVTVVAVLVACADMGNLVLGRRIHD-FSNRSGYEKNIRVCNTLIDMYVKCGCLE 297
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A ++ + E VV W ++ + HG E + K++ G + V IL
Sbjct: 298 DACRIFDNM--EERTVVSWSAMIAGLAAHGRAEDALALFNKMINT--GVKPNAVTFIGIL 353
Query: 302 AGVWRYGDAERLRR 315
G E+ R+
Sbjct: 354 HACSHMGMVEKGRK 367
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 74/187 (39%), Gaps = 45/187 (24%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM------PCRNVVSWTGII 55
L+D ++FD + ER +V+W+ MI GL G E A +LF +M P N V++ GI+
Sbjct: 296 LEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKP--NAVTFIGIL 353
Query: 56 DGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF 115
+ M F M +Y + P I G
Sbjct: 354 HACSHMGMVEKGRKYFASMTR-DY---------GIVPRIEHYG----------------- 386
Query: 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
C++D +++ G + A + ++ + N V W +++ G +H K A E
Sbjct: 387 ---------CMVDLFSRAGLLQEAHEFIMNMPIA-PNGVVWGALLGGCKVHKNVKLAEEA 436
Query: 176 FERMQKV 182
+ K+
Sbjct: 437 TRHLSKL 443
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 128/330 (38%), Positives = 203/330 (61%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+D +LFD++ E+++V+W MI G K G+ + AR +F+ MP ++ +W +I Y +
Sbjct: 283 LEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQN 342
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ ALA+FR + + T+P+E+T+ + A Q G + IH Y +K+G + H
Sbjct: 343 GKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIK-LNFH 401
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
++ LID Y+KCG + AL++F SVER+++ W+++I+G AMHG G+ A++ F +MQ+
Sbjct: 402 ITTSLIDMYSKCGHLEKALEVF--YSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQE 459
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPN VTF ++L ACSH GLV+EG FF++M V+P KHY C++D+LGRAG LE
Sbjct: 460 TKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLE 519
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++ +P + + VW LLGAC +GNVE+ E ++LE + G YVL+ NI
Sbjct: 520 EAVELIEKMPI-VPSASVWGALLGACRIYGNVELAEMACSRLLETDSNNHGAYVLLSNIY 578
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ RLR+ + K PG S +
Sbjct: 579 AKAGKWDCVSRLRQHMKVSGLEKEPGCSSI 608
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 142/318 (44%), Gaps = 46/318 (14%)
Query: 26 GLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEI 85
L L+YA +F+++P N+ +W +I + + L +F +M+ P+
Sbjct: 73 ALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSY 132
Query: 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFED 145
T V A + + Q IHG K F + + +SN LI Y+ G + SA +F
Sbjct: 133 TFPFVIKAATEVSSLLAGQAIHGMVMKASFGS-DLFISNSLIHFYSSLGDLDSAYLVFSK 191
Query: 146 ISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHG---- 201
I VE K++VSW S+ISGF G +EA++ F+RM+ +PNRVT + VL+AC+
Sbjct: 192 I-VE-KDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLE 249
Query: 202 -------------------------------GLVEEGLKFFDKMVEECEVLPDIKHYGCL 230
G +E+ + FDKM E+ DI + +
Sbjct: 250 FGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEK-----DIVSWTTM 304
Query: 231 IDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 290
ID + G + A +V +P E ++ W L+ + +G + + R+ L++ +
Sbjct: 305 IDGYAKVGDYDAARRVFDVMPRE--DITAWNALISSYQQNGKPKEALAIFRE-LQLNKNT 361
Query: 291 GGDYVLMYNILAGVWRYG 308
+ V + + LA + G
Sbjct: 362 KPNEVTLASTLAACAQLG 379
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 129/297 (43%), Gaps = 70/297 (23%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+F ++ E+++V+WN MI+G V+ G E A LF+ M N
Sbjct: 188 VFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMEN-------------------- 227
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
P+ +T++ V A + D+ + Y E+ G + ++ +SN ++
Sbjct: 228 ------------ARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGID-INLILSNAML 274
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFA----------------------- 164
D Y KCG + A +LF+ + E K++VSWT++I G+A
Sbjct: 275 DMYVKCGSLEDARRLFDKM--EEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAW 332
Query: 165 --------MHGMGKEAVENFERMQ-KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215
+G KEA+ F +Q KPN VT S L AC+ G ++ G + +
Sbjct: 333 NALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLG-GWIHVYI 391
Query: 216 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
++ + + LIDM + G LE+A +V + E +V VW ++ + HG+
Sbjct: 392 KKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSV--ERRDVFVWSAMIAGLAMHGH 446
>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial [Vitis vinifera]
Length = 694
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 131/321 (40%), Positives = 199/321 (61%), Gaps = 3/321 (0%)
Query: 9 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGAL 68
F+ + ++ +WN +I+G V+ G +E AR LF+EMP R+V SW+ +I GY++ + + AL
Sbjct: 374 FELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSMISGYSQNEQPDLAL 433
Query: 69 ALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLID 128
LF MVA +P+EIT+++VF AI G + + H Y + +++ LID
Sbjct: 434 QLFHEMVAGG-VQPNEITMVSVFSAIATLGTLMEGRWAHEYILSNSI-PLNDNLNAALID 491
Query: 129 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR 188
YAKCG I AL+LF +I ++ W +II G AMHG +++ F ++Q+V +KPN
Sbjct: 492 MYAKCGSITIALQLFYEIQDRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQRVRIKPNS 551
Query: 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
+TF+ VL+AC H GLV+ G K+F M + P+IKHYGC+ID+LGRAGRL++A ++
Sbjct: 552 ITFIGVLSACCHAGLVDTGEKYFKGMKNLYNIEPNIKHYGCMIDLLGRAGRLKEAAEMIR 611
Query: 249 GIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
+P + +VV+W TLL AC HGNVE+GER + +++ +G VL+ NI A R+
Sbjct: 612 KMPMK-ADVVIWGTLLAACRTHGNVEIGERAAENLAKLDISHGAGRVLLSNIYADAGRWD 670
Query: 309 DAERLRRVVDERNALKFPGRS 329
DA +RR + + K PG S
Sbjct: 671 DAFLVRRAMQSQRMKKSPGCS 691
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 153/312 (49%), Gaps = 34/312 (10%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + LFDE+PERN+VTWNVM+ G K G ++ AR LFE +P ++VVSW IIDGY ++
Sbjct: 235 LGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDGYVQI 294
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF--- 118
R AL ++R M+ P+E+ I+ + A + V Q HG + GF+ +
Sbjct: 295 ERLGEALRMYRSMLRTG-VGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFI 353
Query: 119 ---------------------------HIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151
H+ N LI + + G I A +LF+++ +
Sbjct: 354 QATIIHFYAACGEINLAFLQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDEM--PER 411
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
++ SW+S+ISG++ + A++ F M ++PN +T +SV +A + G + EG
Sbjct: 412 DVFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEITMVSVFSAIATLGTLMEGRWAH 471
Query: 212 DKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ ++ L D LIDM + G + A ++ I +++V W ++ + HG
Sbjct: 472 EYILSNSIPLND-NLNAALIDMYAKCGSITIALQLFYEIQDRVSSVSPWNAIICGLAMHG 530
Query: 272 NVEMGERVTRKI 283
+ + ++ ++
Sbjct: 531 HANVSLKLFSQL 542
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 113/244 (46%), Gaps = 31/244 (12%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
+ + LFD + V+ N+M+ G VK G L+ AR LFE+MP + VS+T ++ G +
Sbjct: 102 LISNARSLFDTCSVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQ 161
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
N A+ +F+ M P+E+T+ +V A G + NC+++H K G A +I
Sbjct: 162 NNCWLEAIGVFKDMRFAGVI-PNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNI 220
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDIS-----------------------------VERK 151
+N L+ Y C + +A LF++I + K
Sbjct: 221 VATN-LVHMYCVCSSLGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAK 279
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
++VSW +II G+ EA+ + M + + PN V + +++AC V EG +F
Sbjct: 280 DVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFH 339
Query: 212 DKMV 215
+V
Sbjct: 340 GIIV 343
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 132/330 (40%), Positives = 195/330 (59%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ KLFD + + +V+W M+ G + G L+ A LF+EMP ++VV W +I GY
Sbjct: 259 LESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHA 318
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
NR ALALF M A P E+T+++ A Q G + IH Y EK + ++
Sbjct: 319 NRGKEALALFNEMQAMN-INPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHEL-SLNVA 376
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LID YAKCG I A+++F+++ +N ++WT+IISG A+HG A+ F M
Sbjct: 377 LGTALIDMYAKCGKITKAIQVFQELP--GRNSLTWTAIISGLALHGNAHGAIAYFSEMID 434
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ P+ VTFL +L+AC HGGLVEEG K+F +M + + P +KHY C++D+LGRAG LE
Sbjct: 435 NSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLE 494
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AE++ +P E + VVW L AC HGNV MGER K+L+M+ G YVL+ N+
Sbjct: 495 EAEELIKSMPIE-ADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMY 553
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ +A + R+++ +R K PG S +
Sbjct: 554 GEAEMWKEAGKARKLMRQRGVEKTPGCSSI 583
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 146/292 (50%), Gaps = 38/292 (13%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ ++ N +I LV G+L+ AR +F++ R++VSW +I+GY R + AL +R
Sbjct: 139 DSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYRE 198
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M E +P E+T++ V + Q D+ + H Y E+ G + ++N L+D Y KC
Sbjct: 199 M-KVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLK-LTVPLANALMDMYMKC 256
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM------------------------- 168
G + SA KLF+ S+ K +VSWT+++ G+A G+
Sbjct: 257 GNLESARKLFD--SMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGG 314
Query: 169 ------GKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP 222
GKEA+ F MQ + + P+ VT +S L+ACS G ++ G+ + +E+ E+
Sbjct: 315 YVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGI-WIHHYIEKHELSL 373
Query: 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
++ LIDM + G++ +A +V +P N + W ++ + HGN
Sbjct: 374 NVALGTALIDMYAKCGKITKAIQVFQELPGR--NSLTWTAIISGLALHGNAH 423
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 122/266 (45%), Gaps = 28/266 (10%)
Query: 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTE 81
+ + +W +L+Y ++ N SW I G+ A+ L++R++ C+ T+
Sbjct: 45 IAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTK 104
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
P T +F A + +R I G+ GF++ I VSN +I CG + A K
Sbjct: 105 PDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDS-DIFVSNAVIHLLVSCGDLDGARK 163
Query: 142 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC--- 198
+F+ V ++LVSW S+I+G+ G EA+ + M+ +KP+ VT + V+++C
Sbjct: 164 MFDKSCV--RDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQL 221
Query: 199 --------SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI 250
SH + E GLK + L+DM + G LE A K+ +
Sbjct: 222 EDLDLGRESHCYIEENGLKL------------TVPLANALMDMYMKCGNLESARKLFDSM 269
Query: 251 PSEITNVVVWRTLLGACSFHGNVEMG 276
++ +V W T++ + G ++M
Sbjct: 270 TNK--TMVSWTTMVVGYAQSGLLDMA 293
>gi|115482212|ref|NP_001064699.1| Os10g0442700 [Oryza sativa Japonica Group]
gi|31432332|gb|AAP53975.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113639308|dbj|BAF26613.1| Os10g0442700 [Oryza sativa Japonica Group]
gi|215694632|dbj|BAG89823.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768315|dbj|BAH00544.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 493
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 205/327 (62%), Gaps = 7/327 (2%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFDE+P N V+WN ++ G K +L AR +F MP R+VVSW+ +IDG +
Sbjct: 119 RLFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHRE 178
Query: 67 ALALFRRMVAC----EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV 122
ALA+F M A + +++T+++V A GD+ + +H Y E+ GF +I +
Sbjct: 179 ALAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGF-PLNIRL 237
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
+ L+D YAKCG I AL++F+ + VE +++ W ++I G A+HGM +E+++ F++M+
Sbjct: 238 ATSLVDMYAKCGAIVEALEVFQAVPVENTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHA 297
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
+ P+ +T+LS+L+AC HGGLV+E FF + +E + P ++HY CL+D+LGRAGRLE+
Sbjct: 298 GVVPDEITYLSLLSACVHGGLVDEAWSFF-RSLEAQGLRPHVEHYACLVDVLGRAGRLEE 356
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302
A V +P + +V V LL AC HG VE+GE V R+++ ++ + G Y+ + NI A
Sbjct: 357 AYGVVKSMPMK-PSVSVLGALLNACHLHGWVELGEAVGRQLVHLQPDHDGRYIGLSNIYA 415
Query: 303 GVWRYGDAERLRRVVDERNALKFPGRS 329
R+ +A++ R+V++ER K PG S
Sbjct: 416 VARRWQEAKKARKVMEERGVKKVPGFS 442
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 103/224 (45%), Gaps = 35/224 (15%)
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
PS +T + A + R + +H +RG +HVSN L+ YA C A +
Sbjct: 60 PSHLTFPFLARAAARLATPRLARAVHAQPLRRGLLPHDLHVSNSLVHMYAACALPGLARR 119
Query: 142 LFEDIS-----------------------------VERKNLVSWTSIISGFAMHGMGKEA 172
LF++I + ++++VSW+++I G G +EA
Sbjct: 120 LFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHREA 179
Query: 173 VENFERMQKVV-----LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY 227
+ FE M+ ++ N VT +SVL AC+H G + G K + +EE +I+
Sbjct: 180 LAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMH-RYLEEHGFPLNIRLA 238
Query: 228 GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
L+DM + G + +A +V +P E T+V++W ++G + HG
Sbjct: 239 TSLVDMYAKCGAIVEALEVFQAVPVENTDVLIWNAVIGGLAVHG 282
>gi|115448475|ref|NP_001048017.1| Os02g0730900 [Oryza sativa Japonica Group]
gi|46390470|dbj|BAD15931.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|46390866|dbj|BAD16370.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113537548|dbj|BAF09931.1| Os02g0730900 [Oryza sativa Japonica Group]
gi|125541007|gb|EAY87402.1| hypothetical protein OsI_08809 [Oryza sativa Indica Group]
gi|125583571|gb|EAZ24502.1| hypothetical protein OsJ_08263 [Oryza sativa Japonica Group]
Length = 488
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 136/330 (41%), Positives = 196/330 (59%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D K+FD +P + +V+WNV++ G+V+ +L+ A +F EMP RNVVSW +I G+ R
Sbjct: 116 LGDARKMFDGMPVKTVVSWNVLLDGIVRASDLDAAWEVFVEMPERNVVSWNTVIAGFVRH 175
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
A+ LF M P E T++ A+ G + + HGY +R F+
Sbjct: 176 GWVQEAVDLFAEMTVVYGLAPDEATMVGFVSAVRDMGVLGIGRCAHGYVIRREFS-LDGA 234
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LI+ Y +CG + A + F SV KN+ WTS+I GFA HG + A+ F M++
Sbjct: 235 LGVALINMYTRCGSMGDAFRCFS--SVASKNVEQWTSVIGGFAAHGHPEMALRLFTEMRQ 292
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ ++PN VTFL+VLNACSHGGLV EG K+F+ M + ++HYGCLID+LGRAG LE
Sbjct: 293 LGIEPNGVTFLAVLNACSHGGLVNEGFKYFNLM-RSMGIKSTMQHYGCLIDLLGRAGFLE 351
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++AS +P E +V+W +LL AC HGNVEM E RK+ E +G YVL+ N
Sbjct: 352 EAFELASSLP-EDPGLVIWSSLLAACQSHGNVEMAEVAARKLAHAEPRHGSSYVLLSNTY 410
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ D +R RR ++E +K PG S +
Sbjct: 411 ARAGQWEDLKRTRRKMEEYGVMKQPGLSWI 440
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 110/278 (39%), Gaps = 54/278 (19%)
Query: 45 CRNVVSWTGIIDGYTRMNRSNGAL----ALFRRMVACEYTEPSEITILAVFPAIWQNGDV 100
CR S + + R + AL AL + AC PS
Sbjct: 34 CRAAFSGDAALRAFRRHHLDGRALHANPALVPALAACARLLPSAAA-------------- 79
Query: 101 RNCQLIHGYGEKRG--FNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE--------- 149
+ IH K G + ++ S L+ YA+ G + A K+F+ + V+
Sbjct: 80 -EAEQIHALLVKSGDPPSVSGVYASTSLVRVYARLGRLGDARKMFDGMPVKTVVSWNVLL 138
Query: 150 --------------------RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV-LKPNR 188
+N+VSW ++I+GF HG +EAV+ F M V L P+
Sbjct: 139 DGIVRASDLDAAWEVFVEMPERNVVSWNTVIAGFVRHGWVQEAVDLFAEMTVVYGLAPDE 198
Query: 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
T + ++A G++ G + V E D LI+M R G + A + S
Sbjct: 199 ATMVGFVSAVRDMGVLGIG-RCAHGYVIRREFSLDGALGVALINMYTRCGSMGDAFRCFS 257
Query: 249 GIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM 286
+ S+ NV W +++G + HG+ EM R+ ++ ++
Sbjct: 258 SVASK--NVEQWTSVIGGFAAHGHPEMALRLFTEMRQL 293
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 129/311 (41%), Positives = 193/311 (62%), Gaps = 5/311 (1%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ G E A LFE M RN+V+W +I+GY R N AL LFR M
Sbjct: 179 NTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREM-GLRGV 237
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
EP T++++ A + G + + H Y K G + ++H N L+D YAKCG I A
Sbjct: 238 EPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDG-NLHAGNALLDLYAKCGSIRQAH 296
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
K+F+++ E K++VSWTS+I G A++G GKEA+E F+ +++ L P+ +TF+ VL ACSH
Sbjct: 297 KVFDEM--EEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSH 354
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
G+V+EG +F +M EE ++P I+HYGC++D+LGRAG ++QA + +P + N VVW
Sbjct: 355 CGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQ-PNAVVW 413
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320
RTLLGAC+ HG++ +GE ++L++E + GDYVL+ N+ A R+ D ++RR +
Sbjct: 414 RTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLRE 473
Query: 321 NALKFPGRSLV 331
K PG SLV
Sbjct: 474 GVKKTPGHSLV 484
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 136/269 (50%), Gaps = 14/269 (5%)
Query: 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM-VACEYT 80
++ T L + YA +F ++ N+ +W +I GY AL L+R+M V+C
Sbjct: 79 LIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSC--I 136
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
EP T + AI + DVR + +H + GF + + V N L+ YA CG SA
Sbjct: 137 EPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESL-VFVQNTLVHMYAACGHAESAH 195
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
KLFE ++ +NLV+W S+I+G+A++G EA+ F M ++P+ T +S+L+AC+
Sbjct: 196 KLFELMA--ERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAE 253
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYG-CLIDMLGRAGRLEQAEKVASGIPSEITNVVV 259
G + G + MV+ L H G L+D+ + G + QA KV + E +VV
Sbjct: 254 LGALALGRRAHVYMVKVG--LDGNLHAGNALLDLYAKCGSIRQAHKVFDEM--EEKSVVS 309
Query: 260 WRTLLGACSFHGNVEMGERVTRKILEMER 288
W +L+ + +G G+ E+ER
Sbjct: 310 WTSLIVGLAVNG---FGKEALELFKELER 335
>gi|125525262|gb|EAY73376.1| hypothetical protein OsI_01257 [Oryza sativa Indica Group]
Length = 499
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/326 (41%), Positives = 200/326 (61%), Gaps = 6/326 (1%)
Query: 7 KLFDELPE-RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 65
++FDE ++V+WNVMI G VK G+L AR LF+ MP RNVVSWT +I Y +M +
Sbjct: 127 RVFDETAAYADVVSWNVMIDGYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPE 186
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
A+ +FRRM E EP + +L+V A G V + +H + +RG I + N
Sbjct: 187 EAIEVFRRM-QVEGIEPDGVALLSVLSACGDLGVVDLGEWVHRFVLRRGL-CQEIPLMNA 244
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
+ID Y KCG + AL++FE +E+K++V+WT++I+GFA+HG+G EAVE F RM+K +
Sbjct: 245 IIDMYVKCGSVKKALEVFE--GMEQKSIVTWTTMIAGFALHGLGSEAVELFRRMEKENVS 302
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN +TFL+VL+ CSH GL + G +F MV + ++ P ++HYGC+ID+LGRAG L +A
Sbjct: 303 PNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARG 362
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
+ +P + N +W LL A HG+ E+GE+ ++E+E G+Y+L+ NI A
Sbjct: 363 LIQDMPFK-ANAAIWGALLAAARTHGDTELGEQALLHLIELEPHNSGNYILLSNIYAEQE 421
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
R+ LR + +R PG S +
Sbjct: 422 RWDAVRELRISMRDRGLRNVPGASSI 447
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 90/189 (47%), Gaps = 33/189 (17%)
Query: 113 RGFNAFHIHVSNCLIDTYAKCGCIFSALKLFE----------------------DISVER 150
R +A H S L+ Y CG + SA ++F+ D++ R
Sbjct: 99 RAGHAADPHASASLVQAYCSCGSVASARRVFDETAAYADVVSWNVMIDGYVKSGDLARAR 158
Query: 151 --------KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202
+N+VSWT +I +A +EA+E F RMQ ++P+ V LSVL+AC G
Sbjct: 159 ELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSACGDLG 218
Query: 203 LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
+V+ G ++ + V + +I +IDM + G +++A +V G+ E ++V W T
Sbjct: 219 VVDLG-EWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGM--EQKSIVTWTT 275
Query: 263 LLGACSFHG 271
++ + HG
Sbjct: 276 MIAGFALHG 284
>gi|125574942|gb|EAZ16226.1| hypothetical protein OsJ_31678 [Oryza sativa Japonica Group]
Length = 387
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 205/327 (62%), Gaps = 7/327 (2%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFDE+P N V+WN ++ G K +L AR +F MP R+VVSW+ +IDG +
Sbjct: 13 RLFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHRE 72
Query: 67 ALALFRRMVAC----EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV 122
ALA+F M A + +++T+++V A GD+ + +H Y E+ GF +I +
Sbjct: 73 ALAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGF-PLNIRL 131
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
+ L+D YAKCG I AL++F+ + VE +++ W ++I G A+HGM +E+++ F++M+
Sbjct: 132 ATSLVDMYAKCGAIVEALEVFQAVPVENTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHA 191
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
+ P+ +T+LS+L+AC HGGLV+E FF + +E + P ++HY CL+D+LGRAGRLE+
Sbjct: 192 GVVPDEITYLSLLSACVHGGLVDEAWSFF-RSLEAQGLRPHVEHYACLVDVLGRAGRLEE 250
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302
A V +P + +V V LL AC HG VE+GE V R+++ ++ + G Y+ + NI A
Sbjct: 251 AYGVVKSMPMK-PSVSVLGALLNACHLHGWVELGEAVGRQLVHLQPDHDGRYIGLSNIYA 309
Query: 303 GVWRYGDAERLRRVVDERNALKFPGRS 329
R+ +A++ R+V++ER K PG S
Sbjct: 310 VARRWQEAKKARKVMEERGVKKVPGFS 336
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 134/326 (41%), Positives = 200/326 (61%), Gaps = 9/326 (2%)
Query: 7 KLFDELPERNLV-TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 65
+LF+ +P+R+++ TWN MI+G + G +E AR F+EM R+ +SW+ +IDGY +
Sbjct: 225 ELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFM 284
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
AL +F +M E P + + +V A G + + IH Y ++ + +
Sbjct: 285 EALEIFHQMQK-EKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGV-LGTS 342
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
L+D YAKCG I A ++FE +S K + SW ++I G AMHG ++A++ F +M +
Sbjct: 343 LVDMYAKCGRIDLAWEVFEKMS--NKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---IN 397
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN +TF+ VLNAC+HGGLV++GL F+ M +E V P I+HYGC++D+LGRAG L +AEK
Sbjct: 398 PNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEK 457
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
V S IP+E T VW LLGAC HGNVE+GERV + +LE+E G Y L+ NI A
Sbjct: 458 VVSSIPTEPTP-AVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAG 516
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
R+ + +R+++ ER PG S++
Sbjct: 517 RWEEVGEVRKLMKERGIKTTPGTSII 542
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 124/307 (40%), Gaps = 65/307 (21%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
++ E + +F+ + NV W +I N A+ L+ M+ + P++ T
Sbjct: 83 RYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHF-RPNKYTYP 141
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGF--------NAFHIHVS----------------- 123
AV A G V +H + K G +A ++ S
Sbjct: 142 AVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGE 201
Query: 124 ------NCLIDTYAKCGCIFSALKLFEDIS------------------------------ 147
N +ID Y + G + +A +LFE +
Sbjct: 202 VDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDE 261
Query: 148 VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEG 207
++ ++ +SW+++I G+ G EA+E F +MQK ++P + SVL+AC++ G +++G
Sbjct: 262 MKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQG 321
Query: 208 LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC 267
++ + + D L+DM + GR++ A +V + ++ V W ++G
Sbjct: 322 -RWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNK--EVSSWNAMIGGL 378
Query: 268 SFHGNVE 274
+ HG E
Sbjct: 379 AMHGRAE 385
Score = 43.9 bits (102), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 9/159 (5%)
Query: 121 HVSNCLIDTYAKCGC-----IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
+++ L+ +YA S+L++F+ V + N+ W +I + +A+
Sbjct: 67 YIAGSLVKSYANVSTNRYLSFESSLRVFD--FVRKPNVFLWNCMIKVCIENNEPFKAILL 124
Query: 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
+ M +PN+ T+ +VL ACS G+V EG++ +V+ + D I M
Sbjct: 125 YYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHG-LGGDGHILSSAIRMYA 183
Query: 236 RAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
GRL +A ++ E+ + V W ++ G VE
Sbjct: 184 SFGRLVEARRILDDKGGEV-DAVCWNAMIDGYLRFGEVE 221
>gi|56783979|dbj|BAD81434.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza
sativa Japonica Group]
Length = 503
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 134/326 (41%), Positives = 200/326 (61%), Gaps = 6/326 (1%)
Query: 7 KLFDELP-ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 65
++FDE ++V+WNVMI G VK G+L AR LF+ MP RNVVSWT +I Y +M +
Sbjct: 131 RVFDETAASADVVSWNVMIDGYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPE 190
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
A+ +FRRM E EP + +L+V A G V + +H + +RG I + N
Sbjct: 191 EAIEVFRRM-QVEGIEPDGVALLSVLSACGDLGVVDLGEWVHRFVLRRGL-CQEIPLMNA 248
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
+ID Y KCG + AL++FE +E+K++V+WT++I+GFA+HG+G EAVE F RM+K +
Sbjct: 249 IIDMYVKCGSVKKALEVFE--GMEQKSIVTWTTMIAGFALHGLGLEAVELFRRMEKENVS 306
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN +TFL+VL+ CSH GL + G +F MV + ++ P ++HYGC+ID+LGRAG L +A
Sbjct: 307 PNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARG 366
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
+ +P + N +W LL A HG+ E+GE+ ++E+E G+Y+L+ NI A
Sbjct: 367 LIQDMPFK-ANAAIWGALLAAARTHGDTELGEQALLHLIELEPHNSGNYILLSNIYAEQE 425
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
R+ LR + +R PG S +
Sbjct: 426 RWDAVRELRISMRDRGLRNVPGASSI 451
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 33/189 (17%)
Query: 113 RGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER---------------------- 150
R +A H S L+ Y CG + SA ++F++ +
Sbjct: 103 RAGHAADPHASASLVQAYCSCGSVASARRVFDETAASADVVSWNVMIDGYVKSGDLARAR 162
Query: 151 --------KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202
+N+VSWT +I +A +EA+E F RMQ ++P+ V LSVL+AC G
Sbjct: 163 ELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSACGDLG 222
Query: 203 LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
+V+ G ++ + V + +I +IDM + G +++A +V G+ E ++V W T
Sbjct: 223 VVDLG-EWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGM--EQKSIVTWTT 279
Query: 263 LLGACSFHG 271
++ + HG
Sbjct: 280 MIAGFALHG 288
>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
Length = 649
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 134/327 (40%), Positives = 195/327 (59%), Gaps = 9/327 (2%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
KLFD + R++V+W +++GL + G ++ AR LF MP R+ VSWT +IDGY + R
Sbjct: 201 KLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFRE 260
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG--FNAFHIHVSN 124
AL +FR M C E T+++V A Q G + + + Y ++G +AF V N
Sbjct: 261 ALEMFREM-QCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAF---VGN 316
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LID Y+KCG I AL +F+D+ ++ +WT+II G A++G G+EA+E F RM V
Sbjct: 317 ALIDMYSKCGSIERALDVFKDM--HHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSE 374
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
P+ VTF+ VL AC+H GLV++G +FF M E + P++ HYGC+ID+ GRAG++ +A
Sbjct: 375 TPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEAL 434
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+P N +W TLL AC HGN E+GE VT ++L+M+ Y L+ NI A
Sbjct: 435 DAIDQMPM-TPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENSTVYTLLSNIYAKC 493
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
R+ D RLR + E+ K PG SL+
Sbjct: 494 NRWEDVRRLRHTIMEKGIKKEPGCSLI 520
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 96/228 (42%), Gaps = 33/228 (14%)
Query: 49 VSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQ-NGDVRNCQLIH 107
V W +I G+ R R A F M A P+ +T ++V A + GDV +H
Sbjct: 110 VVWNALISGHNRCRRFGEACCSFVDM-ARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVH 168
Query: 108 GYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE------------------ 149
G G + V N L+D YA+C + SA KLF+ + V
Sbjct: 169 GRVVGSGVLP-DLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRV 227
Query: 150 -----------RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198
++ VSWT++I G+ +EA+E F MQ + + T +SV+ AC
Sbjct: 228 DEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITAC 287
Query: 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ G +E G ++ + + D LIDM + G +E+A V
Sbjct: 288 AQLGALEMG-EWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDV 334
>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Glycine max]
Length = 512
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 128/330 (38%), Positives = 197/330 (59%), Gaps = 3/330 (0%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ KLFD++P R + TWN M+ G ++G+++ A LF MP RNVVSWT +I GY+R
Sbjct: 134 LELARKLFDQMPVRGVPTWNAMMAGHARFGDMDVALELFRLMPSRNVVSWTTMISGYSRS 193
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ AL LF RM + P+ +T+ ++FPA G + Q + Y K GF +++
Sbjct: 194 KKYGEALGLFLRMEQEKGMMPNAVTLASIFPAFANLGALEIGQRVEAYARKNGFFK-NLY 252
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VSN +++ YAKCG I A K+F +I R NL SW S+I G A+HG + ++ +++M
Sbjct: 253 VSNAVLEMYAKCGKIDVAWKVFNEIGSLR-NLCSWNSMIMGLAVHGECCKTLKLYDQMLG 311
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
P+ VTF+ +L AC+HGG+VE+G F M ++P ++HYGC++D+LGRAG+L
Sbjct: 312 EGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNIIPKLEHYGCMVDLLGRAGQLR 371
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A +V +P + + V+W LLGACSFH NVE+ E + +E G+YV++ NI
Sbjct: 372 EAYEVIQRMPMK-PDSVIWGALLGACSFHDNVELAEIAAESLFALEPWNPGNYVILSNIY 430
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ +LR+V+ K G S +
Sbjct: 431 ASAGQWDGVAKLRKVMKGSKITKSAGHSFI 460
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 125/281 (44%), Gaps = 35/281 (12%)
Query: 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYT-RMNRSNGALALFRRMVACEYT 80
++I L++ L YA + P + + +I Y+ + +L+ +M+ +
Sbjct: 21 ILIEKLLEIPNLHYAHKVLHHSPKPTLFLYNKLIQAYSSHPQHQHQCFSLYSQMLLHSFL 80
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P++ T +F A Q++H + K GF + + L+D Y K G + A
Sbjct: 81 -PNQHTFNFLFSACTSLSSPSLGQMLHTHFIKSGFEP-DLFAATALLDMYTKVGTLELAR 138
Query: 141 KLFE-----------------------DISVE------RKNLVSWTSIISGFAMHGMGKE 171
KLF+ D+++E +N+VSWT++ISG++ E
Sbjct: 139 KLFDQMPVRGVPTWNAMMAGHARFGDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGE 198
Query: 172 AVENFERM-QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCL 230
A+ F RM Q+ + PN VT S+ A ++ G +E G + + + ++ +
Sbjct: 199 ALGLFLRMEQEKGMMPNAVTLASIFPAFANLGALEIGQR-VEAYARKNGFFKNLYVSNAV 257
Query: 231 IDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
++M + G+++ A KV + I S + N+ W +++ + HG
Sbjct: 258 LEMYAKCGKIDVAWKVFNEIGS-LRNLCSWNSMIMGLAVHG 297
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 125/330 (37%), Positives = 201/330 (60%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + +FD + R++++W ++TG G+++ AR F+++P R+ VSWT +IDGY RM
Sbjct: 259 MDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRM 318
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
NR ALALFR M +P E T++++ A G + + + Y +K
Sbjct: 319 NRFIEALALFREMQMSN-VKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKN-DTF 376
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LID Y KCG + A K+F+++ K+ +WT++I G A++G G+EA+ F M +
Sbjct: 377 VGNALIDMYFKCGNVGKAKKVFKEM--HHKDKFTWTAMIVGLAINGHGEEALAMFSNMIE 434
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ P+ +T++ VL AC+H G+VE+G FF M + + P++ HYGC++D+LGRAGRLE
Sbjct: 435 ASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLE 494
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A +V +P + N +VW +LLGAC H NV++ E ++ILE+E G YVL+ NI
Sbjct: 495 EAHEVIVNMPVK-PNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIY 553
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ + ++R+++ ER K PG SL+
Sbjct: 554 AACKRWENLRQVRKLMMERGIKKTPGCSLM 583
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 134/280 (47%), Gaps = 21/280 (7%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G++ YAR +F+ +P + W +I GY+R+N ++++ M+A +P T +
Sbjct: 55 GKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASN-IKPDRFTFPFL 113
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
+N ++ +++ + K GF++ ++ V I ++ C + A K+F+ +
Sbjct: 114 LKGFTRNMALQYGKVLLNHAVKHGFDS-NLFVQKAFIHMFSLCRLVDLARKVFD--MGDA 170
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
+V+W ++SG+ K++ F M+K + PN VT + +L+ACS +E G
Sbjct: 171 WEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHI 230
Query: 211 FDK----MVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
+ +VE +L ++ LIDM G +++A+ V + + +V+ W +++
Sbjct: 231 YKYINGGIVERNLILENV-----LIDMFAACGEMDEAQSVFDNMKNR--DVISWTSIVTG 283
Query: 267 CSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ G +++ + +I E DYV ++ G R
Sbjct: 284 FANIGQIDLARKYFDQIPER------DYVSWTAMIDGYLR 317
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 119/271 (43%), Gaps = 67/271 (24%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FD +VTWN+M++G + + + ++ LF EM R V
Sbjct: 163 KVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGV------------------ 204
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
P+ +T++ + A + D+ + I+ Y G ++ + N L
Sbjct: 205 --------------SPNSVTLVLMLSACSKLKDLEGGKHIYKYING-GIVERNLILENVL 249
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG------------------- 167
ID +A CG + A +F+++ + ++++SWTSI++GFA G
Sbjct: 250 IDMFAACGEMDEAQSVFDNM--KNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVS 307
Query: 168 ----------MGK--EAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215
M + EA+ F MQ +KP+ T +S+L AC+H G +E G ++ +
Sbjct: 308 WTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELG-EWVKTYI 366
Query: 216 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
++ + D LIDM + G + +A+KV
Sbjct: 367 DKNSIKNDTFVGNALIDMYFKCGNVGKAKKV 397
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 134/326 (41%), Positives = 200/326 (61%), Gaps = 9/326 (2%)
Query: 7 KLFDELPERNLV-TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 65
+LF+ +P+R+++ TWN MI+G + G +E AR F+EM R+ +SW+ +IDGY +
Sbjct: 226 ELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFM 285
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
AL +F +M E P + + +V A G + + IH Y ++ + +
Sbjct: 286 EALEIFHQMQK-EKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGV-LGTS 343
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
L+D YAKCG I A ++FE +S K + SW ++I G AMHG ++A++ F +M +
Sbjct: 344 LVDMYAKCGRIDLAWEVFEKMS--NKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---IY 398
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN +TF+ VLNAC+HGGLV++GL F+ M +E V P I+HYGC++D+LGRAG L +AEK
Sbjct: 399 PNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEK 458
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
V S IP+E T VW LLGAC HGNVE+GERV + +LE+E G Y L+ NI A
Sbjct: 459 VVSSIPTEPTP-AVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAG 517
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
R+ + +R+++ ER PG S++
Sbjct: 518 RWEEVGEVRKLMKERGIKTTPGTSII 543
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 138/304 (45%), Gaps = 46/304 (15%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM------PCR-------NVVSWTG 53
++FD + + N+ WN MI ++ E A L+ EM P + S +G
Sbjct: 93 RVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSG 152
Query: 54 II-----------------DGY-----TRMNRSNGALALFRRMVACEYTEPSEITILAVF 91
++ DG+ RM S G L RR++ + E + A+
Sbjct: 153 VVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMI 212
Query: 92 PAIWQNGDVRNC-QLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
+ G+V +L G ++ + + N +I +++CG + A + F+++ +
Sbjct: 213 DGYLRFGEVEAARELFEGMPDRSMISTW-----NAMISGFSRCGMVEVAREFFDEM--KE 265
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
++ +SW+++I G+ G EA+E F +MQK ++P + SVL+AC++ G +++G ++
Sbjct: 266 RDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQG-RW 324
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
+ + D L+DM + GR++ A +V + ++ V W ++G + H
Sbjct: 325 IHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNK--EVSSWNAMIGGLAMH 382
Query: 271 GNVE 274
G E
Sbjct: 383 GRAE 386
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 27/168 (16%)
Query: 121 HVSNCLIDTYAKCGC-----IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
+++ L+ +YA S+L++F+ V + N+ W +I K +EN
Sbjct: 68 YIAGSLVKSYANVSTNRYLSFESSLRVFD--FVRKPNVFLWNCMI---------KVCIEN 116
Query: 176 FERMQKVVL---------KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH 226
E + ++L +PN+ T+ +VL ACS G+V EG++ +V+ + D
Sbjct: 117 NEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHG-LGGDGHI 175
Query: 227 YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
I M GRL +A ++ E+ + V W ++ G VE
Sbjct: 176 LSSAIRMYASFGRLVEARRILDDKGGEV-DAVCWNAMIDGYLRFGEVE 222
>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g29230-like [Glycine max]
Length = 446
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 199/325 (61%), Gaps = 4/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD +P+ ++++WN +++G GE+E +FEEMP RNV SW G+I GY R
Sbjct: 77 ELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSWNGLIGGYVRNGLFKE 136
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL F+RM+ P++ T++AV A + GD+ + +H Y + G+ ++ V N L
Sbjct: 137 ALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKG-NLFVGNAL 195
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YAKCG I AL +F+ + V K++++W +II+ AMH +A+ FE M++ +P
Sbjct: 196 IDMYAKCGVIEKALDVFDGLDV--KDIITWNTIINSLAMHXHAADALSLFEGMKRAGERP 253
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ VTF+ +L+AC+H GLV G F MV++ ++P I+HYGC++D+LGRAG + QA +
Sbjct: 254 DGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQIEHYGCMVDLLGRAGLINQAVDI 313
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E +VV+W LLGAC + NVEM E ++++E+E G++V++ NI + R
Sbjct: 314 VRKMPME-PDVVIWAALLGACRXYKNVEMAELALQRLIELEPNNPGNFVMLSNIYKDLGR 372
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
D RL+ + + K PG S++
Sbjct: 373 SQDVARLKVAMRDTGFRKVPGCSVI 397
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 123/271 (45%), Gaps = 47/271 (17%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
F+ D K+F E+ ++N+ W ++ V ++ AR LF+ P +VV W I+ GY
Sbjct: 9 FVADAYKVFAEMRDKNVFAWTAVVAAHVACHDMVSARRLFDLAPQCDVVLWNVIVSGYIE 68
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+ A LF RM C+ W
Sbjct: 69 LGDMVAARELFDRMPDCDVMS-------------W------------------------- 90
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
N ++ YA G + +K+FE++ +N+ SW +I G+ +G+ KEA+E F+RM
Sbjct: 91 ---NTVLSGYANNGEVELFVKVFEEMPA--RNVYSWNGLIGGYVRNGLFKEALECFKRML 145
Query: 181 -KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
V+ PN T ++VL+ACS G +E G K+ + ++ LIDM + G
Sbjct: 146 VDGVVVPNDYTVVAVLSACSRLGDLEIG-KWVHVYADSIGYKGNLFVGNALIDMYAKCGV 204
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
+E+A V G+ ++ +++ W T++ + + H
Sbjct: 205 IEKALDVFDGL--DVKDIITWNTIINSLAMH 233
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 127/330 (38%), Positives = 200/330 (60%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ D KLFDE+PER++ +W +M+ G K G+ + AR +F MP + + +W +I Y +
Sbjct: 278 VDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQN 337
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ ALA+F + + +P E+T+++ A Q G + IH Y ++ G + H
Sbjct: 338 GKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGI-VLNCH 396
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ + L+D YAKCG + AL++F SVE +++ W+++I+G MHG GK A++ F MQ+
Sbjct: 397 LISSLVDMYAKCGSLEKALEVF--YSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQE 454
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPN VTF +VL ACSH GLV+EG FF +M V+P++KHY C++D+LGRAG LE
Sbjct: 455 AKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLE 514
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++ + + S + VW LLGACS H NVE+GE + ++L++E G VL+ NI
Sbjct: 515 EAMELINEM-STTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSNIY 573
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ LR+++ + K PG S +
Sbjct: 574 AKTGRWEKVSELRKLMRDTELKKEPGCSSI 603
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 132/273 (48%), Gaps = 12/273 (4%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
FD L T + L + L+YAR+LF+++P N+ +W +I Y + +
Sbjct: 54 FFDPFSASKLFT----ASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQS 109
Query: 68 LALFRRMV-ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
+F ++ CE P++ T V A + R +HG K F +++ N L
Sbjct: 110 FVIFLDLLDKCE-DLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSF-GMDLYILNSL 167
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+ Y CG + A +LF+ IS K++VSW S+IS FA ++A+E F +M++ + P
Sbjct: 168 VRFYGACGDLSMAERLFKGISC--KDVVSWNSMISAFAQGNCPEDALELFLKMERENVMP 225
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N VT + VL+AC+ +E G ++ +E + D+ ++DM + G ++ A+K+
Sbjct: 226 NSVTMVGVLSACAKKLDLEFG-RWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKL 284
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERV 279
+P +V W +L + G+ + V
Sbjct: 285 FDEMPER--DVFSWTIMLDGYAKMGDYDAARLV 315
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 132/323 (40%), Gaps = 79/323 (24%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L +LF + +++V+WN MI+ + E A LF +M NV+
Sbjct: 177 LSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVM------------ 224
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
P+ +T++ V A + D+ + + Y E++G +
Sbjct: 225 --------------------PNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKV-DLT 263
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDI-----------------------------SVERKN 152
+ N ++D Y KCG + A KLF+++ ++ K
Sbjct: 264 LCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKE 323
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQ-KVVLKPNRVTFLSVLNACSHGGLVEEG--LK 209
+ +W +IS + +G KEA+ F +Q + KP+ VT +S L+AC+ G ++ G +
Sbjct: 324 IAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIH 383
Query: 210 FFDK---MVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
+ K +V C ++ L+DM + G LE+A +V + E +V VW ++
Sbjct: 384 VYIKREGIVLNCHLI------SSLVDMYAKCGSLEKALEVFYSV--EERDVYVWSAMIAG 435
Query: 267 CSFHGNVEMGERVTRKILEMERG 289
HG G+ EM+
Sbjct: 436 LGMHGR---GKAAIDLFFEMQEA 455
>gi|125532120|gb|EAY78685.1| hypothetical protein OsI_33787 [Oryza sativa Indica Group]
Length = 493
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 204/327 (62%), Gaps = 7/327 (2%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFDE+P N V+WN ++ G K +L AR +F MP R+VVSW+ +IDG +
Sbjct: 119 RLFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHRE 178
Query: 67 ALALFRRMVAC----EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV 122
ALA+F M A + +++T+++V A GD+ + +H Y E+ GF +I +
Sbjct: 179 ALAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGF-PLNIRL 237
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
+ L+D YAKCG I AL++F + VE +++ W ++I G A+HGM +E+++ F++M+
Sbjct: 238 ATSLVDMYAKCGAIVEALEVFHAVPVESTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHA 297
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
+ P+ +T+L +L+AC HGGLV+E +FF + +E + P ++HY CL+D+LGRAGRLE+
Sbjct: 298 GVVPDEITYLCLLSACVHGGLVDEAWRFF-RSLEAQRLRPHVEHYACLVDVLGRAGRLEE 356
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302
A V +P + +V V LL AC HG VE+GE V R+++ ++ + G Y+ + NI A
Sbjct: 357 AYGVVKSMPMK-PSVSVLGALLNACHIHGWVELGEAVGRQLVHLQPDHDGRYIGLSNIYA 415
Query: 303 GVWRYGDAERLRRVVDERNALKFPGRS 329
R+ +A++ R+V++ER K PG S
Sbjct: 416 VARRWQEAKKARKVMEERGVKKVPGFS 442
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 103/224 (45%), Gaps = 35/224 (15%)
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
PS +T + A + R + +H +RG +HVSN L+ YA C A +
Sbjct: 60 PSHLTFPFLARAAARLASPRLARAVHAQPLRRGLLPQDLHVSNSLVHMYAACALPGLARR 119
Query: 142 LFEDIS-----------------------------VERKNLVSWTSIISGFAMHGMGKEA 172
LF++I + ++++VSW+++I G G +EA
Sbjct: 120 LFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHREA 179
Query: 173 VENFERMQKVV-----LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY 227
+ FE M+ ++ N VT +SVL AC+H G + G K + +EE +I+
Sbjct: 180 LAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMH-RYLEEHGFPLNIRLA 238
Query: 228 GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
L+DM + G + +A +V +P E T+V++W ++G + HG
Sbjct: 239 TSLVDMYAKCGAIVEALEVFHAVPVESTDVLIWNAVIGGLAVHG 282
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 128/324 (39%), Positives = 202/324 (62%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FD++ RNLV+WN MI G K G L AR LF+ M R+V+SWT +I Y++ + A
Sbjct: 235 VFDQMQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEA 294
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LF+ M+ + +P EIT+ +V A G + + H Y +K A I+V N LI
Sbjct: 295 LRLFKEMMESK-VKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKA-DIYVGNALI 352
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y KCG + AL++F+++ +K+ VSWTSIISG A++G A++ F RM + V++P+
Sbjct: 353 DMYCKCGVVEKALEVFKEM--RKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPS 410
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
F+ +L AC+H GLV++GL++F+ M + + P++KHYGC++D+L R+G L++A +
Sbjct: 411 HGAFVGILLACAHAGLVDKGLEYFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFI 470
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P +VV+WR LL A HGN+ + E T+K+LE++ G+YVL N AG R+
Sbjct: 471 KEMPV-TPDVVIWRILLSASQVHGNIPLAEIATKKLLELDPSNSGNYVLSSNTYAGSNRW 529
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
DA ++R ++++ N K G S +
Sbjct: 530 EDAVKMRELMEKSNVQKPSGSSCI 553
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 143/309 (46%), Gaps = 38/309 (12%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E +L N +I G L A+ +F+EMP R++VSW ++ GY + R L +F
Sbjct: 109 ESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEA 168
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M + +T++ V A G+ + Y E+ +++ N LID Y +
Sbjct: 169 MRVAG-VKGDAVTMVKVVLACTSLGEWGVADAMVDYIEENNVE-IDVYLGNTLIDMYGRR 226
Query: 134 GCIFSALKLFEDI-----------------------------SVERKNLVSWTSIISGFA 164
G + A +F+ + ++ +++++SWT++I+ ++
Sbjct: 227 GLVHLARGVFDQMQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYS 286
Query: 165 MHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDI 224
G EA+ F+ M + +KP+ +T SVL+AC+H G ++ G D +++ +V DI
Sbjct: 287 QAGQFTEALRLFKEMMESKVKPDEITVASVLSACAHTGSLDVGEAAHD-YIQKYDVKADI 345
Query: 225 KHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMG----ERVT 280
LIDM + G +E+A +V + + + V W +++ + +G + R+
Sbjct: 346 YVGNALIDMYCKCGVVEKALEVFKEMRKK--DSVSWTSIISGLAVNGFADSALDYFSRML 403
Query: 281 RKILEMERG 289
R++++ G
Sbjct: 404 REVVQPSHG 412
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 121/241 (50%), Gaps = 13/241 (5%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW 95
A +LF+++ + W +I G++ ++ N A+ ++ M + + +T L +F A
Sbjct: 30 AHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYR-QGLLGNNLTYLFLFKACA 88
Query: 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 155
+ DV IH K GF + H++VSN LI+ Y CG + A K+F+++ ++LVS
Sbjct: 89 RVPDVSCGSTIHARVLKLGFES-HLYVSNALINMYGSCGHLGLAQKVFDEMP--ERDLVS 145
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215
W S++ G+ +E + FE M+ +K + VT + V+ AC+ G E G+ D MV
Sbjct: 146 WNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLG--EWGVA--DAMV 201
Query: 216 ---EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
EE V D+ LIDM GR G + A V + + N+V W ++ GN
Sbjct: 202 DYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQM--QWRNLVSWNAMIMGYGKAGN 259
Query: 273 V 273
+
Sbjct: 260 L 260
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 21/205 (10%)
Query: 126 LIDTYA-KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LI +YA I A LF+ I R L W +I G+++ EA+ + M + L
Sbjct: 16 LIKSYALSPSTILKAHNLFQQI--HRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQGL 73
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
N +T+L + AC+ V G +++ + + LI+M G G L A+
Sbjct: 74 LGNNLTYLFLFKACARVPDVSCGSTIHARVL-KLGFESHLYVSNALINMYGSCGHLGLAQ 132
Query: 245 KVASGIPSEITNVVVWRTLL---GACSFHGNVEMGERVTRKILEMER--GYGGDYVLMYN 299
KV +P ++V W +L+ G C R + E R G GD V M
Sbjct: 133 KVFDEMPER--DLVSWNSLVCGYGQCKRF-------REVLGVFEAMRVAGVKGDAVTMVK 183
Query: 300 IL---AGVWRYGDAERLRRVVDERN 321
++ + +G A+ + ++E N
Sbjct: 184 VVLACTSLGEWGVADAMVDYIEENN 208
>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
Length = 1434
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 129/311 (41%), Positives = 193/311 (62%), Gaps = 5/311 (1%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ G E A LFE M RN+V+W +I+GY R N AL LFR M
Sbjct: 34 NTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREM-GLRGV 92
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
EP T++++ A + G + + H Y K G + ++H N L+D YAKCG I A
Sbjct: 93 EPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDG-NLHAGNALLDLYAKCGSIRQAH 151
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
K+F+++ E K++VSWTS+I G A++G GKEA+E F+ +++ L P+ +TF+ VL ACSH
Sbjct: 152 KVFDEM--EEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSH 209
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
G+V+EG +F +M EE ++P I+HYGC++D+LGRAG ++QA + +P + N VVW
Sbjct: 210 CGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQ-PNAVVW 268
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320
RTLLGAC+ HG++ +GE ++L++E + GDYVL+ N+ A R+ D ++RR +
Sbjct: 269 RTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLRE 328
Query: 321 NALKFPGRSLV 331
K PG SLV
Sbjct: 329 GVKKTPGHSLV 339
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 103/196 (52%), Gaps = 9/196 (4%)
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
AI + DVR + +H + GF + + V N L+ YA CG SA KLFE ++ +N
Sbjct: 4 AIAKLMDVREGEKVHSIAIRNGFESL-VFVQNTLVHMYAACGHAESAHKLFELMA--ERN 60
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
LV+W S+I+G+A++G EA+ F M ++P+ T +S+L+AC+ G + G +
Sbjct: 61 LVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHV 120
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
MV + + ++ L+D+ + G + QA KV + E +VV W +L+ + +G
Sbjct: 121 YMV-KVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEM--EEKSVVSWTSLIVGLAVNG- 176
Query: 273 VEMGERVTRKILEMER 288
G+ E+ER
Sbjct: 177 --FGKEALELFKELER 190
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 130/325 (40%), Positives = 192/325 (59%), Gaps = 5/325 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ KLFD + + +V+W M+ G + G L+ A LF+EMP ++VV W +I GY
Sbjct: 231 LESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHA 290
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
NR ALALF M A P E+T+++ A Q G + IH Y EK + ++
Sbjct: 291 NRGKEALALFNEMQAMN-INPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHEL-SLNVA 348
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LID YAKCG I A+++F+++ +N ++WT+IISG A+HG A+ F M
Sbjct: 349 LGTALIDMYAKCGKITKAIQVFQEL--PGRNSLTWTAIISGLALHGNAHGAIAYFSEMID 406
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ P+ VTFL +L+AC HGGLVEEG K+F +M + + P +KHY C++D+LGRAG LE
Sbjct: 407 NSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLE 466
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AE++ +P E + VVW L AC HGNV MGER K+L+M+ G YVL+ N+
Sbjct: 467 EAEELIKSMPIE-ADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMY 525
Query: 302 AGVWRYGDAERLRRVVDERNALKFP 326
+ +A + R+++ +R K P
Sbjct: 526 GEAEMWKEAGKARKLMRQRGVEKTP 550
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 132/311 (42%), Gaps = 62/311 (19%)
Query: 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTE 81
+ + +W +L+Y ++ N SW I G+ A+ L++R++ C+ T+
Sbjct: 89 IAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTK 148
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
P T +F A + +R I G+ GF++ I VSN +I CG + A K
Sbjct: 149 PDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDS-DIFVSNAVIHLLVSCGDLDGARK 207
Query: 142 LFE-----DI----------------------SVERKNLVSWTSIISGFAMHGM------ 168
+F+ D+ S+ K +VSWT+++ G+A G+
Sbjct: 208 MFDKSCVRDLVSWNSMINGYCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWK 267
Query: 169 -------------------------GKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGL 203
GKEA+ F MQ + + P+ VT +S L+ACS G
Sbjct: 268 LFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGA 327
Query: 204 VEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTL 263
++ G+ + +E+ E+ ++ LIDM + G++ +A +V +P N + W +
Sbjct: 328 LDVGI-WIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGR--NSLTWTAI 384
Query: 264 LGACSFHGNVE 274
+ + HGN
Sbjct: 385 ISGLALHGNAH 395
>gi|357150678|ref|XP_003575540.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 491
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 134/330 (40%), Positives = 197/330 (59%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D K+FD +PE +V+WNV++ G V+ G+L+ A LF EM RNVVSW ++ G+ R+
Sbjct: 119 LADARKVFDGMPETTVVSWNVLLDGFVRAGDLDAAWELFVEMTERNVVSWNTVMVGFARL 178
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R+ A+ LF M P E T++ A+ G + + HGY +R F+
Sbjct: 179 GRAQEAVELFVEMTTVYGLVPDEATMVGFVSAVRNIGLLGLGRSAHGYVIRREFS-LDGA 237
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LI+ Y +CG + +A F SV KN+ WTS I GFA HG A+ F M++
Sbjct: 238 LGVGLINMYTRCGSMTAAYLCFS--SVTSKNVEHWTSAIGGFAAHGHPDMALRLFAEMRE 295
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ ++PN VTF++VLNACSHGGLV+EG K+F+ M+ + + P I+HYGCL+D+LGRAG LE
Sbjct: 296 LGIEPNDVTFVAVLNACSHGGLVDEGFKYFN-MMRKMGIRPSIQHYGCLVDLLGRAGFLE 354
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A +AS +P + V W +LL AC HGNV+M E +K+ + E +G YVL+ N
Sbjct: 355 EAFNLASSLPKD-PGFVTWSSLLAACQTHGNVDMAEVAAQKLADAEPNHGSSYVLLSNAY 413
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ D +R R ++ A+K PG S +
Sbjct: 414 ARAGQWEDLKRTRSRMEAHRAVKKPGLSWI 443
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 132/324 (40%), Positives = 195/324 (60%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFDE+ ERN+ +WN MI+G V G LE AR +F E P +NVVSW +I GY+ R +
Sbjct: 196 LFDEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEV 255
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LF M +P T+++V A G + + +H Y +K G + V+ L+
Sbjct: 256 LVLFEDMQHAG-VKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGI-SIDGFVATALV 313
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y+KCG I AL++F S RK++ +W SIISG + HG G+ A++ F M KPN
Sbjct: 314 DMYSKCGSIEKALEVFN--SCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPN 371
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
VTF+ VL+ACS GL++EG + F+ MV + P I+HYGC++D+LGR G LE+AE++
Sbjct: 372 EVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELV 431
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P + + VVW +LLGAC HGNVE+ ERV +K+LE+ +V + N+ A + R+
Sbjct: 432 QKMPQKEAS-VVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRW 490
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
D +R+ + + K PG S++
Sbjct: 491 KDVMEVRQKMRAQGVRKDPGCSMI 514
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 126/293 (43%), Gaps = 48/293 (16%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
+L N +I G +E AR L + M R+VVSW ++ Y A LF M
Sbjct: 142 DLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMT 201
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
+R ++ N +I Y G
Sbjct: 202 ------------------------------------ERNVESW-----NFMISGYVGVGL 220
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ A ++F + V KN+VSW ++I+G++ G E + FE MQ +KP+ T +SVL
Sbjct: 221 LEEARRVFGETPV--KNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVL 278
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+AC+H G + +G ++ +++ + D L+DM + G +E+A +V + +
Sbjct: 279 SACAHVGALSQG-EWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRK-- 335
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
++ W +++ S HG+ + ++ ++L G+ + V +L+ R G
Sbjct: 336 DISTWNSIISGLSTHGSGQHALQIFSEML--VEGFKPNEVTFVCVLSACSRAG 386
>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g15300-like [Glycine max]
Length = 555
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 133/326 (40%), Positives = 196/326 (60%), Gaps = 8/326 (2%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
KLFDE+P+R+LV+WNVMIT K GE+E AR LF+E P ++VVSW ++ GY N +
Sbjct: 194 KLFDEMPKRDLVSWNVMITAYTKHGEMECARRLFDEAPMKDVVSWNAMVGGYVLHNLNQE 253
Query: 67 ALALFRRMVACEYTE-PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
AL LF M CE E P E+T+L++ A GD + +H + + N
Sbjct: 254 ALELFDEM--CEVGECPDEVTMLSLLSACADLGDXG--EKVHAKIMELNKGKLSTLLGNA 309
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
L+D YAKCG I + +F + K++VSW S+I G A HG +E++ F MQ+ +
Sbjct: 310 LVDMYAKCGNIGKGVCVF--WLIRDKDMVSWNSVIGGLAFHGHAEESLGLFREMQRTKVC 367
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
P+ +TF+ VL ACSH G V+EG ++F M + ++ P+I+H GC++DML RAG L++A
Sbjct: 368 PDEITFVGVLAACSHTGNVDEGNRYFYLMKNKYKIEPNIRHCGCVVDMLARAGLLKEAFD 427
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
+ + E N +VWR+LLGAC HG+VE+ +R T ++L M GDYVL+ N+ A
Sbjct: 428 FIASMKIE-PNAIVWRSLLGACKVHGDVELAKRATEQLLRMRVDQSGDYVLLSNVYASHG 486
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
+ AE +R+++D+ K G S V
Sbjct: 487 EWDGAENVRKLMDDNGVTKTRGSSFV 512
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 135/301 (44%), Gaps = 51/301 (16%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
N+V N ++ K G+L+ A +F++ +VV+W+ +I GY + + A LF M
Sbjct: 141 NVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEM- 199
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
KR ++ N +I Y K G
Sbjct: 200 -----------------------------------PKRDLVSW-----NVMITAYTKHGE 219
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ A +LF++ + K++VSW +++ G+ +H + +EA+E F+ M +V P+ VT LS+L
Sbjct: 220 MECARRLFDEAPM--KDVVSWNAMVGGYVLHNLNQEALELFDEMCEVGECPDEVTMLSLL 277
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+AC+ G + G K K++E + L+DM + G + + V I +
Sbjct: 278 SACADLG--DXGEKVHAKIMELNKGKLSTLLGNALVDMYAKCGNIGKGVCVFWLIRDK-- 333
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERG-YGGDYVLMYNILAGVWRYGDAERLR 314
++V W +++G +FHG+ E + R EM+R D + +LA G+ +
Sbjct: 334 DMVSWNSVIGGLAFHGHAEESLGLFR---EMQRTKVCPDEITFVGVLAACSHTGNVDEGN 390
Query: 315 R 315
R
Sbjct: 391 R 391
>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like, partial [Cucumis sativus]
Length = 610
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 127/330 (38%), Positives = 198/330 (60%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+K KLFD +P R+ ++WN M+ G G++E LFEEMP RNV SW G+I GY
Sbjct: 236 MKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHN 295
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
L F+RM+ P++ T++ V A + G + + +H Y GF I+
Sbjct: 296 GCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKG-SIY 354
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LID Y+KCG I +A+++FE S++ K+L++W S+I G A HG G +A+ F +M+
Sbjct: 355 VGNALIDMYSKCGLIENAMEVFE--SMDLKDLITWNSMICGLATHGCGADALTLFHQMKI 412
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KP+ +TF+ VL +C+H GLVEEG +F+ MV E + P I+HYGC++D+ GRAG L+
Sbjct: 413 NGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLD 472
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + +P E + V+W LLGAC + N+++ E +K++ +E +YVL+ NI
Sbjct: 473 RAIEFVKRMPME-ADAVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIY 531
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ R+ D RL+ ++ + + K PG SL+
Sbjct: 532 GDLGRWKDVARLKILMRDTGSKKLPGCSLI 561
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 117/238 (49%), Gaps = 18/238 (7%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW 95
A LF M RN+V+WT +I GY NR +AL RR+ + ++ + + + +
Sbjct: 177 AYKLFVGMLERNIVAWTSMISGYILCNR----VALARRLF--DLAPERDVVLWNIMVSGY 230
Query: 96 -QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 154
+ GD++ + + R ++ N +++ YA G + + +LFE++ +N+
Sbjct: 231 IEIGDMKAARKLFDTMPYRDTMSW-----NTMLNGYANNGDVEACEQLFEEMP--ERNVF 283
Query: 155 SWTSIISGFAMHGMGKEAVENFERMQ-KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDK 213
SW +I G+A +G E + F+RM ++ PN T ++VL+AC+ G ++ G K+
Sbjct: 284 SWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLG-KWVHV 342
Query: 214 MVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
I LIDM + G +E A +V + ++ +++ W +++ + HG
Sbjct: 343 YAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESM--DLKDLITWNSMICGLATHG 398
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 110/256 (42%), Gaps = 29/256 (11%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACE---- 78
++T V ++ +AR LF+ P V W I GY + LF +M + +
Sbjct: 63 VVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPN 122
Query: 79 -YTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIF 137
+T P + A A + G+ +C++I G E F V+ LID Y+ I
Sbjct: 123 CFTFPLVLKSCAKIGAFVE-GEEIHCEVIKGGLEGNQF------VATTLIDVYSGGRAIG 175
Query: 138 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL--SVL 195
SA KLF + + +N+V+WTS+ISG+ + A F+ L P R L ++
Sbjct: 176 SAYKLF--VGMLERNIVAWTSMISGYILCNRVALARRLFD------LAPERDVVLWNIMV 227
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+ G ++ K FD M D + +++ G +E E++ +P
Sbjct: 228 SGYIEIGDMKAARKLFDTMPYR-----DTMSWNTMLNGYANNGDVEACEQLFEEMPER-- 280
Query: 256 NVVVWRTLLGACSFHG 271
NV W L+G + +G
Sbjct: 281 NVFSWNGLIGGYAHNG 296
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 24/181 (13%)
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202
F D VE W +I G+ + +E V F +M+ + ++PN TF VL +C+ G
Sbjct: 83 FPDPKVEL-----WNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIG 137
Query: 203 LVEEGLKFFDKMVEECEVLP-----DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNV 257
EG + CEV+ + LID+ + A K+ G+ N+
Sbjct: 138 AFVEGEEI------HCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLER--NI 189
Query: 258 VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVV 317
V W +++ V + R+ L ER D VL +++G GD + R++
Sbjct: 190 VAWTSMISGYILCNRVALARRLFD--LAPER----DVVLWNIMVSGYIEIGDMKAARKLF 243
Query: 318 D 318
D
Sbjct: 244 D 244
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 126/324 (38%), Positives = 197/324 (60%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FD PE + +WN+MI G +K G + AR +FE MP R+VVSW+ +I+GY + +R
Sbjct: 193 VFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEG 252
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LF+ M+ E EP+E ++ A G + Q I Y E++ + + LI
Sbjct: 253 LGLFQDMMG-EKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVR-LTVRLGTALI 310
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y+KCG + AL++F + + KN+++W+++I+G A++G GK+A+ F +M+ +KPN
Sbjct: 311 DMYSKCGSVERALEVFHKM--KEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPN 368
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
VTF+ +LNACSH LV+EG FF M + P+ H+ C++D+ GRAG L+QA+ V
Sbjct: 369 EVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVI 428
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P + N +W LL AC HG+ E+GE+V +++LE++ +GG YVL+ NI A R+
Sbjct: 429 KSMPFK-PNSAIWGALLNACRIHGDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRW 487
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
LRR++ ER K PG S +
Sbjct: 488 DRVAELRRMMRERQVSKTPGCSFI 511
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 123/287 (42%), Gaps = 34/287 (11%)
Query: 16 NLVTWNVM-ITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
N V ++ L G + YAR LF + ++ +I Y A+ + M
Sbjct: 67 NFVASRILSFAALSPHGSIPYARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEM 126
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
P T + A + +R + IH + K G+++ + VSN L+ YA CG
Sbjct: 127 TESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSS-EVSVSNFLVQMYASCG 185
Query: 135 CIFSALKLFEDI-----------------------------SVERKNLVSWTSIISGFAM 165
I SA +F+ ++ +++VSW+ +I+G+
Sbjct: 186 LIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQ 245
Query: 166 HGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIK 225
KE + F+ M ++PN ++ L+AC+H G +E+G ++ ++ +E V ++
Sbjct: 246 ESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQG-QWIERYMERKNVRLTVR 304
Query: 226 HYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
LIDM + G +E+A +V + + NV+ W ++ + +G
Sbjct: 305 LGTALIDMYSKCGSVERALEVFHKMKEK--NVLAWSAMINGLAINGQ 349
>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 652
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 127/330 (38%), Positives = 198/330 (60%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+K KLFD +P R+ ++WN M+ G G++E LFEEMP RNV SW G+I GY
Sbjct: 278 MKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHN 337
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
L F+RM+ P++ T++ V A + G + + +H Y GF I+
Sbjct: 338 GCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKG-SIY 396
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LID Y+KCG I +A+++FE S++ K+L++W S+I G A HG G +A+ F +M+
Sbjct: 397 VGNALIDMYSKCGLIENAMEVFE--SMDLKDLITWNSMICGLATHGCGADALTLFHQMKI 454
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KP+ +TF+ VL +C+H GLVEEG +F+ MV E + P I+HYGC++D+ GRAG L+
Sbjct: 455 NGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLD 514
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + +P E + V+W LLGAC + N+++ E +K++ +E +YVL+ NI
Sbjct: 515 RAIEFVKRMPME-ADAVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIY 573
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ R+ D RL+ ++ + + K PG SL+
Sbjct: 574 GDLGRWKDVARLKILMRDTGSKKLPGCSLI 603
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 117/238 (49%), Gaps = 18/238 (7%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW 95
A LF M RN+V+WT +I GY NR +AL RR+ + ++ + + + +
Sbjct: 219 AYKLFVGMLERNIVAWTSMISGYILCNR----VALARRLF--DLAPERDVVLWNIMVSGY 272
Query: 96 -QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 154
+ GD++ + + R ++ N +++ YA G + + +LFE++ +N+
Sbjct: 273 IEIGDMKAARKLFDTMPYRDTMSW-----NTMLNGYANNGDVEACEQLFEEMP--ERNVF 325
Query: 155 SWTSIISGFAMHGMGKEAVENFERMQ-KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDK 213
SW +I G+A +G E + F+RM ++ PN T ++VL+AC+ G ++ G K+
Sbjct: 326 SWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLG-KWVHV 384
Query: 214 MVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
I LIDM + G +E A +V + ++ +++ W +++ + HG
Sbjct: 385 YAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESM--DLKDLITWNSMICGLATHG 440
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 110/256 (42%), Gaps = 29/256 (11%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACE---- 78
++T V ++ +AR LF+ P V W I GY + LF +M + +
Sbjct: 105 VVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPN 164
Query: 79 -YTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIF 137
+T P + A A + G+ +C++I G E F V+ LID Y+ I
Sbjct: 165 CFTFPLVLKSCAKIGAFVE-GEEIHCEVIKGGLEGNQF------VATTLIDVYSGGRAIG 217
Query: 138 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL--SVL 195
SA KLF + + +N+V+WTS+ISG+ + A F+ L P R L ++
Sbjct: 218 SAYKLF--VGMLERNIVAWTSMISGYILCNRVALARRLFD------LAPERDVVLWNIMV 269
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+ G ++ K FD M D + +++ G +E E++ +P
Sbjct: 270 SGYIEIGDMKAARKLFDTMPYR-----DTMSWNTMLNGYANNGDVEACEQLFEEMPER-- 322
Query: 256 NVVVWRTLLGACSFHG 271
NV W L+G + +G
Sbjct: 323 NVFSWNGLIGGYAHNG 338
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 24/181 (13%)
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202
F D VE W +I G+ + +E V F +M+ + ++PN TF VL +C+ G
Sbjct: 125 FPDPKVEL-----WNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIG 179
Query: 203 LVEEGLKFFDKMVEECEVLP-----DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNV 257
EG + CEV+ + LID+ + A K+ G+ N+
Sbjct: 180 AFVEGEEI------HCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLER--NI 231
Query: 258 VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVV 317
V W +++ V + R+ L ER D VL +++G GD + R++
Sbjct: 232 VAWTSMISGYILCNRVALARRLFD--LAPER----DVVLWNIMVSGYIEIGDMKAARKLF 285
Query: 318 D 318
D
Sbjct: 286 D 286
>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 126/324 (38%), Positives = 197/324 (60%), Gaps = 4/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FD + E+NLV+W+ MI+G + G LE AR LFE MP RNVVSW +I GY + + A
Sbjct: 215 VFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADA 274
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
+ LFR+M P+++T+++V A G + + IH + +R + + N L
Sbjct: 275 IELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFI-RRNKIEVGLFLGNALA 333
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D YAKCGC+ A +F ++ ++++SW+ II G AM+G EA F M + L+PN
Sbjct: 334 DMYAKCGCVLEAKGVFHEM--HERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPN 391
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
++F+ +L AC+H GLV++GL++FD M + + P I+HYGC++D+L RAGRL+QAE +
Sbjct: 392 DISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLI 451
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+ +P + NV+VW LLG C + + E GERV +ILE++ + G V + N+ A + R
Sbjct: 452 NSMPMQ-PNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRL 510
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
DA R + + ++K PG S +
Sbjct: 511 DDAASCRLRMRDNKSMKTPGCSWI 534
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 117/259 (45%), Gaps = 47/259 (18%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E NL N ++ K G A+ LF+EM R+VVSW +I GY + A R
Sbjct: 159 ESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKA-----R 213
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M VF + + V +I G YA+
Sbjct: 214 M---------------VFDGMMEKNLVSWSTMISG---------------------YARV 237
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV-VLKPNRVTFL 192
G + A +LFE++ + +N+VSW ++I+G+A + +A+E F +MQ L PN VT +
Sbjct: 238 GNLEEARQLFENMPM--RNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLV 295
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
SVL+AC+H G ++ G K+ + + ++ + L DM + G + +A+ V +
Sbjct: 296 SVLSACAHLGALDLG-KWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHE 354
Query: 253 EITNVVVWRTLLGACSFHG 271
+V+ W ++ + +G
Sbjct: 355 R--DVISWSIIIMGLAMYG 371
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 34/191 (17%)
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVL----KPNRVTFLSVLNACSHGGLVEEG 207
N+ ++ +++ F+ H + F ++VL P+ TF SVL AC+ V EG
Sbjct: 89 NIFAYNALLKAFSQHNAWHTTISYFN--NQLVLPNAPNPDEYTFTSVLKACAGLAQVLEG 146
Query: 208 LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-------ITNVVVW 260
K V + YGC ++ R ++ KV ++ + +VV W
Sbjct: 147 QK----------VHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSW 196
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320
TL+ F G V+ V ++E + V +++G R G+ E R++ +
Sbjct: 197 NTLISGYCFSGMVDKARMVFDGMME------KNLVSWSTMISGYARVGNLEEARQLFE-- 248
Query: 321 NALKFPGRSLV 331
P R++V
Sbjct: 249 ---NMPMRNVV 256
>gi|357140545|ref|XP_003571826.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Brachypodium distachyon]
Length = 489
Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 128/326 (39%), Positives = 200/326 (61%), Gaps = 6/326 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFDE+P N V+WN ++ G K +L AR +F+ MP R+VVSW+ +IDG +
Sbjct: 117 RLFDEIPRPNPVSWNALLDGYAKCRDLSAAREVFDRMPHRDVVSWSAMIDGCVKCGEYRE 176
Query: 67 ALALFRRMVACEY---TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
ALALF M A +++T++++ A GD+R + +H Y ++RGF ++ ++
Sbjct: 177 ALALFEMMEAAATGHGVRANDVTMISMLGACAHLGDLRRGRQMHRYLQERGF-LLNLRLA 235
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
L+D YAKCG I AL++F + V +++ W ++I G A+HGMG E VE F+ MQ
Sbjct: 236 TSLVDMYAKCGAISEALEVFRAVPVASTDVLMWNAMIGGLAVHGMGMETVELFQEMQHSG 295
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
+ P+ +T+L +L+AC HGGLV+E +FF + E + P ++HY CL+D+L RAGRLE+A
Sbjct: 296 VVPDEITYLGLLSACVHGGLVDEAWRFFCSL-EAQGLRPHVEHYACLVDVLSRAGRLEEA 354
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
V +P E +V V +L AC HG VE+GE V R+++ ++ + G Y+ + NI A
Sbjct: 355 YGVVKSMPME-PSVSVLGAILNACHLHGWVELGEVVGRQLVRLQPDHDGRYIGLSNIYAV 413
Query: 304 VWRYGDAERLRRVVDERNALKFPGRS 329
R+ +A++ R+V+ ER K PG S
Sbjct: 414 AKRWQEAKKARKVMSERGLKKIPGFS 439
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 106/239 (44%), Gaps = 37/239 (15%)
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
PS +T + A + R +H + + G +H++N + YA C A +
Sbjct: 58 PSHLTFPFLGRAAARLASPRLALSLHSHPLRLGLLPCDLHIANSFVHMYAACALPDLARR 117
Query: 142 LFE---------------------DISVER--------KNLVSWTSIISGFAMHGMGKEA 172
LF+ D+S R +++VSW+++I G G +EA
Sbjct: 118 LFDEIPRPNPVSWNALLDGYAKCRDLSAAREVFDRMPHRDVVSWSAMIDGCVKCGEYREA 177
Query: 173 VENFERMQKVV----LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG 228
+ FE M+ ++ N VT +S+L AC+H G + G + + ++E L +++
Sbjct: 178 LALFEMMEAAATGHGVRANDVTMISMLGACAHLGDLRRG-RQMHRYLQERGFLLNLRLAT 236
Query: 229 CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME 287
L+DM + G + +A +V +P T+V++W ++G + HG MG EM+
Sbjct: 237 SLVDMYAKCGAISEALEVFRAVPVASTDVLMWNAMIGGLAVHG---MGMETVELFQEMQ 292
>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
Length = 531
Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 130/327 (39%), Positives = 205/327 (62%), Gaps = 7/327 (2%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFDE P ++LV+WNVMIT K G++ AR LF+ P R+VVSW +I GY R
Sbjct: 201 ELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSHKQ 260
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF--HIHVSN 124
A+ LF +M A +P +T+L++ A +GD+ + +H + R F+ + N
Sbjct: 261 AMELFEQMQAMG-EKPDTVTMLSLLSACADSGDMDAGRRLHRFLSGR-FSRIGPSTVLGN 318
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LID YAKCG + SAL++F ++ KN+ +W SII G A+HG EA++ F++M + +
Sbjct: 319 ALIDMYAKCGSMTSALEVF--WLMQDKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQGNV 376
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
KP+ +TF++VL ACSHGG+V++G ++F+ M + + P++KHYGC++DML RAG L++A
Sbjct: 377 KPDEITFVAVLVACSHGGMVDKGHEYFNLMQQRYMIEPNVKHYGCMVDMLSRAGLLKEAF 436
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+ + E N V+WRTLLGAC HG +E+ E +++L+ GD+VL+ NI A V
Sbjct: 437 EFIGTMKIE-PNPVIWRTLLGACRIHGELELAEHANQELLKARSDASGDFVLLSNIYASV 495
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
+ +E +R+++D+ K G ++V
Sbjct: 496 GEWLGSENMRKLMDDSGVNKEAGCAVV 522
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 119/273 (43%), Gaps = 46/273 (16%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E + N +I G+L A +LF+ + V+W+ +I G+ R A LF
Sbjct: 146 ESDAFVRNALIGMHATCGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELF-- 203
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
+ S + L + N +I YAK
Sbjct: 204 -------DESPVKDLVSW--------------------------------NVMITAYAKL 224
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + A +LF+ +++VSW ++ISG+ G K+A+E FE+MQ + KP+ VT LS
Sbjct: 225 GDMAPARELFD--GAPDRDVVSWNAMISGYVRCGSHKQAMELFEQMQAMGEKPDTVTMLS 282
Query: 194 VLNACSHGGLVEEGLKFFDKMVEE-CEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
+L+AC+ G ++ G + + + P LIDM + G + A +V +
Sbjct: 283 LLSACADSGDMDAGRRLHRFLSGRFSRIGPSTVLGNALIDMYAKCGSMTSALEVFWLMQD 342
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
+ NV W +++G + HG+V V +K+L+
Sbjct: 343 K--NVSTWNSIIGGLALHGHVTEAIDVFQKMLQ 373
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 114/260 (43%), Gaps = 23/260 (8%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEY-----TEPSEI 85
G +AR +F+ +P + + +I G A++++ RM P +
Sbjct: 56 GGTAHARLVFDRIPHPDRFMYNTLIRGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDKR 115
Query: 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRG--FNAFHIHVSNCLIDTYAKCGCIFSALKLF 143
T V A G +H + K G +AF V N LI +A CG + +A LF
Sbjct: 116 TFPFVLRACAAMGASETGAQVHAHVVKAGCESDAF---VRNALIGMHATCGDLGAAAALF 172
Query: 144 EDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGL 203
+ + R++ V+W+++ISGFA G A E F+ L V++ ++ A + G
Sbjct: 173 DGEA--REDAVAWSAMISGFARRGDIGAARELFDESPVKDL----VSWNVMITAYAKLGD 226
Query: 204 VEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS--EITNVVVWR 261
+ + FD + D+ + +I R G +QA ++ + + E + V
Sbjct: 227 MAPARELFDGAPDR-----DVVSWNAMISGYVRCGSHKQAMELFEQMQAMGEKPDTVTML 281
Query: 262 TLLGACSFHGNVEMGERVTR 281
+LL AC+ G+++ G R+ R
Sbjct: 282 SLLSACADSGDMDAGRRLHR 301
>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 643
Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 126/325 (38%), Positives = 203/325 (62%), Gaps = 4/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FD++ RN +WNVM+ G +K GELE A+ +F EMP R+ VSW+ +I G N
Sbjct: 193 EIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNE 252
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
+ FR + + P+E+++ V A Q+G +++HG+ EK G+ ++ + V+N L
Sbjct: 253 SFLYFRELQRAGMS-PNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGY-SWIVSVNNAL 310
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y++CG + A +FE + E++ +VSWTS+I+G AMHG G+EAV F M + P
Sbjct: 311 IDMYSRCGNVPMARLVFEGMQ-EKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTP 369
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ ++F+S+L+ACSH GL+EEG +F +M + P+I+HYGC++D+ GR+G+L++A
Sbjct: 370 DGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDF 429
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P T +VWRTLLGACS HGN+E+ E+V +++ E++ GD VL+ N A +
Sbjct: 430 ICQMPIPPT-AIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGK 488
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ D +R+ + + K SLV
Sbjct: 489 WKDVASIRKSMIVQRIKKTTAWSLV 513
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 107/250 (42%), Gaps = 20/250 (8%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
L YAR L P + + ++ GY+ + + ++A+F M+ + P + V
Sbjct: 55 LPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIK 114
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
A+ +R +H K G + H+ V LI Y CGC+ A K+F+++ + N
Sbjct: 115 AVENFRSLRTGFQMHCQALKHGLES-HLFVGTTLIGMYGGCGCVEFARKVFDEM--HQPN 171
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
LV+W ++I+ A E F++M L N ++ +L G +E + F
Sbjct: 172 LVAWNAVITACFRGNDVAGAREIFDKM----LVRNHTSWNVMLAGYIKAGELESAKRIFS 227
Query: 213 KMVEECEV-----LPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC 267
+M +V + I H G + L++A P+E++ V L AC
Sbjct: 228 EMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMS----PNEVSLTGV----LSAC 279
Query: 268 SFHGNVEMGE 277
S G+ E G+
Sbjct: 280 SQSGSFEFGK 289
>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
Length = 594
Score = 246 bits (629), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 127/330 (38%), Positives = 202/330 (61%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + +LFDE+PER++V+W +M+ G G L A LF+EMP RN+VSW+ +I GY ++
Sbjct: 218 LDEARRLFDEMPERDVVSWTIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQI 277
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ AL LF+ M + + E+ + + A + G + + +H Y +K G H
Sbjct: 278 GCYSKALELFKEMQVAK-VKMDEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKV-DAH 335
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+S LID Y+KCG I A K+F++ K + W+S+I G AMH G++A+E F +M +
Sbjct: 336 LSTALIDMYSKCGRIDMAWKVFQETG--DKKVFVWSSMIGGLAMHSFGEKAIELFAKMIE 393
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++P+ +T++++L AC+H GLV+ GL+ F++MVE + P ++HYGC++D+LGRAG L
Sbjct: 394 CGIEPSEITYINILAACTHSGLVDVGLQIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLH 453
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A +V +P + + +WR LL AC H NVE+GE+V R +++ME +YVL N+
Sbjct: 454 DAFRVVETMPVK-ADPAIWRALLSACKLHRNVELGEQVGRILIKMEPQNDMNYVLFSNVY 512
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A V R+ + +LRR + R K PG S +
Sbjct: 513 AAVNRWDISGKLRREMKVRGMQKNPGCSSI 542
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 140/343 (40%), Gaps = 73/343 (21%)
Query: 31 GELEYARSLFE--EMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACE-YTEPSEITI 87
G L YA+ LF+ ++P RN +T +I Y A A + RM+ + Y P++ T
Sbjct: 80 GSLNYAQKLFDTVDIP-RNSFMYTTMIKAYANFGNPREAFAFYSRMLCDQRYVYPNDFTF 138
Query: 88 LAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG------------- 134
VF A + V + H K F F +H N L+D Y K G
Sbjct: 139 TYVFSACSKFNGVFEGKQAHAQMIKFPFE-FGVHSWNSLLDFYGKVGEVGIVVRRVFDKI 197
Query: 135 ---------CIFS----------ALKLFEDIS---------------------------- 147
C+ + A +LF+++
Sbjct: 198 EGPDVVSWNCLINGYVKSGDLDEARRLFDEMPERDVVSWTIMLVGYADAGFLSEASCLFD 257
Query: 148 -VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEE 206
+ ++NLVSW+++I G+ G +A+E F+ MQ +K + V ++L+AC+ G +++
Sbjct: 258 EMPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVAKVKMDEVIVTTLLSACARLGALDQ 317
Query: 207 GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
G ++ +++ + D LIDM + GR++ A KV + V VW +++G
Sbjct: 318 G-RWLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQETGDK--KVFVWSSMIGG 374
Query: 267 CSFHGNVEMGERVTRKILEM-ERGYGGDYVLMYNILAGVWRYG 308
+ H GE+ +M E G + NILA G
Sbjct: 375 LAMHS---FGEKAIELFAKMIECGIEPSEITYINILAACTHSG 414
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 38/170 (22%)
Query: 129 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM---QKVVLK 185
++ G + A KLF+ + + R + + +T++I +A G +EA + RM Q+ V
Sbjct: 75 SFDNLGSLNYAQKLFDTVDIPRNSFM-YTTMIKAYANFGNPREAFAFYSRMLCDQRYVY- 132
Query: 186 PNRVTFLSVLNACSHGGLVEEG----------------------LKFFDKMVEECEVL-- 221
PN TF V +ACS V EG L F+ K+ E V+
Sbjct: 133 PNDFTFTYVFSACSKFNGVFEGKQAHAQMIKFPFEFGVHSWNSLLDFYGKVGEVGIVVRR 192
Query: 222 -------PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
PD+ + CLI+ ++G L++A ++ +P +VV W +L
Sbjct: 193 VFDKIEGPDVVSWNCLINGYVKSGDLDEARRLFDEMPER--DVVSWTIML 240
>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 246 bits (629), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 129/318 (40%), Positives = 206/318 (64%), Gaps = 9/318 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEM--PCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
N+ +I E++ AR +F+++ PC VV++ +I GY R +R N AL+LFR
Sbjct: 155 NVYVCPTLINMYTACNEMDCARRVFDKIWEPC--VVTYNAMITGYARGSRPNEALSLFRE 212
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
+ A +P+++T+L+V + G + + +H Y +K GFN F + V LID YAKC
Sbjct: 213 LQA-RNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRF-VKVDTALIDMYAKC 270
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + A+ +FE+++V ++ +W+++I +A+HG G +AV F+ M+K +P+ +TFL
Sbjct: 271 GSLDDAVCVFENMAV--RDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLG 328
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L ACSH GLVEEG ++F M ++ V+P IKHYGC++D+LGRAGRLE+A + G+P
Sbjct: 329 LLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIR 388
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
T ++WRTLL AC HGNVE+G+RV +I E++ +GGDY+++ N+ A R+ D +
Sbjct: 389 PTP-ILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNLCARAGRWEDVNYV 447
Query: 314 RRVVDERNALKFPGRSLV 331
R++++ER +K PG S V
Sbjct: 448 RKLMNERGVVKIPGCSSV 465
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 120/246 (48%), Gaps = 17/246 (6%)
Query: 32 ELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVAC-----EYTEPSEIT 86
+++A LF+++P ++V + + GY R + A LF +++ +YT PS +
Sbjct: 70 SMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLK 129
Query: 87 ILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI 146
A A+ + + +H K G + +++V LI+ Y C + A ++F+ I
Sbjct: 130 ACASCKALEEG------RQLHCLAIKLGLSE-NVYVCPTLINMYTACNEMDCARRVFDKI 182
Query: 147 SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEE 206
+V++ ++I+G+A EA+ F +Q LKP VT LSVL++C+ G ++
Sbjct: 183 --WEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDL 240
Query: 207 GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
G K+ + V++ +K LIDM + G L+ A V + + + W ++ A
Sbjct: 241 G-KWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENM--AVRDTQAWSAMIMA 297
Query: 267 CSFHGN 272
+ HG+
Sbjct: 298 YAIHGH 303
>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
Length = 635
Score = 246 bits (628), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 126/325 (38%), Positives = 203/325 (62%), Gaps = 4/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FD++ RN +WNVM+ G +K GELE A+ +F EMP R+ VSW+ +I G N
Sbjct: 185 EIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNE 244
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
+ FR + + P+E+++ V A Q+G +++HG+ EK G+ ++ + V+N L
Sbjct: 245 SFLYFRELQRAGMS-PNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGY-SWIVSVNNAL 302
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y++CG + A +FE + E++ +VSWTS+I+G AMHG G+EAV F M + P
Sbjct: 303 IDMYSRCGNVPMARLVFEGMQ-EKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTP 361
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ ++F+S+L+ACSH GL+EEG +F +M + P+I+HYGC++D+ GR+G+L++A
Sbjct: 362 DGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDF 421
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P T +VWRTLLGACS HGN+E+ E+V +++ E++ GD VL+ N A +
Sbjct: 422 ICQMPIPPT-AIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGK 480
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ D +R+ + + K SLV
Sbjct: 481 WKDVASIRKSMIVQRIKKTTAWSLV 505
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 107/250 (42%), Gaps = 20/250 (8%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
L YAR L P + + ++ GY+ + + ++A+F M+ + P + V
Sbjct: 47 LPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIK 106
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
A+ +R +H K G + H+ V LI Y CGC+ A K+F+++ + N
Sbjct: 107 AVENFRSLRTGFQMHCQALKHGLES-HLFVGTTLIGMYGGCGCVEFARKVFDEM--HQPN 163
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
LV+W ++I+ A E F++M L N ++ +L G +E + F
Sbjct: 164 LVAWNAVITACFRGNDVAGAREIFDKM----LVRNHTSWNVMLAGYIKAGELESAKRIFS 219
Query: 213 KMVEECEV-----LPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC 267
+M +V + I H G + L++A P+E++ V L AC
Sbjct: 220 EMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMS----PNEVSLTGV----LSAC 271
Query: 268 SFHGNVEMGE 277
S G+ E G+
Sbjct: 272 SQSGSFEFGK 281
>gi|413938708|gb|AFW73259.1| hypothetical protein ZEAMMB73_606431 [Zea mays]
Length = 488
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 133/328 (40%), Positives = 196/328 (59%), Gaps = 5/328 (1%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
D K+FD + +R +VTWNV++ L++ G+L+ A +F +MP RN VSW II G+ R
Sbjct: 117 DARKVFDGMADRTVVTWNVLLDALIRDGDLDAAWEVFVKMPQRNAVSWNTIISGFARNGW 176
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
+ A+ LF M P E T++ A+ G + + HGY +R F+ +
Sbjct: 177 APVAVDLFIEMTVAYGLAPDEATMVGFVSAVRDIGLLAIGKSAHGYVLRREFS-LDGPLG 235
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
L+ Y +CG + +A F +SV KN+ WTS+I+GFA HG + A+ F M++V
Sbjct: 236 VALVSMYTRCGSMGAAHSCF--LSVTTKNVEHWTSLIAGFAAHGQPENALRLFVEMRQVG 293
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
++PN VTF++VL+ACSHGGLV+EG K+FD M + P I+HYGCL+D+LGRAG L++A
Sbjct: 294 IEPNGVTFVAVLSACSHGGLVDEGFKYFDLM-RSMGIRPMIQHYGCLVDLLGRAGFLKEA 352
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
+AS +P E V+W +LL AC HGNVEM E K+ E + +G YVL+ N A
Sbjct: 353 FNLASNLP-EDPGFVIWSSLLAACRSHGNVEMAELTASKLAEAKPSHGSSYVLLSNTYAR 411
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
++ D++R RR ++E K PG S +
Sbjct: 412 AEQWEDSKRTRRRMEEHRVAKKPGLSWI 439
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 130/316 (41%), Positives = 203/316 (64%), Gaps = 5/316 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
++V WNVMI G V+ GELE AR+LF+EMP R+VVSW +I GY + A+ +FR M
Sbjct: 192 DVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQ 251
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
E P+ +T+++V PA+ + G + + +H Y + + + + LID YAKCG
Sbjct: 252 MAE-VPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDV-LGSALIDMYAKCGS 309
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
I AL++FE + ++N+V+W++II+G AMHG K+ +++FE M++ + P+ VT++ +L
Sbjct: 310 IEKALQVFE--GLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLL 367
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+ACSH GLV EG FFD MV + P I+HYGC++D+LGRAG LE++E++ +P +
Sbjct: 368 SACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPD 427
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
+ V+W+ LLGAC HGNVEMG+RV ++E+ G YV + NI A + + ++R
Sbjct: 428 D-VIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRL 486
Query: 316 VVDERNALKFPGRSLV 331
++ E + K PG S +
Sbjct: 487 MMKEMDVRKDPGCSWI 502
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 124/288 (43%), Gaps = 50/288 (17%)
Query: 32 ELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVF 91
+L+YAR +F M N S+ +I + N AL +F MV EP+ T +VF
Sbjct: 60 DLDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVF 119
Query: 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS---------------------------- 123
A + +R + +HG K G ++ VS
Sbjct: 120 KACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGC 179
Query: 124 -----------------NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 166
N +ID Y + G + A LF+++ ++++VSW +I+G+A
Sbjct: 180 DGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMP--QRSVVSWNVMIAGYAQS 237
Query: 167 GMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH 226
G KEAVE F MQ + PN VT +SVL A S G +E G K+ + D
Sbjct: 238 GHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELG-KWVHLYAVRNNIGVDDVL 296
Query: 227 YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
LIDM + G +E+A +V G+P NVV W T++ + HG +
Sbjct: 297 GSALIDMYAKCGSIEKALQVFEGLPKR--NVVTWSTIIAGLAMHGRAK 342
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 44/177 (24%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV----VSWTGIIDGYTRMN 62
++F+ LP+RN+VTW+ +I GL G + FE+M V V++ G++ +
Sbjct: 315 QVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAG 374
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV 122
N F MV EP I YG
Sbjct: 375 LVNEGRWFFDHMVRVSGLEPR----------------------IEHYG------------ 400
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKEAVENF 176
C++D + G + + +L ++ ++ +++ W +++ MHG MGK E+
Sbjct: 401 --CMVDLLGRAGLLEESEELILNMPIKPDDVI-WKALLGACKMHGNVEMGKRVAEHL 454
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/324 (36%), Positives = 203/324 (62%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LF+++PERN+V+W+ M++G K G++E AR LF++MP +N+V+WT II G+ + A
Sbjct: 242 LFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEA 301
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L+ +M A +P + T++++ A ++G + + +H +K ++VSN L+
Sbjct: 302 TTLYNQMEAAGL-KPDDGTLISILAACAESGLLVLGKKVHASIKKIRIKC-SVNVSNALV 359
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D YAKCG + AL +F ++S+ ++LVSW ++ G AMHG G++A++ F +MQ+ KP+
Sbjct: 360 DMYAKCGRVDKALSIFNEMSM--RDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPD 417
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+VT +++L AC+H G V++GL +F+ M + ++P I+HYGC+ID+LGR GRLE+A ++
Sbjct: 418 KVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLV 477
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P E N V+W TLLGAC H V + E+V +++ +E+ G+Y ++ NI A +
Sbjct: 478 QSMPME-PNDVIWGTLLGACRVHNAVPLAEKVLDRLITLEQSDPGNYSMLSNIFAAAGDW 536
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
+R + K G S +
Sbjct: 537 NSVANMRLQMKSTGVQKPSGASSI 560
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 92/303 (30%), Positives = 148/303 (48%), Gaps = 50/303 (16%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
KLF E+ E++LV+WN MI GLVK G+L AR LF+EM R+ VSW I+DGY + +
Sbjct: 179 KLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAERDAVSWNTILDGYVKAGEMSQ 238
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A LF +M E +++ W + +
Sbjct: 239 AFNLFEKM--------PERNVVS-----W----------------------------STM 257
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+ Y K G + A LF+ + KNLV+WT IISGFA G+ KEA + +M+ LKP
Sbjct: 258 VSGYCKTGDMEMARMLFDKMPF--KNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKP 315
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ T +S+L AC+ GL+ G K +++ + + L+DM + GR+++A +
Sbjct: 316 DDGTLISILAACAESGLLVLGKKVHAS-IKKIRIKCSVNVSNALVDMYAKCGRVDKALSI 374
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER-GYGGDYVLMYNILAGVW 305
+ + + ++V W +L + HG+ GE+ + +M++ G+ D V + IL
Sbjct: 375 FNEM--SMRDLVSWNCMLQGLAMHGH---GEKAIQLFSKMQQEGFKPDKVTLIAILCACT 429
Query: 306 RYG 308
G
Sbjct: 430 HAG 432
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 130/294 (44%), Gaps = 31/294 (10%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM-----VAC 77
+I+ ++ A ++F ++ NV + +I + + ++S A A F M A
Sbjct: 61 LISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFAD 120
Query: 78 EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC-- 135
+T P + A G + Q+IH + EK GF + V N LID+Y+KCG
Sbjct: 121 NFTYP------FLLKACNGKGWLPTVQMIHCHVEKYGFFG-DLFVPNSLIDSYSKCGLLG 173
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ A+KLF ++ K+LVSW S+I G G A + F+ M + + V++ ++L
Sbjct: 174 VNYAMKLFMEMG--EKDLVSWNSMIGGLVKAGDLGRARKLFDEMA----ERDAVSWNTIL 227
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+ G + + F+KM E ++ + ++ + G +E A + +P
Sbjct: 228 DGYVKAGEMSQAFNLFEKMPER-----NVVSWSTMVSGYCKTGDMEMARMLFDKMP--FK 280
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEME-RGYGGDYVLMYNILAGVWRYG 308
N+V W ++ + G + + T +ME G D + +ILA G
Sbjct: 281 NLVTWTIIISGFAEKG---LAKEATTLYNQMEAAGLKPDDGTLISILAACAESG 331
>gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana]
Length = 514
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 133/335 (39%), Positives = 203/335 (60%), Gaps = 11/335 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + +LFDE+P ++ V WNVMITG +K E++ AR LF+ ++VV+W +I GY
Sbjct: 160 IDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNC 219
Query: 62 NRSNGALALFRRMV-ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
AL +F+ M A E+ P +TIL++ A GD+ + +H Y + + I
Sbjct: 220 GYPKEALGIFKEMRDAGEH--PDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSI 277
Query: 121 HVS----NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
+V N LID YAKCG I A+++F V+ ++L +W ++I G A+H + ++E F
Sbjct: 278 YVGTPIWNALIDMYAKCGSIDRAIEVFR--GVKDRDLSTWNTLIVGLALH-HAEGSIEMF 334
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
E MQ++ + PN VTF+ V+ ACSH G V+EG K+F M + + P+IKHYGC++DMLGR
Sbjct: 335 EEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGR 394
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
AG+LE+A + E N +VWRTLLGAC +GNVE+G+ K+L M + GDYVL
Sbjct: 395 AGQLEEAFMFVESMKIE-PNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVL 453
Query: 297 MYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ NI A ++ +++R++ D+ K G SL+
Sbjct: 454 LSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLI 488
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 119/267 (44%), Gaps = 15/267 (5%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G L+YA LF+E+P +V ++ G + + ++L+ M P T V
Sbjct: 26 GALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEK-RGVSPDRYTFTFV 84
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A + N HG + GF + +V N LI +A CG + A +LF+D +
Sbjct: 85 LKACSKLEWRSNGFAFHGKVVRHGF-VLNEYVKNALILFHANCGDLGIASELFDDSAKAH 143
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
K V+W+S+ SG+A G EA+ F+ M ++V + ++ C ++ +
Sbjct: 144 K--VAWSSMTSGYAKRGKIDEAMRLFDEMP----YKDQVAWNVMITGCLKCKEMDSAREL 197
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI--PSEITNVVVWRTLLGACS 268
FD+ E+ D+ + +I G ++A + + E +VV +LL AC+
Sbjct: 198 FDRFTEK-----DVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACA 252
Query: 269 FHGNVEMGERVTRKILEMERGYGGDYV 295
G++E G+R+ ILE YV
Sbjct: 253 VLGDLETGKRLHIYILETASVSSSIYV 279
>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 548
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 133/335 (39%), Positives = 204/335 (60%), Gaps = 11/335 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + +LFDE+P+++ V WNVMITG +K E++ AR LF+ ++VV+W +I GY
Sbjct: 194 IDEAMRLFDEMPDKDQVAWNVMITGCLKCREMDSARELFDRFTEKDVVTWNAMISGYVNC 253
Query: 62 NRSNGALALFRRMV-ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
AL++F+ M A E+ P +TIL++ A GD+ + +H Y + + I
Sbjct: 254 GYPKEALSIFKEMRDAGEH--PDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSI 311
Query: 121 HVS----NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
+V N LID YAKCG I A+++F ++ ++L +W ++I G A+H + +VE F
Sbjct: 312 YVGTPIWNALIDMYAKCGSIDRAIEVFR--GMKDRDLSTWNTLIVGLALHH-AEGSVEMF 368
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
E MQ++ + PN VTF+ V+ ACSH G V+EG K+F M + + P+IKHYGC++DMLGR
Sbjct: 369 EEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGR 428
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
AG LE+A + E N +VWRTLLGAC +GNVE+G+ K+L M + GDYVL
Sbjct: 429 AGLLEEAFMFVESMKIE-PNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVL 487
Query: 297 MYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ NI A ++ +++R++ D+ K G SL+
Sbjct: 488 LSNIYASTGQWDGVQKVRKMFDDTRVKKPTGISLI 522
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 120/267 (44%), Gaps = 15/267 (5%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G L+YA LFEE+P +V ++ G + + +AL+ M P T V
Sbjct: 60 GALKYAHKLFEEIPKPDVSICNHVLRGSAQSLKPEKTVALYTEMEK-RGVSPDRYTFTFV 118
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A + N IHG + GF + +V N LI +A CG + A +LF+D +
Sbjct: 119 LKACSKLEWRSNGFAIHGKVVRHGF-LLNEYVKNALILFHANCGDLGIASELFDDSAKAH 177
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
K V+W+S+ SG+A G EA+ F+ M ++V + ++ C ++ +
Sbjct: 178 K--VAWSSMTSGYAKRGKIDEAMRLFDEMP----DKDQVAWNVMITGCLKCREMDSAREL 231
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI--PSEITNVVVWRTLLGACS 268
FD+ E+ D+ + +I G ++A + + E +VV +LL AC+
Sbjct: 232 FDRFTEK-----DVVTWNAMISGYVNCGYPKEALSIFKEMRDAGEHPDVVTILSLLSACA 286
Query: 269 FHGNVEMGERVTRKILEMERGYGGDYV 295
G++E G+R+ ILE YV
Sbjct: 287 VLGDLETGKRLHIYILETASVSSSIYV 313
>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 133/335 (39%), Positives = 203/335 (60%), Gaps = 11/335 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + +LFDE+P ++ V WNVMITG +K E++ AR LF+ ++VV+W +I GY
Sbjct: 194 IDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNC 253
Query: 62 NRSNGALALFRRMV-ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
AL +F+ M A E+ P +TIL++ A GD+ + +H Y + + I
Sbjct: 254 GYPKEALGIFKEMRDAGEH--PDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSI 311
Query: 121 HVS----NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
+V N LID YAKCG I A+++F V+ ++L +W ++I G A+H + ++E F
Sbjct: 312 YVGTPIWNALIDMYAKCGSIDRAIEVFR--GVKDRDLSTWNTLIVGLALH-HAEGSIEMF 368
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
E MQ++ + PN VTF+ V+ ACSH G V+EG K+F M + + P+IKHYGC++DMLGR
Sbjct: 369 EEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGR 428
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
AG+LE+A + E N +VWRTLLGAC +GNVE+G+ K+L M + GDYVL
Sbjct: 429 AGQLEEAFMFVESMKIE-PNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVL 487
Query: 297 MYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ NI A ++ +++R++ D+ K G SL+
Sbjct: 488 LSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLI 522
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 119/267 (44%), Gaps = 15/267 (5%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G L+YA LF+E+P +V ++ G + + ++L+ M P T V
Sbjct: 60 GALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEK-RGVSPDRYTFTFV 118
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A + N HG + GF + +V N LI +A CG + A +LF+D +
Sbjct: 119 LKACSKLEWRSNGFAFHGKVVRHGF-VLNEYVKNALILFHANCGDLGIASELFDDSAKAH 177
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
K V+W+S+ SG+A G EA+ F+ M ++V + ++ C ++ +
Sbjct: 178 K--VAWSSMTSGYAKRGKIDEAMRLFDEMP----YKDQVAWNVMITGCLKCKEMDSAREL 231
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI--PSEITNVVVWRTLLGACS 268
FD+ E+ D+ + +I G ++A + + E +VV +LL AC+
Sbjct: 232 FDRFTEK-----DVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACA 286
Query: 269 FHGNVEMGERVTRKILEMERGYGGDYV 295
G++E G+R+ ILE YV
Sbjct: 287 VLGDLETGKRLHIYILETASVSSSIYV 313
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 9/191 (4%)
Query: 92 PAIWQN-GDVRNCQLIHGYGEKRGFNAFHIHVSNCLI--DTYAKCGCIFSALKLFEDISV 148
P +WQN ++R + IH G + ++ V LI + + G + A KLF++I
Sbjct: 16 PKLWQNCKNIRTLKQIHASMVVNGLMS-NLSVVGELIYSASLSVPGALKYAHKLFDEIP- 73
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
+ ++ ++ G A ++ V + M+K + P+R TF VL ACS G
Sbjct: 74 -KPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGF 132
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
F K+V VL + LI G L A ++ S + V W ++ +
Sbjct: 133 AFHGKVVRHGFVLNEYVK-NALILFHANCGDLGIASELFDD--SAKAHKVAWSSMTSGYA 189
Query: 269 FHGNVEMGERV 279
G ++ R+
Sbjct: 190 KRGKIDEAMRL 200
>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
Length = 768
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 128/324 (39%), Positives = 193/324 (59%), Gaps = 4/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+F + +++ +W ++ G +K ++E AR +F+EMP RN VSWT +I GY +
Sbjct: 411 VFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPG 470
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LF+ M A P+ ITI+AV G +HGY K + + V+N L+
Sbjct: 471 LELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLD-LDVTVNNALM 529
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D YAK G + ALK+F+++ ++++ SWT++ISG A+HG G A+E F M K PN
Sbjct: 530 DMYAKSGALVLALKIFQEMP--KRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPN 587
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
VT LSVL+ACSH GLV EG F KMV+ + P I+HYGC++D+LGRAG L +A+++
Sbjct: 588 EVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELI 647
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P + + V+WR+LL AC HGN+ + E + I+E+E G Y+L++NI R+
Sbjct: 648 EHMPIK-PDSVIWRSLLSACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRW 706
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
DA + R+ + +R K PG S V
Sbjct: 707 EDALKARKAMRDRRVKKKPGCSWV 730
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 112/266 (42%), Gaps = 35/266 (13%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW 95
A+ +F + ++VSWT +I Y ++ A ++F + P ++ A
Sbjct: 307 AQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGL-RPDSFCVVGAVSACG 365
Query: 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFE----------- 144
D+ N +++HG + + I V N LID Y++ G I A +F+
Sbjct: 366 HRKDLSNGRIVHGMVFRFELGSDPI-VGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWT 424
Query: 145 ----------DISVER--------KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK- 185
DI R +N VSWT++I+G+ + +E F+ M+
Sbjct: 425 SLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDW 484
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
P +T ++VL+ C+ G + G V + + D+ L+DM ++G L A K
Sbjct: 485 PTVITIVAVLSGCADIGAFDLGSSVHG-YVNKTNLDLDVTVNNALMDMYAKSGALVLALK 543
Query: 246 VASGIPSEITNVVVWRTLLGACSFHG 271
+ +P +V W T++ + HG
Sbjct: 544 IFQEMPKR--DVFSWTTMISGLALHG 567
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 6/183 (3%)
Query: 98 GDVRNCQLIHGYGEKRGF-NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 156
G + + IHG G + H++ L++TY + G A K+F I + ++VSW
Sbjct: 265 GSLEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFNHI--QNPDIVSW 322
Query: 157 TSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVE 216
T +IS + +A F + L+P+ + ++AC H + G + MV
Sbjct: 323 TCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNG-RIVHGMVF 381
Query: 217 ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMG 276
E+ D LIDM R+G +E A V + EI +V W +LL ++E
Sbjct: 382 RFELGSDPIVGNALIDMYSRSGAIEVACSVFKTM--EIKDVSSWTSLLNGFIKCNDIEAA 439
Query: 277 ERV 279
R+
Sbjct: 440 RRI 442
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 68/165 (41%), Gaps = 41/165 (24%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP----CRNVVSWTGIIDGYTRMN 62
K+F E+P+R++ +W MI+GL G+ +A F +M N V+ ++ +
Sbjct: 543 KIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSACSHAG 602
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV 122
+LF++MV C +P I YG
Sbjct: 603 LVVEGRSLFQKMVQCHGIKPK----------------------IQHYG------------ 628
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 167
C++D + G + A +L E + ++ +++ W S++S +HG
Sbjct: 629 --CMVDLLGRAGLLREAKELIEHMPIKPDSVI-WRSLLSACLVHG 670
>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 128/330 (38%), Positives = 200/330 (60%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++ LFDE+PERN+++W MI G G++ AR LF+ MP +N+VSW +I GY +
Sbjct: 215 MESARSLFDEMPERNVISWTSMIYGYCNNGDVLSARFLFDAMPEKNLVSWNAMIGGYCQN 274
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ + AL LFR + + EP+E+T++++ PAI G + + +H + +++ +A ++
Sbjct: 275 KQPHEALKLFRELQSSTVFEPNEVTVVSILPAIATLGALELGEWVHRFVQRKKLDA-AVN 333
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V L+D Y KCG I A K+F +I +K +W ++I+GFAM+G+ EA+E F MQ+
Sbjct: 334 VCTSLVDMYLKCGEISKARKVFSEIP--KKETATWNALINGFAMNGLASEALEAFSEMQQ 391
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPN +T VL+ACSHGGLVEEG F M+E + P I+HYGCL+D+LGRAG L+
Sbjct: 392 EGIKPNDITMTGVLSACSHGGLVEEGKGQFKAMIES-GLSPKIEHYGCLVDLLGRAGCLD 450
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AE + +P E N ++ + AC F +V +RV + + ME G G YV+M N+
Sbjct: 451 EAENLIKSMPFE-ANGIILSSFSFACGFSNDVTRAQRVLNQAVNMEPGNNGIYVMMRNLY 509
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ D + + ++ R A K G S +
Sbjct: 510 AMEERWKDVKEINGLMRRRGAKKEVGSSAI 539
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 120/245 (48%), Gaps = 16/245 (6%)
Query: 28 VKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITI 87
K+G L AR +F +MP R++VSWT +I GY R A LF+ M + + +
Sbjct: 148 AKFGNLGLARKVFNDMPDRSLVSWTALIGGYVRRGDMGNAWFLFKLMPG---RDSAAFNL 204
Query: 88 LAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS 147
L + GD+ + + + +R ++ +I Y G + SA LF+ +
Sbjct: 205 L--IDGYVKVGDMESARSLFDEMPERNVISW-----TSMIYGYCNNGDVLSARFLFD--A 255
Query: 148 VERKNLVSWTSIISGFAMHGMGKEAVENFERMQ-KVVLKPNRVTFLSVLNACSHGGLVEE 206
+ KNLVSW ++I G+ + EA++ F +Q V +PN VT +S+L A + G +E
Sbjct: 256 MPEKNLVSWNAMIGGYCQNKQPHEALKLFRELQSSTVFEPNEVTVVSILPAIATLGALEL 315
Query: 207 GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
G ++ + V+ ++ + L+DM + G + +A KV S IP + T W L+
Sbjct: 316 G-EWVHRFVQRKKLDAAVNVCTSLVDMYLKCGEISKARKVFSEIPKKET--ATWNALING 372
Query: 267 CSFHG 271
+ +G
Sbjct: 373 FAMNG 377
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 115/264 (43%), Gaps = 34/264 (12%)
Query: 15 RNLVTWNV-----MITGLVKWGELEYARSLFEEMPCR-NVVSWTGIIDGYTRMNRSNGAL 68
RN + NV IT + +AR LF+ R + +I + M + A
Sbjct: 27 RNAIDANVNILTKFITTCGQLSSTRHARHLFDNRSHRGDTFLCNSMIKSHVVMRQLADAF 86
Query: 69 ALFR--RMVACEYTEPSEITILA----VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV 122
L++ R C + T+LA + A+W+ + HG+ K GF F ++V
Sbjct: 87 TLYKDLRRETCFVPDNFTFTVLAKCCALRMAVWEGLET------HGHVVKIGF-CFDMYV 139
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG-MGKEAVENFERMQK 181
S L+D YAK G + A K+F D+ ++LVSWT++I G+ G MG N + K
Sbjct: 140 STALVDMYAKFGNLGLARKVFNDMP--DRSLVSWTALIGGYVRRGDMG-----NAWFLFK 192
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++ + F +++ G +E FD+M E ++ + +I G +
Sbjct: 193 LMPGRDSAAFNLLIDGYVKVGDMESARSLFDEMPER-----NVISWTSMIYGYCNNGDVL 247
Query: 242 QAEKVASGIPSEITNVVVWRTLLG 265
A + +P + N+V W ++G
Sbjct: 248 SARFLFDAMPEK--NLVSWNAMIG 269
>gi|357143748|ref|XP_003573036.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Brachypodium distachyon]
Length = 484
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 129/325 (39%), Positives = 201/325 (61%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
KLFD +P+R++VT+N MITGL++ G + AR +F+EMP + VSWT +IDG + R +
Sbjct: 127 KLFDSMPDRSVVTYNTMITGLMRNGLVAAAREVFDEMPAPDKVSWTALIDGCVKNGRHDE 186
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ F M+ + EP +T++A A + G + +H + + ++ V+N L
Sbjct: 187 AIDCFHSMLR-DGVEPDYVTLVAAISACAEVGALGLGMWVHRFVVDKRLE-HNVRVANSL 244
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YA+CG + A ++F I ++ +VSW S+I GFA +G +AVE+FE M++ KP
Sbjct: 245 IDMYARCGQVDFARQVFGRI--RKRTVVSWNSMIVGFAANGQYADAVEHFEAMRREGFKP 302
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ VTF VL ACSH GL +EGL+++D M E + ++HYGC++D+LGRAGRL +A +V
Sbjct: 303 DTVTFTGVLTACSHAGLTDEGLRYYDAMRTEHGIAARMEHYGCVVDLLGRAGRLGEAMRV 362
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P N VV LL C HG+V++ E++ + +LE + G +YVL+ NI A V +
Sbjct: 363 VESMPMR-PNEVVLGALLAGCRMHGDVDLAEQLMQHLLEQDPGGDSNYVLLSNIYAAVGK 421
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+G A ++R ++ R K PG+S V
Sbjct: 422 WGGAGKVRSLMKSRGVKKRPGQSTV 446
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 137/328 (41%), Gaps = 50/328 (15%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT-EPSEITILAVFPAI 94
A S +P R+VVSWT I R GA A M++ P+++T+L V A
Sbjct: 19 ATSKPRRLPPRDVVSWTSAIARPAREGDLQGAAAALSAMLSSPAAPPPNDVTLLTVLSAC 78
Query: 95 WQNGD-----------------VRNCQLIHGYGEKRGFNAFHI-HVS------------- 123
+ + C L+ R + A + H++
Sbjct: 79 AGDSSSALARPLALSLHALAVKLFPCNLLLCTCLARFYLASRLPHLAIKLFDSMPDRSVV 138
Query: 124 --NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
N +I + G + +A ++F+++ K VSWT++I G +G EA++ F M +
Sbjct: 139 TYNTMITGLMRNGLVAAAREVFDEMPAPDK--VSWTALIDGCVKNGRHDEAIDCFHSMLR 196
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++P+ VT ++ ++AC+ G + G+ + + V + + +++ LIDM R G+++
Sbjct: 197 DGVEPDYVTLVAAISACAEVGALGLGM-WVHRFVVDKRLEHNVRVANSLIDMYARCGQVD 255
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A +V I VV W +++ F N + + V G+ D V +L
Sbjct: 256 FARQVFGRIRKR--TVVSWNSMI--VGFAANGQYADAVEHFEAMRREGFKPDTVTFTGVL 311
Query: 302 -----AGV----WRYGDAERLRRVVDER 320
AG+ RY DA R + R
Sbjct: 312 TACSHAGLTDEGLRYYDAMRTEHGIAAR 339
>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 499
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 129/325 (39%), Positives = 202/325 (62%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++F+E ++V+W+ ++ V+ GELE AR +F++MP ++VVSWT ++ GY++ N S
Sbjct: 178 RVFNETVGVDVVSWSGLVLAHVRGGELELARQVFDDMPEKDVVSWTAMVSGYSKANCSRE 237
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL LF M P E+TI++V A GDV +H Y + GF + + + N L
Sbjct: 238 ALELFWEMSDAG-IRPDEVTIVSVISACTNLGDVETGMNVHSYINENGF-GWMVSLCNAL 295
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
I+ YAKCGC+ A ++F ++ +RK+L++W S+IS A HG ++A E F M + P
Sbjct: 296 INMYAKCGCVDRAWRVFNNM--KRKSLITWNSMISACANHGYAEDAFELFSCMLNSGIAP 353
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +TFL++L A +H GLV+EG + F M + + I+HYGC++DMLGRAGRLE+A ++
Sbjct: 354 DGITFLALLIAYTHKGLVDEGYRLFQIMERDYGIEASIEHYGCIVDMLGRAGRLEEAYEL 413
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P +N +VW LL AC +G+V MGERV +K+LE++ GG Y+L+ +I R
Sbjct: 414 IVTMPIP-SNDIVWGALLAACRIYGDVNMGERVVKKLLELKPDEGGYYILLRDIYVASGR 472
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+A +R+ + E A+K PG S V
Sbjct: 473 TAEANHIRQAMQESGAMKNPGYSWV 497
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 136/287 (47%), Gaps = 56/287 (19%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G+L YA+ LF++MP N + II GY + + + + LF +M + +P E T +
Sbjct: 64 GDLPYAQRLFDQMPQPNTFFYNTIIRGYAKSSSPSYCVNLFNQMRQ-NHVDPDEFTFNFL 122
Query: 91 FPAIWQNGDVRN------CQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLF- 143
A + V N C IHG K GF + H+ V N LI+ YA G +A ++F
Sbjct: 123 IKARSRVHKVHNFPSTLECDEIHGAVFKYGFCS-HLFVQNALINLYAVKGSPAAAWRVFN 181
Query: 144 EDISVE----------------------------RKNLVSWTSIISGFAMHGMGKEAVEN 175
E + V+ K++VSWT+++SG++ +EA+E
Sbjct: 182 ETVGVDVVSWSGLVLAHVRGGELELARQVFDDMPEKDVVSWTAMVSGYSKANCSREALEL 241
Query: 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF--------FDKMVEECEVLPDIKHY 227
F M ++P+ VT +SV++AC++ G VE G+ F MV C
Sbjct: 242 FWEMSDAGIRPDEVTIVSVISACTNLGDVETGMNVHSYINENGFGWMVSLCNA------- 294
Query: 228 GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
LI+M + G +++A +V + + + +++ W +++ AC+ HG E
Sbjct: 295 --LINMYAKCGCVDRAWRVFNNMKRK--SLITWNSMISACANHGYAE 337
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 129/325 (39%), Positives = 199/325 (61%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD++PER+LV+ M+T K GEL+ ARSLFE M R+VV W +I GY + N
Sbjct: 197 QLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNE 256
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
+L LFRRM+ + P+E+T+LAV A Q G + + + IH Y E +G ++HV L
Sbjct: 257 SLKLFRRMLVAKAI-PNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQ-INVHVGTAL 314
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y+KCG + A +F+ I K++V+W S+I G+AMHG + A++ FE M + KP
Sbjct: 315 IDMYSKCGSLEDARLVFDRI--RDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKP 372
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+TF+ +L+AC HGGLVEEG FF M ++ + P I+HYGC++++LGRAG LE+A +
Sbjct: 373 TDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGL 432
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ + + V+W TLLG C H N+++GE + + +++ + G YVL+ N+ A
Sbjct: 433 VKNM-TIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLANSGTYVLLSNMYAATGN 491
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ ++R ++ E K G S +
Sbjct: 492 WEGVAKMRTLMKEHGIEKEHGCSSI 516
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 123/271 (45%), Gaps = 40/271 (14%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G L+ + +F NV S++ II + + + A + +M++C EP+ T +V
Sbjct: 93 GRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCG-VEPNAFTFSSV 151
Query: 91 FPAI-WQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS-- 147
+ ++G V +CQ I K G + ++V L+D YA+ G + A +LF+ +
Sbjct: 152 LKSCSLESGKVLHCQAI-----KLGLGS-DLYVRTGLVDVYARGGDVVCARQLFDKMPER 205
Query: 148 ---------------------------VERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
++ +++V W +I G+A G+ E+++ F RM
Sbjct: 206 SLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRML 265
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
PN VT L+VL+AC G +E G ++ +E + ++ LIDM + G L
Sbjct: 266 VAKAIPNEVTVLAVLSACGQLGALESG-RWIHSYIENKGIQINVHVGTALIDMYSKCGSL 324
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
E A V I + +VV W +++ + HG
Sbjct: 325 EDARLVFDRIRDK--DVVAWNSMIVGYAMHG 353
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM 43
L+D +FD + ++++V WN MI G G ++A LFEEM
Sbjct: 324 LEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEM 365
>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
Length = 551
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 122/326 (37%), Positives = 202/326 (61%), Gaps = 6/326 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FDE+ ER++V+WN++I+ + G++ A +LF MP + +V+WT ++ GYT + G
Sbjct: 175 KVFDEMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPG 234
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ FR M E EP +++I+AV PA Q G + + I+ Y ++ G H+ N L
Sbjct: 235 AVDAFRSM-QTEGFEPDDVSIVAVLPACAQLGTLELGRWIYAYCKRHGM-LTSTHICNAL 292
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV-VLK 185
++ YAKCGCI AL+LF+ ++ K+++SW+++I G A HG EAV F M+K ++
Sbjct: 293 MEMYAKCGCIDQALQLFDGMA--DKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVR 350
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN +TF+ +L+ACS+ GLV+EGL FD+M + V P ++HYGC++D+LGR+G++ +A
Sbjct: 351 PNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALD 410
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
+ +P + VW +LL AC HG+V+ +++E+E G+ V++ N+ A
Sbjct: 411 LVRDMPVP-ADAKVWGSLLSACRSHGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAAR 469
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
R+ D R+ + R+ K PG SL+
Sbjct: 470 RWSDVASTRKAIRSRSMRKTPGCSLI 495
>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 128/324 (39%), Positives = 194/324 (59%), Gaps = 4/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+F + +++ +W ++ G +K ++E AR +F+EMP RN VSWT +I GY +
Sbjct: 160 VFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPG 219
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LF+ M A P+ ITI+AV G +HGY K + + V+N L+
Sbjct: 220 LELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLD-LDVTVNNALM 278
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D YAK G + ALK+F+++ ++++ SWT++ISG A+HG G A+E F M K + PN
Sbjct: 279 DMYAKSGALVLALKIFQEMP--KRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPN 336
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
VT LSVL+ACSH GLV EG F KMV+ + P I+HYGC++D+LGRAG L +A+++
Sbjct: 337 EVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELI 396
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P + + V+WR+LL AC HGN+ + E + I+E+E G Y+L++NI R+
Sbjct: 397 EHMPIK-PDSVIWRSLLSACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRW 455
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
DA + R+ + +R K PG S V
Sbjct: 456 EDALKARKAMRDRRVKKKPGCSWV 479
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 112/267 (41%), Gaps = 35/267 (13%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW 95
A+ +F + ++VSWT +I Y ++ A ++F + P ++ A
Sbjct: 56 AQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFH-SGLRPDSFCVVGAVSACG 114
Query: 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFE----------- 144
D+ N +++HG + + I V N LID Y++ G I A +F+
Sbjct: 115 HRKDLSNGRIVHGMVFRFELGSDPI-VGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWT 173
Query: 145 ----------DISVER--------KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK- 185
DI R +N VSWT++I+G+ + +E F+ M+
Sbjct: 174 SLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDW 233
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
P +T ++VL+ C+ G + G V + + D+ L+DM ++G L A K
Sbjct: 234 PTVITIVAVLSGCADIGAFDLG-SSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALK 292
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGN 272
+ +P +V W T++ + HG
Sbjct: 293 IFQEMPKR--DVFSWTTMISGLALHGK 317
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 6/183 (3%)
Query: 98 GDVRNCQLIHGYGEKRGF-NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 156
G + + IHG G + H++ L++TY + G A K+F I + ++VSW
Sbjct: 14 GSLEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFNHI--QNPDIVSW 71
Query: 157 TSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVE 216
T +IS + +A F + L+P+ + ++AC H + G + MV
Sbjct: 72 TCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNG-RIVHGMVF 130
Query: 217 ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMG 276
E+ D LIDM R+G +E A V + EI +V W +LL ++E
Sbjct: 131 RFELGSDPIVGNALIDMYSRSGAIEVACSVFKTM--EIKDVSSWTSLLNGFIKCNDIEAA 188
Query: 277 ERV 279
R+
Sbjct: 189 RRI 191
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 68/165 (41%), Gaps = 41/165 (24%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP----CRNVVSWTGIIDGYTRMN 62
K+F E+P+R++ +W MI+GL G+ +A F +M N V+ ++ +
Sbjct: 292 KIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAG 351
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV 122
+LF++MV C +P I YG
Sbjct: 352 LVVEGRSLFQKMVQCHGIKPK----------------------IQHYG------------ 377
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 167
C++D + G + A +L E + ++ +++ W S++S +HG
Sbjct: 378 --CMVDLLGRAGLLREAKELIEHMPIKPDSVI-WRSLLSACLVHG 419
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 126/329 (38%), Positives = 196/329 (59%), Gaps = 6/329 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ +LFD +P+RNL TWN +I G + E++ A LF +MP R+++SWT +I+ Y++
Sbjct: 162 MSSAGRLFDMMPDRNLATWNTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQN 221
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R AL +F M A P E+T+ V A G + + IH Y + GFN ++
Sbjct: 222 KRFREALGVFNEM-AKHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFN-LDVY 279
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ + LID YAKCG + +L +F + KNL W S+I G A+HG +EA+ F++M++
Sbjct: 280 IGSALIDMYAKCGSLDRSLLMF--FKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMER 337
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPN VTF+SVL+AC+H GL+EEG K F M + + P ++HYGC++D+L +AG LE
Sbjct: 338 EKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLE 397
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++ + E N V+W LL C H N+E+ + K++ +E G G Y L+ N+
Sbjct: 398 EALQLIRTMKLE-PNAVIWGALLSGCKLHRNLEIAQVAANKLMVLEPGNSGYYTLLVNMN 456
Query: 302 AGVWRYGDAERLRRVVDERNALK-FPGRS 329
A V R+G+A ++R + E+ K PG S
Sbjct: 457 AEVNRWGEAAKIRLTMKEQGVEKRCPGSS 485
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 42/165 (25%)
Query: 148 VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS-------- 199
+E N+ + ++I GF +A+E + +M + + P TF S++ AC
Sbjct: 40 MEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFA 99
Query: 200 ---HG------------------------GLVEEGLKFFDKMVEECEVLPDIKHYGCLID 232
HG G +EE ++ FD+M E D+ + ++
Sbjct: 100 EAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPER-----DVFAWTTMVS 154
Query: 233 MLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGE 277
L R G + A ++ +P N+ W TL+ + V++ E
Sbjct: 155 GLVRVGDMSSAGRLFDMMPDR--NLATWNTLIDGYARLREVDVAE 197
>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
Length = 551
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 122/326 (37%), Positives = 202/326 (61%), Gaps = 6/326 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FDE+ ER++V+WN++I+ + G++ A +LF MP + +V+WT ++ GYT + G
Sbjct: 175 KVFDEMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPG 234
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ FR M E EP +++I+AV PA Q G + + I+ Y ++ G H+ N L
Sbjct: 235 AVDAFRSM-QTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGM-LTSTHICNAL 292
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV-VLK 185
++ YAKCGCI AL+LF+ ++ K+++SW+++I G A HG EAV F M+K ++
Sbjct: 293 MEMYAKCGCIDQALQLFDGMA--DKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVR 350
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN +TF+ +L+ACS+ GLV+EGL FD+M + V P ++HYGC++D+LGR+G++ +A
Sbjct: 351 PNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALD 410
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
+ +P + VW +LL AC HG+V+ +++E+E G+ V++ N+ A
Sbjct: 411 LVRDMPVP-ADAKVWGSLLSACRSHGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAAR 469
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
R+ D R+ + R+ K PG SL+
Sbjct: 470 RWSDVASTRKAIRSRSMRKTPGCSLI 495
>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
Length = 551
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 122/326 (37%), Positives = 202/326 (61%), Gaps = 6/326 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FDE+ ER++V+WN++I+ + G++ A +LF MP + +V+WT ++ GYT + G
Sbjct: 175 KVFDEMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPG 234
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ FR M E EP +++I+AV PA Q G + + I+ Y ++ G H+ N L
Sbjct: 235 AVDAFRSM-QTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGM-LTSTHICNAL 292
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV-VLK 185
++ YAKCGCI AL+LF+ ++ K+++SW+++I G A HG EAV F M+K ++
Sbjct: 293 MEMYAKCGCIDQALQLFDGMA--DKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVR 350
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN +TF+ +L+ACS+ GLV+EGL FD+M + V P ++HYGC++D+LGR+G++ +A
Sbjct: 351 PNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALD 410
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
+ +P + VW +LL AC HG+V+ +++E+E G+ V++ N+ A
Sbjct: 411 LVRDMPVP-ADAKVWGSLLSACRSHGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAAR 469
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
R+ D R+ + R+ K PG SL+
Sbjct: 470 RWSDVASTRKAIRSRSMRKTPGCSLI 495
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 129/329 (39%), Positives = 197/329 (59%), Gaps = 7/329 (2%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
G ++FDE+ +R++++W +I K G +E A LF+ +P +++V+WT ++ GY + R
Sbjct: 194 GHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARP 253
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN-AFHIHVS 123
AL +F RM A + E+T++ V A Q G + + E+ GF ++ V
Sbjct: 254 REALEVFERMQAAG-VKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVG 312
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
+ LID YAKCG + A K+FE +E +N+ S++S+I GFAMHG+ A+E F+ M K
Sbjct: 313 SALIDMYAKCGSVEDAYKVFE--RMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTE 370
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECE-VLPDIKHYGCLIDMLGRAGRLEQ 242
+KPNRVTF+ VL ACSH G+VE+G + F M+EEC V P HY C++D+LGRAGRLE+
Sbjct: 371 IKPNRVTFIGVLTACSHAGMVEQGQQLF-AMMEECHGVAPSEDHYACMVDLLGRAGRLEE 429
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302
A + +P + VW LLGAC HGN +M + + E+E G+Y+L+ NI A
Sbjct: 430 ALNLVKMMPMN-PHGGVWGALLGACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYA 488
Query: 303 GVWRYGDAERLRRVVDERNALKFPGRSLV 331
R+ D ++R+++ + K PG S V
Sbjct: 489 SAGRWDDVSKVRKLMRAKGLKKNPGCSWV 517
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 119/268 (44%), Gaps = 35/268 (13%)
Query: 35 YARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAI 94
Y R +F+++ N WT +I GY ++ L+ M + P T A+ A
Sbjct: 91 YPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRR-QGIGPVSFTFTALLKAC 149
Query: 95 WQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI-------- 146
DV + +H G ++V N LID Y KCGC+ ++F+++
Sbjct: 150 SAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISW 209
Query: 147 ---------------------SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
+ K++V+WT++++G+A + +EA+E FERMQ +K
Sbjct: 210 TSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVK 269
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP--DIKHYGCLIDMLGRAGRLEQA 243
+ VT + V++AC+ G + + + E+ P ++ LIDM + G +E A
Sbjct: 270 TDEVTLVGVISACAQLGAAKYA-NWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDA 328
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHG 271
KV + E NV + +++ + HG
Sbjct: 329 YKVFERM--EERNVYSYSSMIVGFAMHG 354
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 2/128 (1%)
Query: 147 SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEE 206
VE N WT++I G+A+ G E+V + M++ + P TF ++L ACS V
Sbjct: 98 QVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNL 157
Query: 207 GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
G + + + D+ LIDM + G L +V + +V+ W +L+ A
Sbjct: 158 GRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDR--DVISWTSLIVA 215
Query: 267 CSFHGNVE 274
+ GN+E
Sbjct: 216 YAKVGNME 223
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 122/325 (37%), Positives = 201/325 (61%), Gaps = 4/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD++P R+ ++WN M+ G GE+E +F+EMP RNV SW G+I GY + +
Sbjct: 228 ELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSE 287
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
L F+RM+ + P++ T++AV A + G + + +H Y E G+ ++ V N L
Sbjct: 288 TLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKG-NLFVGNVL 346
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YAKCG I +A+ +F ++RK+++SW +II+G A+HG +A+ F+RM+ +P
Sbjct: 347 IDMYAKCGVIENAVVVFN--CLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEP 404
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ VTF+ +L+AC+H GLV++G +F MV+ ++P I+HYGC++D+LGRAG L+QA
Sbjct: 405 DGVTFVGILSACTHMGLVKDGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNF 464
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E + V+W LLGAC + NVE+ E ++++E+E ++V++ NI + R
Sbjct: 465 IRKMPIE-PDAVIWAALLGACRLYKNVEIAELALQRLIELEPNNPANFVMVSNIYKDLGR 523
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
D RL+ + + K PG S++
Sbjct: 524 SEDVARLKIAMRDTGFRKLPGCSVI 548
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 110/250 (44%), Gaps = 31/250 (12%)
Query: 24 ITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPS 83
IT ++ + +AR LF+++P N +W + GY + + LF + P+
Sbjct: 51 ITTCSRFKRIHHARKLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIA-GMPN 109
Query: 84 EITILAVFPAIWQNGDVRNCQLIHGYGEKRGF--NAFHIHVSNCLIDTYAKCGCIFSALK 141
T + + + VR + +H K GF N+F V+ LID Y+K GC+ A K
Sbjct: 110 CFTFPMIIKSCGKLEGVREGEEVHCCATKHGFKSNSF---VATSLIDMYSKKGCVEDAYK 166
Query: 142 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR-VTFLSVLNACSH 200
+F ++ +N+V WT+II+G+ + G F+ L P R V SVL +
Sbjct: 167 VFGEM--HERNVVVWTAIINGYILCGDVVSGRRLFD------LAPERDVVMWSVLIS--- 215
Query: 201 GGLVEE-----GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
G +E + FDKM D + +++ G +E EKV +P
Sbjct: 216 -GYIESKNMAAARELFDKMPNR-----DTMSWNAMLNGYAVNGEVEMFEKVFDEMPER-- 267
Query: 256 NVVVWRTLLG 265
NV W L+G
Sbjct: 268 NVFSWNGLIG 277
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 13/162 (8%)
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V+ I T ++ I A KLF+ I + N +W ++ G+ +G ++ V F + +
Sbjct: 46 VAPNFITTCSRFKRIHHARKLFDKIP--QPNTATWNAMFRGYLQNGHHRDTVVLFGELNR 103
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG----CLIDMLGRA 237
+ PN TF ++ +C V EG + V C K LIDM +
Sbjct: 104 IAGMPNCFTFPMIIKSCGKLEGVREG-----EEVHCCATKHGFKSNSFVATSLIDMYSKK 158
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERV 279
G +E A KV + NVVVW ++ G+V G R+
Sbjct: 159 GCVEDAYKVFGEMHER--NVVVWTAIINGYILCGDVVSGRRL 198
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 130/330 (39%), Positives = 198/330 (60%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+D +FD++ ER+ TWN MITG + +++ A LF EM R+VVSWT +I GY +
Sbjct: 61 LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ +L +F +M + + +V A + + H Y + GF A I
Sbjct: 121 GYGDESLNVFNQMRKTG-MKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGF-ALDIV 178
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V + L+D YAK G + A ++F+ + ++N VSW SII+G A HG G +AV FE+M +
Sbjct: 179 VGSALVDMYAKSGSMEDACQVFDKMP--QRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQ 236
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPN ++F+ VL+ACSH GLV EG +F+ M + ++PD+ HY C+ID+LGRAG L+
Sbjct: 237 AGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLD 296
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AE +G+P E +V VW LLGAC HGN E+ +R+ +L ME G YVL+ NI
Sbjct: 297 EAENFINGMPVE-PDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIY 355
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ DA ++R+++ +R +K PG S +
Sbjct: 356 AAAGQWDDAAKVRKLMKDRGVMKQPGYSWI 385
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 104/220 (47%), Gaps = 33/220 (15%)
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+P++ T+ V A + + H Y K GF + + V L+ YA+CG + A
Sbjct: 7 KPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFES-DVVVQTALVHMYARCGSLEDAG 65
Query: 141 KLFEDIS-----------------------------VERKNLVSWTSIISGFAMHGMGKE 171
+F+ +S + +++VSWT++I+G+A +G G E
Sbjct: 66 HVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDE 125
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLI 231
++ F +M+K +K +R SVL+AC+ +E G +F +V+ L DI L+
Sbjct: 126 SLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFAL-DIVVGSALV 184
Query: 232 DMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
DM ++G +E A +V +P N V W +++ C+ HG
Sbjct: 185 DMYAKSGSMEDACQVFDKMPQR--NEVSWNSIITGCAQHG 222
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 122/328 (37%), Positives = 192/328 (58%), Gaps = 4/328 (1%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ KLF E+P R+++ WN ++ G G +E LFEEMP RN+ SW +I GY
Sbjct: 251 EARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGL 310
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
L F+RM++ P++ T++ V A + G + + +H Y E G +++V
Sbjct: 311 FFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKG-NVYVG 369
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N L+D YAKCG I +A+ +F ++ K+L+SW ++I G AMH G +A+ F +M+
Sbjct: 370 NALMDMYAKCGIIENAISVFR--GMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAG 427
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
KP+ +TF+ +L AC+H GLVE+G +F M ++ ++P I+HYGC++DML RAGRLEQA
Sbjct: 428 QKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQA 487
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
+P E + V+W LLGAC + NVE+ E ++++E+E +YV++ NI
Sbjct: 488 MAFVRKMPVE-ADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGD 546
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
R+ D RL+ + + K PG SL+
Sbjct: 547 AGRWEDVARLKVAMRDTGFKKLPGCSLI 574
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 108/251 (43%), Gaps = 19/251 (7%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
++T + YAR LF+++P N+ W + GY + + LF +M + P
Sbjct: 76 LVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMD-IRP 134
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
+ T V + + + + +H + K GF + V LID Y+ G + A K+
Sbjct: 135 NCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRG-NPFVGTTLIDMYSAGGTVGDAYKI 193
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL--SVLNACSH 200
F ++ +N+V+WTS+I+G+ + A F+ L P R L +++
Sbjct: 194 FCEMF--ERNVVAWTSMINGYILSADLVSARRLFD------LAPERDVVLWNIMVSGYIE 245
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
GG + E K F +M D+ + ++ G +E E + +P N+ W
Sbjct: 246 GGDMVEARKLFHEMPNR-----DVMFWNTVLKGYATNGNVEALEGLFEEMPER--NIFSW 298
Query: 261 RTLLGACSFHG 271
L+G + +G
Sbjct: 299 NALIGGYAHNG 309
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 12/206 (5%)
Query: 114 GFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAV 173
GF ++ +++ L+ A + A +LF+ I N+ W S+ G+A +E V
Sbjct: 65 GFQ-YNEYITPKLVTICATLKRMTYARQLFDQIP--DPNIALWNSMFRGYAQSESYREVV 121
Query: 174 ENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDM 233
F +M+ + ++PN TF VL +C + EG + ++ +C + LIDM
Sbjct: 122 FLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLI-KCGFRGNPFVGTTLIDM 180
Query: 234 LGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD 293
G + A K+ + NVV W +++ ++ R+ L ER D
Sbjct: 181 YSAGGTVGDAYKIFCEMFER--NVVAWTSMINGYILSADLVSARRLFD--LAPER----D 232
Query: 294 YVLMYNILAGVWRYGDAERLRRVVDE 319
VL +++G GD R++ E
Sbjct: 233 VVLWNIMVSGYIEGGDMVEARKLFHE 258
>gi|15217517|ref|NP_174603.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75168867|sp|Q9C501.1|PPR70_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g33350
gi|12322383|gb|AAG51215.1|AC051630_12 unknown protein; 15445-13829 [Arabidopsis thaliana]
gi|12322567|gb|AAG51281.1|AC027035_4 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332193465|gb|AEE31586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 538
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 123/328 (37%), Positives = 202/328 (61%), Gaps = 7/328 (2%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFDE+ ERN+V+W M++G + G++ A +LFE+MP R+V SW I+ T+
Sbjct: 183 QLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLE 242
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A++LFRRM+ P+E+T++ V A Q G ++ + IH + +R ++ + VSN L
Sbjct: 243 AVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSS-DVFVSNSL 301
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV--- 183
+D Y KCG + A +F+ S +K+L +W S+I+ FA+HG +EA+ FE M K+
Sbjct: 302 VDLYGKCGNLEEASSVFKMAS--KKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNIND 359
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
+KP+ +TF+ +LNAC+HGGLV +G +FD M + P I+HYGCLID+LGRAGR ++A
Sbjct: 360 IKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDEA 419
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
+V S + + + +W +LL AC HG++++ E + ++ + GG +M N+
Sbjct: 420 LEVMSTMKMK-ADEAIWGSLLNACKIHGHLDLAEVAVKNLVALNPNNGGYVAMMANLYGE 478
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
+ + +A R R+++ +NA K PG S +
Sbjct: 479 MGNWEEARRARKMIKHQNAYKPPGWSRI 506
>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
Length = 546
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 131/345 (37%), Positives = 195/345 (56%), Gaps = 18/345 (5%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + KLFDE+PE+N V+WN +I+G VK G+L AR +F+EMP RNVVS+T +IDGY +
Sbjct: 205 LVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKS 264
Query: 62 NRSNGA---------------LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLI 106
A AL R+ A +P E ++++ A Q G + + +
Sbjct: 265 GDMASARFVFEEAPERDVVAWSALIFRVCAEWNVKPDEFIMVSLMSACSQMGSLELAKWV 324
Query: 107 HGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 166
Y K + HV LID AKCG + A KLFE++ +++L+S+ S++ G ++H
Sbjct: 325 DDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEM--PKRDLISYCSMMQGLSIH 382
Query: 167 GMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH 226
G G +AV F RM L P+ V F +L ACS GLV+EG +F+ M + ++P H
Sbjct: 383 GCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDH 442
Query: 227 YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM 286
Y C++D+LGRAGRL++A ++ +P E + W LLGAC H ++E+GE V ++ E+
Sbjct: 443 YACMVDLLGRAGRLKEAYELLKSMPVE-PHAGAWGALLGACKLHCDIELGEVVADQLFEL 501
Query: 287 ERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
E G+YVL+ NI A ++ D LR + ER K PG S +
Sbjct: 502 EPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCSWI 546
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 127/281 (45%), Gaps = 33/281 (11%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
K GE+ AR +F+EM RNVVSWT +I GY + A LF M E + ++
Sbjct: 170 KCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEM-----PEKNAVSWN 224
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
A+ + GD+R+ + + R +F +ID YAK G + SA +FE+
Sbjct: 225 AIISGYVKCGDLRSARKMFDEMPHRNVVSF-----TTMIDGYAKSGDMASARFVFEE--A 277
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
+++V+W+++I F + +KP+ +S+++ACS G +E
Sbjct: 278 PERDVVAWSALI---------------FRVCAEWNVKPDEFIMVSLMSACSQMGSLELA- 321
Query: 209 KFFDKMVEECEVLPDIKHY-GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC 267
K+ D V + + H LIDM + G +++A K+ +P +++ + +++
Sbjct: 322 KWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKR--DLISYCSMMQGL 379
Query: 268 SFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
S HG + ++L G D V IL R G
Sbjct: 380 SIHGCGPQAVSLFSRML--NEGLTPDDVAFTVILTACSRAG 418
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 112/253 (44%), Gaps = 15/253 (5%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
Y S+F + + V W I GY+ + ++LF RM + P + T ++
Sbjct: 73 FSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAV-PDKFTYPSLIK 131
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
A + V+ HG + G + V LID Y KCG I A K+F+++ +N
Sbjct: 132 ACSKVCGVKEGVAFHGSAVRCGVGG-DVFVMTSLIDLYGKCGEILCARKVFDEMG--ERN 188
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
+VSWT++I+G+A EA + F+ M + N V++ ++++ G + K FD
Sbjct: 189 VVSWTAMIAGYASFSDLVEARKLFDEMP----EKNAVSWNAIISGYVKCGDLRSARKMFD 244
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
+M ++ + +ID ++G + A V P +VV W L+ N
Sbjct: 245 EMPHR-----NVVSFTTMIDGYAKSGDMASARFVFEEAPER--DVVAWSALIFRVCAEWN 297
Query: 273 VEMGERVTRKILE 285
V+ E + ++
Sbjct: 298 VKPDEFIMVSLMS 310
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 84/183 (45%), Gaps = 16/183 (8%)
Query: 148 VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEG 207
V + V W + I G++ + V F RM++ P++ T+ S++ ACS V+EG
Sbjct: 83 VSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEG 142
Query: 208 LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL-GA 266
+ F V C V D+ LID+ G+ G + A KV + NVV W ++ G
Sbjct: 143 VAFHGSAV-RCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGER--NVVSWTAMIAGY 199
Query: 267 CSFHGNVEMGERVTRKIL-EMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE---RNA 322
SF VE RK+ EM + V I++G + GD R++ DE RN
Sbjct: 200 ASFSDLVE-----ARKLFDEMPE---KNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNV 251
Query: 323 LKF 325
+ F
Sbjct: 252 VSF 254
>gi|449454143|ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
gi|449490933|ref|XP_004158752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
Length = 484
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 124/328 (37%), Positives = 201/328 (61%), Gaps = 4/328 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D K+FDE+ R++V WN+MI G K G +++ LF +M R++VSW II +
Sbjct: 158 MEDAWKMFDEMSHRDVVVWNLMIRGFCKTGNVDFGLCLFRQMSERSLVSWNTIISCLAQN 217
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R AL LF++M + +P E+T++ + P + G + Q IH Y +G
Sbjct: 218 RRDVEALELFQQMEEHGF-KPDEVTVVTMLPVCSRLGALEVGQRIHSYASSKGNLVGITT 276
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LID Y KCG I A +F+ ++ K++VSW +II GFA++G G+ A++ F M+K
Sbjct: 277 VGNSLIDFYCKCGNIEKAYNIFQKMTC--KSVVSWNTIILGFALNGKGEFAIDLFMEMRK 334
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
LKPN TF++VL AC H GL+E+G + F M E+ E+ P ++H+GC++D+LGR G +E
Sbjct: 335 EYLKPNDATFVAVLTACVHSGLLEKGRELFSSMAEDYEIQPKLEHFGCMVDLLGRGGCVE 394
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A K+ +P + N +W +LGAC HGN+++ E ++++ +E G+YVL+ N+L
Sbjct: 395 EAHKLIKSMPMQ-PNATLWGAVLGACRTHGNLKLAEMAVKELISLEPWNSGNYVLLSNML 453
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRS 329
A R+ + E +R+ + E++ K PG+S
Sbjct: 454 AEEGRWEEVENVRQWMREKSVKKAPGQS 481
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 122/328 (37%), Positives = 192/328 (58%), Gaps = 4/328 (1%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ KLF E+P R+++ WN ++ G G +E LFEEMP RN+ SW +I GY
Sbjct: 314 EARKLFXEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGL 373
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
L F+RM++ P++ T++ V A + G + + +H Y E G +++V
Sbjct: 374 FFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKG-NVYVG 432
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N L+D YAKCG I +A+ +F ++ K+L+SW ++I G AMH G +A+ F +M+
Sbjct: 433 NALMDMYAKCGIIENAISVFR--GMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAG 490
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
KP+ +TF+ +L AC+H GLVE+G +F M ++ ++P I+HYGC++DML RAGRLEQA
Sbjct: 491 QKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQA 550
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
+P E + V+W LLGAC + NVE+ E ++++E+E +YV++ NI
Sbjct: 551 XAFVRKMPVE-ADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGD 609
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
R+ D RL+ + + K PG SL+
Sbjct: 610 AGRWEDVARLKVAMRDTGFKKLPGCSLI 637
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 108/251 (43%), Gaps = 19/251 (7%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
++T + YAR LF+++P N+ W + GY + + LF +M + P
Sbjct: 139 LVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMD-IRP 197
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
+ T V + + + + +H + K GF + V LID Y+ G + A K+
Sbjct: 198 NCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRG-NPFVGTTLIDMYSAGGTVGDAYKI 256
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL--SVLNACSH 200
F ++ +N+V+WTS+I+G+ + A F+ L P R L +++
Sbjct: 257 FCEMF--ERNVVAWTSMINGYILSADLVSARRLFD------LAPERDVVLWNIMVSGYIE 308
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
GG + E K F +M D+ + ++ G +E E + +P N+ W
Sbjct: 309 GGDMVEARKLFXEMPNR-----DVMFWNTVLKGYATNGNVEALEGLFEEMPER--NIFSW 361
Query: 261 RTLLGACSFHG 271
L+G + +G
Sbjct: 362 NALIGGYAHNG 372
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 96/226 (42%), Gaps = 16/226 (7%)
Query: 99 DVRNCQL---IHGYGEKRGFNAFHI--HVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 153
++R+C+ +H + N F +++ L+ A + A +LF+ I N+
Sbjct: 107 NMRSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIP--DPNI 164
Query: 154 VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDK 213
W S+ G+A +E V F +M+ + ++PN TF VL +C + EG +
Sbjct: 165 ALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCF 224
Query: 214 MVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
++ +C + LIDM G + A K+ + NVV W +++ ++
Sbjct: 225 LI-KCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFER--NVVAWTSMINGYILSADL 281
Query: 274 EMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319
R+ L ER D VL +++G GD R++ E
Sbjct: 282 VSARRLFD--LAPER----DVVLWNIMVSGYIEGGDMVEARKLFXE 321
>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 641
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 194/311 (62%), Gaps = 5/311 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FD + E+N+V+WN M+TG G+L A+ LF EMP RNV+SWT +I G + N+ +
Sbjct: 314 RVFDRMQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSD 373
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL LF+ M+ +P EIT+ +V A G + Q +H Y + + ++V N L
Sbjct: 374 ALKLFQEMMDAN-VKPDEITVSSVLSACSHLGLLDTGQTVHEYMCRHDIKS-DVYVGNAL 431
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y KCG + AL++F D+ ++K+ VSWTS+I G A++G E F +M + L+P
Sbjct: 432 IDMYCKCGVVDKALEVFHDM--KKKDSVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQP 489
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+F+ +L AC+H GLV++GL++F+ M + P++KHYGC++D+L R+G L++A +
Sbjct: 490 THGSFIGILLACTHAGLVDKGLEYFESMEHVYGLRPEMKHYGCVVDLLSRSGELDRAYEF 549
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P + +VV+WR LL AC H N+ + E T K+LE++ G+YVL+ N AG R
Sbjct: 550 IKQMPV-VPDVVLWRILLSACKLHRNLVLAEIATSKLLELDPSNSGNYVLLSNTYAGSDR 608
Query: 307 YGDAERLRRVV 317
+ DA R+R ++
Sbjct: 609 WDDASRMRDLM 619
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 137/275 (49%), Gaps = 36/275 (13%)
Query: 30 WGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILA 89
+GEL YA+ +F++M R++VSW +I GY++ NR L LF M T S +T++
Sbjct: 205 FGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADS-VTMVK 263
Query: 90 VFPA---IWQNGDVRNC-----------------QLIHGYGE-------KRGFNAFH--- 119
V A + ++G V + LI YG +R F+
Sbjct: 264 VILACSYLCEDGVVDSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQEKN 323
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
I N ++ YA G + +A KLF ++ + +N++SWT +ISG A +A++ F+ M
Sbjct: 324 IVSWNAMLTGYATAGDLVAAKKLFNEMPI--RNVISWTCMISGCAQANQCSDALKLFQEM 381
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+KP+ +T SVL+ACSH GL++ G + M ++ D+ LIDM + G
Sbjct: 382 MDANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCRH-DIKSDVYVGNALIDMYCKCGV 440
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
+++A +V + + + V W +++ + +G V+
Sbjct: 441 VDKALEVFHDMKKK--DSVSWTSMILGLAVNGFVD 473
>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 616
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 124/323 (38%), Positives = 195/323 (60%), Gaps = 3/323 (0%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FD +P R++V+WN MI G +K GE+E A+ +FE M ++VV+WT +I Y +
Sbjct: 165 RVFDRMPNRDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMK 224
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL LFR M++ P I++V AI G V + +H Y + + L
Sbjct: 225 ALDLFREMLSLG-LRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSAL 283
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y+KCG I +A +F IS R+N+ W S+ISG A+HG+ +EA++ F M+++ ++P
Sbjct: 284 IDMYSKCGYIENAYHVFRSIS-HRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEP 342
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N +TFL +L+ CSHGGLVEEG +F+ M E+ +++P I+HYGC+ID+ GRAGRLE A V
Sbjct: 343 NEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGV 402
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E +++ W+ +L A HG++E+G+ + +E+ YVL+ NI A R
Sbjct: 403 IQNMPFE-ADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGR 461
Query: 307 YGDAERLRRVVDERNALKFPGRS 329
+ D ++R ++ +R K G S
Sbjct: 462 WDDVAKIRLMMRQRGVKKIAGCS 484
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 143/321 (44%), Gaps = 46/321 (14%)
Query: 7 KLFDELPERNLVTWNVMITGLVKW-------GELEYARSLFEEMPCRNVVSWTGIIDGYT 59
++ ++ + NL+ ++ L+ + G L+YA S+F + N + +I G++
Sbjct: 24 QIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKGFS 83
Query: 60 RMNRSNGALALFRRMVAC-EYTEPSEITILAVFPAIWQNGDVRNCQLIHG---------- 108
+ +L L+ RM++C Y+ E +I +V A + + +HG
Sbjct: 84 DTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFD 143
Query: 109 -------------YGE----KRGFNAF---HIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
+GE +R F+ + N +I Y K G I A K+FE +S
Sbjct: 144 PFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELAKKVFETMS- 202
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
K++V+WTS+IS + + +A++ F M + L+P+ +SVL+A + G VEEG
Sbjct: 203 -DKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEG- 260
Query: 209 KFFDKMVEECEVLPDIKHYG-CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC 267
K+ V ++ G LIDM + G +E A V I S N+ W +++
Sbjct: 261 KWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSI-SHRRNIGDWNSMISGL 319
Query: 268 SFHGNVEMGERVTRKILEMER 288
+ HG + +EMER
Sbjct: 320 AIHG---LAREALDIFVEMER 337
>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 122/328 (37%), Positives = 192/328 (58%), Gaps = 4/328 (1%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ KLF E+P R+++ WN ++ G G +E LFEEMP RN+ SW +I GY
Sbjct: 93 EARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGL 152
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
L F+RM++ P++ T++ V A + G + + +H Y E G +++V
Sbjct: 153 FFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKG-NVYVG 211
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N L+D YAKCG I +A+ +F ++ K+L+SW ++I G AMH G +A+ F +M+
Sbjct: 212 NALMDMYAKCGIIENAISVFR--GMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAG 269
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
KP+ +TF+ +L AC+H GLVE+G +F M ++ ++P I+HYGC++DML RAGRLEQA
Sbjct: 270 QKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQA 329
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
+P E + V+W LLGAC + NVE+ E ++++E+E +YV++ NI
Sbjct: 330 MAFVRKMPVE-ADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGD 388
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
R+ D RL+ + + K PG SL+
Sbjct: 389 AGRWEDVARLKVAMRDTGFKKLPGCSLI 416
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 131/268 (48%), Gaps = 25/268 (9%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD++P+ N+ WN M G + + E R +F EM RNVV+WT +I+GY
Sbjct: 6 QLFDQIPDPNIALWNSMFRG---YAQSESYREIFCEMFERNVVAWTSMINGYILSADLVS 62
Query: 67 ALALFRRMVACEYTEPSEITIL--AVFPAIWQNGD-VRNCQLIHGYGEKRGFNAFHIHVS 123
A LF P +L + + GD V +L H + +
Sbjct: 63 ARRLFD-------LAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNR------DVMFW 109
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKV 182
N ++ YA G + + LFE++ +N+ SW ++I G+A +G+ E + +F+RM +
Sbjct: 110 NTVLKGYATNGNVEALEGLFEEMP--ERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSES 167
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
+ PN T ++VL+AC+ G ++ G K+ E + ++ L+DM + G +E
Sbjct: 168 DVPPNDATLVTVLSACARLGALDLG-KWVHVYAESSGLKGNVYVGNALMDMYAKCGIIEN 226
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFH 270
A V G+ ++ +++ W TL+G + H
Sbjct: 227 AISVFRGMDTK--DLISWNTLIGGLAMH 252
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 121/325 (37%), Positives = 194/325 (59%), Gaps = 4/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD++P +++++WN ++ G G++ LFEEMP RNV SW +I GYTR +
Sbjct: 169 ELFDKMPNKDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSE 228
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
L+ F+RM+ P++ T++ V A + G + + +H Y E G+ +++V N L
Sbjct: 229 VLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKG-NVYVRNAL 287
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+D YAKCG + +AL +F+ S++ K+L+SW +II G A+HG G +A+ F M+ P
Sbjct: 288 MDMYAKCGVVETALDVFK--SMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENP 345
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +TF+ +L AC+H GLVE+G +F M ++ ++P I+HYGC++D+LGRAG L A
Sbjct: 346 DGITFIGILCACTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDF 405
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E + V+W LLGAC + NVE+ E K++E E +YV++ NI R
Sbjct: 406 IRKMPIE-ADAVIWAALLGACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFGR 464
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ D RL+ + + K PG SL+
Sbjct: 465 WKDVARLKVAMRDTGFKKLPGCSLI 489
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 120/267 (44%), Gaps = 47/267 (17%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++F E+ ERN++ W MI G + +L AR LF+ P R++V W +I GY
Sbjct: 107 RVFGEMIERNVIAWTAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIR 166
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A LF +M N DV + N +
Sbjct: 167 ARELFDKM---------------------PNKDVMSW--------------------NTV 185
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ-KVVLK 185
++ YA G + + +LFE++ +N+ SW ++I G+ +G E + F+RM +
Sbjct: 186 LNGYASNGDVMACERLFEEMP--ERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVV 243
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN T ++VL+AC+ G ++ G K+ E ++ L+DM + G +E A
Sbjct: 244 PNDATLVNVLSACARLGALDLG-KWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALD 302
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGN 272
V + ++ +++ W T++G + HG+
Sbjct: 303 VFKSMDNK--DLISWNTIIGGLAVHGH 327
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 112/241 (46%), Gaps = 19/241 (7%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
+E A +F+++P N W + GY++ + LFR+M + P+ T +
Sbjct: 1 MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLD-VMPNCFTFPVILK 59
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
+ + ++ + +H + K GF A + V+ LID YA G I +A ++F ++ +ER N
Sbjct: 60 SCVKINALKEGEEVHCFVIKSGFRA-NPFVATTLIDMYASGGAIHAAYRVFGEM-IER-N 116
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR--VTFLSVLNACSHGGLVEEGLKF 210
+++WT++I+G+ A F+ L P R V + ++++ V +
Sbjct: 117 VIAWTAMINGYITCCDLVTARRLFD------LAPERDIVLWNTMISGYIEAKDVIRAREL 170
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
FDKM + D+ + +++ G + E++ +P NV W L+G + +
Sbjct: 171 FDKMPNK-----DVMSWNTVLNGYASNGDVMACERLFEEMPER--NVFSWNALIGGYTRN 223
Query: 271 G 271
G
Sbjct: 224 G 224
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 88/198 (44%), Gaps = 24/198 (12%)
Query: 138 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197
+A K+F+ I N W ++ G++ + K+ + F +M+ + + PN TF +L +
Sbjct: 3 NAHKVFDQIP--EPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60
Query: 198 CSHGGLVEEGLKFFDKMVEE-CEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256
C ++EG + +++ P + LIDM G + A +V + N
Sbjct: 61 CVKINALKEGEEVHCFVIKSGFRANPFVA--TTLIDMYASGGAIHAAYRVFGEMIER--N 116
Query: 257 VVVWRTLLGACSFHGNVEMGERVT-RKILEM--ERGYGGDYVLMYNILAGVWRYGDAERL 313
V+ W ++ +G + + VT R++ ++ ER D VL +++G D R
Sbjct: 117 VIAWTAMI-----NGYITCCDLVTARRLFDLAPER----DIVLWNTMISGYIEAKDVIRA 167
Query: 314 RRVVDERNALKFPGRSLV 331
R + D K P + ++
Sbjct: 168 RELFD-----KMPNKDVM 180
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 243 bits (620), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 124/330 (37%), Positives = 201/330 (60%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + LF+ +PERN +WN +I G V+ G+L+ AR LF +MP +NVVSWT +I+G+++
Sbjct: 224 LSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQN 283
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL++F RM+ E P+++T+++ A + G ++ + IH Y GF +
Sbjct: 284 GDHEKALSMFWRMLE-EGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQ-LNRG 341
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ L+D YAKCG I SA ++F + + K+L++W+ +I G+A+HG +A++ F +M+
Sbjct: 342 IGTALVDMYAKCGNIKSASRVF--VETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKS 399
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ P+ V FL++L ACSH G V++GL FF+ M + + P +KHY ++D+LGRAGRL+
Sbjct: 400 AGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLD 459
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A +P + V+W L AC H N+EM E K+L++E + G YV + N+
Sbjct: 460 EALSFIQSMPIN-PDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVY 518
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A V R+ D ER+R ++ R K PG S +
Sbjct: 519 AAVGRWEDVERVRTLMKNRGVEKDPGWSYI 548
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 129/288 (44%), Gaps = 27/288 (9%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
+I+ L+YA S+F N+ + +I G +R G+++ F M+ P
Sbjct: 78 LISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLS-IRP 136
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
+T+ V ++ DV + +HG K G F V L+D Y K G + L+L
Sbjct: 137 DRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLE-FDSFVRVSLVDMYVKIGELGFGLQL 195
Query: 143 FEDISVERK--NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
F++ K +++ W +I+G G +A FE M + N ++ S++N
Sbjct: 196 FDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMP----ERNAGSWNSLINGFVR 251
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA-----EKVASGI-PSEI 254
G ++ + F +M E+ ++ + +I+ + G E+A + G+ P+++
Sbjct: 252 NGDLDRARELFVQMPEK-----NVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDL 306
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKI----LEMERGYGGDYVLMY 298
T V + L AC+ G +++GER+ + ++ RG G V MY
Sbjct: 307 TVV----SALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMY 350
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 87/204 (42%), Gaps = 33/204 (16%)
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
LI + + AL +F + NL + ++I G A + + +V +F M ++ ++
Sbjct: 78 LISSSCSLKSLDYALSIFR--CFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIR 135
Query: 186 PNRVTFLSVLNA-----------CSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDML 234
P+R+T VL + C HGG+++ GL+ FD V L+DM
Sbjct: 136 PDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLE-FDSFVRV-----------SLVDMY 183
Query: 235 GRAGRLEQAEKVASGIP--SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG 292
+ G L ++ P ++ ++++W L+ C G++ + + E G
Sbjct: 184 VKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWN 243
Query: 293 DYVLMYNILAGVWRYGDAERLRRV 316
+++ G R GD +R R +
Sbjct: 244 ------SLINGFVRNGDLDRAREL 261
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 243 bits (620), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 124/316 (39%), Positives = 198/316 (62%), Gaps = 5/316 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
N+V WN+MI G V+ G+++ A++LF+EMP R+VVSW +I GY + A+ LF+ M
Sbjct: 203 NVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQ 262
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
+ +P+ +T+++V PAI + G + + IH Y K + + + L+D Y+KCG
Sbjct: 263 SSN-IDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDV-LGSALVDMYSKCGS 320
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
I AL++FE ++ ++N ++W++II FAMHG ++A+ +F M K + PN V ++ +L
Sbjct: 321 IDEALQVFE--TLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGIL 378
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+ACSH GLVEEG FF MV+ + P I+HYGC++D+LGRAG LE+AE++ +P E
Sbjct: 379 SACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPD 438
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
+ V+W+ LLGAC H N++MGERV ++E+ G YV + N+ A + + R+R
Sbjct: 439 D-VIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRL 497
Query: 316 VVDERNALKFPGRSLV 331
+ + K PG S +
Sbjct: 498 KMKGMDIRKDPGCSWI 513
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 136/287 (47%), Gaps = 27/287 (9%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARS----LFEEMPCR-----NVVSWTGIIDGY 58
+F ++PE N WN ++ L + + E+ +S LF M C N ++ ++
Sbjct: 74 VFRQMPEPNCFCWNTILRVLAETND-EHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKAC 132
Query: 59 TRMNRSNGALALFRRMVACEYTEP----SEITILAVFPAIWQNGDVRNCQLIHGYG---- 110
R +R + +V + E S + + V A+ ++ C+ + +
Sbjct: 133 ARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQ 192
Query: 111 ---EKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 167
+KR + ++ + N +ID + G I SA LF+++ ++++VSW +ISG+A +G
Sbjct: 193 MELDKRKQDG-NVVLWNIMIDGQVRLGDIKSAKNLFDEMP--QRSVVSWNVMISGYAQNG 249
Query: 168 MGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY 227
EA+ F+ MQ + PN VT +SVL A + G +E G K+ + ++ D
Sbjct: 250 HFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELG-KWIHLYAGKNKIEIDDVLG 308
Query: 228 GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
L+DM + G +++A +V +P N + W ++GA + HG E
Sbjct: 309 SALVDMYSKCGSIDEALQVFETLPKR--NAITWSAIIGAFAMHGRAE 353
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 243 bits (620), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 128/317 (40%), Positives = 197/317 (62%), Gaps = 7/317 (2%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
RNL+T +I K GEL AR LF+ M R+VV+W+ +I GYT+ ++ ALALF M
Sbjct: 255 RNLMT--ALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEM 312
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
E EP+++T+++V A G + + +H Y ++ + I + L+D YAKCG
Sbjct: 313 QLAE-VEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLS-LTIILGTALVDFYAKCG 370
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
CI A++ FE + V KN +WT++I G A +G G+EA+E F M+K ++P VTF+ V
Sbjct: 371 CIDDAVEAFESMPV--KNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGV 428
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L ACSH LVEEG + FD M ++ + P +HYGC++D+LGRAG +++A + +P E
Sbjct: 429 LMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIE- 487
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLR 314
N V+WR LL +C+ H NVE+GE ++I+ + + GDY+L+ NI A V ++ +A +R
Sbjct: 488 PNAVIWRALLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIR 547
Query: 315 RVVDERNALKFPGRSLV 331
+ + +R K PG SL+
Sbjct: 548 KEMKDRGIEKTPGCSLI 564
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 121/240 (50%), Gaps = 7/240 (2%)
Query: 32 ELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVF 91
++ A+ LF+ + VV W II Y + + +F+ M+ EIT+++V
Sbjct: 169 DVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAF-DEITLVSVV 227
Query: 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151
A + GD + + + Y +++G + ++ LID YAKCG + A +LF+ ++ +
Sbjct: 228 TACGRIGDAKLGKWVAEYVDEKGL-VRNRNLMTALIDMYAKCGELGKARRLFD--GMQSR 284
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
++V+W+++ISG+ +EA+ F MQ ++PN VT +SVL+AC+ G +E G K+
Sbjct: 285 DVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETG-KWV 343
Query: 212 DKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ + I L+D + G ++ A + +P + N W L+ + +G
Sbjct: 344 HSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMP--VKNSWTWTALIKGMATNG 401
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 124/316 (39%), Positives = 198/316 (62%), Gaps = 5/316 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
N+V WN+MI G V+ G+++ A++LF+EMP R+VVSW +I GY + A+ LF+ M
Sbjct: 203 NVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQ 262
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
+ +P+ +T+++V PAI + G + + IH Y K + + + L+D Y+KCG
Sbjct: 263 SSN-IDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDV-LGSALVDMYSKCGS 320
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
I AL++FE ++ ++N ++W++II FAMHG ++A+ +F M K + PN V ++ +L
Sbjct: 321 IDKALQVFE--TLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGIL 378
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+ACSH GLVEEG FF MV+ + P I+HYGC++D+LGRAG LE+AE++ +P E
Sbjct: 379 SACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPD 438
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
+ V+W+ LLGAC H N++MGERV ++E+ G YV + N+ A + + R+R
Sbjct: 439 D-VIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRL 497
Query: 316 VVDERNALKFPGRSLV 331
+ + K PG S +
Sbjct: 498 KMKGMDIRKDPGCSWI 513
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 135/287 (47%), Gaps = 27/287 (9%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARS----LFEEMPCR-----NVVSWTGIIDGY 58
+F ++PE N WN ++ L + + E+ +S LF M C N ++ ++
Sbjct: 74 VFRQMPEPNCFCWNTILRILAETND-EHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKAC 132
Query: 59 TRMNRSNGALALFRRMVACEYTEP----SEITILAVFPAIWQNGDVRNCQLIHGYG---- 110
R +R + +V + E S + + V A+ ++ C+ + +
Sbjct: 133 ARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQ 192
Query: 111 ---EKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 167
+KR + ++ + N +ID + G I SA LF+++ +++VSW +ISG+A +G
Sbjct: 193 MELDKRKQDG-NVVLWNIMIDGQVRLGDIKSAKNLFDEMP--PRSVVSWNVMISGYAQNG 249
Query: 168 MGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY 227
EA+ F+ MQ + PN VT +SVL A + G +E G K+ + +V D
Sbjct: 250 HFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELG-KWIHLYAGKNKVEIDDVLG 308
Query: 228 GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
L+DM + G +++A +V +P N + W ++GA + HG E
Sbjct: 309 SALVDMYSKCGSIDKALQVFETLPKR--NAITWSAIIGAFAMHGRAE 353
>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570 [Vitis vinifera]
Length = 561
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 123/330 (37%), Positives = 192/330 (58%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ K+FDE+P RN+V++ MI G K G++ AR +FEE P R+VV+W+ +I GY +
Sbjct: 236 LRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQN 295
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ N A+ +F M + +P E ++++ A Q G + + + Y K + H
Sbjct: 296 GQPNEAVKIFLEMCS-RNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAH 354
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V LID AKCG + A KLFE++ +++L+S+ S++ G ++HG G +AV F RM
Sbjct: 355 VIAALIDMNAKCGSMDRATKLFEEM--PKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLN 412
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
L P+ V F +L ACS GLV+EG +F+ M + ++P HY C++D+LGRAGRL+
Sbjct: 413 EGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLK 472
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++ +P E + W LLGAC H ++E+GE V ++ E+E G+YVL+ NI
Sbjct: 473 EAYELLKSMPVE-PHAGAWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIY 531
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ D LR + ER K PG S +
Sbjct: 532 AAAEQWLDVSLLRNKMRERGIRKIPGCSWI 561
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 140/303 (46%), Gaps = 49/303 (16%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FDE+ ERN+V+W MI G + +L AR LF+EMP +N VSW II GY
Sbjct: 179 KVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGY-------- 230
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
V C GD+R+ + + R +F +
Sbjct: 231 --------VKC--------------------GDLRSARKMFDEMPHRNVVSF-----TTM 257
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YAK G + SA +FE+ +++V+W+++ISG+ +G EAV+ F M +KP
Sbjct: 258 IDGYAKSGDMASARFVFEE--APERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKP 315
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY-GCLIDMLGRAGRLEQAEK 245
+ +S+++ACS G +E K+ D V + + H LIDM + G +++A K
Sbjct: 316 DEFIMVSLMSACSQMGSLELA-KWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATK 374
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
+ +P +++ + +++ S HG + ++L G D V IL
Sbjct: 375 LFEEMPKR--DLISYCSMMQGLSIHGCGPQAVSLFSRML--NEGLTPDDVAFTVILTACS 430
Query: 306 RYG 308
R G
Sbjct: 431 RAG 433
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 128/289 (44%), Gaps = 23/289 (7%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
Y S+F + + V W I GY+ + ++LF RM + P + T ++
Sbjct: 73 FSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAV-PDKFTYPSLIK 131
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
A + V+ HG + G + V LID Y KCG I A K+F+++ +N
Sbjct: 132 ACSKVCGVKEGVAFHGSAVRCGVGG-DVFVMTSLIDLYGKCGEILCARKVFDEMG--ERN 188
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
+VSWT++I+G+A EA + F+ M + N V++ ++++ G + K FD
Sbjct: 189 VVSWTAMIAGYASFSDLVEARKLFDEMP----EKNAVSWNAIISGYVKCGDLRSARKMFD 244
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
+M ++ + +ID ++G + A V P +VV W L+ G
Sbjct: 245 EMPHR-----NVVSFTTMIDGYAKSGDMASARFVFEEAPER--DVVAWSALIS-----GY 292
Query: 273 VEMGE--RVTRKILEM-ERGYGGDYVLMYNILAGVWRYGDAERLRRVVD 318
V+ G+ + LEM R D +M ++++ + G E + V D
Sbjct: 293 VQNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSACSQMGSLELAKWVDD 341
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 84/183 (45%), Gaps = 16/183 (8%)
Query: 148 VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEG 207
V + V W + I G++ + V F RM++ P++ T+ S++ ACS V+EG
Sbjct: 83 VSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEG 142
Query: 208 LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL-GA 266
+ F V C V D+ LID+ G+ G + A KV + NVV W ++ G
Sbjct: 143 VAFHGSAV-RCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGER--NVVSWTAMIAGY 199
Query: 267 CSFHGNVEMGERVTRKIL-EMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE---RNA 322
SF VE RK+ EM + V I++G + GD R++ DE RN
Sbjct: 200 ASFSDLVE-----ARKLFDEMPE---KNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNV 251
Query: 323 LKF 325
+ F
Sbjct: 252 VSF 254
>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 119/325 (36%), Positives = 205/325 (63%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
KLFDE +L++WN MI+G +K ++ A+++F+ MP ++VVSW+ +I GY + + +
Sbjct: 432 KLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDE 491
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
LALF+ M + +P E T+++V A + + + +H Y ++ G ++ + L
Sbjct: 492 TLALFQEMQMSGF-KPDETTLVSVISACARLAALEQGKWVHAYIKRNGLT-INVILGTTL 549
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y KCGC+ +AL++F + K + +W ++I G AM+G+ + +++ F M+K + P
Sbjct: 550 IDMYMKCGCVETALEVF--YGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTP 607
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N +TF+ VL AC H GLV+EG F M+ + ++ P++KHYGC++D+LGRAG+L++AE++
Sbjct: 608 NEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEEL 667
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ +P +V W LLGAC HG+ EMG RV RK++E++ + G +VL+ NI A +
Sbjct: 668 LNRMPMT-PDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGK 726
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ D +R ++ + LK PG S++
Sbjct: 727 WDDVLEIRGMMTKHRVLKIPGCSMI 751
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 141/302 (46%), Gaps = 34/302 (11%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+++ ++ ++PER+++ N MI G + A LF+EM +++V+W+ +I + +
Sbjct: 295 VEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQN 354
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
A+ F M E+ ++ A V +LIH K G ++ I+
Sbjct: 355 EMYEEAIRTFVGMHKIGVMV-DEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESY-IN 412
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDI-----------------------------SVERKN 152
+ N LI Y+KCG I A KLF++ S+ K+
Sbjct: 413 LQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKD 472
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
+VSW+S+ISG+A + + E + F+ MQ KP+ T +SV++AC+ +E+G K+
Sbjct: 473 VVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQG-KWVH 531
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
++ + ++ LIDM + G +E A +V G+ + + W L+ + +G
Sbjct: 532 AYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEK--GISTWNALILGLAMNGL 589
Query: 273 VE 274
VE
Sbjct: 590 VE 591
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 124/330 (37%), Positives = 197/330 (59%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ LF ++P +N+ +WNVMI GL K G L AR LF+EM R+ +SW+ ++DGY
Sbjct: 213 LEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISA 272
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R AL +F++M E T P + +V A G + + +H Y KR
Sbjct: 273 GRYKEALEIFQQMQR-EETRPGRFILSSVLAACSNIGAIDQGRWVHAY-LKRNSIKLDAV 330
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ L+D YAKCG + ++FE++ + + + +W ++I G A+HG ++A+E F ++Q+
Sbjct: 331 LGTALLDMYAKCGRLDMGWEVFEEM--KEREIFTWNAMIGGLAIHGRAEDALELFSKLQE 388
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPN +T + VL AC+H G V++GL+ F M E V P+++HYGC++D+LGR+G
Sbjct: 389 GRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFS 448
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AE + + +P + N VW LLGAC HGN ++ ERV + +LE+E G YVL+ NI
Sbjct: 449 EAEDLINSMPMK-PNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIY 507
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A V R+ D ++R+++ +R PG S+V
Sbjct: 508 AKVGRFDDVSKIRKLMKDRGIKTVPGVSIV 537
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/331 (21%), Positives = 129/331 (38%), Gaps = 82/331 (24%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+F +P N+ WN++I G ++ +L A + M +ID R N
Sbjct: 88 KVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRM----------VIDA-----RPN- 131
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS--- 123
++T P+ +V A+ + + + HG G + IH+
Sbjct: 132 -----------KFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASF 180
Query: 124 --------------------NCLIDTYAKCGCIFSALKLFEDISVE-------------- 149
N +ID Y KCG + +A LF + V+
Sbjct: 181 GRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAK 240
Query: 150 ---------------RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
++ +SW+S++ G+ G KEA+E F++MQ+ +P R SV
Sbjct: 241 GGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSV 300
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L ACS+ G +++G ++ ++ + D L+DM + GRL+ +V +
Sbjct: 301 LAACSNIGAIDQG-RWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKER- 358
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
+ W ++G + HG E + K+ E
Sbjct: 359 -EIFTWNAMIGGLAIHGRAEDALELFSKLQE 388
>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
Length = 604
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 198/317 (62%), Gaps = 5/317 (1%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
N+ +I + ++ AR +F+EM +VS+ II GY R ++ N AL+LFR +
Sbjct: 163 HNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFREL 222
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
A EP+++T+L+V + G + + IH Y +K+GF+ + + V+ LID +AKCG
Sbjct: 223 QASN-IEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKY-VKVNTALIDMFAKCG 280
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
+ A+ +FE + V ++ +W+++I FA HG G +A+ FE M++ ++P+ +TFL +
Sbjct: 281 SLTDAISIFEGMRV--RDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGL 338
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L ACSH GLVE+G +F M + + P IKHYGC++D+LGRAG L++A + +
Sbjct: 339 LYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKA 398
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLR 314
T ++WRTLL ACS HGNVEM +RV +I E++ +GGDYV++ N+ A V R+ D LR
Sbjct: 399 TP-ILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLYARVGRWEDVNHLR 457
Query: 315 RVVDERNALKFPGRSLV 331
+++ +R +K PG S V
Sbjct: 458 KLMKDRGVVKVPGCSSV 474
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 142/300 (47%), Gaps = 31/300 (10%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
+++A LF+++ ++++ + + GY R N A +LF ++ C P + T ++
Sbjct: 80 MDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELL-CSGLLPDDYTFSSLLK 138
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
A + +R +H + K G N +I++ LI+ YA+C + +A +F+++ E+
Sbjct: 139 ACASSKALREGMGLHCFAVKLGLN-HNIYICPTLINMYAECNDMNAARGVFDEM--EQPC 195
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
+VS+ +II+G+A EA+ F +Q ++P VT LSV+ +C+ G ++ G K+
Sbjct: 196 IVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLG-KWIH 254
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
+ V++ +K LIDM + G L A + G+ + + W ++ A + HG+
Sbjct: 255 EYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGM--RVRDTQAWSAMIVAFATHGD 312
Query: 273 ----VEMGERVTRK--------------------ILEMERGYGGDYVLMYNILAGVWRYG 308
+ M E + R+ ++E RGY Y I G+ YG
Sbjct: 313 GLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYG 372
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 132/329 (40%), Positives = 200/329 (60%), Gaps = 13/329 (3%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FD + R++V+W +++GL + G+++ AR LF+ MP R+ VSWT +IDGY R
Sbjct: 179 KVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFRE 238
Query: 67 ALALFRRMVACEYTEPS--EITILAVFPAIWQNGDVRNCQLIHGYGEKRG--FNAFHIHV 122
AL +FR M +Y+ S E T+++V A Q G + + + Y ++G +AF V
Sbjct: 239 ALEMFREM---QYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAF---V 292
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
N LID Y+KCG I AL +F+ + ++ +WT+II G A++G +EA+E F RM +V
Sbjct: 293 GNALIDMYSKCGSIERALDVFK--GMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRV 350
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
P+ VTF+ VL AC+H GLV++G +FF M+E + P++ HYGC+ID+LGRAG++ +
Sbjct: 351 SETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITE 410
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302
A +P N +W TLL AC HGN E+GE V ++LE++ Y+L+ NI A
Sbjct: 411 ALDTIDQMPM-TPNSTIWGTLLAACRVHGNSEIGELVAERLLELDPENSMVYILLSNIYA 469
Query: 303 GVWRYGDAERLRRVVDERNALKFPGRSLV 331
R+ D RLR + E+ K PG SL+
Sbjct: 470 KCNRWEDVRRLRHAIMEKGIKKEPGCSLI 498
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 106/237 (44%), Gaps = 22/237 (9%)
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQ----NGDVRNCQLIHGYGEKRGFNAFHIHV 122
A+A + RM+A P T A+ A+ + +G + +H + + G + HV
Sbjct: 3 AVAGYARMLA-RGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGR-NAHV 60
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
++ L+ Y G +A L + V+W ++ISG G E+ +F M +
Sbjct: 61 ASSLVAAYTAGGDGAAARALVGECDTP----VAWNALISGHNRGGRFGESCGSFVDMARA 116
Query: 183 VLKPNRVTFLSVLNACSHGGL-VEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
P VT++SVL+AC G V G++ ++V VLPD++ L+DM +
Sbjct: 117 GAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGS-GVLPDLRVENALVDMYAECADMG 175
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVE--------MGERVTRKILEMERGY 290
A KV G+ ++ +VV W +LL + G V+ M ER T M GY
Sbjct: 176 SAWKVFDGM--QVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGY 230
>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 127/330 (38%), Positives = 192/330 (58%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L K+FDE+ ERN+V++ VMI G K G++ AR+LF+E P ++VV+W+ +I GY+R
Sbjct: 218 LSGARKVFDEMVERNVVSFTVMIDGYAKVGDMASARALFDEAPEKDVVAWSALISGYSRN 277
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ N A+ +F MV+ +P E ++++ A Q G+ + + Y + + H
Sbjct: 278 EQPNEAVKIFFEMVSMN-VKPDEFIMVSLMSACSQLGNSDLAKWVDSYLSQTSIDTRQAH 336
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V LID +AKCG + A+KLF+D+ ++L+ S+I G ++HG G EAVE F RM
Sbjct: 337 VLAALIDMHAKCGNMEKAVKLFQDM--PSRDLIPCCSLIQGLSIHGRGVEAVELFNRMLD 394
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
L P+ V F +L ACS GGL+E+G FFD M + V+P HY C++D+L RAG+L
Sbjct: 395 EGLIPDTVAFTVILTACSRGGLIEDGWHFFDTMKNKYSVVPSPNHYACMVDLLSRAGQLR 454
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A + +P + + W LLGAC HG+VE+ E V ++LE+E G YVL+ NI
Sbjct: 455 AAYDLLKSMPLK-PHACAWGALLGACKLHGDVELREEVANRLLELEPEKAGSYVLLSNIY 513
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ D +R + ER K PG S +
Sbjct: 514 ASANQWLDVSIVRDEMKERGIRKIPGCSYI 543
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 143/304 (47%), Gaps = 51/304 (16%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FDE+PERN+V+W M+ G G+LE A+ +FE MP RN+ SW +I G + +G
Sbjct: 161 KVFDEIPERNVVSWTAMVAGYASVGDLENAKRVFERMPERNLPSWNAMISGLGKAGDLSG 220
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A +F MV +R +F + +
Sbjct: 221 ARKVFDEMV------------------------------------ERNVVSFTV-----M 239
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YAK G + SA LF++ K++V+W+++ISG++ + EAV+ F M + +KP
Sbjct: 240 IDGYAKVGDMASARALFDE--APEKDVVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKP 297
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH-YGCLIDMLGRAGRLEQAEK 245
+ +S+++ACS G + K+ D + + + H LIDM + G +E+A K
Sbjct: 298 DEFIMVSLMSACSQLGNSDLA-KWVDSYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVK 356
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGN-VEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+ +PS +++ +L+ S HG VE E R ++ G D V IL
Sbjct: 357 LFQDMPSR--DLIPCCSLIQGLSIHGRGVEAVELFNRM---LDEGLIPDTVAFTVILTAC 411
Query: 305 WRYG 308
R G
Sbjct: 412 SRGG 415
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 131/279 (46%), Gaps = 16/279 (5%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
+ Y+ S+F + + + ++ +++ ++ +LF RM EY + T +
Sbjct: 54 VSYSTSIFNRLLNPSTFLYNILLKIFSKNSQFIDTFSLFYRMKQSEYALSDKYTYPLLIK 113
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
++ +++HG + G + ++V + LI Y KC I SA K+F++I +N
Sbjct: 114 VCSNELRLKEGEIVHGSAIRCGVSD-DVYVGSSLISFYGKCKEILSARKVFDEI--PERN 170
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
+VSWT++++G+A G + A FERM + N ++ ++++ G + K FD
Sbjct: 171 VVSWTAMVAGYASVGDLENAKRVFERMP----ERNLPSWNAMISGLGKAGDLSGARKVFD 226
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
+MVE ++ + +ID + G + A + P + +VV W L+ S +
Sbjct: 227 EMVER-----NVVSFTVMIDGYAKVGDMASARALFDEAPEK--DVVAWSALISGYSRNEQ 279
Query: 273 VEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
++ +++ M D +M ++++ + G+++
Sbjct: 280 PNEAVKIFFEMVSM--NVKPDEFIMVSLMSACSQLGNSD 316
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 126/330 (38%), Positives = 199/330 (60%), Gaps = 5/330 (1%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
FL K+FDE+ ER++V+W +I K+G++E A LF+++P +++V+WT ++ GY +
Sbjct: 193 FLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQ 252
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN-AFH 119
R AL F++M E E+T+ V A Q G V++ I E+ GF + +
Sbjct: 253 NGRPKEALEYFQKMQDVG-METDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGN 311
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+ V + LID Y+KCG A K+FE ++ +N+ S++S+I G+AMHG A++ F M
Sbjct: 312 VVVGSALIDMYSKCGSPDEAYKVFE--VMKERNVFSYSSMILGYAMHGRAHSALQLFHDM 369
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
K ++PN+VTF+ +L+ACSH GLVE+G + F KM + V P HY C++D+LGRAG
Sbjct: 370 LKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGC 429
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
LE+A + +P E N VW LLGAC HGN ++ + ++ ++E G+Y+L+ N
Sbjct: 430 LEEALDLVKTMPME-PNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSN 488
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRS 329
I A R+ + +LR+V+ E+ K PG S
Sbjct: 489 IYASAGRWEEVSKLRKVIREKGFKKNPGCS 518
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 34 EYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPA 93
Y +F ++ N WT +I GY + + + RM + P T A+F A
Sbjct: 93 SYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRR-DGVGPVSFTFSALFKA 151
Query: 94 IWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS------ 147
++ + +H G A ++V N +ID Y KCG + A K+F+++S
Sbjct: 152 CGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVS 211
Query: 148 -----------------------VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
+ K++V+WT++++G+A +G KEA+E F++MQ V +
Sbjct: 212 WTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGM 271
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP--DIKHYGCLIDMLGRAGRLEQ 242
+ + VT V++AC+ G V+ + + E P ++ LIDM + G ++
Sbjct: 272 ETDEVTLAGVISACAQLGAVKHA-NWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDE 330
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME 287
A KV + NV + +++ + HG ++ +L+ E
Sbjct: 331 AYKVFEVMKER--NVFSYSSMILGYAMHGRAHSALQLFHDMLKTE 373
>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 119/325 (36%), Positives = 205/325 (63%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
KLFDE +L++WN MI+G +K ++ A+++F+ MP ++VVSW+ +I GY + + +
Sbjct: 297 KLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDE 356
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
LALF+ M + +P E T+++V A + + + +H Y ++ G ++ + L
Sbjct: 357 TLALFQEMQMSGF-KPDETTLVSVISACARLAALEQGKWVHAYIKRNGL-TINVILGTTL 414
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y KCGC+ +AL++F + K + +W ++I G AM+G+ + +++ F M+K + P
Sbjct: 415 IDMYMKCGCVETALEVF--YGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTP 472
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N +TF+ VL AC H GLV+EG F M+ + ++ P++KHYGC++D+LGRAG+L++AE++
Sbjct: 473 NEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEEL 532
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ +P +V W LLGAC HG+ EMG RV RK++E++ + G +VL+ NI A +
Sbjct: 533 LNRMPMT-PDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGK 591
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ D +R ++ + LK PG S++
Sbjct: 592 WDDVLEIRGMMTKHRVLKIPGCSMI 616
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 141/302 (46%), Gaps = 34/302 (11%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+++ ++ ++PER+++ N MI G + A LF+EM +++V+W+ +I + +
Sbjct: 160 VEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQN 219
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
A+ F M E+ ++ A V +LIH K G ++ I+
Sbjct: 220 EMYEEAIRTFVGMHKIG-VMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESY-IN 277
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDI-----------------------------SVERKN 152
+ N LI Y+KCG I A KLF++ S+ K+
Sbjct: 278 LQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKD 337
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
+VSW+S+ISG+A + + E + F+ MQ KP+ T +SV++AC+ +E+G K+
Sbjct: 338 VVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQG-KWVH 396
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
++ + ++ LIDM + G +E A +V G+ + + W L+ + +G
Sbjct: 397 AYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEK--GISTWNALILGLAMNGL 454
Query: 273 VE 274
VE
Sbjct: 455 VE 456
>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 128/341 (37%), Positives = 196/341 (57%), Gaps = 28/341 (8%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++ +LFD++P RN +WN M+TG + G ++ A+ LF+EMP R+ +SW +I GY +
Sbjct: 324 IEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQS 383
Query: 62 NRSNGALALFRRM-----------VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYG 110
+S AL LF +M +AC + +EI L + + +HG
Sbjct: 384 GQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALEL------------GKQLHGRL 431
Query: 111 EKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 170
K GF +I N L+ Y KCG I A +FEDI+ K++VSW ++I+G+A HG GK
Sbjct: 432 VKAGFQTGYI-AGNALLAMYGKCGSIEEAFDVFEDIT--EKDIVSWNTMIAGYARHGFGK 488
Query: 171 EAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCL 230
EA+ FE M K+ +KP+ VT + VL+ACSH GLV++G+++F+ M + + + KHY C+
Sbjct: 489 EALALFESM-KMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCM 547
Query: 231 IDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 290
ID+LGRAGRL++A + +P + W LLGA HG+ E+GE+ K+ EME
Sbjct: 548 IDLLGRAGRLDEALNLMKSMPF-YPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDN 606
Query: 291 GGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
G YVL+ N+ A R+ + +R + ++ K PG S V
Sbjct: 607 SGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWV 647
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 138/270 (51%), Gaps = 15/270 (5%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D LFD +P R+ ++WN+MITG + G L AR LFEE+P R+V +WT ++ G+ +
Sbjct: 231 LDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQN 290
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ A +F M E +E++ A+ Q+ + + + R +++
Sbjct: 291 GMLDEATRIFEEM-----PEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSW--- 342
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
N ++ YA+CG I A LF+++ +++ +SW ++ISG+A G +EA+ F +M++
Sbjct: 343 --NTMVTGYAQCGNIDQAKILFDEMP--QRDCISWAAMISGYAQSGQSEEALHLFIKMKR 398
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
NR L++C+ +E G + ++V+ I L+ M G+ G +E
Sbjct: 399 DGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAG-NALLAMYGKCGSIE 457
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+A V I + ++V W T++ + HG
Sbjct: 458 EAFDVFEDITEK--DIVSWNTMIAGYARHG 485
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 145/276 (52%), Gaps = 33/276 (11%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+F+++P+R+L++WNVM++G VK G L AR+LF +MP ++VVSW ++ G+ +
Sbjct: 112 KVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEE 171
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA---FHIHVS 123
A +F +M+ +EI+ + A QNG + + +R F++ + I
Sbjct: 172 ARKIFDQMLV-----KNEISWNGLLSAYVQNGRIEDA--------RRLFDSKMDWEIVSW 218
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
NCL+ Y + + A LF+ + V K +SW +I+G+A +G+ EA FE +
Sbjct: 219 NCLMGGYVRKKRLDDARSLFDRMPVRDK--ISWNIMITGYAQNGLLSEARRLFEEL---- 272
Query: 184 LKPNRVTF--LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
P R F ++++ G+++E + F++M E+ EV + +I ++ ++E
Sbjct: 273 --PIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEV-----SWNAMIAGYVQSQQIE 325
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGE 277
+A ++ +PS N W T++ + GN++ +
Sbjct: 326 KARELFDQMPSR--NTSSWNTMVTGYAQCGNIDQAK 359
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 123/274 (44%), Gaps = 54/274 (19%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
F+++ K+FD++ +N ++WN +++ V+ G +E AR LF+ +VSW ++ GY R
Sbjct: 168 FVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVR 227
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
R + A +LF RM P I W
Sbjct: 228 KKRLDDARSLFDRM-------PVRDKI------SW------------------------- 249
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
N +I YA+ G + A +LFE++ + +++ +WT+++SGF +GM EA FE M
Sbjct: 250 ---NIMITGYAQNGLLSEARRLFEELPI--RDVFAWTAMVSGFVQNGMLDEATRIFEEMP 304
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ N V++ +++ +E+ + FD+M + + ++ + G +
Sbjct: 305 ----EKNEVSWNAMIAGYVQSQQIEKARELFDQMPSR-----NTSSWNTMVTGYAQCGNI 355
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
+QA+ + +P + + W ++ + G E
Sbjct: 356 DQAKILFDEMPQR--DCISWAAMISGYAQSGQSE 387
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 117/266 (43%), Gaps = 54/266 (20%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ ++V WN I+ ++ G+ E A S+F M R+ V++ +I GY N+ + A +F +
Sbjct: 57 DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEK 116
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M P I W N ++ Y K
Sbjct: 117 M-------PDRDLI------SW----------------------------NVMLSGYVKN 135
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + +A LF + K++VSW +++SGFA +G +EA + F++M L N +++
Sbjct: 136 GNLSAARALFNQMP--EKDVVSWNAMLSGFAQNGFVEEARKIFDQM----LVKNEISWNG 189
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L+A G +E+ + FD ++ +I + CL+ R RL+ A + +P
Sbjct: 190 LLSAYVQNGRIEDARRLFDSKMD-----WEIVSWNCLMGGYVRKKRLDDARSLFDRMP-- 242
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERV 279
+ + + W ++ + +G + R+
Sbjct: 243 VRDKISWNIMITGYAQNGLLSEARRL 268
>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 133/330 (40%), Positives = 194/330 (58%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+D LFDE+ RN+V+W MITG V+ + A +F+ M R+V+SW II Y +
Sbjct: 127 LRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQN 186
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
S ++ +F RMV + +T+ AV A +G R + IH K G + ++
Sbjct: 187 GMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLES-NVF 245
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V +ID Y KCG + A K F+ + KN+ SW+++++G+ MHG KEA+E F M
Sbjct: 246 VGTSIIDMYCKCGKVEMARKAFD--RMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNM 303
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPN +TF+SVL ACSH GL+EEG +F M E +V P ++HYGC++D+LGRAG L+
Sbjct: 304 AGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLK 363
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + G+ + VVW LLGAC H NV++GE RK+ E++ G YVL+ NI
Sbjct: 364 EAFDLIKGMKLR-PDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIY 422
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ D ER+R ++ +K PG SLV
Sbjct: 423 ADAGRWEDVERMRILMKNSGLVKPPGFSLV 452
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 19/125 (15%)
Query: 148 VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS-----HGG 202
V++ N+ SW S+I+ A G EA+ F M+K+ LKPNR TF + +CS H G
Sbjct: 36 VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSG 95
Query: 203 --LVEEGLKF-FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVV 259
++ L F F+ PD+ L+DM + G L A + I N+V
Sbjct: 96 RQAHQQALIFGFE---------PDLFVSSALVDMYSKCGELRDARTLFDEISHR--NIVS 144
Query: 260 WRTLL 264
W +++
Sbjct: 145 WTSMI 149
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 130/312 (41%), Positives = 191/312 (61%), Gaps = 5/312 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL N +I K G+L+ AR LF++M R+V+SW +I GYT M ALALFR M+
Sbjct: 295 NLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREML 354
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
A EP+EIT L++ P+ G + + IH Y K FN+ +S LID YAKCG
Sbjct: 355 ASG-VEPTEITFLSILPSCAHLGAIDLGKWIHAYINK-NFNSVSTSLSTSLIDLYAKCGN 412
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
I +A ++F+ + + K+L SW ++I G AMHG +A E F +M ++PN +TF+ +L
Sbjct: 413 IVAARQVFDGMKI--KSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGIL 470
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+AC H GLV+ G +FF MV++ ++ P +HYGC+ID+LGRAG E+AE + + +
Sbjct: 471 SACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVK-P 529
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
+ +W +LLGAC HG VE+GE V ++ E+E G YVL+ NI AG ++ D R+R
Sbjct: 530 DGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRT 589
Query: 316 VVDERNALKFPG 327
+++R K PG
Sbjct: 590 RLNDRGMKKVPG 601
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 150/282 (53%), Gaps = 7/282 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + +FD+ R+ +++ +I G WG ++ AR LF+EMP ++VVSW +I GY +M
Sbjct: 180 MNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQM 239
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
RS AL LF M P+E TI++V A Q+ + + + E RG + ++
Sbjct: 240 GRSKEALLLFEDMRKAN-VPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCS-NLK 297
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N LID Y+KCG + +A +LF+D+ +ER +++SW +I G+ KEA+ F M
Sbjct: 298 LVNALIDMYSKCGDLQTARELFDDM-LER-DVISWNVMIGGYTHMCSYKEALALFREMLA 355
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++P +TFLS+L +C+H G ++ G K+ + + LID+ + G +
Sbjct: 356 SGVEPTEITFLSILPSCAHLGAIDLG-KWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIV 414
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
A +V G+ +I ++ W ++ + HG + + K+
Sbjct: 415 AARQVFDGM--KIKSLASWNAMICGLAMHGQADKAFELFSKM 454
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 130/284 (45%), Gaps = 44/284 (15%)
Query: 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTE 81
+ + + + G++ YA SLF + N+ W +I G + AL F RM+ E
Sbjct: 68 IEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSG-VE 126
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF-NAFHIHVSNCLIDTYAKCGCI---- 136
P+ T + + + + IH + K GF + IH S LI+ YA+ G +
Sbjct: 127 PNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTS--LINMYAQSGEMNNAQ 184
Query: 137 -------------FSAL--------------KLFEDISVERKNLVSWTSIISGFAMHGMG 169
F+AL +LF+++ V K++VSW ++I+G+A G
Sbjct: 185 LVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPV--KDVVSWNAMIAGYAQMGRS 242
Query: 170 KEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC 229
KEA+ FE M+K + PN T +SVL+AC+ ++ G +E+ + ++K
Sbjct: 243 KEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLG-NSMRSWIEDRGLCSNLKLVNA 301
Query: 230 LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA----CSF 269
LIDM + G L+ A ++ + +V+ W ++G CS+
Sbjct: 302 LIDMYSKCGDLQTARELFDDMLER--DVISWNVMIGGYTHMCSY 343
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 4/148 (2%)
Query: 100 VRNCQLIHGYGEKRGFNAFHIHVSNCL-IDTYAKCGCIFSALKLFEDISVERKNLVSWTS 158
+R + IH + K G + +S + ++ G I A+ LF S+E NL W S
Sbjct: 42 IRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFN--SIEEPNLFIWNS 99
Query: 159 IISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEEC 218
+I G +M A+ F RM ++PN TF +L +C+ EG K V +
Sbjct: 100 MIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEG-KQIHAHVLKL 158
Query: 219 EVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ D+ + LI+M ++G + A+ V
Sbjct: 159 GFVSDVFIHTSLINMYAQSGEMNNAQLV 186
>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
Length = 665
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 123/324 (37%), Positives = 197/324 (60%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LF+ + R++ +W +I+GLV+ G+++ AR LF+ MP R+ ++WT +IDGY ++ R A
Sbjct: 218 LFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDA 277
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L FR M C+ E T+++V A Q G + + Y + G + V N LI
Sbjct: 278 LETFRYMQICK-VRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIK-MDVFVGNALI 335
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y+KCG I AL +F+D+ ++ +WT+II G A++G G+EA++ F RM + + P+
Sbjct: 336 DMYSKCGSIERALDVFKDM--HNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPD 393
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
VTF+ VL AC+H GLV++G +FF M E + P + HYGCLID+LGRAG+L++A
Sbjct: 394 EVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTI 453
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P + N +W TLL +C +GN E+GE ++LE++ Y+L+ N+ A R+
Sbjct: 454 DKMPMK-PNSTIWGTLLASCRVYGNSEIGELAAERLLELDPDNSTAYILLSNMYAKSNRW 512
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
D R+R+++ E+ K PG S++
Sbjct: 513 KDVRRIRQIIMEKGIKKEPGCSMI 536
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 11/145 (7%)
Query: 154 VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDK 213
V W ++ISG G + + +F M + VT++SVL+AC G + G++ K
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVH-K 185
Query: 214 MVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
V E VLPD + L+DM G ++ A + G+ ++ ++ W +++ G V
Sbjct: 186 RVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGM--QMRSMASWTSVISGLVRSGQV 243
Query: 274 E--------MGERVTRKILEMERGY 290
+ M ER T M GY
Sbjct: 244 DRARDLFDHMPERDTIAWTAMIDGY 268
>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 124/318 (38%), Positives = 199/318 (62%), Gaps = 9/318 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEM--PCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
N+ +I G+++ +R +F+++ PC VV++ II R NR+N ALALFR
Sbjct: 146 NMYVVPTLINMYTACGDIDASRRVFDKIDEPC--VVAYNAIIMSLARNNRANEALALFRE 203
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
+ +P+++T+L V + G + + +H Y +K GF+ + + V+ LID YAKC
Sbjct: 204 LQEIGL-KPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRY-VKVNTTLIDMYAKC 261
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + A+ +F D+ +++ +W++II +A HG G +A+ M+K ++P+ +TFL
Sbjct: 262 GSLDDAVNVFRDMP--KRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEITFLG 319
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L ACSH GLVEEG ++F M E ++P IKHYGC++D+LGRAGRL++A K +P +
Sbjct: 320 ILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIK 379
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
T ++WRTLL ACS HGNVEMG+RV +I E++ +GGDYV+ N+ A ++ D L
Sbjct: 380 PTP-ILWRTLLSACSTHGNVEMGKRVIERIFELDDSHGGDYVIFSNLCARYGKWDDVNHL 438
Query: 314 RRVVDERNALKFPGRSLV 331
R+ + ++ A+K PG S +
Sbjct: 439 RKTMIDKGAVKIPGCSSI 456
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 117/242 (48%), Gaps = 22/242 (9%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
+E+A LF+++ N+V + + GY R+N + FRR + S++ LA
Sbjct: 75 ASMEHAHQLFDQITQPNIVLFNTMARGYARLNDPLRMITHFRRCLRLV----SKVKALA- 129
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
+ +H + K G + +++V LI+ Y CG I ++ ++F+ I +
Sbjct: 130 -----------EGKQLHCFAVKLGVSD-NMYVVPTLINMYTACGDIDASRRVFDKI--DE 175
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
+V++ +II A + EA+ F +Q++ LKP VT L VL++C+ G ++ G ++
Sbjct: 176 PCVVAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLG-RW 234
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
+ V++ +K LIDM + G L+ A V +P T W ++ A + H
Sbjct: 235 MHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQ--AWSAIIVAYATH 292
Query: 271 GN 272
G+
Sbjct: 293 GD 294
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 126/330 (38%), Positives = 199/330 (60%), Gaps = 5/330 (1%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
FL K+FDE+ ER++V+W +I K+G++E A LF+++P +++V+WT ++ GY +
Sbjct: 193 FLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQ 252
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN-AFH 119
R AL F++M E E+T+ V A Q G V++ I E+ GF + +
Sbjct: 253 NGRPKEALEYFQKMQDVG-METDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGN 311
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+ V + LID Y+KCG A K+FE ++ +N+ S++S+I G+AMHG A++ F M
Sbjct: 312 VVVGSALIDMYSKCGSPDEAYKVFE--VMKERNVFSYSSMILGYAMHGRAHSALQLFHDM 369
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
K ++PN+VTF+ +L+ACSH GLVE+G + F KM + V P HY C++D+LGRAG
Sbjct: 370 LKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGC 429
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
LE+A + +P E N VW LLGAC HGN ++ + ++ ++E G+Y+L+ N
Sbjct: 430 LEEALDLVKTMPME-PNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSN 488
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRS 329
I A R+ + +LR+V+ E+ K PG S
Sbjct: 489 IYASAGRWEEVSKLRKVIREKGFKKNPGCS 518
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 126/285 (44%), Gaps = 35/285 (12%)
Query: 34 EYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPA 93
Y +F ++ N WT +I GY + + + RM + P T A+F A
Sbjct: 93 SYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRR-DGVGPVSFTFSALFKA 151
Query: 94 IWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS------ 147
++ + +H G A ++V N +ID Y KCG + A K+F+++S
Sbjct: 152 CGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVS 211
Query: 148 -----------------------VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
+ K++V+WT++++G+A +G KEA+E F++MQ V +
Sbjct: 212 WTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGM 271
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP--DIKHYGCLIDMLGRAGRLEQ 242
+ + VT V++AC+ G V+ + + E P ++ LIDM + G ++
Sbjct: 272 ETDEVTLAGVISACAQLGAVKHA-NWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDE 330
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME 287
A KV + NV + +++ + HG ++ +L+ E
Sbjct: 331 AYKVFEVMKER--NVFSYSSMILGYAMHGRAHSALQLFHDMLKTE 373
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 124/330 (37%), Positives = 196/330 (59%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ LF ++P +N+ +WNVMI GL K G L AR LF+EM R+ +SW+ ++DGY
Sbjct: 213 LEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISA 272
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R AL +F++M E T P + +V A G + + +H Y KR
Sbjct: 273 GRYKEALEIFQQMQR-EETRPGRFILSSVLAACSNIGAIDQGRWVHAY-LKRNSIKLDAV 330
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ L+D YAKCG + ++FE++ + + + +W ++I G A+HG ++A+E F ++Q+
Sbjct: 331 LGTALLDMYAKCGRLDMGWEVFEEM--KEREIFTWNAMIGGLAIHGRAEDALELFSKLQE 388
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPN +T + VL AC+H G V++GL+ F M E V P+++HYGC++D+LGR+G
Sbjct: 389 GRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFS 448
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AE + + +P + N VW LLGAC HGN ++ ERV + +LE+E G YVL+ NI
Sbjct: 449 EAEDLINSMPMK-PNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIY 507
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A V R+ D ++R+++ R PG S+V
Sbjct: 508 AKVGRFDDVSKIRKLMKNRGIKTVPGVSIV 537
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 128/331 (38%), Gaps = 82/331 (24%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+F +P N+ WN++I G ++ +L A + M +ID R N
Sbjct: 88 KVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRM----------VIDA-----RPN- 131
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS--- 123
++T P+ +V A+ + + + HG G + I +
Sbjct: 132 -----------KFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASF 180
Query: 124 --------------------NCLIDTYAKCGCIFSALKLFEDISVE-------------- 149
N +ID Y KCG + +A LF + V+
Sbjct: 181 GRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAK 240
Query: 150 ---------------RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
++ +SW+S++ G+ G KEA+E F++MQ+ +P R SV
Sbjct: 241 GGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSV 300
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L ACS+ G +++G ++ ++ + D L+DM + GRL+ +V +
Sbjct: 301 LAACSNIGAIDQG-RWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKER- 358
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
+ W ++G + HG E + K+ E
Sbjct: 359 -EIFTWNAMIGGLAIHGRAEDALELFSKLQE 388
>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 122/316 (38%), Positives = 197/316 (62%), Gaps = 9/316 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ D KLFDE+PERN+V+W+ M+ G K G++E AR LF++MP +N+VSWT I+ G+
Sbjct: 234 MDDAFKLFDEMPERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEK 293
Query: 62 NRSNGALALFRRM-VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+ A++LF +M AC + T++++ A ++G + + IH + F
Sbjct: 294 GLAREAISLFDQMEKACLKLDNG--TVMSILAACAESGLLGLGEKIHASIKNNNFKC-TT 350
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+SN L+D YAKCG + A +F DI + K++VSW +++ G AMHG G +A+E F+RM+
Sbjct: 351 EISNALVDMYAKCGRLNIAYDVFNDI--KNKDVVSWNAMLQGLAMHGHGVKALELFKRMK 408
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ PN+VT + VL AC+H GL+++G+++F M + ++P+++HYGC++D+LGR GRL
Sbjct: 409 EEGFSPNKVTMIGVLCACTHAGLIDDGIRYFSTMERDYTLVPEVEHYGCMVDLLGRKGRL 468
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+A ++ +P N ++W TLLGAC H VE+ V ++E+E G++ ++ NI
Sbjct: 469 EEAIRLIRNMPMA-PNAIIWGTLLGACRMHNAVELAREVLDHLVELEPTDSGNFSMLSNI 527
Query: 301 L--AGVWRYGDAERLR 314
AG W RLR
Sbjct: 528 YAAAGDWNCVANTRLR 543
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 145/309 (46%), Gaps = 57/309 (18%)
Query: 5 GSKLFDEL-PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
KLF + R++V+WN MI+GL K G E AR +F+EMP ++ +SW ++DGY ++ +
Sbjct: 174 AKKLFVSMGARRDVVSWNSMISGLAKGGLYEEARKVFDEMPEKDGISWNTMLDGYVKVGK 233
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
+ A LF M E +++ W
Sbjct: 234 MDDAFKLFDEM--------PERNVVS-----WST-------------------------- 254
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
++ Y K G + A LF+ + V KNLVSWT I+SGFA G+ +EA+ F++M+K
Sbjct: 255 --MVLGYCKAGDMEMARMLFDKMPV--KNLVSWTIIVSGFAEKGLAREAISLFDQMEKAC 310
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
LK + T +S+L AC+ GL+ G K ++ + L+DM + GRL A
Sbjct: 311 LKLDNGTVMSILAACAESGLLGLGEKIHAS-IKNNNFKCTTEISNALVDMYAKCGRLNIA 369
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGN----VEMGERVTRKILEMERGYGGDYVLMYN 299
V + I ++ +VV W +L + HG+ +E+ +R+ E G+ + V M
Sbjct: 370 YDVFNDIKNK--DVVSWNAMLQGLAMHGHGVKALELFKRMK------EEGFSPNKVTMIG 421
Query: 300 ILAGVWRYG 308
+L G
Sbjct: 422 VLCACTHAG 430
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 135/278 (48%), Gaps = 30/278 (10%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM-----VAC 77
+I+ ++ A + F ++ NV + +I ++ ++ + A A F M A
Sbjct: 58 LISAFSLCRQMLLATNAFNQVQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYAD 117
Query: 78 EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC-- 135
+T P + + +W + + +H EK GF + + V N LID+Y+KCG
Sbjct: 118 NFTFPFLLKVCT--GNVW----LPVIESVHAQIEKFGFMS-DVFVPNSLIDSYSKCGSCG 170
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
I +A KLF + R+++VSW S+ISG A G+ +EA + F+ M + + +++ ++L
Sbjct: 171 ISAAKKLFVSMGA-RRDVVSWNSMISGLAKGGLYEEARKVFDEMP----EKDGISWNTML 225
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+ G +++ K FD+M E ++ + ++ +AG +E A + +P +
Sbjct: 226 DGYVKVGKMDDAFKLFDEMPER-----NVVSWSTMVLGYCKAGDMEMARMLFDKMP--VK 278
Query: 256 NVVVWRTLLGACSFHG----NVEMGERVTRKILEMERG 289
N+V W ++ + G + + +++ + L+++ G
Sbjct: 279 NLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNG 316
>gi|147811906|emb|CAN68178.1| hypothetical protein VITISV_000846 [Vitis vinifera]
Length = 633
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 125/315 (39%), Positives = 199/315 (63%), Gaps = 7/315 (2%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
L +P +N+V+WN++I ++ G++E A+++F+EMP R+ VSW +I GY ++
Sbjct: 204 ADSLIGSMPGKNVVSWNMLIARYIRLGKIEDAKAVFQEMPERDAVSWNSMIAGYVQIKDY 263
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
ALALFR M E ++IT+++V A + G + + IH ++R + ++SN
Sbjct: 264 ARALALFREMEIAN-VEATDITLISVLGACAETGALEIGRKIHLSLKQREYK-IEGYLSN 321
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV- 183
L+D YAKCG + A ++F ++ + K++ W ++I A+HG +EA+ F M+ V
Sbjct: 322 ALVDMYAKCGHLNLAWEVFSELKM--KHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVD 379
Query: 184 -LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
+PNRVTF+ VL ACSH GLV+EG KFF++MV E +++PDIKHYGC++D+L R G L++
Sbjct: 380 GARPNRVTFIGVLIACSHKGLVDEGRKFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKE 439
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302
A + +P E N V+WRTLLGAC H +V++ E +++ +ME GDYVL+ NI A
Sbjct: 440 AHHMIKTMPFE-ANSVLWRTLLGACRVHHHVDLAEESFQQLGKMEPLRDGDYVLLSNIYA 498
Query: 303 GVWRYGDAERLRRVV 317
R+ D ER +++
Sbjct: 499 EAQRWNDVERASKIL 513
>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Glycine max]
Length = 609
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 124/318 (38%), Positives = 198/318 (62%), Gaps = 9/318 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEM--PCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
N+ +I +++ AR +F+++ PC VV++ II R +R N ALALFR
Sbjct: 169 NMYVCPTLINMYTACNDVDAARRVFDKIGEPC--VVAYNAIITSCARNSRPNEALALFRE 226
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
+ +P+++T+L + G + + IH Y +K GF+ + + V+ LID YAKC
Sbjct: 227 LQE-SGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQY-VKVNTALIDMYAKC 284
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + A+ +F+D+ R++ +W+++I +A HG G +A+ M+K ++P+ +TFL
Sbjct: 285 GSLDDAVSVFKDMP--RRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLG 342
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L ACSH GLVEEG ++F M E ++P IKHYGC+ID+LGRAGRLE+A K +P +
Sbjct: 343 ILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIK 402
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
T ++WRTLL +CS HGNVEM + V ++I E++ +GGDYV++ N+ A R+ D L
Sbjct: 403 PTP-ILWRTLLSSCSSHGNVEMAKLVIQRIFELDDSHGGDYVILSNLCARNGRWDDVNHL 461
Query: 314 RRVVDERNALKFPGRSLV 331
R+++ ++ ALK PG S +
Sbjct: 462 RKMMVDKGALKVPGCSSI 479
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 126/304 (41%), Positives = 197/304 (64%), Gaps = 5/304 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
++V WNVMI G V+ GELE AR+LF+EMP R+VVSW +I GY + A+ +FR M
Sbjct: 169 DVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQ 228
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
E P+ +T+++V PA+ + G + + +H Y + + + + LID YAKCG
Sbjct: 229 MAE-VPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDV-LGSALIDMYAKCGS 286
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
I AL++FE + ++N+V+W++II+G AMHG K+ +++FE M++ + P+ VT++ +L
Sbjct: 287 IEKALQVFEGLP--KRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLL 344
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+ACSH GLV EG FFD MV + P I+HYGC++D+LGRAG LE++E++ +P +
Sbjct: 345 SACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPD 404
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
+ V+W+ LLGAC HGNVEMG+RV ++E+ G YV + NI A + + ++R
Sbjct: 405 D-VIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRL 463
Query: 316 VVDE 319
++ E
Sbjct: 464 MMKE 467
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 124/288 (43%), Gaps = 50/288 (17%)
Query: 32 ELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVF 91
+L+YAR +F M N S+ +I + N AL +F MV EP+ T +VF
Sbjct: 37 DLDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVF 96
Query: 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS---------------------------- 123
A + +R + +HG K G ++ VS
Sbjct: 97 KACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGC 156
Query: 124 -----------------NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 166
N +ID Y + G + A LF+++ ++++VSW +I+G+A
Sbjct: 157 DGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMP--QRSVVSWNVMIAGYAQS 214
Query: 167 GMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH 226
G KEAVE F MQ + PN VT +SVL A S G +E G K+ + D
Sbjct: 215 GHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELG-KWVHLYAVRNNIGVDDVL 273
Query: 227 YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
LIDM + G +E+A +V G+P NVV W T++ + HG +
Sbjct: 274 GSALIDMYAKCGSIEKALQVFEGLPKR--NVVTWSTIIAGLAMHGRAK 319
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 44/177 (24%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV----VSWTGIIDGYTRMN 62
++F+ LP+RN+VTW+ +I GL G + FE+M V V++ G++ +
Sbjct: 292 QVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAG 351
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV 122
N F MV EP I YG
Sbjct: 352 LVNEGRWFFDHMVRVSGLEPR----------------------IEHYG------------ 377
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKEAVENF 176
C++D + G + + +L ++ ++ +++ W +++ MHG MGK E+
Sbjct: 378 --CMVDLLGRAGLLEESEELILNMPIKPDDVI-WKALLGACKMHGNVEMGKRVAEHL 431
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 122/326 (37%), Positives = 201/326 (61%), Gaps = 9/326 (2%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FD + R++++W ++TG G++ AR+ F++MP R+ VSWT +IDGY ++NR
Sbjct: 277 IFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEV 336
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR--GFNAFHIHVSNC 125
L+LFR M A +P E T++++ A G + + I Y +K ++F V N
Sbjct: 337 LSLFREMQAAN-IKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSF---VGNA 392
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
LID Y CG + A+++F ++ ++ +SWT++I G A++G G+EA++ F +M K +
Sbjct: 393 LIDMYFNCGNVEKAIRIFN--AMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASIT 450
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
P+ VT + VL AC+H G+V++G KFF +M + + P++ HYGC++D+LGRAG L++A +
Sbjct: 451 PDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHE 510
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
V +P + N +VW +LLGAC H + EM E ++ILE+E G YVL+ NI A
Sbjct: 511 VIKNMPVK-PNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGAVYVLLCNIYAACN 569
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
R+ +R+++ +R K PG SL+
Sbjct: 570 RWEKLHEVRKLMMDRGIKKTPGCSLI 595
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 139/303 (45%), Gaps = 38/303 (12%)
Query: 2 LKDGSKLFDELPE----RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDG 57
+K G +L D + + N+ N +I GE+ AR +F+ +VV+W +I G
Sbjct: 135 VKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISG 194
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
Y R + + ++ LF M PS IT+++V A + D+ + +H Y +
Sbjct: 195 YNRSKQFDESMKLFDEMERMRVL-PSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEP 253
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDI-----------------------------SV 148
+ + N LID YA CG + +AL +F+++ +
Sbjct: 254 VRV-LENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKM 312
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
++ VSWT++I G+ KE + F MQ +KP+ T +S+L AC+H G +E G
Sbjct: 313 PERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELG- 371
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
++ +++ E+ D LIDM G +E+A ++ + +P + + W ++ +
Sbjct: 372 EWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHR--DKISWTAVIFGLA 429
Query: 269 FHG 271
+G
Sbjct: 430 ING 432
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 130/259 (50%), Gaps = 15/259 (5%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTE----PSEIT 86
G++EYAR +F+ MP N W +I GY+R+ N A++++ CE E P E T
Sbjct: 67 GDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMY-----CEMLERGVMPDEYT 121
Query: 87 ILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI 146
+ ++ V+ + +H + K GF++ ++ V N LI Y+ G + A +F+
Sbjct: 122 YPFLLKRFTRDTAVKCGRELHDHIVKLGFSS-NVFVQNALIHLYSLSGEVSVARGVFDRS 180
Query: 147 SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEE 206
S + ++V+W +ISG+ E+++ F+ M+++ + P+ +T +SVL+ACS +
Sbjct: 181 S--KGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNV 238
Query: 207 GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
G K + V++ ++ P LIDM G ++ A + + S +V+ W ++
Sbjct: 239 G-KRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSR--DVISWTAIVTG 295
Query: 267 CSFHGNVEMGERVTRKILE 285
+ G V + K+ E
Sbjct: 296 FTNLGQVGLARNYFDKMPE 314
>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 127/341 (37%), Positives = 195/341 (57%), Gaps = 28/341 (8%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++ +LFD++P RN +WN M+TG + G ++ A+ LF+EMP R+ +SW +I GY +
Sbjct: 324 IEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQS 383
Query: 62 NRSNGALALFRRM-----------VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYG 110
+S AL LF +M +AC + +EI L + + +HG
Sbjct: 384 GQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALEL------------GKQLHGRL 431
Query: 111 EKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 170
K GF +I N L+ Y KCG I A +FEDI+ K++VSW ++I+G+A HG GK
Sbjct: 432 VKAGFQTGYI-AGNALLAMYGKCGSIEEAFDVFEDIT--EKDIVSWNTMIAGYARHGFGK 488
Query: 171 EAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCL 230
EA+ FE M K+ +KP+ VT + VL+ACSH G V++G+++F+ M + + + KHY C+
Sbjct: 489 EALALFESM-KMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCM 547
Query: 231 IDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 290
ID+LGRAGRL++A + +P + W LLGA HG+ E+GE+ K+ EME
Sbjct: 548 IDLLGRAGRLDEALNLMKSMPF-YPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDN 606
Query: 291 GGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
G YVL+ N+ A R+ + +R + ++ K PG S V
Sbjct: 607 SGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWV 647
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 138/270 (51%), Gaps = 15/270 (5%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D LFD +P R+ ++WN+MITG + G L AR LFEE+P R+V +WT ++ G+ +
Sbjct: 231 LDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQN 290
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ A +F M E +E++ A+ Q+ + + + R +++
Sbjct: 291 GMLDEATRIFEEM-----PEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSW--- 342
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
N ++ YA+CG I A LF+++ +++ +SW ++ISG+A G +EA+ F +M++
Sbjct: 343 --NTMVTGYAQCGNIDQAKILFDEMP--QRDCISWAAMISGYAQSGQSEEALHLFIKMKR 398
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
NR L++C+ +E G + ++V+ I L+ M G+ G +E
Sbjct: 399 DGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAG-NALLAMYGKCGSIE 457
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+A V I + ++V W T++ + HG
Sbjct: 458 EAFDVFEDITEK--DIVSWNTMIAGYARHG 485
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 145/276 (52%), Gaps = 33/276 (11%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+F+++P+R+L++WNVM++G VK G L AR+LF +MP ++VVSW ++ G+ +
Sbjct: 112 KVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEE 171
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA---FHIHVS 123
A +F +M+ +EI+ + A QNG + + +R F++ + I
Sbjct: 172 ARKIFDQMLV-----KNEISWNGLLSAYVQNGRIEDA--------RRLFDSKMDWEIVSW 218
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
NCL+ Y + + A LF+ + V K +SW +I+G+A +G+ EA FE +
Sbjct: 219 NCLMGGYVRKKRLDDARSLFDRMPVRDK--ISWNIMITGYAQNGLLSEARRLFEEL---- 272
Query: 184 LKPNRVTF--LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
P R F ++++ G+++E + F++M E+ EV + +I ++ ++E
Sbjct: 273 --PIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEV-----SWNAMIAGYVQSQQIE 325
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGE 277
+A ++ +PS N W T++ + GN++ +
Sbjct: 326 KARELFDQMPSR--NTSSWNTMVTGYAQCGNIDQAK 359
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 123/274 (44%), Gaps = 54/274 (19%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
F+++ K+FD++ +N ++WN +++ V+ G +E AR LF+ +VSW ++ GY R
Sbjct: 168 FVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVR 227
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
R + A +LF RM P I W
Sbjct: 228 KKRLDDARSLFDRM-------PVRDKI------SW------------------------- 249
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
N +I YA+ G + A +LFE++ + +++ +WT+++SGF +GM EA FE M
Sbjct: 250 ---NIMITGYAQNGLLSEARRLFEELPI--RDVFAWTAMVSGFVQNGMLDEATRIFEEMP 304
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ N V++ +++ +E+ + FD+M + + ++ + G +
Sbjct: 305 ----EKNEVSWNAMIAGYVQSQQIEKARELFDQMPSR-----NTSSWNTMVTGYAQCGNI 355
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
+QA+ + +P + + W ++ + G E
Sbjct: 356 DQAKILFDEMPQR--DCISWAAMISGYAQSGQSE 387
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 117/266 (43%), Gaps = 54/266 (20%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ ++V WN I+ ++ G+ E A S+F M R+ V++ +I GY N+ + A +F +
Sbjct: 57 DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEK 116
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M P I W N ++ Y K
Sbjct: 117 M-------PDRDLI------SW----------------------------NVMLSGYVKN 135
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + +A LF + K++VSW +++SGFA +G +EA + F++M L N +++
Sbjct: 136 GNLSAARALFNQMP--EKDVVSWNAMLSGFAQNGFVEEARKIFDQM----LVKNEISWNG 189
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L+A G +E+ + FD ++ +I + CL+ R RL+ A + +P
Sbjct: 190 LLSAYVQNGRIEDARRLFDSKMD-----WEIVSWNCLMGGYVRKKRLDDARSLFDRMP-- 242
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERV 279
+ + + W ++ + +G + R+
Sbjct: 243 VRDKISWNIMITGYAQNGLLSEARRL 268
>gi|326530063|dbj|BAK08311.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 490
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 127/326 (38%), Positives = 199/326 (61%), Gaps = 6/326 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFDE+P NLV+WN ++ G K +L AR +F MP R+VVSW+ +IDG +
Sbjct: 117 RLFDEIPRPNLVSWNALLDGYAKCRDLLSARCVFNRMPQRDVVSWSAMIDGCVKCGEHRE 176
Query: 67 ALALFRRMVAC---EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
ALALF M A +++T+++V A GD+ + +H Y ++ GF ++ ++
Sbjct: 177 ALALFEMMEAAGAGNGVRANDVTMVSVLGACAHLGDLGRGRQMHRYLQEHGF-LLNLRLA 235
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
L+D YAKCG I AL++F + V +++ W ++I G A+HG+ E+VE F+ MQ
Sbjct: 236 TSLVDMYAKCGAISEALEVFRAVPVTTTDVLIWNAVIGGLAVHGLSMESVEIFQEMQNSG 295
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
+ P+ +T+L +L+AC HGGLV E + F + +E + P ++HY CL+D+LGRAG LE+A
Sbjct: 296 VVPDEITYLVLLSACVHGGLVGEAWRLF-RSLEVQGLRPHVEHYACLVDVLGRAGHLEEA 354
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
V +P E NV V LL AC HG VE+GE V R++++++ + G Y+ + NI A
Sbjct: 355 YGVVKSMPME-PNVSVLGALLNACHLHGWVELGEVVGRQLVQLQPDHDGRYIGLSNIYAI 413
Query: 304 VWRYGDAERLRRVVDERNALKFPGRS 329
R+ +A++ R+V++ER K PG S
Sbjct: 414 ARRWQEAKKARKVMEERGVKKIPGFS 439
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 38/225 (16%)
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
PS +T + A + R +H + + G + ++V+N L+ YA C A +
Sbjct: 58 PSHLTFPFLGRAAARLASPRLALSLHAHPLRLGLLPWDLYVANSLVHMYAACALPDLARR 117
Query: 142 LFEDISVERKNLVSWTSIISGFA-------------------------------MHGMGK 170
LF++I R NLVSW +++ G+A G +
Sbjct: 118 LFDEIP--RPNLVSWNALLDGYAKCRDLLSARCVFNRMPQRDVVSWSAMIDGCVKCGEHR 175
Query: 171 EAVENFERMQKV----VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH 226
EA+ FE M+ ++ N VT +SVL AC+H G + G + + ++E L +++
Sbjct: 176 EALALFEMMEAAGAGNGVRANDVTMVSVLGACAHLGDLGRG-RQMHRYLQEHGFLLNLRL 234
Query: 227 YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
L+DM + G + +A +V +P T+V++W ++G + HG
Sbjct: 235 ATSLVDMYAKCGAISEALEVFRAVPVTTTDVLIWNAVIGGLAVHG 279
>gi|242042285|ref|XP_002468537.1| hypothetical protein SORBIDRAFT_01g047570 [Sorghum bicolor]
gi|241922391|gb|EER95535.1| hypothetical protein SORBIDRAFT_01g047570 [Sorghum bicolor]
Length = 495
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 127/332 (38%), Positives = 201/332 (60%), Gaps = 12/332 (3%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FDE+P NLV+WN ++ G K +L AR +F MP R+VVSW+ +IDG +
Sbjct: 116 RVFDEIPRPNLVSWNALLDGYAKCRDLPAARQVFARMPQRDVVSWSAMIDGCVKCGEHRE 175
Query: 67 ALALFRRM--VACEYTE-------PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
ALALF M A E +++T+++V A GD+ + +H +RGF
Sbjct: 176 ALALFEMMENAAARSVEDGGGGARANDVTMVSVLGACANLGDLERGRWVHRCLRERGF-P 234
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
++ ++ L+D YAKCG I AL++F + VE +++ W ++I G A+HGM E+VE F+
Sbjct: 235 LNLKLATSLVDMYAKCGAIHEALEMFWAVPVESTDVLIWNAVIGGLAVHGMATESVEIFQ 294
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
MQ + P+ +T+L +L+AC HGGLV+E KFF + +E + P ++HY CL+D+LGRA
Sbjct: 295 EMQCAGVAPDEITYLCLLSACVHGGLVDEAWKFF-RSLEAQGLRPHVEHYACLVDVLGRA 353
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297
GRLE+ V +P + +V V L AC HG VE+GE V R++++++ + G Y+ +
Sbjct: 354 GRLEEVYGVVKSMPMK-PSVSVLGAFLNACHLHGWVELGEVVGRQLVQLQPDHDGRYIGL 412
Query: 298 YNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
NI A R+ +A++ R+V+++R K PG S
Sbjct: 413 SNIYAVARRWQEAKKARKVMEDRGVKKVPGFS 444
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 44/199 (22%)
Query: 114 GFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFA--------- 164
G +HV+N L+ YA C A ++F++I R NLVSW +++ G+A
Sbjct: 89 GLLPADLHVANSLVHMYAACAMPDHAHRVFDEIP--RPNLVSWNALLDGYAKCRDLPAAR 146
Query: 165 ----------------------MHGMGKEAVENFERMQKVV----------LKPNRVTFL 192
G +EA+ FE M+ + N VT +
Sbjct: 147 QVFARMPQRDVVSWSAMIDGCVKCGEHREALALFEMMENAAARSVEDGGGGARANDVTMV 206
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
SVL AC++ G +E G ++ + + E ++K L+DM + G + +A ++ +P
Sbjct: 207 SVLGACANLGDLERG-RWVHRCLRERGFPLNLKLATSLVDMYAKCGAIHEALEMFWAVPV 265
Query: 253 EITNVVVWRTLLGACSFHG 271
E T+V++W ++G + HG
Sbjct: 266 ESTDVLIWNAVIGGLAVHG 284
>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 120/302 (39%), Positives = 200/302 (66%), Gaps = 9/302 (2%)
Query: 32 ELEYARSLFEEM--PCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILA 89
+++ A+ +F+E+ PC VVS+ II GY R +R N AL+LFR++ A +P+++T+L+
Sbjct: 177 DVDGAQRVFDEILEPC--VVSYNAIITGYARSSRPNEALSLFRQLQA-RKLKPNDVTVLS 233
Query: 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE 149
V + G + + IH Y +K G + + + V+ LID YAKCG + A+ +FE +SV
Sbjct: 234 VLSSCALLGALDLGKWIHEYVKKNGLDKY-VKVNTALIDMYAKCGSLDGAISVFESMSV- 291
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
++ +W+++I +AMHG G++ + FE M + ++P+ +TFL +L ACSH GLV+EG +
Sbjct: 292 -RDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFR 350
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
+F M E ++P IKHYGC++D+LGRAG L +A K +P + T ++WRTLL +CS
Sbjct: 351 YFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTP-ILWRTLLSSCSS 409
Query: 270 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
HGN+E+ ++V +ILE++ +GGDYV++ N+ A ++ D + LR+++ + A+K PG S
Sbjct: 410 HGNLELAKQVMNQILELDDSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGCS 469
Query: 330 LV 331
+
Sbjct: 470 SI 471
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 132/264 (50%), Gaps = 20/264 (7%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR-----MVACEYTEPSEI 85
++YA LFE +P ++V + + GY+R N A++LF + ++ +YT PS +
Sbjct: 75 ASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLL 134
Query: 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFED 145
V A +Q G +C I K G N + +V LI+ YA C + A ++F++
Sbjct: 135 KACVVAKA-FQQGKQLHCLAI-----KLGLNE-NPYVCPTLINMYAGCNDVDGAQRVFDE 187
Query: 146 ISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVE 205
I +VS+ +II+G+A EA+ F ++Q LKPN VT LSVL++C+ G ++
Sbjct: 188 IL--EPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALD 245
Query: 206 EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
G K+ + V++ + +K LIDM + G L+ A V + + + W ++
Sbjct: 246 LG-KWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESM--SVRDTQAWSAMIV 302
Query: 266 ACSFHGNVEMGERVTRKILEMERG 289
A + HG G+ V EM R
Sbjct: 303 AYAMHGQ---GQDVMSMFEEMARA 323
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 66/152 (43%), Gaps = 12/152 (7%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
+I K G L+ A S+FE M R+ +W+ +I Y + +++F M +
Sbjct: 267 TALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAK-V 325
Query: 81 EPSEITILAVFPAIWQNGDVRN-----CQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
+P EIT L + A G V + YG G + C++D + G
Sbjct: 326 QPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHY-----GCMVDLLGRAGL 380
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHG 167
+ A K +++ ++ ++ W +++S + HG
Sbjct: 381 LHEAYKFIDELPIKPTPIL-WRTLLSSCSSHG 411
>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
Length = 1033
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 127/325 (39%), Positives = 193/325 (59%), Gaps = 3/325 (0%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
S+LFDE+PER+LV+ N MI G K G E A +FE M ++VV+WT +I Y +
Sbjct: 194 ASELFDEMPERDLVSCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQNRCP 253
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
AL LFR M++ P I++V AI G V + +H Y + +
Sbjct: 254 MKALDLFREMLSLG-LRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGS 312
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LID Y+KCG I +A +F IS R+N+ W S+ISG A+HG+ +EA++ F M+++ +
Sbjct: 313 ALIDMYSKCGYIENAYHVFRSIS-HRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDI 371
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
+PN +TFL +L+ CSHGGLVEEG +F+ M E+ +++P I+HYGC+ID+ GRAGRLE A
Sbjct: 372 EPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDAL 431
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
V +P E +++ W+ +L A HG++E+G+ + +E+ YVL+ NI A
Sbjct: 432 GVIQNMPFE-ADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKA 490
Query: 305 WRYGDAERLRRVVDERNALKFPGRS 329
R+ D ++R ++ +R K G S
Sbjct: 491 GRWDDVAKIRLMMRQRGVKKIAGCS 515
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 134/319 (42%), Gaps = 66/319 (20%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVAC-EYTEPSEITILA 89
G L+YA S+F + N + +I G++ + +L L+ RM++C Y+ E +I +
Sbjct: 55 GGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPS 114
Query: 90 VFPA---------------------IWQNGDVRNC--QLIHGYGE----KRGFNAF---H 119
V A +W + V N ++ +GE +R F+
Sbjct: 115 VLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRD 174
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDI-----------------------------SVER 150
+ N +I Y K G I A +LF+++ ++
Sbjct: 175 VVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKCGRCELAEKVFETMSD 234
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
K++V+WTS+IS + + +A++ F M + L+P+ +SVL+A + G VEEG K+
Sbjct: 235 KDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEG-KW 293
Query: 211 FDKMVEECEVLPDIKHYG-CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
V ++ G LIDM + G +E A V I S N+ W +++ +
Sbjct: 294 LHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSI-SHRRNIGDWNSMISGLAI 352
Query: 270 HGNVEMGERVTRKILEMER 288
HG + +EMER
Sbjct: 353 HG---LAREALDIFVEMER 368
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 198/325 (60%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FD + +RN+V+WN MI G K G L AR LF++MP R+V+SWT +I Y++ +
Sbjct: 952 RVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGK 1011
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ LF+ M+ + +P EIT+ +V A G + + +H Y K NA I+V N L
Sbjct: 1012 AVRLFQEMMVTK-VKPDEITVASVLSACAHIGALDVGEAVHEYIRKYDVNA-DIYVGNAL 1069
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y KCG + L +FE++ +++ VSWTS+I+G A++G A+ F M + ++P
Sbjct: 1070 IDMYCKCGAVEKGLSVFEEMG--KRDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRP 1127
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
TF+ VL AC+H G+V++GL++F+ M + P++KHYGC++D+L R+G L +A +
Sbjct: 1128 THGTFVGVLLACAHAGVVDKGLEYFESMERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEF 1187
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P + +VVVWR LL A HGN+ + E T+K+LE + G+Y+L N AG R
Sbjct: 1188 IKRMPMD-PDVVVWRILLSASQVHGNLHLAEIATKKLLETDPSNSGNYILSSNTYAGSNR 1246
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ D ++RR+++E N K S V
Sbjct: 1247 WEDVIKMRRLMEESNVHKPSASSSV 1271
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 141/291 (48%), Gaps = 36/291 (12%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ +L N +I G + EL +AR +F+EM R++VSW +I GY R R + L +F
Sbjct: 827 DSDLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEE 886
Query: 74 MVACEYTEPSEITILAVFPA----------------IWQNG---DVR-NCQLIHGYGE-- 111
M + + +T++ V A I +N DV LI YG
Sbjct: 887 MRMAD-VKGDAVTMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRS 945
Query: 112 -----KRGFNAFHIH--VS-NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 163
+R F+ VS N +I Y K G + +A KLF+D+ ++++SWTS+IS +
Sbjct: 946 MVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMP--HRDVISWTSMISSY 1003
Query: 164 AMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD 223
+ G +AV F+ M +KP+ +T SVL+AC+H G ++ G + + + + +V D
Sbjct: 1004 SQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALDVG-EAVHEYIRKYDVNAD 1062
Query: 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
I LIDM + G +E+ V + + V W +++ + +G+ +
Sbjct: 1063 IYVGNALIDMYCKCGAVEKGLSVFEEMGKR--DSVSWTSVIAGLAVNGSAD 1111
>gi|414864742|tpg|DAA43299.1| TPA: hypothetical protein ZEAMMB73_867482 [Zea mays]
Length = 501
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 126/336 (37%), Positives = 205/336 (61%), Gaps = 14/336 (4%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
+++FDE+P NLV+WN ++ G K +L AR +F MP R+VVSW+ +IDG +
Sbjct: 116 ANRVFDEIPRPNLVSWNALLDGYAKCHDLPAARKVFARMPQRDVVSWSAMIDGCVKCGEH 175
Query: 65 NGALALFRRM--VACEYTE---------PSEITILAVFPAIWQNGDVRNCQLIHGYGEKR 113
ALALF M A E +++T+++V A Q GD+ + H +R
Sbjct: 176 REALALFEMMENAAARSAEEEDGGGGARANDVTMVSVLGACAQLGDLERGRRAHRCLRER 235
Query: 114 GFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAV 173
GF A ++ ++ L+D YAKCG I A+++F + VE +++ W ++I G A+HGM ++V
Sbjct: 236 GF-ALNLRLATSLVDMYAKCGAISEAMEVFWAVPVESTDVLIWNAVIGGLAVHGMATKSV 294
Query: 174 ENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDM 233
E F MQ+ + P+ +T+L +L+AC+HGGLV+E +FF + +E + P ++HY CL+D+
Sbjct: 295 EIFLEMQRAGVAPDEITYLCLLSACAHGGLVDEAWEFF-RSLEAQGLRPHVEHYACLVDV 353
Query: 234 LGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD 293
LGRAGRLE+ V +P + +V V LL AC HG VE+GE + R++++++ + G
Sbjct: 354 LGRAGRLEEVYGVVKSMPMK-PSVSVLGALLNACHLHGWVELGEVLGRRLVQLQPDHDGR 412
Query: 294 YVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
Y+ + NI A R+ +A++ R+V+++R K PG S
Sbjct: 413 YIGLSNIYAVARRWQEAKKARKVMEDRGVKKVPGFS 448
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 95/219 (43%), Gaps = 49/219 (22%)
Query: 114 GFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM-H------ 166
G +HV+N L+ YA C A ++F++I R NLVSW +++ G+A H
Sbjct: 91 GLLPADLHVANSLVHMYAACALPDHANRVFDEIP--RPNLVSWNALLDGYAKCHDLPAAR 148
Query: 167 ------------------------GMGKEAVENFERMQKVV------------LKPNRVT 190
G +EA+ FE M+ + N VT
Sbjct: 149 KVFARMPQRDVVSWSAMIDGCVKCGEHREALALFEMMENAAARSAEEEDGGGGARANDVT 208
Query: 191 FLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI 250
+SVL AC+ G +E G + + E L +++ L+DM + G + +A +V +
Sbjct: 209 MVSVLGACAQLGDLERGRRAHRCLRERGFAL-NLRLATSLVDMYAKCGAISEAMEVFWAV 267
Query: 251 PSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 289
P E T+V++W ++G + HG M + LEM+R
Sbjct: 268 PVESTDVLIWNAVIGGLAVHG---MATKSVEIFLEMQRA 303
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 134/364 (36%), Positives = 204/364 (56%), Gaps = 39/364 (10%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWG------------------------------ 31
++ K+FD P+R+LV+W MI G VK G
Sbjct: 191 IRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLYIIRNSNVNLDVFVGNALVDMY 250
Query: 32 ----ELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITI 87
+ +AR +F+EMP +NVVSW +I G + + +L +FR+M +P ++T+
Sbjct: 251 LKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLG-VKPDDVTL 309
Query: 88 LAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS 147
+AV + G + + +H Y ++ A + N L+D YAKCG I A +F+ +
Sbjct: 310 VAVLNSCANLGVLELGKWVHAYLDRNQIRADGF-IGNALVDMYAKCGSIDQACWVFQ--A 366
Query: 148 VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEG 207
+ RK++ S+T++I G AMHG G +A++ F M K+ ++P+ VTF+ VL ACSH GLVEEG
Sbjct: 367 MNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEG 426
Query: 208 LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC 267
K+F+ M + P ++HYGC++D+LGRAG + +AE+ +P E + V LLGAC
Sbjct: 427 RKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIE-PDAFVLGALLGAC 485
Query: 268 SFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPG 327
HG VE+GE V +KI ++E G YVLM NI + R+ DA +LR+ + ERN K PG
Sbjct: 486 KIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPG 545
Query: 328 RSLV 331
S +
Sbjct: 546 CSSI 549
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 116/275 (42%), Gaps = 46/275 (16%)
Query: 35 YARSLFEEMPCRNVVSWTGIIDGY-TRMNRSNGALALFRRMVACEYTEPSEITILAVFPA 93
YA SL ++ N+ + II G T N S L ++++M++ + P TI V A
Sbjct: 91 YALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLS-KGIVPDNYTIPFVLKA 149
Query: 94 IWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 153
++ VR + +HG K G A ++VSN L+ YA C I SA K+F D S +R +L
Sbjct: 150 CAESRAVREGEEVHGQAIKMGL-ASDVYVSNTLMRMYAVCDVIRSARKVF-DTSPQR-DL 206
Query: 154 VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDK 213
VSWT++I G+ G +E V GL
Sbjct: 207 VSWTTMIQGYVKMGFAREGV----------------------------GLY--------- 229
Query: 214 MVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
++ V D+ L+DM + G A KV +P + NVV W +++ + G
Sbjct: 230 IIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMP--VKNVVSWNSMISGLAQKGQF 287
Query: 274 EMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
+ + RK+ + G D V + +L G
Sbjct: 288 KESLYMFRKMQRL--GVKPDDVTLVAVLNSCANLG 320
>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 636
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 129/329 (39%), Positives = 202/329 (61%), Gaps = 7/329 (2%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
L +P +N+V+WN++I ++ G++E A+ +F+EMP R+ VSW +I GY ++
Sbjct: 310 ADSLIGSMPGKNVVSWNMLIARYIRLGKIEDAKVVFQEMPERDAVSWNSMIAGYVQIKDY 369
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
ALALFR M E ++IT+++V A + G + + IH ++R + ++SN
Sbjct: 370 ARALALFREMEIAN-VEATDITLISVLGACAETGALEIGRKIHLSLKQREYK-IEGYLSN 427
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV- 183
L+D YAKCG + A ++F ++ + K++ W ++I A+HG +EA+ F M+ V
Sbjct: 428 ALVDMYAKCGHLNLAWEVFSELKM--KHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVD 485
Query: 184 -LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
+PNRVTF+ VL ACSH GLV+EG FF++MV E +++PDIKHYGC++D+L R G L++
Sbjct: 486 GARPNRVTFIGVLIACSHKGLVDEGRTFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKE 545
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302
A + +P E N V+WRTLLGAC H +V++ E +++ +ME GDYVL+ NI A
Sbjct: 546 AHHMIKTMPFE-ANSVLWRTLLGACRVHHHVDLAEESFQQLGKMEPLRDGDYVLLSNIYA 604
Query: 303 GVWRYGDAERLRRVVDERNALKFPGRSLV 331
R+ D ER+R + K PG S +
Sbjct: 605 EAQRWNDVERVRSEMIGSGVPKKPGSSHI 633
>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 474
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 119/328 (36%), Positives = 197/328 (60%), Gaps = 3/328 (0%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ LFD++P R++++WN ++ G G++E +F++MP RNV SW G+I GY + R
Sbjct: 108 EARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGR 167
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
+ L F+RMV P++ T+ V A + G + +H YGE G+N ++V
Sbjct: 168 VSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVK 227
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N LID Y KCG I A+++F+ I +R++L+SW ++I+G A HG G EA+ F M+
Sbjct: 228 NALIDMYGKCGAIEIAMEVFKGI--KRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSG 285
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
+ P++VTF+ VL AC H GLVE+GL +F+ M + ++P+I+H GC++D+L RAG L QA
Sbjct: 286 ISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQA 345
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
+ + +P + + V+W TLLGA + V++GE +++++E ++V++ NI
Sbjct: 346 VEFINKMPVK-ADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYGD 404
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
R+ DA RL+ + + K G S +
Sbjct: 405 AGRFDDAARLKVAMRDTGFKKEAGVSWI 432
>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
Length = 679
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 131/330 (39%), Positives = 197/330 (59%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L ++LFD +P+++ +WN +I G +K G++ A+ LF +MP +NVVSWT +++G+++
Sbjct: 226 LVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQN 285
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL F M+ E P++ TI++ A + G + IH Y GF ++
Sbjct: 286 GDPEKALETFFCMLE-EGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFK-LNLV 343
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ L+D YAKCG I A K+F + + K L+ W+ +I G+A+HG ++A++ FE M+
Sbjct: 344 IGTALVDMYAKCGNIEHAEKVFHE--TKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKF 401
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KP+ V FL+VLNACSH G V EGLKFFD M + P +KHY ++DMLGRAGRL+
Sbjct: 402 TGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLD 461
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A K +P + VVW L AC H NVEM E ++K+L++E + G YV + N
Sbjct: 462 EALKFIRAMPI-TPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAY 520
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A V R+ DAER+R + + A K PG S +
Sbjct: 521 ASVGRWDDAERVRVSMRDHGAHKDPGWSFI 550
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 125/316 (39%), Gaps = 73/316 (23%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
I+ ++YA S+F+ +N + +I G +R +++ F M+ + + P
Sbjct: 80 FISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAENSRFESSISFFVLMLKWKIS-P 138
Query: 83 SEITILAVF--PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+T V A NG V + +H K G F V L+D Y K + SAL
Sbjct: 139 DRLTFPFVLKSAAALSNGGV--GRALHCGILKFGLE-FDSFVRVSLVDMYVKVEELGSAL 195
Query: 141 KLFEDI---------------------------------SVERKNLVSWTSIISGF-AMH 166
K+F++ S+ +K+ SW S+I+GF M
Sbjct: 196 KVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMPKKDTGSWNSLINGFMKMG 255
Query: 167 GMGK------------------------------EAVENFERMQKVVLKPNRVTFLSVLN 196
MG+ +A+E F M + +PN T +S L+
Sbjct: 256 DMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALS 315
Query: 197 ACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256
AC+ G ++ GL+ + + L ++ L+DM + G +E AEKV ++
Sbjct: 316 ACAKIGALDAGLRIHNYLSGNGFKL-NLVIGTALVDMYAKCGNIEHAEKVFH--ETKEKG 372
Query: 257 VVVWRTLLGACSFHGN 272
+++W ++ + HG+
Sbjct: 373 LLIWSVMIWGWAIHGH 388
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 98/254 (38%), Gaps = 53/254 (20%)
Query: 104 QLIHGYGEKRGFNAFHIHVSNC-----------LIDTYAKCGCIFSALKLFEDISVERKN 152
LIH H + C I + + + A+ +F+ E KN
Sbjct: 47 DLIHASNSTHKLRQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRF--ELKN 104
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS-----------HG 201
+ ++I G A + + ++ F M K + P+R+TF VL + + H
Sbjct: 105 SYLFNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHC 164
Query: 202 GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN--VVV 259
G+++ GL+ FD V L+DM + L A KV P + N V++
Sbjct: 165 GILKFGLE-FDSFVRV-----------SLVDMYVKVEELGSALKVFDESPESVKNGSVLI 212
Query: 260 WRTLLGACSFHGNVEMGE--RVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVV 317
W L+ HG MG+ + T M + G + + N G + GD R + +
Sbjct: 213 WNVLI-----HGYCRMGDLVKATELFDSMPKKDTGSWNSLIN---GFMKMGDMGRAKELF 264
Query: 318 DERNALKFPGRSLV 331
+K P +++V
Sbjct: 265 -----VKMPEKNVV 273
>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 121/325 (37%), Positives = 199/325 (61%), Gaps = 3/325 (0%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FDE+ R++ TWN +I G + G++E A LF+ MP R+VVSWT +I GY++
Sbjct: 66 QVFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYTK 125
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL +F +M + P+E+TI +VF A + G + + I Y G +++VSN L
Sbjct: 126 ALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVGERIESYARDNGLMK-NLYVSNTL 184
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
++ YA+CG I +A +F +I +R+NL SW S++ G A+HG EA++ +++M ++P
Sbjct: 185 LEMYARCGKIDAARHVFNEIG-KRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGEGIEP 243
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ VTF+ ++ AC+HGGLV +G + F M ++P ++HYGC++D+LGRAG L++A +
Sbjct: 244 DDVTFVGLILACTHGGLVAKGWQLFQSMETNFSIVPKLEHYGCMVDLLGRAGELQEAYDL 303
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P + + V+W TLLGACSFH NVE E + ++E G+YV++ NI A R
Sbjct: 304 VKSMPMK-PDSVIWGTLLGACSFHSNVEFAEIAAESLFQVEPWNPGNYVILCNIYASAQR 362
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ +LR+++ K G S++
Sbjct: 363 WDGVAKLRKLMKGGQITKAAGYSVI 387
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 112/220 (50%), Gaps = 33/220 (15%)
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
P+E+T +FPA + + ++IH + K GF+ F ++ L+D YAK G + A +
Sbjct: 8 PNELTFTFLFPACASFYSLLHGKVIHTHFIKSGFD-FDVYALTALVDMYAKLGVLMLARQ 66
Query: 142 LFEDISV-----------------------------ERKNLVSWTSIISGFAMHGMGKEA 172
+F++++V +++VSWT++ISG++ +GM +A
Sbjct: 67 VFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYTKA 126
Query: 173 VENFERMQK-VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLI 231
+E F +M+K ++PN VT SV +AC+ G +E G + + + ++ ++ L+
Sbjct: 127 LEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVGER-IESYARDNGLMKNLYVSNTLL 185
Query: 232 DMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+M R G+++ A V + I + N+ W +++ + HG
Sbjct: 186 EMYARCGKIDAARHVFNEI-GKRRNLCSWNSMMMGLAVHG 224
>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
Length = 421
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 119/328 (36%), Positives = 197/328 (60%), Gaps = 3/328 (0%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ LFD++P R++++WN ++ G G++E +F++MP RNV SW G+I GY + R
Sbjct: 55 EARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGR 114
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
+ L F+RMV P++ T+ V A + G + +H YGE G+N ++V
Sbjct: 115 VSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVK 174
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N LID Y KCG I A+++F+ I +R++L+SW ++I+G A HG G EA+ F M+
Sbjct: 175 NALIDMYGKCGAIEIAMEVFKGI--KRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSG 232
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
+ P++VTF+ VL AC H GLVE+GL +F+ M + ++P+I+H GC++D+L RAG L QA
Sbjct: 233 ISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQA 292
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
+ + +P + + V+W TLLGA + V++GE +++++E ++V++ NI
Sbjct: 293 VEFINKMPVK-ADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYGD 351
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
R+ DA RL+ + + K G S +
Sbjct: 352 AGRFDDAARLKVAMRDTGFKKEAGVSWI 379
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 125/320 (39%), Positives = 195/320 (60%), Gaps = 7/320 (2%)
Query: 12 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALF 71
L RNL T ++ K GEL+ AR LF+ M R+VV+W+ +I GYT+ +R ALA+F
Sbjct: 304 LRSRNLAT--ALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIF 361
Query: 72 RRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYA 131
M E P+++T+++V A G + + +H Y ++ + + L+D YA
Sbjct: 362 NEMQGTE-VNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDL-PLTVILGTALVDFYA 419
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191
KCGCI A+K FE + V +N +WT++I G A +G +EA+E F M + ++P VTF
Sbjct: 420 KCGCIKDAVKAFESMPV--RNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTF 477
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
+ VL ACSHG LVEEG + F M ++ + P I+HYGC++D+LGRAG +++A + +P
Sbjct: 478 IGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMP 537
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
E N VVWR LL AC+ H NVE+GE ++I+ ++ + G+Y+L+ N A V ++ +A
Sbjct: 538 IE-PNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAA 596
Query: 312 RLRRVVDERNALKFPGRSLV 331
+R+ + E+ K PG SL+
Sbjct: 597 MVRKEMKEKGVEKIPGCSLI 616
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 126/252 (50%), Gaps = 9/252 (3%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I G++ A LF + + V++W +I GY + + +F+ M+ E
Sbjct: 210 NSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGML--EVR 267
Query: 81 EP-SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSA 139
P E+T+L+V A + GD Q I Y E++G +++ L+D YAKCG + A
Sbjct: 268 APFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSR-NLATALVDMYAKCGELDKA 326
Query: 140 LKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS 199
+LF+ + +++V+W+++ISG+ +EA+ F MQ + PN VT +SVL+AC+
Sbjct: 327 RRLFD--RMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACA 384
Query: 200 HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVV 259
G +E G K+ + ++ + L+D + G ++ A K +P + N
Sbjct: 385 VLGALETG-KWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMP--VRNTWT 441
Query: 260 WRTLLGACSFHG 271
W L+ + +G
Sbjct: 442 WTALIKGMASNG 453
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 109/237 (45%), Gaps = 8/237 (3%)
Query: 31 GELEYARSLFE--EMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
L YA LF P R+ S+ +I + R AL LF M+ P + T+
Sbjct: 116 AHLSYAIRLFRLGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVA 175
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
+ + D+ + + Y KRGF V N LI YA CG + +A LF + V
Sbjct: 176 NTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQF-VLNSLIHMYASCGDVVAAHVLFHTVQV 234
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
K +++W ++I+G+ +G KE VE F+ M +V + VT LSV AC G G
Sbjct: 235 --KGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLG- 291
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
++ + EE +L L+DM + G L++A ++ + S +VV W ++
Sbjct: 292 QWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSR--DVVAWSAMIS 346
>gi|357447703|ref|XP_003594127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365519|gb|ABN09753.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355483175|gb|AES64378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 727
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 125/314 (39%), Positives = 184/314 (58%), Gaps = 3/314 (0%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
+L +WN + G +K G +++A F++M R+V SW+ +I GY + AL LF +M+
Sbjct: 382 HLESWNALTAGFIKNGMMDHALKTFDKMHVRDVFSWSTMISGYAQSEHPKMALELFHKML 441
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
A +P+E+T+++VF AI G ++ +L H Y F+ ++ LID YAKCG
Sbjct: 442 AGG-IKPNEVTMVSVFSAIATLGTLQEGKLAHEYMRSESI-PFNDNLRAALIDMYAKCGS 499
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
I SAL+ F I E ++ W +II G A HG +E F MQ+ +KPN +TF+ VL
Sbjct: 500 INSALQFFNQIRDEVSSVSPWNAIICGLASHGHASMCLEVFSDMQRFHIKPNPITFIGVL 559
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+AC H GLVE G + F M V PDIKHYGC+ID+LGRAG LE+AE++ +P E
Sbjct: 560 SACCHAGLVESGKRIFKTMKSAYNVEPDIKHYGCMIDILGRAGLLEEAEEMIRSMPME-A 618
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
++V+W TLL AC HGNV +GER + + +GG VL+ NI A ++ + +R
Sbjct: 619 DIVIWGTLLAACRTHGNVNIGERAAENLARLAPSHGGGKVLLSNIYANAGKWEEVSFVRS 678
Query: 316 VVDERNALKFPGRS 329
V+ + + PG S
Sbjct: 679 VMQGQTMDREPGYS 692
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 153/304 (50%), Gaps = 34/304 (11%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+++ +LFDE+PERNLVTWNVM+ G K G ++ AR LF+ + ++V+SW +IDGY +
Sbjct: 236 VREARRLFDEMPERNLVTWNVMLNGYAKTGLVDEARELFDGICDKDVISWGTMIDGYIQK 295
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF--- 118
R AL ++R M+ + P+E+ I+ + A + + + +HG KRGF+ +
Sbjct: 296 GRLREALEIYRAMLQTGHG-PNEVMIVNLVSACGRGTAIVDGWQLHGTVVKRGFDCYNFI 354
Query: 119 ---------------------------HIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151
H+ N L + K G + ALK F+ + V +
Sbjct: 355 QTTIIYFYAACGMMDLACLQFEVGVKDHLESWNALTAGFIKNGMMDHALKTFDKMHV--R 412
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
++ SW+++ISG+A K A+E F +M +KPN VT +SV +A + G ++EG
Sbjct: 413 DVFSWSTMISGYAQSEHPKMALELFHKMLAGGIKPNEVTMVSVFSAIATLGTLQEGKLAH 472
Query: 212 DKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ M E D LIDM + G + A + + I E+++V W ++ + HG
Sbjct: 473 EYMRSESIPFND-NLRAALIDMYAKCGSINSALQFFNQIRDEVSSVSPWNAIICGLASHG 531
Query: 272 NVEM 275
+ M
Sbjct: 532 HASM 535
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 122/245 (49%), Gaps = 33/245 (13%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+K+ LFD + V+ N+M++G V+ G+++ AR LF+ MP + VS+T +I G+ +
Sbjct: 104 IKNAQLLFDGFATLDSVSCNIMVSGYVRNGQIDNARKLFDVMPNKGCVSYTTMIMGFVQN 163
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR-------- 113
AL +F+ M +C P+++T++ V A G+V NC+++HG K
Sbjct: 164 GFFREALEVFKDMRSCGVV-PNDLTLVNVISACSHLGEVLNCRMVHGLVVKMFVVGLVIV 222
Query: 114 GFNAFHIHVS----------------------NCLIDTYAKCGCIFSALKLFEDISVERK 151
N H + N +++ YAK G + A +LF+ I K
Sbjct: 223 STNLMHAYCLCSGVREARRLFDEMPERNLVTWNVMLNGYAKTGLVDEARELFDGIC--DK 280
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
+++SW ++I G+ G +EA+E + M + PN V +++++AC G + +G +
Sbjct: 281 DVISWGTMIDGYIQKGRLREALEIYRAMLQTGHGPNEVMIVNLVSACGRGTAIVDGWQLH 340
Query: 212 DKMVE 216
+V+
Sbjct: 341 GTVVK 345
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 121/288 (42%), Gaps = 74/288 (25%)
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
SE+ +++ + + + IH K G + F+ + N LI+ YAKCG I +A L
Sbjct: 52 SELALVSALKSCSSLSFISQGRQIHSLIFKLGLH-FNTFIQNSLINMYAKCGDIKNAQLL 110
Query: 143 FEDIS-----------------------------VERKNLVSWTSIISGFAMHGMGKEAV 173
F+ + + K VS+T++I GF +G +EA+
Sbjct: 111 FDGFATLDSVSCNIMVSGYVRNGQIDNARKLFDVMPNKGCVSYTTMIMGFVQNGFFREAL 170
Query: 174 ENFERMQKVVLKPNRVTFLSVLNACSHGGL------------------------------ 203
E F+ M+ + PN +T ++V++ACSH G
Sbjct: 171 EVFKDMRSCGVVPNDLTLVNVISACSHLGEVLNCRMVHGLVVKMFVVGLVIVSTNLMHAY 230
Query: 204 -----VEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
V E + FD+M E ++ + +++ + G +++A ++ GI + +V+
Sbjct: 231 CLCSGVREARRLFDEMPER-----NLVTWNVMLNGYAKTGLVDEARELFDGICDK--DVI 283
Query: 259 VWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
W T++ G + + R +L + G+G + V++ N+++ R
Sbjct: 284 SWGTMIDGYIQKGRLREALEIYRAML--QTGHGPNEVMIVNLVSACGR 329
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 195/331 (58%), Gaps = 6/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRN-VVSWTGIIDGYTR 60
K LFD + E + V+WN +I G VK GE++ A +LF +MP +N +SWT +I GY +
Sbjct: 161 FKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQ 220
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+ AL LF M P +++ + A Q G + + IH Y K +
Sbjct: 221 AGMNKEALQLFHEMQNSN-VPPDNVSLASALSACSQLGALEQGKWIHSYANKTRTRIDSV 279
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+ LID YAKCG + AL +F+++ K++ WT++ISG+A HG+G+EA+ F MQ
Sbjct: 280 -LCCVLIDMYAKCGEMEEALGVFKNMKT--KSVQVWTALISGYAYHGLGREAISKFLEMQ 336
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ +KPN +TF +VL ACS+ GLVEEG F+ + + + P I+HYGC++D+LGRAG L
Sbjct: 337 NMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLL 396
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
+A + +P + N V+W +LL AC H N+E+GE++ ++EM+ +GG YV M NI
Sbjct: 397 NEANRFIQKMPLK-PNAVIWGSLLKACQIHKNIELGEKIGEILIEMDSNHGGRYVHMANI 455
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ A RR++ E+ +K PG S +
Sbjct: 456 HAMGKKWDKAAETRRLMREQGVVKVPGCSAI 486
>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g37380, chloroplastic; Flags: Precursor
gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
Length = 632
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 121/328 (36%), Positives = 198/328 (60%), Gaps = 5/328 (1%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
K+FD +PER+LV+ MIT K G +E AR+LF+ M R++VSW +IDGY +
Sbjct: 180 AQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFP 239
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
N AL LF++++A +P EIT++A A Q G + + IH + + ++ V
Sbjct: 240 NDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIR-LNVKVCT 298
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV- 183
LID Y+KCG + A+ +F D RK++V+W ++I+G+AMHG ++A+ F MQ +
Sbjct: 299 GLIDMYSKCGSLEEAVLVFND--TPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITG 356
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
L+P +TF+ L AC+H GLV EG++ F+ M +E + P I+HYGCL+ +LGRAG+L++A
Sbjct: 357 LQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRA 416
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
+ + + + V+W ++LG+C HG+ +G+ + ++ + G YVL+ NI A
Sbjct: 417 YETIKNMNMD-ADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYAS 475
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
V Y ++R ++ E+ +K PG S +
Sbjct: 476 VGDYEGVAKVRNLMKEKGIVKEPGISTI 503
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 131/271 (48%), Gaps = 39/271 (14%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G++ ++ +LF + ++ +T I+ + + A L+ ++++ E P+E T
Sbjct: 78 GKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSE-INPNEFT---- 132
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI---- 146
F ++ ++ ++ +LIH + K G +V+ L+D YAK G + SA K+F+ +
Sbjct: 133 FSSLLKSCSTKSGKLIHTHVLKFGL-GIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERS 191
Query: 147 -------------------------SVERKNLVSWTSIISGFAMHGMGKEAVENFER-MQ 180
S+ +++VSW +I G+A HG +A+ F++ +
Sbjct: 192 LVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLA 251
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ KP+ +T ++ L+ACS G +E G ++ V+ + ++K LIDM + G L
Sbjct: 252 EGKPKPDEITVVAALSACSQIGALETG-RWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSL 310
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
E+A V + P + ++V W ++ + HG
Sbjct: 311 EEAVLVFNDTPRK--DIVAWNAMIAGYAMHG 339
>gi|15240355|ref|NP_200988.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171532|sp|Q9FLS9.1|PP441_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61800
gi|10176873|dbj|BAB10080.1| unnamed protein product [Arabidopsis thaliana]
gi|332010136|gb|AED97519.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 499
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 125/323 (38%), Positives = 197/323 (60%), Gaps = 11/323 (3%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFDE P+R++VT+NV+I GLVK E+ AR LF+ MP R++VSW +I GY +MN
Sbjct: 173 QLFDENPQRDVVTYNVLIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCRE 232
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF--NAFHIHVSN 124
A+ LF MVA +P + I++ A Q+GD + + IH Y +++ ++F ++
Sbjct: 233 AIKLFDEMVALGL-KPDNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLFIDSF---LAT 288
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
L+D YAKCG I +A+++FE S K L +W ++I+G AMHG G+ V+ F +M +
Sbjct: 289 GLVDFYAKCGFIDTAMEIFELCS--DKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGI 346
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
KP+ VTF+SVL CSH GLV+E FD+M +V ++KHYGC+ D+LGRAG +E+A
Sbjct: 347 KPDGVTFISVLVGCSHSGLVDEARNLFDQMRSLYDVNREMKHYGCMADLLGRAGLIEEAA 406
Query: 245 KVASGIPSEITN---VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
++ +P + N ++ W LLG C HGN+E+ E+ ++ + GG Y +M +
Sbjct: 407 EMIEQMPKDGGNREKLLAWSGLLGGCRIHGNIEIAEKAANRVKALSPEDGGVYKVMVEMY 466
Query: 302 AGVWRYGDAERLRRVVDERNALK 324
A R+ + ++R ++D +K
Sbjct: 467 ANAERWEEVVKVREIIDRDKKVK 489
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 125/324 (38%), Positives = 191/324 (58%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LF+ + ++ +V+W M+ G K+G LE A LF EMP ++VV W +I G+ + RS A
Sbjct: 313 LFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEA 372
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
LALF M A P +IT++ A Q G + +H Y +K ++ + L+
Sbjct: 373 LALFHEMQASS-VAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLT-MNVALGTALV 430
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D YAKCG I A+++FE++ +N ++WT+II G A+HG A+ F M + L P+
Sbjct: 431 DMYAKCGNIKKAIQVFEEMP--GRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPD 488
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TF+ VL+AC HGGLV++G +F +M + + P +KHY CL+D+LGRAG LE+AE++
Sbjct: 489 EITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELI 548
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P E + VVW L HGNV MGER K+LE++ GG YVL+ N+ +
Sbjct: 549 RSMPFE-PDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIYVLLANMYGDANMW 607
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
A ++R++++ER K PG S +
Sbjct: 608 EQARKVRKMMEERGVEKTPGCSSI 631
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 142/290 (48%), Gaps = 38/290 (13%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ +L N +I LV GEL AR LF+E R++VSW II+GY R ++ A L+ +
Sbjct: 187 DSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYK 246
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M P E+T++ V A Q ++ + +H E+ G N + ++N L+D Y KC
Sbjct: 247 MGELNVM-PDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLN-LTVPLANALMDMYIKC 304
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM------------------------- 168
I +A LFE+++ +K +VSWT+++ G+A G+
Sbjct: 305 KNIEAAKILFENMT--KKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGG 362
Query: 169 ------GKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP 222
KEA+ F MQ + P+++T ++ L+ACS G ++ G+ + V++ +
Sbjct: 363 FVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGI-WMHHYVDKHNLTM 421
Query: 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
++ L+DM + G +++A +V +P N + W ++ + HG
Sbjct: 422 NVALGTALVDMYAKCGNIKKAIQVFEEMPGR--NSLTWTAIICGLALHGQ 469
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 131/288 (45%), Gaps = 25/288 (8%)
Query: 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM------V 75
V + +W L+Y + NV SW I GY A+ L+R M +
Sbjct: 93 VAFCAISEWRNLDYCDKILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAI 152
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
YT P + A F W + I G+ + GF++ + V N +I CG
Sbjct: 153 PDNYTYPLLFKVCAGFSLSWTANE------ILGHVIQLGFDS-DLFVHNAIIHVLVSCGE 205
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ +A KLF++ V ++LVSW SII+G+ G+ EA + + +M ++ + P+ VT + V+
Sbjct: 206 LLAARKLFDESCV--RDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVV 263
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+A + + G K + +EE + + L+DM + +E A+ + + +
Sbjct: 264 SASAQLENLALGRK-LHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKK-- 320
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
VV W T++ + G +E R+ ++ E + V+++N L G
Sbjct: 321 TVVSWTTMVIGYAKFGLLESAVRLFNEMPEKD-------VVLWNALIG 361
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 99/255 (38%), Gaps = 50/255 (19%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+K ++F+E+P RN +TW +I GL G+ A S F EM +V
Sbjct: 439 IKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLV------------ 486
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDV-RNCQLIHGYGEKRGFNAFHI 120
P EIT + V A G V + + K G +
Sbjct: 487 --------------------PDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLK 526
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKEAVENFE 177
H S CL+D + G + A +L + E + V W ++ G +HG MG+ A
Sbjct: 527 HYS-CLVDLLGRAGFLEEAEELIRSMPFE-PDAVVWGALFFGSRIHGNVHMGERAASKL- 583
Query: 178 RMQKVVLKPNR-VTFLSVLNACSHGGLVEEGLKFFDKMVEE--CEVLP---DIKHYGCLI 231
+ L P+ ++ + N + E+ K KM+EE E P I+ G +
Sbjct: 584 ----LELDPHDGGIYVLLANMYGDANMWEQARK-VRKMMEERGVEKTPGCSSIEMNGLVY 638
Query: 232 DMLGRAGRLEQAEKV 246
D + R Q+EK+
Sbjct: 639 DFIIRDKSHPQSEKI 653
>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
Length = 752
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/330 (38%), Positives = 200/330 (60%), Gaps = 6/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + +LFD++P RN+V WN MI V+ ++ A SLF EMP +N +SWT +I+GY RM
Sbjct: 136 IAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRM 195
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ + A L +M +P + T + ++ + +H K G+ A +
Sbjct: 196 GKLDEARQLLNQMP--YRNKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGY-ATDLF 252
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VSN LI YAKCG I SA LF+DI + ++VSW S+I+ +A++G G+EA++ F +M+
Sbjct: 253 VSNALITMYAKCGSISSAELLFKDI--DHFDVVSWNSLIAAYALNGNGREALKLFHKMEV 310
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ P+ VTF+ +L+ACSH GL+++GLK F MV+ + P +HY C++D+LGRAGRLE
Sbjct: 311 EGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLE 370
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++ G+ N +W LLGAC HGN+E+ + K+LE E +YVL+ N+
Sbjct: 371 EAFQLVRGMKIN-ANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQ 429
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ + R+RR++ E+ A K PG S +
Sbjct: 430 AEAGRWDEVARVRRLMKEKGAEKQPGWSWI 459
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 144/306 (47%), Gaps = 20/306 (6%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ +LFD +P ++LV+WN M+TG + GE+ FEEM R+VVSW ++DG+ +
Sbjct: 45 EARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGD 104
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
N + F ++ P+ ++ + + + G + + + R A+
Sbjct: 105 LNSSWEFFEKI-----PNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAW----- 154
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N +I Y + + A+ LF + + KN +SWT++I+G+ G EA + +M
Sbjct: 155 NAMIAAYVQNCHVDEAISLF--MEMPEKNSISWTTVINGYVRMGKLDEARQLLNQM-PYR 211
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
KP++ TF L++C+H ++ G K ++V + D+ LI M + G + A
Sbjct: 212 NKPDQSTFACGLSSCAHLAALQVG-KQLHQLVMKSGYATDLFVSNALITMYAKCGSISSA 270
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME-RGYGGDYVLMYNILA 302
E + I + +VV W +L+ A + +GN G + +ME G D V IL+
Sbjct: 271 ELLFKDI--DHFDVVSWNSLIAAYALNGN---GREALKLFHKMEVEGVAPDEVTFVGILS 325
Query: 303 GVWRYG 308
G
Sbjct: 326 ACSHVG 331
>gi|242066664|ref|XP_002454621.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
gi|241934452|gb|EES07597.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
Length = 496
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 200/325 (61%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD +P R++VT+N M++GL++ G ++ A +F+ MP + VSWT +IDG+ + R +
Sbjct: 128 QLFDTMPVRSVVTYNTMVSGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDE 187
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ FR M+ + EP +T++AV A + G + +H ++G ++ V+N L
Sbjct: 188 AIDCFRAML-LDSVEPDYVTLIAVVSACAEVGALGLGMWVHRLVLRQGLER-NVRVANSL 245
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YA+CG + A ++F S+ ++ +VSW S+I G A +G+ EA+E FE M++ KP
Sbjct: 246 IDMYARCGQVKLAAQVFH--SIRKRTVVSWNSMIVGLAANGLCTEAIELFEEMRRQGFKP 303
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ VT VL ACSH GL E GL+++D M E + ++HYGC++D+LGRAGRL++A V
Sbjct: 304 DAVTLTGVLTACSHAGLTEHGLRYYDLMTTEYGIAARMEHYGCVVDLLGRAGRLDEAMHV 363
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P N VV LL C HG+++M E++ + + E++ G +YVL+ NI A V +
Sbjct: 364 VETMPMR-PNEVVLGALLAGCRMHGDLDMAEQLMQHLFELDPGGDANYVLLSNIYAAVGK 422
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ A ++R ++ R K PG S+V
Sbjct: 423 WDGAGKVRSLMKARGVKKRPGHSIV 447
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 45/309 (14%)
Query: 46 RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTE-PSEITILAVFPAIWQNGDVRNCQ 104
R+VVSWT I R + A A M++ P+++T+L V A + +
Sbjct: 30 RDVVSWTSTIARAARQGDLHAAAASLCAMLSSPAAPAPNDVTLLTVLSACADSPSSPLAR 89
Query: 105 LIHGYGEKRGFNAF--HIHVSNCLIDTYAKCGCIFSALKLFEDISVER------------ 150
+ R F H+ +S CL Y AL+LF+ + V
Sbjct: 90 PLALTLHARALKLFPSHLLLSTCLARFYLASRLPHLALQLFDTMPVRSVVTYNTMVSGLM 149
Query: 151 -----------------KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
+ VSWT++I GF +G EA++ F M ++P+ VT ++
Sbjct: 150 RNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDSVEPDYVTLIA 209
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
V++AC+ G + G+ + ++V + +++ LIDM R G+++ A +V I
Sbjct: 210 VVSACAEVGALGLGM-WVHRLVLRQGLERNVRVANSLIDMYARCGQVKLAAQVFHSIRKR 268
Query: 254 ITNVVVWRTLLGACSFHG----NVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGD 309
VV W +++ + +G +E+ E + R+ G+ D V + +L G
Sbjct: 269 --TVVSWNSMIVGLAANGLCTEAIELFEEMRRQ------GFKPDAVTLTGVLTACSHAGL 320
Query: 310 AERLRRVVD 318
E R D
Sbjct: 321 TEHGLRYYD 329
>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 596
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/336 (39%), Positives = 200/336 (59%), Gaps = 10/336 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKW----GELEYARSLFEEMPC--RNVVSWTGII 55
L++G L E + LV + LV G E A +F+E+P RN+VSW ++
Sbjct: 136 LREGESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVM 195
Query: 56 DGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF 115
+G+ R N L +FR + + P TI++V A + G + + +H + K G
Sbjct: 196 NGFAANGRPNEVLTIFRETLEADLM-PDGFTIVSVLTACAEIGALTLGRRVHVFASKVGL 254
Query: 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
+ HV N LID YAKCG + A K+FE++ V R +VSWTS+I G A +G GK+A+E
Sbjct: 255 VG-NSHVGNALIDLYAKCGGVEDAWKVFEEMGVAR-TVVSWTSLIVGLAGNGFGKDALEL 312
Query: 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
F M++ L P +T + VL ACSH GLV++G ++F++M ++ + P I+H GC++D+LG
Sbjct: 313 FGLMERERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPGIEHLGCMVDLLG 372
Query: 236 RAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV 295
RAGR+E+A + +P E N VVWRTLLGAC+ H +E+GE +++E++ G+ GDYV
Sbjct: 373 RAGRVEEAHNYITTMPVE-PNAVVWRTLLGACAMHKKLELGEAAWARLVELDPGHSGDYV 431
Query: 296 LMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
L+ N+ A V R+ DA LR+ + K PG SLV
Sbjct: 432 LLSNLYAAVGRWADAHVLRKTMATHGVRKNPGHSLV 467
>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 602
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 122/321 (38%), Positives = 193/321 (60%), Gaps = 4/321 (1%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
D +LFDE+ R+++ W M++G +WG++E AR LF+ MP +N V+WT +I GY R +
Sbjct: 236 DARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDL 295
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
+ AL LF +M+A P + T + A + + + IHGY + I VS
Sbjct: 296 GHKALELFTKMMALN-IRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVS 354
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
+ LID Y+KCGC+ +L D+ ++ ++V W +IIS A HG G+EA++ F+ M ++
Sbjct: 355 S-LIDMYSKCGCL-EVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLG 412
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
+KP+R+T + +LNACSH GLV+EGL+ ++ + V+P+ +HY CLID+LGRAG +
Sbjct: 413 MKPDRITLIVLLNACSHSGLVQEGLRLYESITSCHGVIPNQEHYACLIDLLGRAGHFDTL 472
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
+P + N +W LLG C HGN+E G V KI+E++ YVL+ +I A
Sbjct: 473 MNQLEKMPCK-PNDEIWNALLGVCRMHGNIEFGREVAEKIIELDPQSSAAYVLLSSIHAA 531
Query: 304 VWRYGDAERLRRVVDERNALK 324
V R+ E +R++++ER+ K
Sbjct: 532 VGRWELVENVRQLMNERHVRK 552
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 149/296 (50%), Gaps = 37/296 (12%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FDE+ RNL +WN M++G K G+++ AR LF++MP ++VVSW ++ Y + N
Sbjct: 107 KVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCND 166
Query: 67 ALALFR--RMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
AL +R R + Y E S +L + + ++ + HG GF + ++ +S+
Sbjct: 167 ALRFYRELRRLGIGYNEYSFAGLLNICVKV---KELELSKQAHGQVLVAGFLS-NLVISS 222
Query: 125 CLIDTYAKCGCIFSALKLFE---------------------DISVER--------KNLVS 155
++D YAKC + A +LF+ D+ R KN V+
Sbjct: 223 SVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVA 282
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215
WTS+I+G+A H +G +A+E F +M + ++P++ TF S L A + + G + ++
Sbjct: 283 WTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLI 342
Query: 216 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ P+ LIDM + G LE ++ + + +VV+W T++ + + HG
Sbjct: 343 -RTNIRPNTIVVSSLIDMYSKCGCLEVG-RLVFDLMGDKWDVVLWNTIISSLAQHG 396
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 109/221 (49%), Gaps = 27/221 (12%)
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 165
+H + + G + ++N LI+ Y+KCG SA K+F+++S +NL SW ++SG+A
Sbjct: 72 VHLHLKVTGLKRPNTFLANHLINMYSKCGDYPSAYKVFDEMST--RNLYSWNGMLSGYAK 129
Query: 166 HGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIK 225
G K A + F++M + + V++ +++ A + G + L+F+ ++ + +
Sbjct: 130 LGKIKPARKLFDKMP----EKDVVSWNTMVIAYAKSGFCNDALRFYREL-RRLGIGYNEY 184
Query: 226 HYGCLIDMLGRAGRLEQAEKVASG---IPSEITNVVVWRTLLGA---CSFHGNVE--MGE 277
+ L+++ + LE + K A G + ++N+V+ ++L A CS G+ E
Sbjct: 185 SFAGLLNICVKVKELELS-KQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDE 243
Query: 278 RVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVD 318
+ R +L +++G ++GD E R + D
Sbjct: 244 MIIRDVLAWT-----------TMVSGYAQWGDVEAARELFD 273
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/324 (38%), Positives = 196/324 (60%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFD +PE + V+WN +I G VK G+++ A +LF +M +N +SWT +I GY + + + A
Sbjct: 172 LFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEA 231
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LF M + EP +++ A Q G + + IH Y K + + LI
Sbjct: 232 LQLFHEMQNSD-VEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSV-LGCVLI 289
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D YAKCG + AL++F++I ++K++ +WT++ISG+A HG G+EA+ F MQK+ +KPN
Sbjct: 290 DMYAKCGEMEEALEVFKNI--KKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPN 347
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TF +VL ACS+ GLVEEG F M + + P I+HYGC++D+LGRAG L++A++
Sbjct: 348 VITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFI 407
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P + N V+W LL AC H N+E+GE + ++ ++ +GG YV NI A ++
Sbjct: 408 QEMPLK-PNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKW 466
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
A RR++ E+ K PG S +
Sbjct: 467 DKAAETRRLMKEQGVAKVPGCSTI 490
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 137/301 (45%), Gaps = 36/301 (11%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYT- 59
FL +FD + WN+MI G E E + L++ M C + + YT
Sbjct: 64 FLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPH-----NAYTF 118
Query: 60 -RMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF 118
+ ++ L+ F ++IT L ++N LI+ Y F
Sbjct: 119 PSLLKACSNLSAFEETTQIH----AQITKLG-----YENDVYAVNSLINSYAVTGNFKLA 169
Query: 119 HI---------HVS-NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 168
H+ VS N +I Y K G + AL LF ++ KN +SWT++ISG+ M
Sbjct: 170 HLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMA--EKNAISWTTMISGYVQADM 227
Query: 169 GKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG 228
KEA++ F MQ ++P+ V+ + L+AC+ G +E+G K+ + + + D G
Sbjct: 228 NKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQG-KWIHSYLNKTRIRMD-SVLG 285
Query: 229 C-LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME 287
C LIDM + G +E+A +V I + +V W L+ ++HG+ G K +EM+
Sbjct: 286 CVLIDMYAKCGEMEEALEVFKNIKKK--SVQAWTALISGYAYHGH---GREAISKFMEMQ 340
Query: 288 R 288
+
Sbjct: 341 K 341
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 125/324 (38%), Positives = 191/324 (58%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LF+ + ++ +V+W M+ G K+G LE A LF EMP ++VV W +I G+ + RS A
Sbjct: 313 LFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEA 372
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
LALF M A P +IT++ A Q G + +H Y +K ++ + L+
Sbjct: 373 LALFHEMQASS-VAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLT-MNVALGTALV 430
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D YAKCG I A+++FE++ +N ++WT+II G A+HG A+ F M + L P+
Sbjct: 431 DMYAKCGNIKKAIQVFEEMP--GRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPD 488
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TF+ VL+AC HGGLV++G +F +M + + P +KHY CL+D+LGRAG LE+AE++
Sbjct: 489 EITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELI 548
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P E + VVW L HGNV MGER K+LE++ GG YVL+ N+ +
Sbjct: 549 RSMPFE-PDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIYVLLANMYGDANMW 607
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
A ++R++++ER K PG S +
Sbjct: 608 EQARKVRKMMEERGVEKTPGCSSI 631
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 142/290 (48%), Gaps = 38/290 (13%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ +L N +I LV GEL AR LF+E R++VSW II+GY R ++ A L+ +
Sbjct: 187 DSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYK 246
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M P E+T++ V A Q ++ + +H E+ G N + ++N L+D Y KC
Sbjct: 247 MGELNVM-PDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLN-LTVPLANALMDMYIKC 304
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM------------------------- 168
I +A LFE+++ +K +VSWT+++ G+A G+
Sbjct: 305 KNIEAAKILFENMT--KKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGG 362
Query: 169 ------GKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP 222
KEA+ F MQ + P+++T ++ L+ACS G ++ G+ + V++ +
Sbjct: 363 FVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGI-WMHHYVDKHNLTM 421
Query: 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
++ L+DM + G +++A +V +P N + W ++ + HG
Sbjct: 422 NVALGTALVDMYAKCGNIKKAIQVFEEMPGR--NSLTWTAIICGLALHGQ 469
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 130/288 (45%), Gaps = 25/288 (8%)
Query: 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM------V 75
V + +W L+Y + N SW I GY A+ L+R M +
Sbjct: 93 VAFCAISEWRNLDYCDKILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAI 152
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
YT P + A F W + I G+ + GF++ + V N +I CG
Sbjct: 153 PDNYTYPLLFKVCAGFSLSWTANE------ILGHVIQLGFDS-DLFVHNAIIHVLVSCGE 205
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ +A KLF++ V ++LVSW SII+G+ G+ EA + + +M ++ + P+ VT + V+
Sbjct: 206 LLAARKLFDESCV--RDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVV 263
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+A + + G K + +EE + + L+DM + +E A+ + + +
Sbjct: 264 SASAQLENLALGRK-LHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKK-- 320
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
VV W T++ + G +E R+ ++ E + V+++N L G
Sbjct: 321 TVVSWTTMVIGYAKFGLLESAVRLFNEMPEKD-------VVLWNALIG 361
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 99/255 (38%), Gaps = 50/255 (19%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+K ++F+E+P RN +TW +I GL G+ A S F EM +V
Sbjct: 439 IKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLV------------ 486
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDV-RNCQLIHGYGEKRGFNAFHI 120
P EIT + V A G V + + K G +
Sbjct: 487 --------------------PDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLK 526
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKEAVENFE 177
H S CL+D + G + A +L + E + V W ++ G +HG MG+ A
Sbjct: 527 HYS-CLVDLLGRAGFLEEAEELIRSMPFE-PDAVVWGALFFGSRIHGNVHMGERAASKL- 583
Query: 178 RMQKVVLKPNR-VTFLSVLNACSHGGLVEEGLKFFDKMVEE--CEVLP---DIKHYGCLI 231
+ L P+ ++ + N + E+ K KM+EE E P I+ G +
Sbjct: 584 ----LELDPHDGGIYVLLANMYGDANMWEQARK-VRKMMEERGVEKTPGCSSIEMNGLVY 638
Query: 232 DMLGRAGRLEQAEKV 246
D + R Q+EK+
Sbjct: 639 DFIIRDKSHPQSEKI 653
>gi|147771061|emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
Length = 722
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 132/327 (40%), Positives = 200/327 (61%), Gaps = 5/327 (1%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
++F+E+ ++V+W+ ++ V+ GELE AR +F+EMP R+VVSWT ++ GY + RS
Sbjct: 399 AHQVFNEMVGADVVSWSGLVVAHVRAGELELARQVFDEMPERDVVSWTVMVSGYAQAKRS 458
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
AL LFR M P E+ ++ V A GD+ +H Y ++ GF + + + N
Sbjct: 459 REALELFREMRDVG-VRPDEVAMVIVISACTSLGDLETGFEVHRYIDENGF-GWMVSLCN 516
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LID YAKCGC+ A ++F ++ ERK+L++W S+IS A HG ++A F M +
Sbjct: 517 ALIDMYAKCGCMDLAWQVFNNM--ERKSLITWNSMISACANHGNAEDAFRVFTLMLXSGI 574
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
+P+ VTFL++L A +H G V++G F+ M + V ++HYGC++DMLGRAGRLE+A
Sbjct: 575 RPDGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAY 634
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
K+ + + S N VVW LL AC +G+VEMGERV +K++E++ GG Y+L+ +I
Sbjct: 635 KLITSM-SMPCNDVVWGALLAACRIYGDVEMGERVLKKLIELKPDEGGYYILLRDIYVAA 693
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
R +A LRR +D A K G S V
Sbjct: 694 GRRAEAIELRRAMDVNGAKKTLGCSWV 720
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 131/296 (44%), Gaps = 66/296 (22%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G L YA LF ++ N + +I GY++ + + ++ LF +M +P T +
Sbjct: 289 GCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRR-NCVDPDGFTFTFL 347
Query: 91 ----------FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P I + + IHG K GF FH+ V N LI YA G +A
Sbjct: 348 LKGRSRMRIDLPLIVASDE------IHGAVLKLGF-CFHLFVMNALIHLYAARGVPAAAH 400
Query: 141 KLFEDI-----------------------------SVERKNLVSWTSIISGFAMHGMGKE 171
++F ++ + +++VSWT ++SG+A +E
Sbjct: 401 QVFNEMVGADVVSWSGLVVAHVRAGELELARQVFDEMPERDVVSWTVMVSGYAQAKRSRE 460
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL---KFFDK-----MVEECEVLPD 223
A+E F M+ V ++P+ V + V++AC+ G +E G ++ D+ MV C
Sbjct: 461 ALELFREMRDVGVRPDEVAMVIVISACTSLGDLETGFEVHRYIDENGFGWMVSLC----- 515
Query: 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERV 279
LIDM + G ++ A +V + + E +++ W +++ AC+ HGN E RV
Sbjct: 516 ----NALIDMYAKCGCMDLAWQVFNNM--ERKSLITWNSMISACANHGNAEDAFRV 565
>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 634
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 195/325 (60%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+ FD +P +N+V+W M+ L K G ++ AR FE+MP RN++SW +I Y + R
Sbjct: 265 RCFDVMPIKNVVSWTSMLCALAKHGSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPE 324
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
L L+ RM + T P E+T+ V QNGD+ + ++IH Y + F+ + V N L
Sbjct: 325 TLGLYNRMKSLGLT-PDEVTLAGVLSVHGQNGDLASGRMIHCYIQD-SFSDPGVTVLNSL 382
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YA+CG + +++ LF ++ KN +SW II AMHG +EAV F M P
Sbjct: 383 IDMYARCGQVDTSISLFTEMP--NKNTISWNVIIGALAMHGRAQEAVMFFRAMVSDAFSP 440
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +TF+ +L+ACSHGGL+E+G +F M V P+++HY C++D+LGR G L +A +
Sbjct: 441 DEITFVGLLSACSHGGLLEDGQYYFKAMRHIYNVKPEVEHYACMVDLLGRHGHLAKAVDL 500
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P + +VVVW L+GAC HG+VE+G+ +++LE+E GG +VL+ N+L +
Sbjct: 501 IKDMPMK-PDVVVWGALIGACRIHGHVEIGKLAIKQLLELEGINGGLFVLISNLLYETRQ 559
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ D +RLR+++ +R K G S +
Sbjct: 560 WEDMKRLRKLMRDRGTKKDMGVSSI 584
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 129/305 (42%), Gaps = 70/305 (22%)
Query: 2 LKDGSKLFDEL-PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L+D +LF E+ P RN+V+WN MI G + GE A +LF EM
Sbjct: 158 LRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREM----------------- 200
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
R G LA T +++ + G++ +L+H + G I
Sbjct: 201 --RRQGVLA-------------DVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDLI 245
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE--- 177
+ N L+D Y KCG ++ A + F+ + + KN+VSWTS++ A HG A + FE
Sbjct: 246 -LGNALVDMYGKCGDLWMAHRCFDVMPI--KNVVSWTSMLCALAKHGSVDAARDWFEQMP 302
Query: 178 ----------------------------RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
RM+ + L P+ VT VL+ G + G +
Sbjct: 303 ERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASG-R 361
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
+++ P + LIDM R G+++ + + + +P++ N + W ++GA +
Sbjct: 362 MIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMPNK--NTISWNVIIGALAM 419
Query: 270 HGNVE 274
HG +
Sbjct: 420 HGRAQ 424
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 121/259 (46%), Gaps = 6/259 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
LV ++G L +AR +F+ +P + ++ +I Y+ AL L R ++
Sbjct: 40 QLVASYCALSGRAGDVALCHARRMFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDVL 99
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
P+E T+ V A + + HG K G+ + V N L+ + A G
Sbjct: 100 R-RGILPNEFTLPFVLKACSRARAAEHALATHGVAIKLGY-VRQVFVGNALLHSSASAGS 157
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ + +LF +++ R N+VSW ++I G A G EA F M++ + + TF+S+L
Sbjct: 158 LRDSRRLFAEMAPHR-NVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLL 216
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
CS G +E G M+ + D+ L+DM G+ G L A + +P I
Sbjct: 217 LVCSKEGNLEVGRLVHCHMLASGSRV-DLILGNALVDMYGKCGDLWMAHRCFDVMP--IK 273
Query: 256 NVVVWRTLLGACSFHGNVE 274
NVV W ++L A + HG+V+
Sbjct: 274 NVVSWTSMLCALAKHGSVD 292
>gi|242047426|ref|XP_002461459.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
gi|241924836|gb|EER97980.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
Length = 568
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 132/336 (39%), Positives = 201/336 (59%), Gaps = 10/336 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKW----GELEYARSLFEEMPC--RNVVSWTGII 55
L+ G ++ E + L T + LV G E A +F+E+P RN+VSW ++
Sbjct: 134 LRHGERIHAEAAKNGLATLVFVKNSLVHLYGACGLFESAHRVFDEIPVGERNLVSWNSML 193
Query: 56 DGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF 115
+G+ R N L +FR M+ + P T+++V A + G + + +H Y K G
Sbjct: 194 NGFAANGRPNEVLTIFREMLDVNFM-PDGFTVVSVLTASAEIGALALGRRVHVYLTKVGL 252
Query: 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
+ HV N LID YAKCG + A ++FE++ R+ +VSWTS+I G A++G GKEA+E
Sbjct: 253 -VENSHVGNALIDLYAKCGGVEDARRVFEEMGA-RRTVVSWTSLIVGLAVNGFGKEALEL 310
Query: 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
F M++ L P +T + VL ACSH GLV++G +F++M EE + P I+H GC++D+LG
Sbjct: 311 FGIMEREKLVPTEITMVGVLYACSHCGLVDDGFMYFNRMKEEYNIAPRIEHLGCMVDLLG 370
Query: 236 RAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV 295
RAG++++A +P E N VVWRTLLGAC+ H +E+GE +++E++ G+ GDYV
Sbjct: 371 RAGKVKEAYDYILTMPLE-PNAVVWRTLLGACAMHKKLELGEAAWARLVELDPGHSGDYV 429
Query: 296 LMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
L+ N+ A V R+ D LR+ + + K PGRSLV
Sbjct: 430 LLSNLYAAVGRWADVHVLRKTMVKDGVRKNPGRSLV 465
>gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 710
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 190/316 (60%), Gaps = 3/316 (0%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ N+ +WN +I G V+ ++ A LF EMP R+V SW+ +I GYT+ + N AL LF +
Sbjct: 393 KENVASWNALIAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQNEQPNLALELFHK 452
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
MVA +P+E+T+++V AI +G ++ + H Y ++S +ID YAKC
Sbjct: 453 MVASG-IKPNEVTMVSVLSAIATSGTLKEGRWAHEYVHNNSITVSD-NLSAAIIDMYAKC 510
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G I +AL++F +I + + W +II G A+HG +++ F +++ +K N +TF+
Sbjct: 511 GSINNALEVFYEIREKASTVSPWNAIICGLAVHGHANLSLKIFSDLERRHIKLNAITFIG 570
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VL AC H GLVE G + F M E + PDIKHYGC++D+LGRAGRLE+AE++ +P +
Sbjct: 571 VLTACCHVGLVESGKRHFMSMKSEHSIDPDIKHYGCMVDLLGRAGRLEEAEEMIRSMPMK 630
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
+VV+W TLL AC HGNV++GER + +E +G VL+ N+ A ++ DA +
Sbjct: 631 -ADVVIWGTLLAACRTHGNVDVGERAAENLARLEPSHGASRVLLSNMYADAGKWEDAFLV 689
Query: 314 RRVVDERNALKFPGRS 329
RR + + PG S
Sbjct: 690 RRAMQSHRMQRLPGYS 705
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 154/309 (49%), Gaps = 36/309 (11%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + LFDE+PE+N+V+WNVM+ G K G ++ AR +FE +P +++V+W IIDGY R+
Sbjct: 249 LVEARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFERIPNKDLVTWGTIIDGYVRV 308
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R N AL ++R M++ + EP+++ ++ + + + Q + K GF+ +
Sbjct: 309 ERINEALMMYRSMISAGW-EPNDVMMVDLISGCGRTMAMTEGQQLLSAVVKMGFDCYDF- 366
Query: 122 VSNCLIDTYAKCG-------------------------------CIFSALKLFEDISVER 150
+ + +I YA CG I A++LF ++
Sbjct: 367 IQSTIIHLYAACGRINEACLQFRIGSKENVASWNALIAGYVRNRMIDRAMELFNEM--PE 424
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
+++ SW+++ISG+ + A+E F +M +KPN VT +SVL+A + G ++EG ++
Sbjct: 425 RDVFSWSTMISGYTQNEQPNLALELFHKMVASGIKPNEVTMVSVLSAIATSGTLKEG-RW 483
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
+ V + +IDM + G + A +V I + + V W ++ + H
Sbjct: 484 AHEYVHNNSITVSDNLSAAIIDMYAKCGSINNALEVFYEIREKASTVSPWNAIICGLAVH 543
Query: 271 GNVEMGERV 279
G+ + ++
Sbjct: 544 GHANLSLKI 552
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 129/252 (51%), Gaps = 13/252 (5%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L D +FD P + V++NVMI+G VK G+L+YA LF+EMP + VS+T +I G+++
Sbjct: 116 LLVDAKSIFDVCPRSDPVSYNVMISGYVKSGQLDYACELFDEMPVKGCVSYTTMIMGFSQ 175
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
N A+ LF++M P+E+TI + A G + C+++HG K F F +
Sbjct: 176 NECWNQAVELFKQMRNVGVV-PNEVTIATLVSAYSHFGGIWACRMLHGLVIKMLFEEF-V 233
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
VS L+ Y C + A LF+++ KN+VSW +++G++ G A FER+
Sbjct: 234 LVSTNLLRMYCVCSSLVEARALFDEM--PEKNIVSWNVMLNGYSKAGFVDSARVVFERI- 290
Query: 181 KVVLKPNR--VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
PN+ VT+ ++++ + E L + M+ D+ LI GR
Sbjct: 291 -----PNKDLVTWGTIIDGYVRVERINEALMMYRSMISAGWEPNDVMMVD-LISGCGRTM 344
Query: 239 RLEQAEKVASGI 250
+ + +++ S +
Sbjct: 345 AMTEGQQLLSAV 356
>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 657
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 194/325 (59%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+ FD +P +N+VTW M+ K G ++ R FE+MP RN+VSW +I Y + R +
Sbjct: 271 RCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHE 330
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
L L+ RM + T P E T+ V A QNGD+ + ++IH Y + FN + + N L
Sbjct: 331 TLDLYNRMRSLGIT-PDEFTLAGVLSACGQNGDLASGKMIHCY-VRDNFNDPGVTLLNSL 388
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+D YA+CG + +A+ LF ++ KN++SW II AMHG +E V F M P
Sbjct: 389 LDMYARCGQVDTAIGLFTEMP--NKNVISWNVIIGALAMHGRAQETVTFFRTMVSDAFSP 446
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +TF+ +L+ACSHGGL+E G +F+ M V P+++HYGC++D+LGR G L +A +
Sbjct: 447 DEITFVGLLSACSHGGLLEAGEYYFEAMARVYNVEPEVEHYGCMVDLLGRRGHLAKAVNL 506
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ + +VVVW LLGAC HGNVE+G+ V +++LE+E GG +VL+ N+ +
Sbjct: 507 IKDMSIK-PDVVVWGALLGACRIHGNVEIGKLVIKQLLELEGITGGLFVLICNLFYETNQ 565
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ D ++LR+++ E+ K G S +
Sbjct: 566 WEDMKKLRKLMKEQGTKKDMGVSSI 590
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 129/289 (44%), Gaps = 34/289 (11%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
+ + N ++ G L +R F EM RNVVSW +I GY + + A ALF M
Sbjct: 147 QQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEM 206
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
+ T++++ A G++ +L+H + G I + N L+D Y KCG
Sbjct: 207 RH-QGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRI-LGNALLDMYGKCG 264
Query: 135 CIFSALKLFEDISVE-----------------------------RKNLVSWTSIISGFAM 165
++ A + F+ + ++ +N+VSW ++IS +
Sbjct: 265 DLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQ 324
Query: 166 HGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIK 225
G E ++ + RM+ + + P+ T VL+AC G + G K V + P +
Sbjct: 325 CGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASG-KMIHCYVRDNFNDPGVT 383
Query: 226 HYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
L+DM R G+++ A + + +P++ NV+ W ++GA + HG +
Sbjct: 384 LLNSLLDMYARCGQVDTAIGLFTEMPNK--NVISWNVIIGALAMHGRAQ 430
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 116/244 (47%), Gaps = 7/244 (2%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G L +AR LF+ +P + + ++ Y+ + AL L R ++ P+E T+ V
Sbjct: 62 GGLCHARRLFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQ-RGILPNEFTLPFV 120
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A V + HG K GF I V+N L+ +A G + + + F +++
Sbjct: 121 LKACTTVRAVEHALAAHGVVVKLGF-VQQIFVANALLHFHASAGSLRDSRRFFGEMA--D 177
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
+N+VSW ++I G+A G EA F M+ L + T +S+L ACS G +E G
Sbjct: 178 RNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLV 237
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
M+ + I L+DM G+ G L A + +P I NVV W ++L A + H
Sbjct: 238 HCHMLVSGSRVDRILG-NALLDMYGKCGDLWMAHRCFDMMP--IKNVVTWTSMLCAQAKH 294
Query: 271 GNVE 274
G+V+
Sbjct: 295 GSVD 298
>gi|356557876|ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Glycine max]
Length = 912
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 124/321 (38%), Positives = 191/321 (59%), Gaps = 3/321 (0%)
Query: 9 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGAL 68
F+ + +L +WN +++G +K ++ AR +F++MP R+V SW+ +I GY + ++S AL
Sbjct: 591 FEVGAKDHLESWNALVSGFIKNRMVDQARKIFDDMPERDVFSWSTMISGYAQTDQSRIAL 650
Query: 69 ALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLID 128
LF +MVA +P+E+T+++VF AI G ++ + H Y + ++ LID
Sbjct: 651 ELFHKMVA-SGIKPNEVTMVSVFSAIATLGTLKEGRWAHEYICNESI-PLNDNLRAALID 708
Query: 129 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR 188
YAKCG I SAL+ F I + ++ W +II G A HG ++ F MQ+ +KPN
Sbjct: 709 MYAKCGSINSALQFFNQIRDKTFSVSPWNAIICGLASHGHASMCLDVFSDMQRYNIKPNP 768
Query: 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
+TF+ VL+AC H GLVE G + F M V PDIKHYGC++D+LGRAG LE+AE++
Sbjct: 769 ITFIGVLSACCHAGLVEPGRRIFRIMKSAYNVEPDIKHYGCMVDLLGRAGLLEEAEEMIR 828
Query: 249 GIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
+P + ++V+W TLL AC HG+V +GER + + +GG VL+ NI A R+
Sbjct: 829 SMPMK-ADIVIWGTLLAACRTHGDVNIGERAAESLAGLAPSHGGGKVLLSNIYADAGRWE 887
Query: 309 DAERLRRVVDERNALKFPGRS 329
D +RR + + + PG S
Sbjct: 888 DVSLVRRAIQNQRMERMPGCS 908
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 150/303 (49%), Gaps = 36/303 (11%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ +LFD +PE NLV+WNVM+ G K G ++ AR LFE +P ++V+SW +IDGY MNR
Sbjct: 454 EARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGYILMNR 513
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
+ AL ++R M+ +EI ++ + A + + + +HG K+GF+ ++ +
Sbjct: 514 LHEALVMYRAMLRSGLAL-NEILVVNLVSACGRLNAIGDGWQLHGMVVKKGFDCYNF-IQ 571
Query: 124 NCLIDTYAKCG-------------------------------CIFSALKLFEDISVERKN 152
+I YA CG + A K+F+D+ ++
Sbjct: 572 TTIIHFYAACGMMDLACLQFEVGAKDHLESWNALVSGFIKNRMVDQARKIFDDM--PERD 629
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
+ SW+++ISG+A + A+E F +M +KPN VT +SV +A + G ++EG +
Sbjct: 630 VFSWSTMISGYAQTDQSRIALELFHKMVASGIKPNEVTMVSVFSAIATLGTLKEGRWAHE 689
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
+ E L D LIDM + G + A + + I + +V W ++ + HG+
Sbjct: 690 YICNESIPLND-NLRAALIDMYAKCGSINSALQFFNQIRDKTFSVSPWNAIICGLASHGH 748
Query: 273 VEM 275
M
Sbjct: 749 ASM 751
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 96/178 (53%), Gaps = 4/178 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+KD LFD P N ++ N+M+ G K G+L+ AR LF+ MP + VS+T +I G +
Sbjct: 320 IKDAQLLFDACPTLNPISCNIMVCGYAKAGQLDNARKLFDIMPDKGCVSYTTMIMGLVQN 379
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL +F+ M + + P+++T++ V A G++ NC++IH K +
Sbjct: 380 ECFREALEVFKDMRS-DGVVPNDLTLVNVIYACSHFGEILNCRMIHAIAIKLFVEGL-VL 437
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
VS L+ Y C + A +LF+ + NLVSW +++G+A G+ A E FER+
Sbjct: 438 VSTNLMRAYCLCSGVGEARRLFD--RMPEVNLVSWNVMLNGYAKAGLVDMARELFERV 493
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 106/235 (45%), Gaps = 49/235 (20%)
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N ++ YAK G + +A KLF DI + K VS+T++I G + +EA+E F+ M+
Sbjct: 339 NIMVCGYAKAGQLDNARKLF-DI-MPDKGCVSYTTMIMGLVQNECFREALEVFKDMRSDG 396
Query: 184 LKPNRVTFLSVLNACSHGG--------------LVEEGL--------------------- 208
+ PN +T ++V+ ACSH G L EGL
Sbjct: 397 VVPNDLTLVNVIYACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLMRAYCLCSGVGEAR 456
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
+ FD+M E ++ + +++ +AG ++ A ++ +P + +V+ W T++
Sbjct: 457 RLFDRMPEV-----NLVSWNVMLNGYAKAGLVDMARELFERVPDK--DVISWGTMIDGYI 509
Query: 269 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY---GDAERLRRVVDER 320
+ + R +L G + +L+ N+++ R GD +L +V ++
Sbjct: 510 LMNRLHEALVMYRAML--RSGLALNEILVVNLVSACGRLNAIGDGWQLHGMVVKK 562
>gi|359489007|ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 663
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 132/325 (40%), Positives = 200/325 (61%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++F+E+ ++V+W+ ++ V+ GELE AR +F EMP R+VVSWT ++ GY + RS
Sbjct: 342 QVFNEMVGADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSRE 401
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL LFR M P E+ +++V A GD+ +H Y ++ GF + + + N L
Sbjct: 402 ALELFREMRDVG-VRPDEVAMVSVISACTSLGDLETGFEVHRYIDENGFG-WMVSLCNAL 459
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YAKCGC+ A ++F ++ ERK+L++W S+IS A HG ++A F M ++P
Sbjct: 460 IDMYAKCGCMDLAWQVFNNM--ERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRP 517
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ VTFL++L A +H G V++G F+ M + V ++HYGC++DMLGRAGRLE+A K+
Sbjct: 518 DGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKL 577
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ + S N VVW LL AC +G+VEMGERV +K++E++ GG Y+L+ +I R
Sbjct: 578 ITSM-SMPCNDVVWGALLAACRIYGDVEMGERVLKKLIELKPDEGGYYILLRDIYVAAGR 636
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+A LRR +D A K G S V
Sbjct: 637 RAEAIELRRAMDVNGAKKTLGCSWV 661
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 132/296 (44%), Gaps = 66/296 (22%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G L YA LF ++ N + +I GY++ + + ++ LF +M +P T +
Sbjct: 230 GCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRR-NCVDPDGFTFTFL 288
Query: 91 ----------FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P I + + IHG K GF FH+ V N LI YA G +A
Sbjct: 289 LKGRSRMRIDLPLIVASDE------IHGAVLKLGF-CFHLFVMNALIHLYAARGVPAAAH 341
Query: 141 KLFEDI-----------------------------SVERKNLVSWTSIISGFAMHGMGKE 171
++F ++ + +++VSWT ++SG+A +E
Sbjct: 342 QVFNEMVGADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSRE 401
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL---KFFDK-----MVEECEVLPD 223
A+E F M+ V ++P+ V +SV++AC+ G +E G ++ D+ MV C
Sbjct: 402 ALELFREMRDVGVRPDEVAMVSVISACTSLGDLETGFEVHRYIDENGFGWMVSLCNA--- 458
Query: 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERV 279
LIDM + G ++ A +V + + E +++ W +++ AC+ HGN E RV
Sbjct: 459 ------LIDMYAKCGCMDLAWQVFNNM--ERKSLITWNSMISACANHGNAEDAFRV 506
>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 630
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 121/328 (36%), Positives = 198/328 (60%), Gaps = 5/328 (1%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
K+FD +PER+LV+ MIT K G +E AR+LF+ M R++VSW +IDGY++
Sbjct: 178 AQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFP 237
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
+ AL LF++++A +P EIT++A A Q G + + IH + ++ V
Sbjct: 238 SDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIR-LNVKVCT 296
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV- 183
LID Y+KCG + A+ +F D RK++V+W ++I+G+AMHG ++A+ F+ MQ +
Sbjct: 297 ALIDMYSKCGSLEEAVLVFND--TPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITG 354
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
L+P +TF+ L AC+H GLV EG++ F+ M +E + P I+HYGCL+ +LGRAG+L++A
Sbjct: 355 LQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRA 414
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
++ + E + V+W ++LG+C HG +G+ + ++ G YVL+ NI A
Sbjct: 415 YEIIKNMNME-ADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIYVLLSNIYAL 473
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
V Y ++R ++ E+ +K PG S +
Sbjct: 474 VGDYEGVAKVRNLMKEKGIVKEPGISTI 501
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 129/271 (47%), Gaps = 39/271 (14%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G++ ++ +LF + ++ +T I+ + + A L+ ++++ + P+E T
Sbjct: 76 GKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQ-INPNEFT---- 130
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFE------ 144
F +I ++ ++ +LIH + K G +V+ L+D YAK G + SA K+F+
Sbjct: 131 FSSILKSCSTKSGKLIHTHVLKFGL-GLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERS 189
Query: 145 ---------------DISVER--------KNLVSWTSIISGFAMHGMGKEAVENFER-MQ 180
++ R +++VSW +I G++ HG +A+ F++ +
Sbjct: 190 LVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLA 249
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
KP+ +T ++ L+ACS G +E G ++ V + ++K LIDM + G L
Sbjct: 250 DGKPKPDEITVVAALSACSQIGALETG-RWIHVFVNSSRIRLNVKVCTALIDMYSKCGSL 308
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
E+A V + P + ++V W ++ + HG
Sbjct: 309 EEAVLVFNDTPRK--DIVAWNAMITGYAMHG 337
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 37/177 (20%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L++ +F++ P +++V WN MITG G + A LF+EM G T +
Sbjct: 308 LEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEM------------QGITGL 355
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRN-CQLIHGYGEKRGFNAFHI 120
+P++IT + A G V Q+ G++ G I
Sbjct: 356 -------------------QPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKP-KI 395
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKEAVE 174
CL+ + G + A ++ +++++E +++ W+S++ +HG +GKE E
Sbjct: 396 EHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVL-WSSVLGSCKLHGEFMLGKEIAE 451
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 123/330 (37%), Positives = 195/330 (59%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+K LFD++ +R+ V+WN MI G K GE+E A +F MP RN++SWT +I G
Sbjct: 169 IKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGA 228
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ AL LF RM + + +++ A G + + IH Y +K I
Sbjct: 229 GKPKEALNLFHRMQTAG-IKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPI- 286
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LID YAKCG + A+++F + E K + WT++ISG+A+HG G+EA+E F +MQ
Sbjct: 287 LGCVLIDMYAKCGDLEEAIEVFRKM--EEKGVSVWTAMISGYAIHGRGREALEWFMKMQT 344
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++PN++TF +L ACSH GLV E F+ M P I+HYGC++D+LGRAG L+
Sbjct: 345 AGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLK 404
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AE++ +P + N +W LL AC HGN+E+G+++ + +++++ G+GG Y+ + +I
Sbjct: 405 EAEELIENMPVK-PNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIH 463
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + A R+RR + E+ K PG S++
Sbjct: 464 AAAGEWNQAARVRRQMKEQGVSKLPGCSVI 493
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 135/295 (45%), Gaps = 42/295 (14%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+ DE+P L+ + G L YAR++F+ + N W +I GY+ A
Sbjct: 47 ILDEIPASKLLAFCASPNS----GSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEA 102
Query: 68 LALFRRMVACEYTEP-SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
L L+ M+ ++ P + T + A + Q IH + K GF + I+ +N L
Sbjct: 103 LLLYHHMLY--HSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGS-EIYTTNSL 159
Query: 127 IDTYAKCGCIFSALKLFEDIS-----------------------------VERKNLVSWT 157
++ Y+K G I SA LF+ + + +N++SWT
Sbjct: 160 LNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWT 219
Query: 158 SIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE 217
S+ISG G KEA+ F RMQ +K + V +S L AC+ G++++G K+ +++
Sbjct: 220 SMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQG-KWIHAYIKK 278
Query: 218 CEVLPDIKHYGC-LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
E+ D GC LIDM + G LE+A +V + E V VW ++ + HG
Sbjct: 279 HEIEID-PILGCVLIDMYAKCGDLEEAIEVFRKM--EEKGVSVWTAMISGYAIHG 330
>gi|125603908|gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
Length = 567
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/329 (38%), Positives = 201/329 (61%), Gaps = 11/329 (3%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L K+FDE+P RNLV+WN M+ G +++ AR LF+ MP ++VVSWT +I GY +
Sbjct: 241 LLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQ 300
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF---NA 117
R L LFR M +P+E+T+++V A + + +H + +K N
Sbjct: 301 AGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNE 360
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
+++ + LID YAKCG A+K+F S++RKN+ +W ++I+ AM+G +++V+ FE
Sbjct: 361 YNLGAA--LIDMYAKCGRTDIAVKIFN--SLDRKNVSAWNALITRLAMNGNARDSVDAFE 416
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
+M++ KPN +TF+ VL ACSHGGLV+EG + F M C V P++KHYGC++DMLGRA
Sbjct: 417 QMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRA 476
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI--LEMERGYGGDYV 295
G LE+AE++ +P +V+V+ LLGAC H ++ ERV +I L + G +V
Sbjct: 477 GLLEEAEELIRSMPMA-PDVMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHV 535
Query: 296 LMYNILAGVWRYGDAERLRRVVDERNALK 324
L+ +I A ++ D R+VV +R+ ++
Sbjct: 536 LISDIYAAAGKWFDVLEARQVV-QRSGIR 563
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 141/273 (51%), Gaps = 40/273 (14%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
++V+WN +I G VK GE+E A+ +F+EMP RN VSW+ ++ GY + A +F RM
Sbjct: 161 DVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRM- 219
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGE-------KRGFNAFHIH--VS-NC 125
PAI +N N ++ G+ ++ F+ + VS N
Sbjct: 220 ----------------PAIGRNVVTWN-SMVTGFARHGLLPLARKMFDEMPVRNLVSWNA 262
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ-KVVL 184
++ Y+ + A +LF D+ E K++VSWT +ISG+A G ++ +E F MQ + +
Sbjct: 263 MLRGYSVNSDMDGARELF-DVMPE-KDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNV 320
Query: 185 KPNRVTFLSVLNACSHGGLVEEGL---KFFDKMVEECEVLPDIKHYG-CLIDMLGRAGRL 240
+PN VT +SVL+AC++ +EEG F DK VL + + G LIDM + GR
Sbjct: 321 QPNEVTMVSVLSACANLTALEEGRWVHAFIDK---HKMVLNNEYNLGAALIDMYAKCGRT 377
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
+ A K+ + + + NV W L+ + +GN
Sbjct: 378 DIAVKIFNSL--DRKNVSAWNALITRLAMNGNA 408
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 98/214 (45%), Gaps = 47/214 (21%)
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N +I Y KCG + SA ++F+++ R+N VSW++++ G+A G A E F+RM +
Sbjct: 166 NTVIGGYVKCGEMESAKRVFDEM--PRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAI- 222
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV------------------------EECE 219
N VT+ S++ + GL+ K FD+M E +
Sbjct: 223 -GRNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFD 281
Query: 220 VLP--DIKHYGCLIDMLGRAGRLE------QAEKVASGI-PSEITNVVVWRTLLGACSFH 270
V+P D+ + C+I +AGR + +A + S + P+E+T V ++L AC+
Sbjct: 282 VMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMV----SVLSACANL 337
Query: 271 GNVEMGERV------TRKILEMERGYGGDYVLMY 298
+E G V + +L E G + MY
Sbjct: 338 TALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMY 371
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 123/330 (37%), Positives = 195/330 (59%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+K LFD++ +R+ V+WN MI G K GE+E A +F MP RN++SWT +I G
Sbjct: 169 IKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGA 228
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ AL LF RM + + +++ A G + + IH Y +K I
Sbjct: 229 GKPKEALNLFHRMQTAG-IKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPI- 286
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LID YAKCG + A+++F + E K + WT++ISG+A+HG G+EA+E F +MQ
Sbjct: 287 LGCVLIDMYAKCGDLEEAIEVFRKM--EEKGVSVWTAMISGYAIHGRGREALEWFMKMQT 344
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++PN++TF +L ACSH GLV E F+ M P I+HYGC++D+LGRAG L+
Sbjct: 345 AGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLK 404
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AE++ +P + N +W LL AC HGN+E+G+++ + +++++ G+GG Y+ + +I
Sbjct: 405 EAEELIENMPVK-PNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIH 463
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + A R+RR + E+ K PG S++
Sbjct: 464 AAAGEWNQAARVRRQMKEQGVSKLPGCSVI 493
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 136/299 (45%), Gaps = 50/299 (16%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+ DE+P L+ + G L YAR++F+ + N W +I GY+ A
Sbjct: 47 ILDEIPASKLLAFCASPNS----GSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEA 102
Query: 68 LALFRRMV----------------ACEYTEPSE------------------ITILAVFPA 93
L L+ M+ AC SE T ++
Sbjct: 103 LLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNV 162
Query: 94 IWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 153
++GD+++ +L+ ++R ++ N +ID Y KCG I A ++F + +N+
Sbjct: 163 YSKSGDIKSARLLFDQVDQRDTVSW-----NSMIDGYTKCGEIEMAYEIFNHMP--ERNI 215
Query: 154 VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDK 213
+SWTS+ISG G KEA+ F RMQ +K + V +S L AC+ G++++G K+
Sbjct: 216 ISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQG-KWIHA 274
Query: 214 MVEECEVLPDIKHYGC-LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+++ E+ D GC LIDM + G LE+A +V + E V VW ++ + HG
Sbjct: 275 YIKKHEIEID-PILGCVLIDMYAKCGDLEEAIEVFRKM--EEKGVSVWTAMISGYAIHG 330
>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 642
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 194/331 (58%), Gaps = 7/331 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ FD +P +N+++W +M+ G +K G+ AR LF++MP +N+V+W+ +I GY R
Sbjct: 276 LESAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARN 335
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQ-LIHGYGEKRGFNAFHI 120
+ AL LF R + +P E IL + A Q G + + +IH Y + +
Sbjct: 336 GQPLKALELFERFKEQD-IKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRV 394
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
S LID YAKCG I AL++FE K+L+ ++++I+ A HG+G++A+ F++MQ
Sbjct: 395 FTS--LIDMYAKCGSIEKALQMFE--MAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQ 450
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ +KP+ VTFL VL AC+HGGLV+EG K+F +M EE + P KHY C++D+LGR G L
Sbjct: 451 RANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCL 510
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+A + +P + VVW LL AC H NV++ E ++ ++E G+Y+L+ NI
Sbjct: 511 EEAYNLIRNMPIA-PHSVVWGALLAACRVHCNVQLAEVAAAELFKIEPDNSGNYILLSNI 569
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+G ++R + E K G S +
Sbjct: 570 YAAAGRWGSVAKVRAKIREHRVRKNRGSSWI 600
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 140/291 (48%), Gaps = 36/291 (12%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+ FDE+ E+++V+WN+MI+G ++ AR F+ MP RNVVSWT +I GY +
Sbjct: 157 QAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAE 216
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS--- 123
A LF M + + + GD N ++I G +++I +S
Sbjct: 217 AQVLFDSMPVKDLASWN-----VMVSGYMDIGDCVNARIIFGKMPIHDTGSWNIMISGFC 271
Query: 124 -----------------------NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 160
++D Y K G A LF+ + + KNLV+W+++I
Sbjct: 272 KAGELESAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQMPM--KNLVTWSTMI 329
Query: 161 SGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEV 220
G+A +G +A+E FER ++ +KP+ L +++ACS G+++ V +
Sbjct: 330 GGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGP-SL 388
Query: 221 LPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
L D++ + LIDM + G +E+A ++ + +++ + T++ A + HG
Sbjct: 389 LSDLRVFTSLIDMYAKCGSIEKALQMFE--MAHPKDLLCYSTMIAALANHG 437
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 121/265 (45%), Gaps = 42/265 (15%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEI--- 85
++G +YA +F+E+ N WT +I GY + + A +LF +M EP +
Sbjct: 47 RFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQM----RREPISVLNF 102
Query: 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFED 145
TI +V A+ + + Q ++G+ K GF AF + V N ++D + +C + +A + F++
Sbjct: 103 TISSVLKALARLTRFKGGQAVYGFVLKYGF-AFDLIVQNSVLDLFMRCRKVDTARQAFDE 161
Query: 146 ISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVE 205
+ K++VSW +ISG+ + A + F+RM + N V++ S++ G +
Sbjct: 162 MC--EKDIVSWNMMISGYGNNDRVDIARKFFDRMP----ERNVVSWTSMICGYVKAGDMA 215
Query: 206 EGLKFFDKM-----------------VEEC---------EVLPDIKHYGCLIDMLGRAGR 239
E FD M + +C + D + +I +AG
Sbjct: 216 EAQVLFDSMPVKDLASWNVMVSGYMDIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGE 275
Query: 240 LEQAEKVASGIPSEITNVVVWRTLL 264
LE A+ +P++ NV+ W +L
Sbjct: 276 LESAKDFFDRMPNK--NVISWGIML 298
>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
Length = 539
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 131/351 (37%), Positives = 205/351 (58%), Gaps = 23/351 (6%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRN----VVSWTGIID 56
+ + SK+FD + E+++V+WN M+ G + G E A LFE+M N VVSW+ +I
Sbjct: 63 MVDEASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIA 122
Query: 57 GYTR---------------MNRSNGALALFRRMVACE-YTEPSEITILAVFPAIWQNGDV 100
+ + +N AL LF M + +P+ TI A + +
Sbjct: 123 AFAQRGLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAAL 182
Query: 101 RNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 160
R + IH Y + F++ ++V+NCLID YAK G I A +F+++ ++KN VSWTS++
Sbjct: 183 RLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNL--KQKNFVSWTSLM 240
Query: 161 SGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEV 220
+G+ MHG GKEA+E F+ M++V L+P+ VT L VL ACSH G++++G++FF+ M +E V
Sbjct: 241 TGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGV 300
Query: 221 LPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVT 280
+P +HY C++D+LGRAGRL +A ++ G+ E ++ +VW LL C H NVE+GE
Sbjct: 301 IPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSS-IVWVALLSGCRIHANVELGEHAA 359
Query: 281 RKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+++LE+ G Y L+ NI A R+ D R+R ++ K PG S V
Sbjct: 360 KQLLELNSENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWV 410
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 79/134 (58%), Gaps = 5/134 (3%)
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH-IHVSNCLIDTYAKCGCIFSAL 140
P ++++ V PA G + + +HG + G +F + V N L+D YAKCG + A
Sbjct: 11 PDVVSLVNVLPACASMGAWLHGKAVHGIAVRSG--SFEDLFVGNALVDMYAKCGMVDEAS 68
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
K+F+ I + K++VSW ++++G++ G ++A+ FE+M++ ++ N V++ +V+ A +
Sbjct: 69 KVFDRI--KEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQ 126
Query: 201 GGLVEEGLKFFDKM 214
GL E L F +M
Sbjct: 127 RGLGCETLDVFREM 140
>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Glycine max]
Length = 1116
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 199/327 (60%), Gaps = 5/327 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+ FDE+ + +L +WN +I K G + AR LF++MP +NV+SW+ +I GY
Sbjct: 116 QAFDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKA 175
Query: 67 ALALFRRMVACEYTE--PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
AL+LFR + E ++ P+E T+ +V A + G +++ + +H Y +K G + +
Sbjct: 176 ALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMK-IDVVLGT 234
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LID YAKCG I A +F+++ E K++++W+++I+ F+MHG+ +E +E F RM +
Sbjct: 235 SLIDMYAKCGSIERAKCIFDNLGPE-KDVMAWSAMITAFSMHGLSEECLELFARMVNDGV 293
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
+PN VTF++VL AC HGGLV EG ++F +M+ E V P I+HYGC++D+ RAGR+E A
Sbjct: 294 RPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAW 353
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
V +P E +V++W LL HG+VE E K+LE++ YVL+ N+ A +
Sbjct: 354 NVVKSMPME-PDVMIWGALLNGARIHGDVETCEIAITKLLELDPANSSAYVLLSNVYAKL 412
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
R+ + LR +++ R K PG SLV
Sbjct: 413 GRWREVRHLRDLMEVRGIKKLPGCSLV 439
>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
Length = 1130
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 197/327 (60%), Gaps = 5/327 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FDE+P+ +L +WN +I + G ++ AR+LF MP RNV+SW+ +I+GY R +
Sbjct: 120 QVFDEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKE 179
Query: 67 ALALFR--RMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
ALALFR +M+ P+E T+ V A + G + + + H Y +K G + +
Sbjct: 180 ALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPV-DVVLGT 238
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LID YAKCG + A +F ++ K++++W+++ISG AMHG+ +E V F +M +
Sbjct: 239 ALIDMYAKCGSVEKATWVFSNLG-PNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGV 297
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
+PN VTFL+V AC HGGLV EG + +M E+ ++P I+HYGC++D+ GRAGR+++A
Sbjct: 298 RPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAW 357
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
V +P E +V+VW LL HG++E E +K++E+E G YVL+ N+ A
Sbjct: 358 NVVKSMPME-PDVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKR 416
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
R+ D +R +++ K PG SL+
Sbjct: 417 GRWEDVRHVRDLMETMGIKKVPGCSLI 443
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/323 (39%), Positives = 197/323 (60%), Gaps = 17/323 (5%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
R + N +IT K G L+ AR LF ++P R+VV+WT ++ GY ++ + A+ LFRRM
Sbjct: 331 REIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRM 390
Query: 75 VACEYTEPSEITILAVF-----PAIWQNGDVRNCQLIH-GYGEKRGFNAFHIHVSNCLID 128
+ +P ++T + PA Q G + QL+H GY + +++ + L+
Sbjct: 391 QQ-QGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGY-------SLDVYLQSALVS 442
Query: 129 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR 188
YAKCG + A +F +S +N+V+WT++I+G A HG +EA+E FE+M+K +KP++
Sbjct: 443 MYAKCGSMDDARLVFNQMS--ERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDK 500
Query: 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
VTF SVL+AC+H GLVEEG K F M + + P ++HY C +D+LGRAG LE+AE V
Sbjct: 501 VTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVIL 560
Query: 249 GIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
+P + VW LL AC H +VE GER +L+++ G YV + NI A RY
Sbjct: 561 TMPFQ-PGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYE 619
Query: 309 DAERLRRVVDERNALKFPGRSLV 331
DAE++R+V+++R+ +K PG+S +
Sbjct: 620 DAEKVRQVMEKRDVVKEPGQSWI 642
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 148/317 (46%), Gaps = 58/317 (18%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP----CRNVVSWTGIIDGYTRMNR 63
+FD+LPE+N+VTW ++I G + G+++ A L E+M N +++T I+ G T
Sbjct: 254 IFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTT--- 310
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
P ++G + +H Y + G+ I V
Sbjct: 311 ----------------------------PLALEHG-----KKVHRYIIQSGYGR-EIWVV 336
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N LI Y KCG + A KLF D+ +++V+WT++++G+A G EA++ F RMQ+
Sbjct: 337 NALITMYCKCGGLKEARKLFGDLP--HRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQG 394
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
+KP+++TF S L +CS ++EG ++V L D+ L+ M + G ++ A
Sbjct: 395 IKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSL-DVYLQSALVSMYAKCGSMDDA 453
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM-----ERGYGGDYVLMY 298
V + + NVV W ++ C+ HG R+ LE ++G D V
Sbjct: 454 RLVFNQMSER--NVVAWTAMITGCAQHGRC-------REALEYFEQMKKQGIKPDKVTFT 504
Query: 299 NILAGVWRYGDAERLRR 315
++L+ G E R+
Sbjct: 505 SVLSACTHVGLVEEGRK 521
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 126/254 (49%), Gaps = 13/254 (5%)
Query: 13 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFR 72
P R L N +++ K G L AR +F+ + RN+VSWT +I+ + N++ A +
Sbjct: 129 PNRYL--ENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYE 186
Query: 73 RM--VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTY 130
M C+ P ++T +++ A ++ Q +H K G V L+ Y
Sbjct: 187 TMKLAGCK---PDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLE-LEPRVGTSLVGMY 242
Query: 131 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVT 190
AKCG I A +F+ + KN+V+WT +I+G+A G A+E E+MQ+ + PN++T
Sbjct: 243 AKCGDISKAQVIFDKLP--EKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKIT 300
Query: 191 FLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI 250
+ S+L C+ +E G K +++ +I LI M + G L++A K+ +
Sbjct: 301 YTSILQGCTTPLALEHGKKVHRYIIQS-GYGREIWVVNALITMYCKCGGLKEARKLFGDL 359
Query: 251 PSEITNVVVWRTLL 264
P +VV W ++
Sbjct: 360 PHR--DVVTWTAMV 371
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 91/168 (54%), Gaps = 7/168 (4%)
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
++ N L+ YAKCG + A ++F+ I +N+VSWT++I F EA + +E M+
Sbjct: 132 YLENTLLSMYAKCGSLTDARRVFDGI--RDRNIVSWTAMIEAFVAGNQNLEAYKCYETMK 189
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE-CEVLPDIKHYGCLIDMLGRAGR 239
KP++VTF+S+LNA ++ L++ G K ++ + E+ P + L+ M + G
Sbjct: 190 LAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVG--TSLVGMYAKCGD 247
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME 287
+ +A+ + +P + NVV W L+ + G V++ + K+ + E
Sbjct: 248 ISKAQVIFDKLPEK--NVVTWTLLIAGYAQQGQVDVALELLEKMQQAE 293
>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Glycine max]
Length = 581
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 125/330 (37%), Positives = 195/330 (59%), Gaps = 2/330 (0%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + +LF +PER++ +WN MITG ++ GEL A LF EM +NV++WT ++ GY +
Sbjct: 204 LDEALQLFQRMPERDMPSWNTMITGFIQNGELNRAEKLFGEMQEKNVITWTAMMTGYVQH 263
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
S AL +F +M+A +P+ T + V A + Q IH K F
Sbjct: 264 GLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTEGQQIHQMISKTVFQDSTCV 323
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VS LI+ Y+KCG + +A K+F+D + +++L+SW +I+ +A HG GKEA+ F MQ+
Sbjct: 324 VS-ALINMYSKCGELHTARKMFDDGLLSQRDLISWNGMIAAYAHHGYGKEAINLFNEMQE 382
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ + N VTF+ +L ACSH GLVEEG K+FD++++ + HY CL+D+ GRAGRL+
Sbjct: 383 LGVCANDVTFVGLLTACSHTGLVEEGFKYFDEILKNRSIQLREDHYACLVDLCGRAGRLK 442
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + G+ E+ + VW LL C+ HGN ++G+ V KIL++E G Y L+ N+
Sbjct: 443 EASNIIEGLGEEVP-LTVWGALLAGCNVHGNADIGKLVAEKILKIEPQNAGTYSLLSNMY 501
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A V ++ +A +R + + K PG S +
Sbjct: 502 ASVGKWKEAANVRMRMKDMGLKKQPGCSWI 531
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 139/272 (51%), Gaps = 47/272 (17%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D +LFD++ +R++V+W M+ GL K G +E AR+LF++MP RNVVSW +I GY +
Sbjct: 142 IEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMPVRNVVSWNAMITGYAQN 201
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R + AL LF+RM E PS W
Sbjct: 202 RRLDEALQLFQRMP--ERDMPS-----------W-------------------------- 222
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
N +I + + G + A KLF ++ + KN+++WT++++G+ HG+ +EA+ F +M
Sbjct: 223 --NTMITGFIQNGELNRAEKLFGEM--QEKNVITWTAMMTGYVQHGLSEEALRVFIKMLA 278
Query: 182 V-VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
LKPN TF++VL ACS + EG + +M+ + LI+M + G L
Sbjct: 279 TNELKPNTGTFVTVLGACSDLAGLTEGQQIH-QMISKTVFQDSTCVVSALINMYSKCGEL 337
Query: 241 EQAEKV-ASGIPSEITNVVVWRTLLGACSFHG 271
A K+ G+ S+ +++ W ++ A + HG
Sbjct: 338 HTARKMFDDGLLSQ-RDLISWNGMIAAYAHHG 368
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 136/290 (46%), Gaps = 43/290 (14%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N+ I+ L + GE++YAR +FEEMP R++ WT +I GY + A LF R A
Sbjct: 5 NLFISRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRWDA---- 60
Query: 81 EPSEITILAVFPAIWQNGDVRNCQ----------------LIHGYGE----KRGFNAF-- 118
+ + +T A+ + V+ + ++ GY ++ + F
Sbjct: 61 KKNVVTWTAMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRR 120
Query: 119 ----HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVE 174
++ N +I +CG I A +LF+ + + +++VSWT++++G A +G ++A
Sbjct: 121 MPERNVVSWNTIITALVQCGRIEDAQRLFDQM--KDRDVVSWTTMVAGLAKNGRVEDARA 178
Query: 175 NFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDML 234
F++M N V++ +++ + ++E L+ F +M E D+ + +I
Sbjct: 179 LFDQMP----VRNVVSWNAMITGYAQNRRLDEALQLFQRMPER-----DMPSWNTMITGF 229
Query: 235 GRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKIL 284
+ G L +AEK+ + + NV+ W ++ HG E RV K+L
Sbjct: 230 IQNGELNRAEKLFGEMQEK--NVITWTAMMTGYVQHGLSEEALRVFIKML 277
>gi|125562063|gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
Length = 567
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/329 (38%), Positives = 201/329 (61%), Gaps = 11/329 (3%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L K+FDE+P RNLV+WN M+ G +++ AR LF+ MP ++VVSWT +I GY +
Sbjct: 241 LLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQ 300
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF---NA 117
R L LFR M +P+E+T+++V A + + +H + +K N
Sbjct: 301 AGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNE 360
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
+++ + LID YAKCG A+K+F S++RKN+ +W ++I+ AM+G +++V+ FE
Sbjct: 361 YNLGAA--LIDMYAKCGRTDIAVKIFN--SLDRKNVSAWNALITRLAMNGNAQDSVDAFE 416
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
+M++ KPN +TF+ VL ACSHGGLV+EG + F M C V P++KHYGC++DMLGRA
Sbjct: 417 QMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRA 476
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI--LEMERGYGGDYV 295
G LE+AE++ +P +V+V+ LLGAC H ++ ERV +I L + G +V
Sbjct: 477 GLLEEAEELIRSMPMA-PDVMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHV 535
Query: 296 LMYNILAGVWRYGDAERLRRVVDERNALK 324
L+ +I A ++ D R+VV +R+ ++
Sbjct: 536 LISDIYAAAGKWFDVLEARQVV-QRSGIR 563
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 141/274 (51%), Gaps = 40/274 (14%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
++V+WN +I G VK GE+E A+ +F+EMP RN VSW+ ++ GY + A +F RM
Sbjct: 161 DVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRM- 219
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGE-------KRGFNAFHIH--VS-NC 125
PAI +N N ++ G+ ++ F+ + VS N
Sbjct: 220 ----------------PAIGRNVVTWN-SMVTGFARHGLLPLARKMFDEMPVRNLVSWNA 262
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ-KVVL 184
++ Y+ + A +LF+ + K++VSWT +ISG+A G ++ +E F MQ + +
Sbjct: 263 MLRGYSVNSDMDGARELFD--VMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNV 320
Query: 185 KPNRVTFLSVLNACSHGGLVEEGL---KFFDKMVEECEVLPDIKHYG-CLIDMLGRAGRL 240
+PN VT +SVL+AC++ +EEG F DK VL + + G LIDM + GR
Sbjct: 321 QPNEVTMVSVLSACANLTALEEGRWVHAFIDK---HKMVLNNEYNLGAALIDMYAKCGRT 377
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
+ A K+ + + + NV W L+ + +GN +
Sbjct: 378 DIAVKIFNSL--DRKNVSAWNALITRLAMNGNAQ 409
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 98/214 (45%), Gaps = 47/214 (21%)
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N +I Y KCG + SA ++F+++ R+N VSW++++ G+A G A E F+RM +
Sbjct: 166 NTVIGGYVKCGEMESAKRVFDEM--PRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAI- 222
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV------------------------EECE 219
N VT+ S++ + GL+ K FD+M E +
Sbjct: 223 -GRNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFD 281
Query: 220 VLP--DIKHYGCLIDMLGRAGRLE------QAEKVASGI-PSEITNVVVWRTLLGACSFH 270
V+P D+ + C+I +AGR + +A + S + P+E+T V ++L AC+
Sbjct: 282 VMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMV----SVLSACANL 337
Query: 271 GNVEMGERV------TRKILEMERGYGGDYVLMY 298
+E G V + +L E G + MY
Sbjct: 338 TALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMY 371
>gi|326526103|dbj|BAJ93228.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 126/324 (38%), Positives = 198/324 (61%), Gaps = 4/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LF +PER++ +WN+MITG ++ +L+ A+ LF+EMP RNVVSWT +++G + N S A
Sbjct: 248 LFMNMPERDVASWNIMITGFIQNKDLKKAQELFDEMPKRNVVSWTTMMNGCLQGNESEMA 307
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L +F M+ + P+++T L A + Q +H K F F + + L+
Sbjct: 308 LQVFNGML-VDGIRPNQVTFLGAVDAGSNLAGLSEGQQVHQMICKTPFQ-FDNFIESSLM 365
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
YAKCG I A K+F D+S E K+++SW +I+ +A HG G EA+ +E+MQ+ KPN
Sbjct: 366 KLYAKCGEIRLARKVF-DLSGE-KDVISWNGMIAAYAHHGAGVEAIALYEKMQENRYKPN 423
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
VT++ +L+ACSH GLV+EGL+ F+ M ++ + +HY CLID+ RAGRL+ A+++
Sbjct: 424 DVTYVGLLSACSHSGLVDEGLRIFEYMAKDKSIAVRDEHYSCLIDLCSRAGRLDDAKRLI 483
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+G+ + T+ VW LLG C+ HGN +G+ R +LE E G Y L+ NI A ++
Sbjct: 484 NGLKLKPTSSTVWSALLGGCNAHGNESIGDLAARNLLEAEPDNAGTYTLLSNIYASAGKW 543
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
+A ++R +++R K PG S +
Sbjct: 544 KEAAKIRSEMNDRGLKKQPGCSWI 567
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 134/284 (47%), Gaps = 24/284 (8%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC-RNVVSWTGIIDGYTR 60
+ D +LFD P+R++V+W M+ + G+L A +L RNVV+WT ++ GY R
Sbjct: 55 VPDARRLFDRTPDRDVVSWTAMVAAYARQGQLHEASALLHRPDARRNVVTWTALLSGYAR 114
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
R + A ALF RM E S T+L + + + G C L G + +
Sbjct: 115 ARRVDEARALFDRM--PERNVVSWNTMLEAYASAGRMGAA--CALFDGMPVRDAGSW--- 167
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
N L+ + G + A +LFE + +N++SWT++ISG A G EA F+ M
Sbjct: 168 ---NILLAALVRSGTMDEARRLFE--RMPERNVMSWTTMISGLARSGSADEARALFDGMP 222
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ N V++ ++++ + ++E L F M E D+ + +I + L
Sbjct: 223 ----ERNVVSWNAMISGYARNLRIDEALDLFMNMPER-----DVASWNIMITGFIQNKDL 273
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKIL 284
++A+++ +P NVV W T++ C EM +V +L
Sbjct: 274 KKAQELFDEMPKR--NVVSWTTMMNGCLQGNESEMALQVFNGML 315
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 126/270 (46%), Gaps = 46/270 (17%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + +LF+ +PERN+++W MI+GL + G + AR+LF+ MP RNVVSW +I GY R
Sbjct: 180 MDEARRLFERMPERNVMSWTTMISGLARSGSADEARALFDGMPERNVVSWNAMISGYARN 239
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R + AL LF M E + + QN D++ Q
Sbjct: 240 LRIDEALDLFMNM-----PERDVASWNIMITGFIQNKDLKKAQ----------------- 277
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+LF+++ ++N+VSWT++++G + A++ F M
Sbjct: 278 -------------------ELFDEMP--KRNVVSWTTMMNGCLQGNESEMALQVFNGMLV 316
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++PN+VTFL ++A S+ + EG + +M+ + D L+ + + G +
Sbjct: 317 DGIRPNQVTFLGAVDAGSNLAGLSEGQQVH-QMICKTPFQFDNFIESSLMKLYAKCGEIR 375
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHG 271
A KV S +V+ W ++ A + HG
Sbjct: 376 LARKVFD--LSGEKDVISWNGMIAAYAHHG 403
>gi|296082950|emb|CBI22251.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 132/325 (40%), Positives = 200/325 (61%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++F+E+ ++V+W+ ++ V+ GELE AR +F EMP R+VVSWT ++ GY + RS
Sbjct: 155 QVFNEMVGADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSRE 214
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL LFR M P E+ +++V A GD+ +H Y ++ GF + + + N L
Sbjct: 215 ALELFREMRDVG-VRPDEVAMVSVISACTSLGDLETGFEVHRYIDENGFG-WMVSLCNAL 272
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YAKCGC+ A ++F ++ ERK+L++W S+IS A HG ++A F M ++P
Sbjct: 273 IDMYAKCGCMDLAWQVFNNM--ERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRP 330
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ VTFL++L A +H G V++G F+ M + V ++HYGC++DMLGRAGRLE+A K+
Sbjct: 331 DGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKL 390
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ + S N VVW LL AC +G+VEMGERV +K++E++ GG Y+L+ +I R
Sbjct: 391 ITSM-SMPCNDVVWGALLAACRIYGDVEMGERVLKKLIELKPDEGGYYILLRDIYVAAGR 449
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+A LRR +D A K G S V
Sbjct: 450 RAEAIELRRAMDVNGAKKTLGCSWV 474
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 132/301 (43%), Gaps = 66/301 (21%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G L YA LF ++ N + +I GY++ + + ++ LF +M +P T +
Sbjct: 43 GCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRR-NCVDPDGFTFTFL 101
Query: 91 ----------FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P I + + IHG K GF FH+ V N LI YA G +A
Sbjct: 102 LKGRSRMRIDLPLIVASDE------IHGAVLKLGF-CFHLFVMNALIHLYAARGVPAAAH 154
Query: 141 KLFEDI-----------------------------SVERKNLVSWTSIISGFAMHGMGKE 171
++F ++ + +++VSWT ++SG+A +E
Sbjct: 155 QVFNEMVGADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSRE 214
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF--------FDKMVEECEVLPD 223
A+E F M+ V ++P+ V +SV++AC+ G +E G + F MV C
Sbjct: 215 ALELFREMRDVGVRPDEVAMVSVISACTSLGDLETGFEVHRYIDENGFGWMVSLCNA--- 271
Query: 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
LIDM + G ++ A +V + + E +++ W +++ AC+ HGN E RV +
Sbjct: 272 ------LIDMYAKCGCMDLAWQVFNNM--ERKSLITWNSMISACANHGNAEDAFRVFTLM 323
Query: 284 L 284
L
Sbjct: 324 L 324
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 192/301 (63%), Gaps = 5/301 (1%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G+ E A +FE M R++V+W +I+G+ R N AL LFR M + E EP T++++
Sbjct: 167 GDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREM-SVEGVEPDGFTVVSL 225
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A + G + + +H Y K G + + HV+N L+D YAKCG I A ++F ++S
Sbjct: 226 LSASAELGALELGRRVHVYLLKVGLSK-NSHVTNSLLDLYAKCGAIREAQRVFSEMS--E 282
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
+N VSWTS+I G A++G G+EA+E F+ M+ L P+ +TF+ VL ACSH G+++EG ++
Sbjct: 283 RNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEY 342
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
F +M EEC ++P I+HYGC++D+L RAG ++QA + +P + N V+WRTLLGAC+ H
Sbjct: 343 FRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQ-PNAVIWRTLLGACTIH 401
Query: 271 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSL 330
G++ +GE +L +E + GDYVL+ N+ A R+ D + +RR + + K PG SL
Sbjct: 402 GHLGLGEIARSHLLNLEPKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSL 461
Query: 331 V 331
V
Sbjct: 462 V 462
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 131/258 (50%), Gaps = 12/258 (4%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM-VACEYTEPSEITILA 89
+ YA ++F + NV +W II GY + + A +R+M V+C EP T
Sbjct: 66 APMSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSC--VEPDTHTYPF 123
Query: 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE 149
+ AI ++ +VR + IH + GF + + V N L+ YA CG SA K+FE ++
Sbjct: 124 LLKAISKSLNVREGEAIHSVTIRNGFESL-VFVQNSLLHIYAACGDTESAYKVFE--LMK 180
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
++LV+W S+I+GFA++G EA+ F M ++P+ T +S+L+A + G +E G +
Sbjct: 181 ERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRR 240
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
++ + + + L+D+ + G + +A++V S + N V W +L+ +
Sbjct: 241 VHVYLL-KVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSER--NAVSWTSLIVGLAV 297
Query: 270 HGNVEMGERVTRKILEME 287
+G GE EME
Sbjct: 298 NG---FGEEALELFKEME 312
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 24/164 (14%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
+N N ++ K G + A+ +F EM RN VSWT +I G AL LF+ M
Sbjct: 252 KNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEM 311
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF-----------HIHVS 123
+ PSEIT + V A +C ++ GF F I
Sbjct: 312 EG-QGLVPSEITFVGVLYA------CSHCGML-----DEGFEYFRRMKEECGIIPRIEHY 359
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 167
C++D ++ G + A + +++ V+ N V W +++ +HG
Sbjct: 360 GCMVDLLSRAGLVKQAYEYIQNMPVQ-PNAVIWRTLLGACTIHG 402
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 123/318 (38%), Positives = 192/318 (60%), Gaps = 5/318 (1%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
++++++W ++TG V G+++ AR F +MP R+ VSWT +IDGY R+N AL LFR
Sbjct: 194 KKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFRE 253
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M + +P E T+++V A Q G + + I Y +K V N LID Y KC
Sbjct: 254 MQTSK-IKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKN-DTFVGNALIDMYFKC 311
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + AL +F ++ +++ +WT+++ G A++G G+EA+ F +M K + P+ VT++
Sbjct: 312 GNVEMALSIFN--TLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVG 369
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VL+AC+H G+V+EG KFF M + P+I HYGC++D+LG+AG L++A ++ +P +
Sbjct: 370 VLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMK 429
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
N +VW LLGAC H + EM ER +ILE+E G YVL NI A ++ L
Sbjct: 430 -PNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLREL 488
Query: 314 RRVVDERNALKFPGRSLV 331
R+V+ +R K PG SL+
Sbjct: 489 RQVMMDRGIKKTPGCSLI 506
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 131/290 (45%), Gaps = 53/290 (18%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
++G++ YAR LF+ +P +V SW + GY+R+ ++L+ M+ +P T
Sbjct: 60 EFGDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLE-RNVKPDCYTYP 118
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
+F ++ ++ + +H + K G ++ ++ N LI+ Y+ CG I A +F D+S
Sbjct: 119 FLFKGFTRSVALQLGRELHCHVVKYGLDS-NVFAHNALINMYSLCGLIDMARGIF-DMSC 176
Query: 149 E----------------RKNLVSWTSIISGFA-----------MHGMG------------ 169
+ +K+++SWT+I++GF H M
Sbjct: 177 KSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMID 236
Query: 170 --------KEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVL 221
KEA+ F MQ +KP+ T +SVL AC+ G +E G ++ +++ +V
Sbjct: 237 GYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELG-EWIRTYIDKNKVK 295
Query: 222 PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
D LIDM + G +E A + + +P + W ++ + +G
Sbjct: 296 NDTFVGNALIDMYFKCGNVEMALSIFNTLPQR--DKFTWTAMVVGLAING 343
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 75/187 (40%), Gaps = 49/187 (26%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV----VSWTGIIDGYTRMNR 63
+F+ LP+R+ TW M+ GL G E A ++F +M +V V++ G++ T
Sbjct: 320 IFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGM 379
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
+ F M A EP+ I YG
Sbjct: 380 VDEGKKFFASMTARHGIEPN----------------------IAHYG------------- 404
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKEAVENFERMQ 180
C++D K G + A ++ +++ + + N + W +++ +H M + A+E Q
Sbjct: 405 -CMVDLLGKAGHLKEAHEIIKNMPM-KPNSIVWGALLGACRIHKDAEMAERAIE-----Q 457
Query: 181 KVVLKPN 187
+ L+PN
Sbjct: 458 ILELEPN 464
>gi|359472798|ref|XP_002274984.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 324
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 125/324 (38%), Positives = 198/324 (61%), Gaps = 9/324 (2%)
Query: 12 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALF 71
+P +N VTWN MIT K G+++ AR +FE+MP R++ SW+ ++ GY + LALF
Sbjct: 1 MPHKNTVTWNTMITAYSKSGDVKKARLVFEQMPLRDLASWSAMVAGYMYGGEWHSGLALF 60
Query: 72 RRMVACEYTEPSEITILAVFPAIWQNGDVRNC--QLIHGYGEKRGFNAFHIHVSNCLIDT 129
R MV E P ++T+ +V + G + + IHG+ K G+ + + L+D
Sbjct: 61 REMVVNEGLRPDKVTLGSVLSGCARMGSLGLLVGRSIHGFTAKNGWE-LSVDLGTVLVDM 119
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
YAKCG + SA ++F+ ++ KN+ SWT++I G A HG GKEA+ FE MQ + +KPN +
Sbjct: 120 YAKCGFLKSAFRVFD--LMQEKNVASWTALICGSAQHGYGKEALSMFELMQDMGVKPNEM 177
Query: 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
TF +L+AC+ GLVEEG K+F+K +EE + P I+H+GC++D+ G+AG LE+A ++ +
Sbjct: 178 TFTGILSACAQAGLVEEGRKYFNK-IEEYGLEPRIQHFGCMVDLFGKAGLLEEAYEIINS 236
Query: 250 IPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER--GYGGDYVLMYNILAGVWRY 307
+ E NVV+W + L +C H E+ ERVT ++L + GG Y L+ N+ ++
Sbjct: 237 MKLE-PNVVLWSSFLSSCKVHKQFELAERVTEQVLRTVKPENDGGVYTLISNLFVLNDKW 295
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
DAER+R+++ + K G S +
Sbjct: 296 DDAERVRKLMVNQKVRKARGSSFI 319
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 194/327 (59%), Gaps = 5/327 (1%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
+LF + ++N+ +WNVM++G+ K G +E AR LF EM +N +SW+ +IDGY +
Sbjct: 215 AKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYY 274
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
AL +F M E P + + +V A G + + IH Y N+F +
Sbjct: 275 KEALEVFNVMQR-EEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNS-NSFDAVLGT 332
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
L+D YAKCG + A +FE + E+K + +W ++I G MHG ++A+E F +MQK
Sbjct: 333 ALVDMYAKCGRLDMAWDVFEKM--EKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKF 390
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
+PN +T L VL+AC+H G+V+EGL+ F+ M E + P ++HYGC++D+LGRAG L +AE
Sbjct: 391 RPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAE 450
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+V +P E + VW LLGAC HG+VE+GERV + +LE+E G Y L+ NI A
Sbjct: 451 EVMYSMPME-PSAAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARA 509
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
R+ D +R+++ ER G S++
Sbjct: 510 GRWDDVANVRKLMKERGVKTSTGISMI 536
>gi|15241651|ref|NP_196468.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171895|sp|Q9FNN7.1|PP371_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08510
gi|9759345|dbj|BAB10000.1| unnamed protein product [Arabidopsis thaliana]
gi|50897238|gb|AAT85758.1| At5g08510 [Arabidopsis thaliana]
gi|332003930|gb|AED91313.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 511
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 124/323 (38%), Positives = 198/323 (61%), Gaps = 3/323 (0%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FDE+ +R++ WN MITG + G+++ A LF+ MP +NV SWT +I G+++ +
Sbjct: 138 RVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSE 197
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL +F M + +P+ IT+++V PA G++ + + GY + GF +I+V N
Sbjct: 198 ALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFD-NIYVCNAT 256
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
I+ Y+KCG I A +LFE++ +R NL SW S+I A HG EA+ F +M + KP
Sbjct: 257 IEMYSKCGMIDVAKRLFEELGNQR-NLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKP 315
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ VTF+ +L AC HGG+V +G + F M E ++ P ++HYGC+ID+LGR G+L++A +
Sbjct: 316 DAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDL 375
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P + + VVW TLLGACSFHGNVE+ E + + ++E G+ V+M NI A +
Sbjct: 376 IKTMPMK-PDAVVWGTLLGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEK 434
Query: 307 YGDAERLRRVVDERNALKFPGRS 329
+ R+R+++ + K G S
Sbjct: 435 WDGVLRMRKLMKKETMTKAAGYS 457
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 129/355 (36%), Positives = 200/355 (56%), Gaps = 34/355 (9%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LF+E+PER+ +W V++ GL K G++E AR LF++MPCRN+VSW +I+GY + +
Sbjct: 199 QLFEEMPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDS 258
Query: 67 ALALFRRMVACEY------------------------------TEPSEITILAVFPAIWQ 96
AL LF +M + + PS T+++V A+
Sbjct: 259 ALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSG 318
Query: 97 NGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 156
+ + IH Y EK GF I + LI+ YAKCGCI SAL +F ++++K + W
Sbjct: 319 LAVLGKGRWIHSYMEKNGFELDGI-LGTSLIEMYAKCGCIESALTVFR--AIQKKKVGHW 375
Query: 157 TSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVE 216
T+II G +HGM A+ F M K LKPN + F+ VLNAC+H GLV++G ++FD M+
Sbjct: 376 TAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMN 435
Query: 217 ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMG 276
E ++ P ++HYGCL+D+L RAG LE+A+ +P N V+W +LLG HG +++G
Sbjct: 436 EYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPIS-PNKVIWMSLLGGSRNHGKIDIG 494
Query: 277 ERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
E ++++E+ G Y+L+ N+ A + +R ++ +R K PG S V
Sbjct: 495 EYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSV 549
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 139/313 (44%), Gaps = 50/313 (15%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FD + ++++V WN +I G + GE++ A LFEEMP R+ SWT ++DG ++ +
Sbjct: 168 KVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLSKCGKVES 227
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A LF +M C+ + + N +
Sbjct: 228 ARKLFDQM---------------------------PCRNLVSW--------------NAM 246
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
I+ Y K G SAL+LF + + +LV+W +I+G+ ++G +AV+ F M K+ +P
Sbjct: 247 INGYMKSGDFDSALELFYQMPIW--DLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRP 304
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ T +SVL+A S ++ +G ++ +E+ D LI+M + G +E A V
Sbjct: 305 SHATLVSVLSAVSGLAVLGKG-RWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTV 363
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM-ERGYGGDYVLMYNILAGVW 305
I + V W ++ HG M LEM + G + ++ +L
Sbjct: 364 FRAIQKK--KVGHWTAIIVGLGIHG---MANHALALFLEMCKTGLKPNAIIFIGVLNACN 418
Query: 306 RYGDAERLRRVVD 318
G + R+ D
Sbjct: 419 HAGLVDDGRQYFD 431
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 133/278 (47%), Gaps = 22/278 (7%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
K +L YARS+F+ + R+++ W II Y S+ + LF +V EY P T+
Sbjct: 59 KINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVH-EYL-PDNFTLP 116
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
V + G V+ + IHG K GF + + V L++ Y+KCG I A K+F+ +
Sbjct: 117 CVIKGCARLGVVQEGKQIHGLALKIGFGS-DVFVQGSLVNMYSKCGEIDCARKVFDGMI- 174
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF--LSVLNACSHGGLVEE 206
K++V W S+I G+A G A++ FE M P R F +++ S G VE
Sbjct: 175 -DKDVVLWNSLIDGYARCGEIDIALQLFEEM------PERDAFSWTVLVDGLSKCGKVES 227
Query: 207 GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
K FD+M C ++ + +I+ ++G + A ++ +P I ++V W ++
Sbjct: 228 ARKLFDQM--PCR---NLVSWNAMINGYMKSGDFDSALELFYQMP--IWDLVTWNLMIAG 280
Query: 267 CSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+G + + V + ++ G + + ++L+ V
Sbjct: 281 YELNG--QFMDAVKMFFMMLKLGSRPSHATLVSVLSAV 316
>gi|115477124|ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group]
gi|42407356|dbj|BAD08817.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|42407750|dbj|BAD08896.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113624127|dbj|BAF24072.1| Os08g0500600 [Oryza sativa Japonica Group]
Length = 429
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 127/324 (39%), Positives = 197/324 (60%), Gaps = 10/324 (3%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FDE+P RNLV+WN M+ G +++ AR LF+ MP ++VVSWT +I GY + R
Sbjct: 109 KMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQD 168
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF---NAFHIHVS 123
L LFR M +P+E+T+++V A + + +H + +K N +++ +
Sbjct: 169 TLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAA 228
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
LID YAKCG A+K+F S++RKN+ +W ++I+ AM+G +++V+ FE+M++
Sbjct: 229 --LIDMYAKCGRTDIAVKIFN--SLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTG 284
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
KPN +TF+ VL ACSHGGLV+EG + F M C V P++KHYGC++DMLGRAG LE+A
Sbjct: 285 EKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEA 344
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI--LEMERGYGGDYVLMYNIL 301
E++ +P +V+V+ LLGAC H ++ ERV +I L + G +VL+ +I
Sbjct: 345 EELIRSMPMA-PDVMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIY 403
Query: 302 AGVWRYGDAERLRRVVDERNALKF 325
A ++ D R+VV K+
Sbjct: 404 AAAGKWFDVLEARQVVQRSGIRKW 427
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 140/273 (51%), Gaps = 40/273 (14%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
++V+WN +I G VK GE+E A+ +F+EMP RN VSW+ ++ GY + A +F RM
Sbjct: 23 DVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRM- 81
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGE-------KRGFNAFHIH--VS-NC 125
PAI +N N ++ G+ ++ F+ + VS N
Sbjct: 82 ----------------PAIGRNVVTWN-SMVTGFARHGLLPLARKMFDEMPVRNLVSWNA 124
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ-KVVL 184
++ Y+ + A +LF+ + K++VSWT +ISG+A G ++ +E F MQ + +
Sbjct: 125 MLRGYSVNSDMDGARELFD--VMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNV 182
Query: 185 KPNRVTFLSVLNACSHGGLVEEGL---KFFDKMVEECEVLPDIKHYG-CLIDMLGRAGRL 240
+PN VT +SVL+AC++ +EEG F DK VL + + G LIDM + GR
Sbjct: 183 QPNEVTMVSVLSACANLTALEEGRWVHAFIDK---HKMVLNNEYNLGAALIDMYAKCGRT 239
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
+ A K+ + + + NV W L+ + +GN
Sbjct: 240 DIAVKIFNSLDRK--NVSAWNALITRLAMNGNA 270
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 98/214 (45%), Gaps = 47/214 (21%)
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N +I Y KCG + SA ++F+++ R+N VSW++++ G+A G A E F+RM +
Sbjct: 28 NTVIGGYVKCGEMESAKRVFDEMP--RRNGVSWSTMVGGYAAAGELDVAREMFDRMPAI- 84
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV------------------------EECE 219
N VT+ S++ + GL+ K FD+M E +
Sbjct: 85 -GRNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFD 143
Query: 220 VLP--DIKHYGCLIDMLGRAGRLE------QAEKVASGI-PSEITNVVVWRTLLGACSFH 270
V+P D+ + C+I +AGR + +A + S + P+E+T V ++L AC+
Sbjct: 144 VMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMV----SVLSACANL 199
Query: 271 GNVEMGERV------TRKILEMERGYGGDYVLMY 298
+E G V + +L E G + MY
Sbjct: 200 TALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMY 233
>gi|110741623|dbj|BAE98759.1| hypothetical protein [Arabidopsis thaliana]
Length = 504
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 124/323 (38%), Positives = 198/323 (61%), Gaps = 3/323 (0%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FDE+ +R++ WN MITG + G+++ A LF+ MP +NV SWT +I G+++ +
Sbjct: 131 RVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSE 190
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL +F M + +P+ IT+++V PA G++ + + GY + GF +I+V N
Sbjct: 191 ALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFD-NIYVCNAT 249
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
I+ Y+KCG I A +LFE++ +R NL SW S+I A HG EA+ F +M + KP
Sbjct: 250 IEMYSKCGMIDVAKRLFEELGNQR-NLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKP 308
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ VTF+ +L AC HGG+V +G + F M E ++ P ++HYGC+ID+LGR G+L++A +
Sbjct: 309 DAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDL 368
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P + + VVW TLLGACSFHGNVE+ E + + ++E G+ V+M NI A +
Sbjct: 369 IKTMPMK-PDAVVWGTLLGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEK 427
Query: 307 YGDAERLRRVVDERNALKFPGRS 329
+ R+R+++ + K G S
Sbjct: 428 WDGVLRMRKLMKKETMTKAAGYS 450
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 199/330 (60%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ D KLF+ + ++WN MI+G +K G +E AR+LF+ MP +++VSW+ +I GY +
Sbjct: 355 IMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQH 414
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ + LALF M + P E +++V A + + +H Y K G ++
Sbjct: 415 DCFSETLALFHEMQLGQ-IRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKV-NVI 472
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ L+D Y KCGC+ +AL++F +E K + SW ++I G A++G+ + +++ F M+
Sbjct: 473 LGTTLLDMYMKCGCVENALEVFN--GMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKN 530
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ PN +TF+ VL AC H GLV+EG F M+E+ + P++KHYGC++D+LGRAG L
Sbjct: 531 NGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLN 590
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AEK+ +P +V W LLGAC HG+ EMGERV RK++E++ + G +VL+ NI
Sbjct: 591 EAEKLIESMPMA-PDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIF 649
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + D +R ++ ++ +K PG SL+
Sbjct: 650 ASKGDWEDVLEVRGMMKQQGVVKTPGCSLI 679
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 153/333 (45%), Gaps = 65/333 (19%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV------------- 48
++D KLFDE P + V+WN ++ G VK G++E A+ +F++MP RN+
Sbjct: 192 MRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKM 251
Query: 49 ------------------VSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
VSW+ +I GY + AL +F M A E+ +++V
Sbjct: 252 GQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNA-NGMRLDEVVVVSV 310
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI---- 146
A V+ ++IHG + G ++ +++ N LI Y+ G I A KLF
Sbjct: 311 LSACAHLSIVKTGKMIHGLVIRMGIESY-VNLQNALIHMYSGSGEIMDAQKLFNGSHNLD 369
Query: 147 ---------------SVER----------KNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
SVE+ K++VSW+++ISG+A H E + F MQ
Sbjct: 370 QISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQL 429
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++P+ +SV++AC+H +++G K+ + + + ++ L+DM + G +E
Sbjct: 430 GQIRPDETILVSVISACTHLAALDQG-KWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVE 488
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
A +V +G+ E V W L+ + +G VE
Sbjct: 489 NALEVFNGM--EEKGVSSWNALIIGLAVNGLVE 519
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 115/261 (44%), Gaps = 46/261 (17%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ ++ N +I G + AR LF+E P + VSW I+ GY +
Sbjct: 173 DSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVK------------- 219
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
GDV +LI +R A SN +I K
Sbjct: 220 -----------------------KGDVEEAKLIFDQMPQRNIVA-----SNSMIVLLGKM 251
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + A KLF ++ + K++VSW+++ISG+ +GM +EA+ F M ++ + V +S
Sbjct: 252 GQVMEAWKLFNEM--DEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVS 309
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VL+AC+H +V+ G K +V + + LI M +G + A+K+ +G S
Sbjct: 310 VLSACAHLSIVKTG-KMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNG--SH 366
Query: 254 ITNVVVWRTLLGACSFHGNVE 274
+ + W +++ C G+VE
Sbjct: 367 NLDQISWNSMISGCMKCGSVE 387
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 126/264 (47%), Gaps = 31/264 (11%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
L+Y+ +F+ + N W ++ Y + N + AL L++ MV P T +P
Sbjct: 91 LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVK-NNVGPDNYT----YP 145
Query: 93 AIWQNGDVRNCQL----IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
+ Q VR + IH + K GF++ ++V N LI+ YA CG + A KLF++ V
Sbjct: 146 LVVQACAVRLLEFGGKEIHDHVLKVGFDS-DVYVQNTLINMYAVCGNMRDARKLFDESPV 204
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFLSVLNACSHGGLVEEG 207
+ VSW SI++G+ G +EA F++M Q+ ++ N + L G V E
Sbjct: 205 --LDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVL-----LGKMGQVMEA 257
Query: 208 LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA-----EKVASGIPSEITNVVVWRT 262
K F++M E+ D+ + LI + G E+A E A+G+ + VV +
Sbjct: 258 WKLFNEMDEK-----DMVSWSALISGYEQNGMYEEALVMFIEMNANGMR---LDEVVVVS 309
Query: 263 LLGACSFHGNVEMGERVTRKILEM 286
+L AC+ V+ G+ + ++ M
Sbjct: 310 VLSACAHLSIVKTGKMIHGLVIRM 333
>gi|356577724|ref|XP_003556973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Glycine max]
Length = 549
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 136/334 (40%), Positives = 198/334 (59%), Gaps = 9/334 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDGYT 59
L KLFD ++ WN M+ G K G + AR+LFE MP R+VVSWT +I GYT
Sbjct: 178 LSSARKLFDGATFKHAPLWNAMLAGYAKVGNMSNARNLFECMPEKDRDVVSWTTLISGYT 237
Query: 60 RMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
+ + N A+ LFR M+ + +P EI ILAV A G ++ + IH Y EK N
Sbjct: 238 QTHSPNEAITLFRIML-LQNVQPDEIAILAVLSACADLGALQLGEWIHNYIEKHN-NKLR 295
Query: 120 --IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
+ + N LID YAK G I A +LF+++ + K +++WT++ISG A+HG GKEA++ F
Sbjct: 296 KTVPLCNSLIDMYAKSGDISKARQLFQNM--KHKTIITWTTVISGLALHGFGKEALDVFS 353
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
M+K +KPN VT ++VL+ACSH GLVE G F M + + P I+HYGC+ID+LGRA
Sbjct: 354 CMEKARVKPNEVTLIAVLSACSHVGLVELGRNIFTSMRSKYGIEPKIEHYGCMIDLLGRA 413
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297
G L++A ++ +PSE N VW +LL A + +G+ + R + +E G+Y L+
Sbjct: 414 GYLQEAMELVRVMPSE-ANAAVWGSLLSASNRYGDAALAAEALRHLSVLEPHNCGNYSLL 472
Query: 298 YNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
N A + + +A +R+V+ + A K PG S V
Sbjct: 473 SNTYAALGWWKEAAMVRKVMRDTCAEKVPGVSFV 506
>gi|224059226|ref|XP_002299777.1| predicted protein [Populus trichocarpa]
gi|222847035|gb|EEE84582.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 132/323 (40%), Positives = 190/323 (58%), Gaps = 5/323 (1%)
Query: 9 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGAL 68
FDEL +N +WN MI G V+ G++ A +F+EMP R V+SWT +I+G+ +M AL
Sbjct: 71 FDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGFVKMGLFEEAL 130
Query: 69 ALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLID 128
FR+M + EP +TI+ V A G + +H Y K+G ++ + N LID
Sbjct: 131 EWFRKMQVSK-VEPDRVTIVTVLSACANLGALGLGLWVHRYALKKGLRD-NVKICNSLID 188
Query: 129 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR 188
Y++CG I A ++FE + + LVSW SII G A +G +EA+E+F+ MQK KPN
Sbjct: 189 LYSRCGAIELARQVFEKMG--ERTLVSWNSIIGGLAANGFTEEALEHFDLMQKQGFKPND 246
Query: 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
V+F L ACSH GLV+EGLK+FD M ++ P I+HYGC++D+ RAGRLE A V
Sbjct: 247 VSFTGALTACSHTGLVDEGLKYFDIMERVHKISPRIEHYGCIVDLYSRAGRLEDAMSVVQ 306
Query: 249 GIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
+P + VVV +LL AC G+VE+ ER+ ++ ++ G +YVL+ NI A V R+
Sbjct: 307 NMPMKPNEVVVG-SLLAACRTRGDVELAERLMNYLVHLDPGADSNYVLLSNIYAAVGRWD 365
Query: 309 DAERLRRVVDERNALKFPGRSLV 331
A + R + K PG S +
Sbjct: 366 GACKQRMTMKALGIQKKPGFSSI 388
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 106/225 (47%), Gaps = 34/225 (15%)
Query: 81 EPSEITILAVFPAIWQNGDVRNC--QLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFS 138
+P+ +T + + N L+H Y K G + ++ V L+D YAKCG +
Sbjct: 7 DPNHVTFITLLSGCADLPSQGNSLGPLLHAYTRKLGLDTCNLMVGTALVDMYAKCGHVEL 66
Query: 139 ALKLFEDISVE-----------------------------RKNLVSWTSIISGFAMHGMG 169
+ F+++ V+ + ++SWT +I+GF G+
Sbjct: 67 SRLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGFVKMGLF 126
Query: 170 KEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC 229
+EA+E F +MQ ++P+RVT ++VL+AC++ G + GL + + + + ++K
Sbjct: 127 EEALEWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGL-WVHRYALKKGLRDNVKICNS 185
Query: 230 LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
LID+ R G +E A +V + +V W +++G + +G E
Sbjct: 186 LIDLYSRCGAIELARQVFEKMGER--TLVSWNSIIGGLAANGFTE 228
>gi|297846320|ref|XP_002891041.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336883|gb|EFH67300.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 586
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 122/328 (37%), Positives = 202/328 (61%), Gaps = 7/328 (2%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFDE+ ERN+V+W M++G + G++ A +LFEEMP R+V SW I+ T+
Sbjct: 183 QLFDEMSERNVVSWTAMLSGYARSGDIFNAVALFEEMPERDVPSWNAILAACTQNGLFVE 242
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A++LFRRM+ P+E+T++ V A Q G ++ + IH + +R ++ + VSN L
Sbjct: 243 AVSLFRRMINDPCIRPNEVTLVCVLSACAQTGTLQLAKGIHAFAYRRNLSS-DVFVSNSL 301
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV--- 183
+D Y KCG + A +F+ S +K+L +W S+I+ FA+HG +EA+ FE M K+
Sbjct: 302 VDLYGKCGNLEEASSVFKMSS--KKSLTAWNSMINCFALHGRSEEAIAVFEDMMKLNSHD 359
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
+KP+ +TF+ +LNAC+HGGLV +G +FD M + + P I+HYGCLID+LGRAG+ ++A
Sbjct: 360 IKPDHITFIGLLNACTHGGLVSKGRGYFDLMKKRFGIEPRIEHYGCLIDLLGRAGQFDEA 419
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
+ S + E + +W +LL AC +G++++ E + ++ + GG +M N+
Sbjct: 420 LETMSTMKME-ADEAIWGSLLNACKKYGHLDLAEVAVKNLVALNPNNGGYVAMMANLYGE 478
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
+ + +A R R+++ +NA K PG S +
Sbjct: 479 MGNWEEARRARKMIKHQNAYKPPGWSQI 506
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 123/288 (42%), Gaps = 39/288 (13%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRM--NRSNGALALFRRMVACEYTEPSEITILAV 90
L YAR +F+ N + ++ GY+ ++ A + FR MV + P+ V
Sbjct: 73 LSYARFIFDRFSFPNTHLYAAVLTGYSSSLPLHASSAFSFFRLMVNRSFPRPNHFIYPLV 132
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAF----------------HIHVSNCLIDT----- 129
+ + L+H + K GF+ + HI ++ L D
Sbjct: 133 LKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHSYASSVSHITLARQLFDEMSERN 192
Query: 130 ----------YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
YA+ G IF+A+ LFE++ +++ SW +I++ +G+ EAV F RM
Sbjct: 193 VVSWTAMLSGYARSGDIFNAVALFEEM--PERDVPSWNAILAACTQNGLFVEAVSLFRRM 250
Query: 180 -QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
++PN VT + VL+AC+ G ++ K + D+ L+D+ G+ G
Sbjct: 251 INDPCIRPNEVTLVCVLSACAQTGTLQLA-KGIHAFAYRRNLSSDVFVSNSLVDLYGKCG 309
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM 286
LE+A V S ++ W +++ + HG E V ++++
Sbjct: 310 NLEEASSVFKM--SSKKSLTAWNSMINCFALHGRSEEAIAVFEDMMKL 355
>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Brachypodium distachyon]
Length = 552
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 194/325 (59%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LF+ + RN V+W +I+G ++ G+++ AR+LF+ MP R+ VSWT +IDGY + +
Sbjct: 179 ELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFRE 238
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL +FR M + E T+++V A Q G + + Y + G V N L
Sbjct: 239 ALEMFREMQFSK-VRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIK-MDTFVGNAL 296
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+D Y+KCG I AL +F+++ + K +WT++I G A++G G+EA+ F RM +V P
Sbjct: 297 VDMYSKCGSIQQALGVFKEMYIRDK--FTWTAVILGLAVNGHGEEAINMFYRMLRVFEAP 354
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ VTF+ VL AC+H GLV++G FF M + P++ H+GCLID+LGRAG+L++A +
Sbjct: 355 DEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALET 414
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P N +W TLL AC HGN E+G+ +LE++ G Y+L+ N+ A R
Sbjct: 415 IGNMPMR-PNSAIWGTLLAACRVHGNSEIGQLAAEHLLELDTENGMVYILLSNLYAKSNR 473
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ D RLR+V+ E+ K PG SL+
Sbjct: 474 WEDVRRLRQVIMEKGIKKEPGCSLI 498
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 95/221 (42%), Gaps = 18/221 (8%)
Query: 79 YTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFS 138
YT P +L A + G V + +H + K G + HV++ L+ YA G
Sbjct: 19 YTFPP---LLKAVTAAAERGAVGDA--VHAHVVKFGME-LNAHVASSLVLMYAARGDGAV 72
Query: 139 ALKLFEDISVERKNL-VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197
A L + + V W ++ISG + + +F M + + P VT+++VL+A
Sbjct: 73 ARTLLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSA 132
Query: 198 CSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNV 257
C + G++ K V VLPD+K LIDM ++ A ++ G+ E+ N
Sbjct: 133 CGKDKYIWLGMQVH-KCVVASGVLPDLKVGNALIDMYAECSEMDAAWELFEGM--EVRNT 189
Query: 258 VVWRTLLGACSFHGNVE--------MGERVTRKILEMERGY 290
V W +++ G V+ M ER T M GY
Sbjct: 190 VSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGY 230
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 131/321 (40%), Positives = 197/321 (61%), Gaps = 16/321 (4%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
R L N +IT K G LE AR LF ++P R+VV+WT ++ GY ++ + A+ LFRRM
Sbjct: 282 RELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRM 341
Query: 75 VACEYTEPSEITILAVF-----PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDT 129
+ +P ++T +V PA Q G + QL+H G+N +++ + L+
Sbjct: 342 QQ-QGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHA-----GYN-LDVYLQSALVSM 394
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGF-AMHGMGKEAVENFERMQKVVLKPNR 188
YAKCG + A +F +S +N+V+WT+II+G A HG +EA+E F++M+K +KP++
Sbjct: 395 YAKCGSMDDASLVFNQMS--ERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDK 452
Query: 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
VTF SVL+AC+H GLVEEG K F M + + P ++HY C +D+LGRAG LE+AE V
Sbjct: 453 VTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVIL 512
Query: 249 GIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
+P I VW LL AC H +VE GER +L+++ G YV + +I A RY
Sbjct: 513 SMPF-IPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYE 571
Query: 309 DAERLRRVVDERNALKFPGRS 329
DAE++R+V+++R+ +K PG+S
Sbjct: 572 DAEKVRQVMEKRDVVKEPGQS 592
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 145/314 (46%), Gaps = 51/314 (16%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FD LPE+N+VTW ++I G + G+++ A L E M V
Sbjct: 205 IFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVA------------------ 246
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
P++IT ++ + + + +H Y + G+ + V N LI
Sbjct: 247 --------------PNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGR-ELWVVNSLI 291
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
Y KCG + A KLF D+ +++V+WT++++G+A G EA+ F RMQ+ +KP+
Sbjct: 292 TMYCKCGGLEEARKLFSDLP--HRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPD 349
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
++TF SVL +CS ++EG + ++V L D+ L+ M + G ++ A V
Sbjct: 350 KMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNL-DVYLQSALVSMYAKCGSMDDASLVF 408
Query: 248 SGIPSEITNVVVWRTLL-GACSFHGNVEMGERVTRKILEM-----ERGYGGDYVLMYNIL 301
+ + NVV W ++ G C+ HG R+ LE ++G D V ++L
Sbjct: 409 NQMSER--NVVAWTAIITGCCAQHGRC-------REALEYFDQMKKQGIKPDKVTFTSVL 459
Query: 302 AGVWRYGDAERLRR 315
+ G E R+
Sbjct: 460 SACTHVGLVEEGRK 473
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 127/263 (48%), Gaps = 31/263 (11%)
Query: 13 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFR 72
P R L N +++ K G L AR +F+ + RN+VSWT +I+ + N++ A +
Sbjct: 80 PNRYL--ENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYE 137
Query: 73 RM--VACEYTEPSEITILAVF--PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLID 128
M C+ + + +++L F P + Q G + +++ E V L+
Sbjct: 138 TMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLE------LEPRVGTSLVG 191
Query: 129 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR 188
YAKCG I A +F+ + KN+V+WT +I+G+A G A+E E MQ+ + PN+
Sbjct: 192 MYAKCGDISKARVIFDRLP--EKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNK 249
Query: 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG-------CLIDMLGRAGRLE 241
+TF S+L C+ +E G K +++ YG LI M + G LE
Sbjct: 250 ITFASILQGCTTPAALEHGKKVHRYIIQ--------SGYGRELWVVNSLITMYCKCGGLE 301
Query: 242 QAEKVASGIPSEITNVVVWRTLL 264
+A K+ S +P +VV W ++
Sbjct: 302 EARKLFSDLPHR--DVVTWTAMV 322
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 91/168 (54%), Gaps = 7/168 (4%)
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
++ N L+ YAKCG + A ++F+ S+ +N+VSWT++I F EA + +E M+
Sbjct: 83 YLENTLLSMYAKCGSLTDARRVFD--SIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMK 140
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE-CEVLPDIKHYGCLIDMLGRAGR 239
KP++VTF+S+LNA ++ L++ G K ++VE E+ P + L+ M + G
Sbjct: 141 LAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVG--TSLVGMYAKCGD 198
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME 287
+ +A + +P + NVV W L+ + G V++ + + + E
Sbjct: 199 ISKARVIFDRLPEK--NVVTWTLLIAGYAQQGQVDVALELLETMQQAE 244
>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
Length = 1280
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 133/336 (39%), Positives = 200/336 (59%), Gaps = 10/336 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKW----GELEYARSLFEEMPCR--NVVSWTGII 55
L++G L E + VT + LV G E A +F+EMP R N+VSW ++
Sbjct: 820 LREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSML 879
Query: 56 DGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF 115
+ + R N L +F M+ ++ P TI++V A + G + + +H Y EK G
Sbjct: 880 NSFAANGRPNEVLTVFWEMLGVDFA-PDGFTIVSVLTACAEFGALALGRRVHVYVEKVGL 938
Query: 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
+ HVSN LID YAKCG + A ++FE++ + R +VSWTS+I G A +G GKEA+E
Sbjct: 939 VE-NSHVSNALIDLYAKCGSVNDARRIFEEMGLGR-TVVSWTSLIVGLAANGFGKEALEL 996
Query: 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
F M++ L P +T + VL ACSH GLV++G ++FD+M E+ + P I+H GC++D+LG
Sbjct: 997 FSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLG 1056
Query: 236 RAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV 295
RAGR+E+A +P E N VVWRTLLG+C+ H +E+G+ +++E++ G+ GDYV
Sbjct: 1057 RAGRVEEAYDYIITMPLE-PNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYV 1115
Query: 296 LMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
L+ N+ A V + D LR+ + + K PG SLV
Sbjct: 1116 LLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLV 1151
>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 129/324 (39%), Positives = 192/324 (59%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
FD +P R+LV+WN MI G K GE+E AR +F++M +NV+SW+ +IDGY + S A
Sbjct: 230 FFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEA 289
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LFR+M+ C+ +P ++++ A Q G + + IH Y KR I V L+
Sbjct: 290 LNLFRQML-CQGIKPDRVSVVGAVSACSQLGALDQGRWIHLY-MKRNRMLLDIVVQTALV 347
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y KCG A ++F S+ +N+VSW +I G M+G GKEA+E F +M+ + +
Sbjct: 348 DMYLKCGSRDEARRIFN--SMPERNVVSWNVMIVGLGMNGFGKEALECFTQMEMERIPMD 405
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+ FL VL ACSH LV EGL F++M + P ++HYGCL+D+LGRAG+L+Q + +
Sbjct: 406 DLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNII 465
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P + N +W +LL AC H NV + E V ++ E++ G YVLM NI A V +
Sbjct: 466 QSMPMK-PNAALWGSLLLACRIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMW 524
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
R+R+++ ER K GRS++
Sbjct: 525 EGMLRIRKLMKERKMKKDIGRSVI 548
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 142/294 (48%), Gaps = 39/294 (13%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I+ + GE +AR++F+ +++VSW ++ GY A +F M +
Sbjct: 149 NGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVV 208
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG--------FNAFHIH--VS-NCLIDT 129
S +I GYG+K G F++ VS N +ID
Sbjct: 209 SWS--------------------IMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDG 248
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
YAK G + A ++F+ + +KN++SW+ +I G+A H KEA+ F +M +KP+RV
Sbjct: 249 YAKVGEMEVAREIFDKML--QKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRV 306
Query: 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
+ + ++ACS G +++G ++ ++ +L DI L+DM + G ++A ++ +
Sbjct: 307 SVVGAVSACSQLGALDQG-RWIHLYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRIFNS 365
Query: 250 IPSEITNVVVWRTLLGACSFHG-NVEMGERVTRKILEMERGYGGDYVLMYNILA 302
+P NVV W ++ +G E E T+ +EMER D + + ++A
Sbjct: 366 MPER--NVVSWNVMIVGLGMNGFGKEALECFTQ--MEMERIPMDDLLFLGVLMA 415
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 1 FLKDGSK-----LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV----VSW 51
+LK GS+ +F+ +PERN+V+WNVMI GL G + A F +M + + +
Sbjct: 350 YLKCGSRDEARRIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFTQMEMERIPMDDLLF 409
Query: 52 TGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
G++ + N L +F +M EP
Sbjct: 410 LGVLMACSHANLVTEGLHIFNQMKGVYRLEP 440
>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 119/324 (36%), Positives = 193/324 (59%), Gaps = 4/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFDE+P+ ++V+ M+T G L+ AR LF+ +P ++ + W +IDGYT+ + N A
Sbjct: 176 LFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEA 235
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LFRRM+ EP E+T++ V A+ Q G V + + +H Y + ++ V+ L+
Sbjct: 236 LQLFRRMLRSS-AEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALV 294
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y KCG + A+ +F I K++V W ++I+G+AMHG ++A+E F +++ L P
Sbjct: 295 DMYCKCGSLEDAVAVFHGIG--NKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPT 352
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TF+ +LNACSH GLVEEG FF M E + P I+HYGC++D+LGRAG +E+A +
Sbjct: 353 DITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLV 412
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+ + + V+W +LL AC H N+ +G+R+ ++ G Y+L+ NI A V ++
Sbjct: 413 QSL-TITPDAVMWVSLLAACRLHKNMALGQRIADFLVANGLANSGMYILLSNIYAAVGKW 471
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
+ R+R ++ K PG S +
Sbjct: 472 EEVARVRSMMKASGIQKEPGCSAI 495
>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 609
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 199/331 (60%), Gaps = 3/331 (0%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
F+ D K+FD P R++ +WN+M++G + G+++ AR LF+EMP ++VVSWT +I G +
Sbjct: 152 FVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQ 211
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+ AL +F M+A + P+E T+ + A + + +H Y +K
Sbjct: 212 VGYFMEALDIFHNMLA-KGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNER 270
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
++ LID YAKCG + A KLF ++ + W ++I GFA+HG KEA+E FE+M+
Sbjct: 271 LLAG-LIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMK 329
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ PN+VTF+++LNACSHG VEEG +F+ M V P+++HYGCL+D+LGRAGRL
Sbjct: 330 IEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRL 389
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
++AE++ S + +V +W LL AC H + EMGERV + + E++ + G +VL+ NI
Sbjct: 390 KEAEEIISSM-HLTPDVAIWGALLSACKIHKDAEMGERVGKIVKELDPNHLGCHVLLANI 448
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ + +A LR + E K PG S +
Sbjct: 449 YSLTGNWNEARTLREKIAESGKKKTPGCSSI 479
>gi|357439099|ref|XP_003589826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478874|gb|AES60077.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 526
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 198/328 (60%), Gaps = 9/328 (2%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRN--VVSWTGIIDGYTRMNRS 64
KLFDE V N MI VK G++ AR LF+ M R+ V SWT +I GYT+ +
Sbjct: 167 KLFDEFGGNGCV-LNAMIVAYVKVGDVSNARKLFDSMLERDKDVFSWTAMISGYTQAHNP 225
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
N A+ LFRRM E +P EI ILAV A G + + IH Y EK + + + N
Sbjct: 226 NEAIKLFRRM-QLENVKPDEIAILAVLSACADLGALHLGEWIHNYIEKHKLSKI-VPLYN 283
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV-V 183
LID YAK G I AL+LFE++ + K +++WT++I+G A+HG+GKEA+ F M+K
Sbjct: 284 SLIDMYAKSGNIRKALELFENM--KHKTIITWTTMIAGLALHGLGKEALRVFSCMEKEDR 341
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
+KPN VTF+++L+ACSH GLVE G +F M + P I+HYGC+ID+LGRAG L++A
Sbjct: 342 VKPNEVTFIAILSACSHVGLVELGRDYFTSMRSRYGIEPKIEHYGCMIDLLGRAGHLQEA 401
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
+++ +P E N +W +LL A + G+ E+ E R + +E G+ G+Y L+ N A
Sbjct: 402 KEMVLRMPFE-ANAAIWGSLLAASTRCGDAELAEEALRHLTVLEPGHCGNYSLLSNTYAS 460
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
+ R+ ++ +R+V+ + K PG S +
Sbjct: 461 LGRWNESRMVRKVMQDAGVEKVPGVSFI 488
>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 118/325 (36%), Positives = 197/325 (60%), Gaps = 4/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FDE+P R++V+WN M++G G+LE AR +F++M R+V+SW +I GY + + +
Sbjct: 169 QVFDEMPLRDVVSWNTMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSD 228
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ +F M P ++T+++V A G + + I + RG ++++ N L
Sbjct: 229 AIEVFHEMQKVGGVVPDDVTLVSVLSACAHVGALDFGRWIDRFVGWRG-RGLNLYLGNAL 287
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YAKCG + A ++F+ + ++++SW+++I G HG EA + +M + +KP
Sbjct: 288 IDMYAKCGTMEEARRIFD--GMRERDVISWSTMICGSGTHGDADEAFGYYSKMLECGVKP 345
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N VTF+ +L+ACSH GLV++G++ F +M++E ++P + HYGC+ID+L RAGRL++AE +
Sbjct: 346 NEVTFMGLLSACSHAGLVDKGIELFSRMIQEYRIVPKVGHYGCVIDLLSRAGRLDEAEDL 405
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ +P E NV+VW LLG C H + GERV + +LE++ Y G YV + A V R
Sbjct: 406 INSMPIE-PNVIVWGALLGGCRIHKDFRRGERVAQHLLELDSEYTGSYVYIAGAKASVGR 464
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
DA + + +K PG S +
Sbjct: 465 VDDAANCWLRMQHKGIIKDPGCSKI 489
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 132/288 (45%), Gaps = 39/288 (13%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT-EPSEITILA 89
L +A+ +F ++P NV SW II + AL F R ++ P+E +
Sbjct: 59 ANLYHAQLIFAQLPNPNVFSWNAIIKAHINCGAWEHALNCFNRQLSLPSAPNPNEYIYTS 118
Query: 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK----------------- 132
+ A + + +H K G + +IH+ L+D Y K
Sbjct: 119 LIKACAGLEAIADGLKVHAVVIKSGLDN-NIHLGTSLVDMYFKFREPASAGQVFDEMPLR 177
Query: 133 --------------CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER 178
CG + SA ++F+ + +ER +++SW ++I G+ +G +A+E F
Sbjct: 178 DVVSWNTMVSGYCLCGDLESARRVFDQM-LER-DVISWNAMIGGYVQNGKYSDAIEVFHE 235
Query: 179 MQKV-VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
MQKV + P+ VT +SVL+AC+H G ++ G ++ D+ V ++ LIDM +
Sbjct: 236 MQKVGGVVPDDVTLVSVLSACAHVGALDFG-RWIDRFVGWRGRGLNLYLGNALIDMYAKC 294
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
G +E+A ++ G+ +V+ W T++ HG+ + K+LE
Sbjct: 295 GTMEEARRIFDGMRER--DVISWSTMICGSGTHGDADEAFGYYSKMLE 340
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 129/326 (39%), Positives = 198/326 (60%), Gaps = 6/326 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LF E+PERN+ +WN ++ G K G ++ ARSLF+ MP R+VVSW +I Y + R+
Sbjct: 213 RLFGEMPERNVGSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAE 272
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL LF+ M+ + S I I ++ A Q G + + IH Y KR + + L
Sbjct: 273 ALELFKEMMLAGVSADS-IIITSILSACAQIGALDMGRWIHAY-MKRSKLRNDVFLDTAL 330
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+D YAKCGCI +A +F ++ RKNL SW +++SG A+HG G A+E F++M+ + P
Sbjct: 331 VDMYAKCGCIDTAFGVFN--TMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGP 388
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N +TF++VL+ACSH G VEEG K F++M +E + P ++HYGC++D+L R G + +A+++
Sbjct: 389 NDITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEM 448
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E NVV+W LL AC HG +GE V I ++ GG YVL+ NI A +
Sbjct: 449 IRTMPLE-PNVVIWGALLNACKVHGYTNVGEDVVGYIQKLVSEDGGCYVLLSNIFAAKSQ 507
Query: 307 YGDAERLRRVVDERNA-LKFPGRSLV 331
+ + E+ R+++ + K PG S +
Sbjct: 508 WNEVEKTRKMMKQMGVEKKIPGYSSI 533
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 112/249 (44%), Gaps = 21/249 (8%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
++YA +F + + SWT +I G+ AL + M E ++ T L V
Sbjct: 76 IDYAFWVFVGINYPDSYSWTTMIRGFVEAKNPEKALEFYGLMRQ-RGVELNKFTFLFVLK 134
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
A + +++HG K GF + + N LI Y KCG I A LF+++ N
Sbjct: 135 AYGLRPSYQEGRIVHGKLVKVGF-CYDVFTRNALIHMYLKCGSITDAHLLFDEMP--NHN 191
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
+V+W ++I+G G + A F M + N ++ +V+ S G V+ FD
Sbjct: 192 VVTWNTMITGCFGCGDTERARRLFGEMP----ERNVGSWNAVVGGYSKLGHVDIARSLFD 247
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQA-----EKVASGIPSEITNVVVWRTLLGAC 267
M E D+ +G +I + GR +A E + +G+ ++ ++ ++L AC
Sbjct: 248 LMPER-----DVVSWGSMISAYVQNGRAAEALELFKEMMLAGVSAD---SIIITSILSAC 299
Query: 268 SFHGNVEMG 276
+ G ++MG
Sbjct: 300 AQIGALDMG 308
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 3/159 (1%)
Query: 146 ISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVE 205
+ + + SWT++I GF ++A+E + M++ ++ N+ TFL VL A +
Sbjct: 84 VGINYPDSYSWTTMIRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFVLKAYGLRPSYQ 143
Query: 206 EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
EG K+V + D+ LI M + G + A + +P+ NVV W T++
Sbjct: 144 EGRIVHGKLV-KVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEMPNH--NVVTWNTMIT 200
Query: 266 ACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
C G+ E R+ ++ E G V Y+ L V
Sbjct: 201 GCFGCGDTERARRLFGEMPERNVGSWNAVVGGYSKLGHV 239
>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 196/330 (59%), Gaps = 2/330 (0%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L++ ++F +P + V+W +I+G KWG ++ A ++F+ MP +N SW ++ Y +
Sbjct: 173 LEEARRVFHTIPHPDSVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQT 232
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
NR + A ALF RM A + + A G + + IH Y ++ G
Sbjct: 233 NRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGIE-LDSK 291
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
++ ++D Y KCGC+ AL++F + + + + SW +I G AMHG G+ A++ F+ M++
Sbjct: 292 LTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMER 351
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ P+ +TFL++L AC+H GLVEEG +F M+ + P ++H+GC++D+LGRAG +
Sbjct: 352 QRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVP 411
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A K+ +P +V V TLLGAC H N+E+GE + R+++E+E G YVL+ N+
Sbjct: 412 EARKLIDEMPVS-PDVTVLGTLLGACKKHRNIELGEEIGRRVIELEPNNSGRYVLLANLY 470
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ DA ++R+++D+R K PG S++
Sbjct: 471 ANAGKWEDAAKVRKLMDDRGVKKAPGFSMI 500
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 126/331 (38%), Positives = 196/331 (59%), Gaps = 6/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYA-RSLFEEMPCRNVVSWTGIIDGYTR 60
++D L D + ER++V+WN +++ + G +E A R +F E P +NVVSW +I GY+
Sbjct: 159 IEDARHLLDRMLERDVVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSH 218
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
R + L LF M +P T+++V A G + + +H Y +K G +
Sbjct: 219 AGRFSEVLVLFEDMQHAG-VKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGI-SIDG 276
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V+ L+D Y+KCG I AL++F S RK++ +W SIISG + HG G+ A++ F M
Sbjct: 277 FVATALVDMYSKCGSIEKALEVFN--SCLRKDISTWNSIISGLSTHGSGQHALQIFSEML 334
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
KPN VTF+ VL+ACS GL++EG + F+ MV + P I+HYGC++D+LGR G L
Sbjct: 335 VEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLL 394
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+AE++ +P + + VVW +LLGAC HGNVE+ ERV +K+LE+ +V + N+
Sbjct: 395 EEAEELVQKMPQKEAS-VVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNM 453
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + R+ D +R+ + + K PG S++
Sbjct: 454 YASMGRWKDVMEVRQKMRAQGVRKDPGCSMI 484
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 134/307 (43%), Gaps = 39/307 (12%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
+ YA S+F +P N W II Y AL +F +M+ P + T
Sbjct: 58 IPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVL-PDKYTFTFALK 116
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER-- 150
+ V + IHG+ K G + + N LI YA CGCI A L + + +ER
Sbjct: 117 SCGSFSGVEEGRQIHGHVLKTGLGD-DLFIQNTLIHLYASCGCIEDARHLLDRM-LERDV 174
Query: 151 -----------------------------KNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
KN+VSW ++I+G++ G E + FE MQ
Sbjct: 175 VSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQH 234
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KP+ T +SVL+AC+H G + +G ++ +++ + D L+DM + G +E
Sbjct: 235 AGVKPDNCTLVSVLSACAHVGALSQG-EWVHAYIDKNGISIDGFVATALVDMYSKCGSIE 293
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A +V + + ++ W +++ S HG+ + ++ ++L G+ + V +L
Sbjct: 294 KALEVFNSCLRK--DISTWNSIISGLSTHGSGQHALQIFSEML--VEGFKPNEVTFVCVL 349
Query: 302 AGVWRYG 308
+ R G
Sbjct: 350 SACSRAG 356
>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 123/320 (38%), Positives = 191/320 (59%), Gaps = 5/320 (1%)
Query: 12 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALF 71
+PE++LV+ MIT K+G ++ AR LF+ + R+ + W +IDGY + N L LF
Sbjct: 1 MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60
Query: 72 RRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYA 131
R+M+ + P+E+T+LAV A Q G + + +H Y E G ++ V LID Y+
Sbjct: 61 RQMLNAK-VRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGI-GINVRVGTSLIDMYS 118
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191
KCG + A +FE IS K++V+W S++ G+AMHG ++A+ F+ M + +P +TF
Sbjct: 119 KCGSLEDARLVFERIS--NKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITF 176
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
+ VLNACSH GLV EG KFF M +E + P ++HYGC++++LGRAG LE+A ++ +
Sbjct: 177 IGVLNACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNME 236
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
+ + V+W TLLGAC HGN+ +GE++ ++ G YVL+ NI A +
Sbjct: 237 ID-QDPVLWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVA 295
Query: 312 RLRRVVDERNALKFPGRSLV 331
R+R ++ E K PG S +
Sbjct: 296 RVRTLMKESGFEKEPGCSSI 315
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 129/331 (38%), Positives = 198/331 (59%), Gaps = 5/331 (1%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
FL + K F E + ++V WN MI GL K GE++ +R LF+EMP RN VSW +I GY R
Sbjct: 175 FLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVR 234
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
R AL LF +M E +PSE T++++ A + G ++ + IH Y K F ++
Sbjct: 235 NGRLREALDLFGQMQE-ERIKPSEFTMVSLLNASARLGALKQGEWIHDYIRKNNFE-LNV 292
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V+ +ID Y KCG I A ++FE + K L SW ++I G AM+G EA++ F R++
Sbjct: 293 IVTASIIDMYCKCGSIGEAFQVFEMAPL--KGLSSWNTMILGLAMNGCENEAIQLFSRLE 350
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
L+P+ VTF+ VL AC++ GLV++ ++F M + ++ P IKHY C++D LGRAG L
Sbjct: 351 CSNLRPDDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPSIKHYSCMVDTLGRAGLL 410
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+AE++ +P + ++W +LL AC HGNVE+ +R + I++++ YVL+ NI
Sbjct: 411 EEAEELIRNMPVN-PDAIIWSSLLSACRKHGNVELAKRAAKHIVDLDGNDSCGYVLLSNI 469
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ +A R + E+ K PG SL+
Sbjct: 470 YAASDQFEEAMEQRLSMKEKQIEKEPGCSLI 500
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 142/306 (46%), Gaps = 41/306 (13%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKW------GELEYARSLFEEMPCRNVVSWTGII 55
+KD K+ L + L + ++ ++ + G++ YA +F ++ N+ SW II
Sbjct: 37 MKDLQKIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQIHSPNLFSWNTII 96
Query: 56 DGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF 115
G+++ + + A++LF M+ +P +T +VF A Q G +HG K G
Sbjct: 97 RGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLHGRVIKLGL 156
Query: 116 N------------------------------AFHIHVSNCLIDTYAKCGCIFSALKLFED 145
F I N +I AKCG + + KLF++
Sbjct: 157 QFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEVDESRKLFDE 216
Query: 146 ISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVE 205
+ + +N VSW S+ISG+ +G +EA++ F +MQ+ +KP+ T +S+LNA + G ++
Sbjct: 217 MPL--RNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNASARLGALK 274
Query: 206 EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
+G ++ + + ++ +IDM + G + +A +V P + + W T++
Sbjct: 275 QG-EWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAP--LKGLSSWNTMIL 331
Query: 266 ACSFHG 271
+ +G
Sbjct: 332 GLAMNG 337
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 126/331 (38%), Positives = 195/331 (58%), Gaps = 5/331 (1%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
FL + ++FD ++VTWN MI GL K GE++ +R LF++M RN VSW +I GY R
Sbjct: 147 FLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVR 206
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
R A+ LF RM E +PSE T++++ A G +R + IH Y K F A +
Sbjct: 207 KGRFFEAMELFSRMQE-EGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNF-ALNS 264
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V +ID Y+KCG I AL++F+ S +K L W S+I G AM G G EAV F +++
Sbjct: 265 IVITAIIDMYSKCGSIDKALQVFK--SAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLE 322
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
LKP+ V+F+ VL AC+H G+V+ +F M E ++ P IKHY C++D+LGRAG L
Sbjct: 323 SSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLL 382
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+AE++ +P + ++W +LL +C +GN+EM ++ +++ E++ ++L+ N+
Sbjct: 383 EEAEELIKSMPVN-PDAIIWGSLLSSCREYGNIEMAKQAAKRVNELDPNESSSFILLSNV 441
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + +A R + E+ K PG SL+
Sbjct: 442 YAAHNHFEEAIEQRLSLKEKQMDKEPGCSLI 472
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 154/350 (44%), Gaps = 45/350 (12%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKW-----GELEYARSLFEEMPCRNVVSWTGIID 56
+KD K+ +L + L + + ++ + G++ YA +F ++ N+ W II
Sbjct: 9 MKDLQKIHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFVWNTIIR 68
Query: 57 GYTRMNRSNGALALF-RRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHG------- 108
G+++ + + A++LF M T+P +T +VF A Q G +HG
Sbjct: 69 GFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKLGL 128
Query: 109 -------------------YGEKR----GFNAFHIHVSNCLIDTYAKCGCIFSALKLFED 145
GE + G F + N +I AKCG I + +LF+
Sbjct: 129 ENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFDK 188
Query: 146 ISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVE 205
+ + +N VSW S+ISG+ G EA+E F RMQ+ +KP+ T +S+LNAC+ G +
Sbjct: 189 MLL--RNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALR 246
Query: 206 EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
+G D +V+ L I +IDM + G +++A +V P + + W +L+
Sbjct: 247 QGEWIHDYIVKNNFALNSIV-ITAIIDMYSKCGSIDKALQVFKSAPKK--GLSCWNSLIL 303
Query: 266 ACSFHGNVEMGERVTRKILEMERG-YGGDYVLMYNILAGVWRYGDAERLR 314
+ G G R ++E D+V +L G +R +
Sbjct: 304 GLAMSGR---GNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAK 350
>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 471
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 119/330 (36%), Positives = 196/330 (59%), Gaps = 3/330 (0%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + LFD++P R++++WN ++ G G++E +F+EM RNV SW G+I GY +
Sbjct: 103 MMEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGYAQN 162
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R + L F+RMV P++ T+ V A + G + +H YGE G+N ++
Sbjct: 163 GRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGYNKVDVN 222
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LID Y KCG I A+++F+ I +R++L+SW ++I+G A HG G EA++ F M+
Sbjct: 223 VKNALIDMYGKCGAIEIAMEVFKGI--KRRDLISWNTMINGLAAHGHGTEALDLFHEMKN 280
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ P++VTF+ VL AC H GLVE+GL +F+ M + + P I+H GC++D+L RAG L
Sbjct: 281 CGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSITPQIEHCGCVVDLLSRAGFLT 340
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
QA + + +P + + V+W TLLGA + V+ GE ++++++E ++V++ NI
Sbjct: 341 QAVEFINKMPVK-ADAVIWATLLGASKVYKKVDTGELALKELIKLEPRNPANFVMLSNIY 399
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
R+ DA RL+ + + K G S +
Sbjct: 400 GDAGRFDDAARLKVAMRDTGFKKEAGISWI 429
>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Brachypodium distachyon]
Length = 598
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/336 (39%), Positives = 199/336 (59%), Gaps = 10/336 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKW----GELEYARSLFEEMPC--RNVVSWTGII 55
L+ G L E + LV+ + LV G E A +F+E+P RN+VSW ++
Sbjct: 138 LRYGEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVL 197
Query: 56 DGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF 115
+G+ R N L +FR M+ E+ P T+++V A + G + + +H + K G
Sbjct: 198 NGFAANGRPNEVLTVFREMLEVEFA-PDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGL 256
Query: 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
+ H N LID YAKCG + A K+F ++ V R +VSWTS+I G A++G G +A++
Sbjct: 257 VG-NAHAGNALIDLYAKCGGVDDARKMFGEMGVGR-TVVSWTSLIVGLAVNGFGMDALQL 314
Query: 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
F M++ L P +T + VL ACSH GLV++G ++FD+M E + P I+H GC++D+LG
Sbjct: 315 FSMMEREKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLG 374
Query: 236 RAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV 295
RAGR+E+A + +P E N VVWRTLLGAC+ H +E+GE +++E++ G+ GDYV
Sbjct: 375 RAGRVEEAHNYITTMPLE-PNAVVWRTLLGACAMHKKLEIGEAAWARLVELDPGHSGDYV 433
Query: 296 LMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
L+ N+ AGV R+ D LR+ + K PG SLV
Sbjct: 434 LLSNLYAGVGRWADVHVLRKTMVTHGVRKNPGHSLV 469
>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
Length = 592
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/336 (39%), Positives = 200/336 (59%), Gaps = 10/336 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKW----GELEYARSLFEEMPCR--NVVSWTGII 55
L++G L E + VT + LV G E A +F+EMP R N+VSW ++
Sbjct: 132 LREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSML 191
Query: 56 DGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF 115
+ + R N L +F M+ ++ P TI++V A + G + + +H Y EK G
Sbjct: 192 NSFAANGRPNEVLTVFWEMLGVDFA-PDGFTIVSVLTACAEFGALALGRRVHVYVEKVGL 250
Query: 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
+ HVSN LID YAKCG + A ++FE++ + R +VSWTS+I G A +G GKEA+E
Sbjct: 251 -VENSHVSNALIDLYAKCGSVNDARRIFEEMGLGR-TVVSWTSLIVGLAANGFGKEALEL 308
Query: 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
F M++ L P +T + VL ACSH GLV++G ++FD+M E+ + P I+H GC++D+LG
Sbjct: 309 FSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLG 368
Query: 236 RAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV 295
RAGR+E+A +P E N VVWRTLLG+C+ H +E+G+ +++E++ G+ GDYV
Sbjct: 369 RAGRVEEAYDYIITMPLE-PNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYV 427
Query: 296 LMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
L+ N+ A V + D LR+ + + K PG SLV
Sbjct: 428 LLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLV 463
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 200/327 (61%), Gaps = 5/327 (1%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
KLF E + ++WN MI+G VK GE+E AR+LF+ MP ++ VSW+ +I GY + +R
Sbjct: 343 AQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRF 402
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
L LF+ M E T+P E +++V A + + IH Y K G +I +
Sbjct: 403 TETLVLFQEM-QIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLK-INIILGT 460
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LI+ Y K GC+ AL++F+ +E K + +W ++I G AM+G+ ++++ F M++ +
Sbjct: 461 TLINMYMKLGCVEDALEVFK--GLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGV 518
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
PN +TF++VL AC H GLV+EG + F+ M++E ++ P+IKHYGC++D+LGRAG L++AE
Sbjct: 519 TPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAE 578
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
++ +P +V W LLGAC +G+ E GER+ RK++E+ + G VL+ NI A
Sbjct: 579 ELIESMPMA-PDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASK 637
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
+ D +R ++ + +K PG S++
Sbjct: 638 GNWVDVLEVRGMMRQHGVVKTPGCSMI 664
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 143/302 (47%), Gaps = 34/302 (11%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+++ ++D +PERN++ N MI K G +E A LF EM +++VSW+ +I Y +
Sbjct: 208 VEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQN 267
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL LF+ M A E+ +L+V A + V +L+HG K G + ++
Sbjct: 268 EMYEEALILFKEMNA-NGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETY-VN 325
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDI-----------------------------SVERKN 152
+ N LI Y+ C + +A KLF + S+ K+
Sbjct: 326 LQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKD 385
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
VSW+++ISG+A E + F+ MQ KP+ +SV++AC+H +++G K+
Sbjct: 386 NVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQG-KWIH 444
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
+ + + +I LI+M + G +E A +V G+ E V W L+ + +G
Sbjct: 445 AYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGL--EEKGVSTWNALILGLAMNGL 502
Query: 273 VE 274
V+
Sbjct: 503 VD 504
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 113/225 (50%), Gaps = 31/225 (13%)
Query: 54 IIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVR----NCQLIHGY 109
++ GY + N A+ +++ M+ + +P ++Q+ +R + + I +
Sbjct: 97 MMKGYMQRNSPCKAIWVYKFMLESNVAADN-----YTYPILFQSCSIRLAEFDGKCIQDH 151
Query: 110 GEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 169
K GF++ +++ N LI+ YA CG + A K+F+ SV ++VSW S+++G+ + G
Sbjct: 152 VLKVGFDS-DVYIQNTLINMYAVCGNLSDARKVFDGSSV--LDMVSWNSMLAGYVLVGNV 208
Query: 170 KEAVENFERM-QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG 228
+EA + ++RM ++ V+ N + L G VEE K F++M ++ D+ +
Sbjct: 209 EEAKDVYDRMPERNVIASNSMIVL-----FGKKGNVEEACKLFNEMKQK-----DLVSWS 258
Query: 229 CLIDMLGRAGRLEQA-----EKVASGIPSEITNVVVWRTLLGACS 268
LI + E+A E A+GI + + VV ++L ACS
Sbjct: 259 ALISCYEQNEMYEEALILFKEMNANGI---MVDEVVVLSVLSACS 300
>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
Length = 585
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 129/324 (39%), Positives = 190/324 (58%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
FD +P R+LV+WN MI G K GE+E AR +F++M +NV+SW+ +IDGY S A
Sbjct: 230 FFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEA 289
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LFR+M+ C+ +P ++++ A Q G + + IH Y KR I V L+
Sbjct: 290 LNLFRQML-CQGIKPDRVSVVGAVSACSQLGALDQGRWIHLY-MKRNRMLLDIVVQTALV 347
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y KCG A +F S+ +N+VSW +I G M+G GKEA+E F +M+ + +
Sbjct: 348 DMYLKCGSXDEARXIFN--SMPERNVVSWNVMIVGLGMNGFGKEALECFXQMEMERIPMD 405
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+ FL VL ACSH LV EGL F++M + P ++HYGCL+D+LGRAG+L+Q + +
Sbjct: 406 DLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNII 465
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P + N +W +LL AC H NV + E V ++ E++ G YVLM NI A V +
Sbjct: 466 QSMPMK-PNAALWGSLLLACRIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMW 524
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
R+R+++ ER K GRS++
Sbjct: 525 EGMLRIRKLMKERKMKKDIGRSVI 548
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 126/262 (48%), Gaps = 36/262 (13%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I+ + GE +AR++F+ +++VSW ++ GY A +F M +
Sbjct: 149 NGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVV 208
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG--------FNAFHIH--VS-NCLIDT 129
S +I GYG+K G F++ VS N +ID
Sbjct: 209 SWS--------------------IMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDG 248
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
YAK G + A ++F+ + +KN++SW+ +I G+A H KEA+ F +M +KP+RV
Sbjct: 249 YAKVGEMEVAREIFBKML--QKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRV 306
Query: 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
+ + ++ACS G +++G ++ ++ +L DI L+DM + G ++A + +
Sbjct: 307 SVVGAVSACSQLGALDQG-RWIHLYMKRNRMLLDIVVQTALVDMYLKCGSXDEARXIFNS 365
Query: 250 IPSEITNVVVWRTLLGACSFHG 271
+P NVV W ++ +G
Sbjct: 366 MPER--NVVSWNVMIVGLGMNG 385
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 1 FLKDGSK-----LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV----VSW 51
+LK GS +F+ +PERN+V+WNVMI GL G + A F +M + + +
Sbjct: 350 YLKCGSXDEARXIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFXQMEMERIPMDDLLF 409
Query: 52 TGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
G++ + N L +F +M EP
Sbjct: 410 LGVLMACSHANLVTEGLHIFNQMKGVYRLEP 440
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/318 (39%), Positives = 191/318 (60%), Gaps = 4/318 (1%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
++ W+ M+ G + GE+ AR LF M R+V+SWT +I GY++ + + AL LF+ M
Sbjct: 279 KSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEM 338
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVR-NCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
A +P E+T++AV A + G +L H Y E FN I ++ ++D YAKC
Sbjct: 339 EALG-IKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTI-LTAAVMDMYAKC 396
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G I SAL++F + K + S+I+G A HG+G+ A+ F + LKP+ VTF+
Sbjct: 397 GSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVG 456
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VL AC H GL+EEG K F+ M + P ++HYGC++D+LGR G LE+A + +P E
Sbjct: 457 VLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFE 516
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
N V+WR LL AC HGNV++GE +K+LEME +G YVL+ NILA ++ +A ++
Sbjct: 517 -ANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQV 575
Query: 314 RRVVDERNALKFPGRSLV 331
R+V+++ K PG S +
Sbjct: 576 RKVMEDHGIRKPPGWSYI 593
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/337 (25%), Positives = 156/337 (46%), Gaps = 36/337 (10%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E +L N +I +G L AR+LF+E R++VS+ +I GY +N+ AL LF
Sbjct: 143 ESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGE 202
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHG--YGEKRGFNAFHIHVSNCLIDTYA 131
M P E T +A+F + + IH Y R ++ +I + + ++D YA
Sbjct: 203 MQNSGIL-PDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDS-NILLKSAIVDMYA 260
Query: 132 KCGCIFSALKLFE----------------------DISVERK--------NLVSWTSIIS 161
KCG I A ++F +I+V RK +++SWT++IS
Sbjct: 261 KCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMIS 320
Query: 162 GFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVL 221
G++ G EA+E F+ M+ + +KP+ VT ++VL+AC+ G + G + + + +E
Sbjct: 321 GYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFN 380
Query: 222 PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTR 281
+ ++DM + G ++ A ++ + + V+ +++ + HG E V R
Sbjct: 381 QNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFR 440
Query: 282 KILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVD 318
+++ G D V +L G E +++ +
Sbjct: 441 ELIST--GLKPDEVTFVGVLCACGHSGLIEEGKKLFE 475
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 120/254 (47%), Gaps = 5/254 (1%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
L+++R LF ++ C N+ W +I GY+R + A+ L+ M+A P+ T +
Sbjct: 60 LDHSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLN 119
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
+ + + +H + K GF + + V N LI Y+ G + A LF++ V ++
Sbjct: 120 SCARLSSLEPGHEVHSHIIKHGFES-DLFVRNALIHLYSVFGNLNLARTLFDESLV--RD 176
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
LVS+ ++I G+A + A+ F MQ + P+ TF+++ + CS G +
Sbjct: 177 LVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHA 236
Query: 213 KMVEECEVL-PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
++ + + +I ++DM + G + AE+V S + + + W +++ + G
Sbjct: 237 QVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTS-KSAAAWSSMVCGYARCG 295
Query: 272 NVEMGERVTRKILE 285
+ + ++ + E
Sbjct: 296 EINVARKLFNHMHE 309
>gi|125541284|gb|EAY87679.1| hypothetical protein OsI_09093 [Oryza sativa Indica Group]
Length = 493
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 126/325 (38%), Positives = 201/325 (61%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD +P R+ VT+N +I+GL++ G + A +F+ MP + VSWT +IDG + R +
Sbjct: 126 QLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDE 185
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ FR M+ + EP +T++AV A + G + +H ++G ++ ++N L
Sbjct: 186 AINCFRAML-LDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLER-NVRIANSL 243
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YA+CG + A ++F + ++ +VSW S+I GFA +G +AVE+FE M++ KP
Sbjct: 244 IDMYARCGQVELARQVFS--GMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKP 301
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ VTF VL ACSHGGL +EGL+++D M E + ++HYGC++D+LGR+GRLE+A +V
Sbjct: 302 DAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGRLEEAMRV 361
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ +P N VV LL C HG+V M E++ + +LE++ G +YVL+ NI A V +
Sbjct: 362 VTTMPMR-PNEVVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGK 420
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ A ++R ++ R K PG S V
Sbjct: 421 WDGAGKVRSLMKARGLRKRPGYSAV 445
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 103/251 (41%), Gaps = 36/251 (14%)
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF--HIHVSNCLIDTYAKCGCIFSA 139
P+++T+L V A + + + R F H+ +S CL+ Y A
Sbjct: 65 PNDVTLLTVLSACADSPSSPLARRLALSVHARVLKLFPSHLLLSTCLVRFYFASRLPHLA 124
Query: 140 LKLFEDISVER-----------------------------KNLVSWTSIISGFAMHGMGK 170
L+LF+ + V + VSWT++I G +G
Sbjct: 125 LQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHD 184
Query: 171 EAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCL 230
EA+ F M ++P+ VT ++V++AC+ G + G+ + ++V + +++ L
Sbjct: 185 EAINCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGM-WVHRLVVRQGLERNVRIANSL 243
Query: 231 IDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 290
IDM R G++E A +V SG+ VV W +++ F N + V G+
Sbjct: 244 IDMYARCGQVELARQVFSGMRKR--TVVSWNSMI--VGFAANGRCADAVEHFEAMRREGF 299
Query: 291 GGDYVLMYNIL 301
D V +L
Sbjct: 300 KPDAVTFTGVL 310
>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 550
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 117/328 (35%), Positives = 191/328 (58%), Gaps = 4/328 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + K+FD +P +N V+WN MI+G + AR LF+EMP R+ SW+ ++ GY+++
Sbjct: 192 IDEARKIFDLMPLKNTVSWNAMISGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQL 251
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
N AL LF MV + P+E +++ A Q + + +H Y +++ ++
Sbjct: 252 GMCNEALDLFMEMVTGDKMIPNEAALVSAVSACAQLRALEEGRWLHSYIKEKKLR-INVT 310
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ L+D Y KCG I A +F +S +N+ SW S+I+G A++G GKEA+ F +MQ
Sbjct: 311 LGTVLLDMYGKCGSILDAAGVFNLMS--ERNVNSWNSMIAGLALNGCGKEALALFWKMQF 368
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
V PN +TF+++L CSH GL+ EG F M + + P +KHYGC++D+LGRAG ++
Sbjct: 369 VGPSPNAITFIALLTGCSHSGLITEGRWLFSMMTQVYGIKPQLKHYGCMVDLLGRAGLVK 428
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A +P + + +W L+GAC HG VE+GE + ++++++E +GG Y L+ NI
Sbjct: 429 EALDFVEKMPMK-PHSELWGALVGACRIHGQVELGEELGKRLIDLEPHHGGRYALLCNIF 487
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRS 329
A R+ D +R + R LK PG +
Sbjct: 488 AAAQRWDDVAMVRDLEKGRKVLKNPGNN 515
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
Query: 90 VFPAIWQNGDVRNCQLI----HGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFED 145
FP + ++ L+ H + K G + + V N +I Y+ + SA K+F++
Sbjct: 111 TFPFLIKSSSASPTSLLGHQLHAHVVKFGLDR-DVFVVNNMIALYSSFRELRSARKVFDE 169
Query: 146 ISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVE 205
S ++VSWT++I+GF+ G EA + F+ M LK N V++ ++++ + +
Sbjct: 170 -SYSLVDVVSWTTLITGFSNSGQIDEARKIFDLMP---LK-NTVSWNAMISGYAGSSRIN 224
Query: 206 EGLKFFDKMVE 216
E K FD+M +
Sbjct: 225 EARKLFDEMPD 235
>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 642
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 119/331 (35%), Positives = 192/331 (58%), Gaps = 3/331 (0%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ D K+FD + R++ +WN ++ G K G ++ A ++FE MP RN+VSWT +I GY++
Sbjct: 185 INDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQS 244
Query: 62 NRSNGALALFRRMVACEY-TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+ AL+LF MV + P+ +TI++V PA Q + + IH + G N+ +
Sbjct: 245 GLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNS-NA 303
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V L YAKCG + A F+ ++ KNL++W ++I+ +A +G G +AV F M
Sbjct: 304 SVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMI 363
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ ++P+ +TF +L+ CSH GLV+ GLK+F+ M + P ++HY C+ D+LGRAGRL
Sbjct: 364 QAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRL 423
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
+A K+ +P +W +LL AC H N+EM E RK+ +E G+YVL+ N+
Sbjct: 424 AEASKLVGEMPMP-AGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNM 482
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ + ++LR +V + K PG S +
Sbjct: 483 YAEAGRWQEVDKLRAIVKSQGTKKSPGCSWI 513
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 105/235 (44%), Gaps = 37/235 (15%)
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV----------------- 148
+HG + G F ++V+ LI Y KCG I A K+F+++++
Sbjct: 156 VHGLILRIGLQ-FDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSG 214
Query: 149 ---------ER---KNLVSWTSIISGFAMHGMGKEAVENFERMQK--VVLKPNRVTFLSV 194
ER +N+VSWT++ISG++ G+ ++A+ F+ M K ++PN VT +SV
Sbjct: 215 CIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSV 274
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L AC+ +E G + + + + + L M + G L A +
Sbjct: 275 LPACAQLSTLERGRQIHE-LACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNE 333
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEM-ERGYGGDYVLMYNILAGVWRYG 308
N++ W T++ A + +G+ G + EM + G D + +L+G G
Sbjct: 334 KNLIAWNTMITAYASYGH---GLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSG 385
>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
Length = 582
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 121/330 (36%), Positives = 190/330 (57%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L DG L + T+N +IT + G L AR+LF+EMP RN VSW+ +++GY +
Sbjct: 128 LADGLLLLRTAAAVDASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQA 187
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL +F RM A E P + ++ V A Q+G + + +HGY + G ++
Sbjct: 188 GDGREALRIFARMQA-EDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIK-INLF 245
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
L+D Y+KCG + A+ +FE ++ KN+++WT++I G AMHG G EAV F +M+
Sbjct: 246 FGTALVDMYSKCGEVQLAMDVFE--RMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMES 303
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++P+ + F+ VL AC+H GLV++G + FD MV + + P I+HYGC++D+L R G L
Sbjct: 304 SGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLY 363
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A+++ +P E + ++W L+ C FH NVE E V + + +E G YVL+ NI
Sbjct: 364 EAKEMIQKMPME-PDALIWGALMAGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIY 422
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ A +R ++ E+ K PG S V
Sbjct: 423 AASGRHASAREIRHLMREKGVDKTPGCSTV 452
>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
Length = 604
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 123/323 (38%), Positives = 190/323 (58%), Gaps = 15/323 (4%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FD +P R++V+WN MI G +K GE+E A LF+EMP R++VS +IDGY + S G
Sbjct: 165 RVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKEMLSLG 224
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
P I++V AI G V + +H Y + + L
Sbjct: 225 -------------LRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSAL 271
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y+KCG I +A +F IS R+N+ W S+ISG A+HG+ +EA++ F M+++ ++P
Sbjct: 272 IDMYSKCGYIENAYHVFRSIS-HRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEP 330
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N +TFL +L+ CSHGGLVEEG +F+ M E+ +++P I+HYGC+ID+ GRAGRLE A V
Sbjct: 331 NEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGV 390
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E +++ W+ +L A HG++E+G+ + +E+ YVL+ NI A R
Sbjct: 391 IQNMPFE-ADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGR 449
Query: 307 YGDAERLRRVVDERNALKFPGRS 329
+ D ++R ++ +R K G S
Sbjct: 450 WDDVAKIRLMMRQRGVKKIAGCS 472
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 139/312 (44%), Gaps = 40/312 (12%)
Query: 7 KLFDELPERNLVTWNVMITGLVKW-------GELEYARSLFEEMPCRNVVSWTGIIDGYT 59
++ ++ + NL+ ++ L+ + G L+YA S+F + N + +I G++
Sbjct: 24 QIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKGFS 83
Query: 60 RMNRSNGALALFRRMVAC-EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG--FN 116
+ +L L+ RM++C Y+ E +I +V A + + +HG K F+
Sbjct: 84 DTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFD 143
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
F V N ++ Y G I A ++F+ + +++VSW S+I+G+ G + A E F
Sbjct: 144 PF---VGNSMVRMYIDFGEIELARRVFD--RMPNRDVVSWNSMIAGYLKAGEIELASELF 198
Query: 177 ERMQK-------------------VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE 217
+ M + + L+P+ +SVL+A + G VEEG K+ V
Sbjct: 199 DEMPERDLVSCNAMIDGYGKEMLSLGLRPDGPAIVSVLSAIADLGFVEEG-KWLHAYVSM 257
Query: 218 CEVLPDIKHYG-CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMG 276
++ G LIDM + G +E A V I S N+ W +++ + HG +
Sbjct: 258 NKIELSSGFIGSALIDMYSKCGYIENAYHVFRSI-SHRRNIGDWNSMISGLAIHG---LA 313
Query: 277 ERVTRKILEMER 288
+EMER
Sbjct: 314 REALDIFVEMER 325
>gi|125595888|gb|EAZ35668.1| hypothetical protein OsJ_19954 [Oryza sativa Japonica Group]
Length = 510
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 121/331 (36%), Positives = 199/331 (60%), Gaps = 3/331 (0%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L + K+FDEL R+ +N +++ K G ++ A LFEEMP RNVVSWT ++ GY +
Sbjct: 137 LLVEARKVFDELTCRDTAVYNALLSAYAKGGLVDSAEKLFEEMPDRNVVSWTAMVSGYAQ 196
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
R A+ F M +P+E+T+ +V PA G + + + Y +G ++
Sbjct: 197 NGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVGAMELGRKVEEYARGKGL-LRNV 255
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+V+N L++ Y+KCG I A ++F+ I +++L SW S+I FA+HG+ +EA+ F +++
Sbjct: 256 YVANALLEMYSKCGSIRQAWQVFQGIG-RQQDLCSWNSMIMAFAVHGLWREALALFYKLR 314
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+KP+ +TF+ V+ AC+HGGLV EG FFD M E + P I+HYGC++D+LGRAG L
Sbjct: 315 MAGVKPDGITFVGVILACTHGGLVNEGKLFFDSMEAEFSLKPRIEHYGCMVDLLGRAGLL 374
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
++ + + +P E + V+W LLGACSFHGNVE+ E K++ +E + V++ NI
Sbjct: 375 IESYSLIASMPVE-PDAVIWGALLGACSFHGNVELAELAMDKLIHLEPQNTANLVILSNI 433
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ ++ +++ E++ K G S +
Sbjct: 434 YASSGKWDGVAQVWKLLKEKDHKKSAGYSFI 464
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 91/180 (50%), Gaps = 32/180 (17%)
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDI----------------------SVER-------KN 152
+S+ L+ YAK + A K+F+++ S E+ +N
Sbjct: 124 LSSALVSFYAKSKLLVEARKVFDELTCRDTAVYNALLSAYAKGGLVDSAEKLFEEMPDRN 183
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
+VSWT+++SG+A +G +EAVE F M ++ ++PN +T SVL AC+ G +E G K
Sbjct: 184 VVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVGAMELGRK-V 242
Query: 212 DKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
++ +L ++ L++M + G + QA +V GI + ++ W +++ A + HG
Sbjct: 243 EEYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQ-QDLCSWNSMIMAFAVHG 301
>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Cucumis sativus]
Length = 679
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 119/331 (35%), Positives = 192/331 (58%), Gaps = 3/331 (0%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ D K+FD + R++ +WN ++ G K G ++ A ++FE MP RN+VSWT +I GY++
Sbjct: 222 INDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQS 281
Query: 62 NRSNGALALFRRMVACEY-TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+ AL+LF MV + P+ +TI++V PA Q + + IH + G N+ +
Sbjct: 282 GLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNS-NA 340
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V L YAKCG + A F+ ++ KNL++W ++I+ +A +G G +AV F M
Sbjct: 341 SVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMI 400
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ ++P+ +TF +L+ CSH GLV+ GLK+F+ M + P ++HY C+ D+LGRAGRL
Sbjct: 401 QAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRL 460
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
+A K+ +P +W +LL AC H N+EM E RK+ +E G+YVL+ N+
Sbjct: 461 AEASKLVGEMPMP-AGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNM 519
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ + ++LR +V + K PG S +
Sbjct: 520 YAEAGRWQEVDKLRAIVKSQGTKKSPGCSWI 550
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 137/318 (43%), Gaps = 38/318 (11%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
M+ G+++ + S+F + + + + +I Y R + +A + M + +T
Sbjct: 111 MVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTG- 169
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
T V + + V + +HG + G F ++V+ LI Y KCG I A K+
Sbjct: 170 DYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQ-FDLYVATSLIILYGKCGEINDAGKV 228
Query: 143 FEDISV--------------------------ER---KNLVSWTSIISGFAMHGMGKEAV 173
F+++++ ER +N+VSWT++ISG++ G+ ++A+
Sbjct: 229 FDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQAL 288
Query: 174 ENFERMQK--VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLI 231
F+ M K ++PN VT +SVL AC+ +E G + + + + + L
Sbjct: 289 SLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHE-LACRMGLNSNASVLIALT 347
Query: 232 DMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM-ERGY 290
M + G L A + N++ W T++ A + +G+ G + EM + G
Sbjct: 348 AMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGH---GLQAVSTFREMIQAGI 404
Query: 291 GGDYVLMYNILAGVWRYG 308
D + +L+G G
Sbjct: 405 QPDDITFTGLLSGCSHSG 422
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 122/324 (37%), Positives = 195/324 (60%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFD +PER+LV+WN MI G G++ A+ LF+ R+++SW+ +I Y + +SN A
Sbjct: 193 LFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEA 252
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LF M P ++T+++V A G + ++IH E+ + + L+
Sbjct: 253 LRLFHEMQLANVL-PDKVTMVSVLSACGDVGALGMGKMIHECIERNRIE-IDLKLGTSLV 310
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D YAKCG I ++L++F + +++ +W+++I G A HG G+ A+++F +M +KPN
Sbjct: 311 DMYAKCGDIDNSLRVFN--GMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPN 368
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
VTF+ VL+ACSH GLV+EG +F M + +V P I+HYGC++D+LGRAGRL++A ++
Sbjct: 369 DVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELI 428
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P + +VWR LLGAC + NVE+ E T +LE+E G+YVL+ NI + +
Sbjct: 429 KSMPFA-PDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEW 487
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
+RR++ N K PG S +
Sbjct: 488 DKVVNVRRMMKNINIQKVPGSSSI 511
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 123/310 (39%), Gaps = 72/310 (23%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
+L YARS+F+E+P + W +I Y +++LF +M E ++ V
Sbjct: 52 NDLLYARSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLV 111
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS--- 147
A + D N Q +H K G + + V LI+ YAK G I A + ++++
Sbjct: 112 IQACGRLKDPGNGQKLHTQVLKIGLGS-DLFVETALIEMYAKFGDIEIARNILDEMAHPD 170
Query: 148 --------------------------VERKNLVSWTSIISGFAMHG-------------- 167
+ ++LVSW ++I G A G
Sbjct: 171 LVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCE 230
Query: 168 -----------------MGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
EA+ F MQ + P++VT +SVL+AC G + G
Sbjct: 231 RDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMG--- 287
Query: 211 FDKMVEEC----EVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
KM+ EC + D+K L+DM + G ++ + +V +G+ + +V W ++
Sbjct: 288 --KMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNR--DVFAWSAMIMG 343
Query: 267 CSFHGNVEMG 276
+ HG E+
Sbjct: 344 LANHGFGELA 353
>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 124/320 (38%), Positives = 200/320 (62%), Gaps = 9/320 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEM--PCRNVVSWTGIIDGYTRMNRSNGALALF 71
+ N+ +I + +++ AR +F+ + PC VV + +I GY R NR N AL+LF
Sbjct: 163 DDNVYVCPTLINMYTECEDVDAARCVFDRIVEPC--VVCYNAMITGYARRNRPNEALSLF 220
Query: 72 RRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYA 131
R M + +P+EIT+L+V + G + + IH Y +K GF + + V+ LID +A
Sbjct: 221 REMQG-KNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKY-VKVNTALIDMFA 278
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191
KCG + A+ +FE++ K+ +W+++I +A HG + ++ FERM+ ++P+ +TF
Sbjct: 279 KCGSLDDAVSIFENM--RYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEITF 336
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
L +LNACSH GLVEEG ++F MV E ++P IKHYG ++D+LGRAG LE A + +P
Sbjct: 337 LGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAYEFIDKLP 396
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
T ++WR LL ACS H N+E+ E+V+ +ILE++ +GGDYV++ N+ A ++ +
Sbjct: 397 ISPTP-MLWRILLAACSSHNNLELAEKVSERILELDDSHGGDYVILSNLYARNKKWEAVD 455
Query: 312 RLRRVVDERNALKFPGRSLV 331
LR+V+ +R A+K PG S +
Sbjct: 456 SLRKVMKDRKAVKVPGCSSI 475
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 116/249 (46%), Gaps = 17/249 (6%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALF-----RRMVACEYTEPSEI 85
+ YAR LF+ M ++V + I GY+R LF ++ YT PS +
Sbjct: 79 SSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLL 138
Query: 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFED 145
AV A+ + + +H K G + +++V LI+ Y +C + +A +F+
Sbjct: 139 KACAVAKALEEG------RQLHCLSMKLGVDD-NVYVCPTLINMYTECEDVDAARCVFDR 191
Query: 146 ISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVE 205
I +V + ++I+G+A EA+ F MQ LKPN +T LSVL++C+ G ++
Sbjct: 192 IV--EPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLD 249
Query: 206 EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
G K+ + ++ +K LIDM + G L+ A + + + T W ++
Sbjct: 250 LG-KWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQ--AWSAMIV 306
Query: 266 ACSFHGNVE 274
A + HG E
Sbjct: 307 AYANHGQAE 315
>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Vitis vinifera]
Length = 515
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 119/330 (36%), Positives = 203/330 (61%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D ++F+E+ ER+ V+WN +I+G V+ G++ AR++FEE+ + + SWT I+ GY R+
Sbjct: 142 LDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEELQDKTIFSWTAIVSGYARI 201
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL FRRM + E EI++++V PA Q G + + IH Y +K GF I
Sbjct: 202 GCHAVALEFFRRMQMVD-IELDEISLVSVLPACAQLGALELGKWIHIYADKAGF-LRDIC 259
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LI+ YAK G + +LF ++ ++++SW+++I G A HG +EA+E F+ MQK
Sbjct: 260 VCNALIEVYAKRGSMDEGRRLFHKMN--ERDVISWSTMIVGLANHGRAREAIELFQEMQK 317
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++PN +TF+ +L+AC+H GL+ EGL +F+ M + + P ++HYGCL+++LG +GRL+
Sbjct: 318 AKVEPNIITFVGLLSACAHAGLLNEGLGYFESMERDDNIEPGVEHYGCLVNLLGLSGRLD 377
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
QA ++ +P + + +W L +C HGN+E+ +LE+E G+Y+ + N+
Sbjct: 378 QALELIKKMPMK-PDSDIWGLLSSSCRSHGNLEIVAIAMEHLLELEPDDTGNYITLSNLY 436
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + ++ R+R+++ + K PG S +
Sbjct: 437 ADLGKWDGVSRMRKLMSSKYMNKTPGCSSI 466
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 122/274 (44%), Gaps = 37/274 (13%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
GE EYA LF+ + N + +I Y A+ + ++M+ + E
Sbjct: 34 GETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYILAITVHKQMLGHSHGENPXFPDKFT 93
Query: 91 FPAIWQNGDVRNC----QLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI 146
FP + + C + +HG+ K G + + + N L++ Y KC + A ++FE++
Sbjct: 94 FPFVVKXCAGLMCYNLGKQVHGHAFKFGPKSNTV-IENSLVEMYVKCDSLDDAHRVFEEM 152
Query: 147 S-----------------------------VERKNLVSWTSIISGFAMHGMGKEAVENFE 177
+ ++ K + SWT+I+SG+A G A+E F
Sbjct: 153 TERDAVSWNTLISGHVRLGQMRRARAIFEELQDKTIFSWTAIVSGYARIGCHAVALEFFR 212
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
RMQ V ++ + ++ +SVL AC+ G +E G K+ ++ L DI LI++ +
Sbjct: 213 RMQMVDIELDEISLVSVLPACAQLGALELG-KWIHIYADKAGFLRDICVCNALIEVYAKR 271
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
G +++ ++ + +V+ W T++ + HG
Sbjct: 272 GSMDEGRRLFHKMNER--DVISWSTMIVGLANHG 303
>gi|6983870|dbj|BAA90805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125553873|gb|EAY99478.1| hypothetical protein OsI_21446 [Oryza sativa Indica Group]
Length = 510
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 121/331 (36%), Positives = 199/331 (60%), Gaps = 3/331 (0%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L + K+FDEL R+ +N +++ K G ++ A LFEEMP RNVVSWT ++ GY +
Sbjct: 137 LLVEARKVFDELTCRDTAVYNALLSAYAKGGLVDSAEKLFEEMPDRNVVSWTAMVSGYAQ 196
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
R A+ F M +P+E+T+ +V PA G + + + Y +G ++
Sbjct: 197 NGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVGAMELGRKVEEYARGKGL-LRNV 255
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+V+N L++ Y+KCG I A ++F+ I +++L SW S+I FA+HG+ +EA+ F +++
Sbjct: 256 YVANALLEMYSKCGSIRQAWQVFQGIG-RQQDLCSWNSMIMAFAVHGLWREALALFYKLR 314
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+KP+ +TF+ V+ AC+HGGLV EG FFD M E + P I+HYGC++D+LGRAG L
Sbjct: 315 MAGVKPDGITFVGVILACTHGGLVNEGKLFFDSMEAEFSLKPRIEHYGCMVDLLGRAGLL 374
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
++ + + +P E + V+W LLGACSFHGNVE+ E K++ +E + V++ NI
Sbjct: 375 IESYSLIASMPVE-PDAVIWGALLGACSFHGNVELAELAMDKLIHLEPQNTANLVILSNI 433
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ ++ +++ E++ K G S +
Sbjct: 434 YASSGKWDGVAQVWKLLKEKDHKKSAGYSFI 464
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 91/180 (50%), Gaps = 32/180 (17%)
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDI----------------------SVER-------KN 152
+S+ L+ YAK + A K+F+++ S E+ +N
Sbjct: 124 LSSALVSFYAKSKLLVEARKVFDELTCRDTAVYNALLSAYAKGGLVDSAEKLFEEMPDRN 183
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
+VSWT+++SG+A +G +EAVE F M ++ ++PN +T SVL AC+ G +E G K
Sbjct: 184 VVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVGAMELGRK-V 242
Query: 212 DKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
++ +L ++ L++M + G + QA +V GI + ++ W +++ A + HG
Sbjct: 243 EEYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQ-QDLCSWNSMIMAFAVHG 301
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/324 (37%), Positives = 195/324 (60%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFD + ++ LV+W M+ G ++G L+ AR + ++P ++VV W II G + + A
Sbjct: 316 LFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEA 375
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
LALF M EP ++T++ A Q G + IH Y E+ + + + L+
Sbjct: 376 LALFHEM-QIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKL-SIDVALGTALV 433
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D YAKCG I AL++FE+I ++N ++WT++I G A+HG ++A+ F +M + + P+
Sbjct: 434 DMYAKCGNIARALQVFEEIP--QRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPD 491
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TFL VL+AC HGGLVEEG K+F +M + V P +KHY C++D+LGRAG LE+AE++
Sbjct: 492 EITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELV 551
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P + V L AC +GNV++GER K+LE++ G+YVL+ ++ + +
Sbjct: 552 KNMPMA-ADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMW 610
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
+A R++++++ K PG SLV
Sbjct: 611 KEARSARKLMNDKGVEKTPGCSLV 634
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 161/340 (47%), Gaps = 40/340 (11%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E ++ N IT L+ GEL A +F + R++V+W +I G + + A+ +++
Sbjct: 190 ECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKE 249
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M A E P+EIT++ + + Q D+ + H Y ++ G F I ++N L+D Y KC
Sbjct: 250 MEA-EKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLE-FTIPLTNALMDMYVKC 307
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM------------------------- 168
G + +A LF++++ +K LVSWT+++ G+A G
Sbjct: 308 GELLTARVLFDNMA--QKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISG 365
Query: 169 ------GKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP 222
GKEA+ F MQ ++P++VT ++ L+ACS G ++ G+ + +E ++
Sbjct: 366 CVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGI-WIHHYIERHKLSI 424
Query: 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRK 282
D+ L+DM + G + +A +V IP N + W ++ + HGN + K
Sbjct: 425 DVALGTALVDMYAKCGNIARALQVFEEIPQR--NCLTWTAVICGLALHGNAQDALSYFSK 482
Query: 283 ILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNA 322
++ + G D + +L+ G E R+ E ++
Sbjct: 483 MIHI--GIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSS 520
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 82/347 (23%), Positives = 139/347 (40%), Gaps = 67/347 (19%)
Query: 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTE 81
V L + EL+Y + + NV SW I GY G L++RM+ +
Sbjct: 96 VAFCALSESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLK 155
Query: 82 PSEITILAVFPAIWQN--GDVRNCQL--IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIF 137
P T +P + + G +C + G+ K GF I V N I CG +
Sbjct: 156 PDNHT----YPLLLKGCCGQYSSCLGLGVLGHVLKFGFEC-DIFVHNASITMLLSCGELS 210
Query: 138 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197
A +F V ++LV+W S+I+G G+ EA++ ++ M+ ++PN +T + ++++
Sbjct: 211 VAYDVFNKSRV--RDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISS 268
Query: 198 CS-----------HGGLVEEGLKF------------------------FDKMVEECEVLP 222
CS H + E GL+F FD M ++ V
Sbjct: 269 CSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLV-- 326
Query: 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRK 282
+ ++ R G L+ A ++ IP + +VV W ++ C + G+
Sbjct: 327 ---SWTTMVLGYARFGFLDVAREILYKIPEK--SVVPWNAIISGCV---QAKQGKEALAL 378
Query: 283 ILEME-RGYGGDYVLMYNILA----------GVWRYGDAERLRRVVD 318
EM+ R D V M N L+ G+W + ER + +D
Sbjct: 379 FHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSID 425
>gi|125540362|gb|EAY86757.1| hypothetical protein OsI_08137 [Oryza sativa Indica Group]
Length = 493
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 119/324 (36%), Positives = 189/324 (58%), Gaps = 4/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
FD +PE+N+V+WN M+ + G L AR LF+ MP RN +W +I G + + A
Sbjct: 161 FFDAMPEKNVVSWNTMLGAYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEA 220
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L +F MVAC P+E +++ A Q + + +HGY E+ A ++ ++
Sbjct: 221 LRVFSDMVACGVV-PNEPALVSTVSACTQLRWMEHGTWVHGYAERELNGAMSAVLATAIV 279
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y KCG I A+++F + V +N+ SW S+I+G AM+G ++A+ F +MQ ++PN
Sbjct: 280 DMYGKCGSIRDAVRVFAAMPV--RNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPN 337
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TF+ +L+ACSH GLV+EG F KMV + P +HYG ++D+LGR+G + +A
Sbjct: 338 DITFIGLLSACSHSGLVDEGRWLFYKMVNHFGIQPVPEHYGLMVDLLGRSGHVREAVDFV 397
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P E + +W L GAC HG VE+GE V +K++E+E +G Y+L+ NI A R+
Sbjct: 398 KSMPVE-PHPGLWGALAGACKIHGEVELGEEVAKKLIELEPQHGSRYILLSNIYATSNRW 456
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
D +RR++ +R K G ++V
Sbjct: 457 DDMANVRRILKDRKVPKGTGNAIV 480
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 73/148 (49%), Gaps = 10/148 (6%)
Query: 103 CQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISG 162
++H + G +A ++V N Y + SA +LF + S + ++V+WT++++G
Sbjct: 90 ASVVHSLAVRLG-HARDVYVVNAAASAYFAAADVASAERLFSEASRDVADVVTWTTMVTG 148
Query: 163 FAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP 222
A G + A F+ M + N V++ ++L A + G++ + K FD+M
Sbjct: 149 HANAGDVERARWFFDAMP----EKNVVSWNTMLGAYARAGMLPKARKLFDRMPSR----- 199
Query: 223 DIKHYGCLIDMLGRAGRLEQAEKVASGI 250
+ +G +I L ++ E+A +V S +
Sbjct: 200 NAATWGSMITGLLQSDHCEEALRVFSDM 227
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV----VSWTGIIDG 57
++D ++F +P RN+ +WN MI GL G A SLF +M V +++ G++
Sbjct: 288 IRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPNDITFIGLLSA 347
Query: 58 YTRMNRSNGALALFRRMV 75
+ + LF +MV
Sbjct: 348 CSHSGLVDEGRWLFYKMV 365
>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
Length = 655
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 125/323 (38%), Positives = 195/323 (60%), Gaps = 5/323 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
KL++E+P ++LV+ M++G + ++E ARS+F+ MP ++VVSW+ +I GY N+ N
Sbjct: 307 KLYNEMPRKDLVSSTAMVSGYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNE 366
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL+LF M C EIT+L+V A G + + IH + + G N +H+ N L
Sbjct: 367 ALSLFNGMQECG-IRSDEITMLSVISACANLGSLDKAKWIHAFIKNSGLNKV-LHICNAL 424
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID +AKCG I AL +F ++ + KN+++WTS+IS FAMHG GK ++ FE+M+ +P
Sbjct: 425 IDMFAKCGGINLALNVFNEMPL--KNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEP 482
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N VTFLS+L AC H GLV EG F MV++ + P +HYGC++D+LGRA +++A +
Sbjct: 483 NEVTFLSLLYACCHAGLVHEGRLLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVSL 542
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ E NV +W +LL AC HG++++G +KIL+++ + G VL+ I
Sbjct: 543 IESMHLE-PNVPIWGSLLAACWMHGDLKLGAFAAKKILQLDPNHDGASVLLLKIYMKSDN 601
Query: 307 YGDAERLRRVVDERNALKFPGRS 329
+A+ +R V+ K G S
Sbjct: 602 LNNAQEVRGVMKLHRVSKETGLS 624
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 121/265 (45%), Gaps = 34/265 (12%)
Query: 37 RSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQ 96
R +F+ M R+VVSW ++D Y + AL LF +M P ++ + V PA
Sbjct: 205 RKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLLFAKMKNSGVV-PDQLILATVLPACGH 263
Query: 97 NGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS--------- 147
+R + IH Y H+S+ LI YA C + A KL+ ++
Sbjct: 264 IRHLRIGKAIHSYMLVSDM-IIGAHISSALISLYASCANMEMAEKLYNEMPRKDLVSSTA 322
Query: 148 --------------------VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
+ K++VSW+++ISG+ EA+ F MQ+ ++ +
Sbjct: 323 MVSGYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLFNGMQECGIRSD 382
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+T LSV++AC++ G +++ K+ ++ + + LIDM + G + A V
Sbjct: 383 EITMLSVISACANLGSLDKA-KWIHAFIKNSGLNKVLHICNALIDMFAKCGGINLALNVF 441
Query: 248 SGIPSEITNVVVWRTLLGACSFHGN 272
+ +P + NV+ W +++ A + HG+
Sbjct: 442 NEMP--LKNVITWTSMISAFAMHGD 464
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V L YA CGC+ K+F+ ++V +++VSW ++ + KEA+ F +M+
Sbjct: 187 VGTALAGAYAACGCVRDTRKVFDGMAV--RDVVSWGVMLDSYCQTRNYKEALLLFAKMKN 244
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ P+++ +VL AC H + G M+ +++ LI + +E
Sbjct: 245 SGVVPDQLILATVLPACGHIRHLRIGKAIHSYMLVS-DMIIGAHISSALISLYASCANME 303
Query: 242 QAEKVASGIP 251
AEK+ + +P
Sbjct: 304 MAEKLYNEMP 313
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/324 (37%), Positives = 197/324 (60%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+F + R++++W +++G GE++ AR+ F++MP ++ VSWT +IDGY R NR A
Sbjct: 297 IFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEA 356
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LFR M A +P E T+++V A G + + I Y ++ + V N LI
Sbjct: 357 LELFRNMQATN-VKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKN-DLFVRNALI 414
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y KCG + A +F ++S +++ +WT++I G A++G G++A++ F M K + P+
Sbjct: 415 DMYFKCGDVDKAESIFREMS--QRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPD 472
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+T++ VL+AC+H GLV++G K+F +M + + P+I HYGCL+D+L RAGRL++A +V
Sbjct: 473 EITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVI 532
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P + N +VW LL C + +M E V ++ILE+E G YVL+ NI A R+
Sbjct: 533 ENMPIK-ANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRW 591
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
D LR+++ ++ K PG SL+
Sbjct: 592 NDLRELRQMMMDKGIKKXPGCSLI 615
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 132/278 (47%), Gaps = 13/278 (4%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
++G+ +YAR LF+E+P N+ W +I GY+R++ ++L+ M+ +P T
Sbjct: 85 EYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLR-RGVKPDRYTFP 143
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
+F ++ + + +HG+ K G +++ V L+ Y CG + +A +F+
Sbjct: 144 FLFKGFTRDIALEYGRQLHGHVLKHGLQ-YNVFVHTALVQMYLLCGQLDTARGVFD--VC 200
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
+ ++++W IIS + G +E+ F M+ + P VT + VL+ACS + G
Sbjct: 201 PKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGK 260
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
K V+ C+V ++ +IDM G ++ A + + + +++ W T++ +
Sbjct: 261 KVH-SYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNR--DIISWTTIVSGFT 317
Query: 269 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
G +++ K+ E DYV ++ G R
Sbjct: 318 NLGEIDVARNYFDKMPE------KDYVSWTAMIDGYIR 349
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/324 (37%), Positives = 197/324 (60%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+F + R++++W +++G GE++ AR+ F++MP ++ VSWT +IDGY R NR A
Sbjct: 276 IFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEA 335
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LFR M A +P E T+++V A G + + I Y ++ + V N LI
Sbjct: 336 LELFRNMQATN-VKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKN-DLFVRNALI 393
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y KCG + A +F ++S +++ +WT++I G A++G G++A++ F M K + P+
Sbjct: 394 DMYFKCGDVDKAESIFREMS--QRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPD 451
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+T++ VL+AC+H GLV++G K+F +M + + P+I HYGCL+D+L RAGRL++A +V
Sbjct: 452 EITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVI 511
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P + N +VW LL C + +M E V ++ILE+E G YVL+ NI A R+
Sbjct: 512 ENMPIK-ANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRW 570
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
D LR+++ ++ K PG SL+
Sbjct: 571 NDLRELRQMMMDKGIKKTPGCSLI 594
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 132/278 (47%), Gaps = 13/278 (4%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
++G+ +YAR LF+E+P N+ W +I GY+R++ ++L+ M+ +P T
Sbjct: 64 EYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLR-RGVKPDRYTFP 122
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
+F ++ + + +HG+ K G +++ V L+ Y CG + +A +F+
Sbjct: 123 FLFKGFTRDIALEYGRQLHGHVLKHGLQ-YNVFVHTALVQMYLLCGQLDTARGVFD--VC 179
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
+ ++++W IIS + G +E+ F M+ + P VT + VL+ACS + G
Sbjct: 180 PKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGK 239
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
K V+ C+V ++ +IDM G ++ A + + + +++ W T++ +
Sbjct: 240 KVH-SYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNR--DIISWTTIVSGFT 296
Query: 269 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
G +++ K+ E DYV ++ G R
Sbjct: 297 NLGEIDVARNYFDKMPE------KDYVSWTAMIDGYIR 328
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/327 (36%), Positives = 196/327 (59%), Gaps = 4/327 (1%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
KLFDE+ R++V+WN +I+G G ++ AR +F+ M +N+VSW+ +I GY R +
Sbjct: 181 AQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKY 240
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
A+ LFR+M P+++T+++V A G + + IH + + + + N
Sbjct: 241 ADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEV-GLFLGN 299
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
L D YAKCGC+ A +F ++ ++++SW+ II G AM+G EA F M + L
Sbjct: 300 ALADMYAKCGCVLEAKGVFHEM--HERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGL 357
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
+PN ++F+ +L AC+H GLV++GL++FD M + + P I+HYGC++D+L RAGRL+QAE
Sbjct: 358 EPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAE 417
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+ + +P + NV+VW LLG C + + E GERV +ILE++ + G V + N+ A +
Sbjct: 418 SLINSMPMQ-PNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASM 476
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
R DA R + + ++K PG S +
Sbjct: 477 GRLDDAASCRLRMRDNKSMKTPGCSWI 503
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 126/273 (46%), Gaps = 36/273 (13%)
Query: 31 GELEYARSLFEE-MPCRNVVSWTGIIDGYTRMNRSNGALALFR-RMVACEYTEPSEITIL 88
G L ++ +F + N+ ++ ++ +++ N + ++ F ++V P E T
Sbjct: 72 GNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFT 131
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
+V A V Q +H + K G + ++ V N L+D Y K GC A KLF+++ V
Sbjct: 132 SVLKACAGLAQVLEGQKVHCFVTKYGCES-NLFVRNSLVDLYFKVGCNCIAQKLFDEMVV 190
Query: 149 E-----------------------------RKNLVSWTSIISGFAMHGMGKEAVENFERM 179
KNLVSW+++ISG+A + +A+E F +M
Sbjct: 191 RDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQM 250
Query: 180 Q-KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
Q + L PN VT +SVL+AC+H G ++ G K+ + + ++ + L DM + G
Sbjct: 251 QHEGGLAPNDVTLVSVLSACAHLGALDLG-KWIHRFIRRNKIEVGLFLGNALADMYAKCG 309
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ +A+ V + +V+ W ++ + +G
Sbjct: 310 CVLEAKGVFHEMHER--DVISWSIIIMGLAMYG 340
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/324 (37%), Positives = 195/324 (60%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFD + ++ LV+W M+ G ++G L+ AR + ++P ++VV W II G + + A
Sbjct: 316 LFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEA 375
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
LALF M EP ++T++ A Q G + IH Y E+ + + + L+
Sbjct: 376 LALFHEM-QIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKL-SIDVALGTALV 433
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D YAKCG I AL++FE+I ++N ++WT++I G A+HG ++A+ F +M + + P+
Sbjct: 434 DMYAKCGNIARALQVFEEIP--QRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPD 491
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TFL VL+AC HGGLVEEG K+F +M + V P +KHY C++D+LGRAG LE+AE++
Sbjct: 492 EITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELV 551
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P + V L AC +GNV++GER K+LE++ G+YVL+ ++ + +
Sbjct: 552 KNMPMA-ADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMW 610
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
+A R++++++ K PG SLV
Sbjct: 611 KEARSARKLMNDKGVEKTPGCSLV 634
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 161/340 (47%), Gaps = 40/340 (11%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E ++ N IT L+ GEL A +F + R++V+W +I G + + A+ +++
Sbjct: 190 ECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKE 249
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M A E P+EIT++ + + Q D+ + H Y ++ G F I ++N L+D Y KC
Sbjct: 250 MEA-EKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLE-FTIPLTNALMDMYVKC 307
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM------------------------- 168
G + +A LF++++ +K LVSWT+++ G+A G
Sbjct: 308 GELLTARVLFDNMA--QKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISG 365
Query: 169 ------GKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP 222
GKEA+ F MQ ++P++VT ++ L+ACS G ++ G+ + +E ++
Sbjct: 366 CVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGI-WIHHYIERHKLSI 424
Query: 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRK 282
D+ L+DM + G + +A +V IP N + W ++ + HGN + K
Sbjct: 425 DVALGTALVDMYAKCGNIARALQVFEEIPQR--NCLTWTAVICGLALHGNAQDALSYFSK 482
Query: 283 ILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNA 322
++ + G D + +L+ G E R+ E ++
Sbjct: 483 MIHI--GIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSS 520
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 82/347 (23%), Positives = 139/347 (40%), Gaps = 67/347 (19%)
Query: 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTE 81
V L + EL+Y + + NV SW I GY G L++RM+ +
Sbjct: 96 VAFCALSESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLK 155
Query: 82 PSEITILAVFPAIWQN--GDVRNCQL--IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIF 137
P T +P + + G +C + G+ K GF I V N I CG +
Sbjct: 156 PDNHT----YPLLLKGCCGQYSSCLGLGVLGHVLKFGFEC-DIFVHNASITMLLSCGELS 210
Query: 138 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197
A +F V ++LV+W S+I+G G+ EA++ ++ M+ ++PN +T + ++++
Sbjct: 211 VAYDVFNKSRV--RDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISS 268
Query: 198 CS-----------HGGLVEEGLKF------------------------FDKMVEECEVLP 222
CS H + E GL+F FD M ++ V
Sbjct: 269 CSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLV-- 326
Query: 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRK 282
+ ++ R G L+ A ++ IP + +VV W ++ C + G+
Sbjct: 327 ---SWTTMVLGYARFGFLDVAREILYKIPEK--SVVPWNAIISGCV---QAKQGKEALAL 378
Query: 283 ILEME-RGYGGDYVLMYNILA----------GVWRYGDAERLRRVVD 318
EM+ R D V M N L+ G+W + ER + +D
Sbjct: 379 FHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSID 425
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 123/330 (37%), Positives = 198/330 (60%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L +LF+ R++V+WN MI G VK E+ +AR +F+ M CR+V+SW +I+GY
Sbjct: 217 LGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIC 276
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ N ALALF +M A +P+E T++++ A G + +H Y I
Sbjct: 277 GKPNEALALFDQMRAVG-VKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSI- 334
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V L+D YAKCG I A ++F ++E K++++W +II+G A+HG KEA + F+ M++
Sbjct: 335 VGTALVDMYAKCGKISLATQVFN--AMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKE 392
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++PN +TF+++L+ACSH G+V+EG K D M + P ++HYGC+ID+L RAG LE
Sbjct: 393 AGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLE 452
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++ +P E N LLG C HGN E+GE V ++++ ++ + G Y+L+ NI
Sbjct: 453 EAMELIGTMPME-PNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIY 511
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ DA ++R ++ K PG S++
Sbjct: 512 AAAKKWDDARKVRNLMKVNGISKVPGVSVI 541
>gi|225433481|ref|XP_002264386.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g03510 [Vitis vinifera]
gi|298205226|emb|CBI17285.3| unnamed protein product [Vitis vinifera]
Length = 430
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 124/332 (37%), Positives = 194/332 (58%), Gaps = 5/332 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR-NVVSWTGIIDGYTR 60
+ LFDE+P RN+V WN MI+ G + A LFE M N ++ II G +
Sbjct: 98 VSSARHLFDEIPHRNIVVWNAMISIYTHSGRVADALGLFEVMDVEPNASTFNAIISGLSG 157
Query: 61 M-NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
+ + S AL+ +RRM + + IT+LA+ PA + + IHGY + G + H
Sbjct: 158 LEDGSFKALSFYRRMGEVGLKQ-NLITLLALLPACVDLAALTLIKEIHGYAIRNGIDP-H 215
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
H+ +CL++ Y +CGCI ++ +F+ IS+ +++V+W+S+IS +A+HG + A+E FE+M
Sbjct: 216 PHLRSCLVEAYGRCGCIVNSQCVFQSISMSERDVVAWSSLISAYALHGDARTALETFEQM 275
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+ ++P+ +TFL VL ACSH GL +E L +F +M ++ V HY C++D L RAGR
Sbjct: 276 EMAKVQPDGITFLGVLKACSHAGLADEALGYFGRMCKDYGVEASSDHYSCVVDALSRAGR 335
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
L +A ++ G+P + T W LLGAC +G VE+ E R + E+E +YVL+
Sbjct: 336 LYEAYEIIQGMPVKST-AKTWGALLGACRTYGEVELAEIAGRALFELEPDNAANYVLLAR 394
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
I A V R+ +A+R+RR ++E PG S V
Sbjct: 395 IYASVGRHEEAQRMRREMNEMGVKAAPGSSWV 426
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 108/281 (38%), Gaps = 81/281 (28%)
Query: 48 VVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIH 107
++S+T ++ + R + AL+LF M A + P+ VFP +++C H
Sbjct: 11 LLSYTKLLASHVNQGRHHDALSLFHHMHAS--SAPALDAF--VFPLA-----LKSCAAAH 61
Query: 108 GYGEKRGFNAFHIHVSN-----------CLIDTYAKCGCIFSALKLFEDISVERKNLVSW 156
A H HV+ L+D Y KC + SA LF++I +N+V W
Sbjct: 62 ---RPNLGAAIHAHVTKFSLVSNPFVACALVDMYGKCVSVSSARHLFDEI--PHRNIVVW 116
Query: 157 TSIISGFAMHGMGKEAVENFE---------------------------------RMQKVV 183
++IS + G +A+ FE RM +V
Sbjct: 117 NAMISIYTHSGRVADALGLFEVMDVEPNASTFNAIISGLSGLEDGSFKALSFYRRMGEVG 176
Query: 184 LKPNRVTFLSVLNACS-----------HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLID 232
LK N +T L++L AC HG + G+ P CL++
Sbjct: 177 LKQNLITLLALLPACVDLAALTLIKEIHGYAIRNGID------------PHPHLRSCLVE 224
Query: 233 MLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
GR G + ++ V I +VV W +L+ A + HG+
Sbjct: 225 AYGRCGCIVNSQCVFQSISMSERDVVAWSSLISAYALHGDA 265
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 191/330 (57%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++ LF++LP R++V+WN+MI G +K+G L+ A +F+ MP +NV+SWT +I G+ R+
Sbjct: 161 IQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRI 220
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL+L ++M+ +P IT+ A G + + IH Y EK +
Sbjct: 221 GMHKEALSLLQQMLVAG-IKPDSITLSCSLSACAGLGALEQGKWIHTYIEKNEIKIDPV- 278
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ L D Y KCG + AL +F + E+K + +WT+II G A+HG G+EA++ F +MQK
Sbjct: 279 LGCVLTDMYVKCGEMEKALLVFSKL--EKKCVCAWTAIIGGLAIHGKGREALDWFTQMQK 336
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ PN +TF ++L ACSH GL EEG F+ M + P ++HYGC++D++GRAG L+
Sbjct: 337 AGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPSMEHYGCMVDLMGRAGLLK 396
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + +P + N +W LL AC H + E+G+ + + ++E++ + G Y+ + +I
Sbjct: 397 EAREFIESMPVK-PNAAIWGALLNACQLHKHFELGKEIGKILIELDPDHSGRYIHLASIY 455
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + R+R + R L PG S +
Sbjct: 456 AAAGEWNQVVRVRSQIKHRGLLNHPGCSSI 485
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 130/294 (44%), Gaps = 48/294 (16%)
Query: 15 RNLVTWNVMITGL--VKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFR 72
RN +T + ++ ++ L Y R +F+ + N V W ++ Y+ N AL L+
Sbjct: 40 RNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNTVIWNTMLRAYSNSNDPEAALLLYH 99
Query: 73 RMV-----ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
+M+ YT P + + A Q IH + KRGF ++ +N L+
Sbjct: 100 QMLHNSVPHNSYTFPFLLKACSALSAF------EETQQIHAHIIKRGF-GLEVYATNSLL 152
Query: 128 DTYAKCGCIFSALKLFEDI-----------------------------SVERKNLVSWTS 158
YA G I SA LF + ++ KN++SWT+
Sbjct: 153 RVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTT 212
Query: 159 IISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEEC 218
+I GF GM KEA+ ++M +KP+ +T L+AC+ G +E+G K+ +E+
Sbjct: 213 MIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQG-KWIHTYIEKN 271
Query: 219 EVLPDIKHYGC-LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
E+ D GC L DM + G +E+A V S + E V W ++G + HG
Sbjct: 272 EIKID-PVLGCVLTDMYVKCGEMEKALLVFSKL--EKKCVCAWTAIIGGLAIHG 322
>gi|297806919|ref|XP_002871343.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317180|gb|EFH47602.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 511
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 121/323 (37%), Positives = 199/323 (61%), Gaps = 3/323 (0%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FDE+ R++ WN MITG + G+++ A LF+ MP +NV SWT +I G+++ +
Sbjct: 138 RVFDEMSNRDVPVWNAMITGYQRRGDMKAAMELFDSMPNKNVTSWTTVISGFSQNGNYSE 197
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL +F M + +P+ IT+++V PA G++ + + GY + GF +I+V N
Sbjct: 198 ALTMFLCMEKDKSVKPNHITLVSVLPACANLGELEIGRRLEGYARENGFFD-NIYVRNAT 256
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
++ Y+KCG I A +LF++I +R NL+SW S+I A HG EA+E + +M + +P
Sbjct: 257 LEMYSKCGMIDVAKRLFDEIGNQR-NLISWNSMIGSLATHGKHDEALELYAQMLQEGERP 315
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ VTF+ +L AC HGG+V +G + M E ++ P ++HYGC+ID+LGR G+L++A +
Sbjct: 316 DAVTFVGLLLACVHGGMVLKGKELLKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEACDL 375
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P + + VVW TLLGACSFHGNVE+ E + ++++E G+ V+M NI A +
Sbjct: 376 IKTMPMK-PDAVVWGTLLGACSFHGNVEIAEIASEALMKLEPTNPGNCVIMSNIYAANEK 434
Query: 307 YGDAERLRRVVDERNALKFPGRS 329
+ R+R+++ + K G S
Sbjct: 435 WDGVLRMRKLMKKETMTKAAGYS 457
>gi|293331391|ref|NP_001168246.1| uncharacterized protein LOC100382009 [Zea mays]
gi|223946981|gb|ACN27574.1| unknown [Zea mays]
gi|413932359|gb|AFW66910.1| hypothetical protein ZEAMMB73_426189 [Zea mays]
Length = 499
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/324 (35%), Positives = 191/324 (58%), Gaps = 3/324 (0%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
FD + ERN+V+WN M++ + G L AR LF+ MP RN +W+ +I G R A
Sbjct: 168 FFDAMSERNVVSWNAMLSAYARAGMLTEARDLFDAMPTRNAATWSCMISGLVLSGRCWEA 227
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LF MV P+E +++V A Q + + +H Y E+ A + +++ +I
Sbjct: 228 LGLFGDMVHSSGIVPNEPALVSVVSACAQMRSLEHGAWVHAYAEQELQGAMSVVLASAII 287
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y KCG I SA+++F + + +N+ SW ++I+G AM+G ++A+ +MQ V ++PN
Sbjct: 288 DMYGKCGGIHSAIRVFAAMPM--RNIYSWNAMITGLAMNGGERQALSLLWKMQMVGVQPN 345
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TF+ +L+AC+H GLV EG + FD M+E+ + P +HYG ++D++GR+GR+ +A
Sbjct: 346 DITFIGLLSACTHSGLVNEGRRLFDSMIEDFGIQPFPQHYGLMVDLIGRSGRVMEALYFV 405
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P E + +W L AC HG VE+GE V +K++E+E +G Y+L+ N+ V R+
Sbjct: 406 KSMPVE-PHPGLWGALASACKMHGKVELGEEVAKKLIELEPRHGSRYILLSNLYGSVNRW 464
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
D +R+++ R K G ++V
Sbjct: 465 DDMASVRKILKRRKVPKGTGNAVV 488
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 71/139 (51%), Gaps = 10/139 (7%)
Query: 105 LIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFA 164
L+H + G +A ++V+N + +Y + SA +LF ++S + ++V+WT++++G A
Sbjct: 99 LLHSLALRLG-HARDVYVANAAVSSYFAASDVASADRLFAEVSTDVADVVTWTTMVTGHA 157
Query: 165 MHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDI 224
G A F+ M + N V++ ++L+A + G++ E FD M +
Sbjct: 158 SAGGLGRARHFFDAMS----ERNVVSWNAMLSAYARAGMLTEARDLFDAMPTR-----NA 208
Query: 225 KHYGCLIDMLGRAGRLEQA 243
+ C+I L +GR +A
Sbjct: 209 ATWSCMISGLVLSGRCWEA 227
>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g34160-like [Cucumis sativus]
Length = 576
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 197/316 (62%), Gaps = 5/316 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
+++ ++ K G+L+ A+ LF+EMP ++ SW +I G+ + +R A+ F+RM
Sbjct: 137 DVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMK 196
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
P+ +T+ A Q G ++ + +H Y + N+ ++ V N +ID YAKCG
Sbjct: 197 VDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLNS-NVQVCNVVIDMYAKCGS 255
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ A +FE++ + K+L++W ++I FAMHG G +A++ FE++ + + P+ V++L+VL
Sbjct: 256 MDKAYWVFENMRCD-KSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVL 314
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
AC+H GLVE+GLK F+ M + + P+IKHYG ++D+LGRAGRL++A + S +P
Sbjct: 315 CACNHAGLVEDGLKLFNSMTQR-GLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLP--FP 371
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
N+V+W+TLLGAC +G+VEM E +RK++EM GD+VL+ N+ A R+ D R+R
Sbjct: 372 NMVLWQTLLGACRTYGDVEMAELASRKLVEMGFISCGDFVLLSNVYAARQRWDDVGRVRD 431
Query: 316 VVDERNALKFPGRSLV 331
+ R+ K PG S +
Sbjct: 432 AMRRRDVKKTPGFSYI 447
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 124/261 (47%), Gaps = 27/261 (10%)
Query: 24 ITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVA------- 76
+ + +G+L YA +F +P + W +I G + A+ +R M A
Sbjct: 42 LCAISSFGDLSYALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRI 101
Query: 77 ----CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK 132
C + + LA AI +H + GFNA + + L+D YAK
Sbjct: 102 DALTCSFALKACARALARSEAIQ----------LHSQLLRFGFNA-DVLLQTTLLDAYAK 150
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ-KVVLKPNRVTF 191
G + A KLF+++ + ++ SW ++I+GFA +A+ F+RM+ L+PN VT
Sbjct: 151 IGDLDLAQKLFDEM--PQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTV 208
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
L ACS G ++EG +VEE ++ +++ +IDM + G +++A V +
Sbjct: 209 QGALLACSQLGALKEGESVHKYIVEE-KLNSNVQVCNVVIDMYAKCGSMDKAYWVFENMR 267
Query: 252 SEITNVVVWRTLLGACSFHGN 272
+ +++ W T++ A + HG+
Sbjct: 268 CD-KSLITWNTMIMAFAMHGD 287
>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
[Vitis vinifera]
Length = 612
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 119/324 (36%), Positives = 191/324 (58%), Gaps = 4/324 (1%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
+ D KLFDE+ R+++ W M++G KWG+++ A LF EMP +N VSWT +I GY R
Sbjct: 242 LMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYAR 301
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+ AL LF +M+ + P + T + A +++ + IH Y + F I
Sbjct: 302 NGMGHKALELFTKMMLF-HVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTI 360
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
VS LID Y+KCG + K+F D+ + ++V W +IIS A HG G+EA++ + M
Sbjct: 361 VVS-ALIDMYSKCGSLGIGRKVF-DLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMV 418
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ KP+++TF+ +LNACSH GLV++GL FF+ M + ++P +HY CLID+LGRAG
Sbjct: 419 RSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCF 478
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+ +P + + VW LLG C HG++E+G + +++E+E YVL+ +I
Sbjct: 479 EEVMDQLEKMPYKPDD-RVWNALLGVCRIHGHIELGRKAAERLIELEPQSSTAYVLLSSI 537
Query: 301 LAGVWRYGDAERLRRVVDERNALK 324
A + R+ +++R++++ER K
Sbjct: 538 YAVLGRWESVQKVRQLMNERQVKK 561
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 163/330 (49%), Gaps = 41/330 (12%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ K+FD++ RNL +WN M++G K G ++ AR LF++MP ++VVSW ++ + +
Sbjct: 113 EARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGY 172
Query: 64 SNGALALFR--RMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ AL + R + + S +L V + + G R +HG GF + ++
Sbjct: 173 WDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQ---VHGQILVAGFLS-NVV 228
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDIS-----------------------------VERKN 152
+S+ ++D Y KCG + A KLF+++S + KN
Sbjct: 229 LSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKN 288
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
VSWT++ISG+A +GMG +A+E F +M ++P++ TF S L AC+ ++ G +
Sbjct: 289 PVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHA 348
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
++ P+ LIDM + G L KV + +++ +VV+W T++ A + HG
Sbjct: 349 YLL-RINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKL-DVVLWNTIISALAQHG- 405
Query: 273 VEMGERVTRKILEMER-GYGGDYVLMYNIL 301
GE + + +M R G D + IL
Sbjct: 406 --CGEEAIQMLDDMVRSGAKPDKITFVVIL 433
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 100 VRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 159
+R + +H + + G +SN LI+ YAKCG A K+F+ +S +NL SW ++
Sbjct: 75 LREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSA--RNLYSWNNM 132
Query: 160 ISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDK 213
+SG+A GM K A + F++M + + V++ +++ A + G +E L+F+ +
Sbjct: 133 LSGYAKLGMIKPARKLFDKMP----EKDVVSWNTMVIAHAQCGYWDEALRFYSE 182
>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
gi|194692242|gb|ACF80205.1| unknown [Zea mays]
gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
Length = 590
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 190/325 (58%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD++PER+LV WN MI G + G ++ ARSLFEEMP RNV+SW+ +IDG+ +
Sbjct: 235 ELFDQMPERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVSCGEAKE 294
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL F+ M+ C P I + A Q G + + +H Y EK+ + + V L
Sbjct: 295 ALEYFQSMLRCGL-RPDRIAAVGAVSACAQLGALEQGRWLHSYLEKKKLLS-DVVVQTAL 352
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y KCGC+ A+ +FE S+ +++V+W +I G HG G +AV F RM+ +
Sbjct: 353 IDMYVKCGCLDLAMLIFE--SMAERSVVTWNVMIVGLGTHGFGLDAVTLFHRMEAESVAV 410
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ ++ L +L AC+H GLV EGL+ F +M ++ + P ++HYG L+D+LGRAGRL+QA
Sbjct: 411 DDLSVLGMLTACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHA 470
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E T +W +LL AC H VE+ E ++ ++ G YVL+ NI A
Sbjct: 471 IETMPMEPTP-ELWGSLLAACRSHSCVELAELSVERLADLGADDSGVYVLLSNIYADEGM 529
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+GD R+R+++ + K GRS++
Sbjct: 530 WGDVLRIRKLMSDEGMRKDIGRSVI 554
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 106/249 (42%), Gaps = 28/249 (11%)
Query: 36 ARSLFEEMP---CRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
A +F +P R+ +W I + R AL F RM C P T AV
Sbjct: 64 ADVVFARLPLPAARDPFAWNTAIRLHAP-ARPRAALLYFARMRRCG-VRPDAYTFPAVLK 121
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
A R L+H +RG A + N LI Y + I S K+F++ ++
Sbjct: 122 ACGCAPGCRAGLLVHAEAVRRGLAA-DLFTVNALISFYCRILDIRSGRKVFDEAGGVSRD 180
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF--LSVLNACSH--GGLVEEGL 208
LVSW S+++G+ G A E F+ M P + TF ++++ G V+
Sbjct: 181 LVSWNSMVAGYVGCGEMGLAQEMFDEM------PQKDTFSWATLIDGYGKQGGAGVDRAR 234
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
+ FD+M E D+ + +ID R GR+++A + +P NV+ W ++
Sbjct: 235 ELFDQMPER-----DLVCWNSMIDGYARHGRMDEARSLFEEMPER--NVISWSIVI---- 283
Query: 269 FHGNVEMGE 277
G+V GE
Sbjct: 284 -DGHVSCGE 291
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 117/329 (35%), Positives = 203/329 (61%), Gaps = 5/329 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+K S +F + ++V+W M+ G +K G++ AR LF++MP +N+V+W+ +I GY +
Sbjct: 164 IKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKN 223
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ + A+ L+ ++ E +E +++V + G + + H Y + ++
Sbjct: 224 SFFDKAIELYF-LLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTV-NLI 281
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ L+D YA+CG I A+ +F+ + ++ +SWT++I+GFAMHG ++A+E F RM+K
Sbjct: 282 LGTALVDMYARCGSIDKAIWVFDQLP--GRDALSWTTLIAGFAMHGYAEKALEYFSRMEK 339
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
L P +TF +VL+ACSHGGLVE GL+ F+ M + + P ++HYGC++D+LGRAG+L
Sbjct: 340 AGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLA 399
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AEK + +P + N +W LLGAC H N E+ ER + ++E++ + G YVL+ NI
Sbjct: 400 EAEKFVNEMPMK-PNAPIWGALLGACRIHKNSEIAERAGKTLIELKPEHSGYYVLLSNIY 458
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSL 330
A ++ + E +R+++ ER +K PG +L
Sbjct: 459 ARTNKWENVENIRQMMKERGVVKPPGYTL 487
>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 125/332 (37%), Positives = 195/332 (58%), Gaps = 8/332 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEY-ARSLFEEMPCRNVVSWTGIIDGYTR 60
+ + LFD +P ++L +WNVM++G + G+ AR LF++MP +N+V+W+ +I GY R
Sbjct: 183 MAEAQVLFDSMPVKDLASWNVMVSGYMDIGDYTNGARCLFDQMPMKNLVTWSTMIGGYAR 242
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQ-LIHGYGEKRGFNAFH 119
+ AL LF R + +P E IL + A Q G + + +IH Y +
Sbjct: 243 NGQPLKALELFERFKEQD-IKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLR 301
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+ S LID YAKCG I AL++FE K+L+ ++++I+ A HG+G++A+ F++M
Sbjct: 302 VFTS--LIDMYAKCGSIEKALQMFE--MAHPKDLLCYSTMIAALANHGLGRDAIFLFDKM 357
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
Q+ +KP+ VTFL VL AC+HGGLV+EG K+F +M EE + P KHY C++D+LGR G
Sbjct: 358 QRANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGC 417
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
LE+A + +P + VVW LL AC H NV++ E ++ ++E G+Y+L+ N
Sbjct: 418 LEEAYNLIRNMPIA-PHSVVWGALLAACRVHCNVQLAEVAAAELFKIEPDNSGNYILLSN 476
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
I A R+G ++R + E K G S +
Sbjct: 477 IYAAAGRWGSVAKVRAKIREHRVRKNRGSSWI 508
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 126/263 (47%), Gaps = 45/263 (17%)
Query: 9 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGAL 68
FDE+ E+++V+WN+MI+G ++ AR F+ MP RNVVSWT +I GY + A
Sbjct: 128 FDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQ 187
Query: 69 ALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLID 128
LF M + A W ++ GY + + D
Sbjct: 188 VLFDSMPVKDL-------------ASWN-------VMVSGYMD--------------IGD 213
Query: 129 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR 188
C+F + + KNLV+W+++I G+A +G +A+E FER ++ +KP+
Sbjct: 214 YTNGARCLFDQMPM--------KNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDE 265
Query: 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
L +++ACS G+++ V +L D++ + LIDM + G +E+A ++
Sbjct: 266 TFILGIISACSQLGIIDAAESIIHNYVGP-SLLSDLRVFTSLIDMYAKCGSIEKALQMFE 324
Query: 249 GIPSEITNVVVWRTLLGACSFHG 271
+ +++ + T++ A + HG
Sbjct: 325 --MAHPKDLLCYSTMIAALANHG 345
>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 115/326 (35%), Positives = 200/326 (61%), Gaps = 6/326 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FD + ER++V+WN +I+ + G++ AR++F MP + VVSWT ++ GYT +G
Sbjct: 174 KVFDGMQERDVVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSG 233
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ FR M E EP +++I+AV PA Q G + + I+ Y + +V N L
Sbjct: 234 AVEAFRLM-QMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQM-LRETYVCNAL 291
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV-VLK 185
++ YAKCGCI AL+LF ++ K+++SW++++ G A HG +EAV+ F M++ +K
Sbjct: 292 VEMYAKCGCIDQALQLFNGMA--EKDVISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVK 349
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN +TF+ +L+ACSH GL++EGL +FD+M + + P ++HYGC++D+L R+G++++
Sbjct: 350 PNGITFVGLLSACSHAGLLDEGLDYFDRMNDVYGIEPGVEHYGCIVDLLCRSGQIQRTLD 409
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
+ S +P + +W ++L AC HG+V+ +++ +E G+ V++ N+ A
Sbjct: 410 LISDMPLP-ADAKIWGSVLNACRSHGDVDTAVLAAERLVALEPEDVGNLVMLANVYAAAR 468
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
R+ + R+ + R+ K PG SL+
Sbjct: 469 RWSEVANTRKAIRSRSMRKTPGCSLI 494
>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
Length = 618
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 124/330 (37%), Positives = 201/330 (60%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + LF ++P R++ +WN+MITG ++ +LE A+ LF++MP RNV++WT +++GY +
Sbjct: 238 IDEAHDLFMKMPTRDIASWNIMITGFIQDRDLERAQDLFDKMPRRNVITWTTMMNGYLQS 297
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+S AL +F M+ E P+++T L A + Q +H K F F
Sbjct: 298 MQSETALQIFNGML-VEGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTSFQ-FDTF 355
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ + L++ YAKCG I A K+F D+S E K+++SW +I+ +A HG+G EA+ +E+MQ+
Sbjct: 356 IESTLMNLYAKCGEIRLARKVF-DLSKE-KDVISWNGMIAAYAHHGVGVEAIHLYEKMQE 413
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KPN VT++ +L+ACSH GLV+EGL+ F+ MV++ + +HY CLID+ RAGRL
Sbjct: 414 KGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLG 473
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A+++ + E ++ VW LLG C+ HGN +G+ R +LE E G Y L+ NI
Sbjct: 474 DAKRLIHFLKVEPSS-TVWNALLGGCNSHGNESIGDLAARNLLEAEPNNAGTYTLLCNIY 532
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ +A ++R +++R K PG S +
Sbjct: 533 ASAGKWKEAAKIRSEMNDRGLKKQPGCSWI 562
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 128/270 (47%), Gaps = 46/270 (17%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ KLFD +PERN++ W M+ G+ + G ++ AR+LF+ MP RNVVSW +I GY R
Sbjct: 176 MDKARKLFDRMPERNVMAWTTMVAGIARSGSVDEARALFDGMPERNVVSWNAMISGYARN 235
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+R + A LF +M + A W
Sbjct: 236 HRIDEAHDLFMKMPTRDI-------------ASW-------------------------- 256
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
N +I + + + A LF+ + R+N+++WT++++G+ + A++ F M
Sbjct: 257 --NIMITGFIQDRDLERAQDLFD--KMPRRNVITWTTMMNGYLQSMQSETALQIFNGMLV 312
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++PN+VTFL ++ACS+ + EG + +M+ + D L+++ + G +
Sbjct: 313 EGIRPNQVTFLGAVDACSNLAGLSEGQQVH-QMICKTSFQFDTFIESTLMNLYAKCGEIR 371
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHG 271
A KV S+ +V+ W ++ A + HG
Sbjct: 372 LARKVFD--LSKEKDVISWNGMIAAYAHHG 399
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 128/264 (48%), Gaps = 24/264 (9%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC-RNVVSWTGIIDGYTR 60
+ D +LFD P+R++V+W ++ + G L AR+LF+ RNVV+WT ++ GY R
Sbjct: 51 VSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFDRPDARRNVVTWTALLSGYAR 110
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
R + A ALF+RM E + ++ + A G VR+ + R ++
Sbjct: 111 AGRVDEAEALFQRM-----PERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPVRDAGSW-- 163
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
N L+ + G + A KLF+ + +N+++WT++++G A G EA F+ M
Sbjct: 164 ---NILLAALVRSGNMDKARKLFD--RMPERNVMAWTTMVAGIARSGSVDEARALFDGMP 218
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ N V++ ++++ + ++E F KM DI + +I + L
Sbjct: 219 ----ERNVVSWNAMISGYARNHRIDEAHDLFMKMPTR-----DIASWNIMITGFIQDRDL 269
Query: 241 EQAEKVASGIPSEITNVVVWRTLL 264
E+A+ + +P NV+ W T++
Sbjct: 270 ERAQDLFDKMPRR--NVITWTTMM 291
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 107/244 (43%), Gaps = 22/244 (9%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N + L G + AR LF+ P R+VVSWT ++ Y R + A ALF R A
Sbjct: 39 NRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFDRPDA---- 94
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+ +T A+ + G V + + +R ++ N +++ Y G + A
Sbjct: 95 RRNVVTWTALLSGYARAGRVDEAEALFQRMPERNVVSW-----NTMLEAYTSAGRVRDAW 149
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
LF+ + V ++ SW +++ G +A + F+RM + N + + +++ +
Sbjct: 150 TLFDGMPV--RDAGSWNILLAALVRSGNMDKARKLFDRMP----ERNVMAWTTMVAGIAR 203
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
G V+E FD M E ++ + +I R R+++A + +P+ ++ W
Sbjct: 204 SGSVDEARALFDGMPER-----NVVSWNAMISGYARNHRIDEAHDLFMKMPTR--DIASW 256
Query: 261 RTLL 264
++
Sbjct: 257 NIMI 260
>gi|297599966|ref|NP_001048246.2| Os02g0769900 [Oryza sativa Japonica Group]
gi|46805413|dbj|BAD16915.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255671273|dbj|BAF10160.2| Os02g0769900 [Oryza sativa Japonica Group]
Length = 438
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 201/325 (61%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD +P R+ VT+N +I+GL++ G + A +F+ MP + VSWT +IDG + R +
Sbjct: 71 QLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDE 130
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ FR M+ + EP +T++AV A + G + +H ++G ++ ++N L
Sbjct: 131 AIDCFRAML-LDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLER-NVRIANSL 188
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YA+CG + A ++F + ++ +VSW S+I GFA +G +AVE+FE M++ KP
Sbjct: 189 IDMYARCGQVELARQVFS--GMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKP 246
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ VTF VL ACSHGGL +EGL+++D M E + ++HYGC++D+LGR+G+LE+A +V
Sbjct: 247 DAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQLEEAMRV 306
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ +P N VV LL C HG+V M E++ + +LE++ G +YVL+ NI A V +
Sbjct: 307 VTTMPMR-PNEVVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGK 365
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ A ++R ++ R K PG S V
Sbjct: 366 WDGAGKVRSLMKARGLRKRPGYSAV 390
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 34/214 (15%)
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF--HIHVSNCLIDTYAKCGCIFSA 139
P+++T+L V A + + + R F H+ +S CL+ Y A
Sbjct: 10 PNDVTLLTVLSACADSPSSPLARRLALSVHARVLKLFPSHLLLSTCLVRFYFASRLPHLA 69
Query: 140 LKLFEDISVER-----------------------------KNLVSWTSIISGFAMHGMGK 170
L+LF+ + V + VSWT++I G +G
Sbjct: 70 LQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHD 129
Query: 171 EAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCL 230
EA++ F M ++P+ VT ++V++AC+ G + G+ + ++V + +++ L
Sbjct: 130 EAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGM-WVHRLVVRQGLERNVRIANSL 188
Query: 231 IDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
IDM R G++E A +V SG+ VV W +++
Sbjct: 189 IDMYARCGQVELARQVFSGMRKR--TVVSWNSMI 220
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 119/322 (36%), Positives = 193/322 (59%), Gaps = 5/322 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LF+++ +NLV M+TG K G++E ARS+F +M +++V W+ +I GY + A
Sbjct: 280 LFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEA 339
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LF M + +P ++T+L+V A G + + IH + +K GF + ++N LI
Sbjct: 340 LNLFNEMQSLG-IKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGA-LPINNALI 397
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
+ YAKCG + A ++F+ + RKN++SWT +IS FAMHG A+ F +M+ ++PN
Sbjct: 398 EMYAKCGSLERARRIFDKMP--RKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPN 455
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TF+ VL ACSH GLVEEG K F M+ E + P HYGC++D+ GRA L +A ++
Sbjct: 456 GITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELV 515
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P NV++W +L+ AC HG +E+GE +++LE++ + G +V + NI A R+
Sbjct: 516 EAMPLA-PNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKARRW 574
Query: 308 GDAERLRRVVDERNALKFPGRS 329
D ++R+++ + K G S
Sbjct: 575 EDVGQVRKLMKHKGISKERGCS 596
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 117/271 (43%), Gaps = 17/271 (6%)
Query: 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM-----VA 76
++I+ L+YA S+F +P + +R L ++ RM
Sbjct: 61 LVISSCALSSSLDYALSVFNLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAV 120
Query: 77 CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136
++ P + L+ ++ + + IHG K GF++ V L+ YA CG I
Sbjct: 121 DRFSFPPLLKALSRVKSLVEGLE------IHGLAAKLGFDSDPF-VQTGLVRMYAACGRI 173
Query: 137 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLN 196
A +F+ + +++V+W+ +I G+ G+ +A+ FE M+ ++P+ + +VL+
Sbjct: 174 AEARLMFDKMF--HRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLS 231
Query: 197 ACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256
AC G + G K + E ++ D L+ M G ++ A + + + N
Sbjct: 232 ACGRAGNLSYG-KMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPK--N 288
Query: 257 VVVWRTLLGACSFHGNVEMGERVTRKILEME 287
+V ++ S G +E V ++++ +
Sbjct: 289 LVASTAMVTGYSKLGQIENARSVFNQMVKKD 319
>gi|46805412|dbj|BAD16914.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215704291|dbj|BAG93131.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 527
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 201/325 (61%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD +P R+ VT+N +I+GL++ G + A +F+ MP + VSWT +IDG + R +
Sbjct: 160 QLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDE 219
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ FR M+ + EP +T++AV A + G + +H ++G ++ ++N L
Sbjct: 220 AIDCFRAML-LDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLER-NVRIANSL 277
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YA+CG + A ++F + ++ +VSW S+I GFA +G +AVE+FE M++ KP
Sbjct: 278 IDMYARCGQVELARQVFS--GMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKP 335
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ VTF VL ACSHGGL +EGL+++D M E + ++HYGC++D+LGR+G+LE+A +V
Sbjct: 336 DAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQLEEAMRV 395
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ +P N VV LL C HG+V M E++ + +LE++ G +YVL+ NI A V +
Sbjct: 396 VTTMPMR-PNEVVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGK 454
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ A ++R ++ R K PG S V
Sbjct: 455 WDGAGKVRSLMKARGLRKRPGYSAV 479
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 104/251 (41%), Gaps = 36/251 (14%)
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF--HIHVSNCLIDTYAKCGCIFSA 139
P+++T+L V A + + + R F H+ +S CL+ Y A
Sbjct: 99 PNDVTLLTVLSACADSPSSPLARRLALSVHARVLKLFPSHLLLSTCLVRFYFASRLPHLA 158
Query: 140 LKLFEDISVER-----------------------------KNLVSWTSIISGFAMHGMGK 170
L+LF+ + V + VSWT++I G +G
Sbjct: 159 LQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHD 218
Query: 171 EAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCL 230
EA++ F M ++P+ VT ++V++AC+ G + G+ + ++V + +++ L
Sbjct: 219 EAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGM-WVHRLVVRQGLERNVRIANSL 277
Query: 231 IDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 290
IDM R G++E A +V SG+ VV W +++ F N + V G+
Sbjct: 278 IDMYARCGQVELARQVFSGM--RKRTVVSWNSMI--VGFAANGRCADAVEHFEAMRREGF 333
Query: 291 GGDYVLMYNIL 301
D V +L
Sbjct: 334 KPDAVTFTGVL 344
>gi|147777522|emb|CAN64813.1| hypothetical protein VITISV_024998 [Vitis vinifera]
Length = 513
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 123/330 (37%), Positives = 193/330 (58%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR-NVVSWTGIIDGYTR 60
+ LFDE+P RN+V WN MI+ G + A LFE M N ++ II G +
Sbjct: 98 VSSARHLFDEIPHRNIVVWNAMISIYTHSGRVADALGLFEVMDVEPNASTFNAIISGLSG 157
Query: 61 M-NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
+ + S AL+ +RRM + + IT+LA+ PA + + IHGY + G + H
Sbjct: 158 LEDGSFKALSFYRRMGEVGLKQ-NLITLLALLPACVDLAALTLIKEIHGYAIRNGIDP-H 215
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
H+ +CL++ Y +CGCI ++ +F+ IS+ +++V+W+S+IS +A+HG + A+E FE+M
Sbjct: 216 PHLRSCLVEAYGRCGCIVNSQCVFQSISMSERDVVAWSSLISAYALHGDARTALETFEQM 275
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+ ++P+ +TFL VL ACSH GL +E L +F +M ++ V HY C++D L RAGR
Sbjct: 276 EMAKVQPDGITFLGVLKACSHAGLADEALGYFGRMCKDYGVEASSDHYSCVVDALSRAGR 335
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
L +A ++ G+P + T W LLGAC +G VE+ E R + E+E +YVL+
Sbjct: 336 LYEAYEIIQGMPVKAT-AKTWGALLGACRTYGEVELAEIAGRALFELEPDNAANYVLLAR 394
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRS 329
I A V R+ +A+R+RR ++E PG S
Sbjct: 395 IYASVGRHEEAQRMRREMNEMGVKAAPGSS 424
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 108/281 (38%), Gaps = 81/281 (28%)
Query: 48 VVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIH 107
++S+T ++ + R + AL+LF M A + P+ VFP +++C H
Sbjct: 11 LLSYTKLLASHVNQGRHHDALSLFHHMHAS--SAPALDAF--VFPLA-----LKSCAAAH 61
Query: 108 GYGEKRGFNAFHIHVSN-----------CLIDTYAKCGCIFSALKLFEDISVERKNLVSW 156
A H HV+ L+D Y KC + SA LF++I +N+V W
Sbjct: 62 ---RPNLGAAIHAHVTKFSLVSNPFVACALVDMYGKCVSVSSARHLFDEI--PHRNIVVW 116
Query: 157 TSIISGFAMHGMGKEAVENFE---------------------------------RMQKVV 183
++IS + G +A+ FE RM +V
Sbjct: 117 NAMISIYTHSGRVADALGLFEVMDVEPNASTFNAIISGLSGLEDGSFKALSFYRRMGEVG 176
Query: 184 LKPNRVTFLSVLNACS-----------HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLID 232
LK N +T L++L AC HG + G+ P CL++
Sbjct: 177 LKQNLITLLALLPACVDLAALTLIKEIHGYAIRNGID------------PHPHLRSCLVE 224
Query: 233 MLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
GR G + ++ V I +VV W +L+ A + HG+
Sbjct: 225 AYGRCGCIVNSQCVFQSISMSERDVVAWSSLISAYALHGDA 265
>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 190/327 (58%), Gaps = 31/327 (9%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++F+++P + ++ W M++G V G+L+ AR LFE P R+VV WT +I+GY + NR +
Sbjct: 223 QIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDD 282
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ALFR M + P T++A+ V L
Sbjct: 283 AVALFREM-QIKRVSPDRFTLVALLTDAV--------------------------VGTAL 315
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
I+ YAKCG I +L++F ++ K+ SWTSII G AM+G +A+E F M + +KP
Sbjct: 316 IEMYAKCGFIEKSLEIFN--GLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKP 373
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +TF+ VL+ACSHGGLVEEG K F M ++ P ++HYGCLID+LGRAG+L++AE++
Sbjct: 374 DDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEEL 433
Query: 247 ASGIPSEITNVVV--WRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
P+ V+V + LL AC HGNVEMGERV ++++ +E G + L+ NI A
Sbjct: 434 IEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLLANIYASA 493
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
R+ D ++RR + + K PG S V
Sbjct: 494 DRWEDVTKVRRKMKDLGVKKVPGCSSV 520
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 131/333 (39%), Gaps = 91/333 (27%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G L YA +F + + + +I +T+ A+ LFR++ E P T V
Sbjct: 80 GNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLRE-EGLSPDNFTYPFV 138
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI---- 146
F AI G+VR + ++G+ K G F +V N L+D YA+ G + + ++FE++
Sbjct: 139 FKAIGCLGEVREGEKVYGFVVKSGLE-FDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRD 197
Query: 147 -----------------------------SVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
+ K ++ WTS++SG+ G EA E FE
Sbjct: 198 VVSWNVLISGYVKCRRYEDAVDVFRQIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFE 257
Query: 178 R-------------------------------MQKVVLKPNRVTFLSVLNACSHG----- 201
R MQ + P+R T +++L G
Sbjct: 258 RSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTDAVVGTALIE 317
Query: 202 -----GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ-----AEKVASGI- 250
G +E+ L+ F+ + E+ D + +I L G+ + AE V +G+
Sbjct: 318 MYAKCGFIEKSLEIFNGLKEK-----DTASWTSIICGLAMNGKTSKALELFAEMVQTGVK 372
Query: 251 PSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
P +IT + V L ACS G VE G + R +
Sbjct: 373 PDDITFIGV----LSACSHGGLVEEGRKHFRSM 401
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 128/330 (38%), Positives = 188/330 (56%), Gaps = 20/330 (6%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ KLFD + + +V+W M LF+EMP ++VV W +I GY
Sbjct: 231 LESARKLFDSMTNKTMVSWTTM---------------LFDEMPDKDVVPWNAMIGGYVHA 275
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
NR ALALF M A P E+T+++ A Q G + IH Y EK + ++
Sbjct: 276 NRGKEALALFNEMQAMN-INPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHEL-SLNVA 333
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LID YAKCG I A+++F+++ +N ++WT+IISG A+HG A+ F M
Sbjct: 334 LGTALIDMYAKCGKITKAIQVFQELP--GRNSLTWTAIISGLALHGNAHGAIAYFSEMID 391
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ P+ VTFL +L+AC HGGLVEEG K+F +M + + P +KHY C++D+LGRAG LE
Sbjct: 392 NSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLE 451
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AE++ +P E + VVW L AC HGNV MGER K+L+M+ G YVL+ N+
Sbjct: 452 EAEELIKSMPIE-ADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMY 510
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ +A + R+++ +R K PG S +
Sbjct: 511 GEAEMWKEAGKXRKLMRQRGVEKTPGCSSI 540
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 143/275 (52%), Gaps = 19/275 (6%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ ++ N +I LV G+L+ AR +F++ R++VSW +I+GY R + AL +R
Sbjct: 111 DSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYRE 170
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M E +P E+T++ V + Q D+ + H Y E+ G + ++N L+D Y KC
Sbjct: 171 M-KVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLK-LTVPLANALMDMYMKC 228
Query: 134 GCIFSALKLFEDIS--------------VERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
G + SA KLF+ ++ + K++V W ++I G+ GKEA+ F M
Sbjct: 229 GNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEM 288
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
Q + + P+ VT +S L+ACS G ++ G+ + +E+ E+ ++ LIDM + G+
Sbjct: 289 QAMNINPDEVTMVSCLSACSQLGALDVGI-WIHHYIEKHELSLNVALGTALIDMYAKCGK 347
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
+ +A +V +P N + W ++ + HGN
Sbjct: 348 ITKAIQVFQELPGR--NSLTWTAIISGLALHGNAH 380
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 117/254 (46%), Gaps = 28/254 (11%)
Query: 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTE 81
+ + +W +L+Y ++ N SW I G+ A+ L++R++ C+ T+
Sbjct: 17 IAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTK 76
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
P T +F A + +R I G+ GF++ I VSN +I CG + A K
Sbjct: 77 PDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDS-DIFVSNAVIHLLVSCGDLDGARK 135
Query: 142 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC--- 198
+F+ V ++LVSW S+I+G+ G EA+ + M+ +KP+ VT + V+++C
Sbjct: 136 MFDKSCV--RDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQL 193
Query: 199 --------SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI 250
SH + E GLK + L+DM + G LE A K+ +
Sbjct: 194 EDLDLGRESHCYIEENGLKL------------TVPLANALMDMYMKCGNLESARKLFDSM 241
Query: 251 PSEITNVVVWRTLL 264
++ +V W T+L
Sbjct: 242 TNK--TMVSWTTML 253
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 118/328 (35%), Positives = 190/328 (57%), Gaps = 5/328 (1%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ ++F ++ +N+V W ++ +K G+L A +F EMP RNVVSW +I GY +
Sbjct: 417 EAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGD 476
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
L M A E +P +T++ + A + +L+H K G + + V+
Sbjct: 477 IVKVFELLSSMKA-EGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTV-VA 534
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
LI Y+KCG + A +F+ +S ++ V+W ++++G+ HG G EAV+ F+RM K
Sbjct: 535 TSLIGMYSKCGQVAEARTVFDKMS--NRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKER 592
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
+ PN +T +V++ACS GLV+EG + F M E+ ++ P +HYGC++D+LGRAGRL++A
Sbjct: 593 VSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEA 652
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
E+ +P E ++ VW LLGAC H NV++ ER ILE+E Y Y+ + NI A
Sbjct: 653 EEFIQSMPCE-PDISVWHALLGACKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQ 711
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
R+ D+ ++RRV+D+R K G S +
Sbjct: 712 AGRWDDSTKVRRVMDDRGLKKDRGESSI 739
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 155/329 (47%), Gaps = 12/329 (3%)
Query: 7 KLFDELP-ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 65
K DEL E ++ N +I K+ ++ A +F M R+VV+W+ +I Y N
Sbjct: 80 KQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPA 139
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
A F RM EP+ IT L++ A + + IH + G + V+
Sbjct: 140 KAFDTFERMTDAN-IEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMET-DVAVATA 197
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
LI Y+KCG I A ++F ++ +N+VSWT+II A H EA E +E+M + +
Sbjct: 198 LITMYSKCGEISVACEVFHKMT--ERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGIS 255
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN VTF+S+LN+C+ + G + + E + D+ LI M + +++A +
Sbjct: 256 PNAVTFVSLLNSCNTPEALNRGRRIHSHISER-GLETDMIVANALITMYCKCNSVQEARE 314
Query: 246 VASGIPSEITNVVVWRTLLG--ACSFHGNVEMGERVTRKILEMER-GYGGDYVLMYNILA 302
+ + +V+ W ++ A S + + E + V + + M R G + V +IL
Sbjct: 315 IFDRMSKR--DVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILR 372
Query: 303 GVWRYGDAERLRRVVDERNALKFP-GRSL 330
+G E+ R++ E + + F RSL
Sbjct: 373 ACTAHGALEQGRQIHAELSKVGFELDRSL 401
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 122/300 (40%), Gaps = 60/300 (20%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+++ ++FD + +R++++W+ MI G YA+S GY
Sbjct: 309 VQEAREIFDRMSKRDVISWSAMIAG--------YAQS------------------GYKDK 342
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ L RM E P+++T +++ A +G + + IH K GF
Sbjct: 343 ESIDEVFQLLERMRR-EGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFE-LDRS 400
Query: 122 VSNCLIDTYAKCGCIFSALKLFE---------------------DISVERK--------N 152
+ + + YAKCG I+ A ++F D+S K N
Sbjct: 401 LQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRN 460
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
+VSW +I+G+A +G + E M+ +P+RVT +++L AC +E G K
Sbjct: 461 VVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERG-KLVH 519
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
+ + D LI M + G++ +A V + + T V W +L HG+
Sbjct: 520 AEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDT--VAWNAMLAGYGQHGD 577
>gi|334184919|ref|NP_182060.2| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
gi|218546767|sp|O22137.2|PP202_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g45350, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 4; Flags: Precursor
gi|330255448|gb|AEC10542.1| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
Length = 613
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 201/332 (60%), Gaps = 8/332 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D LFD +P R++VTW MI G K G + +A++LF++MP R+VV++ ++ GY +
Sbjct: 268 IEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQN 327
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY-GEKRGFNAFHI 120
AL +F M + P + T++ V PAI Q G + +H Y EK+ + +
Sbjct: 328 KYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKL 387
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V+ LID Y+KCG I A+ +FE I E K++ W ++I G A+HG+G+ A + +++
Sbjct: 388 GVA--LIDMYSKCGSIQHAMLVFEGI--ENKSIDHWNAMIGGLAIHGLGESAFDMLLQIE 443
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
++ LKP+ +TF+ VLNACSH GLV+EGL F+ M + ++ P ++HYGC++D+L R+G +
Sbjct: 444 RLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSI 503
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG-GDYVLMYN 299
E A+ + +P E N V+WRT L ACS H E GE V + ++ ++ GY YVL+ N
Sbjct: 504 ELAKNLIEEMPVE-PNDVIWRTFLTACSHHKEFETGELVAKHLI-LQAGYNPSSYVLLSN 561
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ A + D R+R ++ ER K PG S +
Sbjct: 562 MYASFGMWKDVRRVRTMMKERKIEKIPGCSWI 593
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 143/286 (50%), Gaps = 22/286 (7%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDGYTRMNRS 64
++FD +P+R+ V++N MI G VK G + AR LF+ MP +N++SW +I GY + +
Sbjct: 177 QMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDG 236
Query: 65 -NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
+ A LF M E I+ ++ ++G + + + + +R +
Sbjct: 237 VDIASKLFADM-----PEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTW----- 286
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
+ID YAK G + A LF+ + +++V++ S+++G+ + EA+E F M+K
Sbjct: 287 ATMIDGYAKLGFVHHAKTLFDQMP--HRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKES 344
Query: 184 -LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
L P+ T + VL A + G + + + +VE+ L K LIDM + G ++
Sbjct: 345 HLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGG-KLGVALIDMYSKCGSIQH 403
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
A V GI E ++ W ++G + HG +GE +L++ER
Sbjct: 404 AMLVFEGI--ENKSIDHWNAMIGGLAIHG---LGESAFDMLLQIER 444
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 94/213 (44%), Gaps = 42/213 (19%)
Query: 84 EITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC-------- 135
+ ++ V A + G V+ IHG+ +K G + + + NCLI Y KCGC
Sbjct: 121 KFSLSLVLKACSRLGFVKGGMQIHGFLKKTGLWS-DLFLQNCLIGLYLKCGCLGLSRQMF 179
Query: 136 -----------------------IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEA 172
I SA +LF+ + +E KNL+SW S+ISG+A +
Sbjct: 180 DRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYA---QTSDG 236
Query: 173 VENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLID 232
V+ ++ + + + +++ S+++ G +E+ FD M D+ + +ID
Sbjct: 237 VDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRR-----DVVTWATMID 291
Query: 233 MLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
+ G + A+ + +P +VV + +++
Sbjct: 292 GYAKLGFVHHAKTLFDQMPHR--DVVAYNSMMA 322
>gi|345505222|gb|AEN99835.1| chlororespiratory reduction 4, partial [Lepidium sativum]
Length = 597
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 197/331 (59%), Gaps = 6/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D LFD +P R+++TW MI G K G + A++LF+++P R+VV++ ++ GY +
Sbjct: 252 IEDAKDLFDVMPRRDVITWATMIDGYAKLGFIHQAKTLFDQIPHRDVVAYNSMMAGYVQN 311
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL LF +M + P E T++ V AI Q G + +H Y K+ F
Sbjct: 312 KYHMEALELFIKMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHFYIVKKQF-FIGGK 370
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LID Y+KCG I A+ +F+ +E KN+ W +II G A+HG+G A + ++++
Sbjct: 371 LGVALIDMYSKCGSIQHAMLVFK--GLENKNIDHWNAIIGGLAIHGLGGPAFDMLLQIER 428
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ +KP+ +TF+ VLNACSH GLV+EGL F+ M + ++ P ++HYGC++D+L R+G +E
Sbjct: 429 LSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIE 488
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG-GDYVLMYNI 300
A+ + +P E N V+WRT L ACS H EMGE V + ++ ++ GY YVL+ N+
Sbjct: 489 LAKILIEKMPIE-PNDVIWRTFLTACSHHKEFEMGELVAKHLI-LQAGYNPSSYVLLSNM 546
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + D R+R ++ ER K PG S +
Sbjct: 547 YASCGMWKDVRRVRTMMKERKIQKIPGCSWI 577
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 145/286 (50%), Gaps = 22/286 (7%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDGYTRMNRS 64
++FD +P+R+ V++N MI G VK G +E AR LF+ MP +N++SW +I GY + +
Sbjct: 161 QVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPKEMKNLISWNCLISGYAQTSDG 220
Query: 65 -NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
N A LF M E I+ ++ ++G + + + + +R +
Sbjct: 221 VNIASKLFSEM-----PEKDLISWNSMIDGYVKHGRIEDAKDLFDVMPRRDVITW----- 270
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
+ID YAK G I A LF+ I +++V++ S+++G+ + EA+E F +M+K
Sbjct: 271 ATMIDGYAKLGFIHQAKTLFDQIP--HRDVVAYNSMMAGYVQNKYHMEALELFIKMEKES 328
Query: 184 -LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
L P+ T + VL+A + G + + + +V++ + K LIDM + G ++
Sbjct: 329 HLSPDETTLVIVLSAIAQLGRLSKAMDMHFYIVKK-QFFIGGKLGVALIDMYSKCGSIQH 387
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
A V G+ E N+ W ++G + HG +G +L++ER
Sbjct: 388 AMLVFKGL--ENKNIDHWNAIIGGLAIHG---LGGPAFDMLLQIER 428
>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
Length = 572
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 123/323 (38%), Positives = 193/323 (59%), Gaps = 5/323 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
KL++ +P ++LV+ M+ G + + E AR +F+ MP ++VVSW+ +I GY N+ N
Sbjct: 227 KLYNGMPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNE 286
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL+LF M C P E+T+L+V A G + + IH + + G N +H+ N L
Sbjct: 287 ALSLFNDMQECG-IRPDEVTMLSVISACANLGSLDKAKWIHAFIKNNGLNKI-LHICNAL 344
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID +AKCG I AL +F ++ +KN+++WTS+I+ FAMHG GK A+ FE+M+ ++P
Sbjct: 345 IDMFAKCGGINLALNIFNEM--PQKNVITWTSMITAFAMHGDGKSALCLFEQMRNEGVEP 402
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N VTFL++L AC H GLV EG F MV++ + P +HYGC++D+LGRA +++A +
Sbjct: 403 NEVTFLNLLYACCHAGLVHEGRSLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVNL 462
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ NV VW +LL AC HG++++G +KIL+++ + G VL+ I
Sbjct: 463 IESMHLR-PNVPVWGSLLAACWMHGDLKLGAFAAKKILQLDPNHDGASVLLSKIYMKSDN 521
Query: 307 YGDAERLRRVVDERNALKFPGRS 329
DA+ +R V+ + K G S
Sbjct: 522 LNDAQEVRDVMKLQGVSKETGLS 544
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 122/266 (45%), Gaps = 34/266 (12%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW 95
AR +F+ M R+VVSW ++D Y + AL F +M ++ + V A
Sbjct: 124 ARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVLS-DQLILATVLSACG 182
Query: 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS-------- 147
+R + IH Y + H+S+ LI+ YA C + A KL+ +
Sbjct: 183 HIRHLRTGKSIHSYMLVSDI-LINAHLSSALINLYASCASMEMAEKLYNGMPRKDLVSST 241
Query: 148 ---------------------VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+ K++VSW+++ISG+A EA+ F MQ+ ++P
Sbjct: 242 AMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRP 301
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ VT LSV++AC++ G +++ K+ ++ + + LIDM + G + A +
Sbjct: 302 DEVTMLSVISACANLGSLDKA-KWIHAFIKNNGLNKILHICNALIDMFAKCGGINLALNI 360
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGN 272
+ +P + NV+ W +++ A + HG+
Sbjct: 361 FNEMPQK--NVITWTSMITAFAMHGD 384
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V L+ YA CGC+ A K+F+ ++V +++VSW ++ + KEA+ F +M+
Sbjct: 107 VRTALVGAYAACGCVGDARKVFDGMAV--RDVVSWGVMLDSYCQTRNYKEALLQFAKMKN 164
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ +++ +VL+AC H + G M+ ++L + LI++ +E
Sbjct: 165 SGVLSDQLILATVLSACGHIRHLRTGKSIHSYMLVS-DILINAHLSSALINLYASCASME 223
Query: 242 QAEKVASGIP 251
AEK+ +G+P
Sbjct: 224 MAEKLYNGMP 233
>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g22410, mitochondrial; Flags: Precursor
gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
Length = 681
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 120/330 (36%), Positives = 192/330 (58%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + ++FD L +R +V+W MI+G + G L+ +R LF++M ++VV W +I G +
Sbjct: 308 IHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQA 367
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R ALALF+ M T+P EIT++ A Q G + IH Y EK + ++
Sbjct: 368 KRGQDALALFQEMQTSN-TKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSL-SLNVA 425
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ L+D YAKCG I AL +F I + +N +++T+II G A+HG A+ F M
Sbjct: 426 LGTSLVDMYAKCGNISEALSVFHGI--QTRNSLTYTAIIGGLALHGDASTAISYFNEMID 483
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ P+ +TF+ +L+AC HGG+++ G +F +M + P +KHY ++D+LGRAG LE
Sbjct: 484 AGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLE 543
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A+++ +P E + VW LL C HGNVE+GE+ +K+LE++ G YVL+ +
Sbjct: 544 EADRLMESMPME-ADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMY 602
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ DA+R RR+++ER K PG S +
Sbjct: 603 GEANMWEDAKRARRMMNERGVEKIPGCSSI 632
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 145/284 (51%), Gaps = 38/284 (13%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N I G++E AR +F+E P R++VSW +I+GY ++ + A+ +++ M + E
Sbjct: 195 NASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMES-EGV 253
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+P ++T++ + + GD+ + + Y ++ G I + N L+D ++KCG I A
Sbjct: 254 KPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLR-MTIPLVNALMDMFSKCGDIHEAR 312
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGM-------------------------------G 169
++F+++ E++ +VSWT++ISG+A G+ G
Sbjct: 313 RIFDNL--EKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRG 370
Query: 170 KEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC 229
++A+ F+ MQ KP+ +T + L+ACS G ++ G+ + + +E+ + ++
Sbjct: 371 QDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGI-WIHRYIEKYSLSLNVALGTS 429
Query: 230 LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
L+DM + G + +A V GI + N + + ++G + HG+
Sbjct: 430 LVDMYAKCGNISEALSVFHGI--QTRNSLTYTAIIGGLALHGDA 471
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 127/258 (49%), Gaps = 18/258 (6%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV--ACEYTEPSEITILAV 90
L+Y+ + + + N+ SW I G++ + L+++M+ C + P T +
Sbjct: 103 LDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVL 162
Query: 91 FPAIWQNGDVRNCQLIH---GYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS 147
F D+R L H G+ K HV N I +A CG + +A K+F++
Sbjct: 163 FKVC---ADLRLSSLGHMILGHVLKLRLELVS-HVHNASIHMFASCGDMENARKVFDESP 218
Query: 148 VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEG 207
V ++LVSW +I+G+ G ++A+ ++ M+ +KP+ VT + ++++CS G + G
Sbjct: 219 V--RDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRG 276
Query: 208 LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC 267
+F++ V+E + I L+DM + G + +A ++ + E +V W T++
Sbjct: 277 KEFYE-YVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNL--EKRTIVSWTTMISGY 333
Query: 268 SFHGNVEMGERVTRKILE 285
+ G ++ V+RK+ +
Sbjct: 334 ARCGLLD----VSRKLFD 347
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 120/327 (36%), Positives = 193/327 (59%), Gaps = 6/327 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FD + +N+ W M+TG V G+L+ AR+LFE P R++V WT +I+GY + NR
Sbjct: 265 EIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEE 324
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
+ALF M +P + ++ + Q+G + + IH Y ++ + V L
Sbjct: 325 TIALFGEM-QIRGVKPDKFIVVTLLTGCAQSGALEQGKWIHNYIDENRIKVDAV-VGTAL 382
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
I+ YAKCGCI + ++F ++ K+ SWTSII G AM+G EA+E F+ MQ LKP
Sbjct: 383 IEMYAKCGCIEKSFEIFN--GLKEKDTTSWTSIICGLAMNGKPSEALELFKAMQTCGLKP 440
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +TF++VL+ACSH GLVEEG K F M + P+++HYGC ID+LGRAG L++AE++
Sbjct: 441 DDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPNLEHYGCFIDLLGRAGLLQEAEEL 500
Query: 247 ASGIPSEITNVVV--WRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+P++ ++V + LL AC +GN++MGER+ + +++ + L+ +I A
Sbjct: 501 VKKLPAQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVKSSDSSLHTLLASIYASA 560
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
R+ D ++R + + K PG S +
Sbjct: 561 DRWEDVRKVRNKMKDLGIKKVPGYSAI 587
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 133/286 (46%), Gaps = 46/286 (16%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N + + G +E +FEEMP R+ VSW +I GY R R A+ ++RRM
Sbjct: 147 NSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFEEAVDVYRRMWTESNE 206
Query: 81 EPSEITILAVFPAIWQNGDVRNCQL---IHGY-GEKRGFNAFHIHVSNCLIDTYAKCGCI 136
+P+E T+++ A +RN +L IH Y + + N L+D Y KCG +
Sbjct: 207 KPNEATVVSTLSAC---AVLRNLELGKEIHDYIASELDLTTI---MGNALLDMYCKCGHV 260
Query: 137 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER------------------ 178
A ++F+ ++V KN+ WTS+++G+ + G +A FER
Sbjct: 261 SVAREIFDAMTV--KNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQ 318
Query: 179 -------------MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIK 225
MQ +KP++ +++L C+ G +E+G K+ ++E + D
Sbjct: 319 FNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQG-KWIHNYIDENRIKVDAV 377
Query: 226 HYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
LI+M + G +E++ ++ +G+ + T W +++ + +G
Sbjct: 378 VGTALIEMYAKCGCIEKSFEIFNGLKEKDT--TSWTSIICGLAMNG 421
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 132/308 (42%), Gaps = 46/308 (14%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
+++F+ + + +L +N+MI VK G A SLF+++ R
Sbjct: 61 ANRIFNYIHDPSLFIYNLMIKAFVKSGSFRSAISLFQQL-------------------RE 101
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
+G P T V I G+VR + +H + K G F +V N
Sbjct: 102 HGVW-------------PDNYTYPYVLKGIGCIGEVREGEKVHAFVVKTGLE-FDPYVCN 147
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVV 183
+D YA+ G + ++FE++ ++ VSW +ISG+ +EAV+ + RM +
Sbjct: 148 SFMDMYAELGLVEGFTQVFEEMP--DRDAVSWNIMISGYVRCKRFEEAVDVYRRMWTESN 205
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
KPN T +S L+AC+ +E G + D + E ++ + + L+DM + G + A
Sbjct: 206 EKPNEATVVSTLSACAVLRNLELGKEIHDYIASELDLTTIMGN--ALLDMYCKCGHVSVA 263
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
++ + + NV W +++ G ++ + ER D VL ++ G
Sbjct: 264 REIFDAMT--VKNVNCWTSMVTGYVICGQLDQARNL------FERSPSRDIVLWTAMING 315
Query: 304 VWRYGDAE 311
++ E
Sbjct: 316 YVQFNRFE 323
>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 233 bits (595), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 130/330 (39%), Positives = 188/330 (56%), Gaps = 6/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
LK K+FD E++ V+WN +I G K GELE A LF ++P R++VSW +I GY +
Sbjct: 280 LKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQN 339
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
LF RM A E +P ++TI+ + A+ + G + + IHG K
Sbjct: 340 GDYVTVKCLFTRMFA-ENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKM-LTKIEAF 397
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LID Y KCG I A +F I K++ +WT++I+GFA HG G +A+E F MQ
Sbjct: 398 SGSALIDMYCKCGSIERAFVIFNQIP--EKDVTTWTTMITGFAFHGFGNKALELFSVMQA 455
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KPN VTF+SVL ACSH GLV+EGLK F M + + P ++HYGCL+D+L R+GRL
Sbjct: 456 ET-KPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLL 514
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A V +P E + +W +L AC H N+E+ ER ++L++E G Y+L+ N+
Sbjct: 515 DAIGVIEKMPMEPSR-SIWGAVLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVY 573
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ ++ +R V++ R K G S V
Sbjct: 574 ATCGRWSYSDSIREVMNSRGVKKIAGCSSV 603
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 134/283 (47%), Gaps = 40/283 (14%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I V G E AR LF+EM RNVVS+ +I G+ ++ G L LF M +
Sbjct: 167 NSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRS-HGL 225
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
EP + T+L + Q G+ + + +H EK + ++ + N L+D Y KC + A
Sbjct: 226 EPDDFTMLGLLLLCGQLGETKLGKSVHAQIEK-SIGSSNLILYNALLDMYVKCNELKLAR 284
Query: 141 KLFE---------------------------DI--SVERKNLVSWTSIISGFAMHGMGKE 171
K+F+ D+ + +++VSW S+ISG+A +G
Sbjct: 285 KVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVT 344
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD---KMVEECEVLPDIKHYG 228
F RM +KP++VT +++++A + G +++G KM+ + E
Sbjct: 345 VKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSG----S 400
Query: 229 CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
LIDM + G +E+A + + IP + +V W T++ +FHG
Sbjct: 401 ALIDMYCKCGSIERAFVIFNQIPEK--DVTTWTTMITGFAFHG 441
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 22/274 (8%)
Query: 33 LEYARSLFEEM-PCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVF 91
LE A LF P N+ + +I G+ N A ++R M+ T P T L +
Sbjct: 81 LELAILLFNHFTPYPNLYIFNTMILGFPFSNEK--AFTIYRSMLQ-NGTYPDRQTFLYLL 137
Query: 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151
+V+ IH + G + ++ N LI Y GC A +LF+++S +
Sbjct: 138 QTTKFVAEVKQ---IHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMS--DR 192
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
N+VS+ ++I GFA G +E F M+ L+P+ T L +L C G + G K
Sbjct: 193 NVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLG-KSV 251
Query: 212 DKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+E+ ++ Y L+DM + L+ A KV G P E + V W T++ + G
Sbjct: 252 HAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDG-PME-KDTVSWNTIIAGYAKVG 309
Query: 272 NVEMG-----ERVTRKIL---EMERGYG--GDYV 295
+E+ + TR I+ + GY GDYV
Sbjct: 310 ELELACDLFNQIPTRDIVSWNSLISGYAQNGDYV 343
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 233 bits (595), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 121/318 (38%), Positives = 189/318 (59%), Gaps = 5/318 (1%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E N V N ++ K G + A LFE MP +NVV+W II GY++ + ALALF
Sbjct: 354 ESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIE 413
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M A + +P I++V PA + + IHGY + GF + ++ V L+D YAKC
Sbjct: 414 MQA-QGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFES-NVVVGTGLVDIYAKC 471
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + +A KLFE + +++VSWT++I + +HG G++A+ F +MQ+ K + + F +
Sbjct: 472 GNVNTAQKLFERMP--EQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTA 529
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L ACSH GLV++GL++F M + + P ++HY CL+D+LGRAG L++A + + E
Sbjct: 530 ILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLE 589
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
+ VW LLGAC H N+E+GE+ + + E++ G YVL+ NI A R+ D +L
Sbjct: 590 -PDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKL 648
Query: 314 RRVVDERNALKFPGRSLV 331
R+++ E+ K PG S+V
Sbjct: 649 RKMMKEKGVKKQPGCSVV 666
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 146/275 (53%), Gaps = 11/275 (4%)
Query: 2 LKDGSKLFDELPER----NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDG 57
L+ G K+ +++ R +++ + + K G LE AR +F+ MP R+VVSW II G
Sbjct: 136 LQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAG 195
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
Y++ + ALALF M +P+ T+++V P + + IH Y + G +
Sbjct: 196 YSQNGQPYEALALFSEM-QVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIES 254
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
+ V N L++ YAKCG + +A KLFE + + +++ SW +II G++++ EA+ F
Sbjct: 255 -DVLVVNGLVNMYAKCGNVNTAHKLFERMPI--RDVASWNAIIGGYSLNSQHHEALAFFN 311
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
RMQ +KPN +T +SVL AC+H +E+G + + D+ L++M +
Sbjct: 312 RMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVG-NALVNMYAKC 370
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
G + A K+ +P + NVV W ++ S HG+
Sbjct: 371 GNVNSAYKLFERMPKK--NVVAWNAIISGYSQHGH 403
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 109/223 (48%), Gaps = 7/223 (3%)
Query: 47 NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLI 106
N V W I GY + N AL L+ +M P ++ L+V A D++ + +
Sbjct: 84 NAVVWKETIIGYVKNGFWNKALRLYYQMQRTG-INPDKLVFLSVIKACGSQSDLQAGRKV 142
Query: 107 HGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 166
H RGF + I V L Y KCG + +A ++F+ + ++++VSW +II+G++ +
Sbjct: 143 HEDIIARGFESDVI-VGTALASMYTKCGSLENARQVFDRMP--KRDVVSWNAIIAGYSQN 199
Query: 167 GMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH 226
G EA+ F MQ +KPN T +SV+ C+H +E+G + + + D+
Sbjct: 200 GQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRS-GIESDVLV 258
Query: 227 YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
L++M + G + A K+ +P I +V W ++G S
Sbjct: 259 VNGLVNMYAKCGNVNTAHKLFERMP--IRDVASWNAIIGGYSL 299
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
R N V W I G+ +G +A+ + +MQ+ + P+++ FLSV+ AC ++ G K
Sbjct: 82 RNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRK 141
Query: 210 FFDKMVE---ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
+ ++ E +V+ L M + G LE A +V +P +VV W ++
Sbjct: 142 VHEDIIARGFESDVIVGT----ALASMYTKCGSLENARQVFDRMPKR--DVVSWNAIIAG 195
Query: 267 CSFHGN 272
S +G
Sbjct: 196 YSQNGQ 201
>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 233 bits (595), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 130/330 (39%), Positives = 188/330 (56%), Gaps = 6/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
LK K+FD E++ V+WN +I G K GELE A LF ++P R++VSW +I GY +
Sbjct: 215 LKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQN 274
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
LF RM A E +P ++TI+ + A+ + G + + IHG K
Sbjct: 275 GDYVTVKCLFTRMFA-ENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKM-LTKIEAF 332
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LID Y KCG I A +F I K++ +WT++I+GFA HG G +A+E F MQ
Sbjct: 333 SGSALIDMYCKCGSIERAFVIFNQIP--EKDVTTWTTMITGFAFHGFGNKALELFSVMQA 390
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KPN VTF+SVL ACSH GLV+EGLK F M + + P ++HYGCL+D+L R+GRL
Sbjct: 391 ET-KPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLL 449
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A V +P E + +W +L AC H N+E+ ER ++L++E G Y+L+ N+
Sbjct: 450 DAIGVIEKMPMEPSR-SIWGAVLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVY 508
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ ++ +R V++ R K G S V
Sbjct: 509 ATCGRWSYSDSIREVMNSRGVKKIAGCSSV 538
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 134/283 (47%), Gaps = 40/283 (14%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I V G E AR LF+EM RNVVS+ +I G+ ++ G L LF M +
Sbjct: 102 NSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRS-HGL 160
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
EP + T+L + Q G+ + + +H EK + ++ + N L+D Y KC + A
Sbjct: 161 EPDDFTMLGLLLLCGQLGETKLGKSVHAQIEK-SIGSSNLILYNALLDMYVKCNELKLAR 219
Query: 141 KLFE---------------------------DI--SVERKNLVSWTSIISGFAMHGMGKE 171
K+F+ D+ + +++VSW S+ISG+A +G
Sbjct: 220 KVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVT 279
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD---KMVEECEVLPDIKHYG 228
F RM +KP++VT +++++A + G +++G KM+ + E
Sbjct: 280 VKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSG----S 335
Query: 229 CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
LIDM + G +E+A + + IP + +V W T++ +FHG
Sbjct: 336 ALIDMYCKCGSIERAFVIFNQIPEK--DVTTWTTMITGFAFHG 376
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 22/274 (8%)
Query: 33 LEYARSLFEEM-PCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVF 91
LE A LF P N+ + +I G+ N A ++R M+ T P T L +
Sbjct: 16 LELAILLFNHFTPYPNLYIFNTMILGFPFSNEK--AFTIYRSMLQ-NGTYPDRQTFLYLL 72
Query: 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151
+V+ IH + G + ++ N LI Y GC A +LF+++S +
Sbjct: 73 QTTKFVAEVKQ---IHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMS--DR 127
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
N+VS+ ++I GFA G +E F M+ L+P+ T L +L C G + G K
Sbjct: 128 NVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLG-KSV 186
Query: 212 DKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+E+ ++ Y L+DM + L+ A KV G P E + V W T++ + G
Sbjct: 187 HAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDG-PME-KDTVSWNTIIAGYAKVG 244
Query: 272 NVEMG-----ERVTRKIL---EMERGYG--GDYV 295
+E+ + TR I+ + GY GDYV
Sbjct: 245 ELELACDLFNQIPTRDIVSWNSLISGYAQNGDYV 278
>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
Length = 615
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 198/331 (59%), Gaps = 6/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D LFD++P R++VTW M+ G K G + A+SLF++MP R+VV++ ++ GY +
Sbjct: 270 IEDAKDLFDKMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQRDVVAYNSMMAGYVQN 329
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
A+ +F M + P E T++ V AI Q G + +H Y ++ F
Sbjct: 330 RYHMEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYTVEKKF-LLGGK 388
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LID Y+KCG I A+ +FE I E K++ W ++I G A+HG+G+ A + ++++
Sbjct: 389 LGVALIDMYSKCGSIQQAMGVFERI--ENKSIDHWNAMIGGLAIHGLGESAFDMLLQIER 446
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KP+ +TF+ VLNACSH GLV+EGL F+ M + ++ P ++HYGC++D+L R+GR+E
Sbjct: 447 RSIKPDDITFVGVLNACSHSGLVKEGLLCFELMKRKHKIEPRLQHYGCMVDILSRSGRIE 506
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG-GDYVLMYNI 300
A+ + +P E N V+WRT L ACS H E GE V + ++ ++ GY YVL+ N+
Sbjct: 507 LAKNLIEEMPIE-PNDVIWRTFLTACSHHKEFETGELVAKHLI-LQAGYNPSSYVLLSNM 564
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + + + R+R ++ ER K PG S +
Sbjct: 565 YASLGMWKEVRRVRTMMKERKIQKIPGCSWI 595
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 148/288 (51%), Gaps = 26/288 (9%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYTRMNRS 64
++FD + +R+ V++N MI G VK G +E AR LF+ MP +N++SW +I+GY + R+
Sbjct: 179 QVFDRMSQRDSVSYNSMIDGYVKCGLIESARELFDLMPSEKKNLISWNSMINGYAQ--RA 236
Query: 65 NG---ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+G A LF M E I+ ++ ++G + + + + +R +
Sbjct: 237 DGVDIASNLFDEM-----PEKDLISWNSLIDGYVKHGRIEDAKDLFDKMPRRDVVTW--- 288
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
++D YAK G + A LF+ + ++++V++ S+++G+ + EA++ F M+K
Sbjct: 289 --ATMVDGYAKLGFVHQAKSLFDQMP--QRDVVAYNSMMAGYVQNRYHMEAIDIFNDMEK 344
Query: 182 VV-LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
L P+ T + VL+A + G + + + VE+ + L K LIDM + G +
Sbjct: 345 ESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYTVEK-KFLLGGKLGVALIDMYSKCGSI 403
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
+QA V I E ++ W ++G + HG +GE +L++ER
Sbjct: 404 QQAMGVFERI--ENKSIDHWNAMIGGLAIHG---LGESAFDMLLQIER 446
>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 596
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 127/330 (38%), Positives = 201/330 (60%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D +FDE E ++V+WN MI G ++ G + A SLF +M RN +SW +I GY +
Sbjct: 143 LNDARWVFDESSELDVVSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQN 202
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ ALALFR M + EP+ +++V A Q G + + +H Y K+ I
Sbjct: 203 GQPKEALALFREMQMLD-QEPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSI- 260
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+S LID YAKCG I A++ F + ++++ ++T+ ISG AM+G +EA++ FE+M+
Sbjct: 261 LSAALIDMYAKCGSIDLAMQAFS--TSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKG 318
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ P+ V++++VL ACSH G VE+G +F M + + P++ HY C++D+LGRAG LE
Sbjct: 319 EGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDLLGRAGLLE 378
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AEK + +P + N V+W LLGAC +GN EMG+RV ++E ++ + G Y+L+ NI
Sbjct: 379 EAEKFVASMPIKPDN-VIWGALLGACRVYGNAEMGQRVGSLLVESDQNHDGRYILLSNIY 437
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + DAE++R+ + R + PG SL+
Sbjct: 438 AESMKGEDAEQVRKTMRRRKVDRVPGCSLI 467
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 124/324 (38%), Positives = 192/324 (59%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFD +P+ + V+WN +I G K G+++ A +LF +M +N +SWT +I GY + A
Sbjct: 201 LFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEA 260
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LF M + EP +++ A Q G + + IH Y K + + LI
Sbjct: 261 LQLFHEMQNSD-VEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSV-LGCVLI 318
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D YAKCG + AL++F++I +RK++ +WT++ISG+A HG G+EA+ F MQK+ +KPN
Sbjct: 319 DMYAKCGDMGEALEVFKNI--QRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPN 376
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TF +VL ACS+ GLVEEG F M + + P I+HYGC++D+L RAG L++A++
Sbjct: 377 VITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFI 436
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P + N V+W LL AC H N+E+GE + ++ ++ +GG YV NI A ++
Sbjct: 437 QEMPLK-PNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMGKKW 495
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
A RR++ E+ K PG S +
Sbjct: 496 DKAAETRRLMKEQGVAKVPGCSTI 519
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 134/286 (46%), Gaps = 39/286 (13%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACE-----YTEPSEITI 87
L YA+ +F+ + W +I G++ + +L L++RM+ C YT PS +
Sbjct: 94 LPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKA 153
Query: 88 LAVFPAI--------------WQNGDVRNCQLIHGYGEKRGFNAFHIHVS---------- 123
+ A+ ++N LI+ Y F H+
Sbjct: 154 CSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSW 213
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N +I YAK G + AL LF + VE KN +SWT++ISG+ GM KEA++ F MQ
Sbjct: 214 NSVIKGYAKAGKMDIALTLFRKM-VE-KNAISWTTMISGYVQAGMHKEALQLFHEMQNSD 271
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC-LIDMLGRAGRLEQ 242
++P+ V+ + L+AC+ G +E+G K+ + + + D GC LIDM + G + +
Sbjct: 272 VEPDNVSLANALSACAQLGALEQG-KWIHSYLTKTRIRMD-SVLGCVLIDMYAKCGDMGE 329
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
A +V I + +V W L+ ++HG+ G K +EM++
Sbjct: 330 ALEVFKNIQRK--SVQAWTALISGYAYHGH---GREAISKFMEMQK 370
>gi|297797141|ref|XP_002866455.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
gi|297312290|gb|EFH42714.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
Length = 1401
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 121/317 (38%), Positives = 195/317 (61%), Gaps = 11/317 (3%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFDE P+R++VT+NV+I GLVK E+ AR LF+ MP R++VSW +I GY +MN+
Sbjct: 587 QLFDENPQRDVVTYNVLIDGLVKACEIVRARELFDSMPFRDLVSWNSLIAGYAQMNQCRE 646
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF--NAFHIHVSN 124
A++LF M+ +P + I++ A Q+GD+ + IH Y +K+ ++F ++
Sbjct: 647 AISLFDEMIGLGL-KPDNVAIVSTLSACAQSGDLEKGKAIHDYTKKKRLFIDSF---LAT 702
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
L+D YAKCG I +A+++F S K L +W ++I+G AMHG G+ V+ F +M +
Sbjct: 703 GLVDFYAKCGFIDTAMEIFHLSS--DKTLFTWNAMITGLAMHGNGELTVDYFHKMVSSGI 760
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
KP+ V+F+SVL CSH GLV E K FD+M +V ++KHYGC+ D+LGRAG +E+A
Sbjct: 761 KPDGVSFISVLVGCSHSGLVGEARKLFDQMRSLYDVDREMKHYGCMADLLGRAGLIEEAA 820
Query: 245 KVASGIPSE---ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
++ +P + ++ W LLG C HGN+E+ E+ +++ + GG Y +M +
Sbjct: 821 EMIEQMPKDGGKREKLLAWSGLLGGCRIHGNIEVAEKAAKRVKALSPEDGGVYKVMVEMY 880
Query: 302 AGVWRYGDAERLRRVVD 318
A R+ D ++R +++
Sbjct: 881 ANAERWEDVVKVREMIE 897
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 125/332 (37%), Positives = 194/332 (58%), Gaps = 9/332 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+K LFD LP R++V+WN MI G +K G +E A +F+ MP +NV+SWT +I G+ R
Sbjct: 162 IKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRT 221
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL L ++M+ +P +IT+ A G + + IH Y G N I
Sbjct: 222 GMHKEALCLLQQMLVAG-IKPDKITLSCSLSACAGLGALEQGKWIHTY---IGKNKIKID 277
Query: 122 -VSNC-LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
V C LID Y KCG + AL +F + E+K + +WT+II GFA+HG G EA++ F +M
Sbjct: 278 PVLGCALIDMYVKCGEMKKALLVFSKL--EKKCVYTWTAIIGGFAVHGKGSEALDWFTQM 335
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
QK +KP TF +VL ACSH GLVEEG F+ M + P ++HYGC++D+LGRAG
Sbjct: 336 QKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVMEHYGCMVDLLGRAGF 395
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
L++A++ +P + N +W +LL AC H ++E+G+ + + ++E++ + G Y+ + +
Sbjct: 396 LKEAKEFVESMPIK-PNAAIWGSLLNACHLHKHLELGKEIGKFLIELDPEHDGRYIHLAS 454
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
I A + +A ++R + + L PG S +
Sbjct: 455 IHAAAGEWDEASQVRSHIKNKGLLNLPGCSTI 486
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 134/300 (44%), Gaps = 39/300 (13%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
LK G+ R L T+ M ++ L YAR +F+ + N V W +I Y+
Sbjct: 34 LLKKGTIRHKLTVSRLLTTYASM-----EFSNLTYARMVFDRISSPNTVMWNTMIRAYSN 88
Query: 61 MNRSNGALALFRRMVACE-----YTEPSEITILAVFPAIWQNGDVRNCQLIHGYGE---- 111
N AL L+ +M+ YT P + + A+ + + + G+G
Sbjct: 89 SNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVYA 148
Query: 112 --------------KRGFNAFHIHVS------NCLIDTYAKCGCIFSALKLFEDISVERK 151
K F + S N +ID Y KCG + A K+F+ ++ K
Sbjct: 149 TNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQ--AMPEK 206
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
N++SWTS+I GF GM KEA+ ++M +KP+++T L+AC+ G +E+G K+
Sbjct: 207 NVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQG-KWI 265
Query: 212 DKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ + ++ D LIDM + G +++A V S + E V W ++G + HG
Sbjct: 266 HTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKL--EKKCVYTWTAIIGGFAVHG 323
>gi|2583119|gb|AAB82628.1| hypothetical protein [Arabidopsis thaliana]
Length = 606
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 201/332 (60%), Gaps = 8/332 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D LFD +P R++VTW MI G K G + +A++LF++MP R+VV++ ++ GY +
Sbjct: 261 IEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQN 320
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY-GEKRGFNAFHI 120
AL +F M + P + T++ V PAI Q G + +H Y EK+ + +
Sbjct: 321 KYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKL 380
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V+ LID Y+KCG I A+ +FE I E K++ W ++I G A+HG+G+ A + +++
Sbjct: 381 GVA--LIDMYSKCGSIQHAMLVFEGI--ENKSIDHWNAMIGGLAIHGLGESAFDMLLQIE 436
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
++ LKP+ +TF+ VLNACSH GLV+EGL F+ M + ++ P ++HYGC++D+L R+G +
Sbjct: 437 RLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSI 496
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG-GDYVLMYN 299
E A+ + +P E N V+WRT L ACS H E GE V + ++ ++ GY YVL+ N
Sbjct: 497 ELAKNLIEEMPVE-PNDVIWRTFLTACSHHKEFETGELVAKHLI-LQAGYNPSSYVLLSN 554
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ A + D R+R ++ ER K PG S +
Sbjct: 555 MYASFGMWKDVRRVRTMMKERKIEKIPGCSWI 586
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 143/286 (50%), Gaps = 22/286 (7%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDGYTRMNRS 64
++FD +P+R+ V++N MI G VK G + AR LF+ MP +N++SW +I GY + +
Sbjct: 170 QMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDG 229
Query: 65 -NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
+ A LF M E I+ ++ ++G + + + + +R +
Sbjct: 230 VDIASKLFADM-----PEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTW----- 279
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
+ID YAK G + A LF+ + +++V++ S+++G+ + EA+E F M+K
Sbjct: 280 ATMIDGYAKLGFVHHAKTLFDQMP--HRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKES 337
Query: 184 -LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
L P+ T + VL A + G + + + +VE+ L K LIDM + G ++
Sbjct: 338 HLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGG-KLGVALIDMYSKCGSIQH 396
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
A V GI E ++ W ++G + HG +GE +L++ER
Sbjct: 397 AMLVFEGI--ENKSIDHWNAMIGGLAIHG---LGESAFDMLLQIER 437
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 94/214 (43%), Gaps = 42/214 (19%)
Query: 84 EITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC-------- 135
+ ++ V A + G V+ IHG+ +K G + + + NCLI Y KCGC
Sbjct: 114 KFSLSLVLKACSRLGFVKGGMQIHGFLKKTGLWS-DLFLQNCLIGLYLKCGCLGLSRQMF 172
Query: 136 -----------------------IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEA 172
I SA +LF+ + +E KNL+SW S+ISG+A +
Sbjct: 173 DRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYA---QTSDG 229
Query: 173 VENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLID 232
V+ ++ + + + +++ S+++ G +E+ FD M D+ + +ID
Sbjct: 230 VDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRR-----DVVTWATMID 284
Query: 233 MLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
+ G + A+ + +P +VV + +++
Sbjct: 285 GYAKLGFVHHAKTLFDQMPHR--DVVAYNSMMAG 316
>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 115/307 (37%), Positives = 192/307 (62%), Gaps = 5/307 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LF+ +PERN+V+W+ M++G K G++E AR LF+ MP +N+VSWT I+ GY + A
Sbjct: 65 LFESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDA 124
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
+ F +M +P + T++++ + ++G + + +H E+ + ++VSN L+
Sbjct: 125 IRSFEQMEEAGL-KPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKC-SVNVSNALV 182
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D YAKCG + AL +F +S +K+LVSW ++ G AMHG G++A++ F M++ +P+
Sbjct: 183 DMYAKCGQVDRALSVFNGMS--KKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPD 240
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+VT ++VL AC H G V+EG+++F+ M + ++P I+HYGC++D+LGR GRL++A ++
Sbjct: 241 KVTLVAVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLV 300
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P E NVV+W TLLGAC H V + E V + ++E G+Y L+ NI A +
Sbjct: 301 QSMPVE-PNVVIWGTLLGACRMHNAVGLAEEVLDCLFKLEPSDPGNYSLLSNIFASAGDW 359
Query: 308 GDAERLR 314
+R
Sbjct: 360 SSVANVR 366
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 148/303 (48%), Gaps = 50/303 (16%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LF + ER++V+WN MI GL+K GEL A LF+EMP ++ VSW I+DGY + N
Sbjct: 2 RLFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMNK 61
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A LF M E +++ W +
Sbjct: 62 AFGLFESM--------PERNVVS-----WST----------------------------M 80
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+ Y K G + A LF+ + V KNLVSWT I+SG+A+ G+ K+A+ +FE+M++ LKP
Sbjct: 81 VSGYCKAGDMEMARMLFDRMPV--KNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKP 138
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ T +S+L +C+ GL+ G K +E + L+DM + G++++A V
Sbjct: 139 DDGTVISILASCAESGLLGLG-KRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSV 197
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM-ERGYGGDYVLMYNILAGVW 305
+G+ + ++V W +L + HG+ GE+ + M + G+ D V + +L
Sbjct: 198 FNGMSKK--DLVSWNCMLQGLAMHGH---GEKALQLFSIMRQEGFRPDKVTLVAVLCACV 252
Query: 306 RYG 308
G
Sbjct: 253 HAG 255
>gi|147798551|emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera]
Length = 690
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 125/330 (37%), Positives = 189/330 (57%), Gaps = 14/330 (4%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+++ LF+ +P+R++V+W M+ G K GE++ AR LF+EMP R+V+S ++ GY +
Sbjct: 325 MENAHHLFNXMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQN 384
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL F M++ + P T+L AI Q G +H Y E GF +
Sbjct: 385 GXLMEALXFFHDMLSXKELFPXNATLLITLSAIAQLGHFDEGVALHCYIEDNGF-SLSEK 443
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LID YAKCG I +AL + W +IJ G A+HG+G+ A E F M+K
Sbjct: 444 LGXALIDMYAKCGSIDNAL------------IDHWNAIJXGLAIHGLGEVAFELFMEMEK 491
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ +KPB +TF+ VLNAC+H GLV+EGL F M +V P ++HYGC++D+LGRAG +E
Sbjct: 492 LFVKPBDITFIGVLNACNHAGLVKEGLMXFXLMRXVHKVEPKLQHYGCMVDILGRAGHVE 551
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+ +K +P E N VVWRTLL AC H N +GE V + ++ ++ YVL+ NI
Sbjct: 552 EXKKFVEKMPIE-PNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSYNPSSYVLLSNIY 610
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + D R+R ++ +R+ K PG S +
Sbjct: 611 AXFGMWNDVYRIRMMMKQRDLKKIPGCSQI 640
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 131/286 (45%), Gaps = 32/286 (11%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYTRMNRS 64
+LFD + R+ V++N MI G VK G ++ AR LF+ MP +N++SW +I GY R
Sbjct: 234 QLFDRMMXRDSVSFNSMIDGYVKHGMVKSARELFDVMPMEQKNLISWNSMISGYARSEEG 293
Query: 65 -NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
A LF M + I+ ++ + G + N + KR ++ +
Sbjct: 294 LRVAWELFEEMPKRDL-----ISWNSMIDGCVKCGKMENAHHLFNXMPKRDVVSW----A 344
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N ++D YAK G I A LF+++ ++++S ++++G+ +G EA+ F M
Sbjct: 345 N-MVDGYAKLGEIDIARGLFDEMP--ERDVISCNAMMAGYVQNGXLMEALXFFHDMLSXK 401
Query: 184 -LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
L P T L L+A + G +EG+ + + L + K LIDM + G ++
Sbjct: 402 ELFPXNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSE-KLGXALIDMYAKCGSIDN 460
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
A + W +J + HG +GE +EME+
Sbjct: 461 AL------------IDHWNAIJXGLAIHG---LGEVAFELFMEMEK 491
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 127/284 (44%), Gaps = 35/284 (12%)
Query: 33 LEYARSLF-------EEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEI 85
+E+AR LF + N W II ++ A +F M+ +
Sbjct: 121 VEFARYLFMSRHFGRKHRKQDNPFLWNAIIKSFSHGEDPXEAFXIFNLMLENGVC-VDKF 179
Query: 86 TILAVFPAIWQNGDVRNCQLIHGY--GEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLF 143
+ V A + G ++ IHG + G + F + NCL+ Y +CGC+ A +LF
Sbjct: 180 SFSLVLKACSRLGLIKEGMQIHGLLGXMEIGSDVF---LQNCLMCLYLRCGCLGIARQLF 236
Query: 144 EDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGL 203
+ + ++ VS+ S+I G+ HGM K A E F+ M + + N +++ S+++ +
Sbjct: 237 DRMMX--RDSVSFNSMIDGYVKHGMVKSARELFDVMP--MEQKNLISWNSMISGYARS-- 290
Query: 204 VEEGLKFFDKMVEECEVLP--DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWR 261
EEGL+ ++ EE +P D+ + +ID + G++E A + + +P +VV W
Sbjct: 291 -EEGLRVAWELFEE---MPKRDLISWNSMIDGCVKCGKMENAHHLFNXMPKR--DVVSWA 344
Query: 262 TLLGACSFHGNV--------EMGERVTRKILEMERGYGGDYVLM 297
++ + G + EM ER M GY + LM
Sbjct: 345 NMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGXLM 388
>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 121/335 (36%), Positives = 196/335 (58%), Gaps = 8/335 (2%)
Query: 1 FLKDGSKLFDELPERNL----VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIID 56
L +G ++ + + E ++ N ++ K G + A +F EM ++++SW +I
Sbjct: 412 LLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIG 471
Query: 57 GYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN 116
GY++ +N AL+LF ++ + P E T+ V PA + IHGY + G+
Sbjct: 472 GYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYF 531
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
+ HV+N L+D YAKCG + A LF+DI+ K+LVSWT +I+G+ MHG GKEA+ F
Sbjct: 532 SDR-HVANSLVDMYAKCGALLLARLLFDDIT--SKDLVSWTVMIAGYGMHGFGKEAIALF 588
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
+M++ ++P+ ++F+S+L ACSH GLV+EG +FF+ M EC++ P ++HY C++DML R
Sbjct: 589 NQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLAR 648
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
G L +A + +P + +W LL C H +V++ ERV K+ E+E G YVL
Sbjct: 649 TGNLSKAYRFIENMPIP-PDATIWGALLCGCRIHHDVKLAERVAEKVFELEPENTGYYVL 707
Query: 297 MYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
M NI A ++ + +RLR+ + +R K PG S +
Sbjct: 708 MANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWI 742
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 143/255 (56%), Gaps = 8/255 (3%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
ERN V N ++ +K ++ AR +F+EM R+V+SW II+GY + L++F +
Sbjct: 228 ERNSVG-NSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQ 286
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M+ E TI++VF + + + +H +G K F+ N L+D Y+KC
Sbjct: 287 MLF-SGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSR-EDRFCNTLLDMYSKC 344
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + SA +F ++S +++VS+TS+I+G+A G+ EAV+ FE M++ + P+ T +
Sbjct: 345 GDLDSAKVVFREMS--GRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTA 402
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VLN C+ L++EG K + ++E ++ DI L+DM + G + +AE V S +
Sbjct: 403 VLNCCARNRLLDEG-KRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEM--R 459
Query: 254 ITNVVVWRTLLGACS 268
+ +++ W T++G S
Sbjct: 460 VKDIISWNTVIGGYS 474
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 106/216 (49%), Gaps = 5/216 (2%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G+L+ A +F+++ + W +++ + +G++ LF++M++ E T V
Sbjct: 143 GDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMS-SGVEMDSYTFSCV 201
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
+ V + +HGY K GF + V N L+ Y K + SA K+F++++
Sbjct: 202 SKSFSSLRSVNGGEQLHGYILKSGFGERN-SVGNSLVAFYLKNHRVDSARKVFDEMT--E 258
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
++++SW SII+G+ +G+ ++ + F +M ++ + T +SV C+ L+ G
Sbjct: 259 RDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAV 318
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
V+ C D + L+DM + G L+ A+ V
Sbjct: 319 HCFGVKACFSRED-RFCNTLLDMYSKCGDLDSAKVV 353
>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 593
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/318 (37%), Positives = 191/318 (60%), Gaps = 5/318 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++F ++ E+N+V+WN MI G K G L A+ LF EMP R+V+SWT +I GY+ +
Sbjct: 270 RVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAE 329
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ LF+ M+ +P EIT+ A G + + +H Y K + + V N L
Sbjct: 330 AVKLFQEMMV-SMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKS-DVFVGNSL 387
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y KCG + AL++F D+ + ++ VSWTSIISG A++G + A+ F++M K + P
Sbjct: 388 IDMYCKCGVVEKALQVFNDM--KTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICP 445
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
TF+ VL AC+H GLV++G++ F M + P++KHYGC++D+L R+G L+ A
Sbjct: 446 THGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNF 505
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P + +VV+WR LL AC HGN+ + E V++K+L ++ G+YVL + AG R
Sbjct: 506 IKKMPI-VPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLDPSNNGNYVLSSSTYAGSDR 564
Query: 307 YGDAERLRRVVDERNALK 324
+ D ++R++++ N K
Sbjct: 565 WDDVIKIRKLMEVTNLQK 582
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 146/302 (48%), Gaps = 36/302 (11%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E L N +I V +GEL A+ +F+ M R+VVSW II GY + NR L LFR
Sbjct: 145 ESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFRE 204
Query: 74 MVACEYTEPSEITILAV----FPAIWQNGD---------------VRNCQLIHGYGEKRG 114
M A S + A+ F + W+ GD LI YG +RG
Sbjct: 205 MQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYG-RRG 263
Query: 115 FNAF-----------HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 163
F +I N +I YAK G + +A KLF ++ ++++SWTS+I G+
Sbjct: 264 MIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEM--PSRDVISWTSMIIGY 321
Query: 164 AMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD 223
++ EAV+ F+ M ++KP+ +T + L+AC+H G ++ G D + + ++ D
Sbjct: 322 SLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHD-YIRKHDIKSD 380
Query: 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
+ LIDM + G +E+A +V + + + + V W +++ + +G E V ++
Sbjct: 381 VFVGNSLIDMYCKCGVVEKALQVFNDMKTR--DSVSWTSIISGLAVNGFAESALNVFDQM 438
Query: 284 LE 285
L+
Sbjct: 439 LK 440
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 126/248 (50%), Gaps = 7/248 (2%)
Query: 32 ELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVF 91
L A +F ++ ++ W +I G ++ +R N A+ + M + + S +T + +F
Sbjct: 62 SLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYY-KGIQGSHLTFIFLF 120
Query: 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151
+ + DVR Q++ + K GF ++ + VSN LI Y G + A K+F+ + +ER
Sbjct: 121 KSCARVSDVRQGQMVRVHSMKLGFESY-LFVSNALIHMYVCFGELAMAQKVFDGM-LER- 177
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
++VSW SII G+ K+ ++ F MQ + ++ + VT + ++A E G +
Sbjct: 178 DVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMG-DYL 236
Query: 212 DKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
K ++E V+ D+ LIDM GR G ++ A +V + + N+V W ++ + G
Sbjct: 237 VKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEK--NIVSWNAMIMGYAKVG 294
Query: 272 NVEMGERV 279
N+ +++
Sbjct: 295 NLVAAKKL 302
>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
Length = 446
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/334 (40%), Positives = 200/334 (59%), Gaps = 10/334 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++ ++F+ +P+RN W+ MI+G K G ++ ARS+F+ +P RN+V+W +I GY +
Sbjct: 111 MEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQN 170
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
S AL F +M A E EP E+TI +V A Q G + + IH +G +
Sbjct: 171 GFSEEALEAFGKMQA-EGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIK-LNQF 228
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N L+D YAKCG + +A +FE ++ +N W S+ISGFA+HG KEA+E F RM+
Sbjct: 229 VLNGLVDMYAKCGDLANARLIFEGMA--HRNRACWNSMISGFAIHGQSKEALEFFGRMED 286
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
P+ +TFLSVL+AC+HGG V GL+ F +M E+ + IKHYGCLID+LGRAGR++
Sbjct: 287 SHEGPDEITFLSVLSACAHGGFVNAGLEIFSRM-EKYGLTTGIKHYGCLIDLLGRAGRIK 345
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME----RGYGGDYVLM 297
+A + +P + N VVW LLGAC H ++EM +RV +I++++ G YVL+
Sbjct: 346 EAYDLIKRMPVK-PNDVVWGALLGACRVHLDMEMADRVVEEIVKVDSNISSGCDSHYVLL 404
Query: 298 YNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
NI A R+ AE++R + + K G S +
Sbjct: 405 SNIYAASDRWEKAEKMRMEMANKGFQKTSGCSSI 438
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 88/269 (32%), Positives = 134/269 (49%), Gaps = 13/269 (4%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
D K+FD +PERN VTWN MI G + G+ + A LFE+M R V+W +IDG+ R
Sbjct: 18 DSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGD 77
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
+ A F + PSE+ + + + +G RN ++ G +
Sbjct: 78 TETARRFFDDV-------PSELRNVVTW-TVMVDGYARNAEMEAAREVFEGMPQRNFFAW 129
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
+ +I Y K G + A +F+ I V +NLV+W S+ISG+A +G +EA+E F +MQ
Sbjct: 130 SSMISGYCKKGNVKEARSIFDRIPV--RNLVNWNSLISGYAQNGFSEEALEAFGKMQAEG 187
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
+P+ VT SVL+ACS GL++ G K M + L G L+DM + G L A
Sbjct: 188 FEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNG-LVDMYAKCGDLANA 246
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGN 272
+ G+ N W +++ + HG
Sbjct: 247 RLIFEGMAHR--NRACWNSMISGFAIHGQ 273
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 11/162 (6%)
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ L+ YAKCG + + K+F+ + +N V+W ++I G+ +G K AV FE+M
Sbjct: 2 IGTSLVCMYAKCGNVVDSRKVFD--YMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMS- 58
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
VT++ +++ + G E +FFD + E L ++ + ++D R +E
Sbjct: 59 ---IRTAVTWIEMIDGFARSGDTETARRFFDDVPSE---LRNVVTWTVMVDGYARNAEME 112
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
A +V G+P N W +++ GNV+ + +I
Sbjct: 113 AAREVFEGMPQR--NFFAWSSMISGYCKKGNVKEARSIFDRI 152
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 124/316 (39%), Positives = 191/316 (60%), Gaps = 4/316 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL N +I K G+L+ AR LFE + ++++SW +I GY+ MN ALALFR+M
Sbjct: 298 NLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQ 357
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
EP+++T +++ PA G + + IH Y +K+ + + LID YAKCG
Sbjct: 358 QSN-VEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGN 416
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
I +A ++F ++ K+L SW ++ISG AMHG A+E F +M+ +P+ +TF+ VL
Sbjct: 417 IEAAKQVFA--GMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVL 474
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+ACSH GLVE G + F MVE+ ++ P ++HYGC+ID+LGRAG ++AE + + +
Sbjct: 475 SACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMK-P 533
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
+ +W +LLGAC HGNVE+GE + + E+E G YVL+ NI A R+ D R+R
Sbjct: 534 DGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRT 593
Query: 316 VVDERNALKFPGRSLV 331
++++ K PG S +
Sbjct: 594 KLNDKGMKKVPGCSSI 609
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 162/308 (52%), Gaps = 8/308 (2%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+F + R+ V++ +ITG G L+ AR LFEE+P R+ VSW +I GY + R A
Sbjct: 189 VFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEA 248
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
LA F+ M P+E T++ V A Q+G + + + E G + ++ + N LI
Sbjct: 249 LAFFQEMKRAN-VAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGS-NLRLVNALI 306
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y+KCG + A LFE I K+++SW +I G++ KEA+ F +MQ+ ++PN
Sbjct: 307 DMYSKCGDLDKARDLFEGIC--EKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPN 364
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
VTF+S+L AC++ G ++ G + ++ L + + LIDM + G +E A++V
Sbjct: 365 DVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVF 424
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+G+ + ++ W ++ + HG+ M + R++ + G+ D + +L+
Sbjct: 425 AGMKPK--SLGSWNAMISGLAMHGHANMALELFRQM--RDEGFEPDDITFVGVLSACSHA 480
Query: 308 GDAERLRR 315
G E R+
Sbjct: 481 GLVELGRQ 488
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 134/290 (46%), Gaps = 36/290 (12%)
Query: 26 GLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEI 85
+ +G L YA LFE + N W +I G + + GA+ + RM+ C EP+
Sbjct: 75 AISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCG-VEPNSY 133
Query: 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA-FHIHVS--------------------- 123
T + + + G + + IHG+ K G + +H S
Sbjct: 134 TFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKS 193
Query: 124 --------NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
LI Y GC+ A +LFE+I V ++ VSW ++I+G+A G +EA+
Sbjct: 194 SLRDAVSFTALITGYTLRGCLDDARRLFEEIPV--RDAVSWNAMIAGYAQSGRFEEALAF 251
Query: 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
F+ M++ + PN T ++VL+AC+ G +E G + +E+ + +++ LIDM
Sbjct: 252 FQEMKRANVAPNESTMVTVLSACAQSGSLELG-NWVRSWIEDHGLGSNLRLVNALIDMYS 310
Query: 236 RAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
+ G L++A + GI + +++ W ++G S + + + RK+ +
Sbjct: 311 KCGDLDKARDLFEGICEK--DIISWNVMIGGYSHMNSYKEALALFRKMQQ 358
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 12/187 (6%)
Query: 101 RNCQLIHGYGEKRGFNAFHIHVSN----CLIDTYAKCGCIFSALKLFEDISVERKNLVSW 156
+N + IH K G + +S C I + G + AL LFE S+E+ N W
Sbjct: 46 QNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPF---GNLSYALLLFE--SIEQPNQFIW 100
Query: 157 TSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVE 216
++I G ++ A++ + RM ++PN TF +L +C+ G +EG K V
Sbjct: 101 NTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEG-KQIHGHVL 159
Query: 217 ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMG 276
+ + D + LI+M + G L AE V S S + + V + L+ + G ++
Sbjct: 160 KLGLESDPFVHTSLINMYAQNGELGYAELVFS--KSSLRDAVSFTALITGYTLRGCLDDA 217
Query: 277 ERVTRKI 283
R+ +I
Sbjct: 218 RRLFEEI 224
>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
Length = 617
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/330 (38%), Positives = 198/330 (60%), Gaps = 8/330 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D LFD +P R++VTW MI G K G + A++LF++MP R+VVS+ ++ GY +
Sbjct: 272 IEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMMAGYVQN 331
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY-GEKRGFNAFHI 120
AL +F M + P E T++ V AI Q G + +H Y EK+ F +
Sbjct: 332 KYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKL 391
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V+ LID Y+KCG I A+ +FE I E K++ W ++I G A+HG+G+ A + +++
Sbjct: 392 GVA--LIDMYSKCGSIQHAMLVFEGI--ENKSIDHWNAMIGGLAIHGLGESAFDMLLQIE 447
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ +KP+ +TF+ VLNACSH GLV+EGL F+ M + ++ P ++HYGC++D+L R+G +
Sbjct: 448 RRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSI 507
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG-GDYVLMYN 299
E A+ + +P E N V+WRT L AC+ H E GE V + ++ ++ GY YVL+ N
Sbjct: 508 ELAKNLIQEMPIE-PNDVIWRTFLTACNHHKEFETGELVGKHLI-LQAGYNPSSYVLLSN 565
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRS 329
+ A ++ D R+R ++ ER K PG S
Sbjct: 566 MYASFGKWKDVRRIRTMMKERKIEKIPGCS 595
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 145/286 (50%), Gaps = 22/286 (7%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDGYTRMNRS 64
++FD +P+R+ V++N MI G VK G +E AR LF+ MP +N++SW II GY + +
Sbjct: 181 QIFDRMPQRDSVSFNSMIDGYVKRGLIESARELFDLMPREVKNLISWNSIISGYAQTSDG 240
Query: 65 -NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
+ A LF E E I+ ++ ++G + + + + +R +
Sbjct: 241 VDIASNLF-----AEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDAMPRRDVVTW----- 290
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
+ID YAK G + A LF+ + +++VS+ S+++G+ + EA+E F M+K
Sbjct: 291 ATMIDGYAKLGFVHQAKTLFDQMP--HRDVVSYNSMMAGYVQNKYHMEALEIFSDMEKES 348
Query: 184 -LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
L P+ T + VL+A + G + + + +VE+ L K LIDM + G ++
Sbjct: 349 HLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGG-KLGVALIDMYSKCGSIQH 407
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
A V GI E ++ W ++G + HG +GE +L++ER
Sbjct: 408 AMLVFEGI--ENKSIDHWNAMIGGLAIHG---LGESAFDMLLQIER 448
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 119/315 (37%), Positives = 200/315 (63%), Gaps = 5/315 (1%)
Query: 17 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVA 76
+V WNVMI G ++ G+ + AR LF++M R+VVSW +I GY+ A+ +FR M
Sbjct: 208 IVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKK 267
Query: 77 CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136
+ P+ +T+++V PAI + G + + +H Y E G + + + LID Y+KCG I
Sbjct: 268 GD-IRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDV-LGSALIDMYSKCGII 325
Query: 137 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLN 196
A+ +FE + R+N+++W+++I+GFA+HG +A++ F +M++ ++P+ V ++++L
Sbjct: 326 EKAIHVFE--RLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLT 383
Query: 197 ACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256
ACSHGGLVEEG ++F +MV + P I+HYGC++D+LGR+G L++AE+ +P + +
Sbjct: 384 ACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDD 443
Query: 257 VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRV 316
V+W+ LLGAC GNVEMG+RV +++M G YV + N+ A + + +R
Sbjct: 444 -VIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLR 502
Query: 317 VDERNALKFPGRSLV 331
+ E++ K PG SL+
Sbjct: 503 MKEKDIRKDPGCSLI 517
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 132/286 (46%), Gaps = 49/286 (17%)
Query: 32 ELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG--ALALFRRMVACEYTEPSEITILA 89
+L+YA +F +MP RN SW II G++ + A+ LF M++ E+ EP+ T +
Sbjct: 74 DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133
Query: 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE 149
V A + G ++ + IHG K GF +SN L+ Y CG + A LF +E
Sbjct: 134 VLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSN-LVRMYVMCGFMKDARVLFYKNIIE 192
Query: 150 R-------------------------------------------KNLVSWTSIISGFAMH 166
+ +++VSW ++ISG++++
Sbjct: 193 KDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLN 252
Query: 167 GMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH 226
G K+AVE F M+K ++PN VT +SVL A S G +E G ++ E+ + D
Sbjct: 253 GFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG-EWLHLYAEDSGIRIDDVL 311
Query: 227 YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
LIDM + G +E+A V +P E NV+ W ++ + HG
Sbjct: 312 GSALIDMYSKCGIIEKAIHVFERLPRE--NVITWSAMINGFAIHGQ 355
>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
[Vitis vinifera]
Length = 575
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/329 (40%), Positives = 198/329 (60%), Gaps = 10/329 (3%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++F+ +P+RN W+ MI+G K G ++ ARS+F+ +P RN+V+W +I GY + S
Sbjct: 245 EVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEE 304
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL F +M A E EP E+TI +V A Q G + + IH +G + V N L
Sbjct: 305 ALEAFGKMQA-EGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIK-LNQFVLNGL 362
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+D YAKCG + +A +FE ++ +N W S+ISGFA+HG KEA+E F RM+ P
Sbjct: 363 VDMYAKCGDLANARLIFEGMA--HRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGP 420
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +TFLSVL+AC+HGG V GL+ F +M E+ + IKHYGCLID+LGRAGR+++A +
Sbjct: 421 DEITFLSVLSACAHGGFVNAGLEIFSRM-EKYGLTTGIKHYGCLIDLLGRAGRIKEAYDL 479
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME----RGYGGDYVLMYNILA 302
+P + N VVW LLGAC H ++EM +RV +I++++ G YVL+ NI A
Sbjct: 480 IKRMPVK-PNDVVWGALLGACRVHLDMEMADRVVEEIVKVDSNISSGCDSHYVLLSNIYA 538
Query: 303 GVWRYGDAERLRRVVDERNALKFPGRSLV 331
R+ AE++R + + K G S +
Sbjct: 539 ASDRWEKAEKMRMEMANKGFQKTSGCSSI 567
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 88/269 (32%), Positives = 134/269 (49%), Gaps = 13/269 (4%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
D K+FD +PERN VTWN MI G + G+ + A LFE+M R V+W +IDG+ R
Sbjct: 147 DSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGD 206
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
+ A F + PSE+ + + + +G RN ++ G +
Sbjct: 207 TETARRFFDDV-------PSELRNVVTW-TVMVDGYARNAEMEAAREVFEGMPQRNFFAW 258
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
+ +I Y K G + A +F+ I V +NLV+W S+ISG+A +G +EA+E F +MQ
Sbjct: 259 SSMISGYCKKGNVKEARSIFDRIPV--RNLVNWNSLISGYAQNGFSEEALEAFGKMQAEG 316
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
+P+ VT SVL+ACS GL++ G K M + L G L+DM + G L A
Sbjct: 317 FEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNG-LVDMYAKCGDLANA 375
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGN 272
+ G+ N W +++ + HG
Sbjct: 376 RLIFEGMAHR--NRACWNSMISGFAIHGQ 402
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 119/318 (37%), Positives = 191/318 (60%), Gaps = 5/318 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+++D+LP +++V M++G K G ++ AR +F+ M +++V W+ +I GY +
Sbjct: 273 EVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLE 332
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL LF M P +IT+L+V A G + + IH Y +K GF + ++N L
Sbjct: 333 ALQLFNEMQRRRIV-PDQITMLSVISACANVGALVQAKWIHTYADKNGFGRT-LPINNAL 390
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YAKCG + A ++FE++ RKN++SW+S+I+ FAMHG A+ F RM++ ++P
Sbjct: 391 IDMYAKCGNLVKAREVFENMP--RKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEP 448
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N VTF+ VL ACSH GLVEEG KFF M+ E + P +HYGC++D+ RA L +A ++
Sbjct: 449 NGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMEL 508
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P NV++W +L+ AC HG +E+GE ++LE+E + G V++ NI A R
Sbjct: 509 IETMPFP-PNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKR 567
Query: 307 YGDAERLRRVVDERNALK 324
+ D +R+++ + K
Sbjct: 568 WDDVGLVRKLMKHKGVSK 585
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 136/284 (47%), Gaps = 36/284 (12%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
+ +I G + AR LF++M R+VV+W +IDGY++ + L L+ M T
Sbjct: 155 SALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEM-KTSGT 213
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
EP I + V A G++ + IH + + GF H+ L++ YA CG + A
Sbjct: 214 EPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGS-HIQTSLVNMYANCGAMHLAR 272
Query: 141 KLFEDISVER-----------------------------KNLVSWTSIISGFAMHGMGKE 171
++++ + + K+LV W+++ISG+A E
Sbjct: 273 EVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLE 332
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSH-GGLVEEGLKFFDKMVEECEVLPDIKHYGCL 230
A++ F MQ+ + P+++T LSV++AC++ G LV+ K+ ++ + L
Sbjct: 333 ALQLFNEMQRRRIVPDQITMLSVISACANVGALVQA--KWIHTYADKNGFGRTLPINNAL 390
Query: 231 IDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
IDM + G L +A +V +P + NV+ W +++ A + HG+ +
Sbjct: 391 IDMYAKCGNLVKAREVFENMPRK--NVISWSSMINAFAMHGDAD 432
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 126/291 (43%), Gaps = 10/291 (3%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
L+YA SLF +P ++ ++R L+L+ + + + +
Sbjct: 65 LDYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPL-DRFSFPPLLK 123
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
A+ + + IHG K GF + + LI YA CG I A LF+ +S ++
Sbjct: 124 AVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMS--HRD 181
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
+V+W +I G++ + ++ +E M+ +P+ + +VL+AC+H G + G K
Sbjct: 182 VVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYG-KAIH 240
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
+ +++ L++M G + A +V +PS+ ++VV +L + G
Sbjct: 241 QFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSK--HMVVSTAMLSGYAKLGM 298
Query: 273 VE----MGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319
V+ + +R+ K L Y Y L + + + +R R V D+
Sbjct: 299 VQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQ 349
>gi|356576967|ref|XP_003556601.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g35030, mitochondrial-like [Glycine max]
Length = 453
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 121/330 (36%), Positives = 197/330 (59%), Gaps = 3/330 (0%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + +LF +PER++ +WN MITG ++ G+L YA LF EM +N ++WT ++ GY +
Sbjct: 93 LHEALELFQGMPERDMHSWNTMITGFIQNGKLNYAEKLFGEMREKNAITWTAMMMGYVQH 152
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
S AL +F +M+A + +P+ T + V A + Q IH K F I
Sbjct: 153 GLSEEALKVFNKMLANDGLKPNTGTFVTVLRACSDLAGLTEGQQIHQMISKTVFQDSXI- 211
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
LI+ Y KCG + +A +F+D + +++L+SW +I+G+A HG GKEA+ F MQ+
Sbjct: 212 -CGTLINMYPKCGELHTAKXMFDDGLLSQRDLISWNGMIAGYAHHGYGKEAINLFNEMQE 270
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ + N VTF+ +L ACSH G+VEEGLK+FD++++ + HY CL+D+ R GRL+
Sbjct: 271 LGVCANDVTFVGLLRACSHTGVVEEGLKYFDEILKNRSIXLREDHYACLVDLCDRTGRLK 330
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + G+ E + + VW LL C+ HGNV++G+ V +KIL++E G + L+ N+
Sbjct: 331 EAFNIIEGLGKE-SPLTVWGVLLARCNVHGNVDIGKLVAKKILKIEPQNAGTHSLLSNMY 389
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A V ++ +A +R ++++ K PG S +
Sbjct: 390 ASVGKWKEAANIRMKMNDKGLKKQPGYSWI 419
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 18/157 (11%)
Query: 135 CIFSALK------LFE-DISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
C+ S LK LF+ ++ + +++VSWT++++G +G ++A F+RM N
Sbjct: 21 CVPSILKKIIKLPLFDFSLTDQVEDVVSWTTMVAGLLKNGRVEDARALFDRMP----VRN 76
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
V++ +++ + + E L+ F M E D+ + +I + G+L AEK+
Sbjct: 77 VVSWNAMIMGHAQNRRLHEALELFQGMPER-----DMHSWNTMITGFIQNGKLNYAEKLF 131
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKIL 284
+ + N + W ++ HG E +V K+L
Sbjct: 132 GEMREK--NAITWTAMMMGYVQHGLSEEALKVFNKML 166
>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 552
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/318 (37%), Positives = 191/318 (60%), Gaps = 5/318 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++F ++ E+N+V+WN MI G K G L A+ LF EMP R+V+SWT +I GY+ +
Sbjct: 229 RVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAE 288
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ LF+ M+ +P EIT+ A G + + +H Y K + + V N L
Sbjct: 289 AVKLFQEMMV-SMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKS-DVFVGNSL 346
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y KCG + AL++F D+ + ++ VSWTSIISG A++G + A+ F++M K + P
Sbjct: 347 IDMYCKCGVVEKALQVFNDM--KTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICP 404
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
TF+ VL AC+H GLV++G++ F M + P++KHYGC++D+L R+G L+ A
Sbjct: 405 THGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNF 464
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P + +VV+WR LL AC HGN+ + E V++K+L ++ G+YVL + AG R
Sbjct: 465 IKKMPI-VPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLDPSNNGNYVLSSSTYAGSDR 523
Query: 307 YGDAERLRRVVDERNALK 324
+ D ++R++++ N K
Sbjct: 524 WDDVIKIRKLMEVTNLQK 541
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 144/295 (48%), Gaps = 36/295 (12%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I V +GEL A+ +F+ M R+VVSW II GY + NR L LFR M A
Sbjct: 111 NALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVR 170
Query: 81 EPSEITILAV----FPAIWQNGD---------------VRNCQLIHGYGEKRGFNAF--- 118
S + A+ F + W+ GD LI YG +RG F
Sbjct: 171 ADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYG-RRGMIDFAGR 229
Query: 119 --------HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 170
+I N +I YAK G + +A KLF ++ ++++SWTS+I G+++
Sbjct: 230 VFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEM--PSRDVISWTSMIIGYSLAKQHA 287
Query: 171 EAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCL 230
EAV+ F+ M ++KP+ +T + L+AC+H G ++ G D + + ++ D+ L
Sbjct: 288 EAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHD-YIRKHDIKSDVFVGNSL 346
Query: 231 IDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
IDM + G +E+A +V + + + + V W +++ + +G E V ++L+
Sbjct: 347 IDMYCKCGVVEKALQVFNDMKTR--DSVSWTSIISGLAVNGFAESALNVFDQMLK 399
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 124/248 (50%), Gaps = 7/248 (2%)
Query: 32 ELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVF 91
L A +F ++ ++ W +I G ++ +R N A+ + M + + S +T + +F
Sbjct: 21 SLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYY-KGIQGSHLTFIFLF 79
Query: 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151
+ + DVR Q++ + K GF + VSN LI Y G + A K+F+ + +ER
Sbjct: 80 KSCARVSDVRQGQMVRVHSMKLGFESXSF-VSNALIHMYVCFGELAMAQKVFDGM-LER- 136
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
++VSW SII G+ K+ ++ F MQ + ++ + VT + ++A E G +
Sbjct: 137 DVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMG-DYL 195
Query: 212 DKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
K ++E V+ D+ LIDM GR G ++ A +V + + N+V W ++ + G
Sbjct: 196 VKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEK--NIVSWNAMIMGYAKVG 253
Query: 272 NVEMGERV 279
N+ +++
Sbjct: 254 NLVAAKKL 261
>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
Length = 635
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 118/324 (36%), Positives = 190/324 (58%), Gaps = 4/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFDE+P+ ++V M+T K G L+ AR LF+ MP ++ + W +IDGYT+ R N A
Sbjct: 187 LFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEA 246
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LFR M+ +P E+ I+ A+ Q G + + +H Y + + V LI
Sbjct: 247 LRLFRWMLRSG-VDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALI 305
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y KCG + A+ +F S+ K++V W ++I+G+AMHG ++A+E F +++ L P
Sbjct: 306 DMYCKCGSLEDAVSVFN--SIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPT 363
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TF+ +LNACSH GLV+EG +FF M EE ++P I+HYGC++D+LGRAG +E+A +
Sbjct: 364 DITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLV 423
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+ + + V+W +LL AC H N+ +G+++ ++ G Y+L+ NI A V +
Sbjct: 424 QSM-TIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNW 482
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
+ R+R ++ K PG S +
Sbjct: 483 EEVARVRSMMKASGIQKEPGCSAI 506
>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
Length = 634
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 118/324 (36%), Positives = 190/324 (58%), Gaps = 4/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFDE+P+ ++V M+T K G L+ AR LF+ MP ++ + W +IDGYT+ R N A
Sbjct: 186 LFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEA 245
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LFR M+ +P E+ I+ A+ Q G + + +H Y + + V LI
Sbjct: 246 LRLFRWMLRSG-VDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALI 304
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y KCG + A+ +F S+ K++V W ++I+G+AMHG ++A+E F +++ L P
Sbjct: 305 DMYCKCGSLEDAVSVFN--SIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPT 362
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TF+ +LNACSH GLV+EG +FF M EE ++P I+HYGC++D+LGRAG +E+A +
Sbjct: 363 DITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLV 422
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+ + + V+W +LL AC H N+ +G+++ ++ G Y+L+ NI A V +
Sbjct: 423 QSM-TIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYAAVGNW 481
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
+ R+R ++ K PG S +
Sbjct: 482 EEVARVRSMMKASGIQKEPGCSAI 505
>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Brachypodium distachyon]
Length = 555
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 197/332 (59%), Gaps = 8/332 (2%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L K+FDE+P RNLV+WN M+ G GE+ AR LF+ MP ++VVSWT +I GY +
Sbjct: 225 LLPLARKMFDEMPVRNLVSWNTMVRGYAVNGEMNDARELFDRMPEKDVVSWTCMISGYAQ 284
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF---NA 117
L LFR M + P+E+T+++V A + + H + +K +
Sbjct: 285 ARCYTETLELFRAMQSESNVLPNEVTMVSVLSACAHLTALEEGRWAHAFIDKHKMVLDSE 344
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
F++ + LID Y+KCG A+K+F S+++KN+ +W ++I+G A++G + +++ FE
Sbjct: 345 FNLGAA--LIDMYSKCGRTDLAVKIFH--SLDQKNVSAWNALITGLAVNGDVRSSIDVFE 400
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
+M++ KPN +TF+ VL AC+HGGLV+EG + F M C V P+ KHYGC++DMLGRA
Sbjct: 401 QMRRSGEKPNGITFVGVLTACAHGGLVDEGRRCFQSMASTCGVQPEAKHYGCMVDMLGRA 460
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297
G LE+AE++ +P + +V++ LLGAC H V++ RV +IL + G +VL+
Sbjct: 461 GLLEEAEELIRSMPM-VPDVMILGALLGACRMHKRVDVAARVQNEILGLSTQQSGCHVLI 519
Query: 298 YNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
+I A ++ DA R V+ + K G S
Sbjct: 520 SDIYAAAGKWADALYARGVLQKFGISKLRGSS 551
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 134/274 (48%), Gaps = 42/274 (15%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
+LVTWN M+ G VK GE+ AR +FE+MP RN VSW+ ++ Y + A +F M
Sbjct: 145 DLVTWNTMLGGYVKCGEIGEARRVFEQMPQRNGVSWSAMVGAYAGAGELDVAREMFDEM- 203
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGE-------KRGFNAFHIH--VS-NC 125
PAI +N N +I G+ ++ F+ + VS N
Sbjct: 204 ----------------PAIGRNVVSWN-SMITGFARHGLLPLARKMFDEMPVRNLVSWNT 246
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ-KVVL 184
++ YA G + A +LF+ + K++VSWT +ISG+A E +E F MQ + +
Sbjct: 247 MVRGYAVNGEMNDARELFDRM--PEKDVVSWTCMISGYAQARCYTETLELFRAMQSESNV 304
Query: 185 KPNRVTFLSVLNACSHGGLVEEGL---KFFD--KMVEECEVLPDIKHYGCLIDMLGRAGR 239
PN VT +SVL+AC+H +EEG F D KMV + E LIDM + GR
Sbjct: 305 LPNEVTMVSVLSACAHLTALEEGRWAHAFIDKHKMVLDSE----FNLGAALIDMYSKCGR 360
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
+ A K+ + + NV W L+ + +G+V
Sbjct: 361 TDLAVKIFHSLDQK--NVSAWNALITGLAVNGDV 392
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 98/233 (42%), Gaps = 35/233 (15%)
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDV--------------------RNCQLIHGYGEKR 113
++ T PS A F +I ++GD R +H +R
Sbjct: 49 LIRASATSPSPRLAFAAFSSILRSGDTPDRFTFPSLLKSASRLASFPRTGAQVHAQAVRR 108
Query: 114 GFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAV 173
G + V N L+ YA S ++F D +LV+W +++ G+ G EA
Sbjct: 109 GL-LVDVFVVNTLLAMYAAFRDTRSMREVF-DSCAGVADLVTWNTMLGGYVKCGEIGEAR 166
Query: 174 ENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDM 233
FE+M + N V++ +++ A + G ++ + FD+M + ++ + +I
Sbjct: 167 RVFEQMP----QRNGVSWSAMVGAYAGAGELDVAREMFDEMP---AIGRNVVSWNSMITG 219
Query: 234 LGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNV----EMGERVTRK 282
R G L A K+ +P + N+V W T++ + +G + E+ +R+ K
Sbjct: 220 FARHGLLPLARKMFDEMP--VRNLVSWNTMVRGYAVNGEMNDARELFDRMPEK 270
>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 123/337 (36%), Positives = 185/337 (54%), Gaps = 15/337 (4%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FDE+ ERN+V+W MI G + +L AR LF+EMP +N VSW II GY +
Sbjct: 227 KVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRS 286
Query: 67 ALALFRRM------------VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG 114
A +F M + +P E ++++ A Q G + + + Y K
Sbjct: 287 ARKMFDEMPHRNRDVVAWSALISGNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSS 346
Query: 115 FNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVE 174
+ HV LID AKCG + A KLFE++ +++L+S+ S++ G ++HG G +AV
Sbjct: 347 IDVHRAHVIAALIDMNAKCGSMDRATKLFEEM--PKRDLISYCSMMQGLSIHGCGPQAVS 404
Query: 175 NFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDML 234
F RM L P+ V F +L ACS GLV+EG +F+ M + ++P HY C++D+L
Sbjct: 405 LFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLL 464
Query: 235 GRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY 294
GRAGRL++A ++ +P E + W LLGAC H ++E+GE V ++ E+E G+Y
Sbjct: 465 GRAGRLKEAYELLKSMPVE-PHAGAWGALLGACKLHCDIELGEVVADQLFELEPQNAGNY 523
Query: 295 VLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
VL+ NI A ++ D LR + ER K PG S +
Sbjct: 524 VLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCSWI 560
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 129/319 (40%), Gaps = 50/319 (15%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
Y S+F + + V W I GY+ + ++LF RM + P + T ++
Sbjct: 121 FSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAV-PDKFTYPSLIK 179
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI------ 146
A + V+ HG + G + V LID Y KCG I A K+F+++
Sbjct: 180 ACSKVCGVKEGVAFHGSAVRCGVGG-DVFVMTSLIDLYGKCGEILCARKVFDEMGERNVV 238
Query: 147 -----------------------SVERKNLVSWTSIISGFAMHGMGKEAVENFERM---- 179
+ KN VSW +IISG+ G + A + F+ M
Sbjct: 239 SWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRN 298
Query: 180 QKVV---------LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY-GC 229
+ VV +KP+ +S+++ACS G +E K+ D V + + H
Sbjct: 299 RDVVAWSALISGNVKPDEFIMVSLMSACSQMGSLELA-KWVDDYVRKSSIDVHRAHVIAA 357
Query: 230 LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 289
LIDM + G +++A K+ +P +++ + +++ S HG + ++L G
Sbjct: 358 LIDMNAKCGSMDRATKLFEEMPKR--DLISYCSMMQGLSIHGCGPQAVSLFSRML--NEG 413
Query: 290 YGGDYVLMYNILAGVWRYG 308
D V IL R G
Sbjct: 414 LTPDDVAFTVILTACSRAG 432
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 80/174 (45%), Gaps = 13/174 (7%)
Query: 148 VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEG 207
V + V W + I G++ + V F RM++ P++ T+ S++ ACS V+EG
Sbjct: 131 VSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEG 190
Query: 208 LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL-GA 266
+ F V C V D+ LID+ G+ G + A KV + NVV W ++ G
Sbjct: 191 VAFHGSAV-RCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGER--NVVSWTAMIAGY 247
Query: 267 CSFHGNVEMGERVTRKIL-EMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319
SF VE RK+ EM + V I++G + GD R++ DE
Sbjct: 248 ASFSDLVE-----ARKLFDEMPE---KNAVSWNAIISGYVKCGDLRSARKMFDE 293
>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
Length = 545
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/324 (40%), Positives = 198/324 (61%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FD + ++ VTW M+ G +K ++ A S F +MP ++ VSWT +I G+ + + A
Sbjct: 176 VFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQA 235
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LF +M+ E P+ ITI+ V A G + + IHGYG K +I V+N L+
Sbjct: 236 LELFGKML-LEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATT-NIIVTNALM 293
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D YAK G I SA +FE+ V+ K+ +WT++IS F + G G++AVE F M + + PN
Sbjct: 294 DMYAKSGSIASAFSVFEE--VQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPN 351
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
VTF+SVL+ACSH GL++EG + FDKM E + P ++HYGC++D+LGR G LE+AE +
Sbjct: 352 SVTFVSVLSACSHAGLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALI 411
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+ E ++V+WR+LL AC HGN + E ++I++ E G G YVL++N+ A R+
Sbjct: 412 DHMDVE-PDIVIWRSLLSACLAHGNDRLAEIAGKEIIKREPGDDGVYVLLWNMYALSNRW 470
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
+A +R+ + R K PG S +
Sbjct: 471 KEALDMRKQMLSRKIYKKPGCSWI 494
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 139/322 (43%), Gaps = 38/322 (11%)
Query: 28 VKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITI 87
++G A LF+E+P +++S+T ++ + +++ A+++F +A + P
Sbjct: 64 AEFGRPADAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGH-RPDGFAA 122
Query: 88 LAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS 147
+ A GD R ++HG + G ++ + V N L+D Y +CG A +F+ +
Sbjct: 123 VGALSASGGLGDQRIGSVVHGLIFRCGLDS-ELVVCNALVDMYCRCGKFEPARTVFDRML 181
Query: 148 VER-----------------------------KNLVSWTSIISGFAMHGMGKEAVENFER 178
V+ K+ VSWT++I+G +A+E F +
Sbjct: 182 VKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGK 241
Query: 179 MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
M +PN +T + VL+AC+ G ++ G + + +I L+DM ++G
Sbjct: 242 MLLEGHRPNHITIVGVLSACADIGALDLG-RAIHGYGSKSNATTNIIVTNALMDMYAKSG 300
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER-GYGGDYVLM 297
+ A V + ++ + W T++ + + GN G + +M R G + V
Sbjct: 301 SIASAFSVFEEV--QMKDAFTWTTMISSFTVQGN---GRKAVELFWDMLRSGILPNSVTF 355
Query: 298 YNILAGVWRYGDAERLRRVVDE 319
++L+ G + R + D+
Sbjct: 356 VSVLSACSHAGLIQEGRELFDK 377
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 120/325 (36%), Positives = 194/325 (59%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++F + R++++W ++ G V+ G L+ AR+ F++MP R+ +SWT +IDGY R N
Sbjct: 292 RIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNE 351
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
+L +FR M + P E T+++V A G + + I Y +K + V N L
Sbjct: 352 SLEIFREMQSAGMI-PDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKN-DVVVGNAL 409
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y KCGC A K+F D+ ++++ +WT+++ G A +G G+EA++ F +MQ + ++P
Sbjct: 410 IDMYFKCGCSEKAQKVFHDM--DQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQP 467
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +T+L VL+AC+H G+V++ KFF KM + + P + HYGC++DMLGRAG +++A ++
Sbjct: 468 DDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEI 527
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P N +VW LLGA H + M E +KILE+E G Y L+ NI AG R
Sbjct: 528 LRKMPMN-PNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKR 586
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ D +RR + + K PG SL+
Sbjct: 587 WKDLREVRRKIVDVAIKKTPGFSLI 611
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 118/260 (45%), Gaps = 32/260 (12%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL N ++ G ++ AR +F+ +V SW +I GY RM ++ L M
Sbjct: 169 NLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEME 228
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
P+ +T+L V A + D C+ +H Y + + + N L++ YA CG
Sbjct: 229 R-NLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEP-SLRLENALVNAYAACGE 286
Query: 136 IFSALKLFEDIS--------------VERKNL---------------VSWTSIISGFAMH 166
+ A+++F + VER NL +SWT +I G+
Sbjct: 287 MDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRA 346
Query: 167 GMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH 226
G E++E F MQ + P+ T +SVL AC+H G +E G ++ +++ ++ D+
Sbjct: 347 GCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIG-EWIKTYIDKNKIKNDVVV 405
Query: 227 YGCLIDMLGRAGRLEQAEKV 246
LIDM + G E+A+KV
Sbjct: 406 GNALIDMYFKCGCSEKAQKV 425
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 125/248 (50%), Gaps = 10/248 (4%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G + YA LF ++P +VV W +I G+++++ + L+ M+ E P T +
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLK-EGVTPDSHTFPFL 140
Query: 91 FPAIWQNGDVRNC-QLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE 149
+ ++G C + +H + K G + +++V N L+ Y+ CG + A +F+
Sbjct: 141 LNGLKRDGGALACGKKLHCHVVKFGLGS-NLYVQNALVKMYSLCGLMDMARGVFDRRC-- 197
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL- 208
++++ SW +ISG+ +E++E M++ ++ P VT L VL+ACS + ++ L
Sbjct: 198 KEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSK--VKDKDLC 255
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
K + V EC+ P ++ L++ G ++ A ++ + + +V+ W +++
Sbjct: 256 KRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKAR--DVISWTSIVKGYV 313
Query: 269 FHGNVEMG 276
GN+++
Sbjct: 314 ERGNLKLA 321
>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Cucumis sativus]
Length = 649
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/330 (36%), Positives = 196/330 (59%), Gaps = 2/330 (0%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + KLF+++PER L +WN MITG ++ G+LE A F +M +NVV+WT +I G+ +
Sbjct: 269 LDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQD 328
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
RS AL +F M A +P+E T ++V A + + Q IH K +
Sbjct: 329 GRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEV-AD 387
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V + LI+ Y+KCG + A K+F+D S+ +++VSW +I+ +A HG G +A+ F+ MQ
Sbjct: 388 VVSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQA 447
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ +P+ VT++++L+ACSH GLV+EGLK F+ +V + + H+ CL+D+ GRAGRL+
Sbjct: 448 LGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAGRLQ 507
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A G+ + + VW LL C+ HG++++G+ K+LE E G Y+++ NI
Sbjct: 508 EAFDFIKGLEVK-PSASVWAALLAGCNVHGHIDLGKLTAEKLLETEPENAGTYLVLSNIY 566
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ +A +R + ++ K PG S +
Sbjct: 567 ASTGKWREAAGVRMKMKDKGLKKQPGCSWI 596
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 156/331 (47%), Gaps = 41/331 (12%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+++ +LFD +P +N+++WN MI G + G ++ A LFE+MP RNVVSW +I + +
Sbjct: 145 IEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEKMPERNVVSWNTVITAFMQR 204
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQL---------------- 105
R + A LF RM E I+ + + +NG + + +L
Sbjct: 205 RRVDEAQELFNRM-----PERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTM 259
Query: 106 IHGYGEK----RGFNAF------HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 155
I GY + F F + N +I + + G + A+ F +S KN+V+
Sbjct: 260 IIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMS--NKNVVT 317
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKV-VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKM 214
WT++ISG G +EA++ F MQ +KPN TF+SVL ACS + EG + +
Sbjct: 318 WTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQII 377
Query: 215 VEEC-EVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
+ + + D+ LI+M + G LE A K+ +VV W ++ A + HG+
Sbjct: 378 SKTVYQEVADV--VSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGH- 434
Query: 274 EMGERVTRKILEMER-GYGGDYVLMYNILAG 303
G + EM+ G+ D V +L+
Sbjct: 435 --GHKAISLFDEMQALGFRPDNVTYIALLSA 463
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 133/277 (48%), Gaps = 32/277 (11%)
Query: 3 KDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
K S + D N+ N +IT L K G++ AR +FEEMP R+VVSWT +I GY +
Sbjct: 52 KISSPVRDFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCG 111
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH- 121
A LF R A + +T A+ +G VR ++ +R F+A +
Sbjct: 112 MIEEAKTLFDRNDAIKNV----VTWTALV-----SGYVRWNRIEEA---RRLFDAMPVKN 159
Query: 122 -VS-NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+S N +I+ YA+ G I AL LFE + +N+VSW ++I+ F EA E F RM
Sbjct: 160 VISWNTMIEGYARKGWIDQALDLFEKMP--ERNVVSWNTVITAFMQRRRVDEAQELFNRM 217
Query: 180 QKVVLKPNR--VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
P R +++ +++ S G +++ FDKM + ++ + +I +
Sbjct: 218 ------PERDVISWTTMVAGLSKNGRIDDARLLFDKM-----PVRNVVSWNTMIIGYAQN 266
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
RL++A K+ +P + W T++ +G +E
Sbjct: 267 MRLDEAFKLFEQMPER--ELSSWNTMITGFIQNGKLE 301
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 120/325 (36%), Positives = 194/325 (59%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++F + R++++W ++ G V+ G L+ AR+ F++MP R+ +SWT +IDGY R N
Sbjct: 292 RIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNE 351
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
+L +FR M + P E T+++V A G + + I Y +K + V N L
Sbjct: 352 SLEIFREMQSAGMI-PDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKN-DVVVGNAL 409
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y KCGC A K+F D+ ++++ +WT+++ G A +G G+EA++ F +MQ + ++P
Sbjct: 410 IDMYFKCGCSEKAQKVFHDM--DQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQP 467
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +T+L VL+AC+H G+V++ KFF KM + + P + HYGC++DMLGRAG +++A ++
Sbjct: 468 DDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEI 527
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P N +VW LLGA H + M E +KILE+E G Y L+ NI AG R
Sbjct: 528 LRKMPMN-PNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKR 586
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ D +RR + + K PG SL+
Sbjct: 587 WKDLREVRRKIVDVAIKKTPGFSLI 611
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 118/260 (45%), Gaps = 32/260 (12%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL N ++ G ++ AR +F+ +V SW +I GY RM ++ L M
Sbjct: 169 NLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEME 228
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
P+ +T+L V A + D C+ +H Y + + + N L++ YA CG
Sbjct: 229 R-NLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEP-SLRLENALVNAYAACGE 286
Query: 136 IFSALKLFEDIS--------------VERKNL---------------VSWTSIISGFAMH 166
+ A+++F + VER NL +SWT +I G+
Sbjct: 287 MDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRA 346
Query: 167 GMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH 226
G E++E F MQ + P+ T +SVL AC+H G +E G ++ +++ ++ D+
Sbjct: 347 GCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIG-EWIKTYIDKNKIKNDVVV 405
Query: 227 YGCLIDMLGRAGRLEQAEKV 246
LIDM + G E+A+KV
Sbjct: 406 GNALIDMYFKCGCSEKAQKV 425
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 125/248 (50%), Gaps = 10/248 (4%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G + YA LF ++P +VV W +I G+++++ + L+ M+ E P T +
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLK-EGVTPDSHTFPFL 140
Query: 91 FPAIWQNGDVRNC-QLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE 149
+ ++G C + +H + K G + +++V N L+ Y+ CG + A +F+
Sbjct: 141 LNGLKRDGGALACGKKLHCHVVKFGLGS-NLYVQNALVKMYSLCGLMDMARGVFDRRC-- 197
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL- 208
++++ SW +ISG+ +E++E M++ ++ P VT L VL+ACS + ++ L
Sbjct: 198 KEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSK--VKDKDLC 255
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
K + V EC+ P ++ L++ G ++ A ++ + + +V+ W +++
Sbjct: 256 KRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKAR--DVISWTSIVKGYV 313
Query: 269 FHGNVEMG 276
GN+++
Sbjct: 314 ERGNLKLA 321
>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g35030, mitochondrial-like [Cucumis sativus]
Length = 649
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/330 (36%), Positives = 196/330 (59%), Gaps = 2/330 (0%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + KLF+++PER L +WN MITG ++ G+LE A F +M +NVV+WT +I G+ +
Sbjct: 269 LDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQD 328
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
RS AL +F M A +P+E T ++V A + + Q IH K +
Sbjct: 329 GRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEV-AD 387
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V + LI+ Y+KCG + A K+F+D S+ +++VSW +I+ +A HG G +A+ F+ MQ
Sbjct: 388 VVSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQA 447
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ +P+ VT++++L+ACSH GLV+EGLK F+ +V + + H+ CL+D+ GRAGRL+
Sbjct: 448 LGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAGRLQ 507
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A G+ + + VW LL C+ HG++++G+ K+LE E G Y+++ NI
Sbjct: 508 EAFDFIKGLEVK-PSASVWAALLAGCNVHGHIDLGKLTAEKLLETEPENAGTYLVLSNIY 566
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ +A +R + ++ K PG S +
Sbjct: 567 ASTGKWREAAGVRMKMKDKGLKKQPGCSWI 596
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 155/331 (46%), Gaps = 41/331 (12%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+++ +LFD +P +N+++WN MI G + G ++ A LFE MP RNVVSW +I + +
Sbjct: 145 IEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEXMPERNVVSWNTVITAFMQR 204
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQL---------------- 105
R + A LF RM E I+ + + +NG + + +L
Sbjct: 205 RRVDEAQELFNRM-----PERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTM 259
Query: 106 IHGYGEK----RGFNAF------HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 155
I GY + F F + N +I + + G + A+ F +S KN+V+
Sbjct: 260 IIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMS--NKNVVT 317
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKV-VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKM 214
WT++ISG G +EA++ F MQ +KPN TF+SVL ACS + EG + +
Sbjct: 318 WTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQII 377
Query: 215 VEEC-EVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
+ + + D+ LI+M + G LE A K+ +VV W ++ A + HG+
Sbjct: 378 SKTVYQEVADV--VSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGH- 434
Query: 274 EMGERVTRKILEMER-GYGGDYVLMYNILAG 303
G + EM+ G+ D V +L+
Sbjct: 435 --GHKAISLFDEMQALGFRPDNVTYIALLSA 463
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 133/277 (48%), Gaps = 32/277 (11%)
Query: 3 KDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
K S + D N+ N +IT L K G++ AR +FEEMP R+VVSWT +I GY +
Sbjct: 52 KISSPVRDFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCG 111
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH- 121
A LF R A + +T A+ +G VR ++ +R F+A +
Sbjct: 112 MIEEAKTLFDRNDAIKNV----VTWTALV-----SGYVRWNRIEEA---RRLFDAMPVKN 159
Query: 122 -VS-NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+S N +I+ YA+ G I AL LFE + +N+VSW ++I+ F EA E F RM
Sbjct: 160 VISWNTMIEGYARKGWIDQALDLFE--XMPERNVVSWNTVITAFMQRRRVDEAQELFNRM 217
Query: 180 QKVVLKPNR--VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
P R +++ +++ S G +++ FDKM + ++ + +I +
Sbjct: 218 ------PERDVISWTTMVAGLSKNGRIDDARLLFDKM-----PVRNVVSWNTMIIGYAQN 266
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
RL++A K+ +P + W T++ +G +E
Sbjct: 267 MRLDEAFKLFEQMPER--ELSSWNTMITGFIQNGKLE 301
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/330 (37%), Positives = 192/330 (58%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ G LFD + ++ +V+W MI G K G L+ A LF +MP +NVV+W +I +
Sbjct: 306 LEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQA 365
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
N S AL LFR M +P ++T+L A Q G + H Y +K + +
Sbjct: 366 NLSFEALELFREM-QWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKKHNL-SLDVA 423
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LID YAKCG + AL++F ++ R+N ++WT+II G A++G +A+ F +M
Sbjct: 424 LGTALIDMYAKCGNMTKALQVFNEMP--RRNSLTWTAIIGGLALYGNVNDAIFYFSKMID 481
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
L P+ +TFL VL AC HGGLVEEG K+FD+M + P KHY C++++LGRAG LE
Sbjct: 482 SGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNLLGRAGLLE 541
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AE++ +P E + +VW L AC H N+ +GER K+L+++ G YVL+ N+
Sbjct: 542 EAEELIKTMPME-ADAMVWGALFFACGIHRNLLIGERAASKLLDLDPHDSGIYVLLANMY 600
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
++ +A+ +R+++ ER K PG S +
Sbjct: 601 REAGKWEEAQNIRKMMMERGVEKTPGSSSI 630
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 167/337 (49%), Gaps = 40/337 (11%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
++++ +N +I LV GE A +F+E R++VSW +I+GY R + A+ ++++
Sbjct: 186 DKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQ 245
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M+ E+ +P E+T++ V A Q ++ + IH Y E+ G N I + N L+D Y KC
Sbjct: 246 MIT-EHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLN-LKISLVNALMDMYVKC 303
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM----GK------------------- 170
G + + LF+++ +K +VSWT++I G+A +G+ GK
Sbjct: 304 GDLEAGKVLFDNM--RKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGS 361
Query: 171 --------EAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP 222
EA+E F MQ +KP++VT L L+ACS G ++ G+ + +++ +
Sbjct: 362 CVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGM-WTHNYIKKHNLSL 420
Query: 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRK 282
D+ LIDM + G + +A +V + +P N + W ++G + +GNV K
Sbjct: 421 DVALGTALIDMYAKCGNMTKALQVFNEMPRR--NSLTWTAIIGGLALYGNVNDAIFYFSK 478
Query: 283 ILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319
++ + G D + +L G E R+ D+
Sbjct: 479 MI--DSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQ 513
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 114/253 (45%), Gaps = 6/253 (2%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
L+Y + + NV SW +I G L L++RM+ P T +F
Sbjct: 103 LDYCIKILNNLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFK 162
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
I G K GF+ +++ N +I G A K+F++ V ++
Sbjct: 163 VCANLVLSYMGFEILGQVLKMGFDK-DMYLYNGIIHMLVSVGESGLAHKVFDEGCV--RD 219
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
LVSW S+I+G+ +EA+ +++M +KP+ VT + V++AC+ ++ G +
Sbjct: 220 LVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLG-REIH 278
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
+ +EE + I L+DM + G LE + + + + VV W T++ + +G
Sbjct: 279 RYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKK--TVVSWTTMIVGYAKNGL 336
Query: 273 VEMGERVTRKILE 285
++M ++ + E
Sbjct: 337 LDMAGKLFHDMPE 349
>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 129/334 (38%), Positives = 194/334 (58%), Gaps = 13/334 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L K+F L +N V+WN M+ G ++ GE+E A LF+EMP R+ +SWT +I+G +
Sbjct: 146 LGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKH 205
Query: 62 NRSNGALALFRRM----VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
S AL F +M VA +Y ++I+AV A G + +H + + F
Sbjct: 206 GYSEQALECFHQMQRSGVAADY-----VSIIAVLAACADLGALTLGLWVHRFVMPQEFKD 260
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
+I +SN LID Y++CGCI A ++F + + ++ LVSW SII GFA++G E++E F
Sbjct: 261 -NIKISNSLIDMYSRCGCIEFARQVF--VKMAKRTLVSWNSIIVGFAVNGFADESLEFFX 317
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
MQK KP+ V++ L ACSH GLV +GL+ FD M ++ P I+HYGC++D+ GRA
Sbjct: 318 AMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRA 377
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297
GRLE A + +P + N VV +LL AC HG+V + ER+ + + +++ YVL+
Sbjct: 378 GRLEDALNMIEEMPMK-PNEVVLGSLLAACRTHGDVNLAERLMKHLFKLDPEGDAYYVLL 436
Query: 298 YNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
NI A + ++ A +RR + R K PG S V
Sbjct: 437 SNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSV 470
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 108/240 (45%), Gaps = 33/240 (13%)
Query: 38 SLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAI--W 95
S F +V WT + Y R + + A A F RM EP+ IT + + A +
Sbjct: 47 SKFNPNSVDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAG-VEPNHITFITLLSACADF 105
Query: 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER----- 150
+ +HGY K G + H+ V LID Y+KC + A K+F ++ V+
Sbjct: 106 PSESFFFASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWN 165
Query: 151 ------------------------KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
++ +SWT++I+G HG ++A+E F +MQ+ +
Sbjct: 166 TMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAA 225
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ V+ ++VL AC+ G + GL + + V E +IK LIDM R G +E A +V
Sbjct: 226 DYVSIIAVLAACADLGALTLGL-WVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQV 284
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
+V WTS ++ + +G EA F RM+ ++PN +TF+++L+AC+ E F
Sbjct: 57 IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACA--DFPSESFFFAS 114
Query: 213 KMV-EECEVLPDIKHY---GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
+ C+ D H LIDM + +L A KV + + N V W T+L
Sbjct: 115 SLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNL--GVKNSVSWNTMLNGFM 172
Query: 269 FHGNVEMG 276
+G +E+
Sbjct: 173 RNGEIELA 180
>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 121/301 (40%), Positives = 189/301 (62%), Gaps = 5/301 (1%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G +E+AR +F+EM + VSW+ +I GY R+ RS+ A+ LFR M + P EIT+++V
Sbjct: 63 GGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREM-QIKGVCPDEITMVSV 121
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A G + + + Y EK ++ +SN LID +AKCG + A LF S+
Sbjct: 122 LSACTGLGALELGKWVESYVEKERVQK-NVELSNALIDMFAKCGDVDKATNLFR--SMRE 178
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
+N+VSWTS+I G AMHG G EAV FE M + + P+ V F+ +L+ACSH GLV++G ++
Sbjct: 179 RNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRY 238
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
FD M ++ ++P I+HYGC++DML RAG +++A K +P + N VVWRTL+ AC H
Sbjct: 239 FDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPID-PNPVVWRTLINACRAH 297
Query: 271 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSL 330
G +++GE++TR+++ E + +YVL+ NI A + + R+R +D + K PG ++
Sbjct: 298 GELKLGEKITRQLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTM 357
Query: 331 V 331
+
Sbjct: 358 I 358
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 2/157 (1%)
Query: 11 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALAL 70
E ++N+ N +I K G+++ A +LF M RN+VSWT +I G R A+A+
Sbjct: 144 ERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAV 203
Query: 71 FRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTY 130
F MV T P ++ + + A +G V + K I C++D
Sbjct: 204 FEEMVRSGVT-PDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDML 262
Query: 131 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 167
+ G + ALK +++ ++ N V W ++I+ HG
Sbjct: 263 CRAGLVKEALKFVQEMPID-PNPVVWRTLINACRAHG 298
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 189/331 (57%), Gaps = 6/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ +LFDE+P RN +WN MI G + +E A LF +MP R+++SWT +I Y++
Sbjct: 92 MSSARQLFDEMPVRNTASWNAMIDGYSRLRNVESAELLFSQMPNRDIISWTTMIACYSQN 151
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ ALA+F M +P E+T+ + A G + + IH Y + GF+ ++
Sbjct: 152 KQFREALAVFNEM-QTNGIDPDEVTMATIISACAHLGALDLGKEIHLYAMEMGFD-LDVY 209
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ + LID YAKCG + +L +F + +KNL W SII G A+HG +EA+ F RMQ+
Sbjct: 210 IGSALIDMYAKCGSLDKSLVVF--FKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQR 267
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPN VTF+SVL AC+H GLVEEG K F M + + P+I+HYGC++D+LG+AG LE
Sbjct: 268 EKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLE 327
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A ++ + E N V+W LLG C H N+++ + + +E G Y L+ N+
Sbjct: 328 DALELVRSMRME-PNSVIWGALLGGCKLHRNLKIAQVAVNESKVLEPNNSGYYTLLVNMY 386
Query: 302 AGVWRYGDAERLRRVVDERNALKF-PGRSLV 331
A V R+ + +R + E K PG S +
Sbjct: 387 AEVNRWSEVANIRATMKELGVEKTSPGSSWI 417
>gi|297728297|ref|NP_001176512.1| Os11g0433100 [Oryza sativa Japonica Group]
gi|62701919|gb|AAX92992.1| hypothetical protein LOC_Os11g24530 [Oryza sativa Japonica Group]
gi|77550326|gb|ABA93123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125534237|gb|EAY80785.1| hypothetical protein OsI_35965 [Oryza sativa Indica Group]
gi|125577016|gb|EAZ18238.1| hypothetical protein OsJ_33779 [Oryza sativa Japonica Group]
gi|255680048|dbj|BAH95240.1| Os11g0433100 [Oryza sativa Japonica Group]
Length = 622
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/330 (37%), Positives = 199/330 (60%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+++ LF ++P R++ +WN+MITG ++ +L+ AR LF+EMP RNV++WT +++GY +
Sbjct: 244 IEEALDLFTKMPIRDVASWNIMITGFIQNKDLKSARQLFDEMPKRNVITWTTMMNGYLQC 303
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+S AL LF M+ + +P+++T L A + Q +H K + F
Sbjct: 304 MQSEMALKLFNCMLV-QGIQPNQVTFLGSLDACSNLAALCEGQQVHQMICKTP-SQFDTF 361
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V + L++ YAKCG I A +F D S+E K+L+SW II+ +A HG G EA+ ++ MQ+
Sbjct: 362 VESTLMNLYAKCGEIRLARNVF-DFSME-KDLISWNGIIAAYAHHGFGIEAMHLYKNMQE 419
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KPN T++ +L+ACSH GLV+EGLK F+ MV++ ++ +HY CL+D+ RAGRLE
Sbjct: 420 NGYKPNDATYVGLLSACSHAGLVDEGLKIFESMVKDNSIVVRDEHYTCLVDLCSRAGRLE 479
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A+++ S + T+ VW LLG C+ HGN +G+ + +LE E G Y L+ NI
Sbjct: 480 DAKRLISWFKIKPTSSTVWSALLGGCNSHGNESIGDLAAKHLLEAEPDNAGTYTLLCNIY 539
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ +A +R ++ R K PG S +
Sbjct: 540 ASAGKWKEAAEIRSEMNVRGLKKQPGCSWI 569
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 139/270 (51%), Gaps = 15/270 (5%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D S LF+ +P R+ +WN+++ GLV+ G LE AR +FE MP R+V+SWT +I G R
Sbjct: 151 VEDASALFNRMPVRDAGSWNILLCGLVRSGSLERARKMFERMPVRDVMSWTTMISGLARN 210
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ A LF M E + ++ A+ +N + + R +++I
Sbjct: 211 GSVDDAWVLFDAM-----PERNVVSWNAMISGYARNHRIEEALDLFTKMPIRDVASWNIM 265
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
++ + + K SA +LF+++ ++N+++WT++++G+ + A++ F M
Sbjct: 266 ITGFIQNKDLK-----SARQLFDEMP--KRNVITWTTMMNGYLQCMQSEMALKLFNCMLV 318
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++PN+VTFL L+ACS+ + EG + +M+ + D L+++ + G +
Sbjct: 319 QGIQPNQVTFLGSLDACSNLAALCEGQQVH-QMICKTPSQFDTFVESTLMNLYAKCGEIR 377
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHG 271
A V S +++ W ++ A + HG
Sbjct: 378 LARNVFDF--SMEKDLISWNGIIAAYAHHG 405
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 132/264 (50%), Gaps = 24/264 (9%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC-RNVVSWTGIIDGYTR 60
+ D +LFD +P+R++V+W M+ + G L+ AR LF+ RNVV+WT ++ GY R
Sbjct: 57 VSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFDRPDARRNVVTWTALLSGYAR 116
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
R + A ALF M E S T+L + A+ G V + + R +++I
Sbjct: 117 ARRVDEAEALFEGMA--ERNVVSWNTMLEAYTAV---GRVEDASALFNRMPVRDAGSWNI 171
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
L+ + G + A K+FE + V ++++SWT++ISG A +G +A F+ M
Sbjct: 172 -----LLCGLVRSGSLERARKMFERMPV--RDVMSWTTMISGLARNGSVDDAWVLFDAMP 224
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ N V++ ++++ + +EE L F KM + D+ + +I + L
Sbjct: 225 ----ERNVVSWNAMISGYARNHRIEEALDLFTKM-----PIRDVASWNIMITGFIQNKDL 275
Query: 241 EQAEKVASGIPSEITNVVVWRTLL 264
+ A ++ +P NV+ W T++
Sbjct: 276 KSARQLFDEMPKR--NVITWTTMM 297
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 59/205 (28%)
Query: 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER 178
H+ SN + A G + A +LF+ + +++VSWT++++ +A GM
Sbjct: 40 HVQDSNWRVAELAAAGRVSDARRLFD--GMPDRDVVSWTAMVAAYARRGM---------- 87
Query: 179 MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH----YGCLIDML 234
++E FD+ PD + + L+
Sbjct: 88 -------------------------LQEARVLFDR--------PDARRNVVTWTALLSGY 114
Query: 235 GRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY 294
RA R+++AE + G+ NVV W T+L A + G VE + ++ + G
Sbjct: 115 ARARRVDEAEALFEGMAER--NVVSWNTMLEAYTAVGRVEDASALFNRMPVRDAGS---- 168
Query: 295 VLMYNI-LAGVWRYGDAERLRRVVD 318
+NI L G+ R G ER R++ +
Sbjct: 169 ---WNILLCGLVRSGSLERARKMFE 190
>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 120/330 (36%), Positives = 197/330 (59%), Gaps = 2/330 (0%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + LF+ +PERNL +WN MITG ++ GEL +AR +F EMP +NVVSWT +I GY +
Sbjct: 178 LDEAFDLFERMPERNLSSWNTMITGFIQNGELAWARKVFNEMPEKNVVSWTTMITGYVQE 237
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
S AL +F M+ P+E T + V A + Q +H K +
Sbjct: 238 GESESALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGLGEGQQVHLLISKSVYQD-RTF 296
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V++ L++ Y+KCG + A K+F+D+ + +++LV W +I+ +A HG G EA+E FE MQ
Sbjct: 297 VASALLNMYSKCGELSIARKIFDDVVISQRDLVLWNGMIAAYAHHGCGMEAIELFEDMQG 356
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ KPN V+++ +L+ACSH GLV+EGL +FD++ + + H+ CL+D+ GRAGRL+
Sbjct: 357 LGFKPNDVSYVELLSACSHAGLVDEGLNYFDELGRDNSIQLREDHHACLVDLCGRAGRLK 416
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + ++ ++ +W LL C+ HG++E+G+ +++ + + G Y+L+ NI
Sbjct: 417 EAYDFIKQLGTKASS-SIWGGLLAGCNAHGDLEIGQLAAKELEKEDPENAGTYLLLSNIY 475
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ +A R+R + E+ K PG S +
Sbjct: 476 ASGRKWREASRVRLKMKEKGLKKQPGCSWI 505
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 137/267 (51%), Gaps = 16/267 (5%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++F+ + ERN+V+WN +I LV+ G +E AR F+EMP R+V+SWT ++ G R R +
Sbjct: 90 EVFERMHERNMVSWNAVIAALVQCGRVEEARRRFDEMPKRDVISWTTMVMGLARSGRVDE 149
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A +F RM E + ++ A+ G +N +L + ++ N +
Sbjct: 150 ARKVFDRM-----PERNVVSWNAMV-----TGYAKNMRLDEAFDLFERMPERNLSSWNTM 199
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF-ERMQKVVLK 185
I + + G + A K+F ++ KN+VSWT++I+G+ G + A++ F E ++ +
Sbjct: 200 ITGFIQNGELAWARKVFNEMP--EKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGAR 257
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG-CLIDMLGRAGRLEQAE 244
PN TF++VL ACS + EG + ++ V D L++M + G L A
Sbjct: 258 PNEGTFVNVLGACSDMAGLGEGQQVH--LLISKSVYQDRTFVASALLNMYSKCGELSIAR 315
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHG 271
K+ + ++V+W ++ A + HG
Sbjct: 316 KIFDDVVISQRDLVLWNGMIAAYAHHG 342
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 132/279 (47%), Gaps = 44/279 (15%)
Query: 12 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPC-RNVVSWTGIIDGYTRMNRSNGALAL 70
+ ER++VTW +I+G +K G + AR LF+ + ++VV+WT ++ GY R+ R A L
Sbjct: 1 MHERDVVTWTAVISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERL 60
Query: 71 FRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG-------FNAFHIH-- 121
F M P + + W +I GYG+ R F H
Sbjct: 61 FEVM-------PVKNVV------SWNT-------MIDGYGKNREVDKAIEVFERMHERNM 100
Query: 122 VS-NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
VS N +I +CG + A + F+++ +++++SWT+++ G A G EA + F+RM
Sbjct: 101 VSWNAVIAALVQCGRVEEARRRFDEMP--KRDVISWTTMVMGLARSGRVDEARKVFDRMP 158
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ N V++ +++ + ++E F++M E ++ + +I + G L
Sbjct: 159 ----ERNVVSWNAMVTGYAKNMRLDEAFDLFERMPER-----NLSSWNTMITGFIQNGEL 209
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERV 279
A KV + +P + NVV W T++ G E +V
Sbjct: 210 AWARKVFNEMPEK--NVVSWTTMITGYVQEGESESALKV 246
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 88/183 (48%), Gaps = 25/183 (13%)
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
+++V+WT++ISG+ G+ +A F+R+ + + VT+ ++L+ +EE +
Sbjct: 4 RDVVTWTAVISGYIKCGLIVDARRLFDRVDAI---KDVVTWTAMLSGYVRLKRIEEAERL 60
Query: 211 FDKMVEECEVLP--DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
F EV+P ++ + +ID G+ +++A +V + N+V W ++ A
Sbjct: 61 F-------EVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMHER--NMVSWNAVIAALV 111
Query: 269 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGR 328
G V E R+ EM + D + ++ G+ R G + R+V D + P R
Sbjct: 112 QCGRV---EEARRRFDEMPK---RDVISWTTMVMGLARSGRVDEARKVFD-----RMPER 160
Query: 329 SLV 331
++V
Sbjct: 161 NVV 163
>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
Length = 528
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/323 (39%), Positives = 202/323 (62%), Gaps = 5/323 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FD + ++ VTW M+ G +K ++ A S F+++P R+VV+WT +I G+ + +
Sbjct: 169 KVFDRMSLKDEVTWGSMLHGYIKCAGVDSALSFFDQVPVRSVVAWTALITGHVQGRQPVR 228
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL LF RMV E P+ +TI+ V A G + ++IHGYG K + +I VSN L
Sbjct: 229 ALELFGRMV-LEGHRPTHVTIVGVLSACADIGALDLGRVIHGYGSKCN-ASLNIIVSNAL 286
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+D YAK G I A +F++ V+ K+ +WT++IS + G GK+A+E F+ M + + P
Sbjct: 287 MDMYAKSGHIEMAFSVFQE--VQSKDSFTWTTMISCCTVQGDGKKALELFQDMLRAGVVP 344
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N VTF+SVL+ACSH GL+EEG++ FD+M + ++ P ++HYGC+ID+LGR G LE+AE +
Sbjct: 345 NSVTFVSVLSACSHSGLIEEGIELFDRMRQLYKIDPLLEHYGCMIDLLGRGGLLEEAEAL 404
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ + E ++V+WR+LL AC GN + E ++I++ E G G YVL++N+ A +
Sbjct: 405 IADMNVE-PDIVIWRSLLSACLVRGNNRLAEIAGKEIVKREPGDDGVYVLLWNMYASSNK 463
Query: 307 YGDAERLRRVVDERNALKFPGRS 329
+ +A +R+ + K PG S
Sbjct: 464 WREAREMRQQMLSLKIFKKPGCS 486
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 132/275 (48%), Gaps = 40/275 (14%)
Query: 30 WGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILA 89
+G + AR LF+E+P +++S+T ++ + +++ A++LF R+VA + P ++
Sbjct: 60 FGRVADARKLFDEIPNPDLISFTSLMSLHLQLDNQREAISLFARVVAAGH-RPDGFAVVG 118
Query: 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS-- 147
A GD + +HG + G + + V N LID Y++CG SA+K+F+ +S
Sbjct: 119 ALSASSGAGDQVVGRAVHGLIFRLGLDG-EVVVGNALIDMYSQCGKFESAVKVFDRMSLK 177
Query: 148 ---------------------------VERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V +++V+WT++I+G H G++ V E
Sbjct: 178 DEVTWGSMLHGYIKCAGVDSALSFFDQVPVRSVVAWTALITG---HVQGRQPVRALELFG 234
Query: 181 KVVL---KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
++VL +P VT + VL+AC+ G ++ G + +C +I L+DM ++
Sbjct: 235 RMVLEGHRPTHVTIVGVLSACADIGALDLG-RVIHGYGSKCNASLNIIVSNALMDMYAKS 293
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
G +E A V + S+ + W T++ C+ G+
Sbjct: 294 GHIEMAFSVFQEVQSK--DSFTWTTMISCCTVQGD 326
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 15/174 (8%)
Query: 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 155
Q +R Q IH G + VS + YA G + A KLF++I +L+S
Sbjct: 23 QCKKLRELQRIHALAIAHGLHPHQQSVSCKIFRCYADFGRVADARKLFDEIP--NPDLIS 80
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHG-----GLVEEGLKF 210
+TS++S +EA+ F R+ +P+ + L+A S G GL F
Sbjct: 81 FTSLMSLHLQLDNQREAISLFARVVAAGHRPDGFAVVGALSASSGAGDQVVGRAVHGLIF 140
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
++ + EV+ LIDM + G+ E A KV + + + V W ++L
Sbjct: 141 --RLGLDGEVVVG----NALIDMYSQCGKFESAVKVFDRM--SLKDEVTWGSML 186
>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/324 (40%), Positives = 196/324 (60%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FDE+ RN V+WN MI G ++ GE+ A LF++M R+ +SWT +I G+ + A
Sbjct: 149 MFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQA 208
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L FR M EP +TI++V A G + I+ + K+ F +I +SN LI
Sbjct: 209 LEWFREM-QLAGVEPDYVTIISVLAACANLGALGLGLWINRFVMKQDFKD-NIKISNSLI 266
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y++CGCI A ++FE + +++LVSW S+I GFA++G +EA+E F M+K +P+
Sbjct: 267 DMYSRCGCIRLARQVFEQMP--KRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPD 324
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
V+F L ACSH GLV+EGL+FFD M ++ P I+HYGCL+D+ RAGRLE A V
Sbjct: 325 GVSFTGALTACSHSGLVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVI 384
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+ +P + N VV +LL AC HG+V + ER+ + + E++ G +YVL+ NI A V R+
Sbjct: 385 ANMPMK-PNEVVLGSLLAACRTHGDVGLAERLMKYLCEVDPGSDSNYVLLSNIYAAVGRW 443
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
A ++R+ + K PG S +
Sbjct: 444 DGASKVRKKMKALGIHKKPGFSSI 467
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 121/262 (46%), Gaps = 35/262 (13%)
Query: 44 PCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAI--WQNGDVR 101
P +VSWT I + R + A A F RM P+ IT L + A + +R
Sbjct: 50 PIDPIVSWTSSIALHCRNGQLPEAAAEFSRM-QIAGVRPNHITFLTLLSACTDFPLEGLR 108
Query: 102 NCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV------------- 148
IH Y K G + ++ V L+D Y+KCG + A +F+++ V
Sbjct: 109 FGGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGC 168
Query: 149 ----------------ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
++ +SWTS+I GF G ++A+E F MQ ++P+ VT +
Sbjct: 169 MRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTII 228
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
SVL AC++ G + GL + ++ V + + +IK LIDM R G + A +V +P
Sbjct: 229 SVLAACANLGALGLGL-WINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPK 287
Query: 253 EITNVVVWRTLLGACSFHGNVE 274
++V W +++ + +G+ E
Sbjct: 288 R--SLVSWNSMIVGFALNGHAE 307
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 10/131 (7%)
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
+VSWTS I+ +G EA F RMQ ++PN +TFL++L+AC+ L EGL+F
Sbjct: 54 IVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPL--EGLRFGG 111
Query: 213 KMVEECEVL----PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
+ L ++ L+DM + G+L+ A + + + N V W T++ C
Sbjct: 112 SIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEM--HVRNSVSWNTMIDGCM 169
Query: 269 FHGNVEMGERV 279
+G E+GE +
Sbjct: 170 RNG--EVGEAI 178
>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cucumis sativus]
Length = 525
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 129/334 (38%), Positives = 194/334 (58%), Gaps = 13/334 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L K+F L +N V+WN M+ G ++ GE+E A LF+EMP R+ +SWT +I+G +
Sbjct: 146 LGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKH 205
Query: 62 NRSNGALALFRRM----VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
S AL F +M VA +Y ++I+AV A G + +H + + F
Sbjct: 206 GYSEQALECFHQMQRSGVAADY-----VSIIAVLAACADLGALTLGLWVHRFVMPQEFKD 260
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
+I +SN LID Y++CGCI A ++F + + ++ LVSW SII GFA++G E++E F
Sbjct: 261 -NIKISNSLIDMYSRCGCIEFARQVF--VKMAKRTLVSWNSIIVGFAVNGFADESLEFFY 317
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
MQK KP+ V++ L ACSH GLV +GL+ FD M ++ P I+HYGC++D+ GRA
Sbjct: 318 AMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRA 377
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297
GRLE A + +P + N VV +LL AC HG+V + ER+ + + +++ YVL+
Sbjct: 378 GRLEDALNMIEEMPMK-PNEVVLGSLLAACRTHGDVNLAERLMKHLFKLDPEGDAYYVLL 436
Query: 298 YNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
NI A + ++ A +RR + R K PG S V
Sbjct: 437 SNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSV 470
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 108/240 (45%), Gaps = 33/240 (13%)
Query: 38 SLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAI--W 95
S F +V WT + Y R + + A A F RM EP+ IT + + A +
Sbjct: 47 SKFNPNSVDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAG-VEPNHITFITLLSACADF 105
Query: 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER----- 150
+ +HGY K G + H+ V LID Y+KC + A K+F ++ V+
Sbjct: 106 PSESFFFASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWN 165
Query: 151 ------------------------KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
++ +SWT++I+G HG ++A+E F +MQ+ +
Sbjct: 166 TMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAA 225
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ V+ ++VL AC+ G + GL + + V E +IK LIDM R G +E A +V
Sbjct: 226 DYVSIIAVLAACADLGALTLGL-WVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQV 284
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
+V WTS ++ + +G EA F RM+ ++PN +TF+++L+AC+ E F
Sbjct: 57 IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACA--DFPSESFFFAS 114
Query: 213 KMV-EECEVLPDIKHY---GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
+ C+ D H LIDM + +L A KV + + N V W T+L
Sbjct: 115 SLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNL--GVKNSVSWNTMLNGFM 172
Query: 269 FHGNVEMG 276
+G +E+
Sbjct: 173 RNGEIELA 180
>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
Length = 617
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 200/332 (60%), Gaps = 8/332 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D LFD +P R++VTW+ MI G K G + A++LF++MP R+VVS+ +I GY +
Sbjct: 272 IEDAKYLFDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMIAGYVQN 331
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY-GEKRGFNAFHI 120
+ AL +F M + P E T++ V AI Q G + +H Y EK+ F +
Sbjct: 332 RYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKL 391
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V+ LID Y+KCG I A+ +F+ I E K++ W ++I G A+HG+G+ A + +++
Sbjct: 392 GVA--LIDMYSKCGSIQHAMLVFKGI--ENKSIDHWNAMIGGLAIHGLGESAFDMLLQIE 447
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ +KP+ +TF+ +LNACSH GLV+EGL F+ M + ++ P ++HYGC++D+L R+G +
Sbjct: 448 RRSIKPDDITFVGLLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSI 507
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG-GDYVLMYN 299
E A+ + +P E N V+WRT L AC+ H E GE V + ++ E GY YVL+ N
Sbjct: 508 ELAKNLIEEMPIE-PNDVIWRTFLAACNHHKEFETGELVAKHLI-WEAGYNPSSYVLLSN 565
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ A ++ D R+R ++ ER K PG S +
Sbjct: 566 LYASFGKWKDVRRIRTIMKERKIEKVPGCSWI 597
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 145/286 (50%), Gaps = 22/286 (7%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDGYTRMNRS 64
++FD +P+R+ V++N MI G VK G E AR LF+ MP +N++SW +I GY + +
Sbjct: 181 QIFDRMPQRDSVSYNSMIDGYVKCGSTESARELFDLMPEEMKNLISWNSMISGYAQTSDG 240
Query: 65 -NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
+ A LF M + I+ ++ ++G + + + + +R +
Sbjct: 241 VDIASKLFSEM-----PDKDLISWNSMIDGYVKHGRIEDAKYLFDVMPRRDVVTW----- 290
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
+ +ID YAK G + A LF+ + +++VS+ S+I+G+ + EA+E F M+K
Sbjct: 291 STMIDGYAKLGFVHQAKTLFDQMP--HRDVVSYNSMIAGYVQNRYNMEALEIFSDMEKES 348
Query: 184 -LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
L P+ T + VL+A + G + + + +VE+ L K LIDM + G ++
Sbjct: 349 HLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGG-KLGVALIDMYSKCGSIQH 407
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
A V GI E ++ W ++G + HG +GE +L++ER
Sbjct: 408 AMLVFKGI--ENKSIDHWNAMIGGLAIHG---LGESAFDMLLQIER 448
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 78/329 (23%), Positives = 135/329 (41%), Gaps = 61/329 (18%)
Query: 33 LEYARSLFEEMPCRNVVS----------WTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
+E+AR +F E R+ W +I ++ AL LF M+
Sbjct: 65 VEFARFVFHEYXIRSFSPGGGDXEDXYLWNAVIKSHSHGTDPRRALLLFCLMLE-NGVSV 123
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI--------------- 127
+ ++ V A + G V+ IHG+ +K G + + + NCLI
Sbjct: 124 DKFSLSLVLKACSRLGLVKEGMQIHGFLKKTGLWS-DLFLQNCLIGLYLKCGWLGFARQI 182
Query: 128 ----------------DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKE 171
D Y KCG SA +LF+ + E KNL+SW S+ISG+A G +
Sbjct: 183 FDRMPQRDSVSYNSMIDGYVKCGSTESARELFDLMPEEMKNLISWNSMISGYAQTSDGVD 242
Query: 172 -AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCL 230
A + F M L +++ S+++ G +E+ FD M D+ + +
Sbjct: 243 IASKLFSEMPDKDL----ISWNSMIDGYVKHGRIEDAKYLFDVMPRR-----DVVTWSTM 293
Query: 231 IDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL-GACSFHGNVEMGERVTRKILEMERG 289
ID + G + QA+ + +P +VV + +++ G N+E E + +E E
Sbjct: 294 IDGYAKLGFVHQAKTLFDQMPHR--DVVSYNSMIAGYVQNRYNMEALEIFSD--MEKESH 349
Query: 290 YGGDYVLMYNILAGVWRYGDAERLRRVVD 318
D + +L+ + + G RL + +D
Sbjct: 350 LSPDETTLVIVLSAIAQLG---RLSKAMD 375
>gi|297599623|ref|NP_001047477.2| Os02g0625100 [Oryza sativa Japonica Group]
gi|125582938|gb|EAZ23869.1| hypothetical protein OsJ_07586 [Oryza sativa Japonica Group]
gi|255671102|dbj|BAF09391.2| Os02g0625100 [Oryza sativa Japonica Group]
Length = 493
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/324 (36%), Positives = 188/324 (58%), Gaps = 4/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
FD +PE+N+V+WN M+ + G L AR LF+ MP RN +W +I G + + A
Sbjct: 161 FFDAMPEKNVVSWNTMLGAYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEA 220
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L +F MVA P+E +++ A Q + + +HGY E+ A ++ ++
Sbjct: 221 LRVFSDMVASGVV-PNEPALVSTVSACTQLRWMEHGTWVHGYAERELNGAMSAVLATAIV 279
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y KCG I A+++F + V +N+ SW S+I+G AM+G ++A+ F +MQ ++PN
Sbjct: 280 DMYGKCGSIRDAVRVFAAMPV--RNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPN 337
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TF+ +L+ACSH GLV+EG F KMV + P +HYG ++D+LGR+G + +A
Sbjct: 338 DITFIGLLSACSHSGLVDEGRWLFYKMVNHFGIQPVPEHYGLMVDLLGRSGHVREAVDFV 397
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P E + +W L GAC HG VE+GE V +K++E+E +G Y+L+ NI A R+
Sbjct: 398 KSMPVE-PHPGLWGALAGACKIHGEVELGEEVAKKLIELEPQHGSRYILLSNIYATSNRW 456
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
D +RR++ +R K G ++V
Sbjct: 457 DDMANVRRILKDRKVPKGTGNAIV 480
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 78/157 (49%), Gaps = 16/157 (10%)
Query: 103 CQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISG 162
++H + G +A ++V N Y + SA +LF + S + ++V+WT++++G
Sbjct: 90 ASVVHSLAVRLG-HARDVYVVNAAASAYFAAADVASAERLFSEASRDVADVVTWTTMVTG 148
Query: 163 FAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP 222
A G + A F+ M + N V++ ++L A + G++ + K FD+M
Sbjct: 149 HANAGDVERARWFFDAMP----EKNVVSWNTMLGAYARAGMLPKARKLFDRMPSR----- 199
Query: 223 DIKHYGCLIDMLGRAGRLEQA-----EKVASG-IPSE 253
+ +G +I L ++ E+A + VASG +P+E
Sbjct: 200 NAATWGSMITGLLQSDHCEEALRVFSDMVASGVVPNE 236
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV----VSWTGIIDG 57
++D ++F +P RN+ +WN MI GL G A SLF +M V +++ G++
Sbjct: 288 IRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPNDITFIGLLSA 347
Query: 58 YTRMNRSNGALALFRRMV 75
+ + LF +MV
Sbjct: 348 CSHSGLVDEGRWLFYKMV 365
>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 603
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/322 (38%), Positives = 199/322 (61%), Gaps = 13/322 (4%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEM--PCRNVVSWTGIIDGYTRMNRSNGALALF 71
+ N+ +I + +++ AR +F+ + PC VV + +I GY R NR N AL+LF
Sbjct: 161 DDNVYVCPTLINMYTECEDVDSARCVFDRIVEPC--VVCYNAMITGYARRNRPNEALSLF 218
Query: 72 RRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYA 131
R M +Y +P+EIT+L+V + G + + IH Y +K F + + V+ LID +A
Sbjct: 219 REMQG-KYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKY-VKVNTALIDMFA 276
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191
KCG + A+ +FE + K+ +W+++I +A HG ++++ FERM+ ++P+ +TF
Sbjct: 277 KCGSLDDAVSIFEKM--RYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITF 334
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
L +LNACSH G VEEG K+F +MV + ++P IKHYG ++D+L RAG LE A + +P
Sbjct: 335 LGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLP 394
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA--GVWRYGD 309
T ++WR LL ACS H N+++ E+V+ +I E++ +GGDYV++ N+ A W Y D
Sbjct: 395 ISPTP-MLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVD 453
Query: 310 AERLRRVVDERNALKFPGRSLV 331
+ LR+V+ +R A+K PG S +
Sbjct: 454 S--LRKVMKDRKAVKVPGCSSI 473
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 17/249 (6%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR-----MVACEYTEPSEI 85
+ YAR LFE M ++V + + GY+R +LF ++ YT PS +
Sbjct: 77 SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLL 136
Query: 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFED 145
AV A+ + + +H K G + +++V LI+ Y +C + SA +F+
Sbjct: 137 KACAVAKALEEG------RQLHCLSMKLGLDD-NVYVCPTLINMYTECEDVDSARCVFDR 189
Query: 146 ISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVE 205
I VE +V + ++I+G+A EA+ F MQ LKPN +T LSVL++C+ G ++
Sbjct: 190 I-VE-PCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLD 247
Query: 206 EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
G K+ K ++ +K LIDM + G L+ A + + + T W ++
Sbjct: 248 LG-KWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQ--AWSAMIV 304
Query: 266 ACSFHGNVE 274
A + HG E
Sbjct: 305 AYANHGKAE 313
>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Brachypodium distachyon]
Length = 618
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 200/331 (60%), Gaps = 5/331 (1%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
+ + LF ++P R++ +WN+MITG ++ LE A+ LF++MP RNVV+WT +++GY +
Sbjct: 237 MIDEAHDLFMKMPTRDIASWNIMITGFIQNKNLERAQELFDKMPRRNVVTWTTMMNGYLQ 296
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+S AL LF M+ + P+++T L A + Q +H K F F
Sbjct: 297 SIQSETALQLFNGML-IDGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTPFQ-FDT 354
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+ + L++ YAKCG I A K+F ++S E K+++SW +I+ +A HG+G EA+ +E+MQ
Sbjct: 355 FIESTLMNLYAKCGEIILARKVF-NLSKE-KDVISWNGMIAAYAHHGVGLEAIHLYEKMQ 412
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ KPN VT++ +L+ACSH GLV+EGL+ F+ MV++ + +HY CLID+ RAGRL
Sbjct: 413 ENGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRL 472
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
A+++ + E ++ VW LLG C+ HGN +G+ R +LE E G Y L+ NI
Sbjct: 473 GDAKRLIHFLKVEPSS-TVWNALLGGCNSHGNESIGDLAARNLLEAEPNNAGTYTLLCNI 531
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ +A ++R +++R K PG S +
Sbjct: 532 YASAGKWKEAAKIRSEMNDRGLKKQPGCSWI 562
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 136/268 (50%), Gaps = 15/268 (5%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
D LF+ +P R+ +WN+++ LV+ G ++ AR LF+ MP RNV++WT ++ G R
Sbjct: 147 DACTLFNGMPVRDAGSWNILLAALVRSGNIDKARKLFDRMPERNVMAWTTMVAGIARSGS 206
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
N A ALF M E + ++ A+ +G RN + + I
Sbjct: 207 VNEARALFDGM-----PERNVVSWNAMI-----SGYARNHMIDEAHDLFMKMPTRDIASW 256
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N +I + + + A +LF+ + R+N+V+WT++++G+ + A++ F M
Sbjct: 257 NIMITGFIQNKNLERAQELFD--KMPRRNVVTWTTMMNGYLQSIQSETALQLFNGMLIDG 314
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
++PN+VTFL ++ACS+ + EG + +M+ + D L+++ + G + A
Sbjct: 315 IRPNQVTFLGAVDACSNLAGLSEGQQVH-QMICKTPFQFDTFIESTLMNLYAKCGEIILA 373
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHG 271
KV + S+ +V+ W ++ A + HG
Sbjct: 374 RKVFN--LSKEKDVISWNGMIAAYAHHG 399
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 130/264 (49%), Gaps = 24/264 (9%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC-RNVVSWTGIIDGYTR 60
+ D +LFD P+R++V+W ++ G L AR+LF+ RNVV+WT ++ GY R
Sbjct: 51 VSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFDRPDARRNVVTWTALLSGYAR 110
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
R + A ALF RM E S T+L + + + GD C L +G + +
Sbjct: 111 AGRVDEAEALFGRMP--ERNVVSWNTMLEAYTSSGRVGDA--CTLFNGMPVRDAGSW--- 163
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
N L+ + G I A KLF+ + +N+++WT++++G A G EA F+ M
Sbjct: 164 ---NILLAALVRSGNIDKARKLFD--RMPERNVMAWTTMVAGIARSGSVNEARALFDGMP 218
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ N V++ ++++ + +++E F KM DI + +I + L
Sbjct: 219 ----ERNVVSWNAMISGYARNHMIDEAHDLFMKMPTR-----DIASWNIMITGFIQNKNL 269
Query: 241 EQAEKVASGIPSEITNVVVWRTLL 264
E+A+++ +P NVV W T++
Sbjct: 270 ERAQELFDKMPRR--NVVTWTTMM 291
>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Glycine max]
Length = 534
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 198/331 (59%), Gaps = 5/331 (1%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L + ++FDEL + ++V N MI GL K GE++ +R LF+ MP R V+W +I GY R
Sbjct: 174 LLSEARRVFDELVDLDVVACNSMIMGLAKCGEVDKSRRLFDNMPTRTRVTWNSMISGYVR 233
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
R AL LFR+M E EPSE T++++ A G +++ + +H Y KRG ++
Sbjct: 234 NKRLMEALELFRKMQG-ERVEPSEFTMVSLLSACAHLGALKHGEWVHDY-VKRGHFELNV 291
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V +ID Y KCG I A+++FE + + L W SII G A++G ++A+E F +++
Sbjct: 292 IVLTAIIDMYCKCGVIVKAIEVFE--ASPTRGLSCWNSIIIGLALNGYERKAIEYFSKLE 349
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
LKP+ V+F+ VL AC + G V + +F M+ + E+ P IKHY C++++LG+A L
Sbjct: 350 ASDLKPDHVSFIGVLTACKYIGAVGKARDYFSLMMNKYEIEPSIKHYTCMVEVLGQAALL 409
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+AE++ G+P + + ++W +LL +C HGNVE+ +R +++ E+ Y+LM N+
Sbjct: 410 EEAEQLIKGMPLK-ADFIIWGSLLSSCRKHGNVEIAKRAAQRVCELNPSDASGYLLMSNV 468
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ +A R ++ ER A K PG S +
Sbjct: 469 QAASNQFEEAMEQRILMRERLAEKEPGCSSI 499
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 137/304 (45%), Gaps = 39/304 (12%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKW-----GELEYARSLFEEMPCRNVVSWTGIID 56
+KD K+ + + L V + ++ + G++ YA LF +P N+ W II
Sbjct: 38 MKDLQKIHAHIIKTGLAHHTVAASRVLTFCASSSGDINYAYLLFTTIPSPNLYCWNTIIR 97
Query: 57 GYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN 116
G++R + + A++LF M+ C P +T +VF A Q G + +HG K G
Sbjct: 98 GFSRSSTPHLAISLFVDML-CSSVLPQRLTYPSVFKAYAQLGAGYDGAQLHGRVVKLGLE 156
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDI-----------------------------S 147
+ N +I YA G + A ++F+++ +
Sbjct: 157 KDQF-IQNTIIYMYANSGLLSEARRVFDELVDLDVVACNSMIMGLAKCGEVDKSRRLFDN 215
Query: 148 VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEG 207
+ + V+W S+ISG+ + EA+E F +MQ ++P+ T +S+L+AC+H G ++ G
Sbjct: 216 MPTRTRVTWNSMISGYVRNKRLMEALELFRKMQGERVEPSEFTMVSLLSACAHLGALKHG 275
Query: 208 LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC 267
++ V+ ++ +IDM + G + +A +V P+ + W +++
Sbjct: 276 -EWVHDYVKRGHFELNVIVLTAIIDMYCKCGVIVKAIEVFEASPTR--GLSCWNSIIIGL 332
Query: 268 SFHG 271
+ +G
Sbjct: 333 ALNG 336
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 190/327 (58%), Gaps = 6/327 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FD + +N+ W M+TG V G+L+ AR LFE P R+VV WT +I+GY + N
Sbjct: 265 EIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVVLWTAMINGYVQFNHFED 324
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ALF M EP + ++ + Q G + + IH Y ++ + VS L
Sbjct: 325 AIALFGEM-QIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHNYIDENRIKMDAV-VSTAL 382
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
I+ YAKCGCI +L++F ++ + SWTSII G AM+G EA+E FE MQ LKP
Sbjct: 383 IEMYAKCGCIEKSLEIFN--GLKDMDTTSWTSIICGLAMNGKTSEALELFEAMQTCGLKP 440
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +TF++VL+AC H GLVEEG K F M + P+++HYGC ID+LGRAG L++AE++
Sbjct: 441 DDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLEHYGCFIDLLGRAGLLQEAEEL 500
Query: 247 ASGIPSEITNVVV--WRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+P + ++V + LL AC +GN++MGER+ + +++ + L+ +I A
Sbjct: 501 VKKLPDQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVKSSDSSLHTLLASIYASA 560
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
R+ D ++R + + K PG S +
Sbjct: 561 DRWEDVRKVRSKMKDLGIKKVPGYSAI 587
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 134/287 (46%), Gaps = 44/287 (15%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ + G +E +FEEMP R+ VSW +I GY R R A+ ++RRM
Sbjct: 147 NSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNE 206
Query: 81 EPSEITILAVFPAIWQNGDVRNCQL---IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIF 137
+P+E T+++ A +RN +L IH Y + I + N L+D Y KCGC+
Sbjct: 207 KPNEATVVSTLSAC---AVLRNLELGKEIHDYIANE-LDLTPI-MGNALLDMYCKCGCVS 261
Query: 138 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER------------------- 178
A ++F+ + V KN+ WTS+++G+ + G +A FER
Sbjct: 262 VAREIFDAMIV--KNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVVLWTAMINGYVQF 319
Query: 179 ------------MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH 226
MQ ++P++ +++L C+ G +E+G K+ ++E + D
Sbjct: 320 NHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQG-KWIHNYIDENRIKMDAVV 378
Query: 227 YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
LI+M + G +E++ ++ +G+ + W +++ + +G
Sbjct: 379 STALIEMYAKCGCIEKSLEIFNGLKD--MDTTSWTSIICGLAMNGKT 423
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 135/308 (43%), Gaps = 46/308 (14%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
+++F+ + +L +N+MI VK G L A SLF+++ R V W
Sbjct: 61 ANRIFNHIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQLRERGV--W------------- 105
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
P T V I G+VR + IH + K G F +V N
Sbjct: 106 -----------------PDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLE-FDPYVCN 147
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ-KVV 183
L+D YA+ G + ++FE++ ++ VSW +ISG+ +EAV+ + RMQ +
Sbjct: 148 SLMDMYAELGLVEGFTQVFEEMP--ERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESN 205
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
KPN T +S L+AC+ +E G + D + E ++ P + + L+DM + G + A
Sbjct: 206 EKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDLTPIMGN--ALLDMYCKCGCVSVA 263
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
++ + + NV W +++ G ++ + ER D VL ++ G
Sbjct: 264 REIFDAMI--VKNVNCWTSMVTGYVICGQLDQARYL------FERSPSRDVVLWTAMING 315
Query: 304 VWRYGDAE 311
++ E
Sbjct: 316 YVQFNHFE 323
>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Glycine max]
Length = 521
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/323 (38%), Positives = 190/323 (58%), Gaps = 5/323 (1%)
Query: 9 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGAL 68
FD++ RNLV+WN MI G ++ G+ E A +F+ +P +N +SWT +I G+ + + AL
Sbjct: 153 FDQMGVRNLVSWNTMIDGYMRNGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEAL 212
Query: 69 ALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLID 128
FR M P +T++AV A G + +H + F ++ VSN LID
Sbjct: 213 ECFREM-QLSGVAPDYVTVIAVIAACANLGTLGLGLWVHRLVMTQDFRN-NVKVSNSLID 270
Query: 129 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR 188
Y++CGCI A ++F+ + ++ LVSW SII GFA++G+ EA+ F MQ+ KP+
Sbjct: 271 MYSRCGCIDLARQVFD--RMPQRTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDG 328
Query: 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
V++ L ACSH GL+ EGL+ F+ M +LP I+HYGCL+D+ RAGRLE+A V
Sbjct: 329 VSYTGALMACSHAGLIGEGLRIFEHMKRVRRILPRIEHYGCLVDLYSRAGRLEEALNVLK 388
Query: 249 GIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
+P + N V+ +LL AC GN+ + E V ++E++ G +YVL+ NI A V ++
Sbjct: 389 NMPMK-PNEVILGSLLAACRTQGNIGLAENVMNYLIELDSGGDSNYVLLSNIYAAVGKWD 447
Query: 309 DAERLRRVVDERNALKFPGRSLV 331
A ++RR + ER K PG S +
Sbjct: 448 GANKVRRRMKERGIQKKPGFSSI 470
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 111/255 (43%), Gaps = 34/255 (13%)
Query: 48 VVSWTGIIDGYTRMNRSNGALALFRRM--VACEYTEPSEITILAVFPAIWQNGDVRNCQL 105
+VSWT I Y + A + F +M A E + IT+L+ +
Sbjct: 56 IVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTA 115
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER--------------- 150
IH + K G + + V LID YAKCG + SA F+ + V
Sbjct: 116 IHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNG 175
Query: 151 --------------KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLN 196
KN +SWT++I GF +EA+E F MQ + P+ VT ++V+
Sbjct: 176 KFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIA 235
Query: 197 ACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256
AC++ G + GL + ++V + ++K LIDM R G ++ A +V +P
Sbjct: 236 ACANLGTLGLGL-WVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQR--T 292
Query: 257 VVVWRTLLGACSFHG 271
+V W +++ + +G
Sbjct: 293 LVSWNSIIVGFAVNG 307
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 86/213 (40%), Gaps = 46/213 (21%)
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS------------- 199
+VSWT+ I+ + G +A F +M++ ++PN +TF+++L+AC+
Sbjct: 56 IVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTA 115
Query: 200 -HGGLVEEGLKFFDKMVEECEV--------------------LPDIKHYGCLIDMLGRAG 238
H + + GL D MV + + ++ + +ID R G
Sbjct: 116 IHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNG 175
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME-RGYGGDYVLM 297
+ E A +V G+P + N + W L+G + E EM+ G DYV +
Sbjct: 176 KFEDALQVFDGLP--VKNAISWTALIGGFV---KKDYHEEALECFREMQLSGVAPDYVTV 230
Query: 298 YNILAGVWRYGD------AERLRRVVDERNALK 324
++A G RL D RN +K
Sbjct: 231 IAVIAACANLGTLGLGLWVHRLVMTQDFRNNVK 263
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 121/317 (38%), Positives = 190/317 (59%), Gaps = 5/317 (1%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
RN ++ K GE+ AR LF+ M R+VV+W+ +I GYT+ ++ AL LF M
Sbjct: 254 RNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEM 313
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
EP+++T+++V A G + + +H Y ++ + I + L+D YAKCG
Sbjct: 314 QLAR-VEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTI-LGTALVDFYAKCG 371
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
CI A++ FE + V KN +WT++I G A +G G+EA+E F M++ ++P VTF+ V
Sbjct: 372 CIDDAVEAFESMPV--KNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGV 429
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L ACSH LVEEG + FD M + + P ++HYGC++D+LGRAG +++A + +P E
Sbjct: 430 LMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIE- 488
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLR 314
N V+WR LL +C+ H NV +GE ++I+ + + GDYVL+ NI A ++ DA +R
Sbjct: 489 PNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVR 548
Query: 315 RVVDERNALKFPGRSLV 331
+ + +R K PG SL+
Sbjct: 549 KEMKDRGIEKTPGCSLI 565
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 108/244 (44%), Gaps = 27/244 (11%)
Query: 33 LEYARSLFE-------EMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEI 85
L YA SLF PC NV ++ + AL LF M+ P++
Sbjct: 66 LPYAVSLFRLGPRPPLSTPCYNV-----LMRAFLHAGHPEDALHLFIEMLHAASACPADQ 120
Query: 86 TILAVFPAIWQNGDVRNCQL-----IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
A R C L + Y KRG A +S+ LI YA CG + +A
Sbjct: 121 HTAACA----LKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSS-LIHMYASCGDVAAAR 175
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
+F+ + E +V W +I++ + +G E VE F+ M +V + + VT +SV+ AC
Sbjct: 176 LVFD--AAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGR 233
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
G + G K+ V+E + + K L+DM + G + +A ++ G+ S +VV W
Sbjct: 234 IGDAKLG-KWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSR--DVVAW 290
Query: 261 RTLL 264
++
Sbjct: 291 SAMI 294
>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
Length = 640
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 115/327 (35%), Positives = 193/327 (59%), Gaps = 4/327 (1%)
Query: 8 LFDEL-PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
LFD + P+ ++V+ M+T K G L+ ARSLF+ +P ++++ W ++DGYT+ R +
Sbjct: 183 LFDGMQPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSE 242
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH--VSN 124
AL LFRRM+ EP E++++ A+ Q G + + +H + ++ V
Sbjct: 243 ALRLFRRMLRSG-VEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGT 301
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LID Y KCG + A+ +F D+ +++V+W ++++G+AMHG +EA+ F +++ L
Sbjct: 302 ALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQLRAQGL 361
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
P +TF+ VLNACSH GLV+EG + F M EE + P ++HYGC++D+LGRAGR+E+A
Sbjct: 362 WPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEHYGCMVDLLGRAGRVEEAF 421
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
++ + + V+W +LL AC H N+E+G+R+ ++ G YVL+ N+ A
Sbjct: 422 ELVQSMTRTKPDAVMWASLLAACRLHKNMELGQRIADHLVANGLANSGTYVLLSNMYAAA 481
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
+ + R+R ++ K PG S V
Sbjct: 482 GNWREVGRVRAMMRASGIQKEPGCSAV 508
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 110/275 (40%), Gaps = 38/275 (13%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G L+ A +L P V +T I ++ + ALAL M+ P+ T+ A
Sbjct: 76 GRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAHTLSAS 135
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNA-------------------------------FH 119
PA G + + +HGY K + H
Sbjct: 136 LPAC---GGLAVGRALHGYAVKLALSGEPYVATALLGMYARAGDAAAARVLFDGMQPDPH 192
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+ ++ YAK G + A LF+ + K+L+ W +++ G+ HG EA+ F RM
Sbjct: 193 VVSVTAMLTCYAKMGLLDDARSLFDGL--PSKDLICWNAMMDGYTQHGRPSEALRLFRRM 250
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEG--LKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
+ ++P+ V+ + L+A + G E G L F V + + LIDM +
Sbjct: 251 LRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKC 310
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
G LE A V + + ++V W ++ + HG+
Sbjct: 311 GSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGH 345
>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
Length = 545
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/324 (40%), Positives = 197/324 (60%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FD + ++ VTW M+ G +K ++ A S F +MP ++ VSWT +I G+ + + A
Sbjct: 176 VFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQA 235
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LF +M+ E P+ ITI+ V A G + + IHGYG K +I V+N L+
Sbjct: 236 LELFGKML-LEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATT-NIIVTNALM 293
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D YAK G I SA +FE+ V+ K+ +WT++IS F + G G++AVE F M + + PN
Sbjct: 294 DMYAKSGSIASAFSVFEE--VQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPN 351
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
VTF+SVL+ACSH GL++EG + FDKM E + P ++HYGC++D+LGR G LE+AE +
Sbjct: 352 SVTFVSVLSACSHAGLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALI 411
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+ E ++V+WR+LL AC HGN + E +I++ E G G YVL++N+ A R+
Sbjct: 412 DHMDVE-PDIVIWRSLLSACLAHGNDRLAEIAGMEIIKREPGDDGVYVLLWNMYALSNRW 470
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
+A +R+ + R K PG S +
Sbjct: 471 KEALDMRKQMLSRKIYKKPGCSWI 494
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 139/322 (43%), Gaps = 38/322 (11%)
Query: 28 VKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITI 87
++G A LF+E+P +++S+T ++ + +++ A+++F +A + P
Sbjct: 64 AEFGRPADAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGH-RPDGFAA 122
Query: 88 LAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS 147
+ A GD R ++HG + G ++ + V N L+D Y +CG A +F+ +
Sbjct: 123 VGALSASGGLGDQRIGSVVHGLIFRCGLDS-ELVVCNALVDMYCRCGKFEPARTVFDRML 181
Query: 148 VER-----------------------------KNLVSWTSIISGFAMHGMGKEAVENFER 178
V+ K+ VSWT++I+G +A+E F +
Sbjct: 182 VKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGK 241
Query: 179 MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
M +PN +T + VL+AC+ G ++ G + + +I L+DM ++G
Sbjct: 242 MLLEGHRPNHITIVGVLSACADIGALDLG-RAIHGYGSKSNATTNIIVTNALMDMYAKSG 300
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER-GYGGDYVLM 297
+ A V + ++ + W T++ + + GN G + +M R G + V
Sbjct: 301 SIASAFSVFEEV--QMKDAFTWTTMISSFTVQGN---GRKAVELFWDMLRSGILPNSVTF 355
Query: 298 YNILAGVWRYGDAERLRRVVDE 319
++L+ G + R + D+
Sbjct: 356 VSVLSACSHAGLIQEGRELFDK 377
>gi|356518777|ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 737
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/328 (38%), Positives = 194/328 (59%), Gaps = 8/328 (2%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+F +PERN+V+W M+ + L+ A +F++MP +N VSWT ++ G+ R + A
Sbjct: 159 VFCYMPERNVVSWTSMVVAYTRACRLDEACRVFKDMPVKNTVSWTALLTGFVRNGGCDEA 218
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY---GEKRGFNAFHIHVSN 124
+F++M+ E PS T ++V A Q + + +HG G+K G N F+++V N
Sbjct: 219 FDVFKQMLE-EGVRPSAPTFVSVIDACAQEALIGRGKQVHGQIIRGDKSG-NLFNVYVCN 276
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LID YAKCG + SA LFE + +++V+W ++I+GFA +G G+E++ F RM + +
Sbjct: 277 ALIDMYAKCGDMKSAENLFEMAPM--RDVVTWNTLITGFAQNGHGEESLAVFRRMIEAKV 334
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
+PN VTFL VL+ C+H GL EGL+ D M + V P +HY LID+LGR RL +A
Sbjct: 335 EPNHVTFLGVLSGCNHAGLDNEGLQLVDLMERQYGVKPKAEHYALLIDLLGRRNRLMEAM 394
Query: 245 KVASGIPSEITN-VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
+ +P I N + VW +LGAC HGN+++ + K+ E+E G YV++ NI A
Sbjct: 395 SLIEKVPDGIKNHIAVWGAVLGACRVHGNLDLARKAAEKLFELEPENTGRYVMLANIYAA 454
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
++G A+R+R V+ ER K P S +
Sbjct: 455 SGKWGGAKRIRNVMKERCLEKEPACSRI 482
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 159/313 (50%), Gaps = 20/313 (6%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K F +LP + +WN +I+ K G + A +LF++MP RNVVS+ +I G + R
Sbjct: 66 KTFGDLPNKTTRSWNTLISFYSKTGFFDEAHNLFDKMPQRNVVSYNSLISGNLQWLRQVH 125
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
+A+ M E + I A+ A + G+ + Y +R ++ +
Sbjct: 126 GVAVIVGM------EWNVILNNALIDAYGKCGEPNLSFSVFCYMPERNVVSW-----TSM 174
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+ Y + + A ++F+D+ V KN VSWT++++GF +G EA + F++M + ++P
Sbjct: 175 VVAYTRACRLDEACRVFKDMPV--KNTVSWTALLTGFVRNGGCDEAFDVFKQMLEEGVRP 232
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMV--EECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
+ TF+SV++AC+ L+ G + +++ ++ L ++ LIDM + G ++ AE
Sbjct: 233 SAPTFVSVIDACAQEALIGRGKQVHGQIIRGDKSGNLFNVYVCNALIDMYAKCGDMKSAE 292
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+ P + +VV W TL+ + +G+ E V R+++E + ++V +L+G
Sbjct: 293 NLFEMAP--MRDVVTWNTLITGFAQNGHGEESLAVFRRMIEAK--VEPNHVTFLGVLSGC 348
Query: 305 WRYG-DAERLRRV 316
G D E L+ V
Sbjct: 349 NHAGLDNEGLQLV 361
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 40/214 (18%)
Query: 100 VRNCQLIHGYGEKRG--FNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 157
V+ +HG+ K F+AF ++N LID Y+KCGC SA K F D+ K SW
Sbjct: 26 VKLANAVHGHLIKTALFFDAF---LANGLIDAYSKCGCEESAHKTFGDLP--NKTTRSWN 80
Query: 158 SIISGFAMHGMGKEAVENFERM-QKVVLKPN-----------RVTFLSVL---------- 195
++IS ++ G EA F++M Q+ V+ N +V ++V+
Sbjct: 81 TLISFYSKTGFFDEAHNLFDKMPQRNVVSYNSLISGNLQWLRQVHGVAVIVGMEWNVILN 140
Query: 196 NAC--SHGGLVEEGLKF--FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
NA ++G E L F F M E ++ + ++ RA RL++A +V +P
Sbjct: 141 NALIDAYGKCGEPNLSFSVFCYMPER-----NVVSWTSMVVAYTRACRLDEACRVFKDMP 195
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
+ N V W LL +G + V +++LE
Sbjct: 196 --VKNTVSWTALLTGFVRNGGCDEAFDVFKQMLE 227
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 38/180 (21%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+K LF+ P R++VTWN +ITG + G E
Sbjct: 288 MKSAENLFEMAPMRDVVTWNTLITGFAQNGHGEE-------------------------- 321
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNG-DVRNCQLIHGYGEKRGFNAFHI 120
+LA+FRRM+ + EP+ +T L V G D QL+ + G
Sbjct: 322 -----SLAVFRRMIEAK-VEPNHVTFLGVLSGCNHAGLDNEGLQLVDLMERQYGVKPKAE 375
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS-WTSIISGFAMHG---MGKEAVENF 176
H + LID + + A+ L E + KN ++ W +++ +HG + ++A E
Sbjct: 376 HYA-LLIDLLGRRNRLMEAMSLIEKVPDGIKNHIAVWGAVLGACRVHGNLDLARKAAEKL 434
>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
Length = 612
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/361 (36%), Positives = 204/361 (56%), Gaps = 41/361 (11%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
KLFDE+PE++L++WN +I G VK G +E A+SLF +MP R+VV+W ++DGY ++
Sbjct: 240 AKKLFDEMPEKDLISWNSLIDGYVKHGRMEDAKSLFNKMPKRDVVTWATMVDGYAKLGFV 299
Query: 65 NGALALFRRM---------------VACEYTE----------------PSEITILAVFPA 93
+ A +LF RM V Y + P E T++ V A
Sbjct: 300 HQAKSLFDRMPLRDVVAYNSMITGYVQNRYHKEAIGIFNDMEKESHLSPDETTLVIVLSA 359
Query: 94 IWQNGDVRNCQLIHGYGEKRGFNAFHI--HVSNCLIDTYAKCGCIFSALKLFEDISVERK 151
I Q G + IH Y N F + + LIDTY+KCG I ++++FE+I E K
Sbjct: 360 IAQLGRLSKAVDIHLYIMD---NKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEI--ENK 414
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
++ W ++I G A+HG+G+ A + +++K +KP+ +TF+ VLNACSH GLV+EGL F
Sbjct: 415 SIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGLLCF 474
Query: 212 DKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ M + ++ P ++HYGC++D+L R+G +E A+ + +P E N V+WRT L ACS H
Sbjct: 475 ELMRRKHKIEPKLQHYGCMVDILSRSGSIELAKNLIEEMPIE-PNDVIWRTFLTACSNHK 533
Query: 272 NVEMGERVTRKILEMERGYG-GDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSL 330
E GE V + + ++ GY +VL+ N+ A + + R+R + ER K PG S
Sbjct: 534 EFETGELVAKHLF-LQGGYNPSSFVLLSNMYASFGMWKEVRRVRTTMKERKLRKIPGCSW 592
Query: 331 V 331
+
Sbjct: 593 I 593
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 144/286 (50%), Gaps = 22/286 (7%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDGYT-RMNR 63
++FD +P R+ V++N MI G VK G +E AR LF+ MP +N++SW +I GY R +
Sbjct: 177 QVFDRMPRRDSVSYNSMIDGYVKCGMIESARGLFDLMPKEKKNLISWNFMISGYAQRADG 236
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
N A LF M E I+ ++ ++G + + + + KR +
Sbjct: 237 VNVAKKLFDEM-----PEKDLISWNSLIDGYVKHGRMEDAKSLFNKMPKRDVVTW----- 286
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
++D YAK G + A LF+ + + +++V++ S+I+G+ + KEA+ F M+K
Sbjct: 287 ATMVDGYAKLGFVHQAKSLFDRMPL--RDVVAYNSMITGYVQNRYHKEAIGIFNDMEKES 344
Query: 184 -LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
L P+ T + VL+A + G + + + +++ L K LID + G +++
Sbjct: 345 HLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGG-KLGVALIDTYSKCGSIQK 403
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
+ +V I E ++ W ++G + HG +GE +L++E+
Sbjct: 404 SMRVFEEI--ENKSIDHWNAMIGGLAIHG---LGESAFDMLLQIEK 444
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 121/253 (47%), Gaps = 20/253 (7%)
Query: 34 EYARSLFEEMP-CRN-----VVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITI 87
E+AR +F E C N W +I ++ AL LF M+ + + ++
Sbjct: 66 EFARFVFHEYHVCSNGDFEDPFLWNAVIKSHSHGLDPRKALLLFCLMLETGVS-VDKFSL 124
Query: 88 LAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS 147
V A + G V+ IHG+ K G + +++ NCLI Y KCGC+ A ++F+
Sbjct: 125 SLVLKACSRLGFVKEGMQIHGFLRKTGIWS-DLYLQNCLIGLYIKCGCLGYARQVFD--R 181
Query: 148 VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH-GGLVEE 206
+ R++ VS+ S+I G+ GM + A F+ M K K N +++ +++ + V
Sbjct: 182 MPRRDSVSYNSMIDGYVKCGMIESARGLFDLMPKE--KKNLISWNFMISGYAQRADGVNV 239
Query: 207 GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
K FD+M E+ D+ + LID + GR+E A+ + + +P +VV W T++
Sbjct: 240 AKKLFDEMPEK-----DLISWNSLIDGYVKHGRMEDAKSLFNKMPKR--DVVTWATMVDG 292
Query: 267 CSFHGNVEMGERV 279
+ G V + +
Sbjct: 293 YAKLGFVHQAKSL 305
>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Brachypodium distachyon]
Length = 892
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 123/326 (37%), Positives = 195/326 (59%), Gaps = 7/326 (2%)
Query: 8 LFDE-LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
LFD+ LP+ ++V+ M+T G L+ ARSLF+ +P ++ V W +IDGYT+ R N
Sbjct: 443 LFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNE 502
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL LFRRM+ EP E+T++ V A+ Q G V + + +H Y + + V L
Sbjct: 503 ALRLFRRMLGSG-VEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTAL 561
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y KCG + A+ +F I K++V W ++I+G+AMHG ++A+E F + ++ L P
Sbjct: 562 IDMYCKCGSLGDAVDVFHGIG--DKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLWP 619
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+TF+ +LNACSH G+VEEG +FF M E + P I+HYGC++D+LGRAG +++A +
Sbjct: 620 TDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLLGRAGLIKEAFCL 679
Query: 247 ASGIPSEIT-NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
+ +IT + V+W +LL AC H N+ +G+++ ++ G Y+L+ NI A V
Sbjct: 680 VQSM--KITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLANSGMYILLSNIYAAVG 737
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
+G+ R+R ++ K PG S +
Sbjct: 738 NWGEVARVRSMMKASGIQKEPGCSSI 763
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 117/286 (40%), Gaps = 44/286 (15%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G L+ + +L + +T I ++ ALAL M+A + P+ T+ A
Sbjct: 337 GRLDLSLALLRRTRDPTAIFYTSAIHAHSSRGHRLPALALLSDMLA-QGLLPTAHTLSAS 395
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI---- 146
PA R +HGY K A +V+ L+ YA+ G +A LF+D+
Sbjct: 396 LPACRGLSPGRA---LHGYAFKLAL-AGDSYVATALLGMYARAGDATAARALFDDMLPDP 451
Query: 147 --------------------------SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+ K+ V W ++I G+ HG EA+ F RM
Sbjct: 452 HVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRML 511
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
++P+ VT + VL+A + G VE G + V ++ LIDM + G L
Sbjct: 512 GSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSL 571
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM 286
A V GI + ++VVW ++ + HG+ +RK LEM
Sbjct: 572 GDAVDVFHGIGDK--DIVVWNAMINGYAMHGD-------SRKALEM 608
>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
Length = 623
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 127/324 (39%), Positives = 195/324 (60%), Gaps = 4/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LF ++PER++ + N+M+TG ++ +L+ AR LF+EMP RNVV+WT +++GY + +S A
Sbjct: 251 LFMKMPERDIASCNIMVTGFIQNKDLKRARELFDEMPERNVVTWTTMMNGYLKGKQSELA 310
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LF M+ T P+++T L A + + +H K F F V + L+
Sbjct: 311 LGLFSGMLMAG-TRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQ-FDAFVESALM 368
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
+ YAKCG I A KLF D+S E K+L+SW II+ +A HG+G EA+ +E+MQ+ +PN
Sbjct: 369 NVYAKCGEIGLARKLF-DLSRE-KDLISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPN 426
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
VT++ +L+ACSH GLV+EGLK F+ MV + + +HY CLID+ RAGRL+ A+++
Sbjct: 427 DVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLI 486
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+ + + VW LLG C+ HGN +G R +L+ E G Y L+ NI A ++
Sbjct: 487 HYLKIKPASGSVWSALLGGCNAHGNESIGNLAARNLLQAEPDNAGTYTLLSNIYASAGKW 546
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
+A +R ++ R K PG S +
Sbjct: 547 KEAAEIRSEMNNRGLKKQPGCSWI 570
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 131/268 (48%), Gaps = 15/268 (5%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
D LFD +P R+ +WN+++ LV+ G ++ AR LF MP R+V++WT ++DG R +
Sbjct: 154 DACALFDRMPVRDAGSWNILLATLVRSGSVDKARELFGRMPERDVMAWTTMVDGVARSGK 213
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
+ A LF M E + ++ A+ +G RN ++ I
Sbjct: 214 VDEARVLFDSM-----PERNVVSWNAMI-----SGYTRNHRIDEALDLFMKMPERDIASC 263
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N ++ + + + A +LF+++ +N+V+WT++++G+ + A+ F M
Sbjct: 264 NIMVTGFIQNKDLKRARELFDEMP--ERNVVTWTTMMNGYLKGKQSELALGLFSGMLMAG 321
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
+PN+VTFL L+ACS + EG K +M+ + D L+++ + G + A
Sbjct: 322 TRPNQVTFLGALDACSDLAALCEG-KQVHQMICKTTFQFDAFVESALMNVYAKCGEIGLA 380
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHG 271
K+ S +++ W ++ A + HG
Sbjct: 381 RKLFD--LSREKDLISWNGIIAAYAHHG 406
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 127/265 (47%), Gaps = 30/265 (11%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC-RNVVSWTGIIDGYTRMN 62
D KLFD P+ ++V+W +++ + G L AR LF+ RNVV+WT ++ GY R
Sbjct: 60 DARKLFDGTPDWDVVSWTALVSAYARRGMLRDARELFDRPDARRNVVTWTALLSGYARAR 119
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV 122
+ A ALF+RM + S T+L + A + GD C L F+ +
Sbjct: 120 LVDEAEALFQRM--PQRNVVSWNTMLEAYAAAGRVGDA--CAL---------FDRMPVRD 166
Query: 123 S---NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+ N L+ T + G + A +LF + +++++WT+++ G A G EA F+ M
Sbjct: 167 AGSWNILLATLVRSGSVDKARELFG--RMPERDVMAWTTMVDGVARSGKVDEARVLFDSM 224
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+ N V++ ++++ + ++E L F KM E DI ++ +
Sbjct: 225 P----ERNVVSWNAMISGYTRNHRIDEALDLFMKMPER-----DIASCNIMVTGFIQNKD 275
Query: 240 LEQAEKVASGIPSEITNVVVWRTLL 264
L++A ++ +P NVV W T++
Sbjct: 276 LKRARELFDEMPER--NVVTWTTMM 298
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 15/181 (8%)
Query: 1 FLKDGSKLFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGY 58
L+D +LFD P+ RN+VTW +++G + ++ A +LF+ MP RNVVSW +++ Y
Sbjct: 88 MLRDARELFDR-PDARRNVVTWTALLSGYARARLVDEAEALFQRMPQRNVVSWNTMLEAY 146
Query: 59 TRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF 118
R A ALF RM + IL + ++G V + + G +R A+
Sbjct: 147 AAAGRVGDACALFDRM---PVRDAGSWNIL--LATLVRSGSVDKARELFGRMPERDVMAW 201
Query: 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER 178
++D A+ G + A LF+ S+ +N+VSW ++ISG+ + EA++ F +
Sbjct: 202 -----TTMVDGVARSGKVDEARVLFD--SMPERNVVSWNAMISGYTRNHRIDEALDLFMK 254
Query: 179 M 179
M
Sbjct: 255 M 255
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/314 (21%), Positives = 126/314 (40%), Gaps = 70/314 (22%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I L G + AR LF+ P +VVSWT ++ Y R A LF R
Sbjct: 46 NRLIAELAAAGRVWDARKLFDGTPDWDVVSWTALVSAYARRGMLRDARELFDR------- 98
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
D R ++ L+ YA+ + A
Sbjct: 99 -----------------PDARR----------------NVVTWTALLSGYARARLVDEAE 125
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV--TFLSVLNAC 198
LF+ + ++N+VSW +++ +A G +A F+RM P R ++ +L
Sbjct: 126 ALFQ--RMPQRNVVSWNTMLEAYAAAGRVGDACALFDRM------PVRDAGSWNILLATL 177
Query: 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
G V++ + F +M E D+ + ++D + R+G++++A + +P NVV
Sbjct: 178 VRSGSVDKARELFGRMPER-----DVMAWTTMVDGVARSGKVDEARVLFDSMPER--NVV 230
Query: 259 VWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL-AGVWRYGDAERLRRVV 317
W ++ + + ++ + K+ E + + NI+ G + D +R R +
Sbjct: 231 SWNAMISGYTRNHRIDEALDLFMKMPERD-------IASCNIMVTGFIQNKDLKRARELF 283
Query: 318 DERNALKFPGRSLV 331
DE P R++V
Sbjct: 284 DE-----MPERNVV 292
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 119/324 (36%), Positives = 191/324 (58%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FDE+ R++++W ++TG ++ AR F++MP R+ VSWT +IDGY RMNR
Sbjct: 297 VFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEV 356
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LFR M +P E T++++ A G + + Y +K + N LI
Sbjct: 357 LTLFRDMQMSN-VKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKN-DTFIGNALI 414
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y KCG + A K+F ++ ++K+ +WT++I G A +G G+EA+ F M + + P+
Sbjct: 415 DMYFKCGNVEKAKKIFNEM--QKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPD 472
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+T++ V+ AC+H GLV +G FF M + + P++ HYGC++D+LGRAG L++A +V
Sbjct: 473 EITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVI 532
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P + N +VW +LLGAC H NV++ E +ILE+E G YVL+ NI A ++
Sbjct: 533 MNMPVK-PNSIVWGSLLGACRVHKNVQLAEMAANEILELEPENGAVYVLLCNIYAACKKW 591
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
+ +R+++ ER K PG SL+
Sbjct: 592 KNLHNVRKMMMERGIKKIPGCSLM 615
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 118/236 (50%), Gaps = 7/236 (2%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G++ YAR +F+E+P +V W +I GY+R+N S ++L++ M+ +P T +
Sbjct: 83 GDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLV-HNIKPDGFTFPFL 141
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
++ ++ +++ + GF ++ V I ++ CG + A K+F+ +
Sbjct: 142 LKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFD--MGDG 199
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKV--VLKPNRVTFLSVLNACSHGGLVEEGL 208
+V+W ++SG+ +E+ F M+K + PN VT + +L+ACS + G
Sbjct: 200 WEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGK 259
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
++K ++E V P++ LIDM G ++ A V + + +V+ W +++
Sbjct: 260 CIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTR--DVISWTSIV 313
>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
Length = 983
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 118/330 (35%), Positives = 191/330 (57%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D L + T+N +IT + G + AR+LF+EMP RN VSW+ +++GY +
Sbjct: 262 LSDALVLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQA 321
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL LF RM A + P + ++ V A Q G + + +HGY + +
Sbjct: 322 GDGREALGLFARMQA-DGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIR-ITVF 379
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ L+D YAKCG + A+++F+ ++ KN+++WT++I G AMHG G EA+E F +M++
Sbjct: 380 LGTALVDMYAKCGEMQLAMEVFK--VMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMER 437
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ +KP+ + F+ L AC+H GLV++G + FD MV + + P I+HYGC++D+L R G L
Sbjct: 438 LGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLN 497
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++ +P + + ++W L+ C FH NVE+ E V + +E+E G YVL+ NI
Sbjct: 498 EAREMVEKMPMK-PDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIY 556
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ A +R ++ E+ K PG S V
Sbjct: 557 AASGRHASAREIRHLMREKGVDKTPGCSTV 586
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 201/331 (60%), Gaps = 5/331 (1%)
Query: 2 LKDGSKLFDELP-ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
+KD LF + E N+V WNVMI G V+ G+L +R LF+ MP ++VVSW +I G +
Sbjct: 174 MKDAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQ 233
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
A+ +F M + P+ +T+++V PA+ + G + + +H + EK +
Sbjct: 234 NGHFKEAIEMFHDMQLGD-VPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDV 292
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+ + LID Y+KCG I A+++FE I +KN ++W++II G AMHG ++A+++F RMQ
Sbjct: 293 -LGSALIDMYSKCGSIDKAVQVFEGIR-NKKNPITWSAIIGGLAMHGRARDALDHFWRMQ 350
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ + P+ V ++ VL+ACSH GLVEEG + MV +LP I+HYGC++D+LGRAG L
Sbjct: 351 QAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCL 410
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+AE++ +P + +V++ + LLGAC HGN+EMGER+ + ++ G YV + N+
Sbjct: 411 EEAEQLILNMPVKPDDVIL-KALLGACKMHGNIEMGERIAKILMGWYPHDSGSYVALSNM 469
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + ++R + E + K PG S +
Sbjct: 470 FASEGNWEGVVKVRLKMKELDIRKDPGCSWI 500
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 125/278 (44%), Gaps = 42/278 (15%)
Query: 32 ELEYARSLFEEMPCRNVVSWTGIIDGYTRMN-------RSNGALALFRRMVACEYTEPSE 84
E++YAR F ++ N SW II + S AL F M+ EP++
Sbjct: 64 EIKYARKFFSQIHHPNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNK 123
Query: 85 ITILAVFPAIWQNGDVRNCQLIHGYGEKRGF--------NAFHIHVS------------- 123
T V A + + + +HG+ K G N ++V
Sbjct: 124 FTFPCVLKACAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQ 183
Query: 124 ----------NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAV 173
N +ID Y + G + ++ +LF+ S+ K++VSW +ISG A +G KEA+
Sbjct: 184 TRLEGNVVLWNVMIDGYVRMGDLRASRELFD--SMPNKSVVSWNVMISGCAQNGHFKEAI 241
Query: 174 ENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDM 233
E F MQ + PN VT +SVL A S G +E G K+ E+ E+ D LIDM
Sbjct: 242 EMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELG-KWVHLFAEKNEIEIDDVLGSALIDM 300
Query: 234 LGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ G +++A +V GI ++ N + W ++G + HG
Sbjct: 301 YSKCGSIDKAVQVFEGIRNK-KNPITWSAIIGGLAMHG 337
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 102/263 (38%), Gaps = 48/263 (18%)
Query: 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL-IDTYAKCGCIFSALKLFEDISV 148
+FP I + R+ + IH + K G + + L T + I A K F I
Sbjct: 18 LFPQISRCKTTRHLKQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQI-- 75
Query: 149 ERKNLVSWTSIISGFA-------MHGMGKEAVENFERM-QKVVLKPNRVTFLSVLNACSH 200
N SW +II A H EA+ F M +++PN+ TF VL AC+
Sbjct: 76 HHPNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAK 135
Query: 201 GGLVEEGLKFF----------DKMVEE--------CEVLPD-------------IKHYGC 229
+EEG + D+ V C + D + +
Sbjct: 136 LARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNV 195
Query: 230 LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 289
+ID R G L + ++ +P++ +VV W ++ C+ +G+ + +M+ G
Sbjct: 196 MIDGYVRMGDLRASRELFDSMPNK--SVVSWNVMISGCAQNGHF---KEAIEMFHDMQLG 250
Query: 290 -YGGDYVLMYNILAGVWRYGDAE 311
+YV + ++L V R G E
Sbjct: 251 DVPPNYVTLVSVLPAVSRLGAIE 273
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 192/325 (59%), Gaps = 5/325 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFD + +R++V+W +I G K E AR +F+ MP +++ +W +I GY + R A
Sbjct: 400 LFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEA 459
Query: 68 LALFRRMVACEY-TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
LA+FR + + P ++T+L+ A Q G + + IHGY +K + +++ L
Sbjct: 460 LAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQ-LNRNLATSL 518
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y+K G + A+++F S+ K++ W+++I+G AMHG G+ A+E F MQ+ +KP
Sbjct: 519 IDMYSKSGDVEKAIEVFH--SIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKP 576
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N VTF ++L ACSH GLV+EG + FD+M V+P KHY C++D+LGRAG LE+A K
Sbjct: 577 NSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKF 636
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
G+P + VW LLGAC HGN+E+ E+ ++LE+E G G YVL+ N+ A
Sbjct: 637 IEGMPLA-PSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGD 695
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ LR+ + + K G S +
Sbjct: 696 WEGVSELRQQMRDSGLKKETGCSSI 720
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 135/285 (47%), Gaps = 22/285 (7%)
Query: 6 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 65
+KL D L T + L+YAR +F+++P N+ SW +I +
Sbjct: 166 NKLHDPYAASELFT----AAAFSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDPI 221
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLI----HGYGEKRGFNAFHIH 121
++ +F RM+ P++ T FP + + R C L+ HG K F +
Sbjct: 222 QSVLVFIRMLHDSPFGPNKFT----FPVLIKAVAERRCFLVGKAVHGMAIKTSFGD-DVF 276
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LI YA CG + A +FE I K++VSW S+++GF G +A++ FERM+
Sbjct: 277 VLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRN 336
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ PN VT +SV++AC+ + G K D ++ E++ ++ IDM + G +E
Sbjct: 337 EGVHPNAVTMVSVMSACAKTMNLTLGRKVCD-YIDRNEMMMNLNVCNATIDMFVKCGEVE 395
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGER-VTRKILE 285
A + + E +VV W T++ G +M E + R I +
Sbjct: 396 IARGLFDNM--EKRDVVSWTTIID-----GYAKMSEHGIARDIFD 433
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 147/313 (46%), Gaps = 23/313 (7%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
+++V+WN M+TG V+ G + A LFE M RN + + M+ + L
Sbjct: 306 KDIVSWNSMVTGFVQGGYPDKALDLFERM--RNEGVHPNAVTMVSVMSACAKTMNLTLGR 363
Query: 75 VACEYTEPSEITI-----LAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDT 129
C+Y + +E+ + A + G+V + + EKR ++ +ID
Sbjct: 364 KVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSW-----TTIIDG 418
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ--KVVLKPN 187
YAK A +F+ S+ RK++ +W +ISG+ G KEA+ F +Q K +P+
Sbjct: 419 YAKMSEHGIARDIFD--SMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPD 476
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+VT LS L+AC+ G ++ G ++ +++ + + LIDM ++G +E+A +V
Sbjct: 477 QVTLLSTLSACAQLGAMDIG-EWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVF 535
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM-ERGYGGDYVLMYNILAGVWR 306
I ++ +V VW ++ + HG GE L+M E + V N+L
Sbjct: 536 HSIGNK--DVFVWSAMIAGLAMHGR---GEAAIELFLDMQETQVKPNSVTFTNLLCACSH 590
Query: 307 YGDAERLRRVVDE 319
G + +R+ DE
Sbjct: 591 SGLVDEGKRLFDE 603
>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g34160-like [Vitis vinifera]
Length = 573
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 128/334 (38%), Positives = 205/334 (61%), Gaps = 9/334 (2%)
Query: 2 LKDGSKLFDELPER----NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDG 57
L + S++ L R +++ +I K G+L+ A+ +F+E+P R+V +W +I G
Sbjct: 116 LSETSQIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNALIAG 175
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
+ ++S+ ALALF RM A E + +EI++L A Q G +R + +H K +
Sbjct: 176 LAQGSKSSEALALFNRMRA-EGEKINEISVLGALAACSQLGALRAGEGVHACVRKMDLD- 233
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
++ V N +ID YAKCG ++F ++ K++V+W ++I FAMHG G A+E FE
Sbjct: 234 INVQVCNAVIDMYAKCGFADKGFRVFSTMTCG-KSVVTWNTMIMAFAMHGDGCRALELFE 292
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
M K ++ + VT+L+VL AC+H GLVEEG++ FD+MV V ++KHYG ++D+LGRA
Sbjct: 293 EMGKTQVEMDSVTYLAVLCACNHAGLVEEGVRLFDEMVGR-GVNRNVKHYGSVVDLLGRA 351
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297
GRL +A ++ + +P + +VV+W++LLGAC +GNVEM E +RK++EM GD+VL+
Sbjct: 352 GRLGEAYRIINSMPI-VPDVVLWQSLLGACKTYGNVEMAEMASRKLVEMGSNSCGDFVLL 410
Query: 298 YNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
N+ A R+ D R+R + R+ K PG S +
Sbjct: 411 SNVYAARERWEDVGRVREAMKSRDVRKVPGFSYI 444
>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
Length = 951
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 118/330 (35%), Positives = 191/330 (57%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D L + T+N +IT + G + AR+LF+EMP RN VSW+ +++GY +
Sbjct: 262 LSDALVLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQA 321
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL LF RM A + P + ++ V A Q G + + +HGY + +
Sbjct: 322 GDGREALGLFARMQA-DGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIR-ITVF 379
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ L+D YAKCG + A+++F+ ++ KN+++WT++I G AMHG G EA+E F +M++
Sbjct: 380 LGTALVDMYAKCGEMQLAMEVFK--VMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMER 437
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ +KP+ + F+ L AC+H GLV++G + FD MV + + P I+HYGC++D+L R G L
Sbjct: 438 LGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLN 497
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++ +P + + ++W L+ C FH NVE+ E V + +E+E G YVL+ NI
Sbjct: 498 EAREMVEKMPMK-PDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIY 556
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ A +R ++ E+ K PG S V
Sbjct: 557 AASGRHASAREIRHLMREKGVDKTPGCSTV 586
>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
Length = 648
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 120/330 (36%), Positives = 193/330 (58%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ + +F+ + R V+W MI G + G +E AR LF+EMP R+V W ++ GY +
Sbjct: 275 LELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQN 334
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ A+ALF M + +P+EIT++ + A Q G + +H Y ++ + +
Sbjct: 335 KQGKEAIALFHEMQKSK-VDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLH-LSVA 392
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ L+D YAKCG I A+ +F +I V+ N ++WTS+I G A HG EA+E F+RM
Sbjct: 393 LGTSLVDMYAKCGNIKKAICVFNEIPVQ--NALTWTSMICGLANHGHADEAIEYFQRMID 450
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ L+P+ +TF+ VL+AC H GLVE G +FF M + + +KHY C+ID+LGRAG L+
Sbjct: 451 LGLQPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLD 510
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AE++ + +P + + VVW L AC HGN+ +GE+ K++E++ G YVL+ N+
Sbjct: 511 EAEQLVNAMPMD-PDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMY 569
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A A+++R ++ K PG S +
Sbjct: 570 AEANMRKKADKVRVMMRHLGVEKVPGCSCI 599
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 148/317 (46%), Gaps = 40/317 (12%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVA-CEYTEPSEITILA 89
G + +AR LF+E P R+VVSW +I GY R AL LF R+ P E+T++
Sbjct: 170 GPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIG 229
Query: 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE 149
Q GD+ + +H + + +G + + N ++D Y KCG + A +FE IS
Sbjct: 230 AVSGCAQMGDLELGKRLHEFVDNKGVRCT-VRLMNAVMDMYVKCGSLELANSVFERIS-- 286
Query: 150 RKNLVSWTSIISGFAMHGM-------------------------------GKEAVENFER 178
+ VSWT++I G A GM GKEA+ F
Sbjct: 287 NRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHE 346
Query: 179 MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
MQK + PN +T +++L+ACS G +E G+ + ++ ++ + L+DM + G
Sbjct: 347 MQKSKVDPNEITMVNLLSACSQLGALEMGM-WVHHYIDRHKLHLSVALGTSLVDMYAKCG 405
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMY 298
+++A V + IP + N + W +++ + HG+ + ++++++ G D +
Sbjct: 406 NIKKAICVFNEIP--VQNALTWTSMICGLANHGHADEAIEYFQRMIDL--GLQPDEITFI 461
Query: 299 NILAGVWRYGDAERLRR 315
+L+ G E R+
Sbjct: 462 GVLSACCHAGLVEAGRQ 478
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 124/322 (38%), Positives = 200/322 (62%), Gaps = 9/322 (2%)
Query: 14 ERNLVTWNVMITGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALA 69
E+ L +IT LV K G+++ AR LF++M R+VV+W+ +I GY++ +R AL
Sbjct: 253 EKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALD 312
Query: 70 LFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDT 129
LF M +P+EIT++++ + G + + +H + +K+ + + L+D
Sbjct: 313 LFHEMQKAN-IDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMK-LTVTLGTALMDF 370
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
YAKCG + S++++F + V KN++SWT +I G A +G GK+A+E F M + ++PN V
Sbjct: 371 YAKCGSVESSIEVFGKMPV--KNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDV 428
Query: 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
TF+ VL+ACSH GLV+EG F M + + P I+HYGC++D+LGRAG +E+A +
Sbjct: 429 TFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKN 488
Query: 250 IPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGD 309
+P + N V+WRTLL +C H NVE+GE ++++ +E + GDY+L+ NI A V R+ D
Sbjct: 489 MPIQ-PNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWED 547
Query: 310 AERLRRVVDERNALKFPGRSLV 331
A ++R + E+ K PG SL+
Sbjct: 548 ALKVRGEMKEKGIKKTPGCSLI 569
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 139/252 (55%), Gaps = 7/252 (2%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I GE+E AR +F+EM RNV +W + GYT+ + LF M+ +
Sbjct: 163 NTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELD-I 221
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
E+T+++V A + D+ + I+ Y E++G +++ L+D YAKCG + +A
Sbjct: 222 RFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITS-LVDMYAKCGQVDTAR 280
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
+LF+ + +R+++V+W+++ISG++ +EA++ F MQK + PN +T +S+L++C+
Sbjct: 281 RLFDQM--DRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAV 338
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
G +E G K+ +++ + + L+D + G +E + +V +P + NV+ W
Sbjct: 339 LGALETG-KWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMP--VKNVLSW 395
Query: 261 RTLLGACSFHGN 272
L+ + +G
Sbjct: 396 TVLIQGLASNGQ 407
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 118/236 (50%), Gaps = 7/236 (2%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
++YA S+F ++ + ++ +I G+T + A+ LF+ M +P E T +
Sbjct: 74 MDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHE-NSVQPDEFTFPCILK 132
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
+ + + IH K GF + H V N LI YA CG + A ++F+++S +N
Sbjct: 133 VCSRLQALSEGEQIHALIMKCGFGS-HGFVKNTLIHMYANCGEVEVARRVFDEMS--ERN 189
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
+ +W S+ +G+ G +E V+ F M ++ ++ + VT +SVL AC +E G ++ +
Sbjct: 190 VRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELG-EWIN 248
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
+ VEE + + L+DM + G+++ A ++ + +VV W ++ S
Sbjct: 249 RYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRR--DVVAWSAMISGYS 302
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 107/255 (41%), Gaps = 29/255 (11%)
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH-----------VSNCLIDTY 130
P+ T +++FP + + C+ I R N H H V+ L+++
Sbjct: 13 PTAKTSISLFPENPKTLILEQCKTI------RDLNEIHAHLIKTRLLLKPKVAENLLESA 66
Query: 131 AKC--GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR 188
A + A+ +F I + + ++ +I GF + EA+ F+ M + ++P+
Sbjct: 67 AILLPTSMDYAVSIFRQI--DEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDE 124
Query: 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
TF +L CS + EG + ++ +C LI M G +E A +V
Sbjct: 125 FTFPCILKVCSRLQALSEGEQIH-ALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFD 183
Query: 249 GIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
+ NV W ++ + GN E ++ ++LE++ + D V + ++L R
Sbjct: 184 EMSER--NVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRF--DEVTLVSVLTACGRLA 239
Query: 309 DAER---LRRVVDER 320
D E + R V+E+
Sbjct: 240 DLELGEWINRYVEEK 254
>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 129/327 (39%), Positives = 202/327 (61%), Gaps = 21/327 (6%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDGYTRMNRS 64
+LF+++PERN V+W+ M+ G K G++E AR +F++MP +NVV+WT II GY
Sbjct: 237 ELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLL 296
Query: 65 NGALALFRRMVAC--EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR--GFNAFHI 120
A L +MVA ++ + I+ILA A ++G + IH ++ G NA+
Sbjct: 297 KEADRLVDQMVASGLKFDAAAVISILA---ACTESGLLSLGMRIHSILKRSNLGSNAY-- 351
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V N L+D YAKCG + A +F DI +K+LVSW +++ G +HG GKEA+E F RM+
Sbjct: 352 -VLNALLDMYAKCGNLKKAFDVFNDIP--KKDLVSWNTMLHGLGVHGHGKEAIELFSRMR 408
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ ++P++VTF++VL +C+H GL++EG+ +F M + +++P ++HYGCL+D+LGR GRL
Sbjct: 409 REGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRL 468
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
++A KV +P E NVV+W LLGAC H V++ + V +++++ G+Y L+ NI
Sbjct: 469 KEAIKVVQTMPME-PNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNI 527
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPG 327
Y AE V D R+ +K G
Sbjct: 528 ------YAAAEDWEGVADIRSKMKSMG 548
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 143/285 (50%), Gaps = 48/285 (16%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D KLF+++ ER+ V+WN M+ GLVK GEL AR LF+EMP R+++SW ++DGY R
Sbjct: 170 VRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARC 229
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ A LF +M P T+ W
Sbjct: 230 REMSKAFELFEKM-------PERNTV------SW-------------------------- 250
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ ++ Y+K G + A +F+ + + KN+V+WT II+G+A G+ KEA ++M
Sbjct: 251 --STMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVA 308
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
LK + +S+L AC+ GL+ G++ +++ + + L+DM + G L+
Sbjct: 309 SGLKFDAAAVISILAACTESGLLSLGMRIH-SILKRSNLGSNAYVLNALLDMYAKCGNLK 367
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGN----VEMGERVTRK 282
+A V + IP + ++V W T+L HG+ +E+ R+ R+
Sbjct: 368 KAFDVFNDIPKK--DLVSWNTMLHGLGVHGHGKEAIELFSRMRRE 410
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 102/207 (49%), Gaps = 16/207 (7%)
Query: 104 QLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG--CIFSALKLFEDISVERKNLVSWTSIIS 161
+++H + EK G ++ I+V N LID Y++CG + A+KLFE +S ++ VSW S++
Sbjct: 137 KMMHNHIEKLGLSS-DIYVPNALIDCYSRCGGLGVRDAMKLFEKMS--ERDTVSWNSMLG 193
Query: 162 GFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVL 221
G G ++A F+ M + L +++ ++L+ + + + + F+KM E V
Sbjct: 194 GLVKAGELRDARRLFDEMPQRDL----ISWNTMLDGYARCREMSKAFELFEKMPERNTV- 248
Query: 222 PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTR 281
+ ++ +AG +E A + +P NVV W ++ + G ++ +R+
Sbjct: 249 ----SWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVD 304
Query: 282 KILEMERGYGGDYVLMYNILAGVWRYG 308
+++ G D + +ILA G
Sbjct: 305 QMV--ASGLKFDAAAVISILAACTESG 329
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 9/167 (5%)
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+H++ LI + C A+++F V+ N+ S+I A + +A F M
Sbjct: 51 LHIAPKLISALSLCRQTNLAVRVFN--QVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEM 108
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
Q+ L + T+ +L ACS G +K +E+ + DI LID R G
Sbjct: 109 QRFGLFADNFTYPFLLKACS-GQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGG 167
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGE-RVTRKILE 285
L + + + V W ++LG G V+ GE R R++ +
Sbjct: 168 LGVRDAMKLFEKMSERDTVSWNSMLG-----GLVKAGELRDARRLFD 209
>gi|357441857|ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480254|gb|AES61457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 490
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 117/328 (35%), Positives = 196/328 (59%), Gaps = 4/328 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D +K+FDE+ R +V WN+MI G K G+LE LF+ M R+VVSW +I +
Sbjct: 159 MEDANKVFDEMLHREVVVWNIMINGFCKMGDLEIGLKLFKRMGQRSVVSWNLMISCLAQR 218
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ A +FR M+ + EP + T++ V P + GDV + IH Y + +G I
Sbjct: 219 KKDGEAFGIFREMLEQGF-EPDDATLVTVLPVCARLGDVDAGEWIHSYADGKGLLRKVIS 277
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N L+D Y KCG + +A K+F +++ +KN+VSW ++ISG ++G G+ VE FE+M +
Sbjct: 278 VGNSLVDFYCKCGNLEAAWKVFNEMT--KKNVVSWNAMISGLGLNGKGELGVELFEKMAR 335
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ P+ TF+ VL C+H G V++G + FD M + ++ P ++HYGC++D+LGR G ++
Sbjct: 336 KGVTPSDSTFVGVLACCAHAGFVDKGREIFDSMTVKFKLSPKLEHYGCVVDLLGRCGHVK 395
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + +P + N +W LL AC HG+ E+ E ++++ +E G G+YVL+ N+
Sbjct: 396 EAYDLIRNMPL-MPNAALWGALLSACRTHGDREVAEIAAKELVRLEPGNSGNYVLLSNVY 454
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRS 329
A ++ + E++R ++ K PG+S
Sbjct: 455 AEERKWNEVEKVRVLMQGVGIKKNPGQS 482
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/317 (21%), Positives = 123/317 (38%), Gaps = 36/317 (11%)
Query: 32 ELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVF 91
++ YA ++F N++ + II ++ + + F M P T +
Sbjct: 56 QIPYATTIFNHTHHPNILLFNSIIKAHSSFPPFHQSFHFFNLMKMTHNILPDNFTFPPLL 115
Query: 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI----- 146
A D Q +H + GF H V L++ Y+ CG + A K+F+++
Sbjct: 116 KATSYLRDYDLGQCLHAHVTALGFYR-HSPVEIGLLEVYSNCGKMEDANKVFDEMLHREV 174
Query: 147 ------------------------SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
+ ++++VSW +IS A EA F M +
Sbjct: 175 VVWNIMINGFCKMGDLEIGLKLFKRMGQRSVVSWNLMISCLAQRKKDGEAFGIFREMLEQ 234
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG-CLIDMLGRAGRLE 241
+P+ T ++VL C+ G V+ G ++ + +L + G L+D + G LE
Sbjct: 235 GFEPDDATLVTVLPVCARLGDVDAG-EWIHSYADGKGLLRKVISVGNSLVDFYCKCGNLE 293
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A KV + + + NVV W ++ +G E+G + K+ +G +L
Sbjct: 294 AAWKVFNEMTKK--NVVSWNAMISGLGLNGKGELGVELFEKM--ARKGVTPSDSTFVGVL 349
Query: 302 AGVWRYGDAERLRRVVD 318
A G ++ R + D
Sbjct: 350 ACCAHAGFVDKGREIFD 366
>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 658
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 199/330 (60%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++ +F ++PE+ +V+W MI+G G+L+ A ++F MP +NVVSW +I GY
Sbjct: 219 VRAAQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHN 278
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ + AL +F M+ P + T++++ A G + + + I+ Y +K + I
Sbjct: 279 HEFDQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLH-LSIP 337
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N LID +AKCG + +A ++F +S ++ +++WT+++SG A++G +EA+ F++M
Sbjct: 338 LGNALIDMFAKCGDVENAKEVFHHMS--KRCIITWTTMVSGLAVNGKCREAINLFDKMCL 395
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KP+ V F++VL+AC+HGGLVEEG + FD+MV+E + P I+HYGC++D+LGRAG+LE
Sbjct: 396 EGTKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLE 455
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + + + + N V+W TLL C HGN ++ + VT KI++ E L+ N+
Sbjct: 456 EAVRFTARMHLK-PNAVIWATLLFCCKIHGNGDLLKSVTEKIMDQEPSNPSYLTLVSNLS 514
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ D R + ++ K PG S +
Sbjct: 515 ASFGRWEDVLSFRVAMRQQRMEKVPGCSSI 544
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 190/311 (61%), Gaps = 5/311 (1%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ +K G+ +AR +F+EMP +NVVSW +I G + + +L +FR+M
Sbjct: 266 NALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLG-V 324
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+P ++T++AV + G + + +H Y ++ A + N L+D YAKCG I A
Sbjct: 325 KPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGF-IGNALVDMYAKCGSIDQAC 383
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
+F+ ++ RK++ S+T++I G AMHG G +A++ F M K+ ++P+ VTF+ VL ACSH
Sbjct: 384 WVFQ--AMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSH 441
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
GLVEEG K+F+ M + P ++HYGC++D+LGRAG + +AE+ +P E + V
Sbjct: 442 VGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIE-PDAFVL 500
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320
LLGAC HG VE+GE V +KI ++E G YVLM NI + R+ DA +LR+ + ER
Sbjct: 501 GALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKER 560
Query: 321 NALKFPGRSLV 331
N K PG S +
Sbjct: 561 NLEKTPGCSSI 571
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 152/323 (47%), Gaps = 41/323 (12%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++ K+FD P+R+LV+W MI G VK G LF EM N+ + DG
Sbjct: 176 IRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQA-----DG---- 226
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+T++ V + + GD+R + +H Y + +
Sbjct: 227 -----------------------MTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVF 263
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N L+D Y KCG A K+F+++ V KN+VSW S+ISG A G KE++ F +MQ+
Sbjct: 264 VGNALVDMYLKCGDANFARKVFQEMPV--KNVVSWNSMISGLAQKGQFKESLYMFRKMQR 321
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ +KP+ VT ++VLN+C++ G++E G K+ ++ ++ D L+DM + G ++
Sbjct: 322 LGVKPDDVTLVAVLNSCANLGVLELG-KWVHAYLDRNQIRADGFIGNALVDMYAKCGSID 380
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER-GYGGDYVLMYNI 300
QA V + + +V + ++ + HG G + EM + G D V +
Sbjct: 381 QACWVFQAMNRK--DVYSYTAMIVGLAMHGQ---GGKALDLFSEMPKMGIEPDEVTFVGV 435
Query: 301 LAGVWRYGDAERLRRVVDERNAL 323
L G E R+ ++ + +
Sbjct: 436 LTACSHVGLVEEGRKYFEDMSTI 458
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 133/278 (47%), Gaps = 9/278 (3%)
Query: 35 YARSLFEEMPCRNVVSWTGIIDGY-TRMNRSNGALALFRRMVACEYTEPSEITILAVFPA 93
YA SL ++ N+ + II G T N S L ++++M++ + P TI V A
Sbjct: 76 YALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLS-KGIVPDNYTIPFVLKA 134
Query: 94 IWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 153
++ VR + +HG K G A ++VSN L+ YA C I SA K+F D S +R +L
Sbjct: 135 CAESRAVREGEEVHGQAIKMGL-ASDVYVSNTLMRMYAVCDVIRSARKVF-DTSPQR-DL 191
Query: 154 VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDK 213
VSWT++I G+ G +E V F M L+ + +T + VL++C+ G + G K
Sbjct: 192 VSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRY 251
Query: 214 MVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
++ V D+ L+DM + G A KV +P + NVV W +++ + G
Sbjct: 252 IIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMP--VKNVVSWNSMISGLAQKGQF 309
Query: 274 EMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
+ + RK+ + G D V + +L G E
Sbjct: 310 KESLYMFRKMQRL--GVKPDDVTLVAVLNSCANLGVLE 345
>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g34160-like [Cucumis sativus]
Length = 576
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 196/316 (62%), Gaps = 5/316 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
+++ ++ K G+L+ A+ LF+EMP ++ SW +I G+ + +R A+ F+RM
Sbjct: 137 DVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMK 196
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
P+ +T+ A Q G ++ + +H Y + ++ ++ V N +ID YAKCG
Sbjct: 197 VDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLDS-NVQVCNVVIDMYAKCGS 255
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ A +FE++ + K+L++W ++I FAMHG G +A++ FE++ + + P+ V++L+VL
Sbjct: 256 MDKAYWVFENMRCD-KSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVL 314
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
AC+H GLVE+GLK F+ M + + P+IKHYG ++D+LGRAGRL++A + S +P
Sbjct: 315 CACNHAGLVEDGLKLFNSMTQR-GLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLP--FP 371
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
N+V+W+TLLGAC +G+VEM E +RK++EM G +VL+ N+ A R+ D R+R
Sbjct: 372 NMVLWQTLLGACRTYGDVEMAELASRKLVEMGFISCGXFVLLSNVYAARQRWDDVGRVRD 431
Query: 316 VVDERNALKFPGRSLV 331
+ R+ K PG S +
Sbjct: 432 AMRRRDVKKTPGFSYI 447
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 124/261 (47%), Gaps = 27/261 (10%)
Query: 24 ITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVA------- 76
+ + +G+L YA +F +P + W +I G + A+ +R M A
Sbjct: 42 LCAISSFGDLSYALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRI 101
Query: 77 ----CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK 132
C + + LA AI +H + GFNA + + L+D YAK
Sbjct: 102 DALTCSFALKACARALARSEAIQ----------LHSQLLRFGFNA-DVLLQTTLLDAYAK 150
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ-KVVLKPNRVTF 191
G + A KLF+++ + ++ SW ++I+GFA +A+ F+RM+ L+PN VT
Sbjct: 151 IGDLDLAQKLFDEM--PQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTV 208
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
L ACS G ++EG +VEE ++ +++ +IDM + G +++A V +
Sbjct: 209 QGALLACSQLGALKEGESVHKYIVEE-KLDSNVQVCNVVIDMYAKCGSMDKAYWVFENMR 267
Query: 252 SEITNVVVWRTLLGACSFHGN 272
+ +++ W T++ A + HG+
Sbjct: 268 CD-KSLITWNTMIMAFAMHGD 287
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 118/330 (35%), Positives = 197/330 (59%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ +F+ + ++ +V+W MI G ++G ++ AR +F+EMP R+V W ++ GY +
Sbjct: 273 LERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQC 332
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R AL LF M EP +IT++ + A Q G + +H Y ++R + +
Sbjct: 333 KRGKEALRLFHDMQEA-MVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRV-SLSVM 390
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ L+D Y+KCG I A+++F++I KN ++WT++ISG A HG A++ F+RM +
Sbjct: 391 LGTNLVDMYSKCGNIEKAIRVFKEIP--EKNALTWTAMISGLANHGHADVAIKYFQRMIE 448
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ L+P+ +TF+ VL+AC H GLV+EG +FF MV + + +KHY C++D+LGRAG L+
Sbjct: 449 LGLQPDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLD 508
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AE + + +P E + VVW L AC HGN+ +GE+ K++E++ G G YVL+ N+
Sbjct: 509 EAEHLVNTMPME-PDAVVWGALFFACRMHGNITLGEKAAMKLVELDPGDSGIYVLLANMY 567
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A A+++R ++ K PG S +
Sbjct: 568 AEANMRKKADKVRVMMRHLGVEKVPGCSCI 597
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 150/322 (46%), Gaps = 45/322 (13%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N + L + AR LF+ R++VSW +I GY R AL +F RMV
Sbjct: 159 NAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAV 218
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P E+T++ V Q D+ + +HGY E G + + N ++D Y KCG + A
Sbjct: 219 TPDEVTMIGVVSGSAQLRDLELGRRLHGYVESHGVRCT-VRLMNVVMDMYIKCGDLERAK 277
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGM-------------------------------G 169
+FE I ++K +VSWT++I G+A G+ G
Sbjct: 278 SVFEGI--DKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRG 335
Query: 170 KEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL---KFFDKMVEECEVLPDIKH 226
KEA+ F MQ+ +++P+ +T +++L+ACS G +E G+ + D+ V+
Sbjct: 336 KEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTN- 394
Query: 227 YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM 286
L+DM + G +E+A +V IP + N + W ++ + HG+ ++ + ++++E+
Sbjct: 395 ---LVDMYSKCGNIEKAIRVFKEIPEK--NALTWTAMISGLANHGHADVAIKYFQRMIEL 449
Query: 287 ERGYGGDYVLMYNILAGVWRYG 308
G D + +L+ G
Sbjct: 450 --GLQPDEITFIGVLSACCHAG 469
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 189/309 (61%), Gaps = 5/309 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K++D L ++L+ M++G K G ++ AR +F++M R++V W+ +I GY ++
Sbjct: 278 KIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQE 337
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL LF M+ + + P +IT+L+V A G + IH Y ++ GF + V+N L
Sbjct: 338 ALKLFDEMLQ-KRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRA-LSVNNAL 395
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YAKCG + A ++FE++ RKN++SW+S+I+ FAMHG A++ F RM++V ++P
Sbjct: 396 IDMYAKCGNLVKAREVFENMP--RKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEP 453
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N VTF+ VL AC H GLVEEG K F M+ E + P +HYGC++D+ RA L +A ++
Sbjct: 454 NGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIEL 513
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P NV++W +L+ AC HG E+GE +++LE+E + G V++ NI A R
Sbjct: 514 IETMPFA-PNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYAKEKR 572
Query: 307 YGDAERLRR 315
+ D +R+
Sbjct: 573 WNDVGLIRK 581
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 111/251 (44%), Gaps = 10/251 (3%)
Query: 39 LFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNG 98
+F ++P + ++ +R + + L+ + A + ++ A+ +
Sbjct: 76 VFSQIPNPHTHFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVS 135
Query: 99 DVRNCQLIHGYGEKRGF--NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 156
+ IHG K GF + F + LI YA C I A LF+ + + V+W
Sbjct: 136 AFNHGLEIHGLASKLGFVDDPF---IQTGLIAMYASCRRIMDARLLFDKMC--HPDAVAW 190
Query: 157 TSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVE 216
II G+ +G +A+ FE M+ +KP+ V +VL+AC H G + G + + V+
Sbjct: 191 NMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYG-RTIHEFVK 249
Query: 217 ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMG 276
+ D LI+M G ++ A K+ G+ S+ +++V +L + G V+
Sbjct: 250 DNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSK--HLIVSTAMLSGYAKLGMVKDA 307
Query: 277 ERVTRKILEME 287
+ +++E +
Sbjct: 308 RFIFDQMIERD 318
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 190/330 (57%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D +LFD + +++ +W M+ G K G+LE AR F++ P +N V W+ +I GY++
Sbjct: 409 LVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQN 468
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
N+ +L LF M+ P E T+++V A Q + IH Y +
Sbjct: 469 NKPKESLKLFHEMME-RGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVT 527
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N ++D YAKCG I +A ++F ++ +NL+SW ++I+G+A +G K+A+ F++M+
Sbjct: 528 LENAIVDMYAKCGSIDAATEVFS--TMPERNLISWNTMIAGYAANGRAKQAINVFDQMRN 585
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ +PN +TF+S+L ACSHGGL+ EG ++FD M + + P+ HY C++D+LGR G LE
Sbjct: 586 MGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLE 645
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A K+ + +P + W LL AC HGNVE+ +L ++ G YVL+ N
Sbjct: 646 EAYKLIANMPMQPCE-AAWGALLNACRMHGNVELARLSAHNLLRLDPEDSGIYVLLANTC 704
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ D R+R ++ ++ K PG SL+
Sbjct: 705 ANDRKWSDVRRVRSLMKDKGVKKIPGYSLI 734
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 152/317 (47%), Gaps = 37/317 (11%)
Query: 17 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVA 76
L+ N +I + G L+ AR +F+E ++VV+WT +IDGY + S A+ +F M+
Sbjct: 292 LLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLL 351
Query: 77 CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136
+ EP+E+T++AV A G++ + +H E++ + + N L+D Y KC C+
Sbjct: 352 -SHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRC-SLSLHNALLDMYVKCDCL 409
Query: 137 FSALKLFEDISVE-----------------------------RKNLVSWTSIISGFAMHG 167
A +LF+ ++ + RKN V W+++I+G++ +
Sbjct: 410 VDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNN 469
Query: 168 MGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP-DIKH 226
KE+++ F M + + P T +SVL+AC + G + + +++P +
Sbjct: 470 KPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLG-DWIHQYFVVGKIIPLSVTL 528
Query: 227 YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM 286
++DM + G ++ A +V S +P N++ W T++ + +G + V ++ M
Sbjct: 529 ENAIVDMYAKCGSIDAATEVFSTMPER--NLISWNTMIAGYAANGRAKQAINVFDQMRNM 586
Query: 287 ERGYGGDYVLMYNILAG 303
G+ + + ++L
Sbjct: 587 --GFEPNNITFVSLLTA 601
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 127/257 (49%), Gaps = 7/257 (2%)
Query: 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTE 81
+ L G+L YA ++F + N W +I GY + A + F M
Sbjct: 196 IAFCALAHSGDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEM 255
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
S + A+ A Q V + ++ K GF+ + V N LI YA+ G + +A +
Sbjct: 256 DSRSFVFAL-KACQQFETVFEGESVYCVVWKMGFDC-ELLVRNGLIHFYAERGLLKNARQ 313
Query: 142 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHG 201
+F++ S K++V+WT++I G+A H +EA+E FE M ++PN VT ++V++ACS
Sbjct: 314 VFDESS--DKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDM 371
Query: 202 GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWR 261
G +E G + +K VEE + + + L+DM + L A ++ + ++ +V W
Sbjct: 372 GNLEMGKRVHEK-VEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATK--DVYSWT 428
Query: 262 TLLGACSFHGNVEMGER 278
+++ + G++E R
Sbjct: 429 SMVNGYAKCGDLESARR 445
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 189/317 (59%), Gaps = 5/317 (1%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
RN +I K G+++ AR LF+EM R+VV+W+ +I GY + +R AL LF M
Sbjct: 255 RNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEM 314
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
P+E+T+++V + G + +H Y +K+ + + LID YAKCG
Sbjct: 315 QKGN-VYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMK-LTVTLGTQLIDFYAKCG 372
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
I ++++F+++S KN+ +WT++I G A +G GK A+E F M + +KPN VTF+ V
Sbjct: 373 YIDRSVEVFKEMSF--KNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGV 430
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L+ACSH LV++G F+ M + ++ P I+HYGC++D+LGRAG LE+A + +P
Sbjct: 431 LSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFP- 489
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLR 314
N VVWRTLL +C H N+EM E+ I +E + GDY+L+ N A V R DA R+R
Sbjct: 490 PNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVR 549
Query: 315 RVVDERNALKFPGRSLV 331
++ E+ K PG SL+
Sbjct: 550 SLIKEKEIKKIPGCSLI 566
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 143/265 (53%), Gaps = 7/265 (2%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I G++ AR +F+ MP R++V+W ++ GYT+ + + LFR+++
Sbjct: 160 NTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELR-I 218
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
E ++T+++V A + ++ +LI Y +G + ++ LID YAKCG + +A
Sbjct: 219 EFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNT-LTTSLIDMYAKCGQVDTAR 277
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
KLF+++ +++++V+W+++ISG+A KEA+ F MQK + PN VT +SVL +C+
Sbjct: 278 KLFDEM--DKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAM 335
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
G E G K+ +++ ++ + LID + G ++++ +V + NV W
Sbjct: 336 LGAYETG-KWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEM--SFKNVFTW 392
Query: 261 RTLLGACSFHGNVEMGERVTRKILE 285
L+ + +G +M +LE
Sbjct: 393 TALIQGLANNGEGKMALEFFSSMLE 417
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 115/237 (48%), Gaps = 15/237 (6%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
++YA S+F + ++ +I G + AL LF++M + + + T +V
Sbjct: 71 IDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHE-KSVQHDKFTFSSVLK 129
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
A + +R + +H K GF + V N LI YA CG I A +F+ + ++
Sbjct: 130 ACSRMKALREGEQVHALILKSGFKSNEF-VENTLIQMYANCGQIGVARHVFD--GMPERS 186
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
+V+W S++SG+ +G+ E V+ F ++ ++ ++ + VT +SVL AC +E G
Sbjct: 187 IVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIG----- 241
Query: 213 KMVEECEVLPDIKHYGC----LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
+++ E V ++ LIDM + G+++ A K+ + +VV W ++
Sbjct: 242 ELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKR--DVVAWSAMIS 296
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 21/180 (11%)
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198
AL +F I ++ ++ +I G A A+ F++M + ++ ++ TF SVL AC
Sbjct: 74 ALSIFNHI--DKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKAC 131
Query: 199 SHGGLVEEG-------LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
S + EG LK K E E LI M G++ A V G+P
Sbjct: 132 SRMKALREGEQVHALILKSGFKSNEFVE--------NTLIQMYANCGQIGVARHVFDGMP 183
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
++V W ++L + +G + ++ RKILE+ + D V M ++L R + E
Sbjct: 184 ER--SIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEF--DDVTMISVLMACGRLANLE 239
>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 194/311 (62%), Gaps = 5/311 (1%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I + G L AR LF+ MP R+V+SWT +I GY++ ++ + A+ LF+ M+A +
Sbjct: 164 NTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAK-V 222
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+P ++T+ +V A G + +H Y + G A I+V N LID Y KCG + AL
Sbjct: 223 KPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQA-DIYVGNSLIDMYCKCGMVEKAL 281
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
++F ++ K+ VSWTS+ISG A++G A++ F +M + ++P TF+ +L AC+H
Sbjct: 282 EVFH--RMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAH 339
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
GLV +GL++F+ M ++P +KHYGC++D+L R+G +++A + +P + +VVVW
Sbjct: 340 AGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPI-VPDVVVW 398
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320
R LL AC HGNV + E T+++LE++ G+YVL+ N AGV R+ DA ++R ++++
Sbjct: 399 RILLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDS 458
Query: 321 NALKFPGRSLV 331
+ K G S +
Sbjct: 459 DVQKPSGSSSI 469
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 134/258 (51%), Gaps = 7/258 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E L N +I G+L +A+ +F+ M R++VSW +I GY++ N+ L LF
Sbjct: 56 ESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDA 115
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M A + +T++ + A GD + Y ++ +++ N LID Y +
Sbjct: 116 MTAAN-IKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLE-IDVYLGNTLIDMYGRL 173
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + +A KLF+++ +++++SWTS+I+G++ +AV+ F+ M +KP++VT S
Sbjct: 174 GNLTAARKLFDNM--PKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVAS 231
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VL+AC+H G ++ G + V DI LIDM + G +E+A +V + +
Sbjct: 232 VLSACAHLGKLDVGWAVH-HYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDK 290
Query: 254 ITNVVVWRTLLGACSFHG 271
+ V W +++ + +G
Sbjct: 291 --DSVSWTSVISGLAVNG 306
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 88/166 (53%), Gaps = 12/166 (7%)
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 165
IH + K GF ++ + VSN LI YA CG + A K+F+ + ++LVSW ++I G++
Sbjct: 46 IHVHALKLGFESY-LFVSNALIHMYAMCGQLGFAQKMFD--GMLDRDLVSWNTLICGYSQ 102
Query: 166 HGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV---EECEVLP 222
+ KE + F+ M +K + VT + ++ ACSH G E F D MV +E +
Sbjct: 103 YNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWE----FADSMVKYIKENNLEI 158
Query: 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
D+ LIDM GR G L A K+ +P +V+ W +++ S
Sbjct: 159 DVYLGNTLIDMYGRLGNLTAARKLFDNMPKR--DVISWTSMITGYS 202
>gi|345505206|gb|AEN99827.1| chlororespiratory reduction 4, partial [Aethionema grandiflorum]
Length = 594
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 130/362 (35%), Positives = 204/362 (56%), Gaps = 37/362 (10%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L SKLF E+PE++L++WN MI G VK G +E A+ LF+ MP R+VV+W +IDGY ++
Sbjct: 217 LNTASKLFSEMPEKDLISWNSMINGCVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKL 276
Query: 62 NRSNGALALFRRM-----VAC--------------------------EYTEPSEITILAV 90
+ A +LF +M VAC + P E T++ V
Sbjct: 277 GFVHHAKSLFDQMHQRDVVACNSMMAGYVQNKYHMEALEIFNDMEKDSHLSPDETTLVIV 336
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
AI Q G + +H Y ++ F + LID ++KCG I A+ +FE I E
Sbjct: 337 LSAIAQLGRLSKAMSMHVYIVEKRF-PLGGKLGVALIDMHSKCGSIQHAISVFEGI--EN 393
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
K++ W ++I G A+HG+G+ A + ++++ ++P+ +TF+ VLNACSH GLV+EGL
Sbjct: 394 KSIDHWNAMIGGLAIHGLGELAFDMLMQIERCSIQPDXITFIGVLNACSHSGLVKEGLLC 453
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
F+ M + + P ++HYGCL+D+L R+G +E A+ + +P E N V+WR+ L ACS H
Sbjct: 454 FELMRRKHXIEPRLQHYGCLVDVLSRSGSIELAKHLIEDMPME-PNDVIWRSFLSACSTH 512
Query: 271 GNVEMGERVTRKILEMERGYG-GDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
E GE V + ++ ++ GY YVL+ N+ A + + D R+R ++ +R K PG S
Sbjct: 513 EEFETGELVAKHLI-LQAGYNPSSYVLLSNMYASLGMWKDVRRVRMMMKQRKLHKIPGCS 571
Query: 330 LV 331
+
Sbjct: 572 WI 573
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 145/326 (44%), Gaps = 55/326 (16%)
Query: 1 FLKDGSKLFDELPE----RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIID 56
FLK+G ++ L + +L N +I +K G L +AR +F+ MP R+ VS+ +ID
Sbjct: 116 FLKEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMID 175
Query: 57 GYTRMNRSNGALALFRRMVACEYTEPSEITIL----AVFPAIWQNGDVRNC--QLIHGYG 110
GY + A LF M P EI L ++ Q D N +L
Sbjct: 176 GYVKCGLMKSAHKLFDLM-------PREIKNLISWNSMISGYAQTADGLNTASKLFSEMP 228
Query: 111 EKRGFNAFHIHVSNC--------------------------LIDTYAKCGCIFSALKLFE 144
EK +++ ++ C +ID YAK G + A LF+
Sbjct: 229 EK-DLISWNSMINGCVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKSLFD 287
Query: 145 DISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK-VVLKPNRVTFLSVLNACSHGGL 203
+ ++++V+ S+++G+ + EA+E F M+K L P+ T + VL+A + G
Sbjct: 288 QM--HQRDVVACNSMMAGYVQNKYHMEALEIFNDMEKDSHLSPDETTLVIVLSAIAQLGR 345
Query: 204 VEEGLKFFDKMVEECEVLPDIKHYG-CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
+ + + +VE + P G LIDM + G ++ A V GI E ++ W
Sbjct: 346 LSKAMSMHVYIVE--KRFPLGGKLGVALIDMHSKCGSIQHAISVFEGI--ENKSIDHWNA 401
Query: 263 LLGACSFHGNVEMGERVTRKILEMER 288
++G + HG +GE ++++ER
Sbjct: 402 MIGGLAIHG---LGELAFDMLMQIER 424
>gi|357142899|ref|XP_003572730.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 497
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 115/324 (35%), Positives = 191/324 (58%), Gaps = 4/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
FD +PERN+V+WN M+ G L AR LF+ M RN +W+ ++ G + + A
Sbjct: 166 FFDAMPERNVVSWNAMLGAYASAGMLSEARKLFDGMHSRNAATWSSMVTGLVQSDHCEEA 225
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L +F MVA P+E +++V A Q + + +H Y ++ + + ++ ++
Sbjct: 226 LRVFSDMVA-RGVVPNESILVSVISACAQLRSLEHGVWVHAYVKRELHGSMSVILATAIV 284
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y KCGCI +A+++F + V +N+ SW S+I+G AM+G +A+ F +MQ ++PN
Sbjct: 285 DMYGKCGCIHNAIRVFAAMPV--RNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVQPN 342
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TF+ +L ACSH GLV+EG F++MV + + P +HYG ++D+LGRAG +++A
Sbjct: 343 DITFIGLLGACSHSGLVDEGRWLFNRMVNDFGIQPVPEHYGLMVDLLGRAGLVKEAVDFV 402
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P E + +W L GAC+ HG VE+GE + +K++E+E +G Y+L+ NI R+
Sbjct: 403 KNMPVE-PHPGLWGALAGACNIHGEVELGEEIAKKLIELEPRHGSRYILLSNIYGTSSRW 461
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
D +RR++ ER K G ++V
Sbjct: 462 EDMATVRRLIKERKVSKGTGNAVV 485
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 87/176 (49%), Gaps = 12/176 (6%)
Query: 103 CQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISG 162
L+H + + G +A +++ N + Y + SA +LF D S + ++V+WT++++G
Sbjct: 95 ASLLHSFAVRLG-HAGDVYIVNAAVSAYFTAADVASAERLFSDTSKDVADVVTWTTMVAG 153
Query: 163 FAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP 222
A G + A F+ M + N V++ ++L A + G++ E K FD M
Sbjct: 154 HARAGDVERARWFFDAMP----ERNVVSWNAMLGAYASAGMLSEARKLFDGMHSR----- 204
Query: 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE--ITNVVVWRTLLGACSFHGNVEMG 276
+ + ++ L ++ E+A +V S + + + N + +++ AC+ ++E G
Sbjct: 205 NAATWSSMVTGLVQSDHCEEALRVFSDMVARGVVPNESILVSVISACAQLRSLEHG 260
>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
Length = 914
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 126/372 (33%), Positives = 198/372 (53%), Gaps = 45/372 (12%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
D K+FDE+PER++V+WN + +V+ GEL AR LF+EMP ++ VSW I+DGYT+
Sbjct: 498 FSDARKVFDEMPERDVVSWNTAMAAMVREGELAGARKLFDEMPEKDTVSWNTILDGYTKA 557
Query: 62 NRSNGALALFRRM----------VACEYTEPSEI-------------------------- 85
A LF+RM + Y + ++
Sbjct: 558 GEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPGKNLVTWTIMMKEAS 617
Query: 86 ------TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSA 139
++++ A ++G + + IH Y KR HV N LID + KCGC+ A
Sbjct: 618 VELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGR-STHVCNALIDMFCKCGCVNRA 676
Query: 140 LKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS 199
+F+ +V+ K+ VSW SII GFAMHG G +A+E F +M++ P+ VT ++VL+AC+
Sbjct: 677 DYVFDTETVQ-KDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACT 735
Query: 200 HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVV 259
H G V+EG ++F M + ++P I+HYGC+ID+LGR G +++A + +P E N V+
Sbjct: 736 HMGFVDEGRRYFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWE-PNEVI 794
Query: 260 WRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319
W +LL AC H NVE E ++ +++ G+Y ++ NI A ++ D + R +
Sbjct: 795 WGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKG 854
Query: 320 RNALKFPGRSLV 331
+ K G S V
Sbjct: 855 TGSQKTAGSSWV 866
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 83/178 (46%), Gaps = 29/178 (16%)
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LID Y+K G A K+F+++ +++VSW + ++ G A + F+ M
Sbjct: 484 VGNALIDAYSKNGGFSDARKVFDEMP--ERDVVSWNTAMAAMVREGELAGARKLFDEMP- 540
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ + V++ ++L+ + G VE + F +M E ++ + ++ + G LE
Sbjct: 541 ---EKDTVSWNTILDGYTKAGEVEAAFELFQRMPER-----NVVSWSTMVSGYCKKGDLE 592
Query: 242 QAEKVASGIPSEITNVVVWR----------------TLLGACSFHGNVEMGERVTRKI 283
A + +P + N+V W ++L AC+ G++ +G+R+ R +
Sbjct: 593 MARVIFDKMPGK--NLVTWTIMMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYV 648
>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
[Vitis vinifera]
gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 122/318 (38%), Positives = 194/318 (61%), Gaps = 6/318 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
KLFDE+PER++V+W +MI G G L+ ARSLF+ MP +N+ SW +I GY + +
Sbjct: 206 KLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYRQNKQPYE 265
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL LF M + EP E+TI++V PAI G + +H + ++ + +V L
Sbjct: 266 ALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDR-ATNVGTAL 324
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YAKCG I + +F+++ K SW ++I+ FA++G KEA+ F M P
Sbjct: 325 IDMYAKCGEIVKSRGVFDNMP--EKETASWNALINAFAINGRAKEALGLFMEMNHKGFMP 382
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N +T + VL+AC+H GLVEEG ++F K +EE + P I+HYGC++D+LGRAG L++AEK+
Sbjct: 383 NEITMIGVLSACNHSGLVEEGKRWF-KAMEEFGLTPKIEHYGCMVDLLGRAGCLQEAEKL 441
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E N ++ + L AC + +V ERV ++ ++ME G+Y+++ N+ A R
Sbjct: 442 MESMPYE-ANGIILSSFLFACGYSKDVARAERVLKEAIKMEAWNDGNYIMLRNLYANEKR 500
Query: 307 YGDAERLRRVVDERNALK 324
+ +A+ ++ ++ RN +K
Sbjct: 501 WKEADEVKGLM-RRNGVK 517
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 141/302 (46%), Gaps = 20/302 (6%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
+L ++ K+G+++ AR LF+EM R+ VSWT +I GY R + A LF +M+
Sbjct: 122 DLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMI 181
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
E + A + GD+ + + + +R ++ I +I Y+ G
Sbjct: 182 -----EKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTI-----MIYGYSSNGN 231
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFLSV 194
+ SA LF+ ++ KNL SW ++ISG+ + EA++ F MQ L+P+ VT +SV
Sbjct: 232 LDSARSLFD--AMPEKNLFSWNAMISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSV 289
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L A + G ++ G + + V ++ LIDM + G + ++ V +P +
Sbjct: 290 LPAIADLGALDLG-GWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKE 348
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEM-ERGYGGDYVLMYNILAGVWRYGDAERL 313
T W L+ A + +G + +EM +G+ + + M +L+ G E
Sbjct: 349 T--ASWNALINAFAINGR---AKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEG 403
Query: 314 RR 315
+R
Sbjct: 404 KR 405
>gi|359486281|ref|XP_003633424.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g45350, chloroplastic-like [Vitis vinifera]
Length = 704
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 134/360 (37%), Positives = 202/360 (56%), Gaps = 34/360 (9%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
LK +LF+E+P+++L++WN MI G VK G++E LF MP R VVS +++G+ ++
Sbjct: 232 LKVAWELFEEMPKKDLISWNSMINGCVKCGKMENDHHLFNRMPKRXVVSXANMVNGHAKL 291
Query: 62 NRSNGALALFRRM-----VACE-----YTEPSEI--------------------TILAVF 91
+ A LF M ++C Y + + T+L
Sbjct: 292 GEIDIARGLFVEMPEMDVISCNAMMARYVQNGYLMESLKNFHDMLSKELFLDNATLLITL 351
Query: 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151
AI Q G +H Y E GF + + LIDTYAKCG I +AL +FEDI + K
Sbjct: 352 SAIAQLGHFDEGVALHCYIEDNGF-SLSEKLGVALIDTYAKCGSIDNALSVFEDI--DNK 408
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
++ W +I+SG A+HG+G+ A E F M+K+ +KPN +TF+ VLNAC+H GLV+EGL F
Sbjct: 409 SIDHWNAILSGLAIHGLGEVAFELFMEMEKLFVKPNDITFIGVLNACNHAGLVKEGLMCF 468
Query: 212 DKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ M +V P ++HY C++D+LG+AG +E+ +K + E N VVWRTLL AC H
Sbjct: 469 ELMKRVDKVEPKLQHYVCMVDILGQAGHVEETKKFVEKMSIE-PNDVVWRTLLSACRNHE 527
Query: 272 NVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
N +GE V + ++ ++ YVL+ NI AG + D R+R ++ +R+ K PG S +
Sbjct: 528 NFTIGEPVAKHLISVDSYNLSSYVLLSNIYAGFGIWNDVHRIRMMMKQRDLKKIPGCSQI 587
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 131/285 (45%), Gaps = 21/285 (7%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRN--VVSWTGIIDGYTRM-NR 63
+LFD + +++ V++N MI G VK G ++ A LF+ MP ++SW +I Y R R
Sbjct: 172 QLFDRMMKKDSVSFNSMIDGYVKHGMVKSAWELFDVMPMEQKILISWNSMISEYARSEER 231
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
A LF M + I+ ++ + G + N + KR + +
Sbjct: 232 LKVAWELFEEM-----PKKDLISWNSMINGCVKCGKMENDHHLFNRMPKRXV----VSXA 282
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N +++ +AK G I A LF + + +++S ++++ + +G E+++NF M
Sbjct: 283 N-MVNGHAKLGEIDIARGLF--VEMPEMDVISCNAMMARYVQNGYLMESLKNFHDMLSKE 339
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
L + T L L+A + G +EG+ + + L + K LID + G ++ A
Sbjct: 340 LFLDNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSE-KLGVALIDTYAKCGSIDNA 398
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
V I ++ ++ W +L + HG +GE +EME+
Sbjct: 399 LSVFEDIDNK--SIDHWNAILSGLAIHG---LGEVAFELFMEMEK 438
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 101/231 (43%), Gaps = 27/231 (11%)
Query: 33 LEYARSLF-------EEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEI 85
+E+AR LF + N W II ++ +F M+ +
Sbjct: 59 VEFARYLFMSRHFGRKYRKQDNSFIWNAIIKSFSHKEDPREVFVIFNLMLESGVC-VDKF 117
Query: 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFED 145
+ V A + G ++ IHG K + + + NCL+ Y +CGC+ +LF+
Sbjct: 118 SFSLVLKACSRLGLIKEGMQIHGLLGKMEIGS-DVFLQNCLMCLYLRCGCLGIVRQLFDR 176
Query: 146 ISVERKNLVSWTSIISGFAMHGMGKEAVENFERM---QKVVLKPNRVTFLSVLNACSHGG 202
+ +K+ VS+ S+I G+ HGM K A E F+ M QK+++ N + S
Sbjct: 177 MM--KKDSVSFNSMIDGYVKHGMVKSAWELFDVMPMEQKILISWNSMI--------SEYA 226
Query: 203 LVEEGLKFFDKMVEECEVLP--DIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
EE LK ++ EE +P D+ + +I+ + G++E + + +P
Sbjct: 227 RSEERLKVAWELFEE---MPKKDLISWNSMINGCVKCGKMENDHHLFNRMP 274
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 121/325 (37%), Positives = 194/325 (59%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LF+ L ++ +V+W MI G ++ LE AR+LF+ R+V+ WT ++ Y + N +
Sbjct: 283 QLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQ 342
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A LF +M P+++TI+++ G + + +H Y +K I ++ L
Sbjct: 343 AFNLFDQM-RTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCI-LNTAL 400
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+D YAKCG I +A +LF I +++ W +II+GFAMHG G+EA++ F M++ +KP
Sbjct: 401 VDMYAKCGDINAAGRLF--IEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKP 458
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N +TF+ +L+ACSH GLV EG K F+KMV ++P I+HYGC++D+LGRAG L++A ++
Sbjct: 459 NDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEM 518
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P + N +VW L+ AC H N ++GE ++LE+E G VLM NI A R
Sbjct: 519 IKSMPIK-PNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANR 577
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ DA +R+ + K PG S++
Sbjct: 578 WSDAAGVRKTMKTVGMKKEPGHSVI 602
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 140/296 (47%), Gaps = 42/296 (14%)
Query: 27 LVKWGE---LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPS 83
++ +GE +EYAR +F++M R+VVSW+ +I +R + AL L R M + PS
Sbjct: 166 MLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQ-VRPS 224
Query: 84 EITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV--SNCLIDTYAKCGCIFSALK 141
E+ ++++ ++R + +H Y R N H+ V + L+D YAKCG + A +
Sbjct: 225 EVAMVSMVNLFADTANMRMGKAMHAY-VIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQ 283
Query: 142 LFEDI-----------------------------SVERKNLVSWTSIISGFAMHGMGKEA 172
LF + S + ++++ WT+++S +A +A
Sbjct: 284 LFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQA 343
Query: 173 VENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLID 232
F++M+ ++P +VT +S+L+ C+ G ++ G K+ +++ V D L+D
Sbjct: 344 FNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLG-KWVHSYIDKERVEVDCILNTALVD 402
Query: 233 MLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
M + G + A ++ I + ++ +W ++ + HG GE EMER
Sbjct: 403 MYAKCGDINAAGRLF--IEAISRDICMWNAIITGFAMHG---YGEEALDIFAEMER 453
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 104/223 (46%), Gaps = 15/223 (6%)
Query: 50 SWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY 109
W +I YT+ N+ AL ++ ++ ++ E +V A Q + + IHG+
Sbjct: 91 QWNFVITSYTKRNQPRNALNVYAQLRKMDF-EVDNFMAPSVLKACGQVSWTQLGKEIHGF 149
Query: 110 GEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 169
K+G + + V N L+ Y +C C+ A +F+ + +ER ++VSW+++I + +
Sbjct: 150 VLKKGLDR-DVFVGNALMLMYGECACVEYARLVFDKM-MER-DVVSWSTMIRSLSRNKEF 206
Query: 170 KEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG- 228
A+E M + ++P+ V +S++N + + G ++ + +H G
Sbjct: 207 DMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNS----NNEHMGV 262
Query: 229 ----CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC 267
L+DM + G L A ++ +G+ + VV W ++ C
Sbjct: 263 PTTTALLDMYAKCGHLGLARQLFNGLTQK--TVVSWTAMIAGC 303
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 126/330 (38%), Positives = 187/330 (56%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ +LF+ +P +N+ +WN MITG + G++ AR+ F+ MP R+ +SW II GY +
Sbjct: 232 MDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQS 291
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL LF M + + T + + + + +HG K G + +
Sbjct: 292 GYGEEALHLFVEMKR-DGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLES-GCY 349
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N L+ Y KCG I A +FE I E K +VSW ++I+G+A HG GKEA+ FE M+K
Sbjct: 350 VGNALLVMYCKCGNIDDAYIVFEGI--EEKEVVSWNTMIAGYARHGFGKEALMLFESMKK 407
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ P+ VT + VL+ACSH GLV++G ++F M ++ + + KHY C+ID+LGRAGRL+
Sbjct: 408 TGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLD 467
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A+ + +P E + W LLGA HGN E+GE+ + I EME G YVL+ N+
Sbjct: 468 DAQNLMKNMPFE-PDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLY 526
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+GD R+R + +R K PG S V
Sbjct: 527 AASGRWGDVGRMRLRMRDRGVKKVPGYSWV 556
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 145/331 (43%), Gaps = 73/331 (22%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
++K+ ++FDE+P +N ++WN M+ V+ G +E AR LFE ++SW ++ GY +
Sbjct: 76 YVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVK 135
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQ---------------- 104
NR A +F RM E E++ + QNG++ Q
Sbjct: 136 RNRLVDARGIFDRM-----PERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTA 190
Query: 105 LIHGYGE-------KRGFNAFHIHVS---NCLIDTYAKCGCIFSALKLFE---------- 144
++ GY + +R F+ S N +I Y +C + A +LFE
Sbjct: 191 MVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSW 250
Query: 145 -----------DISVER--------KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
DI+ R ++ +SW +II+G+A G G+EA+ F M++ +
Sbjct: 251 NTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGER 310
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC-----LIDMLGRAGRL 240
NR TF S L+ C+ +E G + ++V+ GC L+ M + G +
Sbjct: 311 LNRSTFTSTLSTCAEIAALELGKQVHGRVVKAG------LESGCYVGNALLVMYCKCGNI 364
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ A V GI E VV W T++ + HG
Sbjct: 365 DDAYIVFEGI--EEKEVVSWNTMIAGYARHG 393
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 122/255 (47%), Gaps = 33/255 (12%)
Query: 24 ITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPS 83
+ G V++ L AR LF++MP R+VVSW ++ GY + A +F M C+ +
Sbjct: 37 LRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM-PCK----N 91
Query: 84 EITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA---FHIHVSNCLIDTYAKCGCIFSAL 140
I+ + A QNG + + +R F + + + NC++ Y K + A
Sbjct: 92 SISWNGMLAAYVQNGRIEDA--------RRLFESKADWELISWNCMMGGYVKRNRLVDAR 143
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR--VTFLSVLNAC 198
+F+ + ++ VSW ++ISG+A +G EA FE P R T+ ++++
Sbjct: 144 GIFDRMP--ERDEVSWNTMISGYAQNGELLEAQRLFEE------SPVRDVFTWTAMVSGY 195
Query: 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
G+++E + FD M E+ V + +I + R++QA ++ +P + NV
Sbjct: 196 VQNGMLDEARRVFDGMPEKNSV-----SWNAIIAGYVQCKRMDQARELFEAMPCQ--NVS 248
Query: 259 VWRTLLGACSFHGNV 273
W T++ + +G++
Sbjct: 249 SWNTMITGYAQNGDI 263
>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
Length = 543
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 195/331 (58%), Gaps = 5/331 (1%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
FL + ++F++ E ++V+WN MI GL K GE++ +R LF++MP +N +SW +I GY R
Sbjct: 174 FLSEARRIFNQEMEFDVVSWNSMILGLAKCGEIDESRKLFDKMPVKNPISWNSMIGGYVR 233
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
AL LF +M E +PSE T++++ A Q G +R IH Y +K I
Sbjct: 234 NGMFKEALKLFIKMQE-ERIQPSEFTMVSLLNASAQIGALRQGVWIHEYIKKNNLQLNAI 292
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V+ +ID Y KCG I +AL++FE I ++L SW S+I G A++G KEA+ F+ ++
Sbjct: 293 VVT-AIIDMYCKCGSIGNALQVFEKIPC--RSLSSWNSMIFGLAVNGCEKEAILVFKMLE 349
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
LKP+ ++F++VL AC+HG +V+EG++FF +M + P IKHY ++DM+ RAG L
Sbjct: 350 SSSLKPDCISFMAVLTACNHGAMVDEGMEFFSRMKNTYRIEPSIKHYNLMVDMISRAGFL 409
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+AE+ +P E + ++W LL AC +GN EM +R K+ E++ YVLM NI
Sbjct: 410 EEAEQFIKTMPIE-KDAIIWGCLLSACRIYGNTEMAKRAAEKVNELDPEETMGYVLMANI 468
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + A R + + K PG S +
Sbjct: 469 HAWGNNFVGAMEKRVAMRMKKVEKEPGGSFI 499
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 130/271 (47%), Gaps = 35/271 (12%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G ++YA +F +M N+ SW +I G+++ + AL LF M+ EP +T ++
Sbjct: 71 GNMDYAYLVFLQMQNPNLFSWNTVIRGFSQSSNPQIALYLFIDMLVSSQVEPQRLTYPSI 130
Query: 91 FPAIWQNGDVRNCQLIHG--------------------YGE-------KRGFNA---FHI 120
F A Q G + +HG Y +R FN F +
Sbjct: 131 FKAYSQLGLAHDGAQLHGRIIKLGLQFDPFIRNTILYMYATGGFLSEARRIFNQEMEFDV 190
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
N +I AKCG I + KLF+ + V KN +SW S+I G+ +GM KEA++ F +MQ
Sbjct: 191 VSWNSMILGLAKCGEIDESRKLFDKMPV--KNPISWNSMIGGYVRNGMFKEALKLFIKMQ 248
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ ++P+ T +S+LNA + G + +G+ + + +++ + + +IDM + G +
Sbjct: 249 EERIQPSEFTMVSLLNASAQIGALRQGV-WIHEYIKKNNLQLNAIVVTAIIDMYCKCGSI 307
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
A +V IP ++ W +++ + +G
Sbjct: 308 GNALQVFEKIPCR--SLSSWNSMIFGLAVNG 336
>gi|449447707|ref|XP_004141609.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
gi|449510706|ref|XP_004163739.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
Length = 563
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 128/337 (37%), Positives = 200/337 (59%), Gaps = 18/337 (5%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FDE+ ER +V+W MI+G + G + A LFE MP R+V +W +I G +
Sbjct: 200 QMFDEMLERTVVSWTAMISGYARLGNFDSAIELFESMPERDVPAWNALIAGCAQNGFFCE 259
Query: 67 ALALFRRMVACEY--------TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR--GFN 116
A+ LF+RMV +P++ T+ + A G + + IHGY K G +
Sbjct: 260 AIWLFKRMVLLALEGNNNDRENKPNKTTLGSALSACGHTGMLHLGKWIHGYVFKTYPGQD 319
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
+F +SN L+D Y KCG + A ++F+ I++ KNL SW S+I+ A+HG A++ F
Sbjct: 320 SF---ISNALLDMYGKCGNLKVARRVFDMITL--KNLTSWNSLINCLALHGHSGSAIDLF 374
Query: 177 ERMQKVV--LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDML 234
+ +KPN VTF+ VLNAC+HGGLVE+G +F+ M + ++ P I+H+GCLID+L
Sbjct: 375 AELIHCGDGVKPNEVTFVGVLNACTHGGLVEKGYSYFEMMRRDYDIEPQIEHFGCLIDLL 434
Query: 235 GRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY 294
GRAGR E+A +V G+ E + VVW +LL AC HG ++ E +K++EM+ GG
Sbjct: 435 GRAGRFEEAMEVVRGMNIE-PDEVVWGSLLNACKIHGRSDLAEYSVKKLIEMDPKNGGYR 493
Query: 295 VLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+++ NI A ++ + ++RR++ E+NA K PG S +
Sbjct: 494 IMLANIYAEFGKWDEVRKVRRLLKEKNAYKTPGCSWI 530
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 123/283 (43%), Gaps = 47/283 (16%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
+L YAR +F+ + NV +T +I Y A L+R MV P+ V
Sbjct: 90 ADLCYARYIFDNLTSPNVFLYTAMITAYASYPDPKAAFLLYRNMVRRGAIRPNNFIYPHV 149
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC-IFSALKLFEDISVE 149
+ +++H K GF + + V ++D+Y++ I SA ++F+++ +E
Sbjct: 150 LRSCPDVLGSNATKMVHTQVLKSGFGGYPV-VQTAIVDSYSRFSSDIGSARQMFDEM-LE 207
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERM----------------------------QK 181
R +VSWT++ISG+A G A+E FE M ++
Sbjct: 208 R-TVVSWTAMISGYARLGNFDSAIELFESMPERDVPAWNALIAGCAQNGFFCEAIWLFKR 266
Query: 182 VVL------------KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC 229
+VL KPN+ T S L+AC H G++ G K+ V + D
Sbjct: 267 MVLLALEGNNNDRENKPNKTTLGSALSACGHTGMLHLG-KWIHGYVFKTYPGQDSFISNA 325
Query: 230 LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
L+DM G+ G L+ A +V I + N+ W +L+ + HG+
Sbjct: 326 LLDMYGKCGNLKVARRVFDMI--TLKNLTSWNSLINCLALHGH 366
>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 607
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 194/332 (58%), Gaps = 6/332 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR-NVVSWTGIIDGYTR 60
L D ++F + + N+V+W +++G +WG ++ A +FE MPC+ N VSW +I + +
Sbjct: 151 LDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVK 210
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
NR A ALFRRM + E + A G + IH Y EK G
Sbjct: 211 GNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGI-VLDS 269
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
++ +ID Y KCGC+ A +F + V+R + SW +I GFAMHG G++A+ F+ M+
Sbjct: 270 KLATTIIDMYCKCGCLDKAFHVFCGLKVKR--VSSWNCMIGGFAMHGKGEDAIRLFKEME 327
Query: 181 K-VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+ ++ P+ +TF++VL AC+H GLVEEG +F MV+ + P +HYGC++D+L RAGR
Sbjct: 328 EEAMVAPDSITFVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGR 387
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
LE+A+KV +P + V LLGAC HGN+E+GE V +++E++ G YV++ N
Sbjct: 388 LEEAKKVIDEMPMS-PDAAVLGALLGACRIHGNLELGEEVGNRVIELDPENSGRYVILGN 446
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ A ++ +R+++D+R K PG S++
Sbjct: 447 MYASCGKWEQVAGVRKLMDDRGVKKEPGFSMI 478
>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
Length = 583
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 190/316 (60%), Gaps = 5/316 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NLV N M+ VK G A+++F+E+P R++VSWT +I G + + +L LF M
Sbjct: 236 NLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMR 295
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
+ P I + +V A G + +H Y +RG + IH+ ++D YAKCGC
Sbjct: 296 TLGIS-PDAIILTSVLSACASLGTLDFGTWVHEYINQRGIK-WDIHIGTAIVDMYAKCGC 353
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
I ALK+F S+ ++N +W +++ G AMHG+ EA+ FE M +KPN +TFL++L
Sbjct: 354 IEMALKIF--YSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAIL 411
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
AC H GLV+EG K+FD M + +LP ++HYGC+ID+ RAG LE+A ++A +P +
Sbjct: 412 TACCHCGLVDEGRKYFDNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMK-P 470
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
+V++W LL AC+ GN+E+ R+ ILE++ G +VL+ NI A R+ + RLRR
Sbjct: 471 DVLIWGLLLNACTTVGNIELSHRIQDYILELDHDDSGVFVLLSNISAINQRWSNVTRLRR 530
Query: 316 VVDERNALKFPGRSLV 331
++ +R K PG S++
Sbjct: 531 LMKDRGVRKAPGSSVI 546
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 128/244 (52%), Gaps = 11/244 (4%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G+ A +F+EM R+VVSW +I G+ + + A+++F RM EPS T+++V
Sbjct: 154 GDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAISVFFRM----DVEPSMTTLVSV 209
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A +NGD+ + IHG E+R ++ + N ++D Y K GC + A +F+++
Sbjct: 210 LAACARNGDLCTGKGIHGVIERRF--KVNLVLGNAMLDMYVKNGCFYEAKNIFDELPT-- 265
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
+++VSWT +I+G K+++E F M+ + + P+ + SVL+AC+ G ++ G +
Sbjct: 266 RDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACASLGTLDFG-TW 324
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
+ + + + DI ++DM + G +E A K+ + N W LL + H
Sbjct: 325 VHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQR--NTFTWNALLCGLAMH 382
Query: 271 GNVE 274
G V
Sbjct: 383 GLVH 386
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 118/252 (46%), Gaps = 16/252 (6%)
Query: 16 NLVTWNVM--ITGLVKWGELEYARSLFEEMPCR-NVVSWTGIIDGYTRMNRSNGALALFR 72
+ VT VM V++G+ YA E+ R + +I+GY A++++R
Sbjct: 37 DFVTSKVMEFFANFVEYGD--YACDYLEQGNTRLGSFPFNSLINGYVGGEFPQMAVSVYR 94
Query: 73 RMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK 132
RMV + P T + A R + +HG K G A H +V N LI Y
Sbjct: 95 RMVRDGFV-PDMFTFPVLLKACSNFSGSREGRQVHGVVVKLGLLADH-YVQNSLIRCYGA 152
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
CG A K+F+++ V +++VSW S+ISGF G EA+ F RM ++P+ T +
Sbjct: 153 CGDFSCAGKVFDEMLV--RDVVSWNSLISGFMKAGHFDEAISVFFRMD---VEPSMTTLV 207
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
SVL AC+ G + G + +V ++ ++DM + G +A+ + +P+
Sbjct: 208 SVLAACARNGDLCTGKGIHGVIERRFKV--NLVLGNAMLDMYVKNGCFYEAKNIFDELPT 265
Query: 253 EITNVVVWRTLL 264
++V W ++
Sbjct: 266 R--DIVSWTIMI 275
>gi|218199092|gb|EEC81519.1| hypothetical protein OsI_24907 [Oryza sativa Indica Group]
Length = 460
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 129/331 (38%), Positives = 196/331 (59%), Gaps = 10/331 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKW----GELEYARSLFEEMPCR--NVVSWTGII 55
L++G L E + VT + LV G E A +F+EMP R N+VSW ++
Sbjct: 132 LREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSML 191
Query: 56 DGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF 115
+ + R N L +F M+ ++ P TI++V A + G + + +H Y EK G
Sbjct: 192 NSFAANGRPNEVLTVFWEMLGVDFA-PDGFTIVSVLTACAEFGALALGRRVHVYVEKVGL 250
Query: 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
+ HVSN LID YAKCG + A ++FE++ + R +VSWTS+I G A +G GKEA+E
Sbjct: 251 -VENSHVSNALIDLYAKCGSVNDARRIFEEMGLGR-TVVSWTSLIVGLAANGFGKEALEL 308
Query: 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
F M++ L P +T + VL ACSH GLV++G ++FD+M E+ + P I+H GC++D+LG
Sbjct: 309 FSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLG 368
Query: 236 RAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV 295
RAGR+E+A +P E N VVWRTLLG+C+ H +E+G+ +++E++ G+ GDYV
Sbjct: 369 RAGRVEEAYDYIITMPLE-PNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYV 427
Query: 296 LMYNILAGVWRYGDAERLRRVVDERNALKFP 326
L+ N+ A V + D LR+ + + K P
Sbjct: 428 LLSNLYAAVGMWADVHVLRKTMVKDRVRKNP 458
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 126/330 (38%), Positives = 187/330 (56%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ +LF+ +P +N+ +WN MITG + G++ AR+ F+ MP R+ +SW II GY +
Sbjct: 313 MDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQS 372
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL LF M + + T + + + + +HG K G + +
Sbjct: 373 GYGEEALHLFVEMKR-DGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLES-GCY 430
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N L+ Y KCG I A +FE I E K +VSW ++I+G+A HG GKEA+ FE M+K
Sbjct: 431 VGNALLVMYCKCGNIDDAYIVFEGI--EEKEVVSWNTMIAGYARHGFGKEALMLFESMKK 488
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ P+ VT + VL+ACSH GLV++G ++F M ++ + + KHY C+ID+LGRAGRL+
Sbjct: 489 TGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLD 548
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A+ + +P E + W LLGA HGN E+GE+ + I EME G YVL+ N+
Sbjct: 549 DAQNLMKNMPFE-PDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLY 607
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+GD R+R + +R K PG S V
Sbjct: 608 AASGRWGDVGRMRLRMRDRGVKKVPGYSWV 637
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 139/269 (51%), Gaps = 27/269 (10%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LF+++P R+LV+WNVMI+G V++ L AR LF++MP R+VVSW ++ GY +
Sbjct: 101 QLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKE 160
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A +F M C+ + I+ + A QNG + + + + E + + + NC+
Sbjct: 161 AKEIFDEM-PCK----NSISWNGMLAAYVQNGRIEDARRLF---ESKA--DWELISWNCM 210
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+ Y K + A +F+ + ++ VSW ++ISG+A +G EA FE P
Sbjct: 211 MGGYVKRNRLVDARGIFD--RMPERDEVSWNTMISGYAQNGELLEAQRLFEE------SP 262
Query: 187 NR--VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
R T+ ++++ G+++E + FD M E+ V + +I + R++QA
Sbjct: 263 VRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSV-----SWNAIIAGYVQCKRMDQAR 317
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNV 273
++ +P + NV W T++ + +G++
Sbjct: 318 ELFEAMPCQ--NVSSWNTMITGYAQNGDI 344
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 145/331 (43%), Gaps = 73/331 (22%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
++K+ ++FDE+P +N ++WN M+ V+ G +E AR LFE ++SW ++ GY +
Sbjct: 157 YVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVK 216
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQ---------------- 104
NR A +F RM E E++ + QNG++ Q
Sbjct: 217 RNRLVDARGIFDRM-----PERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTA 271
Query: 105 LIHGYGE-------KRGFNAFHIHVS---NCLIDTYAKCGCIFSALKLFE---------- 144
++ GY + +R F+ S N +I Y +C + A +LFE
Sbjct: 272 MVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSW 331
Query: 145 -----------DISVER--------KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
DI+ R ++ +SW +II+G+A G G+EA+ F M++ +
Sbjct: 332 NTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGER 391
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC-----LIDMLGRAGRL 240
NR TF S L+ C+ +E G + ++V+ GC L+ M + G +
Sbjct: 392 LNRSTFTSTLSTCAEIAALELGKQVHGRVVKAG------LESGCYVGNALLVMYCKCGNI 445
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ A V GI E VV W T++ + HG
Sbjct: 446 DDAYIVFEGI--EEKEVVSWNTMIAGYARHG 474
>gi|414879404|tpg|DAA56535.1| TPA: pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/330 (37%), Positives = 195/330 (59%), Gaps = 10/330 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++ ++FD +P RN W+ M+TG K G+ E AR++F+ +P RN+V+W +I GY ++
Sbjct: 202 METAREVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPTRNLVNWNALIAGYAQI 261
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
S AL F M+ E +P E T+ ++ A Q G + + +H + + H
Sbjct: 262 GCSEQALEAFHLMLQ-ERVKPDEFTMASLLSACAQLGSLEQGKKVHDFINQEHIRKNHF- 319
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LID YAKCG + A +F+ S+ KN W ++IS A HG EA+ F +M++
Sbjct: 320 VMNGLIDMYAKCGDLAHARYIFD--SMRWKNNECWNTMISALASHGQSDEALHLFFQMER 377
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KPN +T L+VL AC+HGG V+EGL+ F+K+ + V ++HYGCL+D+LGRAG+L+
Sbjct: 378 SGRKPNTITVLAVLGACTHGGFVDEGLQIFNKL-DAYGVEAGVEHYGCLVDLLGRAGKLK 436
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG----GDYVLM 297
+A ++ + + SE N V+W +LLGAC H + EM VT +IL + + +Y+++
Sbjct: 437 EAYEIVNNM-SEEPNEVIWGSLLGACRVHRDAEMSRLVTEEILRLHSFHASSNDAEYIML 495
Query: 298 YNILAGVWRYGDAERLRRVVDERNALKFPG 327
NI+A R+ AE++RR + R K PG
Sbjct: 496 ANIMAASERWEQAEQMRRKMARRGVEKTPG 525
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 137/305 (44%), Gaps = 47/305 (15%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
R+L+ +++ K G L AR F+EMP RNV+S+ ++ GY +GALALF M
Sbjct: 89 RDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYAVAGDMDGALALFGGM 148
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQ------------------LIHGY------- 109
+ +T + T++ F + GD+ + L+ GY
Sbjct: 149 RS--WTHVTWATLIRGFA---EKGDMAEARRWFEATPPGMRTVVTWTVLVQGYVCAGDME 203
Query: 110 ------GEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 163
NAF V + ++ Y K G A +F+ I +NLV+W ++I+G+
Sbjct: 204 TAREVFDRMPARNAF---VWSSMVTGYFKAGDAEEARAVFDRIPT--RNLVNWNALIAGY 258
Query: 164 AMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD 223
A G ++A+E F M + +KP+ T S+L+AC+ G +E+G K D + +E + +
Sbjct: 259 AQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHDFINQE-HIRKN 317
Query: 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
LIDM + G L A + + N W T++ A + HG +
Sbjct: 318 HFVMNGLIDMYAKCGDLAHARYIFDSM--RWKNNECWNTMISALASHGQ---SDEALHLF 372
Query: 284 LEMER 288
+MER
Sbjct: 373 FQMER 377
>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
Length = 751
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/318 (38%), Positives = 194/318 (61%), Gaps = 6/318 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
KLFDE+PER++V+W +MI G G L+ ARSLF+ MP +N+ SW +I GY + +
Sbjct: 380 KLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYXQNKQPYE 439
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL LF M + EP E+TI++V PAI G + +H + ++ + +V L
Sbjct: 440 ALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDR-ATNVGTAL 498
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YAKCG I + +F+++ K SW ++I+ FA++G KEA+ F M P
Sbjct: 499 IDMYAKCGEIVKSRGVFDNMP--EKETASWNALINAFAINGRAKEALGLFMEMNHKGFMP 556
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N +T + VL+AC+H GLVEEG ++F K +EE + P I+HYGC++D+LGRAG L++AEK+
Sbjct: 557 NEITMIGVLSACNHSGLVEEGKRWF-KAMEEFGLTPKIEHYGCMVDLLGRAGCLQEAEKL 615
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E N ++ + L AC + +V ERV ++ ++ME G+Y+++ N+ A R
Sbjct: 616 MESMPYE-ANGIILSSFLFACGYSKDVARAERVLKEAIKMEAWNDGNYIMLRNLYANEKR 674
Query: 307 YGDAERLRRVVDERNALK 324
+ +A+ ++ ++ RN +K
Sbjct: 675 WKEADEVKGLM-RRNGVK 691
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 142/302 (47%), Gaps = 20/302 (6%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
+L ++ K+G+++ AR LF+EM R+ VSWT +I GY R + A LF +M+
Sbjct: 296 DLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMI 355
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
E + A + GD+ + + + +R ++ I +I Y+ G
Sbjct: 356 -----EKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTI-----MIYGYSSNGN 405
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFLSV 194
+ SA LF+ ++ KNL SW ++ISG+ + EA++ F MQ L+P+ VT +SV
Sbjct: 406 LDSARSLFD--AMPEKNLFSWNAMISGYXQNKQPYEALKLFHEMQSTTSLEPDEVTIVSV 463
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L A + G ++ G + + V ++ LIDM + G + ++ V +P +
Sbjct: 464 LPAIADLGALDLG-GWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKE 522
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEM-ERGYGGDYVLMYNILAGVWRYGDAERL 313
T W L+ A + +G + + +EM +G+ + + M +L+ G E
Sbjct: 523 T--ASWNALINAFAINGRAKEALGL---FMEMNHKGFMPNEITMIGVLSACNHSGLVEEG 577
Query: 314 RR 315
+R
Sbjct: 578 KR 579
>gi|449440231|ref|XP_004137888.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
gi|449521725|ref|XP_004167880.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 521
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 129/331 (38%), Positives = 193/331 (58%), Gaps = 7/331 (2%)
Query: 3 KDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
K L + +P+ N V+WN ++ ++ L AR +FEEMP R+VVSW II GY +
Sbjct: 196 KSADVLLESMPQTNAVSWNTLLARYIRLNNLVAARKVFEEMPERDVVSWNSIISGYVNVK 255
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV 122
GAL LF M +E+T +++ A + G + + IH +++ + ++
Sbjct: 256 DYKGALDLFHSMKQWN-IRATEVTFISILGACAELGALEIGKKIHDSLKEKHYR-IEGYL 313
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
N ++D YAKCG + AL++F ++ E K + W ++I G A+HG + A+E F+ M+
Sbjct: 314 GNAIVDMYAKCGELGLALEVFNEM--EMKPVSCWNAMIMGLAVHGHCERALEMFDSMKAE 371
Query: 183 V--LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
KPNR+TF+++L ACSH GL+ EG FF MV + +++PD+KHYGC+ID+L R G L
Sbjct: 372 DGDHKPNRITFIALLIACSHKGLLAEGRHFFSLMVTKYKIMPDLKHYGCMIDLLSRWGFL 431
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+A + P + V+WRTLLG C H +VE+GE RK+ E+E G GDYVL+ NI
Sbjct: 432 EEAYVMIKTCPFSSCS-VLWRTLLGGCRLHRHVELGEESFRKLAELEPGKDGDYVLLSNI 490
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ D ERLR+ + K G S V
Sbjct: 491 YAEEERWDDVERLRKEMINYGVCKKAGSSHV 521
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/324 (36%), Positives = 195/324 (60%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+F + ++V+W MI G K G++E AR LF++MP +N+V+W+ +I GY + N + A
Sbjct: 176 IFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKA 235
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
+ LF+ ++ + +E +++V + G + + H Y K G ++ + L+
Sbjct: 236 VELFK-VLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMT-LNLILGTALV 293
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D YA+CG I A+ +FED+ ++ +SWT++I+G AMHG + +++ F M + L P
Sbjct: 294 DMYARCGSIDKAVWVFEDLP--ERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPR 351
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TF +VL+ACSHGGLVE G + F+ M + V P ++HYGC++D+LGRAG+LE+AE+
Sbjct: 352 DITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFV 411
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P + N VW LLGAC H N E+GERV + ++++ + G YVL+ NI A +
Sbjct: 412 LKMPVK-PNAPVWGALLGACRIHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEW 470
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
+R+++ + K PG SL+
Sbjct: 471 EKVTEMRQMMKAKGLKKPPGHSLI 494
>gi|357498595|ref|XP_003619586.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
gi|355494601|gb|AES75804.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
Length = 528
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/343 (35%), Positives = 207/343 (60%), Gaps = 19/343 (5%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+D K+FDE+ ERN+V + V+++G ++ G++E +F+EM R+V +W +I G T+
Sbjct: 152 LRDAHKVFDEMSERNIVVFTVLVSGYLRVGDVEKGLMVFDEMVDRDVPAWNAVISGCTQN 211
Query: 62 NRSNGALALFRRMVA---------CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEK 112
+ + LFR MV C+ +P+++T++ V A G ++ + IHGY +
Sbjct: 212 GFFSEGIRLFREMVFAAGLGEGGFCKGNKPNQVTVVCVLSACGHGGMLQLGKWIHGYVYR 271
Query: 113 RGF--NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 170
GF ++F VSN L+D Y KCG + A K+FE +RK L SW S+I+ +A+HG +
Sbjct: 272 HGFVVDSF---VSNALVDMYGKCGSLELARKVFE--MDQRKGLTSWNSMINCYALHGKCE 326
Query: 171 EAVENFERMQKVV--LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG 228
+A+ FE+M + ++P+ VTF+ +LNAC+HGGLVE+G +F+ M++E + P I HYG
Sbjct: 327 DAITFFEKMVECGGGVRPDEVTFIGLLNACTHGGLVEQGCGYFEMMIKEYGIEPQIAHYG 386
Query: 229 CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
CLID+LGRAG+ ++A V G+ E + VVW +LL C HG ++ E +K++E++
Sbjct: 387 CLIDLLGRAGQFDEAMDVVKGMSME-PDEVVWGSLLNGCKVHGRTDLAEFAAKKLVEIDP 445
Query: 289 GYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
GG ++ NI + ++ + + + ++ + K PG S +
Sbjct: 446 HNGGYGTMLANIYGQLGKWDEMRNVWSKLKQQKSYKIPGCSWI 488
>gi|255540011|ref|XP_002511070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550185|gb|EEF51672.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 551
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/326 (37%), Positives = 198/326 (60%), Gaps = 6/326 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FDE +R++V++N ++ G VK GE AR +F+ MP R+ VSW +I GY + + N
Sbjct: 193 QVFDESSDRDVVSYNALVDGFVKAGEFVKAREIFDLMPMRDSVSWGSLIAGYAQGSYCNE 252
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ LF M+ + EP I +++ A Q G++ + IH Y +K A +S L
Sbjct: 253 AIGLFDLMMGLK-LEPDNIALVSALSACAQLGELEKGKQIHDYIKKNRIQADSF-LSTGL 310
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+D YAK GCI +A+K+FE +S + K+L++W +++ G AMHG + F RM + +KP
Sbjct: 311 VDFYAKSGCIDTAIKVFE-LSPD-KSLITWNAMLIGIAMHGNSHLLLNYFSRMMEAGIKP 368
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ ++FL VL CSHGGLV+E K FD+M V ++KHYGC+ D+L RAG +++A ++
Sbjct: 369 DGISFLGVLVGCSHGGLVDEAKKLFDEMESIYGVRRELKHYGCMADLLARAGLIKEAVEL 428
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
G+P ++ VW LLG C HGN+E+ E+ ++++E++ GG Y ++ N+ A R
Sbjct: 429 TKGLPMG-GDIFVWSGLLGGCRIHGNIEIAEQAAKQVMELKPEDGGVYSILANVYANADR 487
Query: 307 YGDAERLRRVVDERNAL-KFPGRSLV 331
+ D ++RR + A+ K GRS +
Sbjct: 488 WEDVVKIRRSMSSNRAVKKNAGRSSI 513
>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
Length = 603
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/322 (37%), Positives = 198/322 (61%), Gaps = 13/322 (4%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEM--PCRNVVSWTGIIDGYTRMNRSNGALALF 71
+ N+ +I + +++ AR +F+ + PC VV + +I GY R NR N AL+LF
Sbjct: 161 DDNVYVCPTLINMYTECEDVDSARXVFDRIVEPC--VVCYNAMITGYARRNRPNEALSLF 218
Query: 72 RRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYA 131
R M +Y +P+EIT+L+V + G + + IH Y +K F + + V+ LID +A
Sbjct: 219 REMQG-KYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKY-VKVNTALIDMFA 276
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191
KCG + A+ +FE + K+ +W+++I +A HG ++++ FERM+ ++P+ +TF
Sbjct: 277 KCGSLDDAVSIFEKM--RYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITF 334
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
L +LNACSH G VEEG K+F +MV + ++P IKHYG ++D+L AG LE A + +P
Sbjct: 335 LGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNLEDAYEFIDKLP 394
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA--GVWRYGD 309
T ++WR LL ACS H N+++ E+V+ +I E++ +GGDYV++ N+ A W Y D
Sbjct: 395 ISPTP-MLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVD 453
Query: 310 AERLRRVVDERNALKFPGRSLV 331
+ LR+V+ +R A+K PG S +
Sbjct: 454 S--LRKVMKDRKAVKVPGCSSI 473
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 17/249 (6%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR-----MVACEYTEPSEI 85
+ YAR LFE M ++V + + GY+R +LF ++ YT PS +
Sbjct: 77 SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLL 136
Query: 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFED 145
AV A+ + + +H K G + +++V LI+ Y +C + SA +F+
Sbjct: 137 KACAVAKALEEG------RQLHCLSMKLGLDD-NVYVCPTLINMYTECEDVDSARXVFDR 189
Query: 146 ISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVE 205
I VE +V + ++I+G+A EA+ F MQ LKPN +T LSVL++C+ G ++
Sbjct: 190 I-VE-PCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLD 247
Query: 206 EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
G K+ K ++ +K LIDM + G L+ A + + + T W ++
Sbjct: 248 LG-KWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQ--AWSAMIV 304
Query: 266 ACSFHGNVE 274
A + HG E
Sbjct: 305 AYANHGKAE 313
>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
Length = 639
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/326 (36%), Positives = 196/326 (60%), Gaps = 6/326 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FDE+ +N++ W M++G G L+ AR LFE P R++V WT +I+GY + N + A
Sbjct: 272 IFDEMGNKNVICWTSMVSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFNLFDEA 331
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LFR+M + P ++ + Q G + + +HGY + + V L+
Sbjct: 332 LKLFRKM-QIQRLRPDNFILVTLLKGCAQTGALEQGKWLHGYIHENSITLDRV-VGTALV 389
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D YAKCGC+ AL++F ++ + ++ SWTS+I G A++GM +A++ F +M++ +P+
Sbjct: 390 DVYAKCGCVEKALEVFYEM--KERDTASWTSVIYGLAVNGMTSKALDFFSQMEEAGFRPD 447
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TF+ VL AC+HGGLVEEG ++FD M + ++ P +HY CLID+L RAG L++AE +
Sbjct: 448 DITFIGVLTACNHGGLVEEGRRYFDSMTKTYKIQPKSEHYSCLIDLLCRAGLLDEAELLL 507
Query: 248 SGIPSEITNVVV--WRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
IP E +++VV + +LL AC +GN++M ERV R++ +E + L+ ++ A
Sbjct: 508 EMIPIESSDIVVPLYCSLLSACRNYGNLKMSERVGRRLERVEVKDSSVHTLLASVYASAN 567
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
R+ D +RR + E KFPG S +
Sbjct: 568 RWEDVTTVRRKMKELGIRKFPGCSSI 593
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 146/326 (44%), Gaps = 54/326 (16%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G++E A+ +F+E+P R+VVSW +I Y + A+A+FRRM + E T+++
Sbjct: 163 GKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFRRMRRESNLKADEATVVST 222
Query: 91 FPA--IWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
A + +N +V + IH Y + + N L+D Y KCGC+ A +F+++
Sbjct: 223 LSACSVLRNQEVG--EEIHRYVDAE--LEMTTKIGNALLDMYCKCGCVDKARAIFDEMG- 277
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFER------------------------------ 178
KN++ WTS++SG+A +G EA E FER
Sbjct: 278 -NKNVICWTSMVSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFNLFDEALKLFR 336
Query: 179 -MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
MQ L+P+ +++L C+ G +E+G K+ + E + D L+D+ +
Sbjct: 337 KMQIQRLRPDNFILVTLLKGCAQTGALEQG-KWLHGYIHENSITLDRVVGTALVDVYAKC 395
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM-----ERGYGG 292
G +E+A +V + T W +++ + +G +T K L+ E G+
Sbjct: 396 GCVEKALEVFYEMKERDT--ASWTSVIYGLAVNG-------MTSKALDFFSQMEEAGFRP 446
Query: 293 DYVLMYNILAGVWRYGDAERLRRVVD 318
D + +L G E RR D
Sbjct: 447 DDITFIGVLTACNHGGLVEEGRRYFD 472
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 120/247 (48%), Gaps = 15/247 (6%)
Query: 31 GELEYARSL--FEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
G + YA + F + PC +V + +I + L LF + + P T+
Sbjct: 64 GSIRYAERVLGFVQSPC--LVMYNLMIKAVAKDENFRKVLVLFSELRK-QGLNPDNFTLP 120
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
VF A+ G V + +HGY K GF+A V N ++ Y G + A K+F++I
Sbjct: 121 PVFKAMGCLGKVVEGEKVHGYVVKSGFDAC---VCNSVMGMYGALGKMEVAKKVFDEIP- 176
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFLSVLNACSHGGLVEEG 207
+++VSW +IS + H ++A+ F RM++ LK + T +S L+ACS E G
Sbjct: 177 -ERDVVSWNVLISSYVGHRKFEDAIAVFRRMRRESNLKADEATVVSTLSACSVLRNQEVG 235
Query: 208 LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC 267
+ + E E+ I + L+DM + G +++A + + ++ NV+ W +++
Sbjct: 236 EEIHRYVDAELEMTTKIGN--ALLDMYCKCGCVDKARAIFDEMGNK--NVICWTSMVSGY 291
Query: 268 SFHGNVE 274
+ +G+++
Sbjct: 292 ASNGSLD 298
>gi|195651797|gb|ACG45366.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/332 (37%), Positives = 196/332 (59%), Gaps = 10/332 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++ ++FD +P RN W+ M+TG K G+ E AR++F+ +P RN+V+W +I GY ++
Sbjct: 202 METAREVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPTRNLVNWNALIAGYAQI 261
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
S AL F M+ E +P E T+ ++ A Q G + + +H + + H
Sbjct: 262 GCSEQALEAFHLMLQ-ERVKPDEFTMASLLSACAQLGSLEQGKKVHDFINQEHIRKNHF- 319
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LID YAKCG + A +F+ S+ KN W ++IS A HG EA+ F +M++
Sbjct: 320 VMNGLIDMYAKCGDLAHARYIFD--SMRWKNNECWNTMISALASHGQSDEALHLFFQMER 377
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KPN +T L+VL AC+HGG V+EGL+ F+K+ + V ++HYGCL+D+LGRAG+L+
Sbjct: 378 SGRKPNTITVLAVLGACTHGGFVDEGLQIFNKL-DAYGVGAGVEHYGCLVDLLGRAGKLK 436
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG----GDYVLM 297
+A ++ + + SE N V+W +LLGAC H + EM VT +IL + + +Y+++
Sbjct: 437 EAYEIVNNM-SEEPNEVIWGSLLGACRVHRDAEMSRLVTEEILRLHSFHASSNDAEYIML 495
Query: 298 YNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
NI+A R+ AE++RR + R K PG S
Sbjct: 496 ANIMAASERWEQAEQMRRKMARRGVEKTPGCS 527
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 137/305 (44%), Gaps = 47/305 (15%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
R+L+ +++ K G L AR F+EMP RNV+S+ ++ GY +GALALF M
Sbjct: 89 RDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYAVAGDMDGALALFGGM 148
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQ------------------LIHGY------- 109
+ +T + T++ F + GD+ + L+ GY
Sbjct: 149 RS--WTHVTWATLIRGFA---EKGDMAEARRWFEATPPGMRTVVTWTVLVQGYVCAGDME 203
Query: 110 ------GEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 163
NAF V + ++ Y K G A +F+ I +NLV+W ++I+G+
Sbjct: 204 TAREVFDRMPARNAF---VWSSMVTGYFKAGDAEEARAVFDRIPT--RNLVNWNALIAGY 258
Query: 164 AMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD 223
A G ++A+E F M + +KP+ T S+L+AC+ G +E+G K D + +E + +
Sbjct: 259 AQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHDFINQE-HIRKN 317
Query: 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
LIDM + G L A + + N W T++ A + HG +
Sbjct: 318 HFVMNGLIDMYAKCGDLAHARYIFDSM--RWKNNECWNTMISALASHGQ---SDEALHLF 372
Query: 284 LEMER 288
+MER
Sbjct: 373 FQMER 377
>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
Length = 638
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 128/354 (36%), Positives = 199/354 (56%), Gaps = 35/354 (9%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LF+++PER+LV+WN +I G K G +E+A SLF MP R+V+SW+ +IDGY ++
Sbjct: 246 ELFEKMPERDLVSWNTIIGGFAKCGRIEFAHSLFNRMPKRDVISWSNMIDGYAKLGDIKV 305
Query: 67 ALALFRRMVACE----------------YTE---------------PSEITILAVFPAIW 95
A LF M + YTE P E T++ AI
Sbjct: 306 ARTLFDEMPDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVALSAIS 365
Query: 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 155
Q G V +H Y + G + V+ LID Y+KCG I +A+ +F+ V++K +
Sbjct: 366 QLGHVEKAASMHNYFLENGISVTG-KVAVALIDMYSKCGSIENAILIFD--GVDQKGIDH 422
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215
W ++ISG A +G+GK A M ++ +KP+ +TF+ VLNAC+H GLV+EGL F+ M
Sbjct: 423 WNAMISGMARNGLGKLAFGMLLEMHRLSVKPDGITFIGVLNACAHAGLVKEGLICFELMR 482
Query: 216 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEM 275
+ ++ P ++HYGC++D+LG+AG +E A K +P E N ++WRTLL AC H N +
Sbjct: 483 KVHKLEPKLQHYGCMVDILGKAGLVEGALKFIEEMPIE-PNDIIWRTLLSACQNHENFTI 541
Query: 276 GERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
GE + + ++ M+ YVL+ NI A + + A ++R ++ ++N K PG S
Sbjct: 542 GELIAKHLMTMDSCNSSSYVLLSNIYARLGLWSAASKVRMMMKKQNLTKVPGCS 595
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 141/286 (49%), Gaps = 22/286 (7%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYTRMNRS 64
++FD +P ++ V++N MI G VK G ++ AR LF+ MP +N++SW ++ G+ +
Sbjct: 181 QVFDRMPIQDSVSYNSMIDGYVKSGTIDLARELFDSMPLEDKNLISWNSMLGGFAQTKDG 240
Query: 65 NG-ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
G AL LF +M E ++ + + G + + KR I S
Sbjct: 241 IGLALELFEKM-----PERDLVSWNTIIGGFAKCGRIEFAHSLFNRMPKRDV----ISWS 291
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N +ID YAK G I A LF+++ K++V++ +I++G+A +G EA+E F MQ+
Sbjct: 292 N-MIDGYAKLGDIKVARTLFDEMP--DKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQS 348
Query: 184 -LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
L P+ T + L+A S G VE+ + +E + K LIDM + G +E
Sbjct: 349 NLSPDETTLVVALSAISQLGHVEKAASMHNYFLENGISVTG-KVAVALIDMYSKCGSIEN 407
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
A + G+ + + W ++ + +G +G+ +LEM R
Sbjct: 408 AILIFDGVDQK--GIDHWNAMISGMARNG---LGKLAFGMLLEMHR 448
>gi|357507475|ref|XP_003624026.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360495|gb|ABN08505.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499041|gb|AES80244.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 646
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/337 (36%), Positives = 200/337 (59%), Gaps = 24/337 (7%)
Query: 2 LKDGSKLFDEL---PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGY 58
L+ K+F++L R+ V WN MI+ + G+L AR LF++MP R+ VSW +I GY
Sbjct: 319 LEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSARHLFDKMPQRDTVSWNSMIAGY 378
Query: 59 TRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGE------K 112
T+ S A+ LF M++ E ++P E+T+++VF A G++ G G K
Sbjct: 379 TQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSACGHLGEL-------GLGNWAVSILK 431
Query: 113 RGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEA 172
I V N LI Y++CG + A+ +F++++ ++LVS+ ++ISGFA HG G E+
Sbjct: 432 ENHIQISISVYNSLISMYSRCGSMQDAVLIFQEMAT--RDLVSYNTLISGFAEHGHGMES 489
Query: 173 VENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLID 232
+E +M++ ++P+R+T++++L ACSH GL+ EG + F+ + PD+ HY C+ID
Sbjct: 490 IELLLKMKEDGIEPDRITYIAILTACSHAGLLGEGQRLFESI-----KFPDVDHYACMID 544
Query: 233 MLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG 292
MLGRAGRLE+A K+ +P E + ++ +LL A S H VE+GE K+ ++E G
Sbjct: 545 MLGRAGRLEEAMKLIQSMPME-PHAGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNSG 603
Query: 293 DYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
+YVL+ NI A R+ D +++R + ++ K G S
Sbjct: 604 NYVLLSNIYASAGRWKDGDKVRDTMRKQGVKKTTGLS 640
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 101/364 (27%), Positives = 167/364 (45%), Gaps = 51/364 (14%)
Query: 3 KDGSKLF----DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGY 58
++ S LF D+ RN++TW MITG K G L+ AR F++MP R+VVSW ++ GY
Sbjct: 182 EEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGY 241
Query: 59 TRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGD-VRNCQLIHGYGEKRGFNA 117
+ + LF M++ +P E T + V + GD + ++ + GF
Sbjct: 242 AQGGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCSSLGDPCLSESIVRKLDDTVGFRP 301
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISV----------------------------- 148
+ V L+D +AKCG + +A K+FE + V
Sbjct: 302 NYF-VKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSARHLF 360
Query: 149 ---ERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFLSVLNACSHGGLV 204
+++ VSW S+I+G+ +G +A++ FE M KP+ VT +SV +AC H G
Sbjct: 361 DKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSACGHLG-- 418
Query: 205 EEGL-KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTL 263
E GL + +++E + I Y LI M R G ++ A + + + ++V + TL
Sbjct: 419 ELGLGNWAVSILKENHIQISISVYNSLISMYSRCGSMQDAVLIFQEMATR--DLVSYNTL 476
Query: 264 LGACSFHGNVEMGERVTRKILEM-ERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNA 322
+ + HG+ G +L+M E G D + IL G +R+ + +
Sbjct: 477 ISGFAEHGH---GMESIELLLKMKEDGIEPDRITYIAILTACSHAGLLGEGQRLFE---S 530
Query: 323 LKFP 326
+KFP
Sbjct: 531 IKFP 534
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 131/308 (42%), Gaps = 47/308 (15%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+R+ N ++ K+G +E+AR LF+EMP R V W +I GY + A LF
Sbjct: 131 DRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHV 190
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M E + RN + +I +AK
Sbjct: 191 MGDQEIS--------------------RN-----------------VITWTTMITGHAKK 213
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFL 192
G + +A F+ + +++VSW +++SG+A G +E + F M ++P+ T++
Sbjct: 214 GNLKTARMYFDKM--PERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWV 271
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP- 251
+V+++CS G K+ + P+ L+DM + G LE A K+ +
Sbjct: 272 TVISSCSSLGDPCLSESIVRKLDDTVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGV 331
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
+ + V W ++ A + G++ + K+ + D V +++AG + G++
Sbjct: 332 YKYRSSVPWNAMISAYARVGDLPSARHLFDKMPQR------DTVSWNSMIAGYTQNGESV 385
Query: 312 RLRRVVDE 319
+ ++ +E
Sbjct: 386 KAIKLFEE 393
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/299 (21%), Positives = 132/299 (44%), Gaps = 26/299 (8%)
Query: 35 YARSLFEEMPCRNVVSWTGIIDGYTRMN-RSNGALALFRRMVACEYTEPSEITILAVFPA 93
Y +F +V +T ++ Y+++ R+ ++LF+ M+ +P+ F +
Sbjct: 54 YTCHIFHAATHPDVRVFTFMLKYYSQIGVRAQVPVSLFKHMLRHCNIKPN-----TSFYS 108
Query: 94 IWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 153
+ L + K G++ H +V N ++ YAK G I A KLF+++ + +
Sbjct: 109 VMMKSAGSESMLFLAHVLKSGYDRDH-YVRNGILGIYAKYGPIEFARKLFDEM--PDRTV 165
Query: 154 VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDK 213
W +ISG+ G +EA F M + N +T+ +++ + G ++ +FDK
Sbjct: 166 ADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDK 225
Query: 214 MVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI-------PSEITNVVVWRTLLGA 266
M E V + ++ + G E+ ++ + + P E T W T++ +
Sbjct: 226 MPERSVV-----SWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETT----WVTVISS 276
Query: 267 CSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKF 325
CS G+ + E + RK L+ G+ +Y + +L + G+ E ++ ++ K+
Sbjct: 277 CSSLGDPCLSESIVRK-LDDTVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKY 334
>gi|345505226|gb|AEN99837.1| chlororespiratory reduction 4, partial [Lobularia maritima]
Length = 570
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 194/332 (58%), Gaps = 7/332 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D LFD +P R++VTW MI G K G + A+SLF+ MP R+VV++ ++ GY +
Sbjct: 232 IEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHKAKSLFDVMPHRDVVAYNSMMGGYVQN 291
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY-GEKRGFNAFHI 120
AL +F M + P E T++ V AI Q G + IH Y EKR +
Sbjct: 292 KYHMEALEVFYDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIVEKRFLLDGKL 351
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V+ LID Y+KCG I A+ +FE I E K++ W ++I G A+HG+G+ A + ++
Sbjct: 352 GVA--LIDMYSKCGSIQQAMAVFEGI--ENKSIDHWNAMIGGLAVHGLGEAAFDMLMEIE 407
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
K +KP+ +TF+ VLNACSH GLV+EGL F+ M + ++ P ++HYGC++D+L R+G +
Sbjct: 408 KRFIKPDYITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDLLARSGSI 467
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG-GDYVLMYN 299
E A+ + S +P E N V+WRT L ACS H E E V + L ++ GY YVL+ N
Sbjct: 468 ELAKHLISEMPIE-PNDVIWRTFLNACSHHKEFETRELVVAENLILQAGYNPSSYVLLSN 526
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ A + D R+R ++ ER K PG S +
Sbjct: 527 MYASFEMWEDVRRVRTMMKERKIEKVPGCSWI 558
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 155/299 (51%), Gaps = 21/299 (7%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDGYTRMNRS 64
++FD +P+R+ V++N MI G VK G +E AR LF+ MP +N++SW +I GY + R
Sbjct: 141 QVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPKEKKNLISWNSMIGGYAQ--RE 198
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
+G + + ++ A E E I+ ++ ++G + + + + +R +
Sbjct: 199 DG-VDIASKLFA-EMPEKDLISWNSLIDGYVKHGRIEDAKGLFDVMPRRDVVTW-----A 251
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV- 183
+ID YAK G + A LF+ + +++V++ S++ G+ + EA+E F M+K
Sbjct: 252 TMIDGYAKLGFVHKAKSLFD--VMPHRDVVAYNSMMGGYVQNKYHMEALEVFYDMEKESH 309
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
L P+ T + VL+A + G + + + +VE+ L D K LIDM + G ++QA
Sbjct: 310 LSPDETTLVIVLSAIAQLGRLSKAVDIHLYIVEK-RFLLDGKLGVALIDMYSKCGSIQQA 368
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY-GGDYVLMYNIL 301
V GI E ++ W ++G + HG +GE ++E+E+ + DY+ +L
Sbjct: 369 MAVFEGI--ENKSIDHWNAMIGGLAVHG---LGEAAFDMLMEIEKRFIKPDYITFVGVL 422
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 104/217 (47%), Gaps = 18/217 (8%)
Query: 51 WTGIIDGYTRMNRSNGALALFRRMVACEYTEP-SEITILAVFPAIWQNGDVRNCQLIHGY 109
W +I ++ AL L M+ E P + ++ V A + G + IHG+
Sbjct: 53 WNAVIKSHSHGVDPRQALFLLCSMI--ENNVPVDKFSLSLVTKACSRLGFAKEGMQIHGF 110
Query: 110 GEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 169
K + + + NCLI Y KC C+ A ++F+ + +++ VS+ S+I G+ G+
Sbjct: 111 LTKTVICS-DLFLQNCLIGLYIKCSCLGYARQVFD--RMPQRDSVSYNSMIDGYVKCGLI 167
Query: 170 KEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP--DIKHY 227
+ A E F+ M K K N +++ S++ + E+G+ K+ E +P D+ +
Sbjct: 168 ESARELFDLMPKE--KKNLISWNSMIGGYAQR---EDGVDIASKLFAE---MPEKDLISW 219
Query: 228 GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
LID + GR+E A+ + +P +VV W T++
Sbjct: 220 NSLIDGYVKHGRIEDAKGLFDVMPRR--DVVTWATMI 254
>gi|326491225|dbj|BAK05712.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 128/321 (39%), Positives = 192/321 (59%), Gaps = 9/321 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEM-PCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
++V N ++ K G+ A F M P +N+V+W +I + R AL LFR M
Sbjct: 198 DVVACNALVDMYAKCGDSAAALRCFRTMVPTKNLVTWNTMISAHARAGELQEALELFREM 257
Query: 75 V---ACEYTE-PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTY 130
+ C + P + T +AV A + G + + +H Y + G +A V N LID Y
Sbjct: 258 LQQQGCTSSPLPDDATFVAVLGACARLGALDAGRWVHAYIVRTGRDAAAGVVGNALIDMY 317
Query: 131 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVT 190
AKCG + A ++F+ ++ R+++ ++TS+ISG AMHG G+EA+ F M++ ++PN VT
Sbjct: 318 AKCGAVEQAAEVFD--AMTRRDVYTYTSMISGLAMHGRGEEALALFGDMRQARVRPNEVT 375
Query: 191 FLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI 250
FL VL+AC H G +E+GL+ FD M E V P I+HYGC++DMLGRAGRL++AE++ S +
Sbjct: 376 FLGVLSACCHAGNIEDGLRHFDAMAELHGVTPGIEHYGCVVDMLGRAGRLDEAEELVSVM 435
Query: 251 PSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDA 310
P + ++W +LL AC HG+V+ ERV R++ E E GDYVLM N+ A R+G A
Sbjct: 436 PIR-PDAIIWGSLLAACRAHGHVDRAERVMRRMAEDEDD-AGDYVLMSNMYAQEGRHGKA 493
Query: 311 ERLRRVVDERNALKFPGRSLV 331
++RR + K PG SL+
Sbjct: 494 VQVRRQMRRGKVDKVPGCSLI 514
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 106/236 (44%), Gaps = 9/236 (3%)
Query: 44 PCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNC 103
P +VVSWT ++ + R+ A LF M + A F A G++
Sbjct: 124 PAPDVVSWTAMVTWHARLGLFREAAELFLAMADDGAVVVDAVAAAAAFAACAGAGELVLA 183
Query: 104 QLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 163
+ +H + G A + N L+D YAKCG +AL+ F + V KNLV+W ++IS
Sbjct: 184 REVHRRVLEAGV-ALDVVACNALVDMYAKCGDSAAALRCFRTM-VPTKNLVTWNTMISAH 241
Query: 164 AMHGMGKEAVENFERMQK-----VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEEC 218
A G +EA+E F M + P+ TF++VL AC+ G ++ G +V
Sbjct: 242 ARAGELQEALELFREMLQQQGCTSSPLPDDATFVAVLGACARLGALDAGRWVHAYIVRTG 301
Query: 219 EVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
LIDM + G +EQA +V + +V + +++ + HG E
Sbjct: 302 RDAAAGVVGNALIDMYAKCGAVEQAAEVFDAMTRR--DVYTYTSMISGLAMHGRGE 355
>gi|224075377|ref|XP_002304609.1| predicted protein [Populus trichocarpa]
gi|222842041|gb|EEE79588.1| predicted protein [Populus trichocarpa]
Length = 431
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/328 (36%), Positives = 196/328 (59%), Gaps = 9/328 (2%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFDE+P+RN+VTWN MITG + G + ARSLFE MP R+ SW+ +I Y +
Sbjct: 109 LFDEMPQRNIVTWNTMITGYSRSGSINKARSLFEAMPVRDAASWSAMITCYINNGFRDQG 168
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGD--VRNCQLIHGYGEKRGFNAFHIHVSNC 125
L+ F+ M+A E +P ++T+ +V G + + +HG+ K G+ ++ +
Sbjct: 169 LSFFQEMMANENPKPDQVTVGSVLSGCAHMGSLGLLAGKSVHGFVVKNGWE-LNVDIGTL 227
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
L+D YAKCG +A+ +F + ++ +N+ +WT++I G A HG +E + F+ MQ+ ++
Sbjct: 228 LVDMYAKCGFFKNAVWVF--VLMQERNVSTWTALICGAAQHGFCQEVLSLFKMMQEAGVR 285
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN +TF +LNAC+ GL+EEG K+F KM++E + P I+HYGC++DM G+AG LE+A +
Sbjct: 286 PNEMTFTGILNACARKGLIEEGRKYF-KMIKETGLEPRIQHYGCMVDMFGKAGLLEEAYE 344
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE--MERGYGGDYVLMYNILAG 303
V + E N+V+W + L AC H ++ +RV ++L GG Y L+ ++
Sbjct: 345 VIKEMEFE-PNIVIWGSFLSACKMHKQFDIADRVIGQVLRDIKPENDGGIYSLVSDLYVL 403
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
++ DAER+R +V +N K G S +
Sbjct: 404 NKKWDDAERVRNLVLNQNVRKARGSSCI 431
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 12/131 (9%)
Query: 112 KRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKE 171
K GFN H++VS CL+ YA A LF+++ ++N+V+W ++I+G++ G +
Sbjct: 81 KLGFNT-HVYVSTCLLHAYAVMS-FDQACDLFDEMP--QRNIVTWNTMITGYSRSGSINK 136
Query: 172 AVENFERMQKVVLKPNR--VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC 229
A FE M P R ++ +++ + G ++GL FF +M+ PD G
Sbjct: 137 ARSLFEAM------PVRDAASWSAMITCYINNGFRDQGLSFFQEMMANENPKPDQVTVGS 190
Query: 230 LIDMLGRAGRL 240
++ G L
Sbjct: 191 VLSGCAHMGSL 201
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/333 (36%), Positives = 197/333 (59%), Gaps = 7/333 (2%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
FL+ G K+FDE+P R++++W +I+ VK G +E A LF+ +P +++V+WT ++ G+ +
Sbjct: 197 FLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQ 256
Query: 61 MNRSNGALALFRRMVACEY-TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
+ A+ F +M E+ E EIT++ V A Q G + I EK F H
Sbjct: 257 NAKPREAIMFFEKMQ--EFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKH 314
Query: 120 -IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER 178
+ V + LID Y+KCG + A ++F+ ++ +N+ S++S+I GFAMHG +A++ F+
Sbjct: 315 SVVVGSALIDMYSKCGSVGDAYRVFQ--GMKERNVYSYSSMILGFAMHGRVHDAMKLFDE 372
Query: 179 MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
M K +KPNRVTF+ VL ACSH G+VE+G + F+ M + + P HY C++D+LGRAG
Sbjct: 373 MVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAG 432
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMY 298
RL++A ++ +P E + VW LLGAC H + ++ + E+E G+Y+L+
Sbjct: 433 RLQEAHELVKTMPIE-PHGGVWGALLGACRIHKSPDIAAIAANHLFELEPYCIGNYILLA 491
Query: 299 NILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
NI A R+ D +R+++ R K P S +
Sbjct: 492 NIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWI 524
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 126/289 (43%), Gaps = 45/289 (15%)
Query: 35 YARSLFEEMPCRNVVSWTGIIDGY---TRMNRSNGALALFRRMVACEYTEPSEITILAVF 91
Y S+F ++ N + +I GY R+ S +L R+ E P T A+F
Sbjct: 98 YPLSIFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRK----EGVVPVSFTFTALF 153
Query: 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS---- 147
A DV + IHG G +HV N +ID Y KCG + K+F+++
Sbjct: 154 KACGAKMDVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDV 213
Query: 148 -------------------------VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
+ K++V+WT ++SGFA + +EA+ FE+MQ+
Sbjct: 214 ISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEF 273
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY----GCLIDMLGRAG 238
++ + +T + V++AC+ G + + + E+ E KH LIDM + G
Sbjct: 274 GVETDEITLIGVISACAQLGAAKYA-DWIRDVAEKSEF--GGKHSVVVGSALIDMYSKCG 330
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME 287
+ A +V G+ NV + +++ + HG V ++ ++++ E
Sbjct: 331 SVGDAYRVFQGMKER--NVYSYSSMILGFAMHGRVHDAMKLFDEMVKTE 377
>gi|345505234|gb|AEN99841.1| chlororespiratory reduction 4, partial [Raphanus sativus]
Length = 577
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 134/360 (37%), Positives = 206/360 (57%), Gaps = 39/360 (10%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM--- 61
SKLFDE+PE++L++WN MI G VK G +E A+ LF+ MP R+VV+W +IDGY ++
Sbjct: 212 ASKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLV 271
Query: 62 ---------------------------NRSN-GALALFRRMVACEYTEPSEITILAVFPA 93
NR + AL +F M + P E T++ V A
Sbjct: 272 HQAKTLFDQMPHRDVVAYNSMMSGFVQNRYHIEALEVFNHMEKESHLSPDETTLVIVLSA 331
Query: 94 IWQNGDVRNCQLIHGY-GEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
I Q G + +H Y EKR + + V+ LID Y+KCG I A+++FE I E K+
Sbjct: 332 IAQLGRLTKAIDMHLYIVEKRFLLSGKLGVA--LIDMYSKCGSIQHAMRVFEGI--ESKS 387
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
+ W ++I G A+HG+G+ A + ++++ +KP+ +TF+ VLNACSH GLV+EGL F+
Sbjct: 388 IDHWNAMIGGLAVHGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFE 447
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
M + ++ P ++HYGC++D+L R+G +E A+ + +P E N V+WRT L ACS H
Sbjct: 448 LMRRKHKIEPRLQHYGCMVDILARSGSIELAKNLIEEMPIE-PNDVIWRTFLNACSHHKE 506
Query: 273 VEMGERVTRKILEMERGYG-GDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
E GE V + ++ ++ GY YVL+ N+ A + D R+R ++ E+ K PG S +
Sbjct: 507 FETGELVAKHLI-LQAGYNPSSYVLLSNMYASNGMWKDVRRVRTMMKEKKIEKLPGCSWI 565
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 147/286 (51%), Gaps = 22/286 (7%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDGYT-RMNR 63
++FD +P+R+ V++N MI G VK G +E A LF+ MP RN+++W +I GY R +
Sbjct: 149 QVFDRMPQRDSVSYNSMIDGYVKCGLVESAGELFDLMPREKRNLITWNSMIGGYAQRADG 208
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
N A LF M E I+ ++ ++G + + + + +R + I
Sbjct: 209 VNVASKLFDEM-----PEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAI--- 260
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
+ID Y K G + A LF+ + +++V++ S++SGF + EA+E F M+K
Sbjct: 261 --MIDGYGKLGLVHQAKTLFDQMP--HRDVVAYNSMMSGFVQNRYHIEALEVFNHMEKES 316
Query: 184 -LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
L P+ T + VL+A + G + + + +VE+ +L K LIDM + G ++
Sbjct: 317 HLSPDETTLVIVLSAIAQLGRLTKAIDMHLYIVEKRFLLSG-KLGVALIDMYSKCGSIQH 375
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
A +V GI S+ ++ W ++G + HG +GE +L++ER
Sbjct: 376 AMRVFEGIESK--SIDHWNAMIGGLAVHG---LGESAFDMLLQIER 416
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/326 (23%), Positives = 134/326 (41%), Gaps = 59/326 (18%)
Query: 34 EYARSLFEEMPCRNVVS--------WTGIIDGYTRMNRSNGALALFRRMV---------- 75
E+AR +F E R+V W +I ++ AL LF M+
Sbjct: 36 EFARCVFHEYHSRSVSPGEIKDPFLWNAVIKSHSHGADPRKALLLFCLMLENGVLVDKFS 95
Query: 76 ------ACE----YTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV--- 122
AC E ++ + W + ++NC + G K G F V
Sbjct: 96 MSLVLKACSRLGFAKEGMQVHGFLIKSRTWSDLFLQNCLI--GLYLKCGCLGFARQVFDR 153
Query: 123 --------SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKE-AV 173
N +ID Y KCG + SA +LF+ + E++NL++W S+I G+A G A
Sbjct: 154 MPQRDSVSYNSMIDGYVKCGLVESAGELFDLMPREKRNLITWNSMIGGYAQRADGVNVAS 213
Query: 174 ENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDM 233
+ F+ M + + +++ S++ G +E+ FD M D+ + +ID
Sbjct: 214 KLFDEMP----EKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRR-----DVVTWAIMIDG 264
Query: 234 LGRAGRLEQAEKVASGIPSEITNVVVWRTLL-GACSFHGNVEMGERVTRKILEMERGYGG 292
G+ G + QA+ + +P +VV + +++ G ++E E +E E
Sbjct: 265 YGKLGLVHQAKTLFDQMPHR--DVVAYNSMMSGFVQNRYHIEALEVFNH--MEKESHLSP 320
Query: 293 DYVLMYNILAGVWRYGDAERLRRVVD 318
D + +L+ + + G RL + +D
Sbjct: 321 DETTLVIVLSAIAQLG---RLTKAID 343
>gi|297805312|ref|XP_002870540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316376|gb|EFH46799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 547
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 131/362 (36%), Positives = 197/362 (54%), Gaps = 37/362 (10%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR- 60
L++ ++FD +PERNL TWN ++ GLVK G+L AR LF+EMP R+++S+T +IDGY +
Sbjct: 189 LEEAKRMFDLMPERNLGTWNALVDGLVKSGDLVNARKLFDEMPKRDIISYTSMIDGYAKG 248
Query: 61 ------------------------------MNRSNGALALFRRMVACEYTEPSEITILAV 90
+ N A +F M A + +P E ++ +
Sbjct: 249 GDMVSARDLFENARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCA-KNVKPDEFIMVGL 307
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH-VSNCLIDTYAKCGCIFSALKLFEDISVE 149
A Q G C+ + Y + N F H V LID AKCG + A KLFE++
Sbjct: 308 MSACSQMGCFELCEKVDSYLHQ-SMNKFSSHYVIPALIDMNAKCGHMDRAAKLFEEMP-- 364
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
+++LVS+ S++ G A+HG G EAV FE+M + P+ V F +L CS LVEEGL+
Sbjct: 365 QRDLVSYCSMMEGMAIHGCGSEAVRLFEKMVDEGIVPDEVAFTVILKVCSQSRLVEEGLR 424
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
+F+ M +E +L HY C++++L R G+L++A ++ +P E + W +LLG CS
Sbjct: 425 YFELMRKEYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFE-AHASAWGSLLGGCSL 483
Query: 270 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
HGN E+ E V R++ E+E G YVL+ NI A + R+ D LR ++E K GRS
Sbjct: 484 HGNTEIAEVVARQLFELEPQSAGSYVLLSNIYAALDRWADLAHLRDKMNENGIKKICGRS 543
Query: 330 LV 331
+
Sbjct: 544 WI 545
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 127/272 (46%), Gaps = 14/272 (5%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
++++V + K +L AR +F EMP RNVVSWT +I Y + A +F
Sbjct: 139 DKDVVLGTSFVDFYGKCKDLCSARKVFGEMPERNVVSWTALIVAYVKSGELEEAKRMFDL 198
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M E + T A+ + ++GD+ N + + KR ++ +ID YAK
Sbjct: 199 M-----PERNLGTWNALVDGLVKSGDLVNARKLFDEMPKRDIISY-----TSMIDGYAKG 248
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + SA LFE+ ++ +W+++I G+A +G EA + F M +KP+ +
Sbjct: 249 GDMVSARDLFEN--ARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVG 306
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+++ACS G E K + + LIDM + G +++A K+ +P
Sbjct: 307 LMSACSQMGCFELCEKVDSYLHQSMNKFSSHYVIPALIDMNAKCGHMDRAAKLFEEMPQR 366
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
++V + +++ + HG R+ K+++
Sbjct: 367 --DLVSYCSMMEGMAIHGCGSEAVRLFEKMVD 396
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 75/326 (23%), Positives = 131/326 (40%), Gaps = 51/326 (15%)
Query: 39 LFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNG 98
+FE +P W +I GY+ ++L RM+ + P E T V N
Sbjct: 62 VFERVPYPGTYLWNHLIKGYSNKFLFFETVSLLMRMMRTGFARPDEYTFPLVMKVCSNNA 121
Query: 99 DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 158
+ R +HG + GF+ + + +D Y KC + SA K+F ++ +N+VSWT+
Sbjct: 122 EFRVGSTVHGLVLRIGFDK-DVVLGTSFVDFYGKCKDLCSARKVFGEMP--ERNVVSWTA 178
Query: 159 IISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEEC 218
+I + G +EA +RM ++ + N T+ ++++ G + K FD+M +
Sbjct: 179 LIVAYVKSGELEEA----KRMFDLMPERNLGTWNALVDGLVKSGDLVNARKLFDEMPKR- 233
Query: 219 EVLPDIKHYGCLIDMLGRAGRLEQAEKV--------------------ASGIPSEITNV- 257
DI Y +ID + G + A + +G P+E V
Sbjct: 234 ----DIISYTSMIDGYAKGGDMVSARDLFENARGVDVRAWSALILGYAQNGQPNEAFKVF 289
Query: 258 ------------VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
+ L+ ACS G E+ E+V + + + YV+ I
Sbjct: 290 SEMCAKNVKPDEFIMVGLMSACSQMGCFELCEKVDSYLHQSMNKFSSHYVIPALIDMNA- 348
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
+ G +R ++ +E P R LV
Sbjct: 349 KCGHMDRAAKLFEE-----MPQRDLV 369
>gi|225445484|ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 533
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 125/328 (38%), Positives = 193/328 (58%), Gaps = 10/328 (3%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFD +P R++V W MI G K G++E+AR LFE+MP RN +SW+ ++ Y+R+
Sbjct: 171 LFDRIPNRDVVLWTAMIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEV 230
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LFRRM T P+E +++V A G + +H Y ++ F++ I ++ L+
Sbjct: 231 LCLFRRMQEAG-TMPNESVLVSVLTACAHLGALAQGLWVHSYAKQCNFDSNPI-LATALV 288
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y+KCGC+ SAL F+ I K+ +W ++ISG AM+G +++E F +M +P
Sbjct: 289 DMYSKCGCVESALSTFQGI--PNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPT 346
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV- 246
TF++VL AC+H LV+EGLK F++M V P ++HY CL+D++ RAG L +AEK
Sbjct: 347 ETTFVAVLTACTHARLVKEGLKLFEQMSSNYGVEPQLEHYACLVDLMARAGMLAEAEKFI 406
Query: 247 ---ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
G+ N VW +LGAC +GN+E+G RV +K+ +M G +VL YN+
Sbjct: 407 EEKMGGLGRGDAN--VWGAMLGACRTYGNIEVGNRVWKKLADMGVADCGTHVLSYNLYRE 464
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
+A+R+RR++ E K PG S++
Sbjct: 465 AGWDMEAKRVRRLISEAGMKKKPGCSII 492
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 115/276 (41%), Gaps = 44/276 (15%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM-----VACEYTEPSEITI 87
+A +F+ + RN+ + +I GY + A+ + M +A YT P +
Sbjct: 62 FSHACLIFQNLSLRNIFMYNSMIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPP---L 118
Query: 88 LAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS------------------------ 123
+ + + + C L+H + GF+ VS
Sbjct: 119 IKACTTLGSSSKLIGC-LVHAHVVTFGFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPN 177
Query: 124 ------NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
+ID Y K G + A LFED+ +N +SW+++++ ++ G KE + F
Sbjct: 178 RDVVLWTAMIDGYGKMGDVEHARILFEDM--PERNAISWSAVMAAYSRVGDFKEVLCLFR 235
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
RMQ+ PN +SVL AC+H G + +GL + ++C + L+DM +
Sbjct: 236 RMQEAGTMPNESVLVSVLTACAHLGALAQGL-WVHSYAKQCNFDSNPILATALVDMYSKC 294
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
G +E A GIP++ + W ++ + +G+
Sbjct: 295 GCVESALSTFQGIPNK--DAGAWNAMISGVAMNGDA 328
>gi|345505214|gb|AEN99831.1| chlororespiratory reduction 4 [Brassica rapa]
Length = 612
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/359 (36%), Positives = 205/359 (57%), Gaps = 37/359 (10%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM--- 61
+KLFDE+PE++L++WN MI G VK G +E A+ LF+ MP R+VV+W +IDGY ++
Sbjct: 247 AAKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLV 306
Query: 62 ---------------------------NRSN-GALALFRRMVACEYTEPSEITILAVFPA 93
NR + AL +F M + P E +++ V A
Sbjct: 307 HEAKTLFDQMPHRDVVVYNSMMSGXVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSA 366
Query: 94 IWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 153
Q G + +H Y ++ F + + LID Y+KCG I A+++FE I E K++
Sbjct: 367 XAQLGRLSKAIDMHLYIVEKQFPSSG-KLGVALIDMYSKCGSIQHAMRVFEGI--ESKSI 423
Query: 154 VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDK 213
W ++I G A+HG+G+ A + ++++ +KP+ +TF+ VLNACSH GLV+EGL F+
Sbjct: 424 DHWNAMIGGLAVHGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFEL 483
Query: 214 MVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
M + ++ P ++HYGC++D+L R+G +E A+ + G+P E N V+WRT L ACS H
Sbjct: 484 MRRKHKIEPRLQHYGCMVDILARSGSIELAKNLIEGMPIE-PNDVIWRTFLTACSHHKEF 542
Query: 274 EMGERVTRKILEMERGYG-GDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
E GE V + ++ ++ GY YVL+ N+ A + D R+R ++ E+N K PG S +
Sbjct: 543 ETGELVAKHLI-LQAGYNPSSYVLLSNMYASNGMWKDVRRVRTMMKEKNIEKIPGCSWI 600
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 143/287 (49%), Gaps = 24/287 (8%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDGYT-RMNR 63
++FD +P+R+ V++N MI G +K G +E A LF MP RN+++W +I GY R +
Sbjct: 184 QVFDRMPQRDSVSYNSMIDGYLKCGLVESAGELFGLMPREKRNLITWNSMIGGYAQRADG 243
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
N A LF M E I+ ++ ++G + + + + +R + I
Sbjct: 244 VNVAAKLFDEM-----PEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAI--- 295
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
+ID Y K G + A LF+ + +++V + S++SG + EA+E F M+K
Sbjct: 296 --MIDGYGKLGLVHEAKTLFDQMP--HRDVVVYNSMMSGXVQNRYHMEALEVFNHMEKES 351
Query: 184 -LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG-CLIDMLGRAGRLE 241
L P+ + + VL+A + G + + + +VE + P G LIDM + G ++
Sbjct: 352 HLTPDETSLVIVLSAXAQLGRLSKAIDMHLYIVE--KQFPSSGKLGVALIDMYSKCGSIQ 409
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
A +V GI S+ ++ W ++G + HG +GE +L++ER
Sbjct: 410 HAMRVFEGIESK--SIDHWNAMIGGLAVHG---LGESAFDMLLQIER 451
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 109/239 (45%), Gaps = 22/239 (9%)
Query: 34 EYARSLFEEM------PCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP-SEIT 86
E+AR +F E + W +I ++ AL L M+ E P + +
Sbjct: 73 EFARCVFHEHHVSSSGEVEDPFLWNVVIKSHSHGVDPRKALFLLCLML--ENGVPVDKFS 130
Query: 87 ILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI 146
A + G V+ +HG+ K G + + + NCLI Y KCGC+ A ++F+
Sbjct: 131 FSLALKACSRLGFVKEGTQVHGFLIKTGTWS-DLFLQNCLIGLYIKCGCLGFARQVFD-- 187
Query: 147 SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH-GGLVE 205
+ +++ VS+ S+I G+ G+ + A E F M + K N +T+ S++ + V
Sbjct: 188 RMPQRDSVSYNSMIDGYLKCGLVESAGELFGLMPRE--KRNLITWNSMIGGYAQRADGVN 245
Query: 206 EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
K FD+M E+ D+ + +I + GR+E A+ + +P +VV W ++
Sbjct: 246 VAAKLFDEMPEK-----DLISWNSMIGGYVKHGRIEDAKGLFDVMPRR--DVVTWAIMI 297
>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 921
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/323 (36%), Positives = 190/323 (58%), Gaps = 6/323 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++F+ + ++ V+WN I LV+ LE AR +F+ M R+VVSWT II Y + R +
Sbjct: 474 QVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDE 533
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ F+ M+ E+ +P+ + + G + Q IH K G ++ I V+N L
Sbjct: 534 AVEFFKTMLH-EHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELI-VANAL 591
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+ Y KCGC S K+F+ S+E +++ +W + I+G A HG+G+EA++ +E M+ V + P
Sbjct: 592 MSMYFKCGCADSH-KVFD--SMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLP 648
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N VTF+ +LNACSH GLV+EG +FF M + + P ++HY C++D+LGR G ++ AEK
Sbjct: 649 NEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKF 708
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E + V+W LLGAC H N E+G R K+ E G+YV++ NI + +
Sbjct: 709 IYDMPIE-PDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGM 767
Query: 307 YGDAERLRRVVDERNALKFPGRS 329
+ + LR+++ +R K PG S
Sbjct: 768 WVEVAELRKIMKQRGVSKEPGCS 790
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 139/296 (46%), Gaps = 41/296 (13%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LF+++P+ +V+WN MITG ++ G ++ A+ LF+ MP RN +SW G+I GY + RS A
Sbjct: 343 LFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEA 402
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L L + + PS ++ + F A G + + +H K G F+ +V N LI
Sbjct: 403 LDLLQALHR-NGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQ-FNSYVCNALI 460
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
Y KC + ++F + V K+ VSW S I+ + M ++A F+ M L +
Sbjct: 461 SMYGKCRNMEYVRQVFNRMRV--KDTVSWNSFIAALVQNNMLEDARHIFDNM----LSRD 514
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
V++ ++++A + +E ++FF M+ E E P+ L+ + G G + +++
Sbjct: 515 VVSWTTIISAYAQAERGDEAVEFFKTMLHEHEK-PNSPILTILLSVCGGLGSAKLGQQIH 573
Query: 248 S-----GIPSEIT---------------------------NVVVWRTLLGACSFHG 271
+ G+ SE+ ++ W T + C+ HG
Sbjct: 574 TVAIKHGMDSELIVANALMSMYFKCGCADSHKVFDSMEERDIFTWNTFITGCAQHG 629
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 128/268 (47%), Gaps = 14/268 (5%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD +P R++ +WN M+TG ++ A +LF++MP RN+V+WT +I GY R+ +
Sbjct: 147 RLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGK 206
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
+F RM+ E P + +V A+ D+ +++ K GF + + + +
Sbjct: 207 GWDIF-RMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFES-DVVIGTSI 264
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
++ Y + F D VER N +W+++I+ + G A+ + R V P
Sbjct: 265 LNVYTRDASALDIAIKFFDGMVER-NEYTWSTMIAALSHGGRIDAAIAVYGR-DPVKSIP 322
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
++ L+ L C G + E F+++ + P + + +I + G +++A+++
Sbjct: 323 SQTALLTGLARC---GRITEARILFEQIPD-----PIVVSWNAMITGYMQNGMVDEAKEL 374
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVE 274
+P N + W ++ + +G E
Sbjct: 375 FDRMP--FRNTISWAGMIAGYAQNGRSE 400
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 129/278 (46%), Gaps = 24/278 (8%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L++ ++FD +P R+++ WN MI+ G LE AR LF+ + NV + T ++ GY R+
Sbjct: 49 LREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVRTATILLSGYARL 108
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R A +F M E + + A+ QNGD+ + + R ++
Sbjct: 109 GRVLDARRVFDGM-----PERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSW--- 160
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFA---MHGMGKEAVENFER 178
N ++ Y + A LF+ + ++NLV+WT +ISG+ HG G + F
Sbjct: 161 --NSMVTGYCHSRQMVDAWNLFKQMP--QRNLVTWTVMISGYVRIEQHGKGWDI---FRM 213
Query: 179 MQKVVLKPNRVTFLSVLNACSHGGLVEEG-LKFFDKMVEECEVLPDIKHYGCLIDMLGR- 236
M P++ F SVL+A + GL + G L+ +V + D+ ++++ R
Sbjct: 214 MHHEGASPDQSNFASVLSAVT--GLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRD 271
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
A L+ A K G+ N W T++ A S G ++
Sbjct: 272 ASALDIAIKFFDGMVER--NEYTWSTMIAALSHGGRID 307
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 83/354 (23%), Positives = 136/354 (38%), Gaps = 60/354 (16%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
+ + +LFD +P RN ++W MI G + G E A L + + ++ +
Sbjct: 367 MVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFL 426
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
GAL R++ + + I G RN + + ++ FN +
Sbjct: 427 ACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYV-----RQVFNRMRV 481
Query: 121 HVS---NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
+ N I + + A +F+++ +++VSWT+IIS +A G EAVE F+
Sbjct: 482 KDTVSWNSFIAALVQNNMLEDARHIFDNML--SRDVVSWTTIISAYAQAERGDEAVEFFK 539
Query: 178 RMQKVVLKPNRVTFLSVLNACS-----------HGGLVEEGL------------------ 208
M KPN +L+ C H ++ G+
Sbjct: 540 TMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCG 599
Query: 209 -----KFFDKMVEECEVLPDIKHYGCLIDMLGR-AGRLEQAEKVASGIPSEITNVVVWRT 262
K FD M E + GC LGR A ++ + + +P+E+T V
Sbjct: 600 CADSHKVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFV----G 655
Query: 263 LLGACSFHGNVEMGERVTRKILEMERGYG-----GDYVLMYNILAGVWRYGDAE 311
LL ACS G V+ G + + M R YG Y M ++L R GD +
Sbjct: 656 LLNACSHAGLVDEGWQFFKS---MSRDYGLTPLLEHYACMVDLLG---RTGDVQ 703
>gi|413924390|gb|AFW64322.1| hypothetical protein ZEAMMB73_176484 [Zea mays]
Length = 496
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 196/325 (60%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD +P R++VT+N MI+GL++ G ++ A +F+ MP + VSWT +IDG+ + R +
Sbjct: 128 QLFDSMPVRSVVTYNTMISGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDE 187
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ FR M+ + E IT++AV A + G + +H ++ ++ V+N L
Sbjct: 188 AIDCFRAML-LDGVETDYITLVAVVSACAEVGALGLGMWVHRLVLRQRLER-NVRVANSL 245
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YA+CG + A ++F S+ ++ +VSW S+I GFA +G +A+E FE M++ KP
Sbjct: 246 IDMYARCGQVNLAAQVFR--SIRKRTVVSWNSMIVGFAANGRCTDAIELFEEMRRQGFKP 303
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ VT VL ACSH GL E GL+++D M E V ++HYGC++D+LGRAGRL++A V
Sbjct: 304 DAVTLTGVLTACSHAGLTEHGLRYYDLMTTEYGVAARMEHYGCVVDLLGRAGRLDEAMHV 363
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P N VV LL C HGN++M E++ + + E++ +YVL+ NI A V +
Sbjct: 364 VETMPMR-PNEVVLGALLAGCRTHGNLDMAEQMMQHLFELDPQGDANYVLLSNIYAAVGK 422
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ A ++R ++ R K PG S V
Sbjct: 423 WDGAGKVRSLMKARGVKKRPGHSTV 447
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 128/318 (40%), Gaps = 48/318 (15%)
Query: 40 FEEMP---CRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTE-PSEITILAVFPAIW 95
F+ P R+VVSWT I R + A A MV+ P+++T+L V A
Sbjct: 21 FQRAPRHAPRDVVSWTSTISRAARQGDLHAAAASLCAMVSSPAAPAPNDVTLLTVLSACA 80
Query: 96 QNGDVRNCQLIHGYGEKRGFNAF--HIHVSNCLIDTYAKCGCIFSALKLFEDISVER--- 150
+ + R F H+ +S CL Y AL+LF+ + V
Sbjct: 81 DSPSSPLASPLALTLHARALKLFPSHLLLSTCLARFYLASRLPHLALQLFDSMPVRSVVT 140
Query: 151 --------------------------KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
+ VSWT++I GF +G EA++ F M +
Sbjct: 141 YNTMISGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDGV 200
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
+ + +T ++V++AC+ G + G+ + ++V + +++ LIDM R G++ A
Sbjct: 201 ETDYITLVAVVSACAEVGALGLGM-WVHRLVLRQRLERNVRVANSLIDMYARCGQVNLAA 259
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGN----VEMGERVTRKILEMERGYGGDYVLMYNI 300
+V I VV W +++ + +G +E+ E + R+ G+ D V + +
Sbjct: 260 QVFRSIRKR--TVVSWNSMIVGFAANGRCTDAIELFEEMRRQ------GFKPDAVTLTGV 311
Query: 301 LAGVWRYGDAERLRRVVD 318
L G E R D
Sbjct: 312 LTACSHAGLTEHGLRYYD 329
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/330 (36%), Positives = 194/330 (58%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ +F+ + + +V+W MI G + G +E AR LF+EMP R+V W ++ GY +
Sbjct: 275 LELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQN 334
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ A+ALF M + +P+EIT++ + A Q G + +H Y ++ +
Sbjct: 335 KQGKEAIALFHEMQESK-VDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLY-LSVA 392
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ L+D YAKCG I A+ +F++I KN ++WT++I G A HG EA+E F+RM
Sbjct: 393 LGTSLVDMYAKCGNIKKAICIFKEIP--DKNALTWTAMICGLANHGHADEAIEYFQRMID 450
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ L+P+ +TF+ VL+AC H GLV+EG +FF M E+ + +KHY C+ID+LGRAG L+
Sbjct: 451 LGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLD 510
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AE++ + +P + + VVW L AC HGN+ +GE+ K++E++ G YVL+ N+
Sbjct: 511 EAEQLVNTMPMD-PDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMY 569
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A A+++R ++ K PG S +
Sbjct: 570 AEANMRKKADKVRVMMRHLGVEKVPGCSCI 599
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 145/310 (46%), Gaps = 40/310 (12%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVA-CEYTEPSEITILA 89
G + AR LF+E P R+VVSW +I GY R AL LF R+V + P E+T++
Sbjct: 170 GSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIG 229
Query: 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE 149
Q GD+ + +H + + +G + + N ++D Y KCG + A +FE I +
Sbjct: 230 AVSGCAQMGDLELGKRLHEFVDSKGVRCT-VRLMNAVMDMYVKCGSLELAKSVFERI--D 286
Query: 150 RKNLVSWTSIISGFAMHGM-------------------------------GKEAVENFER 178
K +VSWT++I G A GM GKEA+ F
Sbjct: 287 NKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHE 346
Query: 179 MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
MQ+ + PN +T +++L+ACS G +E G+ + ++ ++ + L+DM + G
Sbjct: 347 MQESKVDPNEITMVNLLSACSQLGALEMGM-WVHHYIDRHQLYLSVALGTSLVDMYAKCG 405
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMY 298
+++A + IP + N + W ++ + HG+ + ++++++ G D +
Sbjct: 406 NIKKAICIFKEIPDK--NALTWTAMICGLANHGHADEAIEYFQRMIDL--GLQPDEITFI 461
Query: 299 NILAGVWRYG 308
+L+ G
Sbjct: 462 GVLSACCHAG 471
>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
Length = 897
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/322 (38%), Positives = 189/322 (58%), Gaps = 7/322 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYTRMNRSNGALALF 71
+ +L+ +N +I K + ARS+F+++P RNVV+WT +I G+ + SN AL LF
Sbjct: 450 DEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLF 509
Query: 72 RRMVACEY-TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG-FNAFHIHVSNCLIDT 129
M++ Y P+ TI + A +R + IH Y + + + V+NCLID
Sbjct: 510 VEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDM 569
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
Y+KCG + +A +F+ +S +K+ +SWTS+++G+ MHG G EA++ F++M+K P+ +
Sbjct: 570 YSKCGDVDTARHVFDSMS--QKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDI 627
Query: 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
TFL VL ACSH G+V++GL +FD M + + P +HY C ID+L R+GRL++A +
Sbjct: 628 TFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKD 687
Query: 250 IPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGD 309
+P E T VVW LL AC H NVE+ E K++EM G Y L+ NI A R+ D
Sbjct: 688 MPMEPT-AVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKD 746
Query: 310 AERLRRVVDERNALKFPGRSLV 331
R+R ++ + K PG S V
Sbjct: 747 VARIRHLMKKSGIKKRPGCSWV 768
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 140/287 (48%), Gaps = 19/287 (6%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRN----VVSWTGIID 56
+++ K+F+ + +++V+WN M+ G + G E A LF+ M N VV+WT +I
Sbjct: 322 LMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIA 381
Query: 57 GYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF- 115
GY++ S+ AL LFR+M+ + P+ +TI++V A G IH Y K
Sbjct: 382 GYSQRGCSHEALNLFRQMIF-SGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLL 440
Query: 116 ---NAF-----HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 167
N F + V N LID Y+KC +A +F+DI +E +N+V+WT +I G A +G
Sbjct: 441 TLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYG 500
Query: 168 MGKEAVENFERM--QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIK 225
+A++ F M + + PN T +L AC+H + G + ++
Sbjct: 501 DSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAY 560
Query: 226 HYG-CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
CLIDM + G ++ A V + + + + W +++ HG
Sbjct: 561 FVANCLIDMYSKCGDVDTARHVFDSMSQK--SAISWTSMMTGYGMHG 605
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 140/311 (45%), Gaps = 55/311 (17%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCR---NVVSWTGIIDGYTRMNRSNGALAL 70
E N+ N ++ + G LE A +F+E+ R +V+SW I+ + + + + AL L
Sbjct: 194 ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDL 253
Query: 71 FRRMVACEYTEPSE-----ITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
F +M + +P+ I+I+ + PA V + +HG + G + V N
Sbjct: 254 FSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNG-TFPDVFVGNA 312
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
LID YAKCG + +A+K+F +E K++VSW ++++G++ G + A E F+ M+K +
Sbjct: 313 LIDAYAKCGLMENAVKVFN--MMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIP 370
Query: 186 -----------------------------------PNRVTFLSVLNACSHGGLVEEGLKF 210
PN VT +SVL+AC+ G +G +
Sbjct: 371 LDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEI 430
Query: 211 FDKMVEECEVL---------PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWR 261
++ C + D+ Y LIDM + + A + IP E NVV W
Sbjct: 431 HAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWT 490
Query: 262 TLLGACSFHGN 272
++G + +G+
Sbjct: 491 VMIGGHAQYGD 501
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 119/274 (43%), Gaps = 16/274 (5%)
Query: 12 LPERNLVTWNVMITGLVK----WGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LP ++ + TG+V G +YA + E + V W +I + + R + A
Sbjct: 87 LPSEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSA 146
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
+ + RM+ T P T+ V A + R HG GF + ++ + N L+
Sbjct: 147 INVSCRMLRAG-TRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFES-NVFICNALV 204
Query: 128 DTYAKCGCIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL-K 185
Y++CG + A +F++I+ +++SW SI+S A++ F +M +V K
Sbjct: 205 AMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEK 264
Query: 186 PNR-----VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
P ++ +++L AC V + + + PD+ LID + G +
Sbjct: 265 PTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRN-GTFPDVFVGNALIDAYAKCGLM 323
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
E A KV + + E +VV W ++ S GN E
Sbjct: 324 ENAVKVFNMM--EFKDVVSWNAMVAGYSQSGNFE 355
>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 766
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 131/361 (36%), Positives = 193/361 (53%), Gaps = 34/361 (9%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L + FDE+PE+N V++N MI G V+ +++ AR LFE MPCRN+ SW +I GY +
Sbjct: 281 MLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQ 340
Query: 61 MNRSNGALALFRRM----------VACEYTEPSEIT-ILAVFPAIWQNGDVRN-----CQ 104
+ A F M + Y + L +F I Q+G+ N C
Sbjct: 341 IGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCA 400
Query: 105 L--------------IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
L IHG K G+ V N L+ Y KCG I A FE I E
Sbjct: 401 LSTCADIAALELGKQIHGQAVKMGYGT-GCFVGNALLAMYFKCGSIDEANDTFEGI--EE 457
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
K++VSW ++++G+A HG G++A+ FE M+ +KP+ +T + VL+ACSH GL++ G ++
Sbjct: 458 KDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEY 517
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
F M ++ V+P KHY C+ID+LGRAGRLE+A+ + +P + W LLGA H
Sbjct: 518 FYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQ-PGAASWGALLGASRIH 576
Query: 271 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSL 330
GN E+GE+ + +ME G YVL+ N+ A R+ DA+++R + + K PG S
Sbjct: 577 GNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSW 636
Query: 331 V 331
V
Sbjct: 637 V 637
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 131/277 (47%), Gaps = 29/277 (10%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D LFD++P R+ ++WN MI+G + G L AR LF+E P R+V +WT ++ GY +
Sbjct: 220 LGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQN 279
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ A F M E +E++ A+ Q + + + R +++
Sbjct: 280 GMLDEAKTFFDEM-----PEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSW--- 331
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
N +I Y + G I A K F+ + +++ VSW +II+G+A G +EA+ F +++
Sbjct: 332 --NTMITGYGQIGDIAQARKFFD--MMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQ 387
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG-------CLIDML 234
NR TF L+ C+ +E G + + V+ YG L+ M
Sbjct: 388 DGESLNRATFGCALSTCADIAALELGKQIHGQAVK--------MGYGTGCFVGNALLAMY 439
Query: 235 GRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ G +++A GI E +VV W T+L + HG
Sbjct: 440 FKCGSIDEANDTFEGI--EEKDVVSWNTMLAGYARHG 474
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 136/281 (48%), Gaps = 31/281 (11%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFD++PER+L +WNVM+TG V+ L AR LF+ MP ++VVSW ++ GY + + A
Sbjct: 102 LFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEA 161
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
+F M E + I+ + A NG + L+ + K ++ NCL+
Sbjct: 162 REVFDNM-----PEKNSISWNGLLAAYVHNGRIEEACLL--FESKSDWDLISW---NCLM 211
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
+ + + A LF+ + V ++ +SW ++ISG+A G +A F+ P
Sbjct: 212 GGFVRKKKLGDARWLFDKMPV--RDAISWNTMISGYAQGGGLSQARRLFDE------SPT 263
Query: 188 R--VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
R T+ ++++ G+++E FFD+M E+ EV Y +I + +++ A +
Sbjct: 264 RDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEV-----SYNAMIAGYVQTKKMDIARE 318
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM 286
+ +P N+ W T++ G++ RK +M
Sbjct: 319 LFESMPCR--NISSWNTMITGYGQIGDIAQA----RKFFDM 353
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 132/278 (47%), Gaps = 33/278 (11%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D +LFD +PE+++V+WN +++G + G ++ AR +F+ MP +N +SW G++ Y
Sbjct: 127 LGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHN 186
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R A LF ++ S ++ F + GD R F+ +
Sbjct: 187 GRIEEACLLFES--KSDWDLISWNCLMGGFVRKKKLGDARWL-----------FDKMPVR 233
Query: 122 VS---NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER 178
+ N +I YA+ G + A +LF++ +++ +WT+++SG+ +GM EA F+
Sbjct: 234 DAISWNTMISGYAQGGGLSQARRLFDESPT--RDVFTWTAMVSGYVQNGMLDEAKTFFDE 291
Query: 179 MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP--DIKHYGCLIDMLGR 236
M + N V++ +++ G V+ K D E E +P +I + +I G+
Sbjct: 292 MP----EKNEVSYNAMI-----AGYVQ--TKKMDIARELFESMPCRNISSWNTMITGYGQ 340
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
G + QA K +P + V W ++ + G+ E
Sbjct: 341 IGDIAQARKFFDMMPQR--DCVSWAAIIAGYAQSGHYE 376
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 117/268 (43%), Gaps = 54/268 (20%)
Query: 12 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALF 71
+ + +++ WN I+ ++ G + A +F MP R+ VS+ +I GY R ++ N A LF
Sbjct: 44 VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF 103
Query: 72 RRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYA 131
+M E + + + G VRNC+L G+ R
Sbjct: 104 DQM--------PERDLFSW--NVMLTGYVRNCRL----GDAR------------------ 131
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191
+LF+ + K++VSW S++SG+A +G EA E F+ M + N +++
Sbjct: 132 ---------RLFD--LMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMP----EKNSISW 176
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
+L A H G +EE F E + D+ + CL+ R +L A + +P
Sbjct: 177 NGLLAAYVHNGRIEEACLLF-----ESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMP 231
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERV 279
+ + + W T++ + G + R+
Sbjct: 232 --VRDAISWNTMISGYAQGGGLSQARRL 257
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/330 (36%), Positives = 190/330 (57%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ +F+ + R +V+W MI G K+G ++ AR +F+EMP R+V W ++ GY +
Sbjct: 279 LEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQC 338
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ AL+LF M P EIT++ + A Q G + +H Y EK F +
Sbjct: 339 KQCKEALSLFHEMQEASVV-PDEITMVNLLTACSQLGALEMGMWVHRYIEKHRL-VFSVA 396
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LID YAKCG I A+ +F++I KN ++WT++I G A HG EA+E+F M +
Sbjct: 397 LGTSLIDMYAKCGNIEKAIHIFKEIP--EKNALTWTAMICGLANHGHANEAIEHFRTMIE 454
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ KP+ +TF+ VL+AC H GLV+EG +FF M + + +KHY C+ID+LGRAG L+
Sbjct: 455 LGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLD 514
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AE++ + +P E + VVW + AC GN+ +GE+ K++E++ G YVL+ N+
Sbjct: 515 EAEQLVNTMPME-PDAVVWGAIFFACRMQGNISLGEKAAMKLVEIDPSDSGIYVLLANMY 573
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A A+++R ++ K PG S +
Sbjct: 574 AEANMRKKADKVRAMMRHLGVEKVPGCSCI 603
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 146/310 (47%), Gaps = 40/310 (12%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACE-YTEPSEITILA 89
G +E AR LF+ P R++VSW +I GY R AL LF RMVA + P E+T++A
Sbjct: 174 GPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIA 233
Query: 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE 149
Q D+ + +HG+ + G + + + N L+D Y KCG + A +FE I E
Sbjct: 234 AVSGCGQMRDLELGRRLHGFVDSDGVSCT-VRLMNALMDMYIKCGSLEMAKSVFERI--E 290
Query: 150 RKNLVSWTSIISGFAMHGM-------------------------------GKEAVENFER 178
+ +VSWT++I GFA G+ KEA+ F
Sbjct: 291 HRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHE 350
Query: 179 MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
MQ+ + P+ +T +++L ACS G +E G+ + + +E+ ++ + LIDM + G
Sbjct: 351 MQEASVVPDEITMVNLLTACSQLGALEMGM-WVHRYIEKHRLVFSVALGTSLIDMYAKCG 409
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMY 298
+E+A + IP + N + W ++ + HG+ R ++E+ G D +
Sbjct: 410 NIEKAIHIFKEIPEK--NALTWTAMICGLANHGHANEAIEHFRTMIEL--GQKPDEITFI 465
Query: 299 NILAGVWRYG 308
+L+ G
Sbjct: 466 GVLSACCHAG 475
>gi|345505228|gb|AEN99838.1| chlororespiratory reduction 4, partial [Matthiola incana]
Length = 584
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/333 (36%), Positives = 195/333 (58%), Gaps = 10/333 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D LFD +P +++VTW MI G K G + A+ LF+EMP R+VV++ ++ GY +
Sbjct: 240 IEDAKSLFDLMPRKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQRDVVAYNSMMAGYVQN 299
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI- 120
A+ +F M + P E T++ V AI Q G + IH Y N F +
Sbjct: 300 KYHAEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMD---NKFRLG 356
Query: 121 -HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+ LIDTY+KCG I ++++FE+I E K++ W ++I G A+HG+G+ A + ++
Sbjct: 357 GKLGVALIDTYSKCGSIQKSMRVFEEI--ENKSIDHWNAMIGGLAIHGLGESAFDMLLQI 414
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+K +KP+ +TF+ VLNACSH GLV+EGL F+ M + ++ P ++HYGC++D+L R+G
Sbjct: 415 EKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCMVDILSRSGS 474
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG-GDYVLMY 298
+E A+ + +P E N V+WRT L ACS H E GE V + + ++ GY +VL+
Sbjct: 475 IELAKNLIEEMPIE-PNDVIWRTFLTACSNHKEFETGELVAKHLF-LQGGYNPSSFVLLS 532
Query: 299 NILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
N+ A + + R+R + ER K PG S +
Sbjct: 533 NMYASFGMWKEVRRVRTTMKERKLRKIPGCSWI 565
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 145/286 (50%), Gaps = 22/286 (7%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDGYTRMNRS 64
++FD +P+R+ V++N MI G VK G +E AR LF+ MP +N++SW +I GYT+
Sbjct: 149 QVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPREKKNLISWNCMISGYTQSEDG 208
Query: 65 -NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
N A LF M E I+ ++ ++ + + + + ++ +
Sbjct: 209 VNVASKLFDEM-----PEKDLISWNSLIDGYVKHRRIEDAKSLFDLMPRKDVVTW----- 258
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
+ID YAK G + A KLF+++ ++++V++ S+++G+ + EA+ F M+K
Sbjct: 259 ATMIDGYAKLGFVHQAKKLFDEMP--QRDVVAYNSMMAGYVQNKYHAEAIGIFNDMEKES 316
Query: 184 -LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
L P+ T + VL+A + G + + + +++ L K LID + G +++
Sbjct: 317 HLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGG-KLGVALIDTYSKCGSIQK 375
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
+ +V I E ++ W ++G + HG +GE +L++E+
Sbjct: 376 SMRVFEEI--ENKSIDHWNAMIGGLAIHG---LGESAFDMLLQIEK 416
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 121/256 (47%), Gaps = 26/256 (10%)
Query: 34 EYARSLFEEMPC------RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITI 87
E+AR +F E + W +I ++ AL LF M+ + +I
Sbjct: 38 EFARCIFHEYHVSSYSVEEDPFLWNAVIKSFSHGVDPRNALLLFCLMIE-NSVSVDKFSI 96
Query: 88 LAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS 147
V A + G V +HG+ K G + + + NCLI Y KCGC+ A ++F+
Sbjct: 97 SLVLKACSRLGFVDFGMQVHGFLRKTGIYS-DLFLQNCLIGLYLKCGCLGFARQVFD--R 153
Query: 148 VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEG 207
+ +++ VS+ S+I G+ G+ + A E F+ M + K N +++ +++ + E+G
Sbjct: 154 MPQRDSVSYNSMIDGYVKCGLIESARELFDLMPRE--KKNLISWNCMISGYTQS---EDG 208
Query: 208 L----KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTL 263
+ K FD+M E+ D+ + LID + R+E A+ + +P + +VV W T+
Sbjct: 209 VNVASKLFDEMPEK-----DLISWNSLIDGYVKHRRIEDAKSLFDLMPRK--DVVTWATM 261
Query: 264 LGACSFHGNVEMGERV 279
+ + G V +++
Sbjct: 262 IDGYAKLGFVHQAKKL 277
>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g18750, chloroplastic; Flags: Precursor
gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 121/335 (36%), Positives = 195/335 (58%), Gaps = 8/335 (2%)
Query: 1 FLKDGSKLFDELPERNL----VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIID 56
L +G ++ + + E +L N ++ K G ++ A +F EM ++++SW II
Sbjct: 412 LLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIG 471
Query: 57 GYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN 116
GY++ +N AL+LF ++ + P E T+ V PA + IHGY + G+
Sbjct: 472 GYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYF 531
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
+ HV+N L+D YAKCG + A LF+DI+ K+LVSWT +I+G+ MHG GKEA+ F
Sbjct: 532 SDR-HVANSLVDMYAKCGALLLAHMLFDDIA--SKDLVSWTVMIAGYGMHGFGKEAIALF 588
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
+M++ ++ + ++F+S+L ACSH GLV+EG +FF+ M EC++ P ++HY C++DML R
Sbjct: 589 NQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLAR 648
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
G L +A + +P + +W LL C H +V++ E+V K+ E+E G YVL
Sbjct: 649 TGDLIKAYRFIENMPIP-PDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVL 707
Query: 297 MYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
M NI A ++ +RLR+ + +R K PG S +
Sbjct: 708 MANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWI 742
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 143/255 (56%), Gaps = 8/255 (3%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
ERN V N ++ +K ++ AR +F+EM R+V+SW II+GY + L++F +
Sbjct: 228 ERNSVG-NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQ 286
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M+ E TI++VF + + + +H G K F+ N L+D Y+KC
Sbjct: 287 MLV-SGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSR-EDRFCNTLLDMYSKC 344
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + SA +F ++S +++VS+TS+I+G+A G+ EAV+ FE M++ + P+ T +
Sbjct: 345 GDLDSAKAVFREMS--DRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTA 402
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VLN C+ L++EG K + ++E ++ DI L+DM + G +++AE V S +
Sbjct: 403 VLNCCARYRLLDEG-KRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEM--R 459
Query: 254 ITNVVVWRTLLGACS 268
+ +++ W T++G S
Sbjct: 460 VKDIISWNTIIGGYS 474
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 106/216 (49%), Gaps = 5/216 (2%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G+L+ A +F+E+ + W +++ + +G++ LF++M++ E T V
Sbjct: 143 GDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMS-SGVEMDSYTFSCV 201
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
+ V + +HG+ K GF + V N L+ Y K + SA K+F++++
Sbjct: 202 SKSFSSLRSVHGGEQLHGFILKSGFGERN-SVGNSLVAFYLKNQRVDSARKVFDEMT--E 258
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
++++SW SII+G+ +G+ ++ + F +M ++ + T +SV C+ L+ G
Sbjct: 259 RDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAV 318
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
V+ C D + L+DM + G L+ A+ V
Sbjct: 319 HSIGVKACFSRED-RFCNTLLDMYSKCGDLDSAKAV 353
>gi|224119882|ref|XP_002318186.1| predicted protein [Populus trichocarpa]
gi|222858859|gb|EEE96406.1| predicted protein [Populus trichocarpa]
Length = 537
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/329 (37%), Positives = 191/329 (58%), Gaps = 6/329 (1%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
D K+FDE P+R++V++NV+I G VK G++ AR LF+ MP R+ VSW II G + +
Sbjct: 177 DAYKVFDESPQRDVVSYNVLIDGFVKAGDVVKARELFDLMPVRDSVSWNTIIAGCAKGDY 236
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
A+ LF M+ E P + +++ A Q G++ + IH Y E+ +S
Sbjct: 237 CEEAIELFDFMMDLE-IRPDNVALVSTLSACAQLGELEKGKKIHDYIERNAMKV-DTFLS 294
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
L+D YAKCGC+ ALK+F+ S KNL +W +++ G AMHG G+ +E F RM +
Sbjct: 295 TGLVDFYAKCGCVDIALKIFD--SSSDKNLFTWNAMLVGLAMHGYGELLLEYFSRMIEAG 352
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
+KP+ ++ L VL CSH GLV+E K FD+M V + KHYGC+ D+LGRAG +++
Sbjct: 353 VKPDGISILGVLVGCSHSGLVDEARKLFDEMESVYGVPREPKHYGCMADLLGRAGLIKKV 412
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
++ +P ++ VW LLG C HG+VE+ E+ + ++E++ GG Y ++ N+ A
Sbjct: 413 MEMIKDMPRG-GDMSVWSGLLGGCRIHGDVEIAEKAAKHLMELKPDDGGVYSILANVYAN 471
Query: 304 VWRYGDAERLRRVVDE-RNALKFPGRSLV 331
R+ D +RR + R K G SL+
Sbjct: 472 AERWEDVMNIRRSLSSNRVVTKIAGFSLI 500
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 138/322 (42%), Gaps = 40/322 (12%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
L YA+S+F + + + II +T ++ AL F +M S +
Sbjct: 74 LHYAKSIFNSIQNPSTFCYNTIIRVHTLLSFPIPALHFFTQMRRLSVPLDSH-SFPFTLK 132
Query: 93 AIWQNGDV-----RNCQ---------------LIHGY----GEKRGFNAF------HIHV 122
A Q G V +CQ LIHGY + F +
Sbjct: 133 ACAQLGGVFSARCLHCQVLKFGFLSDLYVMNSLIHGYMVSDMSNDAYKVFDESPQRDVVS 192
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
N LID + K G + A +LF+ + V ++ VSW +II+G A +EA+E F+ M +
Sbjct: 193 YNVLIDGFVKAGDVVKARELFDLMPV--RDSVSWNTIIAGCAKGDYCEEAIELFDFMMDL 250
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
++P+ V +S L+AC+ G +E+G K D +E + D L+D + G ++
Sbjct: 251 EIRPDNVALVSTLSACAQLGELEKGKKIHD-YIERNAMKVDTFLSTGLVDFYAKCGCVDI 309
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVE-MGERVTRKILEMERGYGGDYVLMYNIL 301
A K+ S N+ W +L + HG E + E +R I E G D + + +L
Sbjct: 310 ALKIFDS--SSDKNLFTWNAMLVGLAMHGYGELLLEYFSRMI---EAGVKPDGISILGVL 364
Query: 302 AGVWRYGDAERLRRVVDERNAL 323
G G + R++ DE ++
Sbjct: 365 VGCSHSGLVDEARKLFDEMESV 386
>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
Length = 720
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 121/335 (36%), Positives = 195/335 (58%), Gaps = 8/335 (2%)
Query: 1 FLKDGSKLFDELPERNL----VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIID 56
L +G ++ + + E +L N ++ K G ++ A +F EM ++++SW II
Sbjct: 261 LLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIG 320
Query: 57 GYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN 116
GY++ +N AL+LF ++ + P E T+ V PA + IHGY + G+
Sbjct: 321 GYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYF 380
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
+ HV+N L+D YAKCG + A LF+DI+ K+LVSWT +I+G+ MHG GKEA+ F
Sbjct: 381 SDR-HVANSLVDMYAKCGALLLAHMLFDDIA--SKDLVSWTVMIAGYGMHGFGKEAIALF 437
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
+M++ ++ + ++F+S+L ACSH GLV+EG +FF+ M EC++ P ++HY C++DML R
Sbjct: 438 NQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLAR 497
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
G L +A + +P + +W LL C H +V++ E+V K+ E+E G YVL
Sbjct: 498 TGDLIKAYRFIENMPIP-PDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVL 556
Query: 297 MYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
M NI A ++ +RLR+ + +R K PG S +
Sbjct: 557 MANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWI 591
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 143/255 (56%), Gaps = 8/255 (3%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
ERN V N ++ +K ++ AR +F+EM R+V+SW II+GY + L++F +
Sbjct: 77 ERNSVG-NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQ 135
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M+ E TI++VF + + + +H G K F+ N L+D Y+KC
Sbjct: 136 MLV-SGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSR-EDRFCNTLLDMYSKC 193
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + SA +F ++S +++VS+TS+I+G+A G+ EAV+ FE M++ + P+ T +
Sbjct: 194 GDLDSAKAVFREMS--DRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTA 251
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VLN C+ L++EG K + ++E ++ DI L+DM + G +++AE V S +
Sbjct: 252 VLNCCARYRLLDEG-KRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEM--R 308
Query: 254 ITNVVVWRTLLGACS 268
+ +++ W T++G S
Sbjct: 309 VKDIISWNTIIGGYS 323
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 100/207 (48%), Gaps = 5/207 (2%)
Query: 40 FEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGD 99
F+E+ + W +++ + +G++ LF++M++ E T V +
Sbjct: 1 FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMS-SGVEMDSYTFSCVSKSFSSLRS 59
Query: 100 VRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 159
V + +HG+ K GF + V N L+ Y K + SA K+F++++ ++++SW SI
Sbjct: 60 VHGGEQLHGFILKSGFGERN-SVGNSLVAFYLKNQRVDSARKVFDEMT--ERDVISWNSI 116
Query: 160 ISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECE 219
I+G+ +G+ ++ + F +M ++ + T +SV C+ L+ G V+ C
Sbjct: 117 INGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACF 176
Query: 220 VLPDIKHYGCLIDMLGRAGRLEQAEKV 246
D + L+DM + G L+ A+ V
Sbjct: 177 SRED-RFCNTLLDMYSKCGDLDSAKAV 202
>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 980
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 131/360 (36%), Positives = 193/360 (53%), Gaps = 34/360 (9%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + FDE+PE+N V++N MI G V+ +++ AR LFE MPCRN+ SW +I GY ++
Sbjct: 282 LDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQI 341
Query: 62 NRSNGALALFRRM----------VACEYTEPSEIT-ILAVFPAIWQNGDVRN-----CQL 105
A F M + Y + L +F I Q+G+ N C L
Sbjct: 342 GDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCAL 401
Query: 106 --------------IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151
IHG K G+ V N L+ Y KCG I A FE I E K
Sbjct: 402 STCADIAALELGKQIHGQAVKMGYGT-GCFVGNALLAMYFKCGSIDEANDTFEGI--EEK 458
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
++VSW ++++G+A HG G++A+ FE M+ +KP+ +T + VL+ACSH GL++ G ++F
Sbjct: 459 DVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYF 518
Query: 212 DKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
M ++ V+P KHY C+ID+LGRAGRLE+A+ + +P + W LLGA HG
Sbjct: 519 YSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQ-PGAASWGALLGASRIHG 577
Query: 272 NVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
N E+GE+ + +ME G YVL+ N+ A R+ DA+++R + + K PG S V
Sbjct: 578 NTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWV 637
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 131/277 (47%), Gaps = 29/277 (10%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D LFD++P R+ ++WN MI+G + G L AR LF+E P R+V +WT ++ GY +
Sbjct: 220 LGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQN 279
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ A F M E +E++ A+ Q + + + R +++
Sbjct: 280 GMLDEAKTFFDEM-----PEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSW--- 331
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
N +I Y + G I A K F+ + +++ VSW +II+G+A G +EA+ F +++
Sbjct: 332 --NTMITGYGQIGDIAQARKFFD--MMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQ 387
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG-------CLIDML 234
NR TF L+ C+ +E G + + V+ YG L+ M
Sbjct: 388 DGESLNRATFGCALSTCADIAALELGKQIHGQAVK--------MGYGTGCFVGNALLAMY 439
Query: 235 GRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ G +++A GI E +VV W T+L + HG
Sbjct: 440 FKCGSIDEANDTFEGI--EEKDVVSWNTMLAGYARHG 474
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 136/281 (48%), Gaps = 31/281 (11%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFD++PER+L +WNVM+TG V+ L AR LF+ MP ++VVSW ++ GY + + A
Sbjct: 102 LFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEA 161
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
+F M E + I+ + A NG + L+ + K ++ NCL+
Sbjct: 162 REVFDNM-----PEKNSISWNGLLAAYVHNGRIEEACLL--FESKSDWDLISW---NCLM 211
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
+ + + A LF+ + V ++ +SW ++ISG+A G +A F+ P
Sbjct: 212 GGFVRKKKLGDARWLFDKMPV--RDAISWNTMISGYAQGGGLSQARRLFDE------SPT 263
Query: 188 R--VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
R T+ ++++ G+++E FFD+M E+ EV Y +I + +++ A +
Sbjct: 264 RDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEV-----SYNAMIAGYVQTKKMDIARE 318
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM 286
+ +P N+ W T++ G++ RK +M
Sbjct: 319 LFESMPCR--NISSWNTMITGYGQIGDIAQA----RKFFDM 353
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 132/278 (47%), Gaps = 33/278 (11%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D +LFD +PE+++V+WN +++G + G ++ AR +F+ MP +N +SW G++ Y
Sbjct: 127 LGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHN 186
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R A LF ++ S ++ F + GD R F+ +
Sbjct: 187 GRIEEACLLFES--KSDWDLISWNCLMGGFVRKKKLGDARWL-----------FDKMPVR 233
Query: 122 VS---NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER 178
+ N +I YA+ G + A +LF++ +++ +WT+++SG+ +GM EA F+
Sbjct: 234 DAISWNTMISGYAQGGGLSQARRLFDESPT--RDVFTWTAMVSGYVQNGMLDEAKTFFDE 291
Query: 179 MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP--DIKHYGCLIDMLGR 236
M + N V++ +++ G V+ K D E E +P +I + +I G+
Sbjct: 292 MP----EKNEVSYNAMI-----AGYVQ--TKKMDIARELFESMPCRNISSWNTMITGYGQ 340
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
G + QA K +P + V W ++ + G+ E
Sbjct: 341 IGDIAQARKFFDMMPQR--DCVSWAAIIAGYAQSGHYE 376
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 117/268 (43%), Gaps = 54/268 (20%)
Query: 12 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALF 71
+ + +++ WN I+ ++ G + A +F MP R+ VS+ +I GY R ++ N A LF
Sbjct: 44 VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF 103
Query: 72 RRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYA 131
+M E + + + G VRNC+L G+ R
Sbjct: 104 DQM--------PERDLFSW--NVMLTGYVRNCRL----GDAR------------------ 131
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191
+LF+ + K++VSW S++SG+A +G EA E F+ M + N +++
Sbjct: 132 ---------RLFD--LMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMP----EKNSISW 176
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
+L A H G +EE F E + D+ + CL+ R +L A + +P
Sbjct: 177 NGLLAAYVHNGRIEEACLLF-----ESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMP 231
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERV 279
+ + + W T++ + G + R+
Sbjct: 232 --VRDAISWNTMISGYAQGGGLSQARRL 257
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 18/87 (20%)
Query: 200 HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVV 259
+ GL++ G ++F M EE V P KHY C+ID+LGR RLE+
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEEG---------------- 819
Query: 260 WRTLLGACSFHGNVEMGERVTRKILEM 286
LLGA HGN E+GE+ + +M
Sbjct: 820 --ALLGASRIHGNTELGEKAAQMFFKM 844
>gi|115476560|ref|NP_001061876.1| Os08g0434000 [Oryza sativa Japonica Group]
gi|42407498|dbj|BAD10615.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|42409483|dbj|BAD09839.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113623845|dbj|BAF23790.1| Os08g0434000 [Oryza sativa Japonica Group]
Length = 601
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 117/320 (36%), Positives = 186/320 (58%), Gaps = 6/320 (1%)
Query: 13 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFR 72
P+ L T +++ G+ + AR +F+EMP R+ ++W +I YTR R+ AL LF
Sbjct: 158 PDALLAT--SLVSSYAACGDGDSARKVFDEMPVRDTIAWNVLITCYTRNRRTKDALKLFD 215
Query: 73 RMVACEY-TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYA 131
M E EP ++T + + A G + + + Y G+ + V N LI Y
Sbjct: 216 AMRGGENGAEPDDVTCILLLQACTSLGALDFGEKVWEYAVDHGYGG-ELKVRNSLITMYT 274
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191
KCGC+ A ++F +K++V+W+++ISG A +G GK+A+ FE M + + P+ TF
Sbjct: 275 KCGCVDKAYQVF--CETPKKSVVTWSAMISGLASNGFGKDAISAFEEMGRSGVAPDEQTF 332
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
VL+ACSH GLV+EG KFFD M E ++ P++ HYGC++D++GRAG L+QA ++
Sbjct: 333 TGVLSACSHSGLVDEGFKFFDIMCYEYQLKPNVHHYGCMVDLMGRAGLLDQAYELVVKDM 392
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
+ +WRTLLGAC HG++++GERV ++E++ GDYVL+ N A V +G
Sbjct: 393 RVAPDATIWRTLLGACRIHGHIDLGERVINHLIELKAQQAGDYVLLLNTYAAVEDWGKVA 452
Query: 312 RLRRVVDERNALKFPGRSLV 331
+R+++ E+ PG + V
Sbjct: 453 EVRKLMKEKGIQTTPGCTTV 472
>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
Length = 588
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 125/332 (37%), Positives = 198/332 (59%), Gaps = 8/332 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D LF +P R++VTW MI G K G + A++LF++MP R+VV++ ++ GY +
Sbjct: 243 MEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQN 302
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY-GEKRGFNAFHI 120
+ AL +F M + P E T++ V AI Q G + +H Y EK+ F +
Sbjct: 303 KYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKL 362
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V+ LID Y+KCG I A+ +FE I E K++ W ++I G A+HG+G+ A + ++
Sbjct: 363 GVA--LIDMYSKCGSIQQAMLVFERI--ENKSIDHWNAMIGGLAIHGLGESAFDMLLEIE 418
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ +KP+ +TF+ +LNACSH GLV+EGL F+ M + ++ P ++HYGC++D+L R+G +
Sbjct: 419 RRSIKPDDITFVGILNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSI 478
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG-GDYVLMYN 299
E A+ + +P E N V+WRT L ACS H E GE V + ++ ++ GY YVL+ N
Sbjct: 479 ELAKNLIEEMPME-PNDVIWRTFLTACSHHKEFETGEVVAKHLI-LQAGYNPSSYVLLSN 536
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ A + DA R+R ++ ER K PG S +
Sbjct: 537 MYASFGMWKDARRVRTMMKERELQKVPGCSWI 568
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 144/286 (50%), Gaps = 22/286 (7%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDGYTRMNRS 64
++FD +P+R+ V++N MI G VK G + AR LF+ MP +N++SW +I GY + +
Sbjct: 152 QIFDRMPQRDSVSYNSMIDGYVKCGLIGSARELFDLMPKEMKNLISWNSMISGYAQTSDG 211
Query: 65 -NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
N A LF E E I+ ++ ++G + + + + +R +
Sbjct: 212 VNIASKLF-----AEMPEKDLISWNSLIDGYVKHGRMEDAKDLFYVMPRRDVVTW----- 261
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
+ID YAK G + A LF+ + +++V++ S+++G+ + EA+E F M+K
Sbjct: 262 ATMIDGYAKLGFVHKAKTLFDQMP--HRDVVAYNSMMAGYVQNKYNMEALEIFSDMEKES 319
Query: 184 -LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
L P+ T + VL+A + G + + + +VE+ L K LIDM + G ++Q
Sbjct: 320 HLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGG-KLGVALIDMYSKCGSIQQ 378
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
A V I E ++ W ++G + HG +GE +LE+ER
Sbjct: 379 AMLVFERI--ENKSIDHWNAMIGGLAIHG---LGESAFDMLLEIER 419
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 14/215 (6%)
Query: 51 WTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYG 110
W +I ++ AL F M+ + ++ V A + G V+ IHG+
Sbjct: 64 WNAVIKSHSHGVDPKRALIWFCLMLE-NGVSVDKFSLSLVLKACSRLGFVQEGMQIHGFL 122
Query: 111 EKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 170
K G + + + NCLI Y KCGC+ A ++F+ + +++ VS+ S+I G+ G+
Sbjct: 123 RKTGIWS-DLFLQNCLIGLYLKCGCLGFARQIFD--RMPQRDSVSYNSMIDGYVKCGLIG 179
Query: 171 EAVENFERMQKVVLKPNRVTFLSVLNACSHGGL-VEEGLKFFDKMVEECEVLPDIKHYGC 229
A E F+ M K + N +++ S+++ + V K F +M E+ D+ +
Sbjct: 180 SARELFDLMPKEM--KNLISWNSMISGYAQTSDGVNIASKLFAEMPEK-----DLISWNS 232
Query: 230 LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
LID + GR+E A+ + +P +VV W T++
Sbjct: 233 LIDGYVKHGRMEDAKDLFYVMPRR--DVVTWATMI 265
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 96/199 (48%), Gaps = 22/199 (11%)
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKE-AVENFERMQKV 182
N +ID Y KCG I SA +LF+ + E KNL+SW S+ISG+A G A + F M
Sbjct: 166 NSMIDGYVKCGLIGSARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMP-- 223
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP--DIKHYGCLIDMLGRAGRL 240
+ + +++ S+++ G +E+ F V+P D+ + +ID + G +
Sbjct: 224 --EKDLISWNSLIDGYVKHGRMEDAKDLF-------YVMPRRDVVTWATMIDGYAKLGFV 274
Query: 241 EQAEKVASGIPSEITNVVVWRTLL-GACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
+A+ + +P +VV + +++ G N+E E + +E E D +
Sbjct: 275 HKAKTLFDQMPHR--DVVAYNSMMAGYVQNKYNMEALEIFSD--MEKESHLSPDETTLVI 330
Query: 300 ILAGVWRYGDAERLRRVVD 318
+L+ + + G RL + +D
Sbjct: 331 VLSAIAQLG---RLSKAMD 346
>gi|224123726|ref|XP_002330193.1| predicted protein [Populus trichocarpa]
gi|222871649|gb|EEF08780.1| predicted protein [Populus trichocarpa]
Length = 485
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 194/330 (58%), Gaps = 3/330 (0%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D K+FDE+ +R+++ WN+MI G K G+++ LF +M R+VVSW +I +
Sbjct: 158 MEDAEKVFDEMYQRDVIVWNLMIHGFCKRGDVDMGLCLFRQMRKRSVVSWNIMISCLAQS 217
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R + AL LF M+ + +P E T++ V P + G V + IH Y + G +
Sbjct: 218 RRDSEALGLFHDMLDWGF-KPDEATVVTVLPICARLGSVDVGKWIHSYAKSSGLYRDFVA 276
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N L+D Y K G +A ++F+++ RKN++SW ++ISG A++G G+ VE E M
Sbjct: 277 VGNALVDFYNKSGMFETARRVFDEMP--RKNVISWNTLISGLALNGNGELGVELLEEMMN 334
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++PN TF+ VL+ C+H GL E G + MVE ++ P ++HYGC++D+LGR+G +
Sbjct: 335 EGVRPNDATFVGVLSCCAHAGLFERGRELLASMVEHHQIEPKLEHYGCMVDLLGRSGCVR 394
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + +P N +W +LL AC HG+VE+ ++++++E G+YVL+ N+
Sbjct: 395 EAYDLIRIMPGGAPNAALWGSLLSACRTHGDVELAHLAVKELIDLEPWNSGNYVLLSNMY 454
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ +R ++ E+N K PG+S++
Sbjct: 455 AEEERWDKVANVRGMMREKNVKKTPGQSVI 484
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 119/283 (42%), Gaps = 35/283 (12%)
Query: 32 ELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVF 91
++ YA +F++ ++ + +I GY+ + LF M P E T+ +
Sbjct: 56 KMAYANRIFKQTQNPTIILFNAMIKGYSLNGPFEESFRLFSSM-KNRGIWPDEYTLAPLL 114
Query: 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI----- 146
A G ++ + +H GF F + +I+ Y+ CG + A K+F+++
Sbjct: 115 KACSSLGVLQLGKCMHKEVLVVGFEGFSA-IRIGVIELYSSCGVMEDAEKVFDEMYQRDV 173
Query: 147 ------------------------SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
+ ++++VSW +IS A EA+ F M
Sbjct: 174 IVWNLMIHGFCKRGDVDMGLCLFRQMRKRSVVSWNIMISCLAQSRRDSEALGLFHDMLDW 233
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG-CLIDMLGRAGRLE 241
KP+ T ++VL C+ G V+ G K+ + + D G L+D ++G E
Sbjct: 234 GFKPDEATVVTVLPICARLGSVDVG-KWIHSYAKSSGLYRDFVAVGNALVDFYNKSGMFE 292
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKIL 284
A +V +P + NV+ W TL+ + +GN E+G + +++
Sbjct: 293 TARRVFDEMPRK--NVISWNTLISGLALNGNGELGVELLEEMM 333
>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
Length = 890
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 123/322 (38%), Positives = 189/322 (58%), Gaps = 7/322 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYTRMNRSNGALALF 71
+ +L+ +N +I K + ARS+F+++P RNVV+WT +I G+ + SN AL LF
Sbjct: 443 DEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLF 502
Query: 72 RRMVACEY-TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG-FNAFHIHVSNCLIDT 129
M++ Y P+ TI + A +R + IH Y + + + V+NCLID
Sbjct: 503 VEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDM 562
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
Y+KCG + +A +F+ +S +K+ +SWTS+++G+ MHG G EA++ F++M+K P+ +
Sbjct: 563 YSKCGDVDTARHVFDSMS--QKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDI 620
Query: 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
TFL VL ACSH G+V++GL +FD M + + P +HY C ID+L R+GRL++A +
Sbjct: 621 TFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKD 680
Query: 250 IPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGD 309
+P E T VVW LL AC H NVE+ E K++EM G Y L+ NI A R+ D
Sbjct: 681 MPMEPT-AVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKD 739
Query: 310 AERLRRVVDERNALKFPGRSLV 331
R+R ++ + K PG S V
Sbjct: 740 VARIRHLMKKSGIKKRPGCSWV 761
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 140/287 (48%), Gaps = 19/287 (6%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRN----VVSWTGIID 56
+++ K+F+ + +++V+WN M+ G + G E A LF+ M N VV+WT +I
Sbjct: 315 LMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIA 374
Query: 57 GYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF- 115
GY++ S+ AL LFR+M+ + P+ +TI++V A G IH Y K
Sbjct: 375 GYSQRGCSHEALNLFRQMIF-SGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLL 433
Query: 116 ---NAF-----HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 167
N F + V N LID Y+KC +A +F+DI +E +N+V+WT +I G A +G
Sbjct: 434 TLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYG 493
Query: 168 MGKEAVENFERM--QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIK 225
+A++ F M + + PN T +L AC+H + G + ++
Sbjct: 494 DSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAY 553
Query: 226 HYG-CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
CLIDM + G ++ A V + + + + W +++ HG
Sbjct: 554 FVANCLIDMYSKCGDVDTARHVFDSMSQK--SAISWTSMMTGYGMHG 598
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 140/311 (45%), Gaps = 55/311 (17%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCR---NVVSWTGIIDGYTRMNRSNGALAL 70
E N+ N ++ + G LE A +F+E+ R +V+SW I+ + + + + AL L
Sbjct: 187 ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDL 246
Query: 71 FRRMVACEYTEPSE-----ITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
F +M + +P+ I+I+ + PA V + +HG + G + V N
Sbjct: 247 FSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNG-TFPDVFVGNA 305
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
LID YAKCG + +A+K+F +E K++VSW ++++G++ G + A E F+ M+K +
Sbjct: 306 LIDAYAKCGLMENAVKVFN--MMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIP 363
Query: 186 -----------------------------------PNRVTFLSVLNACSHGGLVEEGLKF 210
PN VT +SVL+AC+ G +G +
Sbjct: 364 LDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEI 423
Query: 211 FDKMVEECEVL---------PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWR 261
++ C + D+ Y LIDM + + A + IP E NVV W
Sbjct: 424 HAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWT 483
Query: 262 TLLGACSFHGN 272
++G + +G+
Sbjct: 484 VMIGGHAQYGD 494
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 119/274 (43%), Gaps = 16/274 (5%)
Query: 12 LPERNLVTWNVMITGLVK----WGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LP ++ + TG+V G +YA + E + V W +I + + R + A
Sbjct: 80 LPSEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSA 139
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
+ + RM+ T P T+ V A + R HG GF + ++ + N L+
Sbjct: 140 INVSCRMLRAG-TRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFES-NVFICNALV 197
Query: 128 DTYAKCGCIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL-K 185
Y++CG + A +F++I+ +++SW SI+S A++ F +M +V K
Sbjct: 198 AMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEK 257
Query: 186 PNR-----VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
P ++ +++L AC V + + + PD+ LID + G +
Sbjct: 258 PTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRN-GTFPDVFVGNALIDAYAKCGLM 316
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
E A KV + + E +VV W ++ S GN E
Sbjct: 317 ENAVKVFNMM--EFKDVVSWNAMVAGYSQSGNFE 348
>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 119/330 (36%), Positives = 197/330 (59%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D LFD +P R++V+W MI G K G ++ ARSLF+EMP R+VV++ ++ GY +
Sbjct: 274 MEDAQGLFDRMPNRDIVSWANMIDGYAKNGRVDIARSLFDEMPERDVVAYNAMMGGYVQN 333
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL +F M + T+L AI Q G + IH + E+ GF +
Sbjct: 334 GYCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIHRFIEEIGF-SLDGR 392
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LID Y+KCG I +A+ +FE+I + K++ W +II G A+HG+G+ A + M++
Sbjct: 393 LGVALIDMYSKCGSIENAMMVFENI--KEKSVDHWNAIIGGLAIHGLGELAFDFLMEMER 450
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ ++P+ +TF+ +LNAC H GLV+EG+ F+ M +V P ++HYGC++D+LGRAG +E
Sbjct: 451 MRVEPDDITFIGLLNACGHAGLVKEGMMCFELMRRVHKVEPKLQHYGCMVDILGRAGHIE 510
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A+ +P E N V+WR+LL AC H + +G+ V ++ ++ YVL N+
Sbjct: 511 EAKNFVEEMPFE-PNDVIWRSLLSACKTHESFNVGQPVAENLMRLDSPSPSSYVLASNMY 569
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
AG+ ++ D ++R ++ ++N K PG S +
Sbjct: 570 AGLGKWNDVRKVRAMMKQKNLKKIPGCSWI 599
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 145/290 (50%), Gaps = 26/290 (8%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYTRMN 62
S++FD +P+R+ V++N MI G VK G ++ AR +F+ +P RN++SW +I GY +
Sbjct: 181 ASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLARVVFDCIPLEERNLISWNSLIRGYAQ-- 238
Query: 63 RSNGALA---LFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
+G L LF +M E I+ ++ + G + + Q + R ++
Sbjct: 239 SEDGILVAWQLFAKM-----PERDLISWNSMIDGCVKCGRMEDAQGLFDRMPNRDIVSW- 292
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+N +ID YAK G + A LF+++ +++V++ +++ G+ +G EA+ F M
Sbjct: 293 ---AN-MIDGYAKNGRVDIARSLFDEMP--ERDVVAYNAMMGGYVQNGYCMEALGIFYGM 346
Query: 180 QKV-VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
Q + T L L+A + G +++G+ + +EE D + LIDM + G
Sbjct: 347 QSDGNFLLDNATLLIALSAIAQLGHIDKGVA-IHRFIEEIGFSLDGRLGVALIDMYSKCG 405
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
+E A V I + +V W ++G + HG +GE ++EMER
Sbjct: 406 SIENAMMVFENIKEK--SVDHWNAIIGGLAIHG---LGELAFDFLMEMER 450
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 105/249 (42%), Gaps = 49/249 (19%)
Query: 51 WTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYG 110
W II Y+ + A+ L M+ + T+ V A + G V+ IHG
Sbjct: 95 WNAIIKTYSHGHDPKEAMWLVSLMLE-NGAFADKFTLSLVLKACSRVGLVKEGMQIHGLL 153
Query: 111 EKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFED------------------------- 145
+K F + + + NCLI Y KCGC+ A ++F+
Sbjct: 154 KKLEFGS-DLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLA 212
Query: 146 ------ISVERKNLVSWTSIISGFAMHGMG-KEAVENFERMQKVVLKPNR--VTFLSVLN 196
I +E +NL+SW S+I G+A G A + F +M P R +++ S+++
Sbjct: 213 RVVFDCIPLEERNLISWNSLIRGYAQSEDGILVAWQLFAKM------PERDLISWNSMID 266
Query: 197 ACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256
C G +E+ FD+M DI + +ID + GR++ A + +P +
Sbjct: 267 GCVKCGRMEDAQGLFDRMPNR-----DIVSWANMIDGYAKNGRVDIARSLFDEMPER--D 319
Query: 257 VVVWRTLLG 265
VV + ++G
Sbjct: 320 VVAYNAMMG 328
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 128/330 (38%), Positives = 193/330 (58%), Gaps = 11/330 (3%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
+LFD +P RN+ TWN MITG + G++ A++LF++MP R+ VSW +I GY++ S
Sbjct: 326 AKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHS 385
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQL---IHGYGEKRGFNAFHIH 121
AL LF M E + + A+ DV +L +HG K G+
Sbjct: 386 YEALRLFVLM----EREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYET-GCF 440
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N L+ Y KCG I A LF++++ K++VSW ++I+G++ HG G+EA+ FE M++
Sbjct: 441 VGNALLLMYCKCGSIEEANDLFKEMA--GKDIVSWNTMIAGYSRHGFGEEALRFFESMKR 498
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
LKP+ T ++VL+ACSH GLV++G ++F M ++ V P+ +HY C++D+LGRAG LE
Sbjct: 499 EGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLE 558
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + +P E + +W TLLGA HGN E+ E KI ME G YVL+ N+
Sbjct: 559 EAHNLMKNMPFE-PDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLY 617
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+GD +LR + ++ K PG S +
Sbjct: 618 ASSGRWGDVGKLRVRMRDKGVKKVPGYSWI 647
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 140/278 (50%), Gaps = 27/278 (9%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFDE+PER+LV+WNVMI G V+ L AR LFE MP R+V SW I+ GY + + A
Sbjct: 112 LFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDA 171
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
+F RM E ++++ A+ A QN + ++ G E ++ NCL+
Sbjct: 172 RRVFDRM-----PEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSW-----NCLL 221
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP- 186
+ K I A + F+ + V +++VSW +II+G+A +G EA + F+ P
Sbjct: 222 GGFVKKKKIVEARQFFDSMKV--RDVVSWNTIITGYAQNGEIDEARQLFDE------SPV 273
Query: 187 -NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
+ T+ ++++ +VEE + FD+M E EV + ++ + R+E A++
Sbjct: 274 HDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEV-----SWNAMLAGYVQGERVEMAKE 328
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
+ +P NV W T++ + G + + + K+
Sbjct: 329 LFDVMPCR--NVSTWNTMITGYAQCGKISEAKNLFDKM 364
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 151/318 (47%), Gaps = 29/318 (9%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ + FD + R++V+WN +ITG + GE++ AR LF+E P +V +WT ++ GY +
Sbjct: 232 EARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRM 291
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
A LF RM E +E++ A+ Q V + + R + +
Sbjct: 292 VEEARELFDRM-----PERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTW----- 341
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N +I YA+CG I A LF+ + +++ VSW ++I+G++ G EA+ F M++
Sbjct: 342 NTMITGYAQCGKISEAKNLFDKMP--KRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREG 399
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC-----LIDMLGRAG 238
+ NR +F S L+ C+ +E G + ++V+ GC L+ M + G
Sbjct: 400 GRLNRSSFSSALSTCADVVALELGKQLHGRLVKGG------YETGCFVGNALLLMYCKCG 453
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER-GYGGDYVLM 297
+E+A + + + ++V W T++ S HG GE R M+R G D M
Sbjct: 454 SIEEANDLFKEMAGK--DIVSWNTMIAGYSRHG---FGEEALRFFESMKREGLKPDDATM 508
Query: 298 YNILAGVWRYGDAERLRR 315
+L+ G ++ R+
Sbjct: 509 VAVLSACSHTGLVDKGRQ 526
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 119/267 (44%), Gaps = 33/267 (12%)
Query: 3 KDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
K +K + + ++ WNV I+ ++ G A +F+ MP + VS+ +I GY R
Sbjct: 45 KSQTKPLPKSGDSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLR-- 102
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV 122
NG L RM+ E E ++ + +N ++ + + +R ++
Sbjct: 103 --NGEFEL-ARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSW---- 155
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
N ++ YA+ GC+ A ++F+ + KN VSW +++S + V+N + +
Sbjct: 156 -NTILSGYAQNGCVDDARRVFDRMP--EKNDVSWNALLSAY---------VQNSKLEEAC 203
Query: 183 VLKPNRVTFLSVLNACSHGGLVE-----EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
VL +R + V C GG V+ E +FFD M + D+ + +I +
Sbjct: 204 VLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSM-----KVRDVVSWNTIITGYAQN 258
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLL 264
G +++A ++ P + +V W ++
Sbjct: 259 GEIDEARQLFDESP--VHDVFTWTAMV 283
>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
Length = 886
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 123/319 (38%), Positives = 188/319 (58%), Gaps = 7/319 (2%)
Query: 17 LVTWNVMITGLVKWGELEYARSLFEEMPCR--NVVSWTGIIDGYTRMNRSNGALALFRRM 74
L+ +N +I K + ARS+F+ +P R NVV+WT +I GY + SN AL +F M
Sbjct: 442 LMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEM 501
Query: 75 VACEYT-EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG-FNAFHIHVSNCLIDTYAK 132
++ Y P+ TI + A +R + IH Y + + V+NCLID Y+K
Sbjct: 502 ISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSK 561
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
CG + +A +F+ S+ ++N VSWTS++SG+ MHG GKEA++ F++MQK P+ ++FL
Sbjct: 562 CGDVDTARNVFD--SMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFL 619
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
+L ACSH G+V++GL +FD M + +V+ +HY C+ID+L R GRL++A K +P
Sbjct: 620 VLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPM 679
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312
E + V+W LL AC H NVE+ E K++ M+ G Y L+ NI A R+ D R
Sbjct: 680 E-PSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVAR 738
Query: 313 LRRVVDERNALKFPGRSLV 331
+R+++ + K PG S V
Sbjct: 739 IRQLMKKSGIKKRPGCSWV 757
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 139/288 (48%), Gaps = 21/288 (7%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRN----VVSWTGIIDG 57
+ D K+F+ + +++V+WN M+TG + G A LFE M N V++W+ +I G
Sbjct: 310 MNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAG 369
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
Y + S AL F++M+ + +EP+ +TI+++ A G + IH Y K+ +
Sbjct: 370 YAQRGCSQEALDAFQQMIL-DGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLS 428
Query: 118 F-----------HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 166
+ V N LID Y+KC +A +F+ I +N+V+WT +I G+A +
Sbjct: 429 LDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQY 488
Query: 167 GMGKEAVENFERM--QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDI 224
G +A++ F M + + PN T +L AC+H + G + + E P +
Sbjct: 489 GDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSV 548
Query: 225 KHYG-CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
CLIDM + G ++ A V +P N V W +++ HG
Sbjct: 549 YFVANCLIDMYSKCGDVDTARNVFDSMPKR--NEVSWTSMMSGYGMHG 594
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 141/315 (44%), Gaps = 61/315 (19%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCR---NVVSWTGIIDGYTRMNRSNGALAL 70
E N+ N ++ + G LE A +F+E+ + +V+SW I+ + + + AL L
Sbjct: 181 ESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALEL 240
Query: 71 FRRMVACEYTEPSE-----ITILAVFPAIWQNGDVRNCQLIHGYGEKRGF--NAFHIHVS 123
F M + + + I+I+ + PA + + IH Y + G +AF V
Sbjct: 241 FSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAF---VC 297
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS------------------------- 158
N LIDTYAKCG + A+K+F +E K++VSW +
Sbjct: 298 NALIDTYAKCGSMNDAVKVFN--VMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKEN 355
Query: 159 ----------IISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
+I+G+A G +EA++ F++M +PN VT +S+L+AC+ G + +G+
Sbjct: 356 IPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGM 415
Query: 209 KFFDKMVEEC-----------EVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNV 257
+ +++C D+ Y LIDM + + A + IP NV
Sbjct: 416 EIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNV 475
Query: 258 VVWRTLLGACSFHGN 272
V W ++G + +G+
Sbjct: 476 VTWTVMIGGYAQYGD 490
>gi|326496937|dbj|BAJ98495.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 491
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 117/324 (36%), Positives = 185/324 (57%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
FD +PERN+V+WN M+ G L AR LF+ MP RN SW+ ++ G R NR A
Sbjct: 161 FFDAMPERNVVSWNAMLGAYASAGMLSKARKLFDIMPSRNAASWSSMVTGLVRSNRCEEA 220
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L +F M+ P+E +++ A + + +H Y KR + ++ ++
Sbjct: 221 LRVFSEMIGMGVV-PNESALVSAVSACSLLRSLEHGVWVHAYA-KRELQGMSLVLATAIV 278
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y KCG I +A+++F + V KN+ SW S+I+G AM+G +A+ F +MQ ++PN
Sbjct: 279 DMYGKCGGIHNAVRVFAAMPV--KNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVRPN 336
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TF+ +L ACSH GLV+EG F+ MV + P +HYG ++D+LGRAG + +A
Sbjct: 337 DITFIGLLGACSHSGLVDEGRWLFNMMVNGFGIQPVQEHYGLMVDLLGRAGHVREAVDFV 396
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+ +P E + +W L GAC HG VE+GE + +K++E+E +G Y+L+ NI R+
Sbjct: 397 NSMPVE-PHPGLWGALAGACKIHGEVELGEEIAKKLIELEPRHGSRYILLSNIYGASNRW 455
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
D +RR++ +R K G ++V
Sbjct: 456 DDMATVRRLLKDRKVPKGTGNAMV 479
>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 689
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 121/329 (36%), Positives = 191/329 (58%), Gaps = 3/329 (0%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
D KLFD++ R++ +WN +I G +K GE+ A LFE M RN+VSWT +I GYT+
Sbjct: 234 DARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGF 293
Query: 64 SNGALALFRRMVA-CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV 122
+ AL LF M+ +P+ +TI++V PA Q+ + + IH + G + + V
Sbjct: 294 AEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLH-LNSSV 352
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
L YAKC + A F+ I+ KNL++W ++I+ +A HG G EAV FE M +
Sbjct: 353 QTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRA 412
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
++P+ VTF+ +L+ CSH GL++ GL F+ M V P ++HY C++D+LGRAGRL +
Sbjct: 413 GVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVE 472
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302
A+++ S +P + VW LL AC H N+E+ E R++ +E G+YVL+ N+ A
Sbjct: 473 AKELISQMPMQ-AGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYA 531
Query: 303 GVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ + ++LR ++ + K PG S +
Sbjct: 532 EAGMWEEVKKLRALLKYQGMKKSPGCSWI 560
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 120/306 (39%), Gaps = 83/306 (27%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR---MNRSNGALALFRRM----- 74
M+ G+L+ A +F+ + + + + II YTR L + RM
Sbjct: 118 MVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGL 177
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
+ +T P + A + + +HG G + G +V LID Y KCG
Sbjct: 178 LGDNFTLPFVLKSCADLSRVCMG------RCVHGQGLRVGLEG-DFYVGASLIDMYVKCG 230
Query: 135 CIFSALKLFEDISV-----------------------------ERKNLVSWTSIISGFAM 165
I A KLF+ + V E +N+VSWT++ISG+
Sbjct: 231 VIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQ 290
Query: 166 HGMGKEAVENFERMQK--VVLKPNRVTFLSVLNACSHGGLVEEGLKFFD----------- 212
+G ++A+ F+ M + +KPN VT +SVL AC+ +E G + D
Sbjct: 291 NGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNS 350
Query: 213 -------KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
M +C L + + C DM+ + G+ N++ W T++
Sbjct: 351 SVQTALAGMYAKCYSLVEAR---CCFDMIAQNGK----------------NLIAWNTMIT 391
Query: 266 ACSFHG 271
A + HG
Sbjct: 392 AYASHG 397
>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 128/317 (40%), Positives = 192/317 (60%), Gaps = 5/317 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FD++ RNLV+WN MI G +K G+++ A LF+++P +NVVSWT +I G+ + A
Sbjct: 148 VFDQMGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEA 207
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L FR M P +T++A+ A G + +H K+ F ++ V N LI
Sbjct: 208 LECFREMQLAGVV-PDFVTVIAIISACANLGALGLGLWVHRLVMKKEFRD-NVKVLNSLI 265
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D YA+CGCI A ++F+ +S ++NLVSW SII GFA++G+ +A+ F M+K L+PN
Sbjct: 266 DMYARCGCIELARQVFDGMS--QRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGLEPN 323
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
V++ S L ACSH GL++EGLK F + + P I+HYGCL+D+ RAGRL++A V
Sbjct: 324 GVSYTSALTACSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCLVDLYSRAGRLKEAWDVI 383
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P + N VV +LL AC G+VE+ E+V + +E+ G +YVL NI A V ++
Sbjct: 384 KKMPM-MPNEVVLGSLLAACRTQGDVELAEKVMKYQVELYPGGDSNYVLFSNIYAAVGKW 442
Query: 308 GDAERLRRVVDERNALK 324
A ++RR + ER K
Sbjct: 443 DGASKVRREMKERGLQK 459
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 124/268 (46%), Gaps = 40/268 (14%)
Query: 38 SLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQN 97
SL + VSWT I + + N A + F +M+ E EP+ IT++ + A +
Sbjct: 42 SLKHKPNSNQTVSWTSSISHHCKNNNFLKAASEFIQMLEAE-VEPNHITLITLLSACAHS 100
Query: 98 GDVRNCQL---IHGYGEKRGFNAFHIHVSNCLIDTYAKCG------CIF----------- 137
+ +H + K GF + V LID YAKCG +F
Sbjct: 101 PSKTSITFGAALHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSW 160
Query: 138 --------------SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
ALKLF+ + V KN+VSWT +I GF +EA+E F MQ
Sbjct: 161 NTMIDGYMKNGDVDDALKLFDKLPV--KNVVSWTVVIGGFVKKECYEEALECFREMQLAG 218
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
+ P+ VT +++++AC++ G + GL + ++V + E ++K LIDM R G +E A
Sbjct: 219 VVPDFVTVIAIISACANLGALGLGL-WVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELA 277
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHG 271
+V G+ N+V W +++ + +G
Sbjct: 278 RQVFDGMSQR--NLVSWNSIIVGFAVNG 303
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 5/133 (3%)
Query: 154 VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG---LVEEGLKF 210
VSWTS IS + +A F +M + ++PN +T +++L+AC+H + G
Sbjct: 53 VSWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTSITFGAAL 112
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
+ + D+ LIDM + G+L+ A V + + N+V W T++ +
Sbjct: 113 HTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQM--GVRNLVSWNTMIDGYMKN 170
Query: 271 GNVEMGERVTRKI 283
G+V+ ++ K+
Sbjct: 171 GDVDDALKLFDKL 183
>gi|357118276|ref|XP_003560882.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 508
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 184/325 (56%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFDE ++LV WNVM+ K+GE+E AR L + P ++VVSW II GYT
Sbjct: 184 QLFDECQHKDLVCWNVMVAAYAKYGEMEKARGLLDRAPEKDVVSWNTIITGYTAKGLLKE 243
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL + M C P E TI+++ G + ++IH G I N L
Sbjct: 244 ALEVLDEM-RCVGLMPDEATIVSLLSCCANLGSLGTGRMIHSL-HLEGRPCISILPGNAL 301
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+ YAKCG + +A+++F ++ +++ +W SII G A HG +++V+ F +M L P
Sbjct: 302 VSMYAKCGDVQAAMEVFS--RMKERDVWTWNSIIGGLAFHGQAEQSVQFFNKMLDEGLCP 359
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N ++FL VL ACSH GLVE+G ++F M+ + P+ +HY C++DMLGR+G L++A +
Sbjct: 360 NEISFLCVLGACSHAGLVEDGQRYFSLMINRYRIEPNARHYSCIVDMLGRSGLLDEAFAI 419
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
S + E VV+WRTLLGAC HG+V +G+ ++L+M GDYVL+ I A
Sbjct: 420 VSSMRCE-PAVVIWRTLLGACRIHGDVALGKLARERLLKMNEDASGDYVLLSGIYASCDE 478
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ E +R +DER K G + V
Sbjct: 479 WFGVETVRGSMDERGIRKVAGYAQV 503
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 130/322 (40%), Gaps = 79/322 (24%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G ++YAR +F+ + ++ ++ GY A L+RR+ A +P T +
Sbjct: 45 GGMDYARKVFDGISHPDLFMHNVMVRGYAHSAAPAAAFVLYRRIEAAR-LKPDSFTFCYL 103
Query: 91 FPAIWQNGDVRNCQ--LIHGYGEKRGF--NAFHIHVSNCLIDTYAKCGCIFSALKLFE-- 144
A G +C +HG K G+ +AF V N LI+ +AKCG + A L +
Sbjct: 104 LRAC--AGLPGSCAGYQVHGAVVKLGYFKDAF---VRNALINMHAKCGDLLVAGTLLDEA 158
Query: 145 ---------------------DIS------VERKNLVSW--------------------- 156
DI+ + K+LV W
Sbjct: 159 GERDVVARSAVIAGHAAKGELDIARQLFDECQHKDLVCWNVMVAAYAKYGEMEKARGLLD 218
Query: 157 ----------TSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEE 206
+II+G+ G+ KEA+E + M+ V L P+ T +S+L+ C++ G +
Sbjct: 219 RAPEKDVVSWNTIITGYTAKGLLKEALEVLDEMRCVGLMPDEATIVSLLSCCANLGSLGT 278
Query: 207 GLKFFDKMVE--EC-EVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTL 263
G +E C +LP L+ M + G ++ A +V S + +V W ++
Sbjct: 279 GRMIHSLHLEGRPCISILPG----NALVSMYAKCGDVQAAMEVFSRMKER--DVWTWNSI 332
Query: 264 LGACSFHGNVEMGERVTRKILE 285
+G +FHG E + K+L+
Sbjct: 333 IGGLAFHGQAEQSVQFFNKMLD 354
>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 191/327 (58%), Gaps = 5/327 (1%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
KLF ++ RNLV MI+G + G +E AR +F++M +++V W+ +I GY ++
Sbjct: 2 AQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKP 61
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
AL LF M +P ++TIL+V A + G + + IH Y +K G + V+N
Sbjct: 62 QEALNLFSEMQVFG-IKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGA-LPVNN 119
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LID YAKCG + +A +FE ++ +N++SWTS+I+ FA+HG A++ F +M+ +
Sbjct: 120 ALIDMYAKCGNLGAARGVFE--KMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENI 177
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
KPN VTF+ VL ACSH GLVEEG + F M E + P +HYGC++D+ GRA L A
Sbjct: 178 KPNGVTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDAL 237
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
++ +P NVV+W +L+ AC HG E+GE +++LE+E + G V + NI A
Sbjct: 238 ELVETMPLA-PNVVIWGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKD 296
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
R+ D LR ++ +R K G S +
Sbjct: 297 RRWQDVGELRNLMKQRGISKERGCSRI 323
>gi|125528817|gb|EAY76931.1| hypothetical protein OsI_04889 [Oryza sativa Indica Group]
Length = 565
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 123/324 (37%), Positives = 190/324 (58%), Gaps = 5/324 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FD++P R+ +W+V+I G K G + AR +F+ MP +N+V+WT +I+GY +
Sbjct: 200 RVFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKE 259
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
+LALFR M A EP T++ V A Q G + Y +K+ + V L
Sbjct: 260 SLALFREMEAAG-IEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIER-NDKVLTAL 317
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+D +AKCG + AL F +I+ + + +T++ISG A HG K A++ FERMQ + P
Sbjct: 318 VDMHAKCGNVDEALSAFREIA--QPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWP 375
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +TF+ VL ACSH GLV++GL +++ MV+ + HY C++DMLGRAGRLE+A ++
Sbjct: 376 DPITFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLEEAFEM 435
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P + LL AC HGNVE+ E V K+ E+E G+Y+++ NI A +
Sbjct: 436 VQTMPMG-PHPGALGALLSACKTHGNVEIAEIVANKLFELEPHNTGNYIMLSNIYAEKEQ 494
Query: 307 YGDAERLRRVVDERNALKFPGRSL 330
+ +AER+R V+ R K PG S+
Sbjct: 495 WEEAERIRSVMRTRVPFKQPGSSM 518
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 114/268 (42%), Gaps = 46/268 (17%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
+ V++N ++ + + A SLF MP R VSW ++ Y + A +F +M
Sbjct: 147 DAVSFNSLLCAHARLASVPDAESLFAAMPSRTQVSWNAMVVVYVNAGDVSSARRVFDQMP 206
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
+ T W + LI Y KCG
Sbjct: 207 TRDSTS-------------W----------------------------SVLIVGYCKCGS 225
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ SA ++F+ + KNLV+WT++I+G+A G+ KE++ F M+ ++P+ T + V+
Sbjct: 226 MRSAREVFDRMPA--KNLVAWTAMINGYAQSGVPKESLALFREMEAAGIEPDAATMVGVI 283
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+A S G E + V++ + + K L+DM + G +++A I
Sbjct: 284 SAASQIGSTELA-GWVGSYVDKKRIERNDKVLTALVDMHAKCGNVDEALSAFREIAQ--P 340
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKI 283
+ + L+ + HG+ ++ +V ++
Sbjct: 341 DAYPYTALISGLAAHGHAKLALQVFERM 368
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 83/195 (42%), Gaps = 21/195 (10%)
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+ V+N L+D YAKC + +A DI+ + VS+ S++ A +A F M
Sbjct: 117 LPVANALVDLYAKCDDLPAAHTALADIAA--PDAVSFNSLLCAHARLASVPDAESLFAAM 174
Query: 180 QKVVLKPNR--VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
P+R V++ +++ + G V + FD+M D + LI +
Sbjct: 175 ------PSRTQVSWNAMVVVYVNAGDVSSARRVFDQMPTR-----DSTSWSVLIVGYCKC 223
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME-RGYGGDYVL 296
G + A +V +P++ N+V W ++ + G + + R EME G D
Sbjct: 224 GSMRSAREVFDRMPAK--NLVAWTAMINGYAQSGVPKESLALFR---EMEAAGIEPDAAT 278
Query: 297 MYNILAGVWRYGDAE 311
M +++ + G E
Sbjct: 279 MVGVISAASQIGSTE 293
>gi|38345134|emb|CAE02724.2| OSJNBa0055H05.11 [Oryza sativa Japonica Group]
gi|215697200|dbj|BAG91194.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 408
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/323 (38%), Positives = 189/323 (58%), Gaps = 5/323 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
KL++ + E+ +V M+ G K G++E A S+F MP ++VVSW+ +I GY ++
Sbjct: 66 KLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPME 125
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL LF M +P EIT+L+V A G + + IH + E + + N L
Sbjct: 126 ALNLFHDMQR-SGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKI-LPIGNAL 183
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID ++KCG + AL +F ++ +KN+V+WTSII+ AMHG G+ A+ FE M+ ++P
Sbjct: 184 IDMFSKCGSLTLALDVFN--AMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQP 241
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N VTFL +L AC H GLVEEG F MV++ + P +HYGC++D+LGRA L QA +
Sbjct: 242 NGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADL 301
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ NVV+W +LL AC HG++E+G +KILE++ +GG VL+ NI A
Sbjct: 302 IQSMHLR-PNVVIWGSLLAACRMHGDLELGTFAAKKILELDPNHGGAQVLLSNIYAEYGN 360
Query: 307 YGDAERLRRVVDERNALKFPGRS 329
+ D + +R V++ + K G S
Sbjct: 361 WNDVKEVRGVMEVQGTWKKKGCS 383
>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
Length = 620
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 124/330 (37%), Positives = 194/330 (58%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + LF ++P R++ + N+MITG ++ +L+ AR LF+EMP RNVV+WT +++GY +
Sbjct: 243 LDEALDLFTKMPHRDIASCNIMITGFIQNKDLKRARKLFDEMPERNVVTWTTMMNGYLKG 302
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+S +L LFR M+ P+++T L A + + +H K F
Sbjct: 303 KQSELSLGLFRGMLMSG-IRPNQVTFLGALDACSDLATLCEGKQVHQMICKTAFQ-VDTF 360
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V + L++ YAKCG + A KLF D+S E K+L+SW II+ +A HG+G EA+ +E+MQ
Sbjct: 361 VGSALMNVYAKCGEVGLARKLF-DLSRE-KDLISWNGIIAAYAHHGVGIEAIHLYEKMQG 418
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+PN VT++ +L+ACSH GLV+EGLK F+ MV + + +HY CLID+ RAGRL+
Sbjct: 419 NGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLD 478
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A+++ + + + VW LLG C+ HGN +G R +++ E G Y L+ NI
Sbjct: 479 DAKRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLAARNLIQAEPDNAGTYTLLSNIY 538
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ +A +R ++ R K PG S +
Sbjct: 539 ASAGKWKEAAEIRSEMNNRGLKKQPGCSWI 568
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 127/265 (47%), Gaps = 46/265 (17%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LF +PER+++ W M+ G+ + G ++ AR LF+ MP RNVVSW +I GYTR +R +
Sbjct: 186 ELFGRMPERDVMAWTTMVDGVARSGNVDEARLLFDSMPERNVVSWNAMISGYTRNHRLDE 245
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL LF +M + D+ +C N +
Sbjct: 246 ALDLFTKM---------------------PHRDIASC--------------------NIM 264
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
I + + + A KLF+++ +N+V+WT++++G+ + ++ F M ++P
Sbjct: 265 ITGFIQNKDLKRARKLFDEM--PERNVVTWTTMMNGYLKGKQSELSLGLFRGMLMSGIRP 322
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N+VTFL L+ACS + EG K +M+ + D L+++ + G + A K+
Sbjct: 323 NQVTFLGALDACSDLATLCEG-KQVHQMICKTAFQVDTFVGSALMNVYAKCGEVGLARKL 381
Query: 247 ASGIPSEITNVVVWRTLLGACSFHG 271
S +++ W ++ A + HG
Sbjct: 382 FD--LSREKDLISWNGIIAAYAHHG 404
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 125/265 (47%), Gaps = 30/265 (11%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC-RNVVSWTGIIDGYTRMN 62
D KLFD PER++V+W +++ + G L ARSLF+ RNVV+WT ++ GY R
Sbjct: 58 DARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLFDRSDARRNVVTWTALLSGYARAG 117
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV 122
+ A LF+RM + S T+L + + GD C L F+ +
Sbjct: 118 LVDEAEVLFQRM--PQRNVVSWNTMLEAYAVAGRAGDA--CAL---------FDRMPVRD 164
Query: 123 S---NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+ N L+ + G + A +LF + +++++WT+++ G A G EA F+ M
Sbjct: 165 AGSWNILLAMLVRSGSVDKARELFG--RMPERDVMAWTTMVDGVARSGNVDEARLLFDSM 222
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+ N V++ ++++ + ++E L F KM DI +I +
Sbjct: 223 P----ERNVVSWNAMISGYTRNHRLDEALDLFTKMPHR-----DIASCNIMITGFIQNKD 273
Query: 240 LEQAEKVASGIPSEITNVVVWRTLL 264
L++A K+ +P NVV W T++
Sbjct: 274 LKRARKLFDEMPER--NVVTWTTMM 296
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 13/180 (7%)
Query: 1 FLKDGSKLFDEL-PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYT 59
L+D LFD RN+VTW +++G + G ++ A LF+ MP RNVVSW +++ Y
Sbjct: 86 MLRDARSLFDRSDARRNVVTWTALLSGYARAGLVDEAEVLFQRMPQRNVVSWNTMLEAYA 145
Query: 60 RMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
R+ A ALF RM + IL + ++G V + + G +R A+
Sbjct: 146 VAGRAGDACALFDRM---PVRDAGSWNIL--LAMLVRSGSVDKARELFGRMPERDVMAW- 199
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
++D A+ G + A LF+ S+ +N+VSW ++ISG+ + EA++ F +M
Sbjct: 200 ----TTMVDGVARSGNVDEARLLFD--SMPERNVVSWNAMISGYTRNHRLDEALDLFTKM 253
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/314 (22%), Positives = 129/314 (41%), Gaps = 70/314 (22%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I L G + AR LF+ P R+VVSWT ++ Y R A +LF R
Sbjct: 44 NRLIVDLAAAGRVWDARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLFDR------- 96
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
D R ++ L+ YA+ G + A
Sbjct: 97 -----------------SDARR----------------NVVTWTALLSGYARAGLVDEAE 123
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV--TFLSVLNAC 198
LF+ + ++N+VSW +++ +A+ G +A F+RM P R ++ +L
Sbjct: 124 VLFQ--RMPQRNVVSWNTMLEAYAVAGRAGDACALFDRM------PVRDAGSWNILLAML 175
Query: 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
G V++ + F +M E D+ + ++D + R+G +++A + +P NVV
Sbjct: 176 VRSGSVDKARELFGRMPER-----DVMAWTTMVDGVARSGNVDEARLLFDSMPER--NVV 228
Query: 259 VWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL-AGVWRYGDAERLRRVV 317
W ++ + + ++ + K+ + + NI+ G + D +R R++
Sbjct: 229 SWNAMISGYTRNHRLDEALDLFTKMPHRD-------IASCNIMITGFIQNKDLKRARKLF 281
Query: 318 DERNALKFPGRSLV 331
DE P R++V
Sbjct: 282 DE-----MPERNVV 290
>gi|357501421|ref|XP_003620999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365545|gb|ABN09779.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496014|gb|AES77217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 601
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 119/317 (37%), Positives = 200/317 (63%), Gaps = 5/317 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFD++ +N+++W M+ G + G+++ AR LF+ MP +NV+SW +I GY + RS+ A
Sbjct: 242 LFDKMRVKNVISWTSMVHGYSEDGDVDEARFLFDCMPEKNVLSWNAMIRGYCQNGRSHDA 301
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LF M E +E+T+++V PA+ + +HG+ ++ + +HV N L+
Sbjct: 302 LKLFCEMRGNVDVEMNEVTVVSVLPAVADLSALDLGGWVHGFVQRNQLDG-SVHVCNALV 360
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D YAKCG I A +FE+++ K+ SW ++I+G+ ++G KEA+E F M + +PN
Sbjct: 361 DMYAKCGEIGKAKLVFEEMT--EKDTGSWNALINGYGVNGCAKEALEVFAMMLREGFEPN 418
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
++T SVL+AC+H GLVEEG + F+ M E ++P I+HYGC+ID+LGRAGRL++AEK+
Sbjct: 419 QITMTSVLSACNHCGLVEEGRRCFEAM-ERFGIVPQIEHYGCMIDLLGRAGRLDEAEKLI 477
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P + N ++ + L AC + +V ER+ + ++ME+ GDYV++ N+ A R+
Sbjct: 478 QAMPYD-PNEIILTSFLFACCYFEDVSRAERILKVAVKMEKEGAGDYVMLRNLYATERRW 536
Query: 308 GDAERLRRVVDERNALK 324
D E ++ ++ +R + K
Sbjct: 537 ADVEDVKEMMKKRGSNK 553
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/312 (23%), Positives = 134/312 (42%), Gaps = 40/312 (12%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
+L ++ VK+G++ +AR +F+EM R++VSWT +I GY R A LF MV
Sbjct: 157 DLYVGTSLVDMYVKFGDVGFARKVFDEMSVRSLVSWTAVIVGYARCGDMVEARKLFDGMV 216
Query: 76 ACE----------YTEPSEITIL-AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
+ Y + + + +F + + ++HGY E
Sbjct: 217 DRDVAAFNVMIDGYVKMGRMDLARDLFDKMRVKNVISWTSMVHGYSED------------ 264
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ-KVV 183
G + A LF+ + KN++SW ++I G+ +G +A++ F M+ V
Sbjct: 265 ---------GDVDEARFLFD--CMPEKNVLSWNAMIRGYCQNGRSHDALKLFCEMRGNVD 313
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
++ N VT +SVL A + ++ G + V+ ++ + L+DM + G + +A
Sbjct: 314 VEMNEVTVVSVLPAVADLSALDLG-GWVHGFVQRNQLDGSVHVCNALVDMYAKCGEIGKA 372
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
+ V + + T W L+ +G + V +L G+ + + M ++L+
Sbjct: 373 KLVFEEMTEKDTG--SWNALINGYGVNGCAKEALEVFAMML--REGFEPNQITMTSVLSA 428
Query: 304 VWRYGDAERLRR 315
G E RR
Sbjct: 429 CNHCGLVEEGRR 440
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 107/240 (44%), Gaps = 19/240 (7%)
Query: 33 LEYARSLFEEMP---CRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILA 89
+++AR F P C + T II+ + + + N L+ + + PS T
Sbjct: 70 VQHARLFFNHTPPHKCDEFLCNT-IINAHFSLRQFNHGFTLYNQFSKDCFFRPSSYTFTL 128
Query: 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE 149
+ + R IHG K F ++V L+D Y K G + A K+F+++SV
Sbjct: 129 ILKGCSVSDAKRQGFQIHGVVLKNWF-CLDLYVGTSLVDMYVKFGDVGFARKVFDEMSV- 186
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
++LVSWT++I G+A G EA + F+ M + + F +++ G ++
Sbjct: 187 -RSLVSWTAVIVGYARCGDMVEARKLFDGM----VDRDVAAFNVMIDGYVKMGRMDLARD 241
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL-GACS 268
FDKM + ++ + ++ G +++A + +P + NV+ W ++ G C
Sbjct: 242 LFDKM-----RVKNVISWTSMVHGYSEDGDVDEARFLFDCMPEK--NVLSWNAMIRGYCQ 294
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 187/309 (60%), Gaps = 4/309 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL N +I K G+L+ AR LFE + ++++SW +I GY+ MN ALALFR+M
Sbjct: 298 NLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQ 357
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
EP+++T +++ PA G + + IH Y +K+ + + LID YAKCG
Sbjct: 358 QSN-VEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGN 416
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
I +A ++F ++ K+L SW ++ISG AMHG A+E F +M+ +P+ +TF+ VL
Sbjct: 417 IEAAKQVFA--GMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVL 474
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+ACSH GLVE G + F MVE+ ++ P ++HYGC+ID+LGRAG ++AE + + +
Sbjct: 475 SACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMK-P 533
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
+ +W +LLGAC HGNVE+GE + + E+E G YVL+ NI A R+ D R+R
Sbjct: 534 DGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRT 593
Query: 316 VVDERNALK 324
++++ K
Sbjct: 594 KLNDKGMKK 602
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 162/308 (52%), Gaps = 8/308 (2%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+F + R+ V++ +ITG G L+ AR LFEE+P R+ VSW +I GY + R A
Sbjct: 189 VFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEA 248
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
LA F+ M P+E T++ V A Q+G + + + E G + ++ + N LI
Sbjct: 249 LAFFQEMKRAN-VAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGS-NLRLVNALI 306
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y+KCG + A LFE I K+++SW +I G++ KEA+ F +MQ+ ++PN
Sbjct: 307 DMYSKCGDLDKARDLFEGIC--EKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPN 364
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
VTF+S+L AC++ G ++ G + ++ L + + LIDM + G +E A++V
Sbjct: 365 DVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVF 424
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+G+ + ++ W ++ + HG+ M + R++ + G+ D + +L+
Sbjct: 425 AGMKPK--SLGSWNAMISGLAMHGHANMALELFRQM--RDEGFEPDDITFVGVLSACSHA 480
Query: 308 GDAERLRR 315
G E R+
Sbjct: 481 GLVELGRQ 488
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 134/290 (46%), Gaps = 36/290 (12%)
Query: 26 GLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEI 85
+ +G L YA LFE + N W +I G + + GA+ + RM+ C EP+
Sbjct: 75 AISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCG-VEPNSY 133
Query: 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA-FHIHVS--------------------- 123
T + + + G + + IHG+ K G + +H S
Sbjct: 134 TFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKS 193
Query: 124 --------NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
LI Y GC+ A +LFE+I V ++ VSW ++I+G+A G +EA+
Sbjct: 194 SLRDAVSFTALITGYTLRGCLDDARRLFEEIPV--RDAVSWNAMIAGYAQSGRFEEALAF 251
Query: 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
F+ M++ + PN T ++VL+AC+ G +E G + +E+ + +++ LIDM
Sbjct: 252 FQEMKRANVAPNESTMVTVLSACAQSGSLELG-NWVRSWIEDHGLGSNLRLVNALIDMYS 310
Query: 236 RAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
+ G L++A + GI + +++ W ++G S + + + RK+ +
Sbjct: 311 KCGDLDKARDLFEGICEK--DIISWNVMIGGYSHMNSYKEALALFRKMQQ 358
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 12/187 (6%)
Query: 101 RNCQLIHGYGEKRGFNAFHIHVSN----CLIDTYAKCGCIFSALKLFEDISVERKNLVSW 156
+N + IH K G + +S C I + G + AL LFE S+E+ N W
Sbjct: 46 QNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPF---GNLSYALLLFE--SIEQPNQFIW 100
Query: 157 TSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVE 216
++I G ++ A++ + RM ++PN TF +L +C+ G +EG K V
Sbjct: 101 NTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEG-KQIHGHVL 159
Query: 217 ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMG 276
+ + D + LI+M + G L AE V S S + + V + L+ + G ++
Sbjct: 160 KLGLESDPFVHTSLINMYAQNGELGYAELVFS--KSSLRDAVSFTALITGYTLRGCLDDA 217
Query: 277 ERVTRKI 283
R+ +I
Sbjct: 218 RRLFEEI 224
>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
Length = 922
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 115/323 (35%), Positives = 192/323 (59%), Gaps = 6/323 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++F + +++V+WN + LV+ L+ AR+ F+ M R+ VSWT II Y +SN
Sbjct: 475 QVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNE 534
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ F+ M CE+ P+ + + G + Q IH K G ++ I V+N L
Sbjct: 535 AMGAFKTMF-CEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELI-VANAL 592
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
I Y KCGC S ++F+ +E +++ +W +II+G+A HG+G+EA++ ++ M+ + P
Sbjct: 593 ISMYFKCGCADSR-RIFD--LMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLP 649
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N VTF+ +LNACSH GLV+EG KFF M ++ + P +HY C++D+LGR G ++ AE+
Sbjct: 650 NEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQF 709
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E + V+W LLGAC H N E+G+R K+ +E G+YV++ NI + +
Sbjct: 710 IYDMPIE-PDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGM 768
Query: 307 YGDAERLRRVVDERNALKFPGRS 329
+G+ +R+++ ++ +K PG S
Sbjct: 769 WGEVAEVRKIMKQQGVIKEPGCS 791
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 126/260 (48%), Gaps = 21/260 (8%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ D LF+++PE +V+WN +ITG ++ G + A+ LF++MP RN +SW G+I GY +
Sbjct: 338 IDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQN 397
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG--FNAFH 119
RS AL L + + PS ++ ++F A + +H K G FN+F
Sbjct: 398 GRSEEALGLLQELHRSGML-PSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSF- 455
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
N LI Y KC + A ++F + K++VSW S ++ + + EA F+ M
Sbjct: 456 --ACNALITMYGKCRNMEYARQVFSRMVT--KDIVSWNSFLAALVQNDLLDEARNTFDNM 511
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
L + V++ ++++A +H E + F M E E LP+ L+ + G G
Sbjct: 512 ----LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHE-LPNSPILTILLGVCGSLG- 565
Query: 240 LEQAEKVASGIPSEITNVVV 259
AS I +I V +
Sbjct: 566 -------ASKIGQQIHTVAI 578
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 131/269 (48%), Gaps = 16/269 (5%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD +P R++ +WN M+TG ++ AR+LFE+MP RN+VSWT +I GY R+
Sbjct: 148 RLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGK 207
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A +F +M E P + + A+ G++ + + K GF + + +
Sbjct: 208 AWDIFCKMHR-EGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFER-DVVIGTAI 265
Query: 127 IDTYAKCGCIF-SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
++ Y++ + +A+K FE S+ +N +W+++I+ + G A+ +ER V
Sbjct: 266 LNVYSRDTSVLDTAIKFFE--SMIERNEYTWSTMIAALSHGGRIDAAIAVYER-DPVKSI 322
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
R ++ L C G +++ F+++ E P + + LI + G + +A++
Sbjct: 323 ACRTALITGLAQC---GRIDDARILFEQIPE-----PIVVSWNALITGYMQNGMVNEAKE 374
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVE 274
+ +P N + W ++ + +G E
Sbjct: 375 LFDKMP--FRNTISWAGMIAGYAQNGRSE 401
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 76/342 (22%), Positives = 136/342 (39%), Gaps = 76/342 (22%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ ++FD +P R+++ WN MI+ G + AR L++ + N+ + ++ GY R+ R
Sbjct: 52 EAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGYGRLGR 111
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
A +F M+ E + + A+ QNGD+ + + R +++
Sbjct: 112 VLEARRVFDGML-----ERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSW----- 161
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N ++ Y + A LFE + +NLVSWT +ISG+ +A + F +M +
Sbjct: 162 NSMLTGYCHSLQMVDARNLFEKMP--ERNLVSWTVMISGYGRIENHGKAWDIFCKMHREG 219
Query: 184 LKPNRVTFLSVLNACSHGG------------------------------------LVEEG 207
L P++ F S L+A G +++
Sbjct: 220 LLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTA 279
Query: 208 LKFFDKMVEECE-----VLPDIKHYG---------------------CLIDMLGRAGRLE 241
+KFF+ M+E E ++ + H G LI L + GR++
Sbjct: 280 IKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRID 339
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
A + IP I VV W L+ +G V + + K+
Sbjct: 340 DARILFEQIPEPI--VVSWNALITGYMQNGMVNEAKELFDKM 379
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 71/181 (39%), Gaps = 38/181 (20%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
D ++FD + ER++ TWN +ITG + G A +++ M V+
Sbjct: 603 DSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVL-------------- 648
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDV-RNCQLIHGYGEKRGFNAFHIHV 122
P+E+T + + A G V + + G H
Sbjct: 649 ------------------PNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHY 690
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKEAVENFERM 179
+ C++D + G + A + D+ +E ++ W++++ +H +GK A E R+
Sbjct: 691 A-CMVDLLGRTGDVQGAEQFIYDMPIEPDTVI-WSALLGACKIHKNAEIGKRAAEKLFRI 748
Query: 180 Q 180
+
Sbjct: 749 E 749
>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
Length = 746
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 117/314 (37%), Positives = 188/314 (59%), Gaps = 4/314 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
+++ N M+ K +++ A+ +F+ +P R+VVSW +I GY + +N A+ ++ M
Sbjct: 304 DIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMH 363
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
E +P + T ++V PA G ++ +H K G N ++V+ CLID YAKCG
Sbjct: 364 NHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLN-LDVYVTTCLIDLYAKCGK 422
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ A+ LFE + R++ W +II+G +HG G +A+ F +MQ+ +KP+ VTF+S+L
Sbjct: 423 LVEAMFLFEHMP--RRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLL 480
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
ACSH GLV++G FFD M ++P KHY C++DMLGRAG+L++A + +P +
Sbjct: 481 AACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIK-P 539
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
+ VW LLGAC HGNVEMG+ ++ + E++ G YVLM N+ A + ++ + +R
Sbjct: 540 DSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRS 599
Query: 316 VVDERNALKFPGRS 329
+V +N K PG S
Sbjct: 600 LVRRQNLQKTPGWS 613
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 149/304 (49%), Gaps = 11/304 (3%)
Query: 17 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVA 76
L N +I K G L A +F M R++V+W II + + A+ LF M+
Sbjct: 203 LFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMME 262
Query: 77 CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136
P +T++++ A+ Q GD + +H Y +RG++ I N ++D YAK I
Sbjct: 263 SGVC-PDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKI 321
Query: 137 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFLSVL 195
+A K+F+++ +++VSW ++I+G+ +G+ EA+ + M LKP + TF+SVL
Sbjct: 322 DAAQKVFDNLP--DRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVL 379
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
A S+ G +++G++ ++ L D+ CLID+ + G+L +A + +P T
Sbjct: 380 PAYSYLGGLQQGMRMHALSIKTGLNL-DVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRST 438
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMER-GYGGDYVLMYNILAGVWRYGDAERLR 314
W ++ HG+ G + +M++ D+V ++LA G ++ R
Sbjct: 439 G--PWNAIIAGLGVHGH---GAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGR 493
Query: 315 RVVD 318
D
Sbjct: 494 SFFD 497
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 123/255 (48%), Gaps = 18/255 (7%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
N+ ++ +++G + A +F+EMP R+V +W ++ G R R+ A+ L RMV
Sbjct: 101 NVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMV 160
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
E +T+ +V P GD ++H Y K G + + V N LID Y K G
Sbjct: 161 G-EGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSG-ELFVCNALIDVYGKLGM 218
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ A +F +++ ++LV+W SIIS G AVE F M + + P+ +T +S+
Sbjct: 219 LTEAHWVFGGMAL--RDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLA 276
Query: 196 NACSHGGLVEEGLKFFDKMVEECEV------LPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
+A + G E G K C V + DI ++DM + +++ A+KV
Sbjct: 277 SAVAQCG-DELGAKSV-----HCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDN 330
Query: 250 IPSEITNVVVWRTLL 264
+P +VV W TL+
Sbjct: 331 LPDR--DVVSWNTLI 343
>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
Length = 922
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 115/323 (35%), Positives = 192/323 (59%), Gaps = 6/323 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++F + +++V+WN + LV+ L+ AR+ F+ M R+ VSWT II Y +SN
Sbjct: 475 QVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNE 534
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ F+ M CE+ P+ + + G + Q IH K G ++ I V+N L
Sbjct: 535 AMGAFKTMF-CEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELI-VANAL 592
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
I Y KCGC S ++F+ +E +++ +W +II+G+A HG+G+EA++ ++ M+ + P
Sbjct: 593 ISMYFKCGCADSR-RIFD--LMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLP 649
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N VTF+ +LNACSH GLV+EG KFF M ++ + P +HY C++D+LGR G ++ AE+
Sbjct: 650 NEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQF 709
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E + V+W LLGAC H N E+G+R K+ +E G+YV++ NI + +
Sbjct: 710 IYDMPIE-PDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGM 768
Query: 307 YGDAERLRRVVDERNALKFPGRS 329
+G+ +R+++ ++ +K PG S
Sbjct: 769 WGEVAEVRKIMKQQGVIKEPGCS 791
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 126/260 (48%), Gaps = 21/260 (8%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ D LF+++PE +V+WN +ITG ++ G + A+ LF++MP RN +SW G+I GY +
Sbjct: 338 IDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQN 397
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG--FNAFH 119
RS AL L + + PS ++ ++F A + +H K G FN+F
Sbjct: 398 GRSEEALGLLQELHRSGML-PSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSF- 455
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
N LI Y KC + A ++F + K++VSW S ++ + + EA F+ M
Sbjct: 456 --ACNALITMYGKCRNMEYARQVFSRMVT--KDIVSWNSFLAALVQNDLLDEARNTFDNM 511
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
L + V++ ++++A +H E + F M E E LP+ L+ + G G
Sbjct: 512 ----LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHE-LPNSPILTILLGVCGSLG- 565
Query: 240 LEQAEKVASGIPSEITNVVV 259
AS I +I V +
Sbjct: 566 -------ASKIGQQIHTVAI 578
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 131/269 (48%), Gaps = 16/269 (5%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD +P R++ +WN M+TG ++ AR+LFE+MP RN+VSWT +I GY R+
Sbjct: 148 RLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGK 207
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A +F +M E P + + A+ G++ + + K GF + + +
Sbjct: 208 AWDIFCKMHR-EGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFER-DVVIGTAI 265
Query: 127 IDTYAKCGCIF-SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
++ Y++ + +A+K FE S+ +N +W+++I+ + G A+ +ER V
Sbjct: 266 LNVYSRDTSVLDTAIKFFE--SMIERNEYTWSTMIAALSHGGRIDAAIAVYER-DPVKSI 322
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
R ++ L C G +++ F+++ E P + + LI + G + +A++
Sbjct: 323 ACRTALITGLAQC---GRIDDARILFEQIPE-----PIVVSWNALITGYMQNGMVNEAKE 374
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVE 274
+ +P N + W ++ + +G E
Sbjct: 375 LFDKMP--FRNTISWAGMIAGYAQNGRSE 401
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 76/342 (22%), Positives = 136/342 (39%), Gaps = 76/342 (22%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ ++FD +P R+++ WN MI+ G + AR L++ + N+ + ++ GY R+ R
Sbjct: 52 EAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGYGRLGR 111
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
A +F M+ E + + A+ QNGD+ + + R +++
Sbjct: 112 VLEARRVFDGML-----ERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSW----- 161
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N ++ Y + A LFE + +NLVSWT +ISG+ +A + F +M +
Sbjct: 162 NSMLTGYCHSLQMVDARNLFEKMP--ERNLVSWTVMISGYGRIENHGKAWDIFCKMHREG 219
Query: 184 LKPNRVTFLSVLNACSHGG------------------------------------LVEEG 207
L P++ F S L+A G +++
Sbjct: 220 LLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTA 279
Query: 208 LKFFDKMVEECE-----VLPDIKHYG---------------------CLIDMLGRAGRLE 241
+KFF+ M+E E ++ + H G LI L + GR++
Sbjct: 280 IKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRID 339
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
A + IP I VV W L+ +G V + + K+
Sbjct: 340 DARILFEQIPEPI--VVSWNALITGYMQNGMVNEAKELFDKM 379
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 71/181 (39%), Gaps = 38/181 (20%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
D ++FD + ER++ TWN +ITG + G A +++ M V+
Sbjct: 603 DSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVL-------------- 648
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDV-RNCQLIHGYGEKRGFNAFHIHV 122
P+E+T + + A G V + + G H
Sbjct: 649 ------------------PNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHY 690
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKEAVENFERM 179
+ C++D + G + A + D+ +E ++ W++++ +H +GK A E R+
Sbjct: 691 A-CMVDLLGRTGDVQGAEQFIYDMPIEPDTVI-WSALLGACKIHKNAEIGKRAAEKLFRI 748
Query: 180 Q 180
+
Sbjct: 749 E 749
>gi|51535410|dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125596587|gb|EAZ36367.1| hypothetical protein OsJ_20695 [Oryza sativa Japonica Group]
gi|218197849|gb|EEC80276.1| hypothetical protein OsI_22264 [Oryza sativa Indica Group]
Length = 517
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 189/327 (57%), Gaps = 8/327 (2%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FDE +++V WNVM+ K GE+E AR LF+ P ++VVSW II GY
Sbjct: 187 KMFDECTHKDIVCWNVMLGAYAKHGEMENARELFDRAPEKDVVSWNTIITGYAAQGMLKH 246
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHG--YGEKRGFNAFHIHVSN 124
AL +F M A +T P E TI+++ G + ++IH + E+R + I V N
Sbjct: 247 ALEVFDEMRAAGWT-PDEATIVSLLSCCANTGLLDAGRMIHHQLHLERRPW--ISIVVGN 303
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
L+ YAKCG + +A++ F +++ ++ +W S+I G A HG +++V F++M + +
Sbjct: 304 ALVSMYAKCGDLHTAVEGFN--TMKDTDVWTWNSVIGGLAFHGQAEQSVRFFKKMLEKRI 361
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
PN ++FL VL ACSH GLVE+G KFF M + + P+ +HY C++DMLGRAG L++A
Sbjct: 362 HPNEISFLCVLGACSHAGLVEDGQKFFYLMKDRYGIEPNARHYSCIVDMLGRAGLLDEAY 421
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+ S + E + VVWRTLLGAC HGN+ +G+ V K+L M DYVL+ I A
Sbjct: 422 AIVSNMRCE-PSAVVWRTLLGACRTHGNMTLGKLVREKLLNMNEDASADYVLLSGIYASS 480
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
+ E RR +D R K G + +
Sbjct: 481 GEWLGVETERRSMDRRGIRKAAGYAQI 507
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 126/315 (40%), Gaps = 63/315 (20%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G + YAR +F+ +P ++ ++ GY A A++RRM P T +
Sbjct: 47 GRMGYARKVFDGIPRPDLFMHNAMVRGYAHAGAPGDAFAVYRRMTEASRLRPDAFTFCYL 106
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFE------ 144
A R + +HG K GF +V N LI+ +AKCG + A L +
Sbjct: 107 LRACAGLPGSRAGRQVHGAVVKLGFLK-DAYVRNALINMFAKCGDLRVASVLLDEAGEGD 165
Query: 145 ---------------DISVERK-------------------------------------- 151
D++ RK
Sbjct: 166 VVAWSAVIAGHAARGDMAAARKMFDECTHKDIVCWNVMLGAYAKHGEMENARELFDRAPE 225
Query: 152 -NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
++VSW +II+G+A GM K A+E F+ M+ P+ T +S+L+ C++ GL++ G
Sbjct: 226 KDVVSWNTIITGYAAQGMLKHALEVFDEMRAAGWTPDEATIVSLLSCCANTGLLDAGRMI 285
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
++ E I L+ M + G L A + + + T+V W +++G +FH
Sbjct: 286 HHQLHLERRPWISIVVGNALVSMYAKCGDLHTAVEGFNTMKD--TDVWTWNSVIGGLAFH 343
Query: 271 GNVEMGERVTRKILE 285
G E R +K+LE
Sbjct: 344 GQAEQSVRFFKKMLE 358
>gi|115441777|ref|NP_001045168.1| Os01g0912900 [Oryza sativa Japonica Group]
gi|20161377|dbj|BAB90301.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113534699|dbj|BAF07082.1| Os01g0912900 [Oryza sativa Japonica Group]
gi|125573076|gb|EAZ14591.1| hypothetical protein OsJ_04514 [Oryza sativa Japonica Group]
Length = 533
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 124/330 (37%), Positives = 191/330 (57%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ ++FD++P R+ +W+V+I G K G + AR +F+ MP +N+V+WT +I+GY +
Sbjct: 195 VSSARRVFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQS 254
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+LALFR M A EP T++ V A Q G + Y +K+ +
Sbjct: 255 GVPKESLALFREMEAAG-IEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIER-NDK 312
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V L+D +AKCG + AL F +I+ + + +T++ISG A HG K A++ FERMQ
Sbjct: 313 VLTALVDMHAKCGNVDEALSAFREIA--QPDAYPYTALISGLAAHGHAKLALQVFERMQA 370
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ P+ +TF+ VL ACSH GLV++GL +++ MV+ + HY C++DMLGRAGRLE
Sbjct: 371 QSVWPDPITFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLE 430
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++ +P + LL AC HGNVE+ E V K+ E+E G+Y+++ NI
Sbjct: 431 EAFEMVQTMPMG-PHPGALGALLSACKTHGNVEIAEIVANKLFELEPHNTGNYIMLSNIY 489
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ +AER+R V+ R K PG S V
Sbjct: 490 AEKEQWEEAERIRSVMRTRLPFKQPGSSWV 519
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 114/268 (42%), Gaps = 46/268 (17%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
+ V++N ++ + + A SLF MP R VSW ++ Y + A +F +M
Sbjct: 147 DAVSFNSLLCAHARLASVPDAESLFVAMPSRTQVSWNAMVVVYVNAGDVSSARRVFDQMP 206
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
+ T W + LI Y KCG
Sbjct: 207 TRDSTS-------------W----------------------------SVLIVGYCKCGS 225
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ SA ++F+ + KNLV+WT++I+G+A G+ KE++ F M+ ++P+ T + V+
Sbjct: 226 MRSAREVFDRMPA--KNLVAWTAMINGYAQSGVPKESLALFREMEAAGIEPDAATMVGVI 283
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+A S G E + V++ + + K L+DM + G +++A I
Sbjct: 284 SAASQIGSTELA-GWVGSYVDKKRIERNDKVLTALVDMHAKCGNVDEALSAFREIAQ--P 340
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKI 283
+ + L+ + HG+ ++ +V ++
Sbjct: 341 DAYPYTALISGLAAHGHAKLALQVFERM 368
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 83/195 (42%), Gaps = 21/195 (10%)
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+ V+N L+D YAKC + +A DI+ + VS+ S++ A +A F
Sbjct: 117 LPVANALVDLYAKCDDLPAAHTALADIAA--PDAVSFNSLLCAHARLASVPDAESLF--- 171
Query: 180 QKVVLKPNR--VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
V P+R V++ +++ + G V + FD+M D + LI +
Sbjct: 172 ---VAMPSRTQVSWNAMVVVYVNAGDVSSARRVFDQMPTR-----DSTSWSVLIVGYCKC 223
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME-RGYGGDYVL 296
G + A +V +P++ N+V W ++ + G + + R EME G D
Sbjct: 224 GSMRSAREVFDRMPAK--NLVAWTAMINGYAQSGVPKESLALFR---EMEAAGIEPDAAT 278
Query: 297 MYNILAGVWRYGDAE 311
M +++ + G E
Sbjct: 279 MVGVISAASQIGSTE 293
>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 201/337 (59%), Gaps = 12/337 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEY---ARSLFEEMPCRNVVSWTGIIDGY 58
++D KLFDE P + V+WN ++ G VK G++ A LF EM +++VSW+ +I GY
Sbjct: 180 MRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGY 239
Query: 59 TRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF 118
+ AL +F M A E+ +++V A V+ ++IHG + G ++
Sbjct: 240 EQNGMYEEALVMFIEMNA-NGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESY 298
Query: 119 HIHVSNCLI----DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVE 174
+++ N LI D Y KCGC+ +AL++F +E K + SW ++I G A++G+ + +++
Sbjct: 299 -VNLQNALIHMYSDMYMKCGCVENALEVFN--GMEEKGVSSWNALIIGLAVNGLVERSLD 355
Query: 175 NFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDML 234
F M+ + PN +TF+ VL AC H GLV+EG F M+E+ + P++KHYGC++D+L
Sbjct: 356 MFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLL 415
Query: 235 GRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY 294
GRAG L +AEK+ +P +V W LLGAC HG+ EMGERV RK++E++ + G +
Sbjct: 416 GRAGLLNEAEKLIESMPMA-PDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFH 474
Query: 295 VLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
VL+ NI A + D +R ++ ++ +K PG SL+
Sbjct: 475 VLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLI 511
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 57/286 (19%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
L+Y+ +F+ + N W ++ Y + N + AL L++ MV P T +P
Sbjct: 79 LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVK-NNVGPDNYT----YP 133
Query: 93 AIWQNGDVRNCQL----IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
+ Q VR + IH + K GF++ ++V N LI+ YA CG + A KLF++ V
Sbjct: 134 LVVQACAVRLLEFGGKEIHDHVLKVGFDS-DVYVQNTLINMYAVCGNMRDARKLFDESPV 192
Query: 149 --------------------------------ERKNLVSWTSIISGFAMHGMGKEAVENF 176
+ K++VSW+++ISG+ +GM +EA+ F
Sbjct: 193 LDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMF 252
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY----GCLI- 231
M ++ + V +SVL+AC+H +V+ G KM+ + I+ Y LI
Sbjct: 253 IEMNANGMRLDEVVVVSVLSACAHLSIVKTG-----KMIHGLVIRMGIESYVNLQNALIH 307
Query: 232 ---DMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
DM + G +E A +V +G+ E V W L+ + +G VE
Sbjct: 308 MYSDMYMKCGCVENALEVFNGM--EEKGVSSWNALIIGLAVNGLVE 351
>gi|356527575|ref|XP_003532384.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61800-like [Glycine max]
Length = 577
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 126/331 (38%), Positives = 193/331 (58%), Gaps = 6/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ D KLF E P ++V++N +I GLVK ++ AR LF+EMP R+ +SW +I GY+ +
Sbjct: 160 VNDAHKLFYECPHGDVVSYNALIHGLVKTRQISRARELFDEMPVRDEISWGTMIAGYSHL 219
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
N A+ LF M+ E +P I +++V A Q G++ ++H Y KR +
Sbjct: 220 KLCNQAIELFNEMMRLE-VKPDNIALVSVLSACAQLGELEQGSIVHDY-IKRNRIRVDSY 277
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
++ L+D YAKCGC+ +A +FE S K + +W +++ GFA+HG G +E F RM
Sbjct: 278 LATGLVDLYAKCGCVETARDVFE--SCMEKYVFTWNAMLVGFAIHGEGSMVLEYFSRMVS 335
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KP+ VT L VL CSH GLV E + FD+M V + KHYGC+ DML RAG +E
Sbjct: 336 EGVKPDGVTLLGVLVGCSHAGLVLEARRIFDEMENVYGVKREGKHYGCMADMLARAGLIE 395
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+ ++ +PS +V W LLG C HGNVE+ ++ ++++E++ GG Y +M NI
Sbjct: 396 EGVEMVKAMPSG-GDVFAWGGLLGGCRIHGNVEVAKKAAQQVMEIKPEDGGVYSVMANIY 454
Query: 302 AGVWRYGDAERLRRVVD-ERNALKFPGRSLV 331
A ++ D ++RR + + A K GRSL+
Sbjct: 455 AHTEQWDDLVKVRRSLSANKRAKKITGRSLI 485
>gi|356522492|ref|XP_003529880.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g08510-like [Glycine max]
Length = 474
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 120/330 (36%), Positives = 191/330 (57%), Gaps = 3/330 (0%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ KLFDE+P R + WN M+ GL ++G+++ A LF MP RNVV WT +I GY+
Sbjct: 98 LELARKLFDEMPVRGVPRWNAMMAGLARFGDMDGALELFXSMPSRNVVPWTTMISGYSWN 157
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ + AL LF M + P+ +T++++ PA + Q + Y K GF + +
Sbjct: 158 KQYDKALGLFLGMEQEKGIMPNAVTLVSILPACANLXALEIGQRVEAYARKNGFFK-NXY 216
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
SN +++ Y KCG I +A ++F +I R NL SW S++ G A+HG +A+E +++M
Sbjct: 217 ASNAVLEMYVKCGKIDAAWRVFNEIGSLR-NLCSWNSMVVGLAVHGECCKALELYDQMLG 275
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
P+ VTF+ +L AC+ GG+V++G F ++P ++HYGC++D+LGRAG+L
Sbjct: 276 EGTSPDDVTFVGLLLACTQGGMVKKGRHIFKSKTTSFYIIPKLEHYGCMVDLLGRAGQLR 335
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A +V + S + V+W LLGACSFHGNVE+ E + +E G+YV++ NI
Sbjct: 336 EAYEVIQSM-SMKPDSVIWGALLGACSFHGNVELAEIAAESLFVLEPWNPGNYVILSNIY 394
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ +LR+V+ K G S +
Sbjct: 395 ASAGQWDGVAKLRKVMKGSKITKSAGHSFI 424
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 100/220 (45%), Gaps = 33/220 (15%)
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
P++ T +F A Q++H + K GF + + L+D YAK G + A K
Sbjct: 45 PNQHTFNFLFSACTSLSSSSLGQMLHTHFIKSGFEP-DLFAATALLDMYAKVGALELARK 103
Query: 142 LFEDI-----------------------------SVERKNLVSWTSIISGFAMHGMGKEA 172
LF+++ S+ +N+V WT++ISG++ + +A
Sbjct: 104 LFDEMPVRGVPRWNAMMAGLARFGDMDGALELFXSMPSRNVVPWTTMISGYSWNKQYDKA 163
Query: 173 VENFERM-QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLI 231
+ F M Q+ + PN VT +S+L AC++ +E G + + + + ++
Sbjct: 164 LGLFLGMEQEKGIMPNAVTLVSILPACANLXALEIGQR-VEAYARKNGFFKNXYASNAVL 222
Query: 232 DMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+M + G+++ A +V + I S + N+ W +++ + HG
Sbjct: 223 EMYVKCGKIDAAWRVFNEIGS-LRNLCSWNSMVVGLAVHG 261
>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 196/330 (59%), Gaps = 3/330 (0%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++ K+FDE+ RN +WNV+I G G L R +F+ M CRNV SWT +I+GY
Sbjct: 175 FEESRKVFDEMTIRNSGSWNVLIAGYAVSGNLVVGRRVFDRMKCRNVFSWTAMINGYVEN 234
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
S+ AL+LFR M + EP+ +++++V PA + + + IHG+ ++ N +
Sbjct: 235 GDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNN-EVS 293
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N LID Y+KCG + SA ++FED S+ K+ +SW+S+ISG+ +HG G+EA+ +++M +
Sbjct: 294 LCNALIDMYSKCGSLDSARRVFEDDSL-CKDAISWSSMISGYGLHGKGQEAILLYDKMLQ 352
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++P+ +T + +L+ACS GLV EGL + ++ + + P ++ + C++DMLGRAG+L+
Sbjct: 353 AGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLD 412
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A +P E VW L+ HG++EM E R ++++E +YV + N+
Sbjct: 413 PALDFIKAMPVE-PGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEPENPSNYVSISNLY 471
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ +RR++ ++ K PG S +
Sbjct: 472 ASSRRWDAVAEVRRMMKDKRLRKVPGCSWI 501
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 139/304 (45%), Gaps = 36/304 (11%)
Query: 35 YARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAI 94
++R +F+ + +NV W +I+GY + N A LF +M + + P + T+ +
Sbjct: 76 HSRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVL-PDDFTLSTLSKVS 134
Query: 95 WQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER---- 150
+ G + + + IHG + GF + + V+N ++ Y KCG + K+F+++++
Sbjct: 135 SELGALFSGKSIHGKSIRIGFVSDTV-VANSIMSMYCKCGNFEESRKVFDEMTIRNSGSW 193
Query: 151 -------------------------KNLVSWTSIISGFAMHGMGKEAVENFERMQKVV-L 184
+N+ SWT++I+G+ +G EA+ F MQ + +
Sbjct: 194 NVLIAGYAVSGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGI 253
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
+PNRV+ +SVL ACS + G + V + E+ ++ LIDM + G L+ A
Sbjct: 254 EPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRK-ELNNEVSLCNALIDMYSKCGSLDSAR 312
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+V S + + W +++ HG + + K+L+ G D + IL+
Sbjct: 313 RVFED-DSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQA--GIRPDMITTVGILSAC 369
Query: 305 WRYG 308
R G
Sbjct: 370 SRSG 373
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 5/154 (3%)
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
LI YA C + + +F+ S++ KN+ W S+I+G+A + + EA + F +M +
Sbjct: 64 LIFAYAICQHPYHSRLVFD--SLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVL 121
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
P+ T ++ S G + G K + + D ++ M + G E++ K
Sbjct: 122 PDDFTLSTLSKVSSELGALFSGKSIHGKSI-RIGFVSDTVVANSIMSMYCKCGNFEESRK 180
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERV 279
V + I N W L+ + GN+ +G RV
Sbjct: 181 VFDEM--TIRNSGSWNVLIAGYAVSGNLVVGRRV 212
>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
Length = 688
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 131/330 (39%), Positives = 200/330 (60%), Gaps = 9/330 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L +FD E+N+V+W MI+ + G +E AR +F++MP +NVVSW +I Y R
Sbjct: 312 LHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLRE 371
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY-GEKRGFNAFHI 120
+ AL LF +M P E T++++ A Q GD+ + IH Y +G A+ +
Sbjct: 372 GQYREALDLFNKMRNSRVV-PDEATLVSILAACSQLGDLVMGKKIHNYILSNKG--AYGV 428
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+ N LID YAKCG + +AL +F + + KNLVSW II A+HG G EA++ FE MQ
Sbjct: 429 TLYNSLIDMYAKCGPVVTALDIF--LEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQ 486
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
P+ +T +L+ACSH GLV+ GL +FD+M V +I+HY C++D+LGR G L
Sbjct: 487 ADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVXREIEHYACMVDLLGRGGLL 546
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
+A ++ +P + +VVVW LLGAC HGNVE+G+++ +++LE+E GG YVL+ NI
Sbjct: 547 GEAIELIGRMPMK-PDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNI 605
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSL 330
R+ D +++R+++ +R K GR++
Sbjct: 606 YWEAQRWEDVKKIRKLMIDRGIKK--GRAI 633
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 152/324 (46%), Gaps = 48/324 (14%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G+L+YA+ +F+++P N + +I GY+ + A+ LFRRM+ C P+E T+ V
Sbjct: 162 GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMI-CSGLSPNEFTLPFV 220
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A L+HG K G + + V N LI Y CG I A KLF+DI+
Sbjct: 221 LKACGCKSAYWEAVLVHGLAIKLGIGSL-VFVQNALIAVYVVCGLIHCARKLFDDIT--D 277
Query: 151 KNLVSWTSII----------------SGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
K LVSW S+I +A G A F+R Q + N V++ S+
Sbjct: 278 KTLVSWNSMIEITGVKIDIIVRNALXDMYAKCGNLHSAQAIFDRTQ----EKNVVSWTSM 333
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV------AS 248
++A + G +E + FD+M + ++ + +I R G+ +A + +
Sbjct: 334 ISAYAQHGSIEVARQIFDQMPGK-----NVVSWNSMISCYLREGQYREALDLFNKMRNSR 388
Query: 249 GIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
+P E T V ++L ACS G++ MG+++ IL + YG V +YN L ++
Sbjct: 389 VVPDEATLV----SILAACSQLGDLVMGKKIHNYILSNKGAYG---VTLYNSLIDMY--- 438
Query: 309 DAERLRRVVDERNA-LKFPGRSLV 331
+ VV + L+ PG++LV
Sbjct: 439 --AKCGPVVTALDIFLEMPGKNLV 460
>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
Length = 579
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 121/330 (36%), Positives = 191/330 (57%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D LFD +P R++VTW MI G K G + A++LF++MP R+VV++ ++ GY +
Sbjct: 234 IEDAKDLFDMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVAYNSMMAGYVQN 293
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL +F M + P E T++ V AI Q G + +H Y ++ F
Sbjct: 294 RFHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQF-LLGGK 352
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LID Y+KCG I A+ +FE I E K++ W ++I G A+HG+G+ A + ++++
Sbjct: 353 LGVALIDMYSKCGSIQHAMLVFEGI--ENKSIDHWNAMIGGLAIHGLGESAFDMLLQIER 410
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KP+ +TF+ VLNACSH GLV+EGL F+ M + ++ P ++HYGC++D+L R+G +E
Sbjct: 411 RSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIE 470
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A+ + +P E N V+WRT L ACS H E GE V + ++ YVL+ N+
Sbjct: 471 LAKNLIEEMPIE-PNDVIWRTFLTACSHHKEFETGELVAKHLILQADYNPSSYVLLSNMY 529
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + D R+R ++ ER K PG S +
Sbjct: 530 ASFGMWKDVRRVRTMMKERKIEKIPGCSWI 559
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 145/286 (50%), Gaps = 22/286 (7%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDGYTRMNRS 64
++FD +P+R+ V++N MI G VK G +E A LF+ MP +N++SW +I GY + +
Sbjct: 143 QIFDRMPQRDSVSYNSMIDGYVKCGSIESASELFDLMPREMKNLISWNSLISGYAQTSEG 202
Query: 65 -NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
+ A LF E E I+ ++ ++G + + + + +R +
Sbjct: 203 VDIASKLF-----AEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDMVPRRDVVTW----- 252
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
+ID YAK G + A LF+ + +++V++ S+++G+ + EA+E F M+K
Sbjct: 253 ATMIDGYAKLGFVHQAKTLFDQMP--HRDVVAYNSMMAGYVQNRFHMEALEIFSDMEKES 310
Query: 184 -LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
L P+ T + VL+A + G + + + +VE+ + L K LIDM + G ++
Sbjct: 311 HLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEK-QFLLGGKLGVALIDMYSKCGSIQH 369
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
A V GI E ++ W ++G + HG +GE +L++ER
Sbjct: 370 AMLVFEGI--ENKSIDHWNAMIGGLAIHG---LGESAFDMLLQIER 410
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 116/238 (48%), Gaps = 22/238 (9%)
Query: 34 EYARSLFEEM----PCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP-SEITIL 88
E+AR +F E + W +I ++ AL LF M+ E P + ++
Sbjct: 34 EFARFVFHEYHYGGEVEDPYLWNAMIKSHSHGTDPRRALLLFCLML--EIGVPVDKFSLS 91
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
V A + G V+ IHG+ +K G + + + NCLI Y KCGC+ A ++F+ +
Sbjct: 92 LVMKACSRLGFVKGGLQIHGFLKKTGLWS-DLFLQNCLIGLYLKCGCLGFARQIFD--RM 148
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
+++ VS+ S+I G+ G + A E F+ M + + N +++ S+++ + EG+
Sbjct: 149 PQRDSVSYNSMIDGYVKCGSIESASELFDLMPREM--KNLISWNSLISGYAQ---TSEGV 203
Query: 209 KFFDKMVEECEVLP--DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
K+ E +P D+ + +ID + GR+E A+ + +P +VV W T++
Sbjct: 204 DIASKLFAE---MPEKDLISWNSMIDGYVKHGRIEDAKDLFDMVPRR--DVVTWATMI 256
>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 121/331 (36%), Positives = 192/331 (58%), Gaps = 3/331 (0%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ D KLFD++ R++ +WN +I G +K GE+ A LFE M RN+VSWT +I GYT+
Sbjct: 158 IGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQN 217
Query: 62 NRSNGALALFRRMVA-CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+ AL LF M+ +P+ +TI++V PA Q+ + + IH + G + +
Sbjct: 218 GFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLH-LNS 276
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V L YAKC + A F+ I+ KNL++W ++I+ +A HG G EAV FE M
Sbjct: 277 SVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENML 336
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ ++P+ VTF+ +L+ CSH GL++ GL F+ M V P ++HY C++D+LGRAGRL
Sbjct: 337 RAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRL 396
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
+A+++ S +P + VW LL AC H N+E+ E R++ +E G+YVL+ N+
Sbjct: 397 VEAKELISQMPMQ-AGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNL 455
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + + ++LR ++ + K PG S +
Sbjct: 456 YAEAGMWEEVKKLRALLKYQGMKKSPGCSWI 486
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 85/197 (43%), Gaps = 33/197 (16%)
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV----------------- 148
+HG G + G +V LID Y KCG I A KLF+ + V
Sbjct: 129 VHGQGLRVGLEG-DFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEG 187
Query: 149 ------------ERKNLVSWTSIISGFAMHGMGKEAVENFERMQK--VVLKPNRVTFLSV 194
E +N+VSWT++ISG+ +G ++A+ F+ M + +KPN VT +SV
Sbjct: 188 EIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSV 247
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L AC+ +E G + D + + L M + L +A I
Sbjct: 248 LPACAQSAALERGRRIHD-FANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNG 306
Query: 255 TNVVVWRTLLGACSFHG 271
N++ W T++ A + HG
Sbjct: 307 KNLIAWNTMITAYASHG 323
>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 131/330 (39%), Positives = 200/330 (60%), Gaps = 9/330 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L +FD E+N+V+W MI+ + G +E AR +F++MP +NVVSW +I Y R
Sbjct: 173 LHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLRE 232
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY-GEKRGFNAFHI 120
+ AL LF +M P E T++++ A Q GD+ + IH Y +G A+ +
Sbjct: 233 GQYREALDLFNKMRNSRVV-PDEATLVSILAACSQLGDLVMGKKIHNYILSNKG--AYGV 289
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+ N LID YAKCG + +AL +F + + KNLVSW II A+HG G EA++ FE MQ
Sbjct: 290 TLYNSLIDMYAKCGPVVTALDIF--LEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQ 347
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
P+ +T +L+ACSH GLV+ GL +FD+M V +I+HY C++D+LGR G L
Sbjct: 348 ADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLL 407
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
+A ++ +P + +VVVW LLGAC HGNVE+G+++ +++LE+E GG YVL+ NI
Sbjct: 408 GEAIELIGRMPMK-PDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNI 466
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSL 330
R+ D +++R+++ +R K GR++
Sbjct: 467 YWEAQRWEDVKKIRKLMIDRGIKK--GRAI 494
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 130/304 (42%), Gaps = 68/304 (22%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G+L+YA+ +F+++P N + +I GY+ + A+ LFRRM+ C P+E T+ V
Sbjct: 36 GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMI-CSGLSPNEFTLPFV 94
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS--- 147
A L+HG K G + + V N LI Y CG I A KLF+DI+
Sbjct: 95 LKACGCKSAYWEAVLVHGLAIKLGIGSL-VFVQNALIAVYVVCGLIHCARKLFDDITDKT 153
Query: 148 -----------------------------VERKNLVSWTSIISGFAMH------------ 166
+ KN+VSWTS+IS +A H
Sbjct: 154 LIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQ 213
Query: 167 -------------------GMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEG 207
G +EA++ F +M+ + P+ T +S+L ACS G + G
Sbjct: 214 MPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMG 273
Query: 208 LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC 267
K + ++ + + Y LIDM + G + A + +P + N+V W ++GA
Sbjct: 274 KKIHNYILSN-KGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGK--NLVSWNVIIGAL 330
Query: 268 SFHG 271
+ HG
Sbjct: 331 ALHG 334
>gi|297721835|ref|NP_001173281.1| Os03g0169300 [Oryza sativa Japonica Group]
gi|19071631|gb|AAL84298.1|AC073556_15 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
gi|108706397|gb|ABF94192.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125585070|gb|EAZ25734.1| hypothetical protein OsJ_09569 [Oryza sativa Japonica Group]
gi|215769145|dbj|BAH01374.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255674238|dbj|BAH92009.1| Os03g0169300 [Oryza sativa Japonica Group]
Length = 510
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 124/330 (37%), Positives = 197/330 (59%), Gaps = 12/330 (3%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
D ++FDE+P R++++++ ++T +K +L+ AR +F++MP R+VVSWT +I Y R R
Sbjct: 179 DARRVFDEMPARDVISFSGLLTLHLKANDLDAARVVFDQMPHRDVVSWTAMISAYARARR 238
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
ALALF M +P E+T+L+V A GD+ + + Y + GF + + +
Sbjct: 239 PQEALALFDAMP----VQPDEVTMLSVVSACTALGDLATGERVCQYVDSNGFG-WMVSLR 293
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM--QK 181
N L+D YAKCG + A LF+ ++V ++L SW + IS +A HG + V F RM
Sbjct: 294 NALMDMYAKCGSLTEARNLFDGMTV--RSLASWNTFISAYASHGDVESTVALFHRMLADG 351
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVE--ECEVLPDIKHYGCLIDMLGRAGR 239
+KP+ T L+VL A +H G VEEG F+ ++ +V I+HYGC++D+LGRAG+
Sbjct: 352 KSVKPDGTTLLAVLTAYAHKGFVEEGRAMFNAILSGNYGKVDLTIEHYGCMVDLLGRAGQ 411
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
LE+A K+ +P +N VVW LLGAC HG++ M ER +K+ + GG Y+L+ +
Sbjct: 412 LEEAYKMIEQMPIP-SNSVVWGALLGACRTHGDINMAERAVQKLRSLNPEEGGYYILLSD 470
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRS 329
+ A R +A +RR++++ A K G+S
Sbjct: 471 MYAASGRTTEAMEIRRIMNQAGARKTAGQS 500
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 69/187 (36%), Gaps = 44/187 (23%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + LFD + R+L +WN I+ G++E +LF M + DG +
Sbjct: 306 LTEARNLFDGMTVRSLASWNTFISAYASHGDVESTVALFHRM----------LADGKS-- 353
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVR------NCQLIHGYGEKRGF 115
+P T+LAV A G V N L YG+
Sbjct: 354 ------------------VKPDGTTLLAVLTAYAHKGFVEEGRAMFNAILSGNYGKVD-- 393
Query: 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKEA 172
I C++D + G + A K+ E + + N V W +++ HG M + A
Sbjct: 394 --LTIEHYGCMVDLLGRAGQLEEAYKMIEQMPIP-SNSVVWGALLGACRTHGDINMAERA 450
Query: 173 VENFERM 179
V+ +
Sbjct: 451 VQKLRSL 457
>gi|224133278|ref|XP_002321528.1| predicted protein [Populus trichocarpa]
gi|222868524|gb|EEF05655.1| predicted protein [Populus trichocarpa]
Length = 450
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 190/313 (60%), Gaps = 7/313 (2%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ + ++E +R LFEE+P +V+W IID + + N AL +F RM+
Sbjct: 127 NTLVHMYGTFKDIEASRQLFEEIPNPELVAWNIIIDCHVSCGKFNEALEMFSRMLKFG-I 185
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
EP E T + + A G + + +H G V+N L+D YAKCG + A
Sbjct: 186 EPDEATFVVILSACSALGALDFGRWVHSCISNIGHGCI-TEVNNSLLDMYAKCGALQEAF 244
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFLSVLNACS 199
++F ++ +KN V+W ++I G A HG EA+ F M ++ + P+ +TFL VL+ACS
Sbjct: 245 EIFNGMN--KKNTVTWNTMILGLASHGYANEALALFSNMLEQKLWAPDDITFLVVLSACS 302
Query: 200 HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVV 259
HGG+V++G +FFD M +E + P IKHYGC++D+LGRAG +E+A ++ S +P + N +V
Sbjct: 303 HGGMVDKGWRFFDIMKKEYHIQPTIKHYGCMVDILGRAGFVEEAYRLISNMPMQ-CNAIV 361
Query: 260 WRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319
WRTLL AC HGNVE+G++V +++LE+E + DYVL+ N A R+ +A R+R+ + +
Sbjct: 362 WRTLLAACRLHGNVELGKQVRKQLLELEPDHSSDYVLLANTYASAGRWNEAMRVRKTMHK 421
Query: 320 RNALKF-PGRSLV 331
R K PG S+V
Sbjct: 422 RGVQKPEPGNSVV 434
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 141/304 (46%), Gaps = 22/304 (7%)
Query: 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTE 81
++ + G++ YA S+FE++ + + +I G+ + N A ++RM
Sbjct: 27 IVFCAAAEHGDMNYAVSVFEKIGDPDAFIFNTMIRGFGKANDPRKAFDYYKRMQERGLVS 86
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
S T + Q G V +L+H KRG N+ H+ V N L+ Y I ++ +
Sbjct: 87 DS-FTFSFLLKVCGQLGLVLLGRLMHCSTLKRGLNS-HVFVRNTLVHMYGTFKDIEASRQ 144
Query: 142 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHG 201
LFE+I LV+W II G EA+E F RM K ++P+ TF+ +L+ACS
Sbjct: 145 LFEEIP--NPELVAWNIIIDCHVSCGKFNEALEMFSRMLKFGIEPDEATFVVILSACSAL 202
Query: 202 GLVEEGLKFFDKMVEECEVLPDIKHYGC-------LIDMLGRAGRLEQAEKVASGIPSEI 254
G ++ F + V C + +I H GC L+DM + G L++A ++ +G+ +
Sbjct: 203 GALD-----FGRWVHSC--ISNIGH-GCITEVNNSLLDMYAKCGALQEAFEIFNGMNKK- 253
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLR 314
N V W T++ + HG + +LE ++ + D + +L+ G ++
Sbjct: 254 -NTVTWNTMILGLASHGYANEALALFSNMLE-QKLWAPDDITFLVVLSACSHGGMVDKGW 311
Query: 315 RVVD 318
R D
Sbjct: 312 RFFD 315
>gi|357455473|ref|XP_003598017.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355487065|gb|AES68268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 479
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 126/318 (39%), Positives = 193/318 (60%), Gaps = 14/318 (4%)
Query: 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT- 80
+ + G++K ++E A LFEEM N+VSW IID + + N A+ LF +MV ++
Sbjct: 152 IHMYGMLK--DIEIAHQLFEEMYQPNLVSWNSIIDCHVYCGKYNEAIDLFTKMVQQQHNG 209
Query: 81 ---EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF--HIHVSNCLIDTYAKCGC 135
+P T++ A G + + +H + + G N+F I V N L+D YAKCG
Sbjct: 210 MELQPDHATLVVTLSACGAIGSLDFGRKVHSF-VRDGVNSFGESISVFNALVDMYAKCGA 268
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFLSV 194
+ A + F ++ +RKN+VSW +I GFA HG G+EA+ F RM + V +P+ +TFL V
Sbjct: 269 VEEAYETFSNM--KRKNVVSWNVMILGFASHGNGEEALALFTRMLHENVERPDEITFLCV 326
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L ACSHGGLV+EG ++F+ M + + P IKHYGC++D+LGRAG +A ++ +P E
Sbjct: 327 LCACSHGGLVDEGRRYFEIMNRDYNIKPTIKHYGCMVDLLGRAGLFVEAYELIKSMPVE- 385
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLR 314
N ++WRTLL AC +GNVE+GE+V + ++E+E + DYVL+ N+ A ++ + + R
Sbjct: 386 CNAIIWRTLLAACRNYGNVELGEKVRKHLMELEPDHSSDYVLLANMYASTGQWNEMSKER 445
Query: 315 RVVDERNALKF-PGRSLV 331
R + ER K PG S +
Sbjct: 446 RSMQERRVRKPEPGNSFI 463
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 76/170 (44%), Gaps = 11/170 (6%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
F++DG F E ++ +N ++ K G +E A F M +NVVSW +I G+
Sbjct: 241 FVRDGVNSFGE----SISVFNALVDMYAKCGAVEEAYETFSNMKRKNVVSWNVMILGFAS 296
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGE--KRGFN-A 117
ALALF RM+ P EIT L V A G V + Y E R +N
Sbjct: 297 HGNGEEALALFTRMLHENVERPDEITFLCVLCACSHGGLVDEGR---RYFEIMNRDYNIK 353
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 167
I C++D + G A +L + + VE N + W ++++ +G
Sbjct: 354 PTIKHYGCMVDLLGRAGLFVEAYELIKSMPVE-CNAIIWRTLLAACRNYG 402
>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14820-like, partial [Brachypodium
distachyon]
Length = 498
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 120/325 (36%), Positives = 191/325 (58%), Gaps = 5/325 (1%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
K++ + ++LV+ M+ G K G++E ARS+F M ++VVSW+ +I Y N+
Sbjct: 148 ADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAENNQP 207
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
+ L LF +M C + P EIT+L+V A G + + IH GF + + N
Sbjct: 208 SEVLNLFNKMQGCGVS-PDEITMLSVISACANIGSLDKARWIHSIVGNHGFYKI-LSICN 265
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LID ++KCG + AL +F ++ RKN+++WTS+I+ FAMHG G A+ F +M+ +
Sbjct: 266 ALIDMFSKCGSLTLALNMFN--AMPRKNVITWTSMIAAFAMHGDGPSALTLFGQMKGEGV 323
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
+PN VTFL +L AC H GLV EG F+ M++E + P +HYGC++D++GRA +++A
Sbjct: 324 EPNGVTFLVLLYACCHAGLVYEGRSLFECMLQEYRIEPKHEHYGCMVDLMGRAKLMQEAV 383
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+ + NV +W +LL AC HG++E+GE +KILE++ + G YVL+ NI A
Sbjct: 384 DLIESMHIR-PNVAIWGSLLAACWMHGDIELGEFAAKKILELDPNHDGAYVLLSNIHAKS 442
Query: 305 WRYGDAERLRRVVDERNALKFPGRS 329
+ +A++LR ++ K G S
Sbjct: 443 GNWNNAQKLRVMMKVHGVSKETGYS 467
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 124/277 (44%), Gaps = 19/277 (6%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIID----- 56
+ + ++FD +PER+LV W VM+ L +M VV I+
Sbjct: 44 VAEARRVFDGMPERDLVAWGVMLDSYFNTQNYRETLLLLNKMKRSRVVPDQVILATVLST 103
Query: 57 -GYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF 115
G+TR RS + Y + S+I + A + N + G
Sbjct: 104 CGHTRHLRSGKTIH--------SYIQVSDIFVDARLSSALINMYASCMDMEMADKIYSGM 155
Query: 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
+ S ++ YAK G I A +F ++ K++VSW+++IS +A + E +
Sbjct: 156 QRKDLVSSTAMVCGYAKNGKIEIARSIFNHMA--EKDVVSWSAMISAYAENNQPSEVLNL 213
Query: 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
F +MQ + P+ +T LSV++AC++ G +++ ++ +V + LIDM
Sbjct: 214 FNKMQGCGVSPDEITMLSVISACANIGSLDKA-RWIHSIVGNHGFYKILSICNALIDMFS 272
Query: 236 RAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
+ G L A + + +P + NV+ W +++ A + HG+
Sbjct: 273 KCGSLTLALNMFNAMPRK--NVITWTSMIAAFAMHGD 307
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 123/330 (37%), Positives = 197/330 (59%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ K+F + RN+VT N MI K ++ AR +F+++P ++++SW+ +I GY++
Sbjct: 239 LQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQA 298
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
N + AL +FR+M + +P I I +V + G + + +H Y + A I
Sbjct: 299 NHFSDALEIFRQMQRAK-VKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTI- 356
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N LID Y KCG AL++F+++ + K+ +SW SII G A +G KE++ F+ M
Sbjct: 357 MENSLIDMYMKCGSAKEALQVFKEM--KEKDTLSWNSIIIGLANNGFEKESLNLFQAMLT 414
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+PN VTFL VL AC++ LVEEGL F+ M + P +KHYGC++D+LGRAG+LE
Sbjct: 415 EGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLE 474
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + + +P + + VVWR LLG+C+ HG+V + E VT+K+ E+E G+Y L+ N
Sbjct: 475 KALRFITEMPID-PDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSNAY 533
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ +A +R+ + + + K PG S V
Sbjct: 534 ASAHRWSEAMNVRQCMADTDVRKSPGCSAV 563
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 142/279 (50%), Gaps = 38/279 (13%)
Query: 2 LKDGSKLFDELPERNLVT----WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDG 57
L +G ++ + + + L++ N +I G L YARS+F+EM ++VVSW +I G
Sbjct: 103 LNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICG 162
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGD-------VRNCQ------ 104
Y++ NR LALF+ M E + ++T++ V A + GD VR +
Sbjct: 163 YSQCNRFKDILALFKLM-QNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEV 221
Query: 105 -------LIHGYG--------EKRGFN--AFHIHVSNCLIDTYAKCGCIFSALKLFEDIS 147
L+ +G EK FN +I N +I YAK I SA K+F+ I
Sbjct: 222 DVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIP 281
Query: 148 VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEG 207
+K+L+SW+S+ISG++ +A+E F +MQ+ +KP+ + SV+++C+H G ++ G
Sbjct: 282 --KKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLG 339
Query: 208 LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
K+ + V + D LIDM + G ++A +V
Sbjct: 340 -KWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQV 377
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 93/219 (42%), Gaps = 14/219 (6%)
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYA--KCGCIFSALKLFEDISVERKNLVSWTSIISGF 163
+H Y G H +S L +YA + +F A K+F+ I E W +I G
Sbjct: 7 LHAYYIVSGLYNCHYAMSKVL-RSYAILQPDLVF-AHKVFDQI--EAPTTFLWNILIRGL 62
Query: 164 AMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD 223
A +A+ +++ Q + P+ +TF +L AC+ + EG + + + + +L D
Sbjct: 63 AQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNH-ITKLGLLSD 121
Query: 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
I LI + G L A V + + +VV W +L+ C + + +
Sbjct: 122 IFVSNSLIHLYAACGNLCYARSVFDEMV--VKDVVSWNSLI--CGYSQCNRFKDILALFK 177
Query: 284 LEMERGYGGDYVLMYNILAGVWRYGD---AERLRRVVDE 319
L G D V M +++ R GD A+ + R +++
Sbjct: 178 LMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIED 216
>gi|356561772|ref|XP_003549152.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Glycine max]
Length = 522
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 124/332 (37%), Positives = 197/332 (59%), Gaps = 7/332 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + K+FDE+ +R++V++ M++G + G++E A +F EM R+V SW +I G T+
Sbjct: 156 LGNAKKVFDEMSDRSVVSFTAMVSGFARVGDVESAVRVFGEMLDRDVPSWNALIAGCTQN 215
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ LFRRMV E P+ +T++ A G ++ + IHGY K G AF
Sbjct: 216 GAFTQGIELFRRMV-FECNRPNGVTVVCALSACGHMGMLQLGRWIHGYVYKNGL-AFDSF 273
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N L+D Y KCG + A K+FE K L SW S+I+ FA+HG A+ FE+M +
Sbjct: 274 VLNALVDMYGKCGSLGKARKVFE--MNPEKGLTSWNSMINCFALHGQSDSAIAIFEQMVE 331
Query: 182 VV--LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
++P+ VTF+ +LNAC+HGGLVE+G +F+ MV+E + P I+HYGCLID+LGRAGR
Sbjct: 332 GGGGVRPDEVTFVGLLNACTHGGLVEKGYWYFEMMVQEYGIEPQIEHYGCLIDLLGRAGR 391
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
++A V G+ E + VVW +LL C HG ++ E +K++E++ GG +++ N
Sbjct: 392 FDEAMDVVKGMSME-PDEVVWGSLLNGCKVHGRTDLAEFAAKKLIEIDPHNGGYRIMLAN 450
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ + ++ + + R + ++ + K PG S +
Sbjct: 451 VYGELGKWDEVRNVWRTLKQQKSYKVPGCSWI 482
>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
Length = 565
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 195/330 (59%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+K K FDE+PE+N+V++ MI G K G++ AR+LF++ P R++++W+ +I GYT+
Sbjct: 240 VKSAEKAFDEMPEKNVVSFTTMIDGYAKAGDMLSARNLFQKAPERDIIAWSALISGYTQN 299
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ N A+ F M + +P + + ++ A Q G++ + + Y + + H
Sbjct: 300 GQPNEAVKTFLEM-SSRNVKPDKFVLTSLMLACSQLGNLDLAKWVDSYATRCSVDLRGAH 358
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V+ LID AKCG + A+ LFE + +++L+S+ S++ G ++HG G +AV FERM
Sbjct: 359 VTAALIDMNAKCGNMERAMYLFEKM--PKRDLISYCSVMQGLSIHGHGDQAVSLFERMLG 416
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
L P+ V F +L ACS GLV+EG +F+ M + ++P + HY C++D+L R+GRL+
Sbjct: 417 EDLTPDDVAFTVILTACSRAGLVDEGWHYFEMMRCKYSMVPSVDHYACIVDLLSRSGRLK 476
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++ +P + ++ W LLGAC + + E+ E V +++E+E G+YVL+ NI
Sbjct: 477 EAYELIKSVPVQ-SHAGAWGALLGACKLYCDSELAEVVASRLIEIEPENAGNYVLLSNIY 535
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ D +R ++ER K PG S +
Sbjct: 536 AAADRWLDVSAVRNQMNERGLRKIPGCSWI 565
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 128/279 (45%), Gaps = 47/279 (16%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FD + ERN+V+W MI G G L A+ LF+ MP RNV SW II GY +M
Sbjct: 183 KVFDGMSERNVVSWTAMIVGYSSIGNLVEAKRLFDLMPERNVASWNAIIGGYMKM----- 237
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
GDV++ + ++ +F +
Sbjct: 238 -------------------------------GDVKSAEKAFDEMPEKNVVSF-----TTM 261
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YAK G + SA LF+ +++++W+++ISG+ +G EAV+ F M +KP
Sbjct: 262 IDGYAKAGDMLSARNLFQ--KAPERDIIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKP 319
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY-GCLIDMLGRAGRLEQAEK 245
++ S++ ACS G ++ K+ D C V H LIDM + G +E+A
Sbjct: 320 DKFVLTSLMLACSQLGNLDLA-KWVDSYATRCSVDLRGAHVTAALIDMNAKCGNMERAMY 378
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKIL 284
+ +P +++ + +++ S HG+ + + ++L
Sbjct: 379 LFEKMPKR--DLISYCSVMQGLSIHGHGDQAVSLFERML 415
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 129/290 (44%), Gaps = 20/290 (6%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
+ Y+ S+F+ + + W ++ GY + ++L+ RM E P T ++
Sbjct: 75 AHISYSTSVFDRVLSPSTFLWNSLVSGYCAKLQFVDIISLYVRMKR-EDGAPDRYTFPSL 133
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
G + +HG + G + I+V+ L++ Y K G I A K+F+ +S
Sbjct: 134 LKVCASEGKMMEGMALHGSILRCGVDE-DIYVTTSLVNLYGKGGLIDCARKVFDGMS--E 190
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
+N+VSWT++I G++ G EA F+ M + N ++ +++ G V+ K
Sbjct: 191 RNVVSWTAMIVGYSSIGNLVEAKRLFDLMP----ERNVASWNAIIGGYMKMGDVKSAEKA 246
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
FD+M E+ ++ + +ID +AG + A + P +++ W L+ + +
Sbjct: 247 FDEMPEK-----NVVSFTTMIDGYAKAGDMLSARNLFQKAPER--DIIAWSALISGYTQN 299
Query: 271 GNVEMGERVTRKILEM-ERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319
G + LEM R D ++ +++ + G+ + L + VD
Sbjct: 300 GQ---PNEAVKTFLEMSSRNVKPDKFVLTSLMLACSQLGNLD-LAKWVDS 345
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 14/174 (8%)
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215
W S++SG+ + + + RM++ P+R TF S+L C+ G + EG+ ++
Sbjct: 95 WNSLVSGYCAKLQFVDIISLYVRMKREDGAPDRYTFPSLLKVCASEGKMMEGMALHGSIL 154
Query: 216 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEM 275
C V DI L+++ G+ G ++ A KV G+ NVV W ++ S GN+
Sbjct: 155 -RCGVDEDIYVTTSLVNLYGKGGLIDCARKVFDGMSER--NVVSWTAMIVGYSSIGNLVE 211
Query: 276 GERVTRKILEMERGYGGDYVLMYN-ILAGVWRYGDAERLRRVVD---ERNALKF 325
+R+ L ER V +N I+ G + GD + + D E+N + F
Sbjct: 212 AKRLFD--LMPERN-----VASWNAIIGGYMKMGDVKSAEKAFDEMPEKNVVSF 258
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 116/325 (35%), Positives = 186/325 (57%), Gaps = 4/325 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ D LF+++ E+++V+W M+ G K G + A +F+ MP + +W +I Y +
Sbjct: 325 INDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQN 384
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ AL+LF M + +P E+T++ A Q G + IH Y +K N + H
Sbjct: 385 GKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDIN-LNCH 443
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
++ L+D YAKCG + A+++F +VERK++ W+++I AM+G GK A++ F M +
Sbjct: 444 LATSLLDMYAKCGNLNKAMEVFH--AVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLE 501
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPN VTF ++L AC+H GLV EG + F++M ++P I+HY C++D+ GRAG LE
Sbjct: 502 AYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLE 561
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A +P T VW LLGACS HGNVE+ E + +LE+E G +VL+ NI
Sbjct: 562 KAASFIEKMPIPPT-AAVWGALLGACSRHGNVELAELAYQNLLELEPCNHGAFVLLSNIY 620
Query: 302 AGVWRYGDAERLRRVVDERNALKFP 326
A + LR+++ + + K P
Sbjct: 621 AKAGDWEKVSNLRKLMRDSDVKKEP 645
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 138/302 (45%), Gaps = 39/302 (12%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
+L N +I G + A +F MP ++VVSW +I+ + + AL LF+ M
Sbjct: 207 DLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEM- 265
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
+ +P+ IT+++V A + D+ + I Y E GF H+ ++N ++D Y KCGC
Sbjct: 266 EMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTE-HLILNNAMLDMYVKCGC 324
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM---------------- 179
I A LF +S K++VSWT+++ G A G EA F+ M
Sbjct: 325 INDAKDLFNKMS--EKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYE 382
Query: 180 ----QKVVL------------KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD 223
+V L KP+ VT + L A + G ++ G + +++ ++ +
Sbjct: 383 QNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFG-HWIHVYIKKHDINLN 441
Query: 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
L+DM + G L +A +V + E +V VW ++GA + +G + + +
Sbjct: 442 CHLATSLLDMYAKCGNLNKAMEVFHAV--ERKDVYVWSAMIGALAMYGQGKAALDLFSSM 499
Query: 284 LE 285
LE
Sbjct: 500 LE 501
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 121/242 (50%), Gaps = 6/242 (2%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
L YA+++F ++P N+ W +I GY + + +F M+ P++ T +F
Sbjct: 122 LIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFK 181
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
A + + ++HG K ++ + + N LI+ Y G A ++F ++ K+
Sbjct: 182 AASRLKVLHLGSVLHGMVIKASLSS-DLFILNSLINFYGSSGAPDLAHRVFTNM--PGKD 238
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
+VSW ++I+ FA+ G+ +A+ F+ M+ +KPN +T +SVL+AC+ +E G ++
Sbjct: 239 VVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFG-RWIC 297
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
+E + ++DM + G + A+ + + + + ++V W T+L + GN
Sbjct: 298 SYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEK--DIVSWTTMLDGHAKLGN 355
Query: 273 VE 274
+
Sbjct: 356 YD 357
>gi|345505212|gb|AEN99830.1| chlororespiratory reduction 4, partial [Brassica oleracea]
Length = 590
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 121/331 (36%), Positives = 197/331 (59%), Gaps = 6/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D LF+ +P R++VTW +MI G K G + A++LF++MP R+VV++ ++ GY +
Sbjct: 253 IEDAKGLFNVMPRRDVVTWAIMIDGYGKLGLVHVAKTLFDQMPHRDVVAYNSMMSGYVQN 312
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL +F M + P E +++ V AI Q G + +H Y ++ F
Sbjct: 313 RYHMEALEVFNHMEKESHLTPDETSLVIVLSAIAQLGRLSKAIDMHLYIVEKQF-PLSGK 371
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LID Y+KCG I A+++FE I E K++ W ++I G A+HG+G+ A + ++++
Sbjct: 372 LGVALIDMYSKCGSIQHAMRVFEGI--ESKSIDHWNAMIGGLAVHGLGESAFDMLFQIER 429
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KP+ +TF+ VLNACSH GLV+EGL F+ M + ++ P ++HYGC++D+L R+G ++
Sbjct: 430 RSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIK 489
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG-GDYVLMYNI 300
A + G+P E N V+WRT L ACS H E GE V + ++ + GY YVL+ N+
Sbjct: 490 LARNLIEGMPIE-PNDVIWRTFLTACSHHKEFETGELVAKHLI-LXGGYNPSSYVLLSNM 547
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + D R+R ++ E+N K PG S +
Sbjct: 548 YASNGMWKDVRRVRTMMKEKNIEKIPGCSWI 578
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 149/295 (50%), Gaps = 28/295 (9%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDGY 58
FL ++FD +PER+ V++N MI G VK G +E A LF+ MP RN+++W +I GY
Sbjct: 156 FLGFARQVFDRMPERDSVSYNSMIDGYVKCGLVESAGELFDLMPREKRNLITWNSMIGGY 215
Query: 59 TRMNRSNG---ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF 115
+ R++G A LF M E I+ ++ ++G + + + + +R
Sbjct: 216 AQ--RADGVDVAEKLFDEM-----PEKDLISWNSMIGGYVKHGRIEDAKGLFNVMPRRDV 268
Query: 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
+ I +ID Y K G + A LF+ + +++V++ S++SG+ + EA+E
Sbjct: 269 VTWAI-----MIDGYGKLGLVHVAKTLFDQMP--HRDVVAYNSMMSGYVQNRYHMEALEV 321
Query: 176 FERMQKVV-LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG-CLIDM 233
F M+K L P+ + + VL+A + G + + + +VE + P G LIDM
Sbjct: 322 FNHMEKESHLTPDETSLVIVLSAIAQLGRLSKAIDMHLYIVE--KQFPLSGKLGVALIDM 379
Query: 234 LGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
+ G ++ A +V GI S+ ++ W ++G + HG +GE + ++ER
Sbjct: 380 YSKCGSIQHAMRVFEGIESK--SIDHWNAMIGGLAVHG---LGESAFDMLFQIER 429
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 112/239 (46%), Gaps = 22/239 (9%)
Query: 34 EYARSLFEEM------PCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP-SEIT 86
E+AR +F E + W +I ++ AL L M+ E + P + +
Sbjct: 51 EFARCVFHEHHVSSSGEVEDPFLWNVVIKSHSHGVDPRKALFLLCLML--ESSVPVDKFS 108
Query: 87 ILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI 146
+ A + G V+ +HG+ K G + + + NCLI Y KCG + A ++F+
Sbjct: 109 LSLALKACSRLGFVKEGTQVHGFLIKTGTWS-DLFLQNCLIGLYIKCGFLGFARQVFD-- 165
Query: 147 SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH-GGLVE 205
+ ++ VS+ S+I G+ G+ + A E F+ M + K N +T+ S++ + V+
Sbjct: 166 RMPERDSVSYNSMIDGYVKCGLVESAGELFDLMPRE--KRNLITWNSMIGGYAQRADGVD 223
Query: 206 EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
K FD+M E+ D+ + +I + GR+E A+ + + +P +VV W ++
Sbjct: 224 VAEKLFDEMPEK-----DLISWNSMIGGYVKHGRIEDAKGLFNVMPRR--DVVTWAIMI 275
>gi|125542569|gb|EAY88708.1| hypothetical protein OsI_10183 [Oryza sativa Indica Group]
Length = 510
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 124/330 (37%), Positives = 197/330 (59%), Gaps = 12/330 (3%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
D ++FDE+P R++++++ ++T +K +L+ AR +F++MP R+VVSWT +I Y R R
Sbjct: 179 DARRVFDEMPARDVISFSGLLTLHLKANDLDAARVVFDQMPHRDVVSWTAMISAYARARR 238
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
ALALF M +P E+T+L+V A GD+ + + Y + GF + + +
Sbjct: 239 PREALALFDAMP----VQPDEVTMLSVVSACTALGDLATGERVCQYVDSNGFG-WMVSLR 293
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM--QK 181
N L+D YAKCG + A LF+ ++V ++L SW + IS +A HG + V F RM
Sbjct: 294 NALMDMYAKCGSLTEARNLFDGMTV--RSLASWNTFISAYASHGDVESTVALFHRMLADG 351
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVE--ECEVLPDIKHYGCLIDMLGRAGR 239
+KP+ T L+VL A +H G VEEG F+ ++ +V I+HYGC++D+LGRAG+
Sbjct: 352 KSVKPDGTTLLAVLTAYAHKGFVEEGRAMFNAILSGNYGKVDLTIEHYGCMVDLLGRAGQ 411
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
LE+A K+ +P +N VVW LLGAC HG++ M ER +K+ + GG Y+L+ +
Sbjct: 412 LEEAYKMIEQMPIP-SNSVVWGALLGACRTHGDINMAERAVQKLRSLNPEEGGYYILLSD 470
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRS 329
+ A R +A +RR++++ A K G+S
Sbjct: 471 MYAASGRTTEAMEIRRIMNQAGAQKTAGQS 500
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 69/187 (36%), Gaps = 44/187 (23%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + LFD + R+L +WN I+ G++E +LF M + DG +
Sbjct: 306 LTEARNLFDGMTVRSLASWNTFISAYASHGDVESTVALFHRM----------LADGKS-- 353
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVR------NCQLIHGYGEKRGF 115
+P T+LAV A G V N L YG+
Sbjct: 354 ------------------VKPDGTTLLAVLTAYAHKGFVEEGRAMFNAILSGNYGKVD-- 393
Query: 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKEA 172
I C++D + G + A K+ E + + N V W +++ HG M + A
Sbjct: 394 --LTIEHYGCMVDLLGRAGQLEEAYKMIEQMPIP-SNSVVWGALLGACRTHGDINMAERA 450
Query: 173 VENFERM 179
V+ +
Sbjct: 451 VQKLRSL 457
>gi|242059647|ref|XP_002458969.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
gi|241930944|gb|EES04089.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
Length = 530
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 123/328 (37%), Positives = 194/328 (59%), Gaps = 5/328 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L ++FDE+P R+ +W+V+I G K G ++ AR LF++MP +N+V+ T +I+GY +
Sbjct: 196 LVSARRVFDEMPTRDTASWSVLIAGYCKGGLVQNARELFDKMPSKNLVARTAMINGYAQT 255
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ ALALFR + A EP T++ V A+ Q G + Y +++ ++
Sbjct: 256 GQPKAALALFRDLEAAG-IEPDGATMVGVISAVSQIGSTELAGWVGAYVDRKKIER-NVK 313
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V L+D +AKCG I AL F +I + + +T++ISG A HG K A+ FERMQ
Sbjct: 314 VLTALVDMHAKCGNIEQALSAFREIP--QPDAYPYTALISGLATHGHEKLALSVFERMQV 371
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KP+ +TF+ VL ACSH GLV++GL++++ MV + ++ HY C+IDMLGRAGR+E
Sbjct: 372 QAVKPDPITFVGVLTACSHTGLVDKGLEYWEAMVRDYGIVRRADHYACVIDMLGRAGRIE 431
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++ +P + LL AC + NVE+ E V K+ E+E G+Y+L+ NI
Sbjct: 432 EAFEMVQTMPMG-PHPGALGALLSACKTYENVEIAEIVANKLFELEPWNTGNYILLSNIY 490
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRS 329
AG + +AER+R ++ + K PG +
Sbjct: 491 AGKELWEEAERVRSLMRTKLPFKNPGST 518
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 117/274 (42%), Gaps = 48/274 (17%)
Query: 11 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALAL 70
++P + V++N ++ + + A SLF M R VSW ++ Y S G L
Sbjct: 143 DIPAPDAVSFNSLLCAHARNASVRPAESLFAAMRSRTQVSWNAMVVLYV----SAGDLVS 198
Query: 71 FRRMVACEYTE-PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDT 129
RR+ + E P+ T A W + LI
Sbjct: 199 ARRV----FDEMPTRDT------ASW----------------------------SVLIAG 220
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
Y K G + +A +LF+ + KNLV+ T++I+G+A G K A+ F ++ ++P+
Sbjct: 221 YCKGGLVQNARELFDKMP--SKNLVARTAMINGYAQTGQPKAALALFRDLEAAGIEPDGA 278
Query: 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
T + V++A S G E + V+ ++ ++K L+DM + G +EQA
Sbjct: 279 TMVGVISAVSQIGSTELA-GWVGAYVDRKKIERNVKVLTALVDMHAKCGNIEQALSAFRE 337
Query: 250 IPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
IP + + L+ + HG+ ++ V ++
Sbjct: 338 IPQ--PDAYPYTALISGLATHGHEKLALSVFERM 369
>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
Length = 670
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 121/330 (36%), Positives = 184/330 (55%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D F+EL +N VTWN M+T G A LF EM + V W +I Y +
Sbjct: 216 LDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMHDADSVCWNAMIAAYAQH 275
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R AL L+R M P + T + V + ++ + IH F+A ++
Sbjct: 276 GRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDA-NLL 334
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VSN L+ Y KCGC+ AL +F S++ K+ +SW +IIS +A HG +A+ ++ M
Sbjct: 335 VSNALVHMYGKCGCLDEALDVFH--SMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDL 392
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KP VTF+ +L+ACSHGGLV +GL +F +M ++ + P + H+GC+ID+LGR GRL
Sbjct: 393 QGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLA 452
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AE V +P + N V W +LLGAC HG+++ G R ++++ G YVL+ NI
Sbjct: 453 EAELVLKSMPIQ-ANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIY 511
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ D E++R+++ R K PG+S +
Sbjct: 512 AAAGRWKDVEKIRKIMAARGVKKSPGKSWI 541
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 125/287 (43%), Gaps = 35/287 (12%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVAC-EY 79
N++I K G L YAR LFE MP RNV +WT + ++ + AL FRRM E
Sbjct: 101 NLLIEMYGKCGRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGER 160
Query: 80 TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSA 139
+ +++ A + + IH Y G ++ V +I Y KCG + A
Sbjct: 161 PDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLP-NVVVGTAVISMYGKCGRLDDA 219
Query: 140 LKLFEDIS-----------------------------VERKNLVSWTSIISGFAMHGMGK 170
FE++ + + V W ++I+ +A HG GK
Sbjct: 220 RAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGK 279
Query: 171 EAVENFERMQKVV-LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC 229
+A++ + M L P + TF++V++ C+ +++G + V ++
Sbjct: 280 QALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQG-RAIHARVRATNFDANLLVSNA 338
Query: 230 LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMG 276
L+ M G+ G L++A V + ++ + + W T++ + ++HG+ +
Sbjct: 339 LVHMYGKCGCLDEALDVFHSM--KLKDEISWNTIISSYAYHGHSDQA 383
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 91/190 (47%), Gaps = 15/190 (7%)
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
++N LI+ Y KCG + A +LFE S+ +N+ +WT ++ F+ +G EA+ F RM +
Sbjct: 99 LANLLIEMYGKCGRLPYARELFE--SMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQ 156
Query: 182 VVLKPNRVTFLSVL--NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+P+RVTF +L A +++G + + +LP++ +I M G+ GR
Sbjct: 157 SGERPDRVTFSVILAAIAQMGAAAIDQG-REIHRYARISGLLPNVVVGTAVISMYGKCGR 215
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERG-YGGDYVLMY 298
L+ A + + N V W ++ G R+ LE+ R + D V
Sbjct: 216 LDDARAAFEEL--QWKNSVTWNAMMTNYKLDGR-------DREALELFREMHDADSVCWN 266
Query: 299 NILAGVWRYG 308
++A ++G
Sbjct: 267 AMIAAYAQHG 276
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 131/330 (39%), Positives = 200/330 (60%), Gaps = 9/330 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L +FD E+N+V+W MI+ + G +E AR +F++MP +NVVSW +I Y R
Sbjct: 240 LHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLRE 299
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY-GEKRGFNAFHI 120
+ AL LF +M P E T++++ A Q GD+ + IH Y +G A+ +
Sbjct: 300 GQYREALDLFNKMRNSRVV-PDEATLVSILAACSQLGDLVMGKKIHNYILSNKG--AYGV 356
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+ N LID YAKCG + +AL +F + + KNLVSW II A+HG G EA++ FE MQ
Sbjct: 357 TLYNSLIDMYAKCGPVVTALDIF--LEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQ 414
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
P+ +T +L+ACSH GLV+ GL +FD+M V +I+HY C++D+LGR G L
Sbjct: 415 ADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLL 474
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
+A ++ +P + +VVVW LLGAC HGNVE+G+++ +++LE+E GG YVL+ NI
Sbjct: 475 GEAIELIGRMPMK-PDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNI 533
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSL 330
R+ D +++R+++ +R K GR++
Sbjct: 534 YWEAQRWEDVKKIRKLMIDRGIKK--GRAI 561
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 133/249 (53%), Gaps = 7/249 (2%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G+L+YA+ +F+++P N + +I GY+ + A+ LFRRM+ C P+E T+ V
Sbjct: 36 GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMI-CSGLSPNEFTLPFV 94
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A L+HG K G + + V N LI Y CG I A KLF+DI+
Sbjct: 95 LKACGCKSAYWEAVLVHGLAIKLGIGSL-VFVQNALIAVYVVCGLIHCARKLFDDIT--D 151
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
K LVSW S+I G+A G KEA F +M++ ++P+ TF+++L+ CS ++ G ++
Sbjct: 152 KTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLG-RY 210
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
+E V DI L+DM + G L A+ + ++ NVV W +++ A + H
Sbjct: 211 VHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFD--RTQEKNVVSWTSMISAYAQH 268
Query: 271 GNVEMGERV 279
G++E+ ++
Sbjct: 269 GSIEVARQI 277
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 131/283 (46%), Gaps = 40/283 (14%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEY- 79
N +I V G + AR LF+++ + +VSW +I GY M A LFR+M E+
Sbjct: 127 NALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMR--EWG 184
Query: 80 TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSA 139
EP T + + Q+ D+ + +H E G I V N L+D YAKCG + SA
Sbjct: 185 MEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVK-IDIIVRNALVDMYAKCGNLHSA 243
Query: 140 LKLFEDISVERKNLVSWTSIISGFAMH-------------------------------GM 168
+F+ + KN+VSWTS+IS +A H G
Sbjct: 244 QAIFD--RTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQ 301
Query: 169 GKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG 228
+EA++ F +M+ + P+ T +S+L ACS G + G K + ++ + + Y
Sbjct: 302 YREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSN-KGAYGVTLYN 360
Query: 229 CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
LIDM + G + A + +P + N+V W ++GA + HG
Sbjct: 361 SLIDMYAKCGPVVTALDIFLEMPGK--NLVSWNVIIGALALHG 401
>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 649
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 190/305 (62%), Gaps = 5/305 (1%)
Query: 28 VKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTE-PSEIT 86
++G + YA ++F+EMP +NVVSW+ +I Y + + AL LFR M+ + P+ +T
Sbjct: 220 ARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVT 279
Query: 87 ILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI 146
+++V A + +LIH Y +RG ++ + V + LI YA+CG + S +F+
Sbjct: 280 MVSVLQACAAFAALEQGKLIHAYILRRGLDSI-LPVISALITMYARCGKLESGQLIFD-- 336
Query: 147 SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEE 206
+ +K++V W S+IS + +HG G++A++ FE M P+ ++F+SVL ACSH GLVEE
Sbjct: 337 RMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEE 396
Query: 207 GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
G K F+ MV+E + P ++HY C++D+LGRA RL++A K+ + E VW +LLGA
Sbjct: 397 GKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIE-PGPKVWGSLLGA 455
Query: 267 CSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFP 326
C H +VE+ ER ++++ ++E G+YVL+ +I A + + +R+++++D R K P
Sbjct: 456 CRIHCHVELAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVP 515
Query: 327 GRSLV 331
GRS +
Sbjct: 516 GRSWI 520
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 139/310 (44%), Gaps = 31/310 (10%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM-------- 74
+I + ++ AR +F++ R + W + R N L L+ RM
Sbjct: 110 LINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSD 169
Query: 75 -VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
Y + + + + + ++ L HGYG H+HV L+D YA+
Sbjct: 170 RFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGA-------HVHVMTTLMDMYARF 222
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK--PNRVTF 191
GC+ A +F+++ V KN+VSW+++I+ +A +G EA+E F M PN VT
Sbjct: 223 GCVSYASAVFDEMPV--KNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTM 280
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEEC--EVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
+SVL AC+ +E+G ++ +LP I LI M R G+LE + +
Sbjct: 281 VSVLQACAAFAALEQGKLIHAYILRRGLDSILPVI---SALITMYARCGKLESGQLIFDR 337
Query: 250 IPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM-ERGYGGDYVLMYNILAGVWRYG 308
+ + +VV+W +L+ + HG G + + EM + G+ ++ ++L G
Sbjct: 338 MHKK--DVVLWNSLISSYGLHG---YGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTG 392
Query: 309 DAERLRRVVD 318
E +++ +
Sbjct: 393 LVEEGKKLFE 402
>gi|449523934|ref|XP_004168978.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Cucumis sativus]
Length = 664
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 199/330 (60%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+K+ S LF +PE + ++WN+MI+G + G L+ A LF+ +P +++VSW +I GY +
Sbjct: 336 MKEASNLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKN 395
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
GA+ +F +M E +P T+ ++ A D+ IH K F A +
Sbjct: 396 EDYKGAMNIFLQM-QLEGKKPDRHTLSSILSACAGLVDLVLGTQIHQLVTK-AFIA-DLP 452
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
++N L+ Y++CG I A +F++++++R +++SW ++I G+A HG EA++ F+ M++
Sbjct: 453 INNSLVTMYSRCGAIVEARMVFDEMNLQR-DVISWNAMIGGYAYHGFATEALQLFDLMKQ 511
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++P+ +TF+SVLNAC+H GL+EEG + F+ MV + P ++HY L+D++GR G+LE
Sbjct: 512 CNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLE 571
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + + +P E + VW LLGAC H NVEM +++++ YVL++N+
Sbjct: 572 EAMSLINSMPCE-PDKAVWGALLGACKVHNNVEMARAAAEALMKLQPESSAPYVLLHNMY 630
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A V R+ DA +R ++++ N K G S V
Sbjct: 631 ADVGRWDDAAEMRTMMEKNNVQKDAGYSRV 660
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 127/272 (46%), Gaps = 24/272 (8%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
F++ +FD++PE + V+WN M++G K G ++ A LF EMP RNVVSW ++ GY
Sbjct: 136 FVERARNMFDQMPETDCVSWNTMLSGYAKSGTMDKAEELFNEMPERNVVSWNAMVSGYLM 195
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQ-LIHGYGEKRGFNAFH 119
A+ F+ M + ++ A+ + QN + + ++ YG G
Sbjct: 196 NGHVEKAIEFFKLM-----PKRDSASLRALVSGLIQNDKLVEAERILLQYGGNVGKGDL- 249
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFE------DISVERKNLVSWTSIISGFAMHGMGKEAV 173
+ N LI Y + G + A KLF+ D R+N++SW S+I + G A
Sbjct: 250 VDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSAR 309
Query: 174 ENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDM 233
E F++M ++ + ++ ++++ ++E F +M E PD + +I
Sbjct: 310 ELFDKM----VERDTFSWNTMISGYVQILDMKEASNLFSRMPE-----PDTLSWNMMISG 360
Query: 234 LGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
G L+ A + IP + ++V W +++
Sbjct: 361 FSEIGSLKLAHDLFKRIPEK--SLVSWNSMIS 390
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 125/300 (41%), Gaps = 71/300 (23%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + +LFD N +TWN MIT VK E+ AR LFEEMP R++VSW ++ GY
Sbjct: 73 INEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSGYI-- 130
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
G R + + E ++ W
Sbjct: 131 -SCGGKFVERARNMFDQMPETDCVS--------W-------------------------- 155
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
N ++ YAK G + A +LF ++ +N+VSW +++SG+ M+G ++A+E F+ M
Sbjct: 156 --NTMLSGYAKSGTMDKAEELFNEMP--ERNVVSWNAMVSGYLMNGHVEKAIEFFKLM-- 209
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD----------IKHYGCLI 231
P R ++ S LV GL DK+VE +L + Y LI
Sbjct: 210 ----PKR-------DSASLRALV-SGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLI 257
Query: 232 DMLGRAGRLEQAEKVASGIP------SEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
G+ G +A K+ IP NV+ W +++ G++ + K++E
Sbjct: 258 AGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVE 317
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 203/337 (60%), Gaps = 11/337 (3%)
Query: 2 LKD---GSKLFDELPERNLVTWNVMITGLV----KWGELEYARSLFEEMPCRNVVSWTGI 54
LKD G KL + E ++ V+ + LV K G+L+ AR +F+++ ++V +W+ +
Sbjct: 193 LKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSAL 252
Query: 55 IDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG 114
I GY + NRS AL LFR + P+E+TILAV A Q GD+ + +H Y R
Sbjct: 253 IFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDY-ITRT 311
Query: 115 FNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVE 174
+ ++N LID ++KCG I +A ++F+ +S K+L+SW S+++GFA+HG+G+EA+
Sbjct: 312 QKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSY--KDLISWNSMVNGFALHGLGREALA 369
Query: 175 NFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDML 234
F MQ L+P+ +TF+ VL ACSH GLV+EG K F ++ V +HYGC++D+L
Sbjct: 370 QFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLL 429
Query: 235 GRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY 294
RAG L +A + +P + + +W ++LGAC + N+E+GE R +L++E G Y
Sbjct: 430 CRAGLLAEAREFIRVMPLQ-PDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVY 488
Query: 295 VLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+L+ NI A + + +++R +++E+ K PG S V
Sbjct: 489 ILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSV 525
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 130/242 (53%), Gaps = 8/242 (3%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G+L+ AR LFE M RN V WT +I GY + + N AL L+++M ++ P E+T+ +
Sbjct: 128 GDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFS-PDEVTMATL 186
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A + D+ +H + + + + + L++ YAKCG + +A ++F+ +S
Sbjct: 187 VSACAELKDLGVGMKLHSHIREMDMKICAV-LGSALVNMYAKCGDLKTARQVFDKLS--D 243
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQ-KVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
K++ +W+++I G+ + EA++ F + ++PN VT L+V++AC+ G +E G +
Sbjct: 244 KDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETG-R 302
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
+ + + + LIDM + G ++ A+++ + + +++ W +++ +
Sbjct: 303 WVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYK--DLISWNSMVNGFAL 360
Query: 270 HG 271
HG
Sbjct: 361 HG 362
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 117/252 (46%), Gaps = 16/252 (6%)
Query: 19 TWNVMITGLVKWGELE--YARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVA 76
+ N +I ++ G L YA S+F +V++W ++ + N AL + M+
Sbjct: 12 SLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLE 71
Query: 77 CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136
P T ++ + + +++HG K ++ +++ L++ YA CG +
Sbjct: 72 RSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHS-DLYIETTLLNMYAACGDL 130
Query: 137 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLN 196
SA LFE + +N V WTS+ISG+ + EA+ +++M++ P+ VT ++++
Sbjct: 131 KSARFLFERMG--HRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVS 188
Query: 197 ACSHGGLVEEGLKFFDKMVEE----CEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
AC+ + G+K + E C VL L++M + G L+ A +V +
Sbjct: 189 ACAELKDLGVGMKLHSHIREMDMKICAVLG-----SALVNMYAKCGDLKTARQVFDKLSD 243
Query: 253 EITNVVVWRTLL 264
+ +V W L+
Sbjct: 244 K--DVYAWSALI 253
>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
Length = 886
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 123/319 (38%), Positives = 186/319 (58%), Gaps = 7/319 (2%)
Query: 17 LVTWNVMITGLVKWGELEYARSLFEEMPCR--NVVSWTGIIDGYTRMNRSNGALALFRRM 74
LV N +I K + AR++F +P R NVV+WT +I GY + SN AL LF M
Sbjct: 442 LVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEM 501
Query: 75 VACEYT-EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG-FNAFHIHVSNCLIDTYAK 132
++ Y P+ TI + A +R + IH Y + + + V+NCLID Y+K
Sbjct: 502 ISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSK 561
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
CG + +A +F+ S+ ++N VSWTS++SG+ MHG GKEA++ F++MQK P+ ++FL
Sbjct: 562 CGDVDTARNVFD--SMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFL 619
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
+L ACSH G+V++GL +FD M + V+ +HY C+ID+L R+GRL++A K +P
Sbjct: 620 VLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPM 679
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312
E + +W LL AC H NVE+ E K++ M+ G Y L+ NI A R+ D R
Sbjct: 680 E-PSAAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVAR 738
Query: 313 LRRVVDERNALKFPGRSLV 331
+R+++ + K PG S V
Sbjct: 739 IRQLMKKSGIKKRPGCSWV 757
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 78/313 (24%), Positives = 147/313 (46%), Gaps = 57/313 (18%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCR---NVVSWTGIIDGYTRMNRSNGALAL 70
E N+ N ++ + G LE A +F+E+ + +V+SW I+ + + + AL L
Sbjct: 181 ESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDL 240
Query: 71 FRRMVACEYTEPSE-----ITILAVFPAIWQNGDVRNCQLIHGYGEKRGF--NAFHIHVS 123
F M + + + I+I+ + PA + + IH Y + G +AF V
Sbjct: 241 FSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAF---VC 297
Query: 124 NCLIDTYAKCGCIFSALKLF-----EDI------------------------SVERKNL- 153
N LIDTYAKCG + A+ +F +D+ ++ ++N+
Sbjct: 298 NALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIP 357
Query: 154 ---VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
++W+++I+G+A G G+EA++ F++M +PN VT +S+L+AC+ G + +G++
Sbjct: 358 LDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMET 417
Query: 211 FDKMVEEC-----------EVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVV 259
+++C D+ + LIDM + + A + + IP NVV
Sbjct: 418 HAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVT 477
Query: 260 WRTLLGACSFHGN 272
W ++G + +G+
Sbjct: 478 WTVMIGGYAQYGD 490
>gi|449516814|ref|XP_004165441.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like isoform 1 [Cucumis sativus]
Length = 703
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 186/316 (58%), Gaps = 3/316 (0%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ +L + NVMI G K G ++ AR +F+ MP ++V SW+ +I GY + + AL LF
Sbjct: 388 KSHLTSSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSWSTMISGYAQNELPDVALDLFHG 447
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M+ + EP+EIT+++VF AI G + + H Y + + ++S +ID YAKC
Sbjct: 448 MIDSK-VEPNEITMVSVFSAIAALGKLPEGRWAHEYVCNKVI-PLNDNLSAAIIDMYAKC 505
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G I +AL +F I + + W +II G AMHG ++E F +Q+ +K N +TFL
Sbjct: 506 GSIDTALDVFRQIKDKTSTVSPWNAIICGLAMHGHANLSLEIFSNLQRRSIKLNSITFLG 565
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VL+AC H GLVE G ++F M + V P+IKHYGCL+D+LGR GRL +AE++ +P +
Sbjct: 566 VLSACCHAGLVEVGERYFWSMKTQHGVEPNIKHYGCLVDLLGRVGRLREAEEIVRTMPMK 625
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
+VV+W TLL + HG VE+GER + ++ +G VL+ N+ A + DA +
Sbjct: 626 -ADVVIWGTLLASSRTHGEVEIGERAAENLARLQPSHGPGRVLLSNLYADAGLWEDAALV 684
Query: 314 RRVVDERNALKFPGRS 329
RR + + ++ PG S
Sbjct: 685 RRAIQSQRMIRSPGYS 700
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 88/305 (28%), Positives = 147/305 (48%), Gaps = 34/305 (11%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
LKD +LF+E+P RN V+WNVM+ G VK G ++ AR LFE +P R+V SW +IDG+ +M
Sbjct: 244 LKDTKRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAIMIDGFVQM 303
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF--- 118
R AL L+ M + P+E+ I+ + A Q+ + + H K GF F
Sbjct: 304 KRLRKALLLYSAMRKSDL-HPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVCFDFI 362
Query: 119 ---------------------------HIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151
H+ SN +I + K G I A ++F+ + K
Sbjct: 363 QATIISFYAACRRIDLAYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFD--MMPEK 420
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
++ SW+++ISG+A + + A++ F M ++PN +T +SV +A + G + EG
Sbjct: 421 DVFSWSTMISGYAQNELPDVALDLFHGMIDSKVEPNEITMVSVFSAIAALGKLPEGRWAH 480
Query: 212 DKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ + + L D +IDM + G ++ A V I + + V W ++ + HG
Sbjct: 481 EYVCNKVIPLND-NLSAAIIDMYAKCGSIDTALDVFRQIKDKTSTVSPWNAIICGLAMHG 539
Query: 272 NVEMG 276
+ +
Sbjct: 540 HANLS 544
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 118/251 (47%), Gaps = 43/251 (17%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L LFD + V+ N+M++G VK +LE AR LF +MP R VS+T +I G +
Sbjct: 111 LLSSARLLFDSCSVLDSVSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQ 170
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+ A+ +F+ M + P+E+T+ +V A G + NC+++H K F +
Sbjct: 171 NDCWGEAIEVFKDMRSAG-VAPNEVTMASVMSACSHIGGIWNCRMLHALVIKLHFFGL-V 228
Query: 121 HVSNCLIDTYAKCGCIFSALK----LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
+S L+ Y C+FS+LK LF ++ V +N VSW ++ G+ G+ +A E F
Sbjct: 229 LISTNLLHMY----CVFSSLKDTKRLFNEMPV--RNTVSWNVMLKGYVKSGLVDQARELF 282
Query: 177 ER-------------------------------MQKVVLKPNRVTFLSVLNACSHGGLVE 205
ER M+K L PN V + +L+AC +E
Sbjct: 283 ERIPERDVFSWAIMIDGFVQMKRLRKALLLYSAMRKSDLHPNEVLIVDLLSACGQSVSIE 342
Query: 206 EGLKFFDKMVE 216
EG +F +V+
Sbjct: 343 EGRQFHSLIVK 353
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 33/231 (14%)
Query: 84 EITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLF 143
E+++++ + + + Q IH K GFN+ + + N LI+ Y KCG + SA LF
Sbjct: 61 ELSVVSALKYCASSSAISSGQQIHAIVLKYGFNS-NTFILNSLINMYVKCGLLSSARLLF 119
Query: 144 EDISV-----------------------------ERKNLVSWTSIISGFAMHGMGKEAVE 174
+ SV + VS+T++I G A + EA+E
Sbjct: 120 DSCSVLDSVSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIE 179
Query: 175 NFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDML 234
F+ M+ + PN VT SV++ACSH G + + +V + + L+ M
Sbjct: 180 VFKDMRSAGVAPNEVTMASVMSACSHIGGI-WNCRMLHALVIKLHFFGLVLISTNLLHMY 238
Query: 235 GRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
L+ +++ + +P + N V W +L G V+ + +I E
Sbjct: 239 CVFSSLKDTKRLFNEMP--VRNTVSWNVMLKGYVKSGLVDQARELFERIPE 287
>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 633
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 116/329 (35%), Positives = 197/329 (59%), Gaps = 7/329 (2%)
Query: 8 LFDEL-PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
LFD + P+ ++V+ M++ K G+L+ AR LF+ +P +++V W ++DGYT+ R +
Sbjct: 178 LFDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSE 237
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY---GEKRGFNAFHIHVS 123
AL LFR+M+ EP E++++ A+ Q G + + +H + G +R + V
Sbjct: 238 ALRLFRQMLRSG-VEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVG 296
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
L+D Y KCG + A+ +F D+ +++V+W ++I+G+AMHG +EA+E F +++
Sbjct: 297 TALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQ 356
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
L P +TF+ VLNACSH GLV+EG F M EE ++P ++HYGC++D+LGRAGR+E+
Sbjct: 357 GLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEE 416
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302
A + + ++ + +W +LLGAC H N+ +G+RV ++ G YVL+ N+ A
Sbjct: 417 AFDLVQSMKAK-PDAAMWASLLGACRLHKNLALGQRVADYLVGNGLANSGTYVLLSNMYA 475
Query: 303 GVWRYGDAERLRRVVDERNALKFPGRSLV 331
++ + R+R ++ K PG S V
Sbjct: 476 AAGKWREVGRVRSMMRASGVQKEPGCSAV 504
>gi|357511423|ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355501015|gb|AES82218.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 607
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 129/327 (39%), Positives = 189/327 (57%), Gaps = 11/327 (3%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
D FD++P+RN+++W ++ G VK ++ ARS+F++M RNVVSWT +I GY + R
Sbjct: 190 DAQTAFDQMPQRNIISWTTLVNGYVKNKQVNKARSVFDDMSERNVVSWTAMISGYVQNKR 249
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
AL LF M E T P+ T +V A + + +H K G I ++
Sbjct: 250 FVDALKLFVLMFKTE-TRPNHFTFSSVLDACAGSSSLIMGLQLHPCIIKSGIANDVIWLT 308
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
+ L+D YAKCG + +A +FE S+ KNLVSW +II G+A HG+ A+E F+RM KVV
Sbjct: 309 S-LVDMYAKCGDMDAAFGVFE--SIRDKNLVSWNAIIGGYASHGLATRALEEFDRM-KVV 364
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
P+ VTF++VL+AC H GLVEEG K F M+ + + +++HY C++D+ GRAGR ++A
Sbjct: 365 GTPDEVTFVNVLSACVHAGLVEEGEKHFTDMLTKYGIQAEMEHYSCMVDLYGRAGRFDEA 424
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA- 302
E + +P E +VV+W LL AC H N+E+GE +I +E + Y ++ I
Sbjct: 425 ENLIKNMPFE-PDVVLWGALLAACGLHSNLELGEYAAERIRRLESSHPVSYSVLSKIQGE 483
Query: 303 -GVWRYGDAERLRRVVDERNALK-FPG 327
GVW LR + ER K PG
Sbjct: 484 KGVW--SSVNELRDTMKERGIKKQTPG 508
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 89/369 (24%), Positives = 153/369 (41%), Gaps = 65/369 (17%)
Query: 2 LKDGSKLFDE-LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
+K KL DE L N+V+WN+++T ++ ++ LF++MP ++ VSW ++ G+ R
Sbjct: 24 VKQAHKLLDENLLSCNIVSWNMVMTAYLQHNQIGPVHDLFDKMPLKDAVSWNIMLSGFQR 83
Query: 61 MNRSNGALALFRRM-----VACEYTEPS----------EITILAVFPAIWQNGDVRN--- 102
S G F +M V +YT + ++ + V + G N
Sbjct: 84 TRNSEGLYRCFLQMGRAGVVPNDYTISTLLRAVISTELDVLVRQVHALAFHLGHYLNVFV 143
Query: 103 -CQLIHGY-GEK------RGFNAFH---IHVSNCLIDTYAKCGCIFSALKLFEDI----- 146
LI Y G K R FN + N L+ +Y + G A F+ +
Sbjct: 144 GSSLIRAYAGLKEEEALGRAFNDISMKDVTSWNALVSSYMELGKFVDAQTAFDQMPQRNI 203
Query: 147 ------------------------SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
+ +N+VSWT++ISG+ + +A++ F M K
Sbjct: 204 ISWTTLVNGYVKNKQVNKARSVFDDMSERNVVSWTAMISGYVQNKRFVDALKLFVLMFKT 263
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
+PN TF SVL+AC+ + GL+ +++ + D+ L+DM + G ++
Sbjct: 264 ETRPNHFTFSSVLDACAGSSSLIMGLQLHPCIIKS-GIANDVIWLTSLVDMYAKCGDMDA 322
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302
A V I + N+V W ++G + HG + R + M+ D V N+L+
Sbjct: 323 AFGVFESIRDK--NLVSWNAIIGGYASHG---LATRALEEFDRMKVVGTPDEVTFVNVLS 377
Query: 303 GVWRYGDAE 311
G E
Sbjct: 378 ACVHAGLVE 386
>gi|449454362|ref|XP_004144924.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Cucumis sativus]
Length = 664
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 199/330 (60%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+K+ S LF +PE + ++WN+MI+G + G L+ A LF+ +P +++VSW +I GY +
Sbjct: 336 MKEASNLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKN 395
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
GA+ +F +M E +P T+ ++ A D+ IH K F A +
Sbjct: 396 EDYKGAMNIFLQM-QLEGKKPDRHTLSSILSACAGLVDLVLGTQIHQLVTK-AFIA-DLP 452
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
++N L+ Y++CG I A +F++++++R +++SW ++I G+A HG EA++ F+ M++
Sbjct: 453 INNSLVTMYSRCGAIVEARMVFDEMNLQR-DVISWNAMIGGYAYHGFATEALQLFDLMKQ 511
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++P+ +TF+SVLNAC+H GL+EEG + F+ MV + P ++HY L+D++GR G+LE
Sbjct: 512 CNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLE 571
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + + +P E + VW LLGAC H NVEM +++++ YVL++N+
Sbjct: 572 EAMSLINSMPCE-PDKAVWGALLGACKVHNNVEMARAAAEALMKLQPESSAPYVLLHNMY 630
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A V R+ DA +R ++++ N K G S V
Sbjct: 631 ADVGRWDDAAEMRTMMEKNNVQKDAGYSRV 660
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 127/272 (46%), Gaps = 24/272 (8%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
F++ +FD++PE + V+WN M++G K G ++ A LF EMP RNVVSW ++ GY
Sbjct: 136 FVERARNMFDQMPETDCVSWNTMLSGYAKSGMMDKAEELFNEMPERNVVSWNAMVSGYLM 195
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQ-LIHGYGEKRGFNAFH 119
A+ F+ M + ++ A+ + QN + + ++ YG G
Sbjct: 196 NGHVEKAIEFFKLM-----PKRDSASLRALISGLIQNDKLVEAERILLQYGGNVGKGDL- 249
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFE------DISVERKNLVSWTSIISGFAMHGMGKEAV 173
+ N LI Y + G + A KLF+ D R+N++SW S+I + G A
Sbjct: 250 VDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSAR 309
Query: 174 ENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDM 233
E F++M ++ + ++ ++++ ++E F +M E PD + +I
Sbjct: 310 ELFDKM----VERDTFSWNTMISGYVQILDMKEASNLFSRMPE-----PDTLSWNMMISG 360
Query: 234 LGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
G L+ A + IP + ++V W +++
Sbjct: 361 FSEIGSLKLAHDLFKRIPEK--SLVSWNSMIS 390
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 125/300 (41%), Gaps = 71/300 (23%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + +LFD N +TWN MIT VK E+ AR LFEEMP R++VSW ++ GY
Sbjct: 73 INEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSGYI-- 130
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
G R + + E ++ W
Sbjct: 131 -SCGGKFVERARNMFDQMPETDCVS--------W-------------------------- 155
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
N ++ YAK G + A +LF ++ +N+VSW +++SG+ M+G ++A+E F+ M
Sbjct: 156 --NTMLSGYAKSGMMDKAEELFNEMP--ERNVVSWNAMVSGYLMNGHVEKAIEFFKLM-- 209
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD----------IKHYGCLI 231
P R ++ S L+ GL DK+VE +L + Y LI
Sbjct: 210 ----PKR-------DSASLRALI-SGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLI 257
Query: 232 DMLGRAGRLEQAEKVASGIP------SEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
G+ G +A K+ IP NV+ W +++ G++ + K++E
Sbjct: 258 AGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVE 317
>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 781
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 127/330 (38%), Positives = 193/330 (58%), Gaps = 11/330 (3%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
+LFD +P RN+ TWN MITG + G++ A++LF++MP R+ VSW +I GY++ S
Sbjct: 331 AKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHS 390
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQL---IHGYGEKRGFNAFHIH 121
AL LF +M E + + A+ DV +L +HG K G+
Sbjct: 391 FEALRLFVQM----EREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYET-GCF 445
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N L+ Y KCG I A LF++++ K++VSW ++I+G++ HG G+ A+ FE M++
Sbjct: 446 VGNALLLMYCKCGSIEEANDLFKEMA--GKDIVSWNTMIAGYSRHGFGEVALRFFESMKR 503
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
LKP+ T ++VL+ACSH GLV++G ++F M ++ V+P+ +HY C++D+LGRAG LE
Sbjct: 504 EGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLE 563
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A + +P E + +W TLLGA HGN E+ E KI ME G YVL+ N+
Sbjct: 564 DAHNLMKNMPFE-PDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLY 622
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+GD +LR + ++ K PG S +
Sbjct: 623 ASSGRWGDVGKLRVRMRDKGVKKVPGYSWI 652
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 147/290 (50%), Gaps = 32/290 (11%)
Query: 1 FLKDGS-----KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGII 55
+L++G KLFDE+PER+LV+WNVMI G V+ L AR LFE MP R+V SW ++
Sbjct: 105 YLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTML 164
Query: 56 DGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF 115
GY + + A ++F RM E ++++ A+ A QN + ++ E
Sbjct: 165 SGYAQNGCVDDARSVFDRM-----PEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWAL 219
Query: 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
++ NCL+ + K I A + F+ ++V +++VSW +II+G+A G EA +
Sbjct: 220 VSW-----NCLLGGFVKKKKIVEARQFFDSMNV--RDVVSWNTIITGYAQSGKIDEARQL 272
Query: 176 FER--MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDM 233
F+ +Q V T+ ++++ +VEE + FDKM E EV + ++
Sbjct: 273 FDESPVQDV------FTWTAMVSGYIQNRMVEEARELFDKMPERNEV-----SWNAMLAG 321
Query: 234 LGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
+ R+E A+++ +P NV W T++ + G + + + K+
Sbjct: 322 YVQGERMEMAKELFDVMPCR--NVSTWNTMITGYAQCGKISEAKNLFDKM 369
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 153/318 (48%), Gaps = 29/318 (9%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ + FD + R++V+WN +ITG + G+++ AR LF+E P ++V +WT ++ GY +
Sbjct: 237 EARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRM 296
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
A LF +M E +E++ A+ Q + + + R + +
Sbjct: 297 VEEARELFDKM-----PERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTW----- 346
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N +I YA+CG I A LF+ + +++ VSW ++I+G++ G EA+ F +M++
Sbjct: 347 NTMITGYAQCGKISEAKNLFDKMP--KRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREG 404
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC-----LIDMLGRAG 238
+ NR +F S L+ C+ +E G + ++V+ GC L+ M + G
Sbjct: 405 GRLNRSSFSSALSTCADVVALELGKQLHGRLVKGG------YETGCFVGNALLLMYCKCG 458
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER-GYGGDYVLM 297
+E+A + + + ++V W T++ S HG GE R M+R G D M
Sbjct: 459 SIEEANDLFKEMAGK--DIVSWNTMIAGYSRHG---FGEVALRFFESMKREGLKPDDATM 513
Query: 298 YNILAGVWRYGDAERLRR 315
+L+ G ++ R+
Sbjct: 514 VAVLSACSHTGLVDKGRQ 531
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 123/273 (45%), Gaps = 45/273 (16%)
Query: 3 KDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
K +K + + ++ WNV I+ ++ G A +F+ MP + VS+ G+I GY R
Sbjct: 50 KSQTKPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLR-- 107
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV 122
NG L R++ + E E +++ I G VRN L G+ R F I
Sbjct: 108 --NGEFELARKL----FDEMPERDLVSWNVMI--KGYVRNRNL----GKAREL--FEIMP 153
Query: 123 S------NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
N ++ YA+ GC+ A +F+ + KN VSW +++S + V+N
Sbjct: 154 ERDVCSWNTMLSGYAQNGCVDDARSVFDRMP--EKNDVSWNALLSAY---------VQNS 202
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVE-----EGLKFFDKMVEECEVLPDIKHYGCLI 231
+ + +L +R + V C GG V+ E +FFD M + D+ + +I
Sbjct: 203 KMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSM-----NVRDVVSWNTII 257
Query: 232 DMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
++G++++A ++ P + +V W ++
Sbjct: 258 TGYAQSGKIDEARQLFDESP--VQDVFTWTAMV 288
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/324 (36%), Positives = 191/324 (58%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+F + ++V+W MI G + G+ + AR LF+ MP RN+V+W+ +I GY R N A
Sbjct: 174 VFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKA 233
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
+ F + A E +E ++ V + G + + H Y + + ++ + ++
Sbjct: 234 VETFEALQA-EGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKL-SLNLILGTAVV 291
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D YA+CG + A+ +FE + K+++ WT++I+G AMHG ++A+ F M K P
Sbjct: 292 DMYARCGNVEKAVMVFEQLP--EKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPR 349
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TF +VL ACSH G+VE GL+ F+ M + V P ++HYGC++D+LGRAG+L +AEK
Sbjct: 350 DITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFV 409
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P + N +WR LLGAC H NVE+GERV + +LEM+ Y G YVL+ NI A ++
Sbjct: 410 LKMPVK-PNAPIWRALLGACRIHKNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKW 468
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
D +R+++ ++ K PG SL+
Sbjct: 469 KDVTVMRQMMKDKGVRKPPGYSLI 492
>gi|449465220|ref|XP_004150326.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Cucumis sativus]
Length = 874
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 186/316 (58%), Gaps = 3/316 (0%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ +L + NVMI G K G ++ AR +F+ MP ++V SW+ +I GY + + AL LF
Sbjct: 559 KSHLTSSNVMIVGFTKNGMIDQARQIFDMMPEKDVFSWSTMISGYAQNELPDVALDLFHG 618
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M+ + EP+EIT+++VF AI G + + H Y + + ++S +ID YAKC
Sbjct: 619 MIDSK-VEPNEITMVSVFSAIAALGKLPEGRWAHEYVCNKVI-PLNDNLSAAIIDMYAKC 676
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G I +AL +F I + + W +II G AMHG ++E F +Q+ +K N +TFL
Sbjct: 677 GSIDTALDVFRQIKDKTSTVSPWNAIICGLAMHGHANLSLEIFSNLQRRSIKLNSITFLG 736
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VL+AC H GLVE G ++F M + V P+IKHYGCL+D+LGR GRL +AE++ +P +
Sbjct: 737 VLSACCHAGLVEVGERYFWSMKTQHGVEPNIKHYGCLVDLLGRVGRLREAEEIVRTMPMK 796
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
+VV+W TLL + HG VE+GER + ++ +G VL+ N+ A + DA +
Sbjct: 797 -ADVVIWGTLLASSRTHGEVEIGERAAENLARLQPSHGPGRVLLSNLYADAGLWEDAALV 855
Query: 314 RRVVDERNALKFPGRS 329
RR + + ++ PG S
Sbjct: 856 RRAIQSQRMIRSPGYS 871
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/305 (28%), Positives = 147/305 (48%), Gaps = 34/305 (11%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
LKD +LF+E+P RN V+WNVM+ G VK G ++ AR LFE +P R+V SW +IDG+ +M
Sbjct: 415 LKDTKRLFNEMPVRNTVSWNVMLKGYVKSGLVDQARELFERIPERDVFSWAIMIDGFVQM 474
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF--- 118
R AL L+ M + P+E+ I+ + A Q+ + + H K GF F
Sbjct: 475 KRLRKALLLYSAMRKSDL-HPNEVLIVDLLSACGQSVSIEEGRQFHSLIVKNGFVCFDFI 533
Query: 119 ---------------------------HIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151
H+ SN +I + K G I A ++F+ + K
Sbjct: 534 QATIISFYAACRRIDLAYLQYQMSDKSHLTSSNVMIVGFTKNGMIDQARQIFD--MMPEK 591
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
++ SW+++ISG+A + + A++ F M ++PN +T +SV +A + G + EG
Sbjct: 592 DVFSWSTMISGYAQNELPDVALDLFHGMIDSKVEPNEITMVSVFSAIAALGKLPEGRWAH 651
Query: 212 DKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ + + L D +IDM + G ++ A V I + + V W ++ + HG
Sbjct: 652 EYVCNKVIPLND-NLSAAIIDMYAKCGSIDTALDVFRQIKDKTSTVSPWNAIICGLAMHG 710
Query: 272 NVEMG 276
+ +
Sbjct: 711 HANLS 715
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 118/251 (47%), Gaps = 43/251 (17%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L LFD + V+ N+M++G VK +LE AR LF +MP R VS+T +I G +
Sbjct: 282 LLSSARLLFDSCSVLDSVSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQ 341
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+ A+ +F+ M + P+E+T+ +V A G + NC+++H K F +
Sbjct: 342 NDCWGEAIEVFKDMRSAG-VAPNEVTMASVMSACSHIGGIWNCRMLHALVIKLHFFGL-V 399
Query: 121 HVSNCLIDTYAKCGCIFSALK----LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
+S L+ Y C+FS+LK LF ++ V +N VSW ++ G+ G+ +A E F
Sbjct: 400 LISTNLLHMY----CVFSSLKDTKRLFNEMPV--RNTVSWNVMLKGYVKSGLVDQARELF 453
Query: 177 ER-------------------------------MQKVVLKPNRVTFLSVLNACSHGGLVE 205
ER M+K L PN V + +L+AC +E
Sbjct: 454 ERIPERDVFSWAIMIDGFVQMKRLRKALLLYSAMRKSDLHPNEVLIVDLLSACGQSVSIE 513
Query: 206 EGLKFFDKMVE 216
EG +F +V+
Sbjct: 514 EGRQFHSLIVK 524
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 99/233 (42%), Gaps = 33/233 (14%)
Query: 84 EITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLF 143
E+++++ + + + Q IH K GFN+ + + N LI+ Y KCG + SA LF
Sbjct: 232 ELSVVSALKYCASSSAISSGQQIHAIVLKYGFNS-NTFILNSLINMYVKCGLLSSARLLF 290
Query: 144 EDISV-----------------------------ERKNLVSWTSIISGFAMHGMGKEAVE 174
+ SV + VS+T++I G A + EA+E
Sbjct: 291 DSCSVLDSVSCNIMMSGYVKLRQLENARQLFAKMPERGCVSYTTMILGLAQNDCWGEAIE 350
Query: 175 NFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDML 234
F+ M+ + PN VT SV++ACSH G + + +V + + L+ M
Sbjct: 351 VFKDMRSAGVAPNEVTMASVMSACSHIGGIWN-CRMLHALVIKLHFFGLVLISTNLLHMY 409
Query: 235 GRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME 287
L+ +++ + +P + N V W +L G V+ + +I E +
Sbjct: 410 CVFSSLKDTKRLFNEMP--VRNTVSWNVMLKGYVKSGLVDQARELFERIPERD 460
>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 491
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/325 (36%), Positives = 190/325 (58%), Gaps = 4/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LF +PERN+V+W+ M++G K G+LE AR +F++MP +N+V+WT ++ + +
Sbjct: 123 ELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDE 182
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A LF +M E ++++ A ++G + + IH Y KR HV N L
Sbjct: 183 AGKLFAQMKEAS-VELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGR-STHVCNAL 240
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID + KCGC+ A +F+ +V+ K+ VSW SII GFAMHG G +A+E F +M++ P
Sbjct: 241 IDMFCKCGCVNRADYVFDTETVQ-KDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNP 299
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ VT ++VL+AC+H G V+EG + F M + ++P I+HYGC+ID+LGR G +++A +
Sbjct: 300 DAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDL 359
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E N V+W +LL AC H NVE E ++ +++ G+Y ++ NI A +
Sbjct: 360 IKSMPWE-PNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQ 418
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ D + R + + K G S V
Sbjct: 419 WSDMAKARMQMKGTGSQKTAGSSWV 443
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 147/315 (46%), Gaps = 49/315 (15%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
D K+FDE+PER++V+WN + +V+ GEL R LF+EMP ++ VSW I+DGYT+
Sbjct: 56 FSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKA 115
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
A LF+RM E +++ W
Sbjct: 116 GEVEAAFELFQRM--------PERNVVS-----W-------------------------- 136
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ ++ Y K G + A +F+ + KNLV+WT ++S A G+ EA + F +M++
Sbjct: 137 --STMVSGYCKKGDLEMARVIFDKMP--SKNLVTWTIMVSACAQKGLVDEAGKLFAQMKE 192
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++ + +S+L AC+ G + G K + V + + LIDM + G +
Sbjct: 193 ASVELDVAAVVSILAACAESGSLSLG-KRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVN 251
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM-ERGYGGDYVLMYNI 300
+A+ V + + V W +++G + HG+ G++ +M ++G+ D V M N+
Sbjct: 252 RADYVFD-TETVQKDSVSWNSIIGGFAMHGH---GDKALELFAQMKQQGFNPDAVTMINV 307
Query: 301 LAGVWRYGDAERLRR 315
L+ G + RR
Sbjct: 308 LSACTHMGFVDEGRR 322
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 95/203 (46%), Gaps = 18/203 (8%)
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LID Y+K G A K+F+++ +++VSW + ++ G + F+ M
Sbjct: 42 VGNALIDAYSKNGGFSDARKVFDEMP--ERDVVSWNTAMAAMVREGELAGVRKLFDEMP- 98
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ + V++ ++L+ + G VE + F +M E ++ + ++ + G LE
Sbjct: 99 ---EKDTVSWNTILDGYTKAGEVEAAFELFQRMPER-----NVVSWSTMVSGYCKKGDLE 150
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A + +PS+ N+V W ++ AC+ G V+ ++ ++ E D + +IL
Sbjct: 151 MARVIFDKMPSK--NLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVEL--DVAAVVSIL 206
Query: 302 AGVWRYGD---AERLRRVVDERN 321
A G +R+ R V +RN
Sbjct: 207 AACAESGSLSLGKRIHRYVRKRN 229
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 202/337 (59%), Gaps = 11/337 (3%)
Query: 2 LKD---GSKLFDELPERNLVTWNVMITGLV----KWGELEYARSLFEEMPCRNVVSWTGI 54
LKD G KL + E ++ V+ + LV K G+L+ AR +F+++ ++V +W+ +
Sbjct: 193 LKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSAL 252
Query: 55 IDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG 114
I GY + NRS AL LFR + P+E+TILAV A Q GD+ + +H Y R
Sbjct: 253 IFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDY-ITRT 311
Query: 115 FNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVE 174
+ ++N LID ++KCG I +A ++F+ +S K+L+SW S+++G A+HG+G+EA+
Sbjct: 312 QKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSY--KDLISWNSMVNGLALHGLGREALA 369
Query: 175 NFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDML 234
F MQ L+P+ +TF+ VL ACSH GLV+EG K F ++ V +HYGC++D+L
Sbjct: 370 QFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLL 429
Query: 235 GRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY 294
RAG L +A + +P + + +W ++LGAC + N+E+GE R +LE+E G Y
Sbjct: 430 CRAGLLAEAREFIRVMPLQ-PDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVY 488
Query: 295 VLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+L+ NI A + + +++R +++E+ K PG S V
Sbjct: 489 ILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSV 525
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 130/242 (53%), Gaps = 8/242 (3%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G+L+ AR LFE M RN V WT +I GY + + N AL L+++M ++ P E+T+ +
Sbjct: 128 GDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFS-PDEVTMATL 186
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A + D+ +H + + + + + L++ YAKCG + +A ++F+ +S
Sbjct: 187 VSACAELKDLGVGMKLHSHIREMDMKICAV-LGSALVNMYAKCGDLKTARQVFDQLS--D 243
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQ-KVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
K++ +W+++I G+ + EA++ F + ++PN VT L+V++AC+ G +E G +
Sbjct: 244 KDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETG-R 302
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
+ + + + LIDM + G ++ A+++ + + +++ W +++ +
Sbjct: 303 WVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYK--DLISWNSMVNGLAL 360
Query: 270 HG 271
HG
Sbjct: 361 HG 362
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 117/252 (46%), Gaps = 16/252 (6%)
Query: 19 TWNVMITGLVKWGELE--YARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVA 76
+ N +I ++ G L YA S+F +V++W ++ + N AL + M+
Sbjct: 12 SLNKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLE 71
Query: 77 CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136
P T ++ + + +++HG K ++ +++ L++ YA CG +
Sbjct: 72 RSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHS-DLYIETTLLNMYAACGDL 130
Query: 137 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLN 196
SA LFE + +N V WTS+ISG+ + EA+ +++M++ P+ VT ++++
Sbjct: 131 KSARFLFERMG--HRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVS 188
Query: 197 ACSHGGLVEEGLKFFDKMVEE----CEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
AC+ + G+K + E C VL L++M + G L+ A +V +
Sbjct: 189 ACAELKDLGVGMKLHSHIREMDMKICAVLG-----SALVNMYAKCGDLKTARQVFDQLSD 243
Query: 253 EITNVVVWRTLL 264
+ +V W L+
Sbjct: 244 K--DVYAWSALI 253
>gi|147810325|emb|CAN65024.1| hypothetical protein VITISV_026273 [Vitis vinifera]
Length = 805
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 125/328 (38%), Positives = 190/328 (57%), Gaps = 10/328 (3%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFD +P R++V W MI G K G++E+AR LFE+MP RN +SW+ ++ Y+R+
Sbjct: 443 LFDRIPNRDVVLWTAMIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEV 502
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LFRRM T P+E +++V A G + +H Y ++ F++ I ++ L+
Sbjct: 503 LCLFRRMQEAG-TMPNESVLVSVLTACAHLGALAQGLWVHSYAKQCNFDSNPI-LATALV 560
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y+KCGC+ SAL F+ I K+ +W ++ISG AM+G +++E F +M +P
Sbjct: 561 DMYSKCGCVESALSTFQGIP--NKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPT 618
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV- 246
TF++VL AC+H LV EGLK F++M V P +HY CL+D++ RAG L +AEK
Sbjct: 619 ETTFVAVLTACTHARLVREGLKLFEQMSSNYGVEPQXEHYACLVDLMARAGMLAEAEKFI 678
Query: 247 ---ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
G+ N VW LGAC +GN+E+G RV +K+ +M G +VL YN+
Sbjct: 679 EEKMGGLGRGDAN--VWGAXLGACRTYGNIEVGNRVWKKLADMGVADCGTHVLSYNLYRE 736
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
+A+R+RR++ E K PG S++
Sbjct: 737 AGWDMEAKRVRRLISEXGMKKKPGCSII 764
>gi|226531155|ref|NP_001148193.1| methyltransferase small domain [Zea mays]
gi|195616632|gb|ACG30146.1| methyltransferase small domain [Zea mays]
Length = 656
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 109/316 (34%), Positives = 188/316 (59%), Gaps = 3/316 (0%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ + +WN ++ L++ G + AR LF++MP R+ VSW+ +I GY + RS+ AL LF
Sbjct: 340 KSHTASWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLFYS 399
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M+ EP+E+T+ + AI +G + + IH Y R ++S+ LID YAKC
Sbjct: 400 MLNTS-IEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQ-LTDNLSSGLIDMYAKC 457
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G I A++ F ++ + ++ W ++I A+HG +++ F ++Q+ +KPN +TF+
Sbjct: 458 GSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKPNSITFIG 517
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VL+AC H G V +G +F+ M E + P IKHYGC++D+LGRAG LE+AE++ S +P +
Sbjct: 518 VLSACCHAGTVTKGKYYFESMTREYGIQPTIKHYGCMVDLLGRAGYLEEAEQLVSMMPMK 577
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
+VV+W ++L A GNV +GER ++ ++++ +G + + NI A + + +
Sbjct: 578 -PDVVIWGSILSASRAQGNVALGERAAEELAKLDQTHGASKIALSNIYADAGHWTNVSVV 636
Query: 314 RRVVDERNALKFPGRS 329
R+ + + N + GRS
Sbjct: 637 RKELQDANLERLTGRS 652
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 134/298 (44%), Gaps = 33/298 (11%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFD + RN VTWNVM+ G VK ++ A +F +P R+ VSW +IDGY + + A
Sbjct: 201 LFDGMTHRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPERDEVSWLTLIDGYICADLISDA 260
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF--------- 118
+ + +MV E+ ++ + A + V Q +H K GF+A
Sbjct: 261 MKAYVQMVGEVGANDYEVLLVDLMKACARYSAVTEGQQLHTVILKNGFDALAFVQATLVH 320
Query: 119 ---------------------HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 157
H N L+ + G I A +LF+D+ ++ VSW+
Sbjct: 321 FYGCCGLIGLAQMTFRLSDKSHTASWNALLAALLRNGLIREARELFDDM--PERDTVSWS 378
Query: 158 SIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE 217
++ISG+ G A++ F M ++PN VT S L+A + G +++G D ++
Sbjct: 379 TMISGYVQTGRSDMALKLFYSMLNTSIEPNEVTLASALSAIADSGTLDQGKWIHDYIMNR 438
Query: 218 CEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEM 275
L D G LIDM + G + A + + + + ++V W ++ + + HG M
Sbjct: 439 PVQLTDNLSSG-LIDMYAKCGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHM 495
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 113/220 (51%), Gaps = 12/220 (5%)
Query: 2 LKDGSKLFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDG 57
L +LFDE P R+ N ++ L + G L+ A+ L EEMP R+ VS+T ++
Sbjct: 59 LASALQLFDETPPPLRDATARNSILAALTRAGHLDRAQGLLEEMPRIHRDAVSYTTLVTA 118
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
+ R + A+A+FR M++ E P+E T+ A + G +IHG+ +R +
Sbjct: 119 FARAGHAARAVAVFRSMLS-ENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRALDG 177
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
F I +N L+ YA + SA LF+ ++ +N V+W +++G+ M A E F
Sbjct: 178 FVIVATN-LVHAYAGVLELCSARALFDGMT--HRNTVTWNVMLNGYVKAKMIDMAAEVFW 234
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE 217
R+ + + V++L++++ L+ + +K + +MV E
Sbjct: 235 RIP----ERDEVSWLTLIDGYICADLISDAMKAYVQMVGE 270
>gi|326489701|dbj|BAK01831.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 484
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 194/325 (59%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LF + R+LVT+N MITGL++ G + AR +F+ MP + VSWT +IDG + R +
Sbjct: 127 QLFGSMTVRSLVTYNTMITGLMRNGLVAAAREVFDGMPEPDKVSWTALIDGCVKNGRHDE 186
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ F M+ + EP +T++A A + G + +H + +I ++N L
Sbjct: 187 AIDCFHAML-LDGVEPDYVTLVAAISACAEVGALGLGMWVHRLVTRERLEG-NIRIANSL 244
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YA+CG + A ++F+ S+ + +VSW S+I GFA +G +A+E+FE M++ +P
Sbjct: 245 IDMYARCGQVEFARQVFD--SMRNRTVVSWNSMIVGFAANGRCTDAIEHFEAMRRKGFRP 302
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ VTF VL ACSH GL +EGL+++ M E + ++HYGC++D+LGRAGRL +A V
Sbjct: 303 DAVTFTGVLTACSHAGLTDEGLRYYKAMRAEHGITARMEHYGCVVDLLGRAGRLGEAMSV 362
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ +P N VV LL C HG+V+M E++ + +LE + G +YVL+ NI A +
Sbjct: 363 VATMPMR-PNEVVLGALLAGCRMHGDVDMAEQLMQHLLEQDPGGDSNYVLLSNIYAATGK 421
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ A ++R ++ R K PGRS V
Sbjct: 422 WDGAGKVRGLMKARGVKKRPGRSAV 446
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 115/298 (38%), Gaps = 45/298 (15%)
Query: 47 NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTE-PSEITILAVFPAIWQNGDVRNCQL 105
+VVSWT I R A M++ P+++T+L V A +
Sbjct: 30 DVVSWTAAIARPAREGDLPATAAALSAMLSSPAAPAPNDVTLLTVLSACAGAPSSPLARP 89
Query: 106 IHGYGEKRGFNAF--HIHVSNCLIDTYAKCGCIFSALKLFEDISV--------------- 148
+ F H+ + CL Y AL+LF ++V
Sbjct: 90 LALSLHALAAKLFPSHLLLCTCLARFYLASRLPHLALQLFGSMTVRSLVTYNTMITGLMR 149
Query: 149 --------------ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
+ VSWT++I G +G EA++ F M ++P+ VT ++
Sbjct: 150 NGLVAAAREVFDGMPEPDKVSWTALIDGCVKNGRHDEAIDCFHAMLLDGVEPDYVTLVAA 209
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
++AC+ G + G+ + ++V + +I+ LIDM R G++E A +V + +
Sbjct: 210 ISACAEVGALGLGM-WVHRLVTRERLEGNIRIANSLIDMYARCGQVEFARQVFDSMRNR- 267
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEME----RGYGGDYVLMYNILAGVWRYG 308
VV W +++ + +G R T I E +G+ D V +L G
Sbjct: 268 -TVVSWNSMIVGFAANG------RCTDAIEHFEAMRRKGFRPDAVTFTGVLTACSHAG 318
>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g44880-like [Glycine max]
Length = 599
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 118/318 (37%), Positives = 196/318 (61%), Gaps = 6/318 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LF+E+ ERN+V+W M++G G++E A+ +F+ MP +NV +W +I GY + RS+
Sbjct: 243 ELFNEMRERNVVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQNRRSHD 302
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL LFR M EP+E+T++ V PA+ G + + IH + ++ + + L
Sbjct: 303 ALELFREMQTAS-VEPNEVTVVCVLPAVADLGALDLGRWIHRFALRKKLDR-SARIGTAL 360
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YAKCG I A FE ++ + SW ++I+GFA++G KEA+E F RM + P
Sbjct: 361 IDMYAKCGEITKAKLAFEGMT--ERETASWNALINGFAVNGCAKEALEVFARMIEEGFGP 418
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N VT + VL+AC+H GLVEEG ++F+ M E + P ++HYGC++D+LGRAG L++AE +
Sbjct: 419 NEVTMIGVLSACNHCGLVEEGRRWFNAM-ERFGIAPQVEHYGCMVDLLGRAGCLDEAENL 477
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P + N ++ + L AC + +V ERV +++++M+ G+YV++ N+ A R
Sbjct: 478 IQTMPYD-ANGIILSSFLFACGYFNDVLRAERVLKEVVKMDEDVAGNYVMLRNLYATRQR 536
Query: 307 YGDAERLRRVVDERNALK 324
+ D E +++++ +R K
Sbjct: 537 WTDVEDVKQMMKKRGTSK 554
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 139/314 (44%), Gaps = 48/314 (15%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L K+FDE+ R+ V+W +I G + G++ AR LF+EM R++V++ +IDGY +M
Sbjct: 176 LGSARKVFDEMSVRSKVSWTAVIVGYARCGDMSEARRLFDEMEDRDIVAFNAMIDGYVKM 235
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
G + L R + E E + ++ ++ NGDV N +L+
Sbjct: 236 ----GCVGLARELFN-EMRERNVVSWTSMVSGYCGNGDVENAKLMF-------------- 276
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
D+ E KN+ +W ++I G+ + +A+E F MQ
Sbjct: 277 -----------------------DLMPE-KNVFTWNAMIGGYCQNRRSHDALELFREMQT 312
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++PN VT + VL A + G ++ G ++ + ++ + LIDM + G +
Sbjct: 313 ASVEPNEVTVVCVLPAVADLGALDLG-RWIHRFALRKKLDRSARIGTALIDMYAKCGEIT 371
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A+ G+ T W L+ + +G + V +++ E G+G + V M +L
Sbjct: 372 KAKLAFEGMTERET--ASWNALINGFAVNGCAKEALEVFARMI--EEGFGPNEVTMIGVL 427
Query: 302 AGVWRYGDAERLRR 315
+ G E RR
Sbjct: 428 SACNHCGLVEEGRR 441
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 104/235 (44%), Gaps = 17/235 (7%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFR--RMVACEYTEPSEITILAV 90
+ +AR F R+ +I + + + LFR R A +T P T A+
Sbjct: 73 INHARRFFNATHTRDTFLCNSMIAAHFAARQFSQPFTLFRDLRRQAPPFT-PDGYTFTAL 131
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
L+HG K G F ++V+ L+D Y K G + SA K+F+++SV
Sbjct: 132 VKGCATRVATGEGTLLHGMVLKNGV-CFDLYVATALVDMYVKFGVLGSARKVFDEMSVRS 190
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
K VSWT++I G+A G EA F+ M+ + V F ++++ G V +
Sbjct: 191 K--VSWTAVIVGYARCGDMSEARRLFDEME----DRDIVAFNAMIDGYVKMGCVGLAREL 244
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
F++M E ++ + ++ G +E A+ + +P + NV W ++G
Sbjct: 245 FNEMRER-----NVVSWTSMVSGYCGNGDVENAKLMFDLMPEK--NVFTWNAMIG 292
>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 580
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 182/316 (57%), Gaps = 5/316 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+F +PER++V+W M+ + LE A LF +M +N VSWT +I G+ + R +
Sbjct: 204 SIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDE 263
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF--HIHVSN 124
AL LF +M E PS T +V A + + IHG+ + + +I + N
Sbjct: 264 ALHLFEQMRE-EGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFILN 322
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LID Y KCG + SA LF+ + K++VSW S+I+GFA +G G+E++ FERM + +
Sbjct: 323 ALIDMYCKCGQMRSATTLFK--GMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADI 380
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
+PN VTFL +L+AC H GLV EGL+ D M ++ V P HY +ID+LGR RLE+A
Sbjct: 381 RPNHVTFLGLLSACCHTGLVSEGLRILDSMEKDYGVCPRSDHYAIMIDLLGRNNRLEEAM 440
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+ P +V +W LLGAC HGN+++ R + ++E G YV++YNI A
Sbjct: 441 GLIKRAPKGSDHVGMWGALLGACRIHGNMDLARRAAEVLFQLEPGNAARYVMVYNIYAAA 500
Query: 305 WRYGDAERLRRVVDER 320
R+ +A ++RR++ ER
Sbjct: 501 SRWDEARQVRRLMMER 516
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 164/350 (46%), Gaps = 37/350 (10%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++ K+F LP +N +WN++I+ + G A +L ++MP N+VS+ +I G
Sbjct: 65 IQSAHKVFHVLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHH 124
Query: 62 NRSNGALALFRRMV-ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+L +F+ M+ C E T++++ + G + +HG G N+ +I
Sbjct: 125 GFRKESLNVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNS-NI 183
Query: 121 HVSNCLIDTYAKCG------CIFSALKLFEDIS-----------------------VERK 151
+ N LID Y KCG IFS + + +S ++ K
Sbjct: 184 IIGNALIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEK 243
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
N VSWT++I+GFA +G G EA+ FE+M++ + P+ TF SVL+AC+ L+ G +
Sbjct: 244 NTVSWTALIAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIH 303
Query: 212 DKMVEEC--EVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
++ + +I LIDM + G++ A + G+ + ++V W +L+ +
Sbjct: 304 GHIIRSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHEK--DIVSWNSLITGFAQ 361
Query: 270 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319
+G+ E V +++E + ++V +L+ G R++D
Sbjct: 362 NGHGEESLAVFERMIEAD--IRPNHVTFLGLLSACCHTGLVSEGLRILDS 409
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 103/227 (45%), Gaps = 13/227 (5%)
Query: 104 QLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 163
+L+H + K F ++N LID Y+KC I SA K+F + V KN SW IIS +
Sbjct: 34 KLLHSHFIKTAL-IFTTFLANRLIDFYSKCDSIQSAHKVFHVLPV--KNTHSWNIIISAY 90
Query: 164 AMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECE-VLP 222
+ G+ EA ++M KPN V++ S+++ H G +E L F M+++C VL
Sbjct: 91 SRSGLFNEAHNLLDQMP----KPNLVSYNSLISGLGHHGFRKESLNVFKTMLKQCSNVLF 146
Query: 223 DIKHYGCLIDMLGRAGRLEQAEKV--ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVT 280
D L+ G E +V A+ I +N+++ L+ A G ++ +
Sbjct: 147 DEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKCGEPDISFSIF 206
Query: 281 RKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPG 327
++ E + V Y A R DA L + E+N + +
Sbjct: 207 SRMPERDVVSWTSMVAAY---AQASRLEDAHWLFSQMQEKNTVSWTA 250
>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 558
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 117/301 (38%), Positives = 185/301 (61%), Gaps = 4/301 (1%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G L++A +FEEMP R++VSW+ +I + + ALALF+RM +P E+ +L+V
Sbjct: 133 GFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSV 192
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
AI GD+ + I G+ + G F + + L+D +++CGCI ++++F+++
Sbjct: 193 VSAISILGDLELGKWIRGFISRNGLE-FTVSLGTALVDMFSRCGCIEESMRVFDEMG--E 249
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
+N+++WT++I+G A+HG EA+ F M+ +P+ VTF VL ACSHGGLV EG
Sbjct: 250 RNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHV 309
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
F+ + E + P +HYGC++D+LGRAG L +A K G+P N ++WRTLLGAC H
Sbjct: 310 FESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIR-PNSIIWRTLLGACVNH 368
Query: 271 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSL 330
+E+ E+V KI E++ + GDYVL+ N+ GV R+ + +R + E+ K PG SL
Sbjct: 369 NYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRISKKPGCSL 428
Query: 331 V 331
+
Sbjct: 429 I 429
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 130/275 (47%), Gaps = 16/275 (5%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
L YARS+F+ + + ++ II + + S + +A P T V
Sbjct: 36 ASLSYARSIFDLIAFPDTFAFNTIIRAHADSSPSFSLSLFSKMAMAG--VSPDHFTFPFV 93
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A + ++ +H K GF++ ++V N LI Y CG + ALK+FE++
Sbjct: 94 LKACAR---LQTGLDLHSLLFKLGFDS-DVYVQNGLIHFYGCCGFLDFALKVFEEMP--E 147
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKV-VLKPNRVTFLSVLNACSHGGLVEEGLK 209
++LVSW+S+I+ FA +G G EA+ F+RMQ V +KP+ V LSV++A S G +E G K
Sbjct: 148 RDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELG-K 206
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
+ + + + L+DM R G +E++ +V + NV+ W L+ +
Sbjct: 207 WIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGER--NVLTWTALINGLAV 264
Query: 270 HGNVEMGERVTRKILEM-ERGYGGDYVLMYNILAG 303
HG R EM G+ D+V +L
Sbjct: 265 HGR---SAEALRMFYEMRNHGFQPDHVTFTGVLVA 296
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 35/166 (21%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+++ ++FDE+ ERN++TW +I GL G A +F EM
Sbjct: 237 IEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEM------------------ 278
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNC-QLIHGYGEKRGFNAFHI 120
R++G +P +T V A G V + + G
Sbjct: 279 -RNHG-------------FQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPE 324
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 166
H C++D + G + A K + + + R N + W +++ H
Sbjct: 325 HYG-CMVDLLGRAGLLNEACKFVDGMPI-RPNSIIWRTLLGACVNH 368
>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Vitis vinifera]
Length = 654
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/332 (36%), Positives = 196/332 (59%), Gaps = 10/332 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ +F+ + ++ ++WN MI G K G LE A + FE+MPCR++VSW II GY +
Sbjct: 281 LRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQK 340
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY--GEKRGFNAFH 119
LF MVA E P +TI+ + A + G + + + IHG+ + +AF
Sbjct: 341 GDCLMVQRLFENMVA-ENIWPDFVTIINLVSAAAEIGALHHGRWIHGWVVRMQMKIDAF- 398
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+ + ID Y KCG I A +F +++ K++ WT++I+GFA HG G +A++ F M
Sbjct: 399 --LGSAFIDMYWKCGSIKRACMVFREVT--EKDVTVWTTMITGFAFHGYGSKALQLFYEM 454
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
Q+ V+ PN+VTF++VL ACSH G V +GL+ F+ M E + P ++HYGCL+D+LGR+GR
Sbjct: 455 QEYVM-PNQVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEPGVEHYGCLVDLLGRSGR 513
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
+ + V +P + + +W +L AC +GN+E+ E +++L++E G YVL+ N
Sbjct: 514 FSEVKDVIEMMPMKPSR-SIWGAVLSACRAYGNIEIAEIAGKELLKLEPEKEGGYVLLSN 572
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
I A R+ ++++R +++ R K G S V
Sbjct: 573 IYATSGRWKHSDKIREIMESRGVKKTAGCSSV 604
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/365 (22%), Positives = 151/365 (41%), Gaps = 58/365 (15%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELE--------------YARSLFEEMPCR 46
FL SK ++ + + + +ITG +G L+ A +F++M
Sbjct: 135 FLLQASKFLSQVMQ---IHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAP 191
Query: 47 NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLI 106
+ VS+ +I GY + + AL MV +P E T+L + + GD + + +
Sbjct: 192 DAVSFNIMIFGYAKKGHNIEALKFLHEMVGLG-LKPDEFTMLGLLICCGRLGDAQLGKSV 250
Query: 107 HGYGEKRGF-NAFHIHVSNCLIDTYAKC-------------------------------G 134
H + E+RG + ++ ++N L+D Y KC G
Sbjct: 251 HAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVG 310
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
+ A FED+ ++LVSW SII+G+A G FE M + P+ VT +++
Sbjct: 311 NLEIAHNFFEDMPC--RDLVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINL 368
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
++A + G + G ++ V ++ D IDM + G +++A V + +
Sbjct: 369 VSAAAEIGALHHG-RWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEK- 426
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLR 314
+V VW T++ +FHG G + + EM+ + V +L G +
Sbjct: 427 -DVTVWTTMITGFAFHG---YGSKALQLFYEMQEYVMPNQVTFVAVLTACSHSGFVSQGL 482
Query: 315 RVVDE 319
R+ +
Sbjct: 483 RIFNS 487
>gi|357124741|ref|XP_003564056.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g34160-like [Brachypodium distachyon]
Length = 594
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/322 (37%), Positives = 185/322 (57%), Gaps = 14/322 (4%)
Query: 13 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFR 72
P+ L+T ++ K G+L AR +F+EM R+V SW ++ G + ALALF
Sbjct: 151 PDVRLIT--TLVDSYAKCGDLASARKVFDEMVVRDVASWNALLAGLAQGTEPTLALALFH 208
Query: 73 RMVAC-----EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
R+V EP+E+TI+A A Q G +++ +H + K G N ++ V N LI
Sbjct: 209 RLVGSFRELPPREEPNEVTIVAALSACAQIGSLQDGLYVHEFARKIGVNG-NVRVCNALI 267
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y+KCG + AL++F I E + LVS+ + I +MHG G +A+ F+ M + +P+
Sbjct: 268 DMYSKCGSLDLALEVFHSIKREDRTLVSYNTAIQAVSMHGHGGDALRLFDEMPTFI-EPD 326
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
VT+++VL C+H GLV++GL+ F M VLP++KHYG ++D+LGRAGRL +A
Sbjct: 327 EVTYIAVLCGCNHAGLVDDGLRVFHSM----RVLPNVKHYGAVVDLLGRAGRLAEAYDTI 382
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P ++V+W+TLLGA HG+VE+ E K+ E+ GDYVL+ N+ A R+
Sbjct: 383 VSMPFP-ADIVLWQTLLGAAKTHGDVELAELAATKLDELGSNVDGDYVLLSNVYASKARW 441
Query: 308 GDAERLRRVVDERNALKFPGRS 329
D R+R + + K PG S
Sbjct: 442 ADVRRVRDTMRSNDVRKVPGFS 463
>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
Length = 575
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/331 (36%), Positives = 190/331 (57%), Gaps = 7/331 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + ++FD + ER++V+WN MI G GE++ AR +F M R+ SW+ ++ YT+
Sbjct: 122 VAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKG 181
Query: 62 NRSNGALALFRRM-VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
RS AL L+R M AC P T+++V A G + +H + E G +
Sbjct: 182 RRSKDALELWREMRAAC--VNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVE-LDV 238
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+ LID YAKCG I +++++F + V K++++W+S+I G A HG G +A+ F RM
Sbjct: 239 KLGTALIDMYAKCGDIENSVRVFHSMPV--KDVLTWSSMIIGLANHGFGHDALSLFSRML 296
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
L+PN VTF+ VL +C+H GLV +G K+F M V P ++HYGC++D+LGR+G +
Sbjct: 297 SEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHI 356
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+A+++ +P E + V+WR LLGAC + NVE+ E K+ ++ G YVL+ NI
Sbjct: 357 EEAKQLIRDMPFE-PDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPHADGHYVLLSNI 415
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + +RR + + PGRS +
Sbjct: 416 YAQANSWEGVAEMRRTLRRERIQRIPGRSSI 446
>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
Length = 614
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 118/325 (36%), Positives = 190/325 (58%), Gaps = 4/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LF +PERN+V+W+ M++G K G+LE AR +F++MP +N+V+WT ++ + +
Sbjct: 246 ELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDE 305
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A LF +M E ++++ A ++G + + IH Y KR HV N L
Sbjct: 306 AGKLFAQMKEAS-VELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGR-STHVCNAL 363
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID + KCGC+ A +F+ +V+ K+ VSW SII GFAMHG G +A+E F +M++ P
Sbjct: 364 IDMFCKCGCVNRADYVFDTETVQ-KDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNP 422
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ VT ++VL+AC+H G V+EG + F M + ++P I+HYGC+ID+LGR G +++A +
Sbjct: 423 DAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDL 482
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E N V+W +LL AC H NVE E ++ +++ G+Y ++ NI A +
Sbjct: 483 IKSMPWE-PNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQ 541
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ D + R + + K G S V
Sbjct: 542 WSDMAKARMQMKGTGSQKTAGSSWV 566
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 146/315 (46%), Gaps = 49/315 (15%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
D K+FDE+PER++V+WN + +V+ GEL R LF+EMP ++ VSW I+DGYT+
Sbjct: 179 FSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKA 238
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
A LF+RM E +++ W
Sbjct: 239 GEVEAAFELFQRM--------PERNVVS-----WST------------------------ 261
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
++ Y K G + A +F+ + KNLV+WT ++S A G+ EA + F +M++
Sbjct: 262 ----MVSGYCKKGDLEMARVIFDKM--PSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKE 315
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++ + +S+L AC+ G + G K + V + + LIDM + G +
Sbjct: 316 ASVELDVAAVVSILAACAESGSLSLG-KRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVN 374
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM-ERGYGGDYVLMYNI 300
+A+ V + + V W +++G + HG+ G++ +M ++G+ D V M N+
Sbjct: 375 RADYVFD-TETVQKDSVSWNSIIGGFAMHGH---GDKALELFAQMKQQGFNPDAVTMINV 430
Query: 301 LAGVWRYGDAERLRR 315
L+ G + RR
Sbjct: 431 LSACTHMGFVDEGRR 445
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 95/203 (46%), Gaps = 18/203 (8%)
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LID Y+K G A K+F+++ +++VSW + ++ G + F+ M
Sbjct: 165 VGNALIDAYSKNGGFSDARKVFDEM--PERDVVSWNTAMAAMVREGELAGVRKLFDEMP- 221
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ + V++ ++L+ + G VE + F +M E ++ + ++ + G LE
Sbjct: 222 ---EKDTVSWNTILDGYTKAGEVEAAFELFQRMPER-----NVVSWSTMVSGYCKKGDLE 273
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A + +PS+ N+V W ++ AC+ G V+ ++ ++ E D + +IL
Sbjct: 274 MARVIFDKMPSK--NLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVEL--DVAAVVSIL 329
Query: 302 AGVWRYGD---AERLRRVVDERN 321
A G +R+ R V +RN
Sbjct: 330 AACAESGSLSLGKRIHRYVRKRN 352
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 126/329 (38%), Positives = 193/329 (58%), Gaps = 9/329 (2%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FD +P RN V+ M++G K ++ ARS+F + +++VSW +I GYT+ + A
Sbjct: 315 VFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEA 374
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF-----NAFHIHV 122
L LFR M+ E P+ T + A D+ + H + K GF I V
Sbjct: 375 LGLFR-MLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFV 433
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
N LID Y KCG + L++FE++ VE K+ VSW ++I G+A +G G EA+E F++M +
Sbjct: 434 GNSLIDMYMKCGSVEEGLRVFENM-VE-KDHVSWNTMIIGYAQNGYGMEALELFQKMLES 491
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
KP+ VT + L ACSH GLVEEG ++F M +E +LP HY C++D+LGRAG LE+
Sbjct: 492 GEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEE 551
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302
A+ + +P + + VVW +LL AC H N+ +G+ V KI E++ G YVL+ N+ +
Sbjct: 552 AKDLIESMPKQ-PDAVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYS 610
Query: 303 GVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ R+GDA +R+++ R +K PG S +
Sbjct: 611 ELGRWGDAVSVRKLMRRRGVVKQPGCSWI 639
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 162/311 (52%), Gaps = 12/311 (3%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
+L K+FD + ERN+ ++N +I+ L++WG ++ + LF MP ++ SW +I G+ +
Sbjct: 74 YLDYARKVFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQ 133
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+R AL F RM ++ ++ + + A + D++ IHG K + + +
Sbjct: 134 HDRFEEALDWFVRMHRDDFV-LNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKY-SLDV 191
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+ + LID Y+KCG + A ++F+ +E KN+VSW +I+ + +G EA+E F RM
Sbjct: 192 FMGSGLIDFYSKCGLVGCARRVFD--GMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMT 249
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
++ KP+ VT SV++AC+ +EG++ ++V+ + D+ L+DM + GR+
Sbjct: 250 ELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRV 309
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
+A V +P + N V T++ + +V+ + I + D V +
Sbjct: 310 NEARCVFDRMP--VRNAVSETTMVSGYAKSASVKAARSMFATIKQ------KDIVSWNAL 361
Query: 301 LAGVWRYGDAE 311
+AG + G+ E
Sbjct: 362 IAGYTQNGENE 372
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 101/233 (43%), Gaps = 37/233 (15%)
Query: 101 RNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS------------- 147
R+ + +HG + F + + N LID Y KCG + A K+F+ +S
Sbjct: 41 RDARSVHGRLIQTPFCE-EVFIQNRLIDVYGKCGYLDYARKVFDRMSERNVFSFNSIIST 99
Query: 148 ----------------VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191
+ K+ SW S+I+GFA H +EA++ F RM + N +F
Sbjct: 100 LMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSF 159
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
S L+ACS ++ G + ++ + + D+ LID + G + A +V G+
Sbjct: 160 GSGLSACSRLKDLKLGAQIHG-LISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGM- 217
Query: 252 SEITNVVVWRTLLGACSFHG-NVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
E NVV W L+ +G +E E R E G+ D V + ++++
Sbjct: 218 -EEKNVVSWNCLITCYEQNGPAIEALEAFGRMT---ELGFKPDEVTLASVVSA 266
>gi|326504712|dbj|BAK06647.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 658
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 110/318 (34%), Positives = 185/318 (58%), Gaps = 5/318 (1%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ ++ +WN +++GL+ + AR LF++MP R+ +SW+ ++ GY + SN AL LF
Sbjct: 340 KSHIASWNALMSGLLHRNLMHEARQLFDDMPERDTISWSTLLSGYVQSGHSNKALQLFYL 399
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M+ EP+++T+ + A+ +G + + IH Y ++S LID YAKC
Sbjct: 400 MLGAG-VEPNDVTLASTLSAVADSGMLEQGRFIHDYIISNSIQ-LTDNLSAGLIDMYAKC 457
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + A++LF + + ++ W +II A+HG ++E F +Q+ +KPN VT++
Sbjct: 458 GSVADAIQLFSHVKHKLSSVSPWNAIICSLAIHGHAHTSLELFLELQRTNIKPNSVTYIG 517
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VLNAC H GLV EG F+ M E + P IKHYGC++D+LGRAG LE+AE + +P
Sbjct: 518 VLNACCHAGLVTEGRHHFESMSREYGIQPTIKHYGCMVDLLGRAGHLEEAENLIQMMPMR 577
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
++VV+W ++L A HGNV +GE+ ++ +++ +G V + NI A R+ + +
Sbjct: 578 -SDVVIWGSILAAARTHGNVALGEKAAEELAKIDPNHGASKVALSNIFAEAARWNNVSLV 636
Query: 314 RRVV--DERNALKFPGRS 329
R+ + ++ N +F G S
Sbjct: 637 RKELQDEDENMGRFSGSS 654
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 149/313 (47%), Gaps = 38/313 (12%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++F+++P++N VTWN M+ G +K G L A +F +P R+ VSW IIDGY R + ++
Sbjct: 200 EIFEQMPDKNTVTWNAMLNGYLKAGMLPMAAEVFGRIPERDAVSWLTIIDGYIRADCTSE 259
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL + M+A T + ++ + ++ V Q +H K GF+A H V L
Sbjct: 260 ALRAYVAMMAEVDTRGNAALLVDLIKVCARHAAVLEGQQLHTVILKDGFDA-HPFVQATL 318
Query: 127 IDTYAKC-------------------------------GCIFSALKLFEDISVERKNLVS 155
I Y C + A +LF+D+ ++ +S
Sbjct: 319 IHFYGSCDLLDIARMQFKLSDKSHIASWNALMSGLLHRNLMHEARQLFDDM--PERDTIS 376
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215
W++++SG+ G +A++ F M ++PN VT S L+A + G++E+G D ++
Sbjct: 377 WSTLLSGYVQSGHSNKALQLFYLMLGAGVEPNDVTLASTLSAVADSGMLEQGRFIHDYII 436
Query: 216 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEM 275
L D G LIDM + G + A ++ S + ++++V W ++ + + HG+
Sbjct: 437 SNSIQLTDNLSAG-LIDMYAKCGSVADAIQLFSHVKHKLSSVSPWNAIICSLAIHGHAHT 495
Query: 276 GERVTRKILEMER 288
+ LE++R
Sbjct: 496 SLEL---FLELQR 505
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 109/217 (50%), Gaps = 14/217 (6%)
Query: 8 LFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 65
LFDE+P R+ N ++ L + G L+ A+ + EMP R+ VS+T ++ R +
Sbjct: 67 LFDEIPLALRDPAAHNTLLASLARAGRLDLAQGMLAEMPQRDTVSYTTVLTALARAGHAE 126
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
A+A+FR M+A + P+E+T+ V A+ + HG +RG N F I +N
Sbjct: 127 DAVAVFRGMLAQD-VPPNEVTLAGVLTALALERPPVPVGVAHGVTVRRGLNGFLIVATN- 184
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
L+ YA + A ++FE + KN V+W ++++G+ GM A E F R+
Sbjct: 185 LVHAYAAASQVCFAREIFEQM--PDKNTVTWNAMLNGYLKAGMLPMAAEVFGRI------ 236
Query: 186 PNR--VTFLSVLNACSHGGLVEEGLKFFDKMVEECEV 220
P R V++L++++ E L+ + M+ E +
Sbjct: 237 PERDAVSWLTIIDGYIRADCTSEALRAYVAMMAEVDT 273
>gi|357438957|ref|XP_003589755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478803|gb|AES60006.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 891
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 118/325 (36%), Positives = 188/325 (57%), Gaps = 2/325 (0%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
KLF+ +PER++ +WN M+TG ++ G+L A LF MP +NV++WT ++ GY + S
Sbjct: 253 KLFERMPERDMPSWNTMVTGFIQNGDLNRAEQLFHAMPQKNVITWTAMMTGYVQHGLSEE 312
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL LF +M A + +P+ T + V A + Q IH K F +V + L
Sbjct: 313 ALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLPEGQQIHQMISKTVFQE-STYVVSAL 371
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
I+ Y+KCG A K+F+D +L++W +I+ +A HG G EA+ F +MQ++ +
Sbjct: 372 INMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGMIAAYAHHGYGNEAINLFNKMQELGFQA 431
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N VT++ +L ACSH GL +EG K+FD++++ + HY CLID+ GRAGRL++A +
Sbjct: 432 NDVTYVGLLTACSHAGLFDEGFKYFDELLKNRYIQVREDHYTCLIDLCGRAGRLDEALNI 491
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
G+ E++ + +W LL CS HGN ++G+ V K+L+ME Y+L N+ A V
Sbjct: 492 IEGLGKEVS-LSLWGALLAGCSVHGNADIGKLVADKVLKMEPENADTYLLASNMYASVGM 550
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+A +R + ++ K PG S +
Sbjct: 551 REEAANVRMKMKKKGLKKQPGCSWI 575
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 149/358 (41%), Gaps = 94/358 (26%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFE-------------------- 41
+ + K+FDE+ +R+ W MI+G +K G + AR LF+
Sbjct: 61 VNEARKVFDEMSKRDSCLWTTMISGYIKCGLINEARKLFDRPDAQKSVIVWTAMVSGYIK 120
Query: 42 ------------EMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILA 89
EMP RNVVSW +IDGY R R+ AL LF RM E + ++
Sbjct: 121 MNRIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEALDLFGRM-----PERNVVSWNT 175
Query: 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS-------------------------- 123
V A+ G + + + + +R ++ V+
Sbjct: 176 VMTALAHCGRIDDAERLFNEMRERDVVSWTTMVAGLSKNGRVDAAREVFDKMPIRNVVSW 235
Query: 124 NCLIDTYAKCGCIFSALKLFEDI-----------------------------SVERKNLV 154
N +I YA+ G ALKLFE + ++ +KN++
Sbjct: 236 NAMIAGYAQNGRFDEALKLFERMPERDMPSWNTMVTGFIQNGDLNRAEQLFHAMPQKNVI 295
Query: 155 SWTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFLSVLNACSHGGLVEEGLKFFDK 213
+WT++++G+ HG+ +EA++ F +MQ LKP TF++VL ACS + EG + +
Sbjct: 296 TWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLPEGQQIH-Q 354
Query: 214 MVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
M+ + LI+M + G A+K+ S +++ W ++ A + HG
Sbjct: 355 MISKTVFQESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGMIAAYAHHG 412
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/310 (24%), Positives = 136/310 (43%), Gaps = 62/310 (20%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N I+ L + G++ AR +F+EM R+ WT +I GY + N A LF R
Sbjct: 49 NYFISKLCREGKVNEARKVFDEMSKRDSCLWTTMISGYIKCGLINEARKLFDR------- 101
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P + V+ A ++ Y K I A
Sbjct: 102 -PDAQKSVIVWTA--------------------------------MVSGYIKMNRIEEAE 128
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
+LF ++ V +N+VSW ++I G+A +G +EA++ F RM + N V++ +V+ A +H
Sbjct: 129 RLFNEMPV--RNVVSWNTMIDGYARNGRTQEALDLFGRMP----ERNVVSWNTVMTALAH 182
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
G +++ + F++M E D+ + ++ L + GR++ A +V +P I NVV W
Sbjct: 183 CGRIDDAERLFNEMRER-----DVVSWTTMVAGLSKNGRVDAAREVFDKMP--IRNVVSW 235
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGD---AERLRRVV 317
++ + +G R + ER D ++ G + GD AE+L +
Sbjct: 236 NAMIAGYAQNG------RFDEALKLFERMPERDMPSWNTMVTGFIQNGDLNRAEQLFHAM 289
Query: 318 DERNALKFPG 327
++N + +
Sbjct: 290 PQKNVITWTA 299
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 102/210 (48%), Gaps = 27/210 (12%)
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER--MQK 181
N I + G + A K+F+++S +++ WT++ISG+ G+ EA + F+R QK
Sbjct: 49 NYFISKLCREGKVNEARKVFDEMS--KRDSCLWTTMISGYIKCGLINEARKLFDRPDAQK 106
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
V + + ++++ +EE + F++M + ++ + +ID R GR +
Sbjct: 107 SV-----IVWTAMVSGYIKMNRIEEAERLFNEMP-----VRNVVSWNTMIDGYARNGRTQ 156
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + +P NVV W T++ A + G ++ ER+ ++ E D V ++
Sbjct: 157 EALDLFGRMPER--NVVSWNTVMTALAHCGRIDDAERLFNEMRER------DVVSWTTMV 208
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
AG+ + G + R V D K P R++V
Sbjct: 209 AGLSKNGRVDAAREVFD-----KMPIRNVV 233
>gi|414886077|tpg|DAA62091.1| TPA: methyltransferase small domain protein [Zea mays]
Length = 656
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 109/316 (34%), Positives = 188/316 (59%), Gaps = 3/316 (0%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ + +WN ++ L++ G + AR LF++MP R+ VSW+ +I GY + RS+ AL LF
Sbjct: 340 KSHTASWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLFYS 399
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M+ EP+E+T+ + AI +G + + IH Y R ++S+ LID YAKC
Sbjct: 400 MLNTS-IEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQ-LTDNLSSGLIDMYAKC 457
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G I A++ F ++ + ++ W ++I A+HG +++ F ++Q+ +KPN +TF+
Sbjct: 458 GSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKPNSITFIG 517
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VL+AC H G V +G +F+ M E + P IKHYGC++D+LGRAG LE+AE++ S +P +
Sbjct: 518 VLSACCHAGTVTKGKYYFESMTREYGIQPTIKHYGCMVDLLGRAGYLEEAEQLVSMMPMK 577
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
+VV+W ++L A GNV +GER ++ ++++ +G + + NI A + + +
Sbjct: 578 -PDVVIWGSILSASRAQGNVALGERAAEELAKLDQTHGASKIALSNIYADAGHWINVSVV 636
Query: 314 RRVVDERNALKFPGRS 329
R+ + + N + GRS
Sbjct: 637 RKELQDANLERLTGRS 652
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 137/299 (45%), Gaps = 35/299 (11%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFD + RN VTWNVM+ G VK ++ A +F +P R+ VSW +IDGY + + A
Sbjct: 201 LFDGMTYRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPERDEVSWLTLIDGYICADLISDA 260
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
+ + +MV E+ ++ + A + V Q +H K GF+A H V L+
Sbjct: 261 MKAYVQMVGEVGANDYEVLLVDLMKACARYSAVTEGQQLHTVILKNGFDA-HAFVQATLV 319
Query: 128 DTYAKCGCI---------------------FSAL----------KLFEDISVERKNLVSW 156
Y CG I +AL +LF+D+ ++ VSW
Sbjct: 320 HFYGCCGLIGLAQMTFRLSDKSHTASWNALLAALLRNGLIREARELFDDM--PERDTVSW 377
Query: 157 TSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVE 216
+++ISG+ G A++ F M ++PN VT S L+A + G +++G D ++
Sbjct: 378 STMISGYVQTGRSDMALKLFYSMLNTSIEPNEVTLASALSAIADSGTLDQGKWIHDYIMN 437
Query: 217 ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEM 275
L D G LIDM + G + A + + + + ++V W ++ + + HG M
Sbjct: 438 RPVQLTDNLSSG-LIDMYAKCGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHM 495
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 113/220 (51%), Gaps = 12/220 (5%)
Query: 2 LKDGSKLFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDG 57
L +LFDE P R+ N ++ L + G L+ A+ L EEMP R+ VS+T ++
Sbjct: 59 LASALQLFDETPPPLRDATARNSVLAALTRAGYLDRAQGLLEEMPRIHRDAVSYTTLVTS 118
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
+ R + A+A+FR M++ E P+E T+ A + G +IHG+ +R +
Sbjct: 119 FARAGHAARAVAVFRSMLS-ENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRALDG 177
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
F I +N L+ YA + SA LF+ ++ +N V+W +++G+ M A E F
Sbjct: 178 FVIVATN-LVHAYAGVLELCSARALFDGMTY--RNTVTWNVMLNGYVKAKMIDMAAEVFW 234
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE 217
R+ + + V++L++++ L+ + +K + +MV E
Sbjct: 235 RIP----ERDEVSWLTLIDGYICADLISDAMKAYVQMVGE 270
>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
Length = 590
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 189/325 (58%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD++ ER+LV WN MI G + G ++ ARSLFEEMP RNV+SW+ +IDG+ R +
Sbjct: 235 ELFDQMTERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVRCGEAKE 294
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL F+ M+ C P + + A Q G + + +H Y EK+ + + V L
Sbjct: 295 ALEHFQSMLRCG-IRPDRVAAVGAVSACAQLGALEQGRWLHSYLEKKKVLS-DVVVQTAL 352
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y KCG + A+ +FE S+ +++V+W +I G HG G +AV F RM+ +
Sbjct: 353 IDMYMKCGRMDLAMLIFE--SMPERSVVTWNVMIVGLGTHGYGLDAVMLFHRMEAERVAV 410
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ ++ L++L AC+H GLV EGL+ F +M ++ + P ++HYG L+D+LGRAGRL+QA
Sbjct: 411 DDLSLLAMLTACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHA 470
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E T +W +LL AC H VE+ E ++ + G YVL+ NI A
Sbjct: 471 IETMPMEPTP-ELWGSLLAACRSHSCVELAELSVERLANLGADDSGVYVLLSNIYADEGM 529
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+GD R+R+++ + K GRS++
Sbjct: 530 WGDVLRIRKLMSDEGMRKDIGRSVI 554
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 106/254 (41%), Gaps = 28/254 (11%)
Query: 31 GELEYARSLFEEMP---CRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITI 87
G A ++F +P R+ W I + R AL F RM +C P T
Sbjct: 59 GAAPLADAVFARLPEPAARDPFPWNTAIRLHAP-GRPRAALLYFARMRSCG-VRPDAYTF 116
Query: 88 LAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS 147
AV A R L+H +RG A + N LI Y + S K+F++
Sbjct: 117 PAVLKACGCAPGCRAGLLVHAEAVRRGLGA-DLFTVNALISFYCRILDCISGRKVFDEAG 175
Query: 148 VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL--SVLNACSH--GGL 203
++LVSW S+++G+ G A E F+ M P R F ++++ G
Sbjct: 176 GVSRDLVSWNSMVAGYVGCGEMGLAQELFDEM------PQRDAFSWGALIDGYGKQGGAG 229
Query: 204 VEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTL 263
V+ + FD+M E D+ + +ID R GR+++A + +P NV+ W +
Sbjct: 230 VDRARELFDQMTER-----DLVCWNSMIDGYARHGRMDEARSLFEEMPER--NVISWSIV 282
Query: 264 LGACSFHGNVEMGE 277
+ G+V GE
Sbjct: 283 I-----DGHVRCGE 291
>gi|356573508|ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Glycine max]
Length = 629
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 125/330 (37%), Positives = 200/330 (60%), Gaps = 6/330 (1%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ ++F+E+ E ++V+W V++ G+VK +E + +F+EMP RN V+WT +I GY
Sbjct: 166 EARRVFEEIEEPSVVSWTVVLEGVVKCEGVESGKVVFDEMPERNEVAWTVLIKGYVGSGF 225
Query: 64 SNGALALFRRMV-ACEYT-EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ A L + MV C + + IT+ +V A Q+GDV + +H Y K +
Sbjct: 226 TKEAFLLLKEMVFGCGFGFGLNSITLCSVLSACSQSGDVSVGRWVHCYAVKAVGWDLGVM 285
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V L+D YAKCG I +AL +F + R+N+V+W +++ G AMHGMGK VE F M +
Sbjct: 286 VGTSLVDMYAKCGRISAALMVFRHMP--RRNVVAWNAMLCGLAMHGMGKVVVEMFACMVE 343
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
V KP+ VTF+++L++CSH GLVE+G ++F + + P+I+HY C++D+LGRAGRLE
Sbjct: 344 EV-KPDAVTFMALLSSCSHSGLVEQGWQYFHDLERAYGIRPEIEHYACMVDLLGRAGRLE 402
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AE + +P N VV +LLGAC HG + +GE++ R++++M+ ++L+ N+
Sbjct: 403 EAEDLVKKLPIP-PNEVVLGSLLGACYAHGKLRLGEKIMRELVQMDPLNTEYHILLSNMY 461
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + A LR+V+ R K PG S +
Sbjct: 462 ALCGKADKANSLRKVLKNRGIRKVPGMSSI 491
>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
Length = 558
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 117/301 (38%), Positives = 184/301 (61%), Gaps = 4/301 (1%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G L++A FEEMP R++VSW+ +I + + ALALF+RM +P E+ +L+V
Sbjct: 133 GFLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSV 192
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
AI GD+ + I G+ + G F + + L+D +++CGCI ++++F+++
Sbjct: 193 VSAISILGDLELGKWIRGFISRNGLE-FTVSLGTALVDMFSRCGCIEESMRVFDEMG--E 249
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
+N+++WT++I+G A+HG EA+ F M+ +P+ VTF VL ACSHGGLV EG
Sbjct: 250 RNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHV 309
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
F+ + E + P +HYGC++D+LGRAG L +A K G+P N ++WRTLLGAC H
Sbjct: 310 FESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIR-PNSIIWRTLLGACVNH 368
Query: 271 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSL 330
+E+ E+V KI E++ + GDYVL+ N+ GV R+ + +R + E+ K PG SL
Sbjct: 369 NYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRISKKPGCSL 428
Query: 331 V 331
+
Sbjct: 429 I 429
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 129/275 (46%), Gaps = 16/275 (5%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
L YARS+F+ + + ++ II + + S + +A P T V
Sbjct: 36 ASLSYARSIFDLIAFPDTFAFNTIIRAHADSSPSFSLSLFSKMTMAG--VSPDHFTFPFV 93
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A + ++ +H K GF++ ++V N LI Y CG + ALK FE++
Sbjct: 94 LKACAR---LQTGLDLHSLLFKLGFDS-DVYVQNGLIHFYGCCGFLDFALKAFEEMP--E 147
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKV-VLKPNRVTFLSVLNACSHGGLVEEGLK 209
++LVSW+S+I+ FA +G G EA+ F+RMQ V +KP+ V LSV++A S G +E G K
Sbjct: 148 RDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELG-K 206
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
+ + + + L+DM R G +E++ +V + NV+ W L+ +
Sbjct: 207 WIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGER--NVLTWTALINGLAV 264
Query: 270 HGNVEMGERVTRKILEM-ERGYGGDYVLMYNILAG 303
HG R EM G+ D+V +L
Sbjct: 265 HGR---SAEALRMFYEMRNHGFQPDHVTFTGVLVA 296
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 35/166 (21%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+++ ++FDE+ ERN++TW +I GL G A +F EM
Sbjct: 237 IEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEM------------------ 278
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNC-QLIHGYGEKRGFNAFHI 120
R++G +P +T V A G V + + G
Sbjct: 279 -RNHG-------------FQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPE 324
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 166
H C++D + G + A K + + + R N + W +++ H
Sbjct: 325 HY-GCMVDLLGRAGLLNEACKFVDGMPI-RPNSIIWRTLLGACVNH 368
>gi|414886078|tpg|DAA62092.1| TPA: hypothetical protein ZEAMMB73_488923 [Zea mays]
Length = 714
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 109/316 (34%), Positives = 188/316 (59%), Gaps = 3/316 (0%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ + +WN ++ L++ G + AR LF++MP R+ VSW+ +I GY + RS+ AL LF
Sbjct: 340 KSHTASWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLFYS 399
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M+ EP+E+T+ + AI +G + + IH Y R ++S+ LID YAKC
Sbjct: 400 MLNTS-IEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQ-LTDNLSSGLIDMYAKC 457
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G I A++ F ++ + ++ W ++I A+HG +++ F ++Q+ +KPN +TF+
Sbjct: 458 GSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKPNSITFIG 517
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VL+AC H G V +G +F+ M E + P IKHYGC++D+LGRAG LE+AE++ S +P +
Sbjct: 518 VLSACCHAGTVTKGKYYFESMTREYGIQPTIKHYGCMVDLLGRAGYLEEAEQLVSMMPMK 577
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
+VV+W ++L A GNV +GER ++ ++++ +G + + NI A + + +
Sbjct: 578 -PDVVIWGSILSASRAQGNVALGERAAEELAKLDQTHGASKIALSNIYADAGHWINVSVV 636
Query: 314 RRVVDERNALKFPGRS 329
R+ + + N + GRS
Sbjct: 637 RKELQDANLERLTGRS 652
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 137/300 (45%), Gaps = 35/300 (11%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFD + RN VTWNVM+ G VK ++ A +F +P R+ VSW +IDGY + + A
Sbjct: 201 LFDGMTYRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPERDEVSWLTLIDGYICADLISDA 260
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
+ + +MV E+ ++ + A + V Q +H K GF+A H V L+
Sbjct: 261 MKAYVQMVGEVGANDYEVLLVDLMKACARYSAVTEGQQLHTVILKNGFDA-HAFVQATLV 319
Query: 128 DTYAKCGCI---------------------FSAL----------KLFEDISVERKNLVSW 156
Y CG I +AL +LF+D+ ++ VSW
Sbjct: 320 HFYGCCGLIGLAQMTFRLSDKSHTASWNALLAALLRNGLIREARELFDDM--PERDTVSW 377
Query: 157 TSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVE 216
+++ISG+ G A++ F M ++PN VT S L+A + G +++G D ++
Sbjct: 378 STMISGYVQTGRSDMALKLFYSMLNTSIEPNEVTLASALSAIADSGTLDQGKWIHDYIMN 437
Query: 217 ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMG 276
L D G LIDM + G + A + + + + ++V W ++ + + HG M
Sbjct: 438 RPVQLTDNLSSG-LIDMYAKCGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMS 496
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 113/220 (51%), Gaps = 12/220 (5%)
Query: 2 LKDGSKLFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDG 57
L +LFDE P R+ N ++ L + G L+ A+ L EEMP R+ VS+T ++
Sbjct: 59 LASALQLFDETPPPLRDATARNSVLAALTRAGYLDRAQGLLEEMPRIHRDAVSYTTLVTS 118
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
+ R + A+A+FR M++ E P+E T+ A + G +IHG+ +R +
Sbjct: 119 FARAGHAARAVAVFRSMLS-ENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRALDG 177
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
F I +N L+ YA + SA LF+ ++ +N V+W +++G+ M A E F
Sbjct: 178 FVIVATN-LVHAYAGVLELCSARALFDGMTY--RNTVTWNVMLNGYVKAKMIDMAAEVFW 234
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE 217
R+ + + V++L++++ L+ + +K + +MV E
Sbjct: 235 RIP----ERDEVSWLTLIDGYICADLISDAMKAYVQMVGE 270
>gi|357496515|ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355493561|gb|AES74764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 637
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 128/330 (38%), Positives = 199/330 (60%), Gaps = 8/330 (2%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ K+F+ + R++V+W+ + GLVKW +E R LF+EMP RN V+WT +I GY
Sbjct: 176 EARKMFEGIEVRSVVSWSCFLEGLVKWESVESGRVLFDEMPERNEVAWTVMIVGYVGNGF 235
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
+ A L + MV S +T+ +V A Q+GDV + +H Y K F + V
Sbjct: 236 TKEAFLLLKEMVFGCGFRLSFVTLCSVLSACSQSGDVCVGRWVHCYAVKEMGLDFGVMVG 295
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
L+D YAKCG I +AL +F S+ ++N+V+W +++ G AMHGMGK AV+ F M + V
Sbjct: 296 TSLVDMYAKCGRINAALSVFR--SMLKRNVVAWNAMLGGLAMHGMGKIAVDMFPSMVEEV 353
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
KP+ VTF+++L+ACSH GLVE+G +F + + P+I+HY C++ +LGRAGRLE+A
Sbjct: 354 -KPDGVTFMALLSACSHSGLVEKGWDYFHDLEPVYRIKPEIEHYACMVGLLGRAGRLEEA 412
Query: 244 EKVASG--IPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
E + IP N VV +L+G+C HG +++GE++ R +LEM+ ++++ N+
Sbjct: 413 EIMVKNMRIP---PNEVVLGSLIGSCYAHGRLQLGEKIMRDLLEMDPLNTEYHIVLSNMY 469
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + A LR+V+ +R K PG S +
Sbjct: 470 ALSGKVEKANSLRQVLKKRGIKKVPGMSSI 499
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 127/315 (40%), Gaps = 49/315 (15%)
Query: 34 EYARSLFEEMPC--RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVF 91
+AR LF+E+P ++ V +T +I R +L LF +M + + + A+
Sbjct: 74 SHARKLFDEIPQSHKDSVDYTALI----RHCPPFESLKLFIQMRQFDLPLDGVVMVCALN 129
Query: 92 P-AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE- 149
A GD + +H K GF F V N L++ Y K G + A K+FE I V
Sbjct: 130 ACARLGGGDTKVGSQMHVGVVKFGFVKFD-KVCNALMNVYVKFGLVGEARKMFEGIEVRS 188
Query: 150 ----------------------------RKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+N V+WT +I G+ +G KEA F +++
Sbjct: 189 VVSWSCFLEGLVKWESVESGRVLFDEMPERNEVAWTVMIVGYVGNGFTKEA---FLLLKE 245
Query: 182 VV----LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
+V + + VT SVL+ACS G V G V+E + + L+DM +
Sbjct: 246 MVFGCGFRLSFVTLCSVLSACSQSGDVCVGRWVHCYAVKEMGLDFGVMVGTSLVDMYAKC 305
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297
GR+ A V + NVV W +LG + HG MG+ M D V
Sbjct: 306 GRINAALSVFRSMLKR--NVVAWNAMLGGLAMHG---MGKIAVDMFPSMVEEVKPDGVTF 360
Query: 298 YNILAGVWRYGDAER 312
+L+ G E+
Sbjct: 361 MALLSACSHSGLVEK 375
>gi|242091784|ref|XP_002436382.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
gi|241914605|gb|EER87749.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
Length = 507
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 195/331 (58%), Gaps = 4/331 (1%)
Query: 2 LKDGSKLFDELPER-NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L + ++FDELP + N +++ + G ++ A SLF MP RNV+SWT ++ GY +
Sbjct: 135 LAESRRVFDELPPHSDAAARNALLSAYARCGRVDDAESLFAGMPDRNVISWTAMVSGYAQ 194
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
R A+ F M P+E+T+ +V PA G + + + Y RG ++
Sbjct: 195 NGRHEEAVRTFLEMWEGCGVRPNEVTVSSVLPACAAVGALALGRKVERYARGRGMLT-NV 253
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+V+N L++ YAKCG I A +F I +R +L SW S+I FA+HG+ +E + F +++
Sbjct: 254 YVANALVEMYAKCGSIRRAWMVFRGIGKQR-DLCSWNSMIMAFAVHGLWREVLGLFHKLR 312
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
KP+ +TF+ V+ AC+HGGLV+EG F+ M EE + P I+HYGC++D+LGRAG L
Sbjct: 313 MTGAKPDGITFVGVILACTHGGLVDEGKLLFNSMREEFGLKPRIEHYGCMVDLLGRAGLL 372
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
++A+ + + +P E + V+W LLGACSFHGN+E+ E K++ +E + V++ NI
Sbjct: 373 KEADSLIASMPME-PDAVIWGALLGACSFHGNLELAEVAVEKLMRLEPQNTANLVILSNI 431
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ ++ +++ E++ K G S +
Sbjct: 432 YASHGKWDGVAQVWKLLKEKDHKKSAGYSFI 462
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 122/316 (38%), Positives = 185/316 (58%), Gaps = 6/316 (1%)
Query: 17 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVA 76
LV N ++ VK L AR LF+E+P R++VSWT II G + + +L LF M
Sbjct: 238 LVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDM-Q 296
Query: 77 CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136
EP I + +V A G + + + Y E++G + IH+ L+D YAKCGCI
Sbjct: 297 ISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIE-WDIHIGTALVDMYAKCGCI 355
Query: 137 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLN 196
AL +F I +N+ +W +++ G AMHG G EA+++FE M ++PN VTFL++L
Sbjct: 356 EMALHIFNGIP--NRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILT 413
Query: 197 ACSHGGLVEEGLKFFDKMVEE-CEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
AC H GLV EG +F +M+ + P ++HYGC+ID+L RAG L++A K +P
Sbjct: 414 ACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLP-P 472
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
+V++W LL AC +GNVE+ + + +LE++ G YVL+ NI A R+ D R+RR
Sbjct: 473 DVLIWGALLSACKANGNVELSQEILSHLLELKSQDSGVYVLLSNIYATNERWDDVTRVRR 532
Query: 316 VVDERNALKFPGRSLV 331
++ ++ KFPG S++
Sbjct: 533 LMKDKGIRKFPGSSVI 548
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 134/244 (54%), Gaps = 13/244 (5%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
KWG A +F+EM R+VVSWTG+I GY R + A+ LF +M P+ T +
Sbjct: 155 KWGG---AGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKMDVV----PNVATFV 207
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
+V A + G + + +HG KR F + V N L+D Y KC C+ A KLF+++
Sbjct: 208 SVLVACGRMGYLSMGKGVHGLVYKRAF-GIGLVVGNALVDMYVKCECLCEARKLFDELP- 265
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
+++VSWTSIISG K+++E F MQ ++P+R+ SVL+AC+ G ++ G
Sbjct: 266 -DRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYG- 323
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
++ + +E + DI L+DM + G +E A + +GIP+ N+ W LLG +
Sbjct: 324 RWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNR--NIFTWNALLGGLA 381
Query: 269 FHGN 272
HG+
Sbjct: 382 MHGH 385
>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 722
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 116/325 (35%), Positives = 189/325 (58%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+ F ++ RNL M++G K G L+ A+ +F++ +++V WT +I Y +
Sbjct: 268 EFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQE 327
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL +F M C +P +++ +V A G + + +H G + + ++N L
Sbjct: 328 ALRVFEEM-CCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLES-ELSINNAL 385
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
I+ YAKCG + + +FE + R+N+VSW+S+I+ +MHG +A+ F RM++ ++P
Sbjct: 386 INMYAKCGGLDATRDVFEKMP--RRNVVSWSSMINALSMHGEASDALSLFARMKQENVEP 443
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N VTF+ VL CSH GLVEEG K F M +E + P ++HYGC++D+ GRA L +A +V
Sbjct: 444 NEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEV 503
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P +NVV+W +L+ AC HG +E+G+ ++ILE+E + G VLM NI A R
Sbjct: 504 IESMPVA-SNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQR 562
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ D +RRV++E+N K G S +
Sbjct: 563 WEDVRNIRRVMEEKNVFKEKGLSRI 587
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 125/270 (46%), Gaps = 34/270 (12%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G + YAR++F+EM R+VV+W +I+ Y R + A LF M P E+ + +
Sbjct: 160 GRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVM-PDEMILCNI 218
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV-- 148
A + G++R + I+ + + H+ L+ YA GC+ A + F +SV
Sbjct: 219 VSACGRTGNMRYNRAIYEFLIENDVR-MDTHLLTALVTMYAGAGCMDMAREFFRKMSVRN 277
Query: 149 ---------------------------ERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
E+K+LV WT++IS + +EA+ FE M
Sbjct: 278 LFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCC 337
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KP+ V+ SV++AC++ G++++ K+ + + ++ LI+M + G L+
Sbjct: 338 SGIKPDVVSMFSVISACANLGILDKA-KWVHSCIHVNGLESELSINNALINMYAKCGGLD 396
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHG 271
V +P NVV W +++ A S HG
Sbjct: 397 ATRDVFEKMPRR--NVVSWSSMINALSMHG 424
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 3/120 (2%)
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
+D YA CG I A +F+++S +++V+W ++I + G+ EA + FE M+ +
Sbjct: 152 FMDMYASCGRINYARNVFDEMS--HRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVM 209
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
P+ + ++++AC G + ++ ++E +V D L+ M AG ++ A +
Sbjct: 210 PDEMILCNIVSACGRTGNMRYNRAIYEFLIEN-DVRMDTHLLTALVTMYAGAGCMDMARE 268
>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
Length = 921
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 118/325 (36%), Positives = 190/325 (58%), Gaps = 4/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LF +PERN+V+W+ M++G K G+LE AR +F++MP +N+V+WT ++ + +
Sbjct: 553 ELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDE 612
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A LF +M E ++++ A ++G + + IH Y KR HV N L
Sbjct: 613 AGKLFAQMKEAS-VELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGR-STHVCNAL 670
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID + KCGC+ A +F+ +V+ K+ VSW SII GFAMHG G +A+E F +M++ P
Sbjct: 671 IDMFCKCGCVNRADYVFDTETVQ-KDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNP 729
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ VT ++VL+AC+H G V+EG + F M + ++P I+HYGC+ID+LGR G +++A +
Sbjct: 730 DAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDL 789
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E N V+W +LL AC H NVE E ++ +++ G+Y ++ NI A +
Sbjct: 790 IKSMPWE-PNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQ 848
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ D + R + + K G S V
Sbjct: 849 WSDMAKARMQMKGTGSQKTAGSSWV 873
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 147/315 (46%), Gaps = 49/315 (15%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
D K+FDE+PER++V+WN + +V+ GEL R LF+EMP ++ VSW I+DGYT+
Sbjct: 486 FSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKA 545
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
A LF+RM E +++ W
Sbjct: 546 GEVEAAFELFQRM--------PERNVVS-----W-------------------------- 566
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ ++ Y K G + A +F+ + KNLV+WT ++S A G+ EA + F +M++
Sbjct: 567 --STMVSGYCKKGDLEMARVIFDKMP--SKNLVTWTIMVSACAQKGLVDEAGKLFAQMKE 622
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++ + +S+L AC+ G + G K + V + + LIDM + G +
Sbjct: 623 ASVELDVAAVVSILAACAESGSLSLG-KRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVN 681
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM-ERGYGGDYVLMYNI 300
+A+ V + + V W +++G + HG+ G++ +M ++G+ D V M N+
Sbjct: 682 RADYVFD-TETVQKDSVSWNSIIGGFAMHGH---GDKALELFAQMKQQGFNPDAVTMINV 737
Query: 301 LAGVWRYGDAERLRR 315
L+ G + RR
Sbjct: 738 LSACTHMGFVDEGRR 752
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 95/203 (46%), Gaps = 18/203 (8%)
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LID Y+K G A K+F+++ +++VSW + ++ G + F+ M
Sbjct: 472 VGNALIDAYSKNGGFSDARKVFDEMP--ERDVVSWNTAMAAMVREGELAGVRKLFDEMP- 528
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ + V++ ++L+ + G VE + F +M E ++ + ++ + G LE
Sbjct: 529 ---EKDTVSWNTILDGYTKAGEVEAAFELFQRMPER-----NVVSWSTMVSGYCKKGDLE 580
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A + +PS+ N+V W ++ AC+ G V+ ++ ++ E D + +IL
Sbjct: 581 MARVIFDKMPSK--NLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVEL--DVAAVVSIL 636
Query: 302 AGVWRYGD---AERLRRVVDERN 321
A G +R+ R V +RN
Sbjct: 637 AACAESGSLSLGKRIHRYVRKRN 659
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 186/311 (59%), Gaps = 5/311 (1%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I K G +E ARSLF+ M +N+VSW +I Y + N A+ LFRRM A E
Sbjct: 268 NALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQA-EKV 326
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+ IT+++V A G + + +H +++G ++ ++N LID YAKCG I A
Sbjct: 327 DFDYITMVSVISACASLGALNTGRWMHELVKRKGLE-INVSITNALIDMYAKCGNIDLAR 385
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
++FE + +++VSWTS+I A HG G++A++ F RM+ +KPN TF +V AC H
Sbjct: 386 EVFERLPC--RSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRH 443
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
GLVEEG K F+ M+ + ++P ++H C++D+LGRAG L +A + +P E +V VW
Sbjct: 444 SGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVE-PDVSVW 502
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320
LLG+C H N+E+ E V K+ ++ YVLM NI A R+ DA RLR++++ER
Sbjct: 503 GALLGSCRIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEER 562
Query: 321 NALKFPGRSLV 331
K PG SLV
Sbjct: 563 ELKKIPGHSLV 573
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 147/303 (48%), Gaps = 31/303 (10%)
Query: 17 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVA 76
L++ ++IT ++YAR +F++MP R+V W +I GY ALAL+ M
Sbjct: 62 LLSTKLIITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHG 121
Query: 77 C-----EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYA 131
YT P + AV A+ + +V +C ++ K GF++ + V + L+ Y+
Sbjct: 122 AGLFPDNYTFPFVVRSCAVLSALREGKEV-HCNIV-----KHGFDS-DVFVQSSLVAMYS 174
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191
+ G +F ++ V +N+VSWT++I+G+ + KE + F M +PN VT
Sbjct: 175 QSGETLGMELVFGEMVV--RNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTL 232
Query: 192 LSVLNACSHGGLVEEGLKFFD--KMVE----ECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
+SVL AC+ GL+F + K++ + V PD+ LI + G+ G +E A
Sbjct: 233 VSVLPACA-------GLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARS 285
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
+ G+ + N+V W ++ A + ++ R++ + + DY+ M ++++
Sbjct: 286 LFDGMV--VQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDF--DYITMVSVISACA 341
Query: 306 RYG 308
G
Sbjct: 342 SLG 344
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 98/209 (46%), Gaps = 8/209 (3%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E N+ N +I K G ++ AR +FE +PCR+VVSWT +I AL LF R
Sbjct: 362 EINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSR 421
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH-IHVSNCLIDTYAK 132
M E +P+ T AVF A +G V + H R ++ + C++D +
Sbjct: 422 MKD-EGVKPNSFTFAAVFTACRHSGLVEEGR-KHFESMMRDYSIMPGVEHCACMVDLLGR 479
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
G + A + + + VE ++ W +++ +H + A E++ +L P VTF
Sbjct: 480 AGSLMEAYEFIDKMPVE-PDVSVWGALLGSCRIHSNLELAELVAEKL--FLLDPQTVTFY 536
Query: 193 SVL-NACSHGGLVEEGLKFFDKMVEECEV 220
++ N + G E+ + K++EE E+
Sbjct: 537 VLMSNIYAEAGRWEDAAR-LRKLMEEREL 564
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 121/330 (36%), Positives = 196/330 (59%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+K+ KLF +PERN+++WN +I+G + G++E A LF+ MP NVVSW +I GY++
Sbjct: 307 VKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQN 366
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
++ AL LF +M + +P+ T V PA + H + GF + +
Sbjct: 367 GQAENALKLFGQMQMVD-MKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQS-DVL 424
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N L+ YAKCG I A K+F+ + +++ S +++I G+A++G KE++E FE+MQ
Sbjct: 425 VGNTLVGMYAKCGSIEDARKVFD--RMRQQDSASLSAMIVGYAINGCSKESLELFEQMQF 482
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
LKP+RVTF+ VL+AC H GLV+EG ++FD M + P ++HYGC+ID+LGRAG +
Sbjct: 483 TGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFD 542
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + + +P + + +W +LL AC H N+++GE+V + ++ + YVL+ NI
Sbjct: 543 EANDLINKMPIK-PDADMWGSLLSACRTHNNIDLGEKVAQHLIALNPQNPAPYVLLSNIY 601
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ D +R + +R K G S +
Sbjct: 602 AAAGRWDDIGSVRNRMKDRKVKKKLGCSWI 631
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 131/246 (53%), Gaps = 25/246 (10%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD++P+R++V+WN MI G V+ G +E A LF+E+P R+V++W ++ GY +
Sbjct: 219 ELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGDVEN 278
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS--- 123
A+ LF +M E + ++ + QNG V K F F I
Sbjct: 279 AVELFEKM-----PEQNLVSWNTMIAGYVQNGSV-----------KEAFKLFQIMPERNV 322
Query: 124 ---NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
N +I +A+ G + ALKLF+ ++ N+VSW ++I+G++ +G + A++ F +MQ
Sbjct: 323 ISWNAVISGFAQNGQVEEALKLFK--TMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQ 380
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
V +KPN TF VL AC+ ++E+G + + ++ D+ L+ M + G +
Sbjct: 381 MVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRS-GFQSDVLVGNTLVGMYAKCGSI 439
Query: 241 EQAEKV 246
E A KV
Sbjct: 440 EDARKV 445
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 158/309 (51%), Gaps = 35/309 (11%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +++ VK G L AR +F+EMP +NVVSWT +I Y R AL F M
Sbjct: 104 NKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVG-I 162
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+P+ T ++ PA D+ H K GF + ++ V N L+D YAK GCI A
Sbjct: 163 QPNHFTFASILPAC---TDLEVLGEFHDEIVKGGFES-NVFVGNGLVDMYAKRGCIEFAR 218
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
+LF+ + ++++VSW ++I+G+ +G+ ++A++ F+ + K + +T+ +++ +
Sbjct: 219 ELFDKMP--QRDVVSWNAMIAGYVQNGLIEDALKLFQE----IPKRDVITWNTMMAGYAQ 272
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
G VE ++ F+KM E+ ++ + +I + G +++A K+ +P NV+ W
Sbjct: 273 CGDVENAVELFEKMPEQ-----NLVSWNTMIAGYVQNGSVKEAFKLFQIMPER--NVISW 325
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN-ILAGVWRYGDAERLRRVVDE 319
++ + +G VE ++ + + E V+ +N ++AG + G AE
Sbjct: 326 NAVISGFAQNGQVEEALKLFKTMPECN-------VVSWNAMIAGYSQNGQAE-------- 370
Query: 320 RNALKFPGR 328
NALK G+
Sbjct: 371 -NALKLFGQ 378
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 134/282 (47%), Gaps = 26/282 (9%)
Query: 53 GIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEK 112
G++ + R AL + + MV P T ++ + + +L+H + +
Sbjct: 34 GLVKSLCKQGRLREALHILQDMVE-NGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQ 92
Query: 113 RGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEA 172
F I + N L+ Y K G + A ++F+++ V KN+VSWT++I+ +A H G+EA
Sbjct: 93 TQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPV--KNVVSWTAMIAAYARHEHGQEA 150
Query: 173 VENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVE---ECEVLPDIKHYGC 229
+ F MQ V ++PN TF S+L AC+ ++ E F D++V+ E V
Sbjct: 151 LGFFYEMQDVGIQPNHFTFASILPACTDLEVLGE---FHDEIVKGGFESNVFVG----NG 203
Query: 230 LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 289
L+DM + G +E A ++ +P +VV W ++ +G +E ++ ++I +
Sbjct: 204 LVDMYAKRGCIEFARELFDKMPQR--DVVSWNAMIAGYVQNGLIEDALKLFQEIPKR--- 258
Query: 290 YGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
D + ++AG + GD E + + K P ++LV
Sbjct: 259 ---DVITWNTMMAGYAQCGDVENAVELFE-----KMPEQNLV 292
>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
[Vitis vinifera]
Length = 788
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 121/330 (36%), Positives = 196/330 (59%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + LF ++ ++++V+WN M+ + G+++ A +FEEM +N+VSW +I G T+
Sbjct: 373 MDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQN 432
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL F M E +P + T + ++ + +H K G+ A +
Sbjct: 433 GSYLDALKSFMLM-GHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGY-ATDLF 490
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VSN LI YAKCG I SA LF+DI + ++VSW S+I+ +A++G G+EA++ F +M+
Sbjct: 491 VSNALITMYAKCGSISSAELLFKDI--DHFDVVSWNSLIAAYALNGNGREALKLFHKMEV 548
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ P+ VTF+ +L+ACSH GL+++GLK F MV+ + P +HY C++D+LGRAGRLE
Sbjct: 549 EGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLE 608
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++ G+ N +W LLGAC HGN+E+ + K+LE E +YVL+ N+
Sbjct: 609 EAFQLVRGMKIN-ANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQ 667
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ + R+RR++ E+ A K PG S +
Sbjct: 668 AEAGRWDEVARVRRLMKEKGAEKQPGWSWI 697
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 163/329 (49%), Gaps = 30/329 (9%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + +LFD++P RN+V WN MI V+ ++ A SLF EMP +N +SWT +I+GY RM
Sbjct: 249 IAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRM 308
Query: 62 NRSNGALALFRRM----VACEYTEPS---EITILAVFPAIWQNGDVRNC----QLIHGYG 110
+ + A L +M VA + S + + I+ +R+ +I GY
Sbjct: 309 GKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYS 368
Query: 111 E-KRGFNAFHIHVS---------NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 160
+ R A H+ N ++ +YA+ G + +A+K+FE++ + KN+VSW S+I
Sbjct: 369 QCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEM--KEKNIVSWNSLI 426
Query: 161 SGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEV 220
SG +G +A+++F M KP++ TF L++C+H ++ G K ++V +
Sbjct: 427 SGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVG-KQLHQLVMKSGY 485
Query: 221 LPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVT 280
D+ LI M + G + AE + I + +VV W +L+ A + +GN G
Sbjct: 486 ATDLFVSNALITMYAKCGSISSAELLFKDI--DHFDVVSWNSLIAAYALNGN---GREAL 540
Query: 281 RKILEME-RGYGGDYVLMYNILAGVWRYG 308
+ +ME G D V IL+ G
Sbjct: 541 KLFHKMEVEGVAPDEVTFVGILSACSHVG 569
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 136/286 (47%), Gaps = 47/286 (16%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ D +LFD +P+RN+V+WN MI + +E AR LF++MP R++ SWT +I YTR
Sbjct: 62 ISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDLYSWTLMITCYTR- 120
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN----- 116
NG LA R + + P W V ++ GY + R F+
Sbjct: 121 ---NGELAKAR-------------NLFNLLPYKW--NPVCCNAMVAGYAKNRQFDEARRL 162
Query: 117 -----AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKE 171
A + N ++ Y + G + L+ FE+++ +++VSW ++ GF G
Sbjct: 163 FDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMA--ERDVVSWNLMVDGFVEVGDLNS 220
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLI 231
+ E FE+ + PN V+++++L + G + E + FD+M + ++ + +I
Sbjct: 221 SWEFFEK----IPNPNTVSWVTMLCGFARFGKIAEARRLFDQM-----PIRNVVAWNAMI 271
Query: 232 DMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGE 277
+ +++A + +P + N + W T++ +G V MG+
Sbjct: 272 AAYVQNCHVDEAISLFMEMPEK--NSISWTTVI-----NGYVRMGK 310
>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 124/324 (38%), Positives = 184/324 (56%), Gaps = 6/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LF+++PE+N+++W MI +LE ARS FE MP RNVVSW +I Y + + +
Sbjct: 184 LFEKMPEKNVISWTSMIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYAKHGKFVES 243
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LF +M + E P T ++V A GD+ + IH + + V L
Sbjct: 244 LNLFVQMQS-EGVTPDGYTFVSVLSACSNLGDLEFGKYIHYLSGD--LSQSEVMVGTALT 300
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
+ YA+CG + A +F I + ++++ W II A+HG +EA++ F M+K LKPN
Sbjct: 301 EMYAQCGDVDKAFAVF--IKIGKRDVFCWNVIIKALALHGRSEEAIKIFLLMRKTGLKPN 358
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
TF S L ACSHGGLVEEG F+ M ++ +++P I HYGCLIDML R G+LE+A +
Sbjct: 359 DFTFTSALFACSHGGLVEEGHIIFNSMEKDYKIIPKITHYGCLIDMLCRNGQLEEAMLLV 418
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P + +V +W LLG C G++++ E+V K EME G YVL+ NI A ++
Sbjct: 419 EDMPFQ-PDVAIWGALLGGCRVTGDLKLAEKVVEKATEMETNESGVYVLLSNIHASAGQW 477
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
+A R+ +DE+ K G S+V
Sbjct: 478 IEAADARKKMDEKKISKKTGSSVV 501
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 136/334 (40%), Gaps = 87/334 (26%)
Query: 17 LVTWNVMITGLVKWGELEYARSLFEEMPCRNV----VSWTGIIDG------YTRMNR--- 63
+V WN MI G G + +F+EMP R + ++ +I+ Y R R
Sbjct: 19 IVIWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYVINSCCELEWYGRGKRVHC 78
Query: 64 -------------SNGALALFRRMVA---------CEYTEPSEI-TILAVFPA-IWQN-- 97
+N ++ +M A C+ +I + V P +W
Sbjct: 79 EIVKSGFESSYAVANSLFNMYLKMPASFDVGLASNCKLDYARKIFDDMCVRPVELWNQMI 138
Query: 98 ------GDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI----- 146
GDV++ + + +R ++ N +I YAK G + +A LFE +
Sbjct: 139 GKYVNIGDVKSARELFDIMPERDIVSW-----NSMILGYAKGGKVANARGLFEKMPEKNV 193
Query: 147 ------------------------SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
++ ++N+VSW S+IS +A HG E++ F +MQ
Sbjct: 194 ISWTSMIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYAKHGKFVESLNLFVQMQSE 253
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEG--LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ P+ TF+SVL+ACS+ G +E G + + + + EV+ L +M + G +
Sbjct: 254 GVTPDGYTFVSVLSACSNLGDLEFGKYIHYLSGDLSQSEVMVGT----ALTEMYAQCGDV 309
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
++A V I +V W ++ A + HG E
Sbjct: 310 DKAFAVFIKIGKR--DVFCWNVIIKALALHGRSE 341
>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 542
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 196/330 (59%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ K+FDE+P +NLVTWN M+ G K G+L AR +F MP ++VVSW+ +IDGY +
Sbjct: 164 IASARKVFDEMPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDGYVKG 223
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
A+ALF RM + + +E+T+++ A G + + +++H Y + I
Sbjct: 224 RVYGEAMALFERM-SFDGPMANEVTLVSALCACAHLGALEHGRMMHRYIVENEL-PLTIV 281
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ L+D YAKCG I AL +F S++ +++ W +II G A HG+ KEA+ F M+
Sbjct: 282 LQTSLVDMYAKCGAIHEALTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKM 341
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
V + P+ +T+L +L+ C+HGGLVEE FFD + + ++P ++HY C++D L RAG++
Sbjct: 342 VGIVPDEITYLCLLSCCAHGGLVEEAWYFFDCLRKH-GMIPKVEHYACMVDALSRAGQVS 400
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + +P + T+ ++ LL C HG +++ + V R+++E++ + G YV + NI
Sbjct: 401 EAYQFLCQMPVQPTSSMLG-ALLSGCMKHGKLDIAKVVGRRLVELDPNHDGRYVGLSNIY 459
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ DA+ +R ++ + K PG S +
Sbjct: 460 AADKRWDDAKNIREAMERKGVKKSPGFSFI 489
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 123/284 (43%), Gaps = 36/284 (12%)
Query: 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTE 81
++ + L +L+Y+ L +P +W +I ++ N ++ +F +M+
Sbjct: 52 LLFSALSPARDLDYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQ-NGVS 110
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
P +T + A + + +H + K G + + N LI YA C I SA K
Sbjct: 111 PDYLTYPFLVKATSKLLNQELGMAVHVHIVKSG-HEIDKFIQNSLIHMYASCRDIASARK 169
Query: 142 LFEDISVERKNLVSWTSIISGFAMHG---MGK---------------------------- 170
+F+++ RKNLV+W +++ G+A G M +
Sbjct: 170 VFDEMP--RKNLVTWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYG 227
Query: 171 EAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCL 230
EA+ FERM N VT +S L AC+H G +E G + + + E E+ I L
Sbjct: 228 EAMALFERMSFDGPMANEVTLVSALCACAHLGALEHG-RMMHRYIVENELPLTIVLQTSL 286
Query: 231 IDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
+DM + G + +A V + +V++W ++G + HG ++
Sbjct: 287 VDMYAKCGAIHEALTVFRACSLQEADVLIWNAIIGGLATHGLIK 330
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 117/329 (35%), Positives = 197/329 (59%), Gaps = 6/329 (1%)
Query: 4 DGSKLFDELPER-NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
D ++FD+ E +L++WN MI+G ++ G ++ A LF MP ++VVSW+ +I GY +
Sbjct: 323 DARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHE 382
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV 122
+ ALALF+ M P E +++ A + + IH Y + ++ +
Sbjct: 383 CFSEALALFQEM-QLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQV-NVIL 440
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
S LID Y KCGC+ +AL++F ++E K + +W ++I G AM+G ++++ F M+K
Sbjct: 441 STTLIDMYMKCGCVENALEVF--YAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKT 498
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
PN +TF+ VL AC H GLV +G +F+ M+ E ++ +IKHYGC++D+LGRAG L++
Sbjct: 499 GTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKE 558
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302
AE++ +P +V W LLGAC H + EMGER+ RK+++++ + G +VL+ NI A
Sbjct: 559 AEELIDSMPMA-PDVATWGALLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLSNIYA 617
Query: 303 GVWRYGDAERLRRVVDERNALKFPGRSLV 331
+G+ +R ++ + +K PG S++
Sbjct: 618 SKGNWGNVLEIRGIMAQHGVVKTPGCSMI 646
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 143/331 (43%), Gaps = 68/331 (20%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRN------------------- 47
++F+E P +LV+WN ++ G V+ GE+E A +FE MP RN
Sbjct: 161 RVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEK 220
Query: 48 --------------VVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPA 93
+VSW+ ++ Y + AL LF M + + A+ A
Sbjct: 221 ARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSAL-SA 279
Query: 94 IWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFED-------- 145
+ +V + +HG K G + + + N LI Y+ CG I A ++F+D
Sbjct: 280 CSRVLNVEMGRWVHGLAVKVGVEDY-VSLKNALIHLYSSCGEIVDARRIFDDGGELLDLI 338
Query: 146 ----------------------ISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
S+ K++VSW+++ISG+A H EA+ F+ MQ
Sbjct: 339 SWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHG 398
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
++P+ +S ++AC+H ++ G K+ + ++ ++ LIDM + G +E A
Sbjct: 399 VRPDETALVSAISACTHLATLDLG-KWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENA 457
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
+V + E V W ++ + +G+VE
Sbjct: 458 LEVFYAM--EEKGVSTWNAVILGLAMNGSVE 486
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 114/282 (40%), Gaps = 57/282 (20%)
Query: 10 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALA 69
D L+ ++ T LV + Y+ +F + N +W I+ + + S
Sbjct: 34 DPYAASRLINFSSHSTTLVPF---HYSLRIFNHLRNPNTFTWNTIMRAHLYLQNSPHQAL 90
Query: 70 LFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQL----IHGYGEKRGFNAFHIHVSNC 125
L ++ + +P T +P + Q R + +H + GF+ ++V N
Sbjct: 91 LHYKLFLASHAKPDSYT----YPILLQCCAARVSEFEGRQLHAHAVSSGFDG-DVYVRNT 145
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
L++ YA CG + SA ++FE+ V +LVSW ++++G+ G +EA FE M
Sbjct: 146 LMNLYAVCGSVGSARRVFEESPV--LDLVSWNTLLAGYVQAGEVEEAERVFEGM------ 197
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
P R T S +I + GR G +E+A +
Sbjct: 198 PERNTIAS----------------------------------NSMIALFGRKGCVEKARR 223
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME 287
+ +G+ ++V W ++ S + EMGE +EM+
Sbjct: 224 IFNGVRGRERDMVSWSAMV---SCYEQNEMGEEALVLFVEMK 262
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 106/257 (41%), Gaps = 43/257 (16%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ G + AR +FEE P ++VSW ++ GY + A +F M
Sbjct: 144 NTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGM------ 197
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P TI SN +I + + GC+ A
Sbjct: 198 -PERNTI----------------------------------ASNSMIALFGRKGCVEKAR 222
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
++F + +++VSW++++S + + MG+EA+ F M+ + + V +S L+ACS
Sbjct: 223 RIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSR 282
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
VE G ++ + + V + LI + G + A ++ E+ +++ W
Sbjct: 283 VLNVEMG-RWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDD-GGELLDLISW 340
Query: 261 RTLLGACSFHGNVEMGE 277
+++ G+++ E
Sbjct: 341 NSMISGYLRCGSIQDAE 357
>gi|15240281|ref|NP_198573.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170664|sp|Q9FHR3.1|PP403_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g37570
gi|9757967|dbj|BAB08303.1| unnamed protein product [Arabidopsis thaliana]
gi|332006824|gb|AED94207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 550
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 127/362 (35%), Positives = 195/362 (53%), Gaps = 37/362 (10%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR- 60
L++ +FD +PERNL +WN ++ GLVK G+L A+ LF+EMP R+++S+T +IDGY +
Sbjct: 192 LEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIISYTSMIDGYAKG 251
Query: 61 ------------------------------MNRSNGALALFRRMVACEYTEPSEITILAV 90
+ N A +F M A + +P E ++ +
Sbjct: 252 GDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCA-KNVKPDEFIMVGL 310
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH-VSNCLIDTYAKCGCIFSALKLFEDISVE 149
A Q G C+ + Y +R N F H V LID AKCG + A KLFE++
Sbjct: 311 MSACSQMGCFELCEKVDSYLHQR-MNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEMP-- 367
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
+++LVS+ S++ G A+HG G EA+ FE+M + P+ V F +L C LVEEGL+
Sbjct: 368 QRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEGLR 427
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
+F+ M ++ +L HY C++++L R G+L++A ++ +P E + W +LLG CS
Sbjct: 428 YFELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFE-AHASAWGSLLGGCSL 486
Query: 270 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
HGN E+ E V R + E+E G YVL+ NI A + R+ D LR ++E K GRS
Sbjct: 487 HGNTEIAEVVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITKICGRS 546
Query: 330 LV 331
+
Sbjct: 547 WI 548
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 127/272 (46%), Gaps = 14/272 (5%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
++++V + K +L AR +F EMP RN VSWT ++ Y + A ++F
Sbjct: 142 DKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVVAYVKSGELEEAKSMFDL 201
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M E + + A+ + ++GD+ N + + KR ++ +ID YAK
Sbjct: 202 M-----PERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIISY-----TSMIDGYAKG 251
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + SA LFE+ ++ +W+++I G+A +G EA + F M +KP+ +
Sbjct: 252 GDMVSARDLFEE--ARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVG 309
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+++ACS G E K + + LIDM + G +++A K+ +P
Sbjct: 310 LMSACSQMGCFELCEKVDSYLHQRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEMPQR 369
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
++V + +++ + HG R+ K+++
Sbjct: 370 --DLVSYCSMMEGMAIHGCGSEAIRLFEKMVD 399
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 129/326 (39%), Gaps = 51/326 (15%)
Query: 39 LFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNG 98
+FE +P W +I GY+ +++ RM+ P E T V NG
Sbjct: 65 VFERVPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNG 124
Query: 99 DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 158
VR +HG + GF+ + V +D Y KC +FSA K+F ++ +N VSWT+
Sbjct: 125 QVRVGSSVHGLVLRIGFDK-DVVVGTSFVDFYGKCKDLFSARKVFGEMP--ERNAVSWTA 181
Query: 159 IISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEEC 218
++ + G +EA F+ M + N ++ ++++ G + K FD+M +
Sbjct: 182 LVVAYVKSGELEEAKSMFDLMP----ERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKR- 236
Query: 219 EVLPDIKHYGCLIDMLGRAGRLEQAEKV--------------------ASGIPSEITNV- 257
DI Y +ID + G + A + +G P+E V
Sbjct: 237 ----DIISYTSMIDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVF 292
Query: 258 ------------VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
+ L+ ACS G E+ E+V + + + YV+ I
Sbjct: 293 SEMCAKNVKPDEFIMVGLMSACSQMGCFELCEKVDSYLHQRMNKFSSHYVVPALIDMNA- 351
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
+ G +R ++ +E P R LV
Sbjct: 352 KCGHMDRAAKLFEE-----MPQRDLV 372
>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
Length = 638
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 119/323 (36%), Positives = 194/323 (60%), Gaps = 5/323 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+ F+ +P +++V+W M+ K G + AR F+ MP RN+VSW +I Y + + +
Sbjct: 269 RCFEMMPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHE 328
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL L+ +M + + P EIT++AV A + GD+ +++H Y +N + + N L
Sbjct: 329 ALDLYNQMQS-QGLAPDEITLVAVLSASGRIGDLTVGKMVHLYIRDNIYNP-DVSLVNSL 386
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+D YAKCG + +A+ LF ++ +N+VSW II G AMHG + + F M P
Sbjct: 387 LDMYAKCGQVDTAISLFSEMC--NRNVVSWNVIIGGLAMHGRALDTITFFRSMVTDSFAP 444
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +TF+++L+ACSHGGL+E G +F+ M V +++HY C++D+LGR G LE+A +
Sbjct: 445 DGITFVALLSACSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCL 504
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P + +VVVW LLGAC HGNV++G +V +++LE+E GG +VL+ N+L +
Sbjct: 505 IKEMPMK-PDVVVWGALLGACRIHGNVKIGRQVIKQLLELEGISGGLFVLISNLLYETHQ 563
Query: 307 YGDAERLRRVVDERNALKFPGRS 329
+ D +RLR+++ E K G S
Sbjct: 564 WEDMKRLRKLMKEWGTRKDMGVS 586
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 128/280 (45%), Gaps = 34/280 (12%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ G L +R F+EM RNVVSW +I GY + + +LF M +
Sbjct: 151 NALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFL 210
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
E E T++++ A Q G++ +L+H G I + + L+D Y KCG ++ A
Sbjct: 211 E-DEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLI-LESALVDMYGKCGDLWMAR 268
Query: 141 KLFEDISVE-----------------------------RKNLVSWTSIISGFAMHGMGKE 171
+ FE + ++ +N+VSW ++IS + G E
Sbjct: 269 RCFEMMPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHE 328
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLI 231
A++ + +MQ L P+ +T ++VL+A G + G K + + PD+ L+
Sbjct: 329 ALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTVG-KMVHLYIRDNIYNPDVSLVNSLL 387
Query: 232 DMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
DM + G+++ A + S + + NVV W ++G + HG
Sbjct: 388 DMYAKCGQVDTAISLFSEMCNR--NVVSWNVIIGGLAMHG 425
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 118/243 (48%), Gaps = 7/243 (2%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G L +AR LF+ +P + V + II Y + AL L R M+ P+E T+ V
Sbjct: 60 GVLCHARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLR-RGILPNEFTLPFV 118
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A + +HG + G + V N L+ +YA G + + + F+++ V+R
Sbjct: 119 VKACTIAQAREHALAVHGVALRLGLVG-QVFVGNALLHSYASAGSLGDSRRFFDEM-VDR 176
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
N+VSW S+I G+A G +E F M++ + T +S+L ACS G +E G
Sbjct: 177 -NVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLV 235
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
+M+ + D+ L+DM G+ G L A + +P I +VV W ++L A + H
Sbjct: 236 HCRMLVSGSRV-DLILESALVDMYGKCGDLWMARRCFEMMP--IKSVVSWTSMLCAQTKH 292
Query: 271 GNV 273
G+V
Sbjct: 293 GSV 295
>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Brachypodium distachyon]
Length = 747
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 183/316 (57%), Gaps = 4/316 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
+++ N ++ K +E A+ +F+ MP ++ VSW +I GY + +N A+ + M
Sbjct: 305 DIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQ 364
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
E + + T ++V PA G ++ +H K G N ++V CLID YAKCG
Sbjct: 365 KHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNV-DVYVGTCLIDLYAKCGK 423
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ A+ LFE + R++ W +IISG +HG G EA+ F RMQ+ +KP+ VTF+S+L
Sbjct: 424 LAEAMLLFEKMP--RRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLL 481
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
ACSH GLV++G FFD M +++P KHY C+ DMLGRAG+L++A +P +
Sbjct: 482 AACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIK-P 540
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
+ VW LLGAC HGNVEMG+ ++ + E++ G YVLM N+ A V ++ + +R
Sbjct: 541 DSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRS 600
Query: 316 VVDERNALKFPGRSLV 331
+V +N K PG S +
Sbjct: 601 LVRRQNLQKTPGWSSI 616
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 159/306 (51%), Gaps = 9/306 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
++ L N +I K G LE A+ +F M CR++V+W II G + ++ AL +F+
Sbjct: 201 DKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQG 260
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M + P +T++++ AI Q GD R+ + +H Y +RG++ I N ++D YAK
Sbjct: 261 MRGSGVS-PDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKL 319
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFL 192
I +A ++F+ + V+ + VSW ++I+G+ +G+ EAVE + MQK LK + TF+
Sbjct: 320 SNIEAAQRMFDSMPVQ--DSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFV 377
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
SVL A SH G +++G++ + + + D+ CLID+ + G+L +A + +P
Sbjct: 378 SVLPAYSHLGALQQGMRMHALSI-KIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPR 436
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312
T W ++ HG+ E +T + G D+V ++LA G ++
Sbjct: 437 RSTG--PWNAIISGLGVHGH--GAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQ 492
Query: 313 LRRVVD 318
R D
Sbjct: 493 GRSFFD 498
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 122/249 (48%), Gaps = 6/249 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
++ T ++ +++G + A +F+EM R+V +W ++ G R R+ A+ LF RMV
Sbjct: 102 SVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMV 161
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
E +T+ +V P GD ++H Y K G + + V N LID Y K G
Sbjct: 162 G-EGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDK-ELFVCNALIDVYGKLGM 219
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ A +F +E ++LV+W SIISG G A++ F+ M+ + P+ +T +S+
Sbjct: 220 LEEAQCVFH--GMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLA 277
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+A + GG ++ + DI ++DM + +E A+++ +P +
Sbjct: 278 SAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMP--VQ 335
Query: 256 NVVVWRTLL 264
+ V W TL+
Sbjct: 336 DSVSWNTLI 344
>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 1058
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 197/335 (58%), Gaps = 16/335 (4%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++DGS +F + ++ V+WN +I+GL + L+ AR +FE+MP R+VVSWT II Y +
Sbjct: 606 VEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQA 665
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL LF M+A +P+++T+ ++ A G ++ + H K GF+ F +
Sbjct: 666 GHGEVALDLFLDMLA-RGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTF-LF 723
Query: 122 VSNCLIDTYAKCG-----CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
V N LI Y KCG C+F + +L++W +++ G A +G+GKEA++ F
Sbjct: 724 VGNSLITMYFKCGYEDGFCVFEEMP--------EHDLITWNAVLVGCAQNGLGKEAIKIF 775
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
E+M+ + P++++FL VL ACSH GLV+EG F+ M ++ ++P + HY C++D+LGR
Sbjct: 776 EQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGR 835
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
AG L +AE + +P + + V+W LLGAC H NVE+G+RV ++ +M + YVL
Sbjct: 836 AGYLSEAEALIENMPVK-PDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATYVL 894
Query: 297 MYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ N+ A + +R+++ ++ K PG S +
Sbjct: 895 LSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWI 929
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 132/264 (50%), Gaps = 15/264 (5%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
LK+ KLFDE+PE+N+ +WN ++TG + AR LF++MP RN VSW +I GY +
Sbjct: 280 LKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHI 339
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ A +F +M P + + V AI D+ + K G+ +
Sbjct: 340 SDYWEAWDVFVKMCRT-VARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEG-DVV 397
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V + +++ Y + G + A+ FE ++ +N SWT++I+ FA G +A++ +ER+ +
Sbjct: 398 VGSAILNAYTRNGSLDLAMHFFE--TMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPE 455
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ T +++ A + G +++ FD+++ P++ + +I + G L+
Sbjct: 456 QTV----ATKTAMMTAYAQVGRIQKARLIFDEILN-----PNVVAWNAIIAGYTQNGMLK 506
Query: 242 QAEKVASGIPSEITNVVVWRTLLG 265
+A+ + +P + N W ++
Sbjct: 507 EAKDLFQKMP--VKNSASWAAMIA 528
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/318 (22%), Positives = 144/318 (45%), Gaps = 54/318 (16%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+++ ++F+E+ +R++V+WN MI G + G+++ AR LF+ +N+ +WT ++ GY +
Sbjct: 187 VEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKE 246
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R A +F M TE + ++ A+ QNGD++N + + ++ ++
Sbjct: 247 GRIEEAREVFESM-----TERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASW--- 298
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
N ++ Y C + A +LF+ + +N VSW +ISG+ EA + F +M +
Sbjct: 299 --NSVVTGYCHCYRMSEARELFDQMP--ERNSVSWMVMISGYVHISDYWEAWDVFVKMCR 354
Query: 182 VVLKPNRVTFL-----------------------------------SVLNACSHGGLVEE 206
V +P++ F+ ++LNA + G ++
Sbjct: 355 TVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDL 414
Query: 207 GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
+ FF+ M E E + +I + GRL+ A ++ +P + V ++ A
Sbjct: 415 AMHFFETMPERNEY-----SWTTMIAAFAQCGRLDDAIQLYERVPEQ--TVATKTAMMTA 467
Query: 267 CSFHGNVEMGERVTRKIL 284
+ G ++ + +IL
Sbjct: 468 YAQVGRIQKARLIFDEIL 485
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 119/256 (46%), Gaps = 17/256 (6%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E ++V + ++ + G L+ A FE MP RN SWT +I + + R + A+ L+ R
Sbjct: 393 EGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYER 452
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
+ E + T A+ A Q G ++ +LI + E N + N +I Y +
Sbjct: 453 V-----PEQTVATKTAMMTAYAQVGRIQKARLI--FDEILNPN---VVAWNAIIAGYTQN 502
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + A LF+ + V KN SW ++I+GF + +EA+E + + P+ +F S
Sbjct: 503 GMLKEAKDLFQKMPV--KNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTS 560
Query: 194 VLNACSHGGLVEEGLKFFDKMVEE-CEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
L+AC++ G VE G ++ C+ + + LI M + G +E V I
Sbjct: 561 ALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMN--GLISMYAKCGNVEDGSHVFRTI-- 616
Query: 253 EITNVVVWRTLLGACS 268
+ + V W +L+ S
Sbjct: 617 RVKDTVSWNSLISGLS 632
>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Glycine max]
Length = 529
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 188/331 (56%), Gaps = 6/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ +LFDE+PE+N+ TWN MI G K G E A LF +MP R+++SWT +++ Y+R
Sbjct: 158 MASAGRLFDEMPEKNVATWNAMIDGYGKLGNAESAEFLFNQMPARDIISWTTMMNCYSRN 217
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R +ALF ++ + P E+T+ V A G + + +H Y +GF+ ++
Sbjct: 218 KRYKEVIALFHDVID-KGMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQGFD-LDVY 275
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ + LID YAKCG I AL +F ++ KNL W II G A HG +EA+ F M++
Sbjct: 276 IGSSLIDMYAKCGSIDMALLVF--YKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEMER 333
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++PN VTF+S+L AC+H G +EEG ++F MV++ + P ++HYGC++D+L +AG LE
Sbjct: 334 KRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVDLLSKAGLLE 393
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A ++ + E N +W LL C H N+E+ + ++ +E G Y L+ N+
Sbjct: 394 DALEMIRNMTVE-PNSFIWGALLNGCKLHKNLEIAHIAVQNLMVLEPSNSGHYSLLVNMY 452
Query: 302 AGVWRYGDAERLRRVVDERNALK-FPGRSLV 331
A R+ + ++R + + K PG S V
Sbjct: 453 AEENRWNEVAKIRTTMKDLGVEKRCPGSSWV 483
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 190/332 (57%), Gaps = 10/332 (3%)
Query: 2 LKDGSKLFDELPERNLVT----WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDG 57
LK G + D + E NL T N + K G ++ A +F M ++V+SW +I G
Sbjct: 470 LKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGG 529
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
YT+ + N AL LF M ++P T+ + PA + + IHGY + G++
Sbjct: 530 YTKNSLPNEALTLFAEMQ--RESKPDGTTVACILPACASLAALDKGREIHGYALRNGYSE 587
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
+V+N ++D Y KCG + A LF+ I K+LVSWT +I+G+ MHG G EA+ F
Sbjct: 588 -DKYVTNAVVDMYVKCGLLVLARSLFDMIP--NKDLVSWTVMIAGYGMHGYGSEAINTFN 644
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
+M+ ++P+ V+F+S+L ACSH GL++EG K F+ M +EC++ P+++HY C++D+L R
Sbjct: 645 QMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLART 704
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297
G L +A K +P + + +W LL C H +V++ E+V +I E+E G YVL+
Sbjct: 705 GNLVKAHKFIKAMPIK-PDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLL 763
Query: 298 YNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
NI A ++ + ++LR+ + +R K PG S
Sbjct: 764 ANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCS 795
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 131/251 (52%), Gaps = 10/251 (3%)
Query: 19 TWNVMITGLVKW----GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
++N ++ L+ + ++ A+ LF+E+ R+V+SW +I GY + + + +F +M
Sbjct: 284 SYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKM 343
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
+ + T++ VF A G + +++H Y K + +N L+D Y+KCG
Sbjct: 344 LVFG-VDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCG 402
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
+ SA+++FE ++ K +VSWTS+I+G+ G+ A++ F+ M+ + P+ S+
Sbjct: 403 DLNSAIRVFE--RMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSI 460
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
LNAC+ G ++ G K + E + + L DM + G ++ A V S + +
Sbjct: 461 LNACAINGNLKSG-KIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKK- 518
Query: 255 TNVVVWRTLLG 265
+V+ W T++G
Sbjct: 519 -DVISWNTMIG 528
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 120/252 (47%), Gaps = 15/252 (5%)
Query: 22 VMITGL---------VKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFR 72
VMI G+ VK G+L+ R +F+++ + W +I Y+ ++ LF+
Sbjct: 181 VMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFK 240
Query: 73 RMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK 132
+M+ +P+ T ++ V + +HG K GFN+++ V N LI Y
Sbjct: 241 QMLELG-IKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNT-VVNSLISFYFV 298
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
+ A KLF++++ ++++SW S+ISG+ +G+ +E F +M + + T +
Sbjct: 299 GRKVRCAQKLFDELT--DRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMV 356
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
+V AC++ G + G ++ + +++ L+DM + G L A +V +
Sbjct: 357 NVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDE 416
Query: 253 EITNVVVWRTLL 264
+ VV W +++
Sbjct: 417 K--TVVSWTSMI 426
>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 577
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 124/362 (34%), Positives = 203/362 (56%), Gaps = 35/362 (9%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
++++ LFD + ERN +WN MIT K G++ AR +F+ P ++VVSW IIDGY +
Sbjct: 91 YVEEARNLFDNMTERNSCSWNSMITCYCKLGDINSARLMFDCNPVKDVVSWNAIIDGYCK 150
Query: 61 MNRSNGALALFRRM----------------VAC---------------EYTEPSEITILA 89
+ A LF M V C E +P+E+T+++
Sbjct: 151 SKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVS 210
Query: 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE 149
+ A G + + IHGY + + + N LID Y KCG + +A+ +F +S
Sbjct: 211 LLSACAHLGALDMGEWIHGYIRTKRLK-IDVVLGNALIDMYCKCGALEAAIDVFHGLS-- 267
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
RKN+ W SII G M+G G+EA+ F M+K +KP+ VTF+ +L+ CSH GL+ G +
Sbjct: 268 RKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQR 327
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
+F +M+ + P ++HYGC++D+LGRAG L++A ++ +P + N +V +LL AC
Sbjct: 328 YFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMK-PNSMVLGSLLRACQI 386
Query: 270 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
H + ++GE+VT+++LE++ GG+YV + N+ A + R+ D R+++ +R K PG S
Sbjct: 387 HKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCS 446
Query: 330 LV 331
+
Sbjct: 447 SI 448
>gi|297834808|ref|XP_002885286.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331126|gb|EFH61545.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 471
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 124/318 (38%), Positives = 186/318 (58%), Gaps = 17/318 (5%)
Query: 28 VKWGELEYARSLFEEMPCRNVVSWTGIIDGY-TRMNRSN----GALALFRRMVAC-EYTE 81
K G+L YAR +F+EMP R V+W +I GY + ++ N A+ LFRR C
Sbjct: 157 AKNGDLRYARKVFDEMPERTSVTWNAMIGGYCSHKDKGNHNARKAMILFRRFSCCGSGVR 216
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA-FHIHVSNCLIDTYAKCGCIFSAL 140
P++ T++ V PAI Q G + L+HGY EK GF + + L+D Y+KCGC+ SA
Sbjct: 217 PTDTTMVCVLPAISQTGLIEIGSLVHGYIEKLGFTPEIDVFIGTGLVDMYSKCGCLNSAF 276
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
+FE + V KN+ +WTS+ +G A+HG G E +RM + +KPN VTF S+L+A H
Sbjct: 277 SVFELMKV--KNVFTWTSMATGLALHGRGNETPNLLDRMAESGIKPNEVTFTSLLSAYRH 334
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
GLV+EG++ F M V P I+HYGC++D+LG+AGR+++A + +P + + ++
Sbjct: 335 IGLVQEGIELFKSMRTRFGVTPVIQHYGCIVDLLGKAGRIQEAYEFVLAMPIK-PDTILL 393
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMER-------GYGGDYVLMYNILAGVWRYGDAERL 313
R+L ACS +G MGE + + +LE+ER DYV + N+LA ++ + E+L
Sbjct: 394 RSLCNACSIYGETAMGEEIGKALLEIEREEEKLSGSECEDYVALSNMLAHKGKWIEVEKL 453
Query: 314 RRVVDERNALKFPGRSLV 331
R + ER PG S V
Sbjct: 454 RNEMKERRIKTRPGFSFV 471
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 8/210 (3%)
Query: 13 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFR 72
PE ++ ++ K G L A S+FE M +NV +WT + G R N L
Sbjct: 252 PEIDVFIGTGLVDMYSKCGCLNSAFSVFELMKVKNVFTWTSMATGLALHGRGNETPNLLD 311
Query: 73 RMVACEYTEPSEITILAVFPAIWQNGDVRN-CQLIHGYGEKRGFNAFHIHVSNCLIDTYA 131
RM A +P+E+T ++ A G V+ +L + G H C++D
Sbjct: 312 RM-AESGIKPNEVTFTSLLSAYRHIGLVQEGIELFKSMRTRFGVTPVIQHY-GCIVDLLG 369
Query: 132 KCGCIFSALKLFEDISVERKNLV--SWTSIISGFAMHGMGKE---AVENFERMQKVVLKP 186
K G I A + + ++ ++ S + S + MG+E A+ ER ++ +
Sbjct: 370 KAGRIQEAYEFVLAMPIKPDTILLRSLCNACSIYGETAMGEEIGKALLEIEREEEKLSGS 429
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVE 216
++++ N +H G E K ++M E
Sbjct: 430 ECEDYVALSNMLAHKGKWIEVEKLRNEMKE 459
>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 629
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 124/358 (34%), Positives = 198/358 (55%), Gaps = 42/358 (11%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+D KLFDE+P+R+L++WN M+ G + E+ A LFE+MP RN VSW+ ++ GY++
Sbjct: 201 LRDARKLFDEMPQRDLISWNTMLDGYARCREMSRAFELFEKMPERNTVSWSTMVMGYSKA 260
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFP--AIWQNGDVRNCQLI------------- 106
A +F +M + I+A + + + D Q++
Sbjct: 261 GDMEMARVMFDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLVDQMVASGLRFDAAAAIS 320
Query: 107 -----------------HGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE 149
H +K N+ + V N L+D YAKCG + A +F D+
Sbjct: 321 ILAACAESGLLSLGMRAHSIIKKSNLNS-NASVLNALLDMYAKCGSLKKAFDVFNDMP-- 377
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
+K+LVSW +++ G +HG GKEA+E F RM+K + P++VTF++VL +C+H GL++EG+
Sbjct: 378 KKDLVSWNTMLHGLGVHGHGKEAIELFSRMRKEGIWPDKVTFIAVLCSCNHAGLIDEGID 437
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
+F M + +++P ++HYGCL+D+LGR GRL++A KV +P E NVV+W LLGAC
Sbjct: 438 YFYSMEKVYDLVPKVEHYGCLVDLLGRGGRLKEAIKVVQTMPME-PNVVIWGALLGACRM 496
Query: 270 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPG 327
H V++ + V +++++ G+Y L+ NI Y AE V D R+ +K G
Sbjct: 497 HNEVDIAKEVLDNLVKLDPSDPGNYTLLSNI------YAAAEDWEGVADIRSKMKSMG 548
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 137/271 (50%), Gaps = 44/271 (16%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D KLF+++ ER+ V+WN M+ GLVK GEL AR LF+EMP R+++SW ++DGY R
Sbjct: 170 VRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARKLFDEMPQRDLISWNTMLDGYARC 229
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ A LF +M P T+ W
Sbjct: 230 REMSRAFELFEKM-------PERNTV------SW-------------------------- 250
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ ++ Y+K G + A +F+ + KN+V+WT II+G+A G+ KEA + ++M
Sbjct: 251 --STMVMGYSKAGDMEMARVMFDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLVDQMVA 308
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
L+ + +S+L AC+ GL+ G++ ++++ + + L+DM + G L+
Sbjct: 309 SGLRFDAAAAISILAACAESGLLSLGMRAH-SIIKKSNLNSNASVLNALLDMYAKCGSLK 367
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
+A V + +P + ++V W T+L HG+
Sbjct: 368 KAFDVFNDMPKK--DLVSWNTMLHGLGVHGH 396
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 60/291 (20%), Positives = 113/291 (38%), Gaps = 60/291 (20%)
Query: 82 PSEITILAVFPAIWQN----GDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIF 137
PS ++ +F Q+ ++ + +H +R + +H++ LI + C
Sbjct: 10 PSWVSSRRIFEERLQDLPKCANLNQVKQLHAQIIRRNLHQ-DLHIAPKLISALSLCRQTN 68
Query: 138 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197
AL++F V+ N+ S+I A++ +A F MQ+ L + T+ +L A
Sbjct: 69 LALRVFN--QVQEPNVHLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKA 126
Query: 198 CSH------------------------------------GGL-VEEGLKFFDKMVEECEV 220
CS GGL V + +K F+KM E
Sbjct: 127 CSGLSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSER--- 183
Query: 221 LPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVT 280
D + ++ L +AG L A K+ +P +++ W T+L + ++
Sbjct: 184 --DTVSWNSMLGGLVKAGELRDARKLFDEMPQR--DLISWNTMLDGYA------RCREMS 233
Query: 281 RKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
R E+ + V ++ G + GD E R + D+ + FP +++V
Sbjct: 234 RAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDK---MPFPAKNVV 281
>gi|224116552|ref|XP_002331925.1| predicted protein [Populus trichocarpa]
gi|222874597|gb|EEF11728.1| predicted protein [Populus trichocarpa]
Length = 530
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 194/330 (58%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+K +F ++ +++ +W ++ G V LE AR +F+EMP RN V+WT +I GY R
Sbjct: 153 IKIAQLVFKQMGIKDVSSWTSLLNGFVMCNGLESARRVFDEMPWRNDVAWTAMITGYVRG 212
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
L +FR+M A +P+ IT +AV G + Q +HGY K + +
Sbjct: 213 GMPIRGLEMFRQMKAEGENQPTVITAVAVLSGCADLGAHDHGQAVHGYISKVNLDK-GVT 271
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VSN L+D Y+K GC+ SA+K+F+ + +K++ SWT++IS + HG G A+E F M +
Sbjct: 272 VSNALMDMYSKGGCVESAMKIFDRLV--KKDVFSWTTMISAHSSHGKGNHALEVFYDMLE 329
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ PN VTFL VL+ CSH GL+ E K F+ M++ P I+HYGC++D+L RAG LE
Sbjct: 330 SGVIPNDVTFLLVLSGCSHSGLLVEANKLFNGMIQCYGFEPKIEHYGCMVDLLCRAGLLE 389
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A+++ +P + + V+WR+LL AC N+ + E +KI+E+E G YVL+ NI
Sbjct: 390 EAKELIDNMPMD-PDAVIWRSLLSACMNQRNLGLAEIAGKKIIELEPHDDGVYVLLSNIY 448
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
R DA ++R+++ ++ +K P S +
Sbjct: 449 HVANRMKDARKMRKMMGDQKVMKKPACSYI 478
>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
Length = 569
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 124/338 (36%), Positives = 202/338 (59%), Gaps = 12/338 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++ ++FDE+ +RN+V+WN ++ G V+ G+++ AR +F+EMP RNVVSWT +I G ++
Sbjct: 186 VRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQI 245
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR---GFNAF 118
R AL LF M + ++ ++A A + GD++ IH Y ++R G
Sbjct: 246 GRCKQALHLFHEMRRAG-VKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPL 304
Query: 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER 178
+ ++N LI YA CG I A K+F I +++++ +SWTS+I+GFA G +EA+ F+
Sbjct: 305 LVSLNNSLIHMYASCGVIDKAYKVF--IGMQQRSTISWTSMITGFAKQGHAEEALGVFQW 362
Query: 179 MQKVVL---KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
MQ++ +P+ +TF+ VL ACSH G V++G FF+ M ++ ++P I+HYGC++D+L
Sbjct: 363 MQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLS 422
Query: 236 RAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRK-ILEMERGYGGDY 294
RAG L++A ++ +P + N VW LLG C H N E+ V +K +LE++ Y
Sbjct: 423 RAGFLDEAHRLXESMPMK-PNDAVWGALLGGCRIHKNAELASHVAQKLVLELKPDQAAGY 481
Query: 295 -VLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
VL+ N+ A R+ D +R+ + E K GRS V
Sbjct: 482 LVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWV 519
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 127/288 (44%), Gaps = 41/288 (14%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
+++ + G L A +FE + + W +I G+++ + + L+ RMV E EP
Sbjct: 72 LLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAE-AEP 130
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF--NAF---------------------- 118
+E T + ++ +R + +HG G+ N F
Sbjct: 131 NEFTYSFLIGGCARSXLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKAR 190
Query: 119 ---------HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 169
+I N L+ Y +CG + A ++F+++ +N+VSWT++I+G A G
Sbjct: 191 RVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMP--ERNVVSWTTMIAGCAQIGRC 248
Query: 170 KEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL---KFFDKMVEECEVLPDIKH 226
K+A+ F M++ +K ++V ++ L+AC+ G ++ G + D+ + +
Sbjct: 249 KQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSL 308
Query: 227 YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
LI M G +++A KV G+ T + W +++ + G+ E
Sbjct: 309 NNSLIHMYASCGVIDKAYKVFIGMQQRST--ISWTSMITGFAKQGHAE 354
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 6/162 (3%)
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
L+ Y G + +A K+FE I E + W +I G + + VE + RM + +
Sbjct: 72 LLSFYITSGNLLNAHKVFERI--ENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAE 129
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN T+ ++ C+ L+ EG + ++V ++ L+++ AG + K
Sbjct: 130 PNEFTYSFLIGGCARSXLLREGEQVHGRVVAN-GYCTNVFVRTSLVNLYAIAGGYDGVRK 188
Query: 246 VASGIPSEIT--NVVVWRTLLGACSFHGNVEMGERVTRKILE 285
A + EI N+V W +LL G+V+ R+ ++ E
Sbjct: 189 -ARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPE 229
>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
Length = 644
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 113/311 (36%), Positives = 189/311 (60%), Gaps = 5/311 (1%)
Query: 9 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGAL 68
FD +P +N V+W M+ L K ++ AR FE++P ++++SW +I Y + R + AL
Sbjct: 269 FDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEAL 328
Query: 69 ALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLID 128
L+ RM P E T+ AV A Q GD+ + ++IH + F+ + + N L+D
Sbjct: 329 DLYNRMKLLGLA-PDEFTLAAVLSACGQLGDLASGKMIHDC-IRDNFHNPGVALFNSLLD 386
Query: 129 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR 188
YA+CG + +A+ LF ++ KN++SW +II AMHG ++A+ F M P+
Sbjct: 387 MYARCGQVDTAISLFSEMP--SKNVISWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDE 444
Query: 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
+TF+++L+AC+HGGL+E G +F M V P ++HY C++D+LGR G+L +A +
Sbjct: 445 ITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIK 504
Query: 249 GIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
+P +VVVW LLGAC HG++++G++V +++LE+E GG +VL+ N+L ++
Sbjct: 505 DMPMR-PDVVVWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVLISNMLYETHQWE 563
Query: 309 DAERLRRVVDE 319
D +RLR+++ E
Sbjct: 564 DMKRLRKLMRE 574
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 134/287 (46%), Gaps = 42/287 (14%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ G L +R F+EM RNVVSW +I+GY + + A +LF M +
Sbjct: 149 NALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRR-QGL 207
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
E T++++ A G++ +L+H + RG + ++N L+D Y KCG + A
Sbjct: 208 LADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCR-IDLILANALVDMYGKCGDLLMAH 266
Query: 141 KLFEDI-----------------------------SVERKNLVSWTSIISGFAMHGMGKE 171
F+ + + K+++SW ++IS + G E
Sbjct: 267 TCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHE 326
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVL----PDIKHY 227
A++ + RM+ + L P+ T +VL+AC G + G KM+ +C P + +
Sbjct: 327 ALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASG-----KMIHDCIRDNFHNPGVALF 381
Query: 228 GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
L+DM R G+++ A + S +PS+ NV+ W ++GA + HG +
Sbjct: 382 NSLLDMYARCGQVDTAISLFSEMPSK--NVISWNAIIGALAMHGRAQ 426
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 145/319 (45%), Gaps = 22/319 (6%)
Query: 10 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALA 69
D++ + L ++ + G W YAR LF+ +P + + +I Y + AL
Sbjct: 41 DDVTSQILASYCALPAGGGVW----YARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALP 96
Query: 70 LFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDT 129
L R M+ P+E T+ + A + + + HG K GF + V N L+ +
Sbjct: 97 LLRGMIR-RGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVG-QVFVGNALLHS 154
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
YA G + + + F+++ V+R N+VSW S+I+G+A G +EA FE M++ L +
Sbjct: 155 YASAGSLGDSRRFFDEM-VDR-NVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEF 212
Query: 190 TFLSVLNACSHGGLVEEG-LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
T +S+L ACS G +E G L +V C + D+ L+DM G+ G L A
Sbjct: 213 TLVSLLFACSAEGNLEFGKLVHSHLLVRGCRI--DLILANALVDMYGKCGDLLMAHTCFD 270
Query: 249 GIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
+P N V W ++L A + +++ +I E ++ +N + + G
Sbjct: 271 MMP--FKNAVSWTSMLCALAKRASIDAARDWFEQIPEKS-------IISWNAMISCYVQG 321
Query: 309 DAERLRRVVDERNALKFPG 327
R +D N +K G
Sbjct: 322 G--RFHEALDLYNRMKLLG 338
>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 725
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 116/325 (35%), Positives = 188/325 (57%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+ F ++ RNL M++G K G L+ AR +F++ +++V WT +I Y +
Sbjct: 271 EFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQE 330
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL +F M C +P +T+L+V A G + + +H Y G + + + N L
Sbjct: 331 ALRVFEEM-CCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESV-LPIDNAL 388
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
I+ YAKCG + +A +FE + +N+VSW+S+I+ FAMHG +++ F +M++ ++P
Sbjct: 389 INMYAKCGGLDAARDVFEKMPT--RNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEP 446
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N VTF+ VL CSH GLVEEG K F M +E + P I+HYGC++D+ GRA L +A +V
Sbjct: 447 NEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEV 506
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P NVV+W +L+ AC HG +E+GE ++IL++E + G VLM NI A +R
Sbjct: 507 IESMPMA-PNVVIWGSLMSACRVHGELELGELAAKRILKLEPDHDGALVLMSNIYAREYR 565
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ +R +++++ K G S +
Sbjct: 566 WDYVRIIRWIMEKKKVFKEKGLSRI 590
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 126/270 (46%), Gaps = 34/270 (12%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G + YAR++F+EM R+VV+W +I+ Y R + A LF M P E+ + +
Sbjct: 163 GRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVM-PDEMILCNI 221
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV-- 148
A + G++R + I+ + + H+ L+ YA GC+ A++ F +SV
Sbjct: 222 VSACGRTGNMRYNRAIYDFLIENDVR-MDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRN 280
Query: 149 ---------------------------ERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
E K+LV WT++IS +A +EA+ FE M
Sbjct: 281 LFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCC 340
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KP+ VT LSV++AC + G +++ K+ + + + LI+M + G L+
Sbjct: 341 SGIKPDVVTMLSVISACVNLGTLDKA-KWVHRYTHLNGLESVLPIDNALINMYAKCGGLD 399
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHG 271
A V +P+ NVV W +++ A + HG
Sbjct: 400 AARDVFEKMPTR--NVVSWSSMINAFAMHG 427
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 96/212 (45%), Gaps = 10/212 (4%)
Query: 35 YARSLFEEM-PCRNVVSWTGIIDGYTRMNRSNGALALFRRM--VACEYTEPSEITILAVF 91
YA +LF + P + + ++ +R + ++R+ V + I+ +
Sbjct: 65 YALNLFSSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRF---DRISFPPIL 121
Query: 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151
A+ + + +HG+ K V L+D YA CG I A +F+++S ++
Sbjct: 122 KAVSKVSALFEGMELHGFAFKIA-TLSDPFVETGLMDMYAACGRINYARNVFDEMS--QR 178
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
++V+W ++I + G+ EA + FE M+ + P+ + ++++AC G + +
Sbjct: 179 DVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIY 238
Query: 212 DKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
D ++E +V D L+ M AG ++ A
Sbjct: 239 DFLIEN-DVRMDTHLLTALVTMYAGAGCMDMA 269
>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 535
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 115/331 (34%), Positives = 192/331 (58%), Gaps = 4/331 (1%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
+++ LFDE+ ERN+ +WN MI+G G ++ AR +F+ MP ++VVSW ++ Y
Sbjct: 191 LVEEARALFDEMEERNVESWNFMISGYAAAGLVKEAREVFDSMPVKDVVSWNAMVTAYAH 250
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+ N L +F M+ P T++ V A G + + +H Y +K G
Sbjct: 251 VGCYNEVLEVFNMMLDDSAERPDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIE-IEG 309
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V+ L+D Y+KCG I AL++F D S ++++ +W SII+G ++HG+GK+A+E F M
Sbjct: 310 FVATALVDMYSKCGKIDKALEVFRDTS--KRDVSTWNSIITGLSVHGLGKDALEIFSEMV 367
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
KPN +TF+ VL+AC+H GL+++ K F+ M + P I+HYGC++D+LGR G+
Sbjct: 368 YEGFKPNGITFIGVLSACNHVGLLDQARKLFEMMNSVYGIEPTIEHYGCMVDLLGRMGKF 427
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+AE++ + +P++ ++++ +LLGAC G +E ER+ ++LE YV M N+
Sbjct: 428 EEAEELVNEVPADEASILL-ESLLGACKRFGKLEQAERIANRLLESNPRESSGYVQMSNL 486
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ +A +R + K PG S++
Sbjct: 487 YASHGRWDEAMEVRGKMRAERVKKNPGCSMI 517
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/365 (20%), Positives = 137/365 (37%), Gaps = 94/365 (25%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
+ YA S+ + N + +I Y + AL +FR M+ + VFP
Sbjct: 60 VSYAHSILNRIESPNGFTHNSVIRAYANSSTPEIALTVFREML-----------LGPVFP 108
Query: 93 AIWQNGDV-RNCQLIHGYGEKRGFNAF--------HIHVSNCLIDTYAKCGCIFSALKLF 143
+ V + C G+ E R + + V N LI+ Y + G A K+
Sbjct: 109 DKYSFTFVLKACAAFCGFEEGRQIHGLFMKSDLVTDVFVENTLINVYGRSGYFEIARKVL 168
Query: 144 EDISV-----------------------------ERKNLVSWTSIISGFAMHGMGKEAVE 174
+ + V E +N+ SW +ISG+A G+ KEA E
Sbjct: 169 DRMPVRDAVSWNSLLSAYLDKGLVEEARALFDEMEERNVESWNFMISGYAAAGLVKEARE 228
Query: 175 NFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD----------- 223
F+ M + V++ +++ A +H G E L+ F+ M+++ PD
Sbjct: 229 VFDSMP----VKDVVSWNAMVTAYAHVGCYNEVLEVFNMMLDDSAERPDGFTLVNVLSAC 284
Query: 224 ---------------IKHYG---------CLIDMLGRAGRLEQAEKVASGIPSEITNVVV 259
I +G L+DM + G++++A +V +V
Sbjct: 285 ASLGSLSQGEWVHVYIDKHGIEIEGFVATALVDMYSKCGKIDKALEVFRDTSKR--DVST 342
Query: 260 WRTLLGACSFHGNVEMGERVTRKILEM-ERGYGGDYVLMYNILAGVWRYGDAERLRRVVD 318
W +++ S HG +G+ EM G+ + + +L+ G ++ R++ +
Sbjct: 343 WNSIITGLSVHG---LGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGLLDQARKLFE 399
Query: 319 ERNAL 323
N++
Sbjct: 400 MMNSV 404
>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
Length = 671
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 191/310 (61%), Gaps = 6/310 (1%)
Query: 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTE 81
+I + G++ AR +F+ M VVS+ +I R + AL LFR M A + +
Sbjct: 178 TLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQA-KGLK 236
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
P+ +T+++V A G + + IH Y K ++ + V+ LID YAKCG + A+
Sbjct: 237 PTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSL-VKVNTALIDMYAKCGSLEDAIG 295
Query: 142 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHG 201
+F+D+ E ++ +W+ ++ +A HG G+EA+ FE M+K +KP+ VTFL VL ACSH
Sbjct: 296 VFQDM--ESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHS 353
Query: 202 GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWR 261
G+V EGL++FD M E ++ IKHYGC+ D+L R+G+LE+A K +P + T ++WR
Sbjct: 354 GMVSEGLQYFDSM-REYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPT-AILWR 411
Query: 262 TLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321
TLL AC+ HG+V+MG+RV +ILE++ +GGDYV+ N+ A R+ + +R+++ E+
Sbjct: 412 TLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKG 471
Query: 322 ALKFPGRSLV 331
+K PG S +
Sbjct: 472 VVKVPGCSSI 481
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 112/246 (45%), Gaps = 12/246 (4%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGII-----DGYTRMNRSNGALALFRRMVACEYTEPSEI 85
L YAR +F+ +P V W + G + A +F RM+ E P
Sbjct: 81 AHLAYARQVFDRIPHPGDVIWYNTLLRGYARGGGGGGGAEEAARVFVRMME-EGVAPDTY 139
Query: 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFED 145
T +++ A + HG K G A H +V+ LI+ YA+CG + +A +F+
Sbjct: 140 TFVSLLKACASARAGEEGRQAHGVAVKAG-AAEHEYVAPTLINMYAECGDVRAARVMFDR 198
Query: 146 ISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVE 205
+ E +VS+ ++I+ + EA+ F MQ LKP VT +SVL+AC+ G +E
Sbjct: 199 MDGE--CVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALE 256
Query: 206 EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
G ++ + + + +K LIDM + G LE A V + S + W ++
Sbjct: 257 LG-RWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESR--DKQAWSVMMV 313
Query: 266 ACSFHG 271
A + HG
Sbjct: 314 AYANHG 319
>gi|347954490|gb|AEP33745.1| chloroplast biogenesis 19, partial [Arabis hirsuta]
Length = 435
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 189/325 (58%), Gaps = 6/325 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FD + E+N VTWN MI G ++ G+++ A LF+EMP R+++SWT +I+G+ + A
Sbjct: 74 VFDYMEEKNSVTWNTMIDGYMRNGQVDDAVKLFDEMPERDLISWTAMINGFVKKGFHEEA 133
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
LA FR M +P + I+A A G + IH Y + F ++ VSN LI
Sbjct: 134 LAWFREM-QISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVVSQDFKN-NVRVSNSLI 191
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y +CGC+ A ++F+ + E++ +VSW S+I GFA +G E++ F +MQ+ KPN
Sbjct: 192 DLYCRCGCVEFARQVFDKM--EKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEEGFKPN 249
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
VTF L AC+H GLVEEGL++F M + + P I+HYGCL+D+ RAGRLE A KV
Sbjct: 250 AVTFTGALAACNHVGLVEEGLRYFQSMKRDYRISPRIEHYGCLVDLYSRAGRLEDALKVV 309
Query: 248 SGIPSEITNVVVWRTLLGACSFHG-NVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P + N VV +LL AC G N + ERV + + ++ +YV++ N+ A +
Sbjct: 310 QSMPMK-PNEVVIGSLLAACRTQGNNTVLAERVMKHLSDLNVKSHSNYVILSNMYAADGK 368
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ A ++RR + K PG S +
Sbjct: 369 WEGASKMRRKMKGLGLKKEPGFSSI 393
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 117/265 (44%), Gaps = 42/265 (15%)
Query: 81 EPSEITILAVFPAIWQN---GDVRNCQLIHGYGEKRGFNAFHIHVS-------------- 123
EP+ IT +A+ W + G L+HGY K G + H+ V
Sbjct: 11 EPNHITFIALLSG-WGDLLSGSEALGDLLHGYACKLGLDRAHVMVGTAILGMYSKRGRFR 69
Query: 124 -----------------NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 166
N +ID Y + G + A+KLF+++ ++L+SWT++I+GF
Sbjct: 70 KARLVFDYMEEKNSVTWNTMIDGYMRNGQVDDAVKLFDEMP--ERDLISWTAMINGFVKK 127
Query: 167 GMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH 226
G +EA+ F MQ +KP+ V ++ L AC++ G + GL + + V + +++
Sbjct: 128 GFHEEALAWFREMQISGVKPDYVAIIAALAACTNLGALSFGL-WIHRYVVSQDFKNNVRV 186
Query: 227 YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM 286
LID+ R G +E A +V + E VV W +++ + +G+ RK+
Sbjct: 187 SNSLIDLYCRCGCVEFARQVFDKM--EKRTVVSWNSVIVGFAANGHAHESLVYFRKM--Q 242
Query: 287 ERGYGGDYVLMYNILAGVWRYGDAE 311
E G+ + V LA G E
Sbjct: 243 EEGFKPNAVTFTGALAACNHVGLVE 267
>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 595
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 117/302 (38%), Positives = 192/302 (63%), Gaps = 6/302 (1%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G++ A +F++MP +++V+W +I+G+ + ALAL+ M + +P TI+++
Sbjct: 170 GDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEM-DLKGIKPDGFTIVSL 228
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A + G + + H Y K G ++H SN L+D YA+CG + A LF+++
Sbjct: 229 LSACAKIGALTLGKRFHVYMIKVGLTR-NLHSSNVLLDLYARCGRVEEAKTLFDEMV--D 285
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQ-KVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
KN VSWTS+I G A++G+GKEA+E F+ M+ K L P +TF+ +L ACSH G+V+EG +
Sbjct: 286 KNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFE 345
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
+F +M EE ++ P I+H+GC++D+L RAG++++A + +P + NVV+WRTLLGAC+
Sbjct: 346 YFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQ-PNVVIWRTLLGACTV 404
Query: 270 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
HG+ ++ E KIL++E + GDYVL+ N+ A R+ D +++R+ + K PG S
Sbjct: 405 HGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHS 464
Query: 330 LV 331
LV
Sbjct: 465 LV 466
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 142/272 (52%), Gaps = 12/272 (4%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFE--EMPCRNVVSWTGIIDGYT 59
+++G + D ++L+ + + L + YA +F E P NV W +I GY
Sbjct: 41 IRNGVSISDAELGKHLIFY---LVSLPSPPPMSYAHKVFSKIEKPI-NVFIWNTLIRGYA 96
Query: 60 RMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
+ S A++L+R M A + EP T + A+ + DVR + IH + GF +
Sbjct: 97 EIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSVVIRSGFGSL- 155
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
I+V N L+ YA CG + SA K+F+ + K+LV+W S+I+GFA +G +EA+ + M
Sbjct: 156 IYVQNSLLHLYANCGDVASAYKVFDKMP--EKDLVAWNSVINGFAENGKPEEALALYTEM 213
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+KP+ T +S+L+AC+ G + G +F M+ + + ++ L+D+ R GR
Sbjct: 214 DLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMI-KVGLTRNLHSSNVLLDLYARCGR 272
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+E+A+ + + + N V W +L+ + +G
Sbjct: 273 VEEAKTLFDEMVDK--NSVSWTSLIVGLAVNG 302
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 25/185 (13%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
RNL + NV++ + G +E A++LF+EM +N VSWT +I G A+ LF+ M
Sbjct: 255 RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNM 314
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF-----------HIHVS 123
+ E P EIT + + A G V K GF F I
Sbjct: 315 ESKEGLLPCEITFVGILYACSHCGMV-----------KEGFEYFRRMSEEYKIEPRIEHF 363
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
C++D A+ G + A + + ++ N+V W +++ +HG A RM+ +
Sbjct: 364 GCMVDLLARAGQVKKAYEYILKMPMQ-PNVVIWRTLLGACTVHGDSDLA--ELARMKILQ 420
Query: 184 LKPNR 188
L+PN
Sbjct: 421 LEPNH 425
>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 553
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 124/338 (36%), Positives = 202/338 (59%), Gaps = 12/338 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++ ++FDE+ +RN+V+WN ++ G V+ G+++ AR +F+EMP RNVVSWT +I G ++
Sbjct: 170 VRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQI 229
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR---GFNAF 118
R AL LF M + ++ ++A A + GD++ IH Y ++R G
Sbjct: 230 GRCKQALHLFHEMRRAG-VKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPL 288
Query: 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER 178
+ ++N LI YA CG I A K+F I +++++ +SWTS+I+GFA G +EA+ F+
Sbjct: 289 LVSLNNSLIHMYASCGVIDKAYKVF--IGMQQRSTISWTSMITGFAKQGHAEEALGVFQW 346
Query: 179 MQKVVL---KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
MQ++ +P+ +TF+ VL ACSH G V++G FF+ M ++ ++P I+HYGC++D+L
Sbjct: 347 MQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLS 406
Query: 236 RAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI-LEMERGYGGDY 294
RAG L++A ++ +P + N VW LLG C H N E+ V +K+ LE++ Y
Sbjct: 407 RAGFLDEAHRLIESMPMK-PNDAVWGALLGGCRIHKNAELASHVAQKLALELKPDQAAGY 465
Query: 295 -VLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
VL+ N+ A R+ D +R+ + E K GRS V
Sbjct: 466 LVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWV 503
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 127/288 (44%), Gaps = 41/288 (14%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
+++ + G L A +FE + + W +I G+++ + + L+ RMV E EP
Sbjct: 56 LLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAE-AEP 114
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF--NAF---------------------- 118
+E T + ++ +R + +HG G+ N F
Sbjct: 115 NEFTYSFLIGGCARSRLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKAR 174
Query: 119 ---------HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 169
+I N L+ Y +CG + A ++F+++ +N+VSWT++I+G A G
Sbjct: 175 RVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMP--ERNVVSWTTMIAGCAQIGRC 232
Query: 170 KEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL---KFFDKMVEECEVLPDIKH 226
K+A+ F M++ +K ++V ++ L+AC+ G ++ G + D+ + +
Sbjct: 233 KQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSL 292
Query: 227 YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
LI M G +++A KV G+ T + W +++ + G+ E
Sbjct: 293 NNSLIHMYASCGVIDKAYKVFIGMQQRST--ISWTSMITGFAKQGHAE 338
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 6/162 (3%)
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
L+ Y G + +A K+FE I E + W +I G + + VE + RM + +
Sbjct: 56 LLSFYITSGNLLNAHKVFERI--ENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAE 113
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN T+ ++ C+ L+ EG + ++V ++ L+++ AG + K
Sbjct: 114 PNEFTYSFLIGGCARSRLLREGEQVHGRVVAN-GYCTNVFVRTSLVNLYAIAGGYDGVRK 172
Query: 246 VASGIPSEIT--NVVVWRTLLGACSFHGNVEMGERVTRKILE 285
A + EI N+V W +LL G+V+ R+ ++ E
Sbjct: 173 -ARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPE 213
>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
Length = 611
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 191/310 (61%), Gaps = 6/310 (1%)
Query: 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTE 81
+I + G++ AR +F+ M VVS+ +I R + AL LFR M A + +
Sbjct: 178 TLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQA-KGLK 236
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
P+ +T+++V A G + + IH Y K ++ + V+ LID YAKCG + A+
Sbjct: 237 PTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSL-VKVNTALIDMYAKCGSLEDAIG 295
Query: 142 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHG 201
+F+D+ E ++ +W+ ++ +A HG G+EA+ FE M+K +KP+ VTFL VL ACSH
Sbjct: 296 VFQDM--ESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHS 353
Query: 202 GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWR 261
G+V EGL++FD M E ++ IKHYGC+ D+L R+G+LE+A K +P + T ++WR
Sbjct: 354 GMVSEGLQYFDSM-REYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPT-AILWR 411
Query: 262 TLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321
TLL AC+ HG+V+MG+RV +ILE++ +GGDYV+ N+ A R+ + +R+++ E+
Sbjct: 412 TLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKG 471
Query: 322 ALKFPGRSLV 331
+K PG S +
Sbjct: 472 VVKVPGCSSI 481
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 112/246 (45%), Gaps = 12/246 (4%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGII-----DGYTRMNRSNGALALFRRMVACEYTEPSEI 85
L YAR +F+ +P V W + G + A +F RM+ E P
Sbjct: 81 AHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGGGGGGAEEAARVFVRMME-EGVAPDTY 139
Query: 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFED 145
T +++ A + HG K G A H +V+ LI+ YA+CG + +A +F+
Sbjct: 140 TFVSLLKACASARAGEEGRQAHGVAVKAG-AAEHEYVAPTLINMYAECGDVRAARVMFDR 198
Query: 146 ISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVE 205
+ E +VS+ ++I+ + EA+ F MQ LKP VT +SVL+AC+ G +E
Sbjct: 199 MDGE--CVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALE 256
Query: 206 EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
G ++ + + + +K LIDM + G LE A V + S + W ++
Sbjct: 257 LG-RWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESR--DKQAWSVMMV 313
Query: 266 ACSFHG 271
A + HG
Sbjct: 314 AYANHG 319
>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
Length = 611
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 191/310 (61%), Gaps = 6/310 (1%)
Query: 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTE 81
+I + G++ AR +F+ M VVS+ +I R + AL LFR M A + +
Sbjct: 178 TLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQA-KGLK 236
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
P+ +T+++V A G + + IH Y K ++ + V+ LID YAKCG + A+
Sbjct: 237 PTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSL-VKVNTALIDMYAKCGSLEDAIG 295
Query: 142 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHG 201
+F+D+ E ++ +W+ ++ +A HG G+EA+ FE M+K +KP+ VTFL VL ACSH
Sbjct: 296 VFQDM--ESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHS 353
Query: 202 GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWR 261
G+V EGL++FD M E ++ IKHYGC+ D+L R+G+LE+A K +P + T ++WR
Sbjct: 354 GMVSEGLQYFDSM-REYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPT-AILWR 411
Query: 262 TLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321
TLL AC+ HG+V+MG+RV +ILE++ +GGDYV+ N+ A R+ + +R+++ E+
Sbjct: 412 TLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKG 471
Query: 322 ALKFPGRSLV 331
+K PG S +
Sbjct: 472 VVKVPGCSSI 481
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 115/246 (46%), Gaps = 12/246 (4%)
Query: 31 GELEYARSLFEEMPCRNVVSW-TGIIDGYTRMNR----SNGALALFRRMVACEYTEPSEI 85
L YAR +F+ +P V W ++ GY R + A +F RM+ E P
Sbjct: 81 AHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMME-EGVAPDTY 139
Query: 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFED 145
T +++ A + HG K G A H +V+ LI+ YA+CG + +A +F+
Sbjct: 140 TFVSLLKACASARAGEEGRQAHGVAVKAG-AAEHEYVAPTLINMYAECGDVRAARVMFDR 198
Query: 146 ISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVE 205
+ E +VS+ ++I+ + EA+ F MQ LKP VT +SVL+AC+ G +E
Sbjct: 199 MDGE--CVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALE 256
Query: 206 EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
G ++ + + + +K LIDM + G LE A V + S + W ++
Sbjct: 257 LG-RWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESR--DKQAWSVMMV 313
Query: 266 ACSFHG 271
A + HG
Sbjct: 314 AYANHG 319
>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 185/301 (61%), Gaps = 5/301 (1%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G +E+AR LF+EMP + V+WT +I GY R+ +S GA+ LFR+M P ++T+++V
Sbjct: 159 GGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVC-PDDVTMVSV 217
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A G + + I Y EK + +SN L+D +AKCG + AL LF ++S +
Sbjct: 218 LSACTDLGALELGKWIESYIEKERVLK-TVELSNALVDMFAKCGDVDKALGLFRNMS--K 274
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
+ +VSWTS+I G AMHG G EAV FE M+ + P + F+ +L+ACSH GLVE G ++
Sbjct: 275 RTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQY 334
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
F +M + ++P I+HYGC++D+L RAG + +A + +P E N ++WRTL+ AC H
Sbjct: 335 FSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIE-PNPIIWRTLISACRVH 393
Query: 271 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSL 330
G +++GE ++++++ E + +YVL+ NI + + ++R + ++ K PG ++
Sbjct: 394 GELKLGESISKQLIRNEPMHESNYVLLSNIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTM 453
Query: 331 V 331
+
Sbjct: 454 I 454
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 4/148 (2%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ K G+++ A LF M R +VSWT +I G R A++LF M A
Sbjct: 250 NALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMV 309
Query: 81 EPSEITILAVFPAIWQNGDV-RNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSA 139
P +I + + A +G V R Q + G I C++D ++ G + A
Sbjct: 310 -PEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVP-KIEHYGCMVDLLSRAGLVTEA 367
Query: 140 LKLFEDISVERKNLVSWTSIISGFAMHG 167
L+ E + +E N + W ++IS +HG
Sbjct: 368 LEFVERMPIE-PNPIIWRTLISACRVHG 394
>gi|297724409|ref|NP_001174568.1| Os06g0114366 [Oryza sativa Japonica Group]
gi|218197444|gb|EEC79871.1| hypothetical protein OsI_21372 [Oryza sativa Indica Group]
gi|255676656|dbj|BAH93296.1| Os06g0114366 [Oryza sativa Japonica Group]
Length = 509
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 185/317 (58%), Gaps = 13/317 (4%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCR-NVVSWTGIIDGYTRMNRSNGALALFRRM 74
++V WN ++ K G+ A F MP + NVVSW ++ + R ALALF+ M
Sbjct: 187 DVVAWNALVDMYAKCGDAAAAHRWFRRMPVKKNVVSWNTMMSAFARAGELEEALALFQEM 246
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
A P + T +A A Q G + + +H Y + G +A + V N L+D YAKCG
Sbjct: 247 QAAA-VRPDDATFVAALGACAQLGALDTGRWLHAYMGRMGHSADGV-VGNALLDMYAKCG 304
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
+ A ++F+ ++ R+++ ++TS+I G AMHG G++A+ F MQ+ + PN VT L V
Sbjct: 305 AVDQATEVFDGMA--RRDVYTYTSMILGLAMHGRGEDALSLFAGMQRAGVTPNEVTLLGV 362
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L AC H GLVEEGL+ + M E P I+HYGC++DMLGRAGRL++AE++ + +P
Sbjct: 363 LTACCHAGLVEEGLQQLNAMPE-----PRIEHYGCVVDMLGRAGRLDKAEELIAAMPVH- 416
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLR 314
++ ++W +LL AC HG+VE ERV R+ + GDYVLM N A R+G+A ++R
Sbjct: 417 SDALIWSSLLAACRAHGDVERAERVMRR--RVADADAGDYVLMSNTYASNGRHGEAVKVR 474
Query: 315 RVVDERNALKFPGRSLV 331
+ K PG SL+
Sbjct: 475 GQMRRNEIDKVPGCSLI 491
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 6/155 (3%)
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-- 179
V + L++ Y G + SA L + R ++VS T++++G A HG EAV F M
Sbjct: 87 VRDGLVELYLARGELASARALVDGFPAGR-DVVSCTAMVTGHARHGFLDEAVVLFFAMAD 145
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+ V + G L + + V E +V D+ + L+DM + G
Sbjct: 146 DRCVAIDAVAAAAAFSACAQIGDLALG--REAHRRVAERKVAMDVVAWNALVDMYAKCGD 203
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
A + +P + NVV W T++ A + G +E
Sbjct: 204 AAAAHRWFRRMPVK-KNVVSWNTMMSAFARAGELE 237
>gi|225450622|ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190
[Vitis vinifera]
Length = 485
Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 117/330 (35%), Positives = 193/330 (58%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D K+FDE+ +R+++ WN+MI G K G++E LF +M R+VVSW +I G +
Sbjct: 158 MEDAKKVFDEMLDRDVIVWNMMIRGFCKVGDIEMGFRLFRQMRDRSVVSWNSMIAGLEQS 217
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R AL LFR M + EP + T++ + P + G V + IH Y E I
Sbjct: 218 GRDGEALELFREMWDHGF-EPDDATVVTILPVCARLGAVDVGEWIHSYAESSRLLRDFIS 276
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N L+D Y KCG + +A ++F ++ +KN+VSW ++ISG +G G+ + FE M
Sbjct: 277 VGNSLVDFYCKCGILETAWRVFNEMP--QKNVVSWNAMISGLTFNGKGELGADLFEEMIN 334
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++PN TF+ VL+ C+H GLVE G F M + ++ P ++H+GC++D+L R G +E
Sbjct: 335 KGVRPNDATFVGVLSCCAHAGLVERGRNLFTSMTVDHKMEPKLEHFGCMVDLLARNGCME 394
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + +P N V+W +LL A G+V+ E ++++E+E G+YVL+ N+
Sbjct: 395 EARDLVRTMPMR-PNAVLWGSLLSAYRTIGDVKHAECAVKELIELEPWNSGNYVLLSNVY 453
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ + E++R ++ E+N K PG+S+V
Sbjct: 454 AEDGKWDEVEKVRALMKEKNIRKNPGQSMV 483
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 134/315 (42%), Gaps = 37/315 (11%)
Query: 32 ELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVF 91
++ YA +F + N++ + +I GY+ S +L LF +M P E T +
Sbjct: 56 KMGYANLVFHQTQNPNLLLFNSMIKGYSLCGPSENSLLLFSQM-KNRGIWPDEFTFAPLL 114
Query: 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI----- 146
+ D R + +HG GF F + +ID Y CG + A K+F+++
Sbjct: 115 KSCSGICDNRIGKGVHGVVIVVGFERFS-SIRIGIIDLYTSCGRMEDAKKVFDEMLDRDV 173
Query: 147 ------------------------SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
+ +++VSW S+I+G G EA+E F M
Sbjct: 174 IVWNMMIRGFCKVGDIEMGFRLFRQMRDRSVVSWNSMIAGLEQSGRDGEALELFREMWDH 233
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG-CLIDMLGRAGRLE 241
+P+ T +++L C+ G V+ G ++ E +L D G L+D + G LE
Sbjct: 234 GFEPDDATVVTILPVCARLGAVDVG-EWIHSYAESSRLLRDFISVGNSLVDFYCKCGILE 292
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A +V + +P + NVV W ++ +F+G E+G + +++ +G + +L
Sbjct: 293 TAWRVFNEMPQK--NVVSWNAMISGLTFNGKGELGADLFEEMI--NKGVRPNDATFVGVL 348
Query: 302 AGVWRYGDAERLRRV 316
+ G ER R +
Sbjct: 349 SCCAHAGLVERGRNL 363
>gi|357462223|ref|XP_003601393.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|358344321|ref|XP_003636238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490441|gb|AES71644.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502173|gb|AES83376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 486
Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 193/316 (61%), Gaps = 5/316 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
++V+W+ ++ K GEL+ AR +F+ MP R+VVSWT ++ Y++ R + L LF+ M
Sbjct: 174 DIVSWSGLLVAHAKAGELDVARKVFDGMPERDVVSWTIMLSAYSKAKRPHETLDLFQEMR 233
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
P E+T+L+V A + GD +++H + E+ GF + + + N LID Y KCGC
Sbjct: 234 LAG-VWPDEVTVLSVISACAELGDAEMGRMVHKFVEENGFG-WMVALCNSLIDMYGKCGC 291
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ A ++F+ +RK+L++W +++ A HG ++A FE M + P+ VT L++L
Sbjct: 292 LEEAWQVFD--RTKRKSLITWNAMMMVCANHGYAEDAFRLFEGMIGSGVVPDGVTILALL 349
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
A +H G V+EG++ F+ M + V P I+HYG ++DMLGR+GRL++A + + +P +
Sbjct: 350 VAYAHKGFVDEGIRLFESMQRDYGVEPRIEHYGAVVDMLGRSGRLQEAYNLLTSMPIP-S 408
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
N V+W LLGAC HG+V MGERV +K+LE++ GG Y+L+ +I R +A +R+
Sbjct: 409 NDVIWGALLGACRIHGDVGMGERVIKKLLELKPDEGGYYILLRDIYVAAGRTAEANEMRQ 468
Query: 316 VVDERNALKFPGRSLV 331
+ A K PG S V
Sbjct: 469 AMLASGARKNPGCSWV 484
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 126/283 (44%), Gaps = 40/283 (14%)
Query: 30 WGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILA 89
+G+L YA ++F++MP + +I ++ + + F RM P E +
Sbjct: 54 FGDLSYAHNMFDQMPQPTTFFYNTLIRAHSHSTTPSFSSLFFNRMRR-NSIAPDEFSFTF 112
Query: 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFED---- 145
+ + ++ + IHG K GF H+HV N LI YA G SA K+FED
Sbjct: 113 LLKS--RSFTMPLVHDIHGAVFKFGF-CRHLHVQNALIHLYAVGGVTISARKVFEDAVRV 169
Query: 146 ---------------------ISVERK--------NLVSWTSIISGFAMHGMGKEAVENF 176
+ V RK ++VSWT ++S ++ E ++ F
Sbjct: 170 GLDVDIVSWSGLLVAHAKAGELDVARKVFDGMPERDVVSWTIMLSAYSKAKRPHETLDLF 229
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
+ M+ + P+ VT LSV++AC+ G E G + K VEE + LIDM G+
Sbjct: 230 QEMRLAGVWPDEVTVLSVISACAELGDAEMG-RMVHKFVEENGFGWMVALCNSLIDMYGK 288
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERV 279
G LE+A +V ++ +++ W ++ C+ HG E R+
Sbjct: 289 CGCLEEAWQVFD--RTKRKSLITWNAMMMVCANHGYAEDAFRL 329
>gi|297733949|emb|CBI15196.3| unnamed protein product [Vitis vinifera]
Length = 467
Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 124/338 (36%), Positives = 202/338 (59%), Gaps = 12/338 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++ ++FDE+ +RN+V+WN ++ G V+ G+++ AR +F+EMP RNVVSWT +I G ++
Sbjct: 84 VRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQI 143
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR---GFNAF 118
R AL LF M + ++ ++A A + GD++ IH Y ++R G
Sbjct: 144 GRCKQALHLFHEMRRAG-VKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPL 202
Query: 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER 178
+ ++N LI YA CG I A K+F I +++++ +SWTS+I+GFA G +EA+ F+
Sbjct: 203 LVSLNNSLIHMYASCGVIDKAYKVF--IGMQQRSTISWTSMITGFAKQGHAEEALGVFQW 260
Query: 179 MQKVVL---KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
MQ++ +P+ +TF+ VL ACSH G V++G FF+ M ++ ++P I+HYGC++D+L
Sbjct: 261 MQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLS 320
Query: 236 RAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI-LEMERGYGGDY 294
RAG L++A ++ +P + N VW LLG C H N E+ V +K+ LE++ Y
Sbjct: 321 RAGFLDEAHRLIESMPMK-PNDAVWGALLGGCRIHKNAELASHVAQKLALELKPDQAAGY 379
Query: 295 -VLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
VL+ N+ A R+ D +R+ + E K GRS V
Sbjct: 380 LVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWV 417
>gi|297734524|emb|CBI15771.3| unnamed protein product [Vitis vinifera]
Length = 436
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 194/327 (59%), Gaps = 8/327 (2%)
Query: 8 LFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 65
+FD LP R++V+WN MI+G ++ E A +F+ +P RN V WT +I GY + +
Sbjct: 67 VFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAGYAQSDLFK 126
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
A+ LFR M + + TI V A G + + IH Y E+ ++ N
Sbjct: 127 EAIELFREMQIGGFAADAA-TIACVLSACGHWGALAQGRWIHLYCERNSIE-MDLNARNA 184
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV-L 184
LI Y+KCG I AL++F ++ + ++ SW+++ISG AM+G +A+ F +M+ + +
Sbjct: 185 LIGMYSKCGDIQKALEIFHGLT--QPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDI 242
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
+PN +TFL VL AC+HGG V++GL +F+ M + + P I+HYGC++D+LGRA L +AE
Sbjct: 243 RPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAE 302
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
K +P + +VV+WR+LL AC HGN+E+ E ++I E+E G VL+ N+ A
Sbjct: 303 KFIRTLPIQ-PDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYASA 361
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
R+GD +R+R+ + + K PG S V
Sbjct: 362 SRWGDVKRVRKDMATQRIKKQPGCSFV 388
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 82/197 (41%), Gaps = 35/197 (17%)
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS---- 161
IH K G + + V N LI ++ CG + +A +F+ + +++VSW S+IS
Sbjct: 32 IHSSTLKLGVH-LDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQ 90
Query: 162 ---------------------------GFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
G+A + KEA+E F MQ + T V
Sbjct: 91 SHRYELALKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACV 150
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L+AC H G + +G ++ E + D+ LI M + G +++A ++ G+
Sbjct: 151 LSACGHWGALAQG-RWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQ-- 207
Query: 255 TNVVVWRTLLGACSFHG 271
++ W ++ + +G
Sbjct: 208 PDIFSWSAVISGLAMNG 224
>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/330 (37%), Positives = 191/330 (57%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ +LFD R++VTW +I G K G++ AR LF+EMP +N VSW+ +I GY ++
Sbjct: 139 MDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQI 198
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL LF M + P+ I+ A G + + IH Y ++ I
Sbjct: 199 GLFREALELFNDMQIAGF-RPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRI- 256
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LID YAKCGC+ +A ++F+++ +++ ++TS+ISG A HG A+E F RMQ
Sbjct: 257 LGTALIDMYAKCGCVETACRVFDEML--DRDVFAFTSLISGLANHGHSATAIEMFTRMQN 314
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ PN VTF+ +L+ACS GLVEEGL+ F M + P ++HYGCL+D+LGRAG LE
Sbjct: 315 EGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGMLE 374
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A++V +P E + V+ LL AC HG+VE+G+ + E +GG +VL+ N+
Sbjct: 375 DAKRVVREMPLEPDSYVL-GALLNACRVHGDVELGKETVECLAERSLDHGGVHVLLSNMY 433
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ D ++R+ ++E+ K PG SL+
Sbjct: 434 ASANQWEDVAKVRKGMEEKKVKKVPGCSLI 463
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 97/377 (25%), Positives = 156/377 (41%), Gaps = 76/377 (20%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFD ++++ + G++ +A LF +P R W ++ +T
Sbjct: 17 LFDPFAAGRIISF----CAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATV 72
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L+L++ M++ + P+ T + A Q D+ L+H + G+ A+ V N L+
Sbjct: 73 LSLYKYMLSTGFL-PNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDF-VQNGLL 130
Query: 128 DTYAKCGCIFSALKLFEDISVER------------------------------KNLVSWT 157
YA C C+ SA +LF D SV R KN VSW+
Sbjct: 131 HLYASCNCMDSARRLF-DGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWS 189
Query: 158 SIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE 217
++I+G+A G+ +EA+E F MQ +PN + L AC+ G +++G ++ V+
Sbjct: 190 AMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQG-RWIHAYVDR 248
Query: 218 CEVLPDIKHYGCLIDMLGRAGRLEQAEKV---------------ASGIPSE--------- 253
++ D LIDM + G +E A +V SG+ +
Sbjct: 249 NRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEM 308
Query: 254 ---------ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM-YNILAG 303
N V + LL ACS G VE G R+ + M YG + V+ Y L
Sbjct: 309 FTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKS---MTNIYGIEPVVQHYGCLVD 365
Query: 304 VW-RYGDAERLRRVVDE 319
+ R G E +RVV E
Sbjct: 366 LLGRAGMLEDAKRVVRE 382
>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
Length = 852
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/322 (37%), Positives = 187/322 (58%), Gaps = 7/322 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYTRMNRSNGALALF 71
+ +L+ +N +I K + ARS+F+++P RNVV+WT +I G+ + SN AL LF
Sbjct: 405 DEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLF 464
Query: 72 RRMVACEY-TEPSEITILAVFPAIWQNGDVRNCQLIHGYG-EKRGFNAFHIHVSNCLIDT 129
M++ Y P+ TI + A +R + IH Y +++ V+NCLI+
Sbjct: 465 VEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINM 524
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
Y+KCG + +A +F+ +S +K+ +SWTS+++G+ MHG G EA++ F++M+K P+ +
Sbjct: 525 YSKCGDVDTARHVFDSMS--QKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDI 582
Query: 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
TFL VL ACSH G+V++GL +FD M + + P +HY ID+L R GRL++A K
Sbjct: 583 TFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKD 642
Query: 250 IPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGD 309
+P E T VVW LL AC H NVE+ E K++EM G Y L+ NI A R+ D
Sbjct: 643 MPMEPT-AVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKD 701
Query: 310 AERLRRVVDERNALKFPGRSLV 331
R+R ++ + K PG S V
Sbjct: 702 VARIRHLMKKSGIKKRPGCSWV 723
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 143/289 (49%), Gaps = 23/289 (7%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV----VSWTGIID 56
+++ K+F+ + +++V+WN M+ G + G + A LF+ M N+ V+WT +I
Sbjct: 277 LMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIA 336
Query: 57 GYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF- 115
GY++ S+ AL +FR+M+ + P+ +TI++V A G IH Y K
Sbjct: 337 GYSQRGCSHEALNVFRQMIF-SGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLL 395
Query: 116 ---NAF-----HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 167
N F + V N LID Y+KC +A +F+DI +E +N+V+WT +I G A +G
Sbjct: 396 TLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYG 455
Query: 168 MGKEAVENFERM--QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIK 225
+A++ F M + + PN T +L AC+H + G + ++ + D
Sbjct: 456 DSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQY--DSS 513
Query: 226 HY---GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
Y CLI+M + G ++ A V + + + + W +++ HG
Sbjct: 514 AYFVANCLINMYSKCGDVDTARHVFDSMSQK--SAISWTSMMTGYGMHG 560
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 141/311 (45%), Gaps = 55/311 (17%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCR---NVVSWTGIIDGYTRMNRSNGALAL 70
E N+ N ++ + G LE A +F+E+ R +V+SW I+ + + + + AL L
Sbjct: 149 ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDL 208
Query: 71 FRRMVACEYTEPSE-----ITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
F +M + +P+ I+I+ + PA V + +HG + G + V N
Sbjct: 209 FSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNG-TFLDVFVGNA 267
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
LID YAKCG + +A+K+F +E K++VSW ++++G++ G K A E F+ M+K +
Sbjct: 268 LIDAYAKCGLMENAVKVFN--MMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIP 325
Query: 186 -----------------------------------PNRVTFLSVLNACSHGGLVEEGLKF 210
PN VT +SVL+AC+ G +G++
Sbjct: 326 LDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEI 385
Query: 211 FDKMVEECEVL---------PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWR 261
++ C + D+ Y LIDM + + A + IP E NVV W
Sbjct: 386 HAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWT 445
Query: 262 TLLGACSFHGN 272
++G + +G+
Sbjct: 446 VMIGGHAQYGD 456
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 118/274 (43%), Gaps = 16/274 (5%)
Query: 12 LPERNLVTWNVMITGLVK----WGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LP ++ + TG+V G +YA + E + V W +I + + R + A
Sbjct: 42 LPSEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSA 101
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
+ + RM+ T T+ V A + R HG GF + ++ + N L+
Sbjct: 102 INVSCRMLRAG-TRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFES-NVFICNALV 159
Query: 128 DTYAKCGCIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL-K 185
Y++CG + A +F++I+ +++SW SI+S A++ F +M +V K
Sbjct: 160 AMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEK 219
Query: 186 PNR-----VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
P ++ +++L AC V + + + L D+ LID + G +
Sbjct: 220 PTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFL-DVFVGNALIDAYAKCGLM 278
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
E A KV + + E +VV W ++ S GN +
Sbjct: 279 ENAVKVFNMM--EFKDVVSWNAMVAGYSQSGNFK 310
>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Vitis vinifera]
Length = 632
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 116/331 (35%), Positives = 200/331 (60%), Gaps = 4/331 (1%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
+ + ++F E+ +++V+W V++ G+++ + R +F+EMP RN V+WT +I GY
Sbjct: 168 LMGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLD 227
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+ + AL R M+ E + +T+ ++ A Q+GD+ + +H Y K +I
Sbjct: 228 SGLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNI 287
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V ++D YAKCG I A K F+ + ++N+VSW +++SG AMHG+G+ A++ F +M
Sbjct: 288 MVGTAMVDMYAKCGRIHIAFKFFKKMP--QRNVVSWNAMLSGLAMHGLGRAALDIFPQMF 345
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
K KP+ VTF SVL+ACSH GLV++G +F + + P ++HY C++D+LGRAGRL
Sbjct: 346 KEA-KPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVYGITPKVEHYACMVDLLGRAGRL 404
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+AE + +P N VV +LLG+CS HG +++GE + +++++++ ++L+ N+
Sbjct: 405 EEAEILVREMPIR-PNEVVLGSLLGSCSIHGKLQLGEHLLQELVQLDPQNTEYHILLSNM 463
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + A LR+V+ +R K PG S +
Sbjct: 464 YALAGKQNRANSLRQVLKKRGIKKVPGMSSI 494
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 25/154 (16%)
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N L+ YA CGC + A K+F++I K+ V WT+++ F H + EA+ F M++
Sbjct: 52 LHNALLQFYASCGCAWQARKVFDEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRR 111
Query: 182 VVLKPNRVTFLSVLNACS-----------HGGLVEEGLKFFDKMVEECEVLPDIKHYGCL 230
+KP+ VT + + C+ HG +V+ GL +K +
Sbjct: 112 CGVKPDEVTLVCLFGGCARLGDVVVGAQGHGCMVKMGLGGVEKACNA------------V 159
Query: 231 IDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
+DM ++G + +A +V + + +VV W +L
Sbjct: 160 MDMYAKSGLMGEARRVFYEMKGQ--SVVSWTVIL 191
>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
Length = 745
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/322 (37%), Positives = 187/322 (58%), Gaps = 7/322 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYTRMNRSNGALALF 71
+ +L+ +N +I K + ARS+F+++P RNVV+WT +I G+ + SN AL LF
Sbjct: 298 DEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLF 357
Query: 72 RRMVACEY-TEPSEITILAVFPAIWQNGDVRNCQLIHGYG-EKRGFNAFHIHVSNCLIDT 129
M++ Y P+ TI + A +R + IH Y +++ V+NCLI+
Sbjct: 358 VEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINM 417
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
Y+KCG + +A +F+ +S +K+ +SWTS+++G+ MHG G EA++ F++M+K P+ +
Sbjct: 418 YSKCGDVDTARHVFDSMS--QKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDI 475
Query: 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
TFL VL ACSH G+V++GL +FD M + + P +HY ID+L R GRL++A K
Sbjct: 476 TFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKD 535
Query: 250 IPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGD 309
+P E T VVW LL AC H NVE+ E K++EM G Y L+ NI A R+ D
Sbjct: 536 MPMEPT-AVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKD 594
Query: 310 AERLRRVVDERNALKFPGRSLV 331
R+R ++ + K PG S V
Sbjct: 595 VARIRHLMKKSGIKKRPGCSWV 616
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 143/289 (49%), Gaps = 23/289 (7%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV----VSWTGIID 56
+++ K+F+ + +++V+WN M+ G + G + A LF+ M N+ V+WT +I
Sbjct: 170 LMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIA 229
Query: 57 GYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF- 115
GY++ S+ AL +FR+M+ + P+ +TI++V A G IH Y K
Sbjct: 230 GYSQRGCSHEALNVFRQMIF-SGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLL 288
Query: 116 ---NAF-----HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 167
N F + V N LID Y+KC +A +F+DI +E +N+V+WT +I G A +G
Sbjct: 289 TLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYG 348
Query: 168 MGKEAVENFERM--QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIK 225
+A++ F M + + PN T +L AC+H + G + ++ + D
Sbjct: 349 DSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQY--DSS 406
Query: 226 HY---GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
Y CLI+M + G ++ A V + + + + W +++ HG
Sbjct: 407 AYFVANCLINMYSKCGDVDTARHVFDSMSQK--SAISWTSMMTGYGMHG 453
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 141/311 (45%), Gaps = 55/311 (17%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCR---NVVSWTGIIDGYTRMNRSNGALAL 70
E N+ N ++ + G LE A +F+E+ R +V+SW I+ + + + + AL L
Sbjct: 42 ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDL 101
Query: 71 FRRMVACEYTEPSE-----ITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
F +M + +P+ I+I+ + PA V + +HG + G + V N
Sbjct: 102 FSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNG-TFLDVFVGNA 160
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
LID YAKCG + +A+K+F +E K++VSW ++++G++ G K A E F+ M+K +
Sbjct: 161 LIDAYAKCGLMENAVKVFN--MMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIP 218
Query: 186 -----------------------------------PNRVTFLSVLNACSHGGLVEEGLKF 210
PN VT +SVL+AC+ G +G++
Sbjct: 219 LDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEI 278
Query: 211 FDKMVEECEVL---------PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWR 261
++ C + D+ Y LIDM + + A + IP E NVV W
Sbjct: 279 HAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWT 338
Query: 262 TLLGACSFHGN 272
++G + +G+
Sbjct: 339 VMIGGHAQYGD 349
>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 615
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 181/311 (58%), Gaps = 5/311 (1%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ +K G+ AR LF MP +N+VSW +I G AL +FRRM
Sbjct: 277 NALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGL- 335
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+P +T++ V + GD+ + +H Y +K A +V+N L+D YAKCG I A
Sbjct: 336 KPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKA-DGYVANALVDMYAKCGSIDQAF 394
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
+F+ +++ K++ S+T++I GFAMHG A+ F M ++ ++P+ VT + VL+ACSH
Sbjct: 395 MVFQ--AMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSACSH 452
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
GL+EEG + F M + P +HYGC++D+LGRAG + +AE + +P + + VW
Sbjct: 453 AGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEAFTNKMPI-VPDASVW 511
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320
+LLGAC H VE+GE V +K++EME G Y+LM NI + R+ DA + R+ + +
Sbjct: 512 GSLLGACKIHAKVELGETVIQKLIEMEPERDGAYILMSNIYSSANRWRDALKWRKAMKQN 571
Query: 321 NALKFPGRSLV 331
N K PG S +
Sbjct: 572 NIKKTPGCSSI 582
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 123/281 (43%), Gaps = 13/281 (4%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS-NGALALFRRMVACEYTEPSEITILAVF 91
L YA SL V + II + N + +L+R+M+ + P T+ +
Sbjct: 87 LWYASSLANFCHQNPVYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGLS-PDTYTLPYLL 145
Query: 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151
A Q+ IH + K G ++ ++ V N L+ YA G I + K+F+
Sbjct: 146 KACSQSHAFIEALQIHAHSIKTGLSS-NLFVKNTLMRFYAVSGFIEAVEKVFDQ--GPHW 202
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
+L+SWT++I ++ G EA+ F RM +R+T + VL+ACS G G K
Sbjct: 203 DLISWTTLIQAYSKMGYPSEAIAAFFRMN---CTADRMTLVVVLSACSQLGDFTLGKKIL 259
Query: 212 DKMVEEC-EVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
M +V D+ L+DM + G+ A ++ +P + N+V W +++ +
Sbjct: 260 AYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMP--VKNLVSWNSMISGLAHQ 317
Query: 271 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
G + + R++ M G D V + +L GD E
Sbjct: 318 GLFKEALHMFRRMQTM--GLKPDSVTLVGVLNSCANLGDLE 356
>gi|357146237|ref|XP_003573921.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 531
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 182/327 (55%), Gaps = 5/327 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FD +P ++ + WN M+ V+ ++E A LF MP R+VVSW +I GY + R
Sbjct: 172 RVFDSMPTKSTIAWNTMVHQYVRNKDIEAAYRLFLAMPRRDVVSWNTVIAGYCLVGRCKE 231
Query: 67 ALALFRRMVACE--YTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
AL LFR+MV+ P+ T+ V A G + +H Y +K N +
Sbjct: 232 ALGLFRQMVSPSSCTVHPNGPTMSTVLSACAGAGCLETGIWVHLYIDKNQMNDNGT-LDR 290
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
CLID YAKCG I AL++FE +R +L SWT++I G AMHG + + F MQ +
Sbjct: 291 CLIDMYAKCGSIDKALQVFEKAPGKR-DLYSWTTVICGLAMHGRANDVLRMFSMMQDSGM 349
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
P+ VTF+ VLNAC+HGGLV+EGL F M E+ + P I+HYGC+ID+LGR GRL +A
Sbjct: 350 CPDDVTFVGVLNACAHGGLVDEGLHHFYSMQEKYRITPKIEHYGCMIDLLGRVGRLPEAY 409
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
++ +P + N+V+W L AC H +VE+GE ++ ++ V+M ++ A
Sbjct: 410 RMIQTMPMK-PNMVIWGAFLSACKVHSSVELGEIAAAEVTRLDPDDPWARVMMSSMYAKA 468
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
+ R RR ++ K PG S V
Sbjct: 469 QDWSGLARERREMNSLQMKKTPGCSSV 495
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 134/288 (46%), Gaps = 42/288 (14%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
+++ G +AR LF+EMP +++V+ T + + ++ AL LF+ M+A +
Sbjct: 50 TALLSAYGALGRSGHARDLFDEMPNQSLVARTAMARAHAVSGQAAQALDLFQDMIADGFM 109
Query: 81 EPSEITILAVFPAIWQNGDVR------------------------NCQLIHGYGE----- 111
P + + V A G + +LI YGE
Sbjct: 110 -PDNVALAVVLAACHGAGSCTARRSPGRMVHAFIVACGIEPDVFVSTELIRVYGERGEMT 168
Query: 112 --KRGFNAFHIHVS---NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 166
+R F++ + N ++ Y + I +A +LF +++ R+++VSW ++I+G+ +
Sbjct: 169 VARRVFDSMPTKSTIAWNTMVHQYVRNKDIEAAYRLF--LAMPRRDVVSWNTVIAGYCLV 226
Query: 167 GMGKEAVENFERM---QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD 223
G KEA+ F +M + PN T +VL+AC+ G +E G+ + +++ ++ +
Sbjct: 227 GRCKEALGLFRQMVSPSSCTVHPNGPTMSTVLSACAGAGCLETGI-WVHLYIDKNQMNDN 285
Query: 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
CLIDM + G +++A +V P + ++ W T++ + HG
Sbjct: 286 GTLDRCLIDMYAKCGSIDKALQVFEKAPGK-RDLYSWTTVICGLAMHG 332
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/330 (37%), Positives = 191/330 (57%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ +LFD R++VTW +I G K G++ AR LF+EMP +N VSW+ +I GY ++
Sbjct: 164 MDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQI 223
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL LF M + P+ I+ A G + + IH Y ++ I
Sbjct: 224 GLFREALELFNDMQIAGF-RPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRI- 281
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LID YAKCGC+ +A ++F+++ +++ ++TS+ISG A HG A+E F RMQ
Sbjct: 282 LGTALIDMYAKCGCVETACRVFDEML--DRDVFAFTSLISGLANHGHSATAIEMFTRMQN 339
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ PN VTF+ +L+ACS GLVEEGL+ F M + P ++HYGCL+D+LGRAG LE
Sbjct: 340 EGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGMLE 399
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A++V +P E + V+ LL AC HG+VE+G+ + E +GG +VL+ N+
Sbjct: 400 DAKRVVREMPLEPDSYVLG-ALLNACRVHGDVELGKETVECLAERSLDHGGVHVLLSNMY 458
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ D ++R+ ++E+ K PG SL+
Sbjct: 459 ASANQWEDVAKVRKGMEEKKVKKVPGCSLI 488
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 97/377 (25%), Positives = 156/377 (41%), Gaps = 76/377 (20%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFD ++++ + G++ +A LF +P R W ++ +T
Sbjct: 42 LFDPFAAGRIISF----CAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATV 97
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L+L++ M++ + P+ T + A Q D+ L+H + G+ A+ V N L+
Sbjct: 98 LSLYKYMLSTGFL-PNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDF-VQNGLL 155
Query: 128 DTYAKCGCIFSALKLFEDISVER------------------------------KNLVSWT 157
YA C C+ SA +LF D SV R KN VSW+
Sbjct: 156 HLYASCNCMDSARRLF-DGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWS 214
Query: 158 SIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE 217
++I+G+A G+ +EA+E F MQ +PN + L AC+ G +++G ++ V+
Sbjct: 215 AMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQG-RWIHAYVDR 273
Query: 218 CEVLPDIKHYGCLIDMLGRAGRLEQAEKV---------------ASGIPSE--------- 253
++ D LIDM + G +E A +V SG+ +
Sbjct: 274 NRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEM 333
Query: 254 ---------ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM-YNILAG 303
N V + LL ACS G VE G R+ + M YG + V+ Y L
Sbjct: 334 FTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKS---MTNIYGIEPVVQHYGCLVD 390
Query: 304 VW-RYGDAERLRRVVDE 319
+ R G E +RVV E
Sbjct: 391 LLGRAGMLEDAKRVVRE 407
>gi|224107245|ref|XP_002314420.1| predicted protein [Populus trichocarpa]
gi|222863460|gb|EEF00591.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 186/314 (59%), Gaps = 3/314 (0%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
++ + N +I G ++ ++ AR LF EMP R+V SW+ +I GYT+ ++ AL LF RMV
Sbjct: 258 HVASRNALIAGFIRNRIIDQARELFNEMPERDVFSWSTMISGYTQSDQPGMALELFHRMV 317
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
P+E+T+++VF AI G ++ + H Y + ++S +ID YAKCG
Sbjct: 318 TSG-IRPNEVTMVSVFSAIAALGTLKEGRWAHEYVHYNSI-PLNDNLSASIIDMYAKCGS 375
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
I +AL++F I + + W +II G A HG K ++E + +Q+ +K + +TF+ VL
Sbjct: 376 INTALEVFYQIRDKASTVSPWNTIICGLATHGHAKLSLEIYSDLQRRHIKLSAITFIGVL 435
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+AC H GLV G +F M + + PDI+HYGC++D+LG+AGRLE+ E++ +P +
Sbjct: 436 SACCHAGLVGLGKSYFKSMKSKYNIDPDIRHYGCMVDLLGKAGRLEEVEELIRSMPMK-A 494
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
+VV+W LL AC H N+ +GER + +++ +G +L+ N+ A V R+ DA +RR
Sbjct: 495 DVVIWGMLLSACKTHRNITIGERAAENLAKLDPSHGPSRILLSNLYADVGRWEDAFLVRR 554
Query: 316 VVDERNALKFPGRS 329
V+ + PG S
Sbjct: 555 VMQSHRMHRLPGYS 568
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 147/304 (48%), Gaps = 34/304 (11%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + LFDE+ E+N+V+WNVM+ G K G A+ +FE +P +++VSW IIDGY R+
Sbjct: 112 LGEARALFDEMQEKNVVSWNVMLNGYSKAGFANLAKEVFEMIPDKDIVSWGTIIDGYVRV 171
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF--- 118
R AL ++R MV+ PSE+T++ + A + + Q +H K F+ +
Sbjct: 172 ERLREALMMYRLMVSTGLG-PSEVTMIDLISACGRAMAIVEGQQLHCVVVKTSFDCYDFV 230
Query: 119 ---------------------------HIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151
H+ N LI + + I A +LF ++ +
Sbjct: 231 QATVIHFYSACGRINEACFQLEFGMKDHVASRNALIAGFIRNRIIDQARELFNEM--PER 288
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
++ SW+++ISG+ A+E F RM ++PN VT +SV +A + G ++EG ++
Sbjct: 289 DVFSWSTMISGYTQSDQPGMALELFHRMVTSGIRPNEVTMVSVFSAIAALGTLKEG-RWA 347
Query: 212 DKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ V + + +IDM + G + A +V I + + V W T++ + HG
Sbjct: 348 HEYVHYNSIPLNDNLSASIIDMYAKCGSINTALEVFYQIRDKASTVSPWNTIICGLATHG 407
Query: 272 NVEM 275
+ ++
Sbjct: 408 HAKL 411
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 109/219 (49%), Gaps = 35/219 (15%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
MI+G VK G L+ AR LFE MP + VS+T +I G+ + + A+ +++ M + P
Sbjct: 1 MISGYVKSGNLDDARKLFEVMPQKGCVSYTTMIMGFVKNDFWGEAIKVYKEMRSVGVV-P 59
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
+E+T+ +V A + G + +C+++HG K F+ F + VS L++ Y + A L
Sbjct: 60 NEVTMASVISACCRVGRIWDCRMLHGLVIKMMFDGF-VLVSTNLLNMYCASSSLGEARAL 118
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAVENF---------------------ERMQK 181
F+++ + KN+VSW +++G++ G A E F ER+++
Sbjct: 119 FDEM--QEKNVVSWNVMLNGYSKAGFANLAKEVFEMIPDKDIVSWGTIIDGYVRVERLRE 176
Query: 182 VV----------LKPNRVTFLSVLNACSHGGLVEEGLKF 210
+ L P+ VT + +++AC + EG +
Sbjct: 177 ALMMYRLMVSTGLGPSEVTMIDLISACGRAMAIVEGQQL 215
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
+I Y K G + A KLFE + +K VS+T++I GF + EA++ ++ M+ V +
Sbjct: 1 MISGYVKSGNLDDARKLFE--VMPQKGCVSYTTMIMGFVKNDFWGEAIKVYKEMRSVGVV 58
Query: 186 PNRVTFLSVLNACSHGGLVEE-----GL---KFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
PN VT SV++AC G + + GL FD V V ++ + C LG A
Sbjct: 59 PNEVTMASVISACCRVGRIWDCRMLHGLVIKMMFDGFV---LVSTNLLNMYCASSSLGEA 115
Query: 238 GRL--EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
L E EK NVV W +L S G + + V I
Sbjct: 116 RALFDEMQEK----------NVVSWNVMLNGYSKAGFANLAKEVFEMI 153
>gi|356510733|ref|XP_003524089.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Glycine max]
Length = 649
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 117/330 (35%), Positives = 194/330 (58%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+++ SKLF E+P ++++WN +I+GL + G+L A+ FE MP +N++SW II GY +
Sbjct: 324 MEEASKLFREMPSPDVLSWNSIISGLAQKGDLNLAKDFFERMPHKNLISWNTIIAGYEKN 383
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
GA+ LF M E P + T+ +V D+ + +H K I+
Sbjct: 384 EDYKGAIKLFSEM-QLEGERPDKHTLSSVISVSTGLVDLYLGKQLHQLVTKTVLPDSPIN 442
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
N LI Y++CG I A +F +I + K++++W ++I G+A HG EA+E F+ M++
Sbjct: 443 --NSLITMYSRCGAIVDACTVFNEIKL-YKDVITWNAMIGGYASHGSAAEALELFKLMKR 499
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ + P +TF+SVLNAC+H GLVEEG + F M+ + + P ++H+ L+D+LGR G+L+
Sbjct: 500 LKIHPTYITFISVLNACAHAGLVEEGWRQFKSMINDYGIEPRVEHFASLVDILGRQGQLQ 559
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + + +P + + VW LLGAC H NVE+ ++ +E YVL+YN+
Sbjct: 560 EAMDLINTMPFK-PDKAVWGALLGACRVHNNVELALVAADALIRLEPESSAPYVLLYNMY 618
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + ++ DAE +R +++E+N K G S V
Sbjct: 619 ANLGQWDDAESVRVLMEEKNVKKQAGYSWV 648
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 133/283 (46%), Gaps = 40/283 (14%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
F+++G +LF+ +P+R+ V+WN +I+G K G ++ A LF MP N VS+ +I G+
Sbjct: 118 FVEEGRRLFELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMPEHNAVSYNAVITGFLL 177
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGD-------VRNCQLIHGYGEKR 113
A+ FR M E ++ A+ + +NG+ +R C G G+
Sbjct: 178 NGDVESAVGFFRTM-----PEHDSTSLCALISGLVRNGELDLAAGILREC----GNGDDG 228
Query: 114 GFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE-----------RKNLVSWTSIISG 162
+ +H N LI Y + G + A +LF+ I + R+N+VSW S++
Sbjct: 229 KDDL--VHAYNTLIAGYGQRGHVEEARRLFDVIPDDDDDGNEGKRRFRRNVVSWNSMMMC 286
Query: 163 FAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP 222
+ G A E F+RM ++ + ++ ++++ +EE K F +M P
Sbjct: 287 YVKAGDIVFARELFDRM----VERDNCSWNTLISCYVQISNMEEASKLFREMPS-----P 337
Query: 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
D+ + +I L + G L A+ +P + N++ W T++
Sbjct: 338 DVLSWNSIISGLAQKGDLNLAKDFFERMPHK--NLISWNTIIA 378
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 127/284 (44%), Gaps = 35/284 (12%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ L++ G + AR+LF+ M R+ V+W +I GY + A LF M +
Sbjct: 42 NKKLSNLIRSGRISEARTLFDSMKRRDTVTWNSMISGYVQRREIARARQLFDEMPRRDVV 101
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
S I++ + + + V + + +R ++ N +I YAK G + AL
Sbjct: 102 --SWNLIVSGYFSCCGSRFVEEGRRLFELMPQRDCVSW-----NTVISGYAKNGRMDQAL 154
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
KLF ++ N VS+ ++I+GF ++G + AV F M + + T L L +
Sbjct: 155 KLFN--AMPEHNAVSYNAVITGFLLNGDVESAVGFFRTMPE-----HDSTSLCALIS--- 204
Query: 201 GGLVEEG-LKFFDKMVEEC----EVLPDIKH-YGCLIDMLGRAGRLEQAEKVASGIPSEI 254
GLV G L ++ EC + D+ H Y LI G+ G +E+A ++ IP +
Sbjct: 205 -GLVRNGELDLAAGILRECGNGDDGKDDLVHAYNTLIAGYGQRGHVEEARRLFDVIPDDD 263
Query: 255 T-----------NVVVWRTLLGACSFHGNVEMGERVTRKILEME 287
NVV W +++ G++ + +++E +
Sbjct: 264 DDGNEGKRRFRRNVVSWNSMMMCYVKAGDIVFARELFDRMVERD 307
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 80/161 (49%), Gaps = 12/161 (7%)
Query: 115 FNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVE 174
+N+ ++ SN + + G I A LF+ S++R++ V+W S+ISG+ A +
Sbjct: 33 YNSSPLNQSNKKLSNLIRSGRISEARTLFD--SMKRRDTVTWNSMISGYVQRREIARARQ 90
Query: 175 NFERM-QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDM 233
F+ M ++ V+ N + +S +C VEEG + F+ M + D + +I
Sbjct: 91 LFDEMPRRDVVSWNLI--VSGYFSCCGSRFVEEGRRLFELMPQR-----DCVSWNTVISG 143
Query: 234 LGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
+ GR++QA K+ + +P N V + ++ +G+VE
Sbjct: 144 YAKNGRMDQALKLFNAMPEH--NAVSYNAVITGFLLNGDVE 182
>gi|345505230|gb|AEN99839.1| chlororespiratory reduction 4 [Nasturtium officinale]
Length = 614
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 195/332 (58%), Gaps = 8/332 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D LF +P R++VTW MI G K G + A++LF++MP R+VV++ ++ GY +
Sbjct: 269 MEDAKDLFHVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQN 328
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY-GEKRGFNAFHI 120
AL +F M + P E T++ V AI Q G + +H Y EK+ + +
Sbjct: 329 RHHMEALEIFSDMEKESHLTPDETTLVIVLSAIAQLGQLSKAMDMHLYIVEKQFYLGGKL 388
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V+ LID Y+KCG I A+ +FE I E K++ W ++I G A+HG+G+ A ++
Sbjct: 389 GVA--LIDMYSKCGSIQQAMCVFEGI--ENKSIDHWNAMIGGLAIHGLGESAFNILLEIE 444
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ ++P+ +TF+ VLNACSH GLV+EGL F+ M + ++ P ++HYGC++D+L R G +
Sbjct: 445 RRSIEPDYITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDLLSRCGSI 504
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG-GDYVLMYN 299
E A+ + +P E N V+WRT L AC+ H E+GE V + ++ ++ GY YVL+ N
Sbjct: 505 ELAKNLIEEMPIE-PNDVIWRTFLTACNHHKEFEIGELVAKHLI-LQAGYNPSSYVLLSN 562
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ A R+ D +R ++ ER K PG S +
Sbjct: 563 MYASFGRWKDVRNVRTMMKERKLQKVPGCSWI 594
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 151/300 (50%), Gaps = 23/300 (7%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDGYTRMNRS 64
++FD +P+R+ V++N MI G +K G +E AR LF+ MP +N++SW +I GY + +
Sbjct: 178 QIFDRMPQRDSVSYNSMIDGYIKCGLIESARELFDLMPREMKNLISWNSMISGYAQTSDG 237
Query: 65 -NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
N A LF M E I+ ++ ++G + + + + +R +
Sbjct: 238 VNIASKLFAEM-----PEKDLISWNSLIYGYVKHGRMEDAKDLFHVMPRRDVVTW----- 287
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
+ID YAK G + A LF+ + +++V++ S+++G+ + EA+E F M+K
Sbjct: 288 ATMIDGYAKLGFVHKAKTLFDQMP--HRDVVAYNSMMAGYVQNRHHMEALEIFSDMEKES 345
Query: 184 -LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
L P+ T + VL+A + G + + + +VE+ L K LIDM + G ++Q
Sbjct: 346 HLTPDETTLVIVLSAIAQLGQLSKAMDMHLYIVEKQFYLGG-KLGVALIDMYSKCGSIQQ 404
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME-RGYGGDYVLMYNIL 301
A V GI E ++ W ++G + HG +GE +LE+E R DY+ +L
Sbjct: 405 AMCVFEGI--ENKSIDHWNAMIGGLAIHG---LGESAFNILLEIERRSIEPDYITFVGVL 459
>gi|222628408|gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
Length = 594
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/305 (39%), Positives = 180/305 (59%), Gaps = 5/305 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
KL++ + E+ +V M+ G K G++E A S+F MP ++VVSW+ +I GY ++
Sbjct: 226 KLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPME 285
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL LF M +P EIT+L+V A G + + IH + E + + N L
Sbjct: 286 ALNLFHDMQR-SGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKI-LPIGNAL 343
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID ++KCG + AL +F ++ +KN+V+WTSII+ AMHG G+ A+ FE M+ ++P
Sbjct: 344 IDMFSKCGSLTLALDVFN--AMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQP 401
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N VTFL +L AC H GLVEEG F MV++ + P +HYGC++D+LGRA L QA +
Sbjct: 402 NGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADL 461
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ NVV+W +LL AC HG++E+G +KILE++ +GG VL+ NI A
Sbjct: 462 IQSMHLR-PNVVIWGSLLAACRMHGDLELGTFAAKKILELDPNHGGAQVLLSNIYAEYGN 520
Query: 307 YGDAE 311
+ D +
Sbjct: 521 WNDVK 525
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 138/279 (49%), Gaps = 23/279 (8%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIID----- 56
++D ++FD +P+R+LV W VM+ + E A LF M VV II
Sbjct: 120 VEDARRVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVVPDQVIIATVLST 179
Query: 57 -GYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF 115
+TR R A+ + M+ + ++++ A+ D+ + ++ ++
Sbjct: 180 CAHTRNLRFGKAIHSY--MLVSDTLIDAQVSC-ALMNMYASCADMEMAEKLYNRVSEK-- 234
Query: 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
I +S ++ YAK G + A +F + K++VSW+++I+G+A EA+
Sbjct: 235 ---EIVLSTTMVYGYAKNGKVEIAHSIFNGMPA--KDVVSWSAMIAGYAESSKPMEALNL 289
Query: 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEG--LKFFDKMVEECEVLPDIKHYGCLIDM 233
F MQ+ +KP+ +T LSV++AC++ G +E+ + F + C++LP LIDM
Sbjct: 290 FHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPI---GNALIDM 346
Query: 234 LGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
+ G L A V + +P + NVV W +++ A + HG+
Sbjct: 347 FSKCGSLTLALDVFNAMPQK--NVVTWTSIITASAMHGD 383
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 77/158 (48%), Gaps = 5/158 (3%)
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V L+ YA CG + A ++F+ + ++LV+W ++ + +EA+ F M++
Sbjct: 106 VGTALVRAYAACGRVEDARRVFD--GMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKR 163
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ P++V +VL+ C+H + G M+ + L D + L++M +E
Sbjct: 164 SRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVS-DTLIDAQVSCALMNMYASCADME 222
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERV 279
AEK+ + + + +V+ T++ + +G VE+ +
Sbjct: 223 MAEKLYNRVSEK--EIVLSTTMVYGYAKNGKVEIAHSI 258
>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 640
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/331 (36%), Positives = 192/331 (58%), Gaps = 10/331 (3%)
Query: 4 DGSK-LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
D +K FD + ERN+ +W ++I G +K G+++ ARS+F++MP +N+V+W+ +I GY +
Sbjct: 278 DAAKEFFDRMQERNVASWVMIIDGYIKVGDVDAARSVFDQMPEKNLVAWSTMIGGYAKTG 337
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNG--DVRNCQLIHGYGEKRGFNAFHI 120
+L L++ + +P E L + A Q G D + G N +
Sbjct: 338 HPYSSLKLYKTFKE-QGIKPDETFALGIISACSQLGVPDTAESVICDFVGPSLFPN---L 393
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V LID YAKCG I A+++FE V++K+L ++++I+ FA HG+ ++A+ F MQ
Sbjct: 394 QVVTSLIDMYAKCGNIERAVQVFE--MVDQKDLHCYSTVITAFANHGLSEDAISLFSEMQ 451
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
K +KP+ V FL VL AC+HGGLV EG + F +M++E + P KHY C++D+LGRAG L
Sbjct: 452 KANIKPDGVAFLGVLTACNHGGLVGEGRRLFRQMIDEYGIQPSEKHYACMVDILGRAGCL 511
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+A + +P N VW LL AC H NV++ E ++ ++E G+YVL++NI
Sbjct: 512 EEAHSLICSMPVA-PNATVWGALLSACRVHLNVQLAEAAATELFQIEPNNSGNYVLLFNI 570
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ D ++R ++ E K G S +
Sbjct: 571 YADAGQWDDFSKVRAMIRENRVRKNRGSSWI 601
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 153/314 (48%), Gaps = 26/314 (8%)
Query: 18 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVAC 77
+T N ++ K+G + YA LF+E P N WT +I G+T N+ A A F +M
Sbjct: 37 LTLNKLLRLYSKFGAVSYAHKLFDETPEPNSFLWTALIHGFTENNQYENAFAFFIKMHR- 95
Query: 78 EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIF 137
E P TI +V A+ + G +++ L++G + G+ F + V N +I+ + +CG +
Sbjct: 96 ENIVPLNFTIASVLKAVSRLGRIKDGDLVYGLAVRCGYE-FDLVVKNVMIELFMRCGEMG 154
Query: 138 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197
SA ++F+++ E ++ VSW S+I+G+ +G A + F+RM+ + N +++ S++
Sbjct: 155 SARQMFDEM--EERDAVSWNSMITGYGNNGRVDIARKLFDRME----ERNVISWTSMIQG 208
Query: 198 CSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNV 257
G + E F++M E+ D+ + ++ G L A + +P I +V
Sbjct: 209 YVKAGDLLEARVLFERMPEK-----DLASWKVMVSAYMSVGNLVAARNLFELMP--IHDV 261
Query: 258 VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVV 317
W ++ C G ++ + + M+ +V+ I+ G + GD + R V
Sbjct: 262 GTWNLMISGCCKAGEMDAAKEFFDR---MQERNVASWVM---IIDGYIKVGDVDAARSVF 315
Query: 318 DERNALKFPGRSLV 331
D+ P ++LV
Sbjct: 316 DQ-----MPEKNLV 324
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 160/347 (46%), Gaps = 50/347 (14%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FDE+ ER+ V+WN MITG G ++ AR LF+ M RNV+SWT +I GY +
Sbjct: 158 QMFDEMEERDAVSWNSMITGYGNNGRVDIARKLFDRMEERNVISWTSMIQGYVKAGDLLE 217
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRN---CQLIHGYGEKRGFNAFHIHVS 123
A LF RM E S +++ + ++ RN IH G +++ +S
Sbjct: 218 ARVLFERMP--EKDLASWKVMVSAYMSVGNLVAARNLFELMPIHDVG------TWNLMIS 269
Query: 124 NC--------------------------LIDTYAKCGCIFSALKLFEDISVERKNLVSWT 157
C +ID Y K G + +A +F+ + KNLV+W+
Sbjct: 270 GCCKAGEMDAAKEFFDRMQERNVASWVMIIDGYIKVGDVDAARSVFDQMP--EKNLVAWS 327
Query: 158 SIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE 217
++I G+A G +++ ++ ++ +KP+ L +++ACS G+ + V
Sbjct: 328 TMIGGYAKTGHPYSSLKLYKTFKEQGIKPDETFALGIISACSQLGVPDTAESVICDFVGP 387
Query: 218 CEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGE 277
+ P+++ LIDM + G +E+A +V + + ++ + T++ A + HG + E
Sbjct: 388 -SLFPNLQVVTSLIDMYAKCGNIERAVQVFEMVDQK--DLHCYSTVITAFANHG---LSE 441
Query: 278 RVTRKILEMERG-YGGDYVLMYNILAGVWR---YGDAERL-RRVVDE 319
EM++ D V +L G+ RL R+++DE
Sbjct: 442 DAISLFSEMQKANIKPDGVAFLGVLTACNHGGLVGEGRRLFRQMIDE 488
>gi|23617093|dbj|BAC20776.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
Length = 681
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/326 (34%), Positives = 198/326 (60%), Gaps = 6/326 (1%)
Query: 7 KLFDELPE-RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 65
++FDELP R+++TWN ++ G V+ G + AR +F+EMP R+ +SW+ ++ GY +
Sbjct: 202 RVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELE 261
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
AL +FR MV + P++ ++ A + G + + + +H ++ G ++V
Sbjct: 262 VALGVFRNMVE-QGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVC-MNVGAA 319
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
L+D YAKCGC+ A ++F+ + R+++ +W ++I G A HG+G++AVE FER L
Sbjct: 320 LVDMYAKCGCVAVAREVFD--GMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLS 377
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
P VTF+ VLN CS GLV EG ++F +VE+ + P+++HYGC++D+LGRAG + +A +
Sbjct: 378 PTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIE 437
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
+ G+ + V+W T+L +C HG V++G V K++E++ + G YVL+ I A
Sbjct: 438 LIEGM-HIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKAN 496
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
++ + +R+++ R K G SL+
Sbjct: 497 KWDEVREVRKLMSSRGTNKSAGWSLM 522
>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
Length = 651
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/326 (34%), Positives = 198/326 (60%), Gaps = 6/326 (1%)
Query: 7 KLFDELPE-RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 65
++FDELP R+++TWN ++ G V+ G + AR +F+EMP R+ +SW+ ++ GY +
Sbjct: 202 RVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELE 261
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
AL +FR MV + P++ ++ A + G + + + +H ++ G ++V
Sbjct: 262 VALGVFRNMVE-QGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVC-MNVGAA 319
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
L+D YAKCGC+ A ++F+ + R+++ +W ++I G A HG+G++AVE FER L
Sbjct: 320 LVDMYAKCGCVAVAREVFDGM--RRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLS 377
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
P VTF+ VLN CS GLV EG ++F +VE+ + P+++HYGC++D+LGRAG + +A +
Sbjct: 378 PTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIE 437
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
+ G+ + V+W T+L +C HG V++G V K++E++ + G YVL+ I A
Sbjct: 438 LIEGM-HIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKAN 496
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
++ + +R+++ R K G SL+
Sbjct: 497 KWDEVREVRKLMSSRGTNKSAGWSLM 522
>gi|413925246|gb|AFW65178.1| hypothetical protein ZEAMMB73_703358 [Zea mays]
Length = 572
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 123/326 (37%), Positives = 198/326 (60%), Gaps = 11/326 (3%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FDE+P RNLV+WN M+ G G+++ AR LF+ MP ++VVSWT ++ GY R R
Sbjct: 245 KMFDEMPARNLVSWNAMVRGYAVNGDVDGARELFDAMPEKDVVSWTCMVSGYARAGRHAQ 304
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF---NAFHIHVS 123
AL LFR M + + P+E+T+++VF A + ++ + H + KRG + F++ +
Sbjct: 305 ALELFRTMQSGD-VRPNEVTMVSVFSACARLAALKEGRWAHAFIGKRGMVLDDGFNLGAA 363
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
LID YAKCG A K+F S++RKN+ +W ++I+G A +G + ++ FE+M+
Sbjct: 364 --LIDMYAKCGRPDVAAKVFR--SLDRKNVSAWNALIAGLAANGDARRCIDVFEQMKVSD 419
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
KP+ VTF+SVL AC+ GLV+EG + F M V P++KHYGC++D+LGRAG +++A
Sbjct: 420 EKPDSVTFVSVLAACARAGLVDEGRRCFRSMSSGFGVQPELKHYGCMVDLLGRAGLVDEA 479
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI--LEMERGYGGDYVLMYNIL 301
E++ G+P + V+ TLLGAC ++ ERV R+I L ++ Y ++ ++
Sbjct: 480 EELVRGMPMAPDDKVL-ATLLGACRVRRRPDVAERVRRRIQSLNTKQPSRESYFMISDVR 538
Query: 302 AGVWRYGDAERLRRVVDERNALKFPG 327
A R+ A + + + + N +K G
Sbjct: 539 ATADRWAVALKAKGFMHKYNIMKLDG 564
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 145/301 (48%), Gaps = 15/301 (4%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
++V+WN ++ G + GEL AR F+ MP RN SW+ ++ Y + + A +F R
Sbjct: 159 DVVSWNTVVAGYARCGELGNARRAFDGMPRRNGASWSAMVGAYAAAGQLDVARDMFDRAP 218
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
A S +T ++ + ++G + + + R ++ N ++ YA G
Sbjct: 219 AAGR---SVVTWNSMVAGLARHGLLPLARKMFDEMPARNLVSW-----NAMVRGYAVNGD 270
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ A +LF+ ++ K++VSWT ++SG+A G +A+E F MQ ++PN VT +SV
Sbjct: 271 VDGARELFD--AMPEKDVVSWTCMVSGYARAGRHAQALELFRTMQSGDVRPNEVTMVSVF 328
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG-CLIDMLGRAGRLEQAEKVASGIPSEI 254
+AC+ ++EG + + VL D + G LIDM + GR + A KV + +
Sbjct: 329 SACARLAALKEGRWAHAFIGKRGMVLDDGFNLGAALIDMYAKCGRPDVAAKVFRSL--DR 386
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLR 314
NV W L+ + +G+ V ++ + D V ++LA R G + R
Sbjct: 387 KNVSAWNALIAGLAANGDARRCIDVFEQMKVSDE--KPDSVTFVSVLAACARAGLVDEGR 444
Query: 315 R 315
R
Sbjct: 445 R 445
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 86/199 (43%), Gaps = 20/199 (10%)
Query: 78 EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF--NAFHIHVSNCLIDTYAKCGC 135
+T P + FP+ + G +H +RG +AF + N L+ YA
Sbjct: 92 HFTFPPLAKSASKFPSFPRTG-----AQVHAQAARRGLLADAFAV---NSLLAMYAALRD 143
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
S + E + E ++VSW ++++G+A G A F+ M + N ++ +++
Sbjct: 144 AASMRGVLESCA-EAADVVSWNTVVAGYARCGELGNARRAFDGMPRR----NGASWSAMV 198
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
A + G ++ FD+ + + ++ L R G L A K+ +P+
Sbjct: 199 GAYAAAGQLDVARDMFDRAPAAGR---SVVTWNSMVAGLARHGLLPLARKMFDEMPAR-- 253
Query: 256 NVVVWRTLLGACSFHGNVE 274
N+V W ++ + +G+V+
Sbjct: 254 NLVSWNAMVRGYAVNGDVD 272
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
Query: 214 MVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
++E C D+ + ++ R G L A + G+P N W ++GA + G +
Sbjct: 150 VLESCAEAADVVSWNTVVAGYARCGELGNARRAFDGMPRR--NGASWSAMVGAYAAAGQL 207
Query: 274 EMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ V R + + G V +++AG+ R+G R++ DE P R+LV
Sbjct: 208 D----VARDMFDRAPAAGRSVVTWNSMVAGLARHGLLPLARKMFDE-----MPARNLV 256
>gi|115470713|ref|NP_001058955.1| Os07g0163900 [Oryza sativa Japonica Group]
gi|113610491|dbj|BAF20869.1| Os07g0163900 [Oryza sativa Japonica Group]
Length = 664
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/326 (34%), Positives = 198/326 (60%), Gaps = 6/326 (1%)
Query: 7 KLFDELPE-RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 65
++FDELP R+++TWN ++ G V+ G + AR +F+EMP R+ +SW+ ++ GY +
Sbjct: 202 RVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELE 261
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
AL +FR MV + P++ ++ A + G + + + +H ++ G ++V
Sbjct: 262 VALGVFRNMVE-QGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVC-MNVGAA 319
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
L+D YAKCGC+ A ++F+ + R+++ +W ++I G A HG+G++AVE FER L
Sbjct: 320 LVDMYAKCGCVAVAREVFDGM--RRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLS 377
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
P VTF+ VLN CS GLV EG ++F +VE+ + P+++HYGC++D+LGRAG + +A +
Sbjct: 378 PTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIE 437
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
+ G+ + V+W T+L +C HG V++G V K++E++ + G YVL+ I A
Sbjct: 438 LIEGM-HIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKAN 496
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
++ + +R+++ R K G SL+
Sbjct: 497 KWDEVREVRKLMSSRGTNKSAGWSLM 522
>gi|357153087|ref|XP_003576334.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 531
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/324 (37%), Positives = 196/324 (60%), Gaps = 8/324 (2%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
L E+PER++ WN IT + G++E A +F EMP R+ VSW +I GYT++ R A
Sbjct: 213 LSREMPERSVSWWNAEITRHARVGDMEAAARVFREMPGRDAVSWNSLIGGYTKLGRYVQA 272
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L +FR M EP+E+T+++V A + G++ + +HGY +G A +V N L+
Sbjct: 273 LEVFREMQDSG-VEPTELTLVSVLGACAEIGELELGKGVHGYIGSKGVVA-DGYVGNALV 330
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D YAKCG + A +LFE +S +++ W ++I GF++HG ++A+E F+ M+ ++P+
Sbjct: 331 DMYAKCGSLELARQLFESMST--RDITCWNAMIVGFSVHGYSRKALELFDAMR---VEPD 385
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
VTFL VL ACSHGGLV+EG +F M E+ +++P +KHYGC++DML R G++ +A ++
Sbjct: 386 HVTFLGVLIACSHGGLVDEGRVYFRSMTEDYKIVPGVKHYGCMVDMLCRCGKVAEAYQMI 445
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+ +P + N V+W+ +L AC HG++++ + ++ ++ GD + + N+ A R+
Sbjct: 446 NHMPVK-ANCVLWKMVLAACRVHGHIDLANKAFHELHQLMPIDDGDVITVSNVYAEAKRW 504
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
E LR V E K S V
Sbjct: 505 DVVEHLRTKVIEPGVWKHAAHSQV 528
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 82/215 (38%), Gaps = 44/215 (20%)
Query: 138 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197
S L L + + ++ IS A ++ F R+ ++ L F ++L +
Sbjct: 63 STLALLLSAAPSALSPPLYSPAISALASSPCPAASLAVFNRVSRLSLPTPLPAFPALLKS 122
Query: 198 CSHG------------GLVEEGLKFFDKMVEECEVLPDIKHYGC---------LIDMLGR 236
C+ G V +G++ ++++ GC L+ M G+
Sbjct: 123 CARAFGLCAAADGGGEGFVSKGMELHGRVLK----------LGCGGDRYVQNALVSMYGK 172
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
GRL A KV G+P+ N V W L+ A G++ E ++R++ E + +
Sbjct: 173 LGRLGDARKVFDGMPAR--NAVSWNALVAAHGATGDLHGVELLSREMPERSVSWWNAEIT 230
Query: 297 MYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ R GD E RV E PGR V
Sbjct: 231 RHA------RVGDMEAAARVFRE-----MPGRDAV 254
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 107/299 (35%), Gaps = 96/299 (32%)
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQN----------------GDVRNCQLIHGY 109
+LA+F R+ P L FPA+ ++ G V +HG
Sbjct: 96 ASLAVFNRVSRLSLPTP-----LPAFPALLKSCARAFGLCAAADGGGEGFVSKGMELHGR 150
Query: 110 GEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFA----M 165
K G +V N L+ Y K G + A K+F+ + +N VSW ++++ +
Sbjct: 151 VLKLGCGGDR-YVQNALVSMYGKLGRLGDARKVFDGMPA--RNAVSWNALVAAHGATGDL 207
Query: 166 HGM---------------------------------------GKEAV------------- 173
HG+ G++AV
Sbjct: 208 HGVELLSREMPERSVSWWNAEITRHARVGDMEAAARVFREMPGRDAVSWNSLIGGYTKLG 267
Query: 174 ------ENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY 227
E F MQ ++P +T +SVL AC+ G +E G K + V+ D
Sbjct: 268 RYVQALEVFREMQDSGVEPTELTLVSVLGACAEIGELELG-KGVHGYIGSKGVVADGYVG 326
Query: 228 GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM 286
L+DM + G LE A ++ + + ++ W ++ S HG +RK LE+
Sbjct: 327 NALVDMYAKCGSLELARQLFESMSTR--DITCWNAMIVGFSVHG-------YSRKALEL 376
>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
Length = 644
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 113/311 (36%), Positives = 189/311 (60%), Gaps = 5/311 (1%)
Query: 9 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGAL 68
FD +P +N V+W M+ L K ++ AR FE++P ++++SW +I Y + R + AL
Sbjct: 269 FDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEAL 328
Query: 69 ALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLID 128
L+ RM P E T+ AV A Q GD+ + ++IH + F+ + + N L+D
Sbjct: 329 DLYNRMKLLGLA-PDEFTLAAVLSACGQLGDLASGKMIHDC-IRDNFHNPGVALFNSLLD 386
Query: 129 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR 188
YA+CG + +A+ LF ++ KN++SW +II AMHG ++A+ F M P+
Sbjct: 387 MYARCGQVDTAISLFSEMP--SKNVISWNAIIGALAMHGRAQDALMFFRSMVFDAFPPDE 444
Query: 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
+TF+++L+AC+HGGL+E G +F M V P ++HY C++D+LGR G+L +A +
Sbjct: 445 ITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIK 504
Query: 249 GIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
+P +VVVW LLGAC HG++++G++V +++LE+E GG +VL+ N+L ++
Sbjct: 505 DMPMR-PDVVVWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVLISNMLYETHQWE 563
Query: 309 DAERLRRVVDE 319
D +RLR+++ E
Sbjct: 564 DMKRLRKLMRE 574
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 134/287 (46%), Gaps = 42/287 (14%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ G L +R F+EM RNVVSW +I+GY + + A +LF M +
Sbjct: 149 NALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRR-QGL 207
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
E T++++ A G++ +L+H + RG + ++N L+D Y KCG + A
Sbjct: 208 LADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCR-IDLILANALVDMYGKCGDLLMAH 266
Query: 141 KLFEDI-----------------------------SVERKNLVSWTSIISGFAMHGMGKE 171
F+ + + K+++SW ++IS + G E
Sbjct: 267 TCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHE 326
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVL----PDIKHY 227
A++ + RM+ + L P+ T +VL+AC G + G KM+ +C P + +
Sbjct: 327 ALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASG-----KMIHDCIRDNFHNPGVALF 381
Query: 228 GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
L+DM R G+++ A + S +PS+ NV+ W ++GA + HG +
Sbjct: 382 NSLLDMYARCGQVDTAISLFSEMPSK--NVISWNAIIGALAMHGRAQ 426
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 145/319 (45%), Gaps = 22/319 (6%)
Query: 10 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALA 69
D++ + L ++ + G W YAR LF+ +P + + +I Y + AL
Sbjct: 41 DDVTSQILASYCALPAGGGVW----YARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALP 96
Query: 70 LFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDT 129
L R M+ P+E T+ + A + + + HG K GF + V N L+ +
Sbjct: 97 LLRGMIR-RGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVG-QVFVGNALLHS 154
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
YA G + + + F+++ V+R N+VSW S+I+G+A G +EA FE M++ L +
Sbjct: 155 YASAGSLGDSRRFFDEM-VDR-NVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEF 212
Query: 190 TFLSVLNACSHGGLVEEG-LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
T +S+L ACS G +E G L +V C + D+ L+DM G+ G L A
Sbjct: 213 TLVSLLFACSAEGNLEFGKLVHSHLLVRGCRI--DLILANALVDMYGKCGDLLMAHTCFD 270
Query: 249 GIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
+P N V W ++L A + +++ +I E ++ +N + + G
Sbjct: 271 MMP--FKNAVSWTSMLCALAKRASIDAARDWFEQIPEKS-------IISWNAMISCYVQG 321
Query: 309 DAERLRRVVDERNALKFPG 327
R +D N +K G
Sbjct: 322 G--RFHEALDLYNRMKLLG 338
>gi|226530803|ref|NP_001148047.1| LOC100281656 [Zea mays]
gi|195615502|gb|ACG29581.1| selenium-binding protein-like [Zea mays]
Length = 597
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 112/302 (37%), Positives = 178/302 (58%), Gaps = 4/302 (1%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEY-TEPSEITILA 89
G+ + AR LF+EMP R+ V+W +I Y R R+ AL LF M + +EP ++T +
Sbjct: 170 GDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFEEMRGKDSESEPDDVTCIL 229
Query: 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE 149
+ A G + + + Y E+ G+ + V N LI Y +CGC+ A ++F
Sbjct: 230 LLQACSSLGALDFGEQVWAYAEEHGYGG-ELKVRNSLITMYLRCGCVDKAYRVFS--GTP 286
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
+K++V+WT++ISG A +G G +A+ FE M + + P+ TF VL+ACSH GLV+EG +
Sbjct: 287 QKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFR 346
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
FFD M E + P+++HYGC++D++GRAG L++A + + + +WRTLLGAC
Sbjct: 347 FFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRI 406
Query: 270 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
HG+V++GERV ++E++ GDYVL+ N A V + +R+++ E PG +
Sbjct: 407 HGHVDLGERVIGNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEIRKLMQEEGIQTTPGCT 466
Query: 330 LV 331
V
Sbjct: 467 TV 468
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 22/168 (13%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +IT ++ G ++ A +F P ++VV+WT +I G N A+++F M+ +
Sbjct: 263 NSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSD-V 321
Query: 81 EPSEITILAVFPAIWQNG---------DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYA 131
P E T V A +G D+ C+ YG K + C++D
Sbjct: 322 APDEQTFTGVLSACSHSGLVDEGFRFFDMMRCE----YGLKPNVRHY-----GCIVDLMG 372
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKEAVENF 176
+ G + A + + + W +++ +HG +G+ + N
Sbjct: 373 RAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVIGNL 420
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV----SWTGIIDGYTRMN 62
++F P++++VTW MI+GL G A S+FEEM +V ++TG++ +
Sbjct: 280 RVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSG 339
Query: 63 RSNGALALFRRMVACEY 79
+ F M+ CEY
Sbjct: 340 LVDEGFRFF-DMMRCEY 355
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 190/330 (57%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D +LFD + E++ VTW M+ G + E AR + MP +++V+W +I Y +
Sbjct: 283 IEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQN 342
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ N AL +F + + + ++IT+++ A Q G + + IH Y +K G + H
Sbjct: 343 GKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIR-MNFH 401
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V++ LI Y+KCG + + ++F SVE++++ W+++I G AMHG G EAV+ F +MQ+
Sbjct: 402 VTSALIHMYSKCGDLEKSREVFN--SVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQE 459
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPN VTF +V ACSH GLV+E F +M ++P+ KHY C++D+LGR+G LE
Sbjct: 460 ANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLE 519
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A K +P + VW LLGAC H N+ + E ++LE+E G +VL+ NI
Sbjct: 520 KAVKFIEAMPIP-PSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIY 578
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + ++ + LR+ + K PG S +
Sbjct: 579 AKLGKWENVSELRKHMRVTGLKKEPGCSSI 608
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 126/256 (49%), Gaps = 6/256 (2%)
Query: 24 ITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPS 83
+ L + LEYAR +F+E+P N +W +I Y ++ F MV+ P+
Sbjct: 71 MAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPN 130
Query: 84 EITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLF 143
+ T + A + + Q +HG K + + V+N LI Y CG + SA K+F
Sbjct: 131 KYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGS-DVFVANSLIHCYFSCGDLDSACKVF 189
Query: 144 EDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGL 203
+++ K++VSW S+I+GF G +A+E F++M+ +K + VT + VL+AC+
Sbjct: 190 --TTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRN 247
Query: 204 VEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTL 263
+E G + +EE V ++ ++DM + G +E A+++ + E + V W T+
Sbjct: 248 LEFGRQVCS-YIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAM--EEKDNVTWTTM 304
Query: 264 LGACSFHGNVEMGERV 279
L + + E V
Sbjct: 305 LDGYAISEDYEAAREV 320
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 140/281 (49%), Gaps = 35/281 (12%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I G+L+ A +F + ++VVSW +I+G+ + + AL LF++M + E
Sbjct: 170 NSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMES-EDV 228
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+ S +T++ V A + ++ + + Y E+ N ++ ++N ++D Y KCG I A
Sbjct: 229 KASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNV-NLTLANAMLDMYTKCGSIEDAK 287
Query: 141 KLFEDI-----------------------------SVERKNLVSWTSIISGFAMHGMGKE 171
+LF+ + S+ +K++V+W ++IS + +G E
Sbjct: 288 RLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNE 347
Query: 172 AVENFERMQ-KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCL 230
A+ F +Q + +K N++T +S L+AC+ G +E G ++ +++ + + L
Sbjct: 348 ALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELG-RWIHSYIKKHGIRMNFHVTSAL 406
Query: 231 IDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
I M + G LE++ +V + + E +V VW ++G + HG
Sbjct: 407 IHMYSKCGDLEKSREVFNSV--EKRDVFVWSAMIGGLAMHG 445
>gi|357464703|ref|XP_003602633.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491681|gb|AES72884.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 647
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/330 (36%), Positives = 187/330 (56%), Gaps = 11/330 (3%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LF + E++ V+W M+ + ++ A +F EMP + VSW +I G+ + R A
Sbjct: 269 LFRSMVEKDAVSWTSMVVTYTRASRIDDACKVFNEMPVKYTVSWAALISGFVKNGRCYEA 328
Query: 68 LALFRRMVACEYTEPSEITILAVFPA-----IWQNGDVRNCQLIHGYGEKRGFNAFHIHV 122
L +F +M+ E P T ++V A + G +CQ+I G + N F+++V
Sbjct: 329 LEVFHQMIK-EGVLPRAQTFVSVLDACASEALIGRGKQVHCQIIRG---RSSDNLFNVYV 384
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
N L+D YAKCG + SA LFE + + K++VSW ++I+GFA +G G++++ F+RM +
Sbjct: 385 FNALMDMYAKCGDMKSAENLFE-MMIHVKDVVSWNTLITGFAQNGRGEDSLAVFDRMIES 443
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
++PN VTFL VL+AC+H GLV GL+ D M V P HY LID+LGR RLE+
Sbjct: 444 NIEPNHVTFLGVLSACNHAGLVNAGLELLDSMERRYGVKPKSNHYALLIDLLGRKNRLEE 503
Query: 243 AEKVASGIPSEITN-VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A + +P+EI+N + +W +LG C HGN+E+ + + +E G YV++ NI
Sbjct: 504 AMCLIEKVPNEISNHIAMWGAVLGGCRVHGNLELARKAAEALFALEPENTGRYVMLSNIY 563
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ D R+R V+ ER K P S +
Sbjct: 564 AASGRWSDTNRIRNVMKERGLKKEPAFSRI 593
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 147/313 (46%), Gaps = 38/313 (12%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K FD+LP + TWN +++ K G A LF+EMP RN+VS+ +I G TR
Sbjct: 134 KAFDDLPNKTTRTWNTLLSFYSKKGVFNQAYKLFDEMPQRNLVSYNSLISGLTRHEFHKE 193
Query: 67 ALALFRRMV-ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
A+ FR M E T++++ V+ + +HG GF ++ ++N
Sbjct: 194 AVKFFREMQNGVGGLMLDEFTLVSLVSNCSCLDTVKWLRQVHGVATIVGFRT-NLILNNA 252
Query: 126 LIDTYAKCG------CIF-------------------------SALKLFEDISVERKNLV 154
LID Y KCG C+F A K+F ++ V K V
Sbjct: 253 LIDAYGKCGEPNSSFCLFRSMVEKDAVSWTSMVVTYTRASRIDDACKVFNEMPV--KYTV 310
Query: 155 SWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKM 214
SW ++ISGF +G EA+E F +M K + P TF+SVL+AC+ L+ G + ++
Sbjct: 311 SWAALISGFVKNGRCYEALEVFHQMIKEGVLPRAQTFVSVLDACASEALIGRGKQVHCQI 370
Query: 215 V--EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
+ + L ++ + L+DM + G ++ AE + + + +VV W TL+ + +G
Sbjct: 371 IRGRSSDNLFNVYVFNALMDMYAKCGDMKSAENLFE-MMIHVKDVVSWNTLITGFAQNGR 429
Query: 273 VEMGERVTRKILE 285
E V +++E
Sbjct: 430 GEDSLAVFDRMIE 442
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 82/214 (38%), Gaps = 73/214 (34%)
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDIS-----------------------------V 148
F ++N LID Y+KCGC S K F+D+ +
Sbjct: 111 FETFLANGLIDLYSKCGCKESIHKAFDDLPNKTTRTWNTLLSFYSKKGVFNQAYKLFDEM 170
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV--LKPNRVTFLSVLNACS------- 199
++NLVS+ S+ISG H KEAV+ F MQ V L + T +S+++ CS
Sbjct: 171 PQRNLVSYNSLISGLTRHEFHKEAVKFFREMQNGVGGLMLDEFTLVSLVSNCSCLDTVKW 230
Query: 200 ----HGGLVEEGLK------------------------FFDKMVEECEVLPDIKHYGCLI 231
HG G + F MVE+ D + ++
Sbjct: 231 LRQVHGVATIVGFRTNLILNNALIDAYGKCGEPNSSFCLFRSMVEK-----DAVSWTSMV 285
Query: 232 DMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
RA R++ A KV + +P + T V W L+
Sbjct: 286 VTYTRASRIDDACKVFNEMPVKYT--VSWAALIS 317
>gi|218189594|gb|EEC72021.1| hypothetical protein OsI_04901 [Oryza sativa Indica Group]
Length = 589
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 189/325 (58%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD++P+R+LV WN MI G + G ++ AR LFEEMP RNV+SW+ +IDGY R N
Sbjct: 234 ELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNE 293
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL F+RM++C +P + + A Q G + + +H Y EK+ F + V L
Sbjct: 294 ALEFFQRMLSCG-IKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKV-LFDVVVQTAL 351
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y KCG + A +FE S+ +K++V+W +I G HG G +A++ F +M+
Sbjct: 352 IDMYVKCGRLDLAKLIFE--SMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPM 409
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ ++ L+VL +C+H GLV EGL F +M ++ + P ++HYG LID+LGRAGR++QA
Sbjct: 410 DDLSVLAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNT 469
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E T +W +LL +C H VE+ E ++ + G YVL+ NI A
Sbjct: 470 IETMPMEPTP-ELWGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGM 528
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ D R+R+++ K GRS++
Sbjct: 529 WDDVFRIRKLMSAEGMKKNIGRSVI 553
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 108/249 (43%), Gaps = 28/249 (11%)
Query: 34 EYARSLFE---EMPCRNVVSWTGIIDGYTRMNRSNGALALFR-RMVACEYTEPSEITILA 89
++A S+F E R+ W ++ + + L R R VA P T A
Sbjct: 65 DHADSVFAHLAEEASRHAFPWNTLVRLHAAASPRRSLLYFSRMRRVA---VAPDAYTFPA 121
Query: 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE 149
V A R ++HG + G +A + N LI Y + G S K+F D V
Sbjct: 122 VLKACGCAPGCRVGLVVHGEAVRTGLDA-DLFTRNALISFYCRIGDCRSGRKVF-DHGV- 178
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH-GGLVEEGL 208
++LVSW S+++G+ G A + F+ M+ + + ++ ++++ G V+
Sbjct: 179 -RDLVSWNSMVAGYVGCGEVDLAQDLFDEMR----QRDAFSWATMIDGYGEMAGGVDRAR 233
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
+ FD+M + D+ + +ID R GR+++A + +P NV+ W ++
Sbjct: 234 ELFDQMPDR-----DLVCWNSMIDGYARHGRMDEARVLFEEMPER--NVISWSIVID--- 283
Query: 269 FHGNVEMGE 277
G V GE
Sbjct: 284 --GYVRFGE 290
>gi|147810456|emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
Length = 516
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 124/320 (38%), Positives = 189/320 (59%), Gaps = 7/320 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E ++ N ++ + ++E A LFEEMP +V+W IID R A+ LF R
Sbjct: 183 EEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAWNTIIDCNVYCGRYKEAIELFFR 242
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M+ +P + T + A G++ + +H + G + VSN LID YAKC
Sbjct: 243 MLQSG-LKPDDATFVVTLSACAALGELDIGRRVHSCIDHTGLGNV-VSVSNSLIDMYAKC 300
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFL 192
G + +A ++F + + +N+VSW ++I G AMHG G EA+E F +M ++ + PN VTFL
Sbjct: 301 GVVEAAYEIFNKM--KGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEKLATPNEVTFL 358
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
VL ACSHGG+VEEG ++FD M + + P IKHYG ++D+LGRAG +E+A ++ +P
Sbjct: 359 GVLCACSHGGMVEEGRRYFDIMRRDYNIQPTIKHYGSMVDILGRAGLVEEAYRLIKSMPI 418
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312
E +N +VWRTLL AC HGN+E+ E+V + +LE+E + DYVL+ N+ A ++ R
Sbjct: 419 E-SNSIVWRTLLAACRVHGNLELAEQVRQXLLELEPDHSSDYVLLANMYASAGQWNKVXR 477
Query: 313 LRRVVDERNALK-FPGRSLV 331
+R+ + R K PG S +
Sbjct: 478 VRKSMHIRGVQKPKPGNSYI 497
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/317 (27%), Positives = 137/317 (43%), Gaps = 30/317 (9%)
Query: 14 ERNLVTWNVMIT--GLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALF 71
E+NL +I + + G ++YA +F ++ + W +I G R + A +
Sbjct: 80 EQNLFVMGKIIVFCAVSECGSMDYALRVFGKIENPDGFLWNTMIRGLGRTRQPEKAFEFY 139
Query: 72 RRM-VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTY 130
+RM V E + + L Q G + IH K G H+ V N L+ Y
Sbjct: 140 KRMQVKGEVLDNFTYSFLV--KVCGQLGSDLLGKQIHCNVLKHGLEE-HVFVRNTLVHMY 196
Query: 131 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVT 190
I +A LFE++ + LV+W +II G KEA+E F RM + LKP+ T
Sbjct: 197 GMFKDIEAATHLFEEMP--KSYLVAWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDAT 254
Query: 191 FLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG---------CLIDMLGRAGRLE 241
F+ L+AC+ G ++ G + V C I H G LIDM + G +E
Sbjct: 255 FVVTLSACAALGELDIG-----RRVHSC-----IDHTGLGNVVSVSNSLIDMYAKCGVVE 304
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A ++ + + N+V W T++ + HG+ + + K+LE E+ + V +L
Sbjct: 305 AAYEIFNKMKGR--NIVSWNTMILGLAMHGHGDEALELFSKMLE-EKLATPNEVTFLGVL 361
Query: 302 AGVWRYGDAERLRRVVD 318
G E RR D
Sbjct: 362 CACSHGGMVEEGRRYFD 378
>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
Length = 824
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 190/336 (56%), Gaps = 15/336 (4%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
+++ +LFD +P RN+ +WN M+TG + G L+ AR++F MP ++ VSW ++ Y++
Sbjct: 370 MMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQ 429
Query: 61 MNRSNGALALFRRMVAC-EYTEPSE----ITILAVFPAIWQNGDVRNCQLIHGYGEKRGF 115
+ S L LF+ M C E+ S ++ A A+ + + + GYG
Sbjct: 430 IGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYG----- 484
Query: 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
V N L+ Y KCG + A FE++ E +++VSW ++I+G+A HG GKEA+E
Sbjct: 485 --VGCFVGNALLAMYFKCGSMEEAHSAFEEM--EERDVVSWNTMIAGYARHGFGKEALEV 540
Query: 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
F+ M+K KP+ +T + VL ACSH GLVE+G+ +F M + V +HY C+ID+LG
Sbjct: 541 FDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLG 600
Query: 236 RAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV 295
RAGRL++A + +P E + +W LLGA H N E+G KI E+E G YV
Sbjct: 601 RAGRLDEAVNLMKDMPFE-PDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYV 659
Query: 296 LMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
L+ NI A ++ D +++R ++ ER K PG S +
Sbjct: 660 LLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWI 695
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 138/285 (48%), Gaps = 45/285 (15%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+++ K+F+++P+R++V+WN M++G + G++ AR LF+ P R+V +WT I+ GY +
Sbjct: 278 IEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQ- 336
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG------- 114
NG L +R VF A+ V ++ Y ++R
Sbjct: 337 ---NGMLEEAKR----------------VFDAMPDKNAVSWNAMMAAYVQRRMMEEAKEL 377
Query: 115 FNAF---HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKE 171
F+A ++ N ++ YA+ G + A +F + +K+ VSW ++++ ++ G +E
Sbjct: 378 FDAMPCRNVASWNTMLTGYAQAGMLDEARAIFG--MMPQKDAVSWAAMLAAYSQIGFSEE 435
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC-- 229
++ F+ M + NR F VL+ C+ +E G++ ++++ + GC
Sbjct: 436 TLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGV------GCFV 489
Query: 230 ---LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
L+ M + G +E+A + E +VV W T++ + HG
Sbjct: 490 GNALLAMYFKCGSMEEAHSAFEEM--EERDVVSWNTMIAGYARHG 532
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 129/267 (48%), Gaps = 23/267 (8%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D LFDE+P ++ V++NVMI+ G + AR F+ P ++ VSW G++ Y R
Sbjct: 185 LADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRN 244
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R A LF TE I+ A+ Q + Q + +R ++
Sbjct: 245 GRIQEARELFD-----SRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSW--- 296
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
N ++ YA+ G + A +LF+ + +++ +WT+I+SG+A +GM +EA F+ M
Sbjct: 297 --NTMVSGYARRGDMAEARRLFDVAPI--RDVFTWTAIVSGYAQNGMLEEAKRVFDAMP- 351
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
N V++ +++ A ++EE + FD M C ++ + ++ +AG L+
Sbjct: 352 ---DKNAVSWNAMMAAYVQRRMMEEAKELFDAM--PCR---NVASWNTMLTGYAQAGMLD 403
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACS 268
+A + +P + + V W +L A S
Sbjct: 404 EARAIFGMMPQK--DAVSWAAMLAAYS 428
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 120/270 (44%), Gaps = 29/270 (10%)
Query: 13 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFR 72
P+ ++ N IT ++ G + A LF MP R+ ++ ++ GY R AL+ FR
Sbjct: 103 PDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFR 162
Query: 73 RMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS---NCLIDT 129
+ P + + A+ + + + + + F+ + S N +I +
Sbjct: 163 SI-----PRPDSFSYNTLLHALGVSSSLADVRAL--------FDEMPVKDSVSYNVMISS 209
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
+A G + A F D++ E K+ VSW +++ + +G +EA E F+ + + +
Sbjct: 210 HANHGLVSLARHYF-DLAPE-KDAVSWNGMLAAYVRNGRIQEARELFDSRTEW----DAI 263
Query: 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
++ +++ +EE K F+KM + D+ + ++ R G + +A ++
Sbjct: 264 SWNALMAGYVQRSQIEEAQKMFNKMPQR-----DVVSWNTMVSGYARRGDMAEARRLFDV 318
Query: 250 IPSEITNVVVWRTLLGACSFHGNVEMGERV 279
P I +V W ++ + +G +E +RV
Sbjct: 319 AP--IRDVFTWTAIVSGYAQNGMLEEAKRV 346
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/327 (36%), Positives = 195/327 (59%), Gaps = 9/327 (2%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LF+++P RN+V+W+ M+ G K G+++ AR LF++MP +N+V WT +I GY +
Sbjct: 235 ELFEKMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKD 294
Query: 67 ALALFRRM--VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
A+ L+ +M ++ + + I+IL+ A +G + + +H E+ F VSN
Sbjct: 295 AINLYNQMEEAGLKFDDGTVISILS---ACAVSGLLGLGKRVHASIERTRFKC-STPVSN 350
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LID YAKCG + +AL +F + RK++VSW +II G AMHG G++A++ F RM+
Sbjct: 351 ALIDMYAKCGSLENALSIFHGMV--RKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGF 408
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
P++VTF+ VL AC+H G V+EGL +F M + V P+++HYGC++D+LGR GRL++A
Sbjct: 409 VPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAF 468
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
++ +P E N ++W TLLGAC H + E V ++++ E G+ ++ NI A
Sbjct: 469 RLVHSMPLE-PNAIIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNLSMLSNIYAAA 527
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
+ + +R + + K G S +
Sbjct: 528 GDWDNFANIRLRMKSTSIQKPSGGSSI 554
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 127/274 (46%), Gaps = 19/274 (6%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW 95
AR +FE M R+ VSW +I G ++ A LF M E S TIL
Sbjct: 171 ARKVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEMP--ERDTVSWNTIL------- 221
Query: 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 155
+G V+ ++ + A ++ + ++ Y+K G + A LF+ + V KNLV
Sbjct: 222 -DGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPV--KNLVP 278
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215
WT +ISG+A G+ K+A+ + +M++ LK + T +S+L+AC+ GL+ G K +
Sbjct: 279 WTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLG-KRVHASI 337
Query: 216 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEM 275
E LIDM + G LE A + G+ + +VV W ++ + HG+
Sbjct: 338 ERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRK--DVVSWNAIIQGLAMHGH--- 392
Query: 276 GERVTRKILEME-RGYGGDYVLMYNILAGVWRYG 308
GE+ + M+ G+ D V +L G
Sbjct: 393 GEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAG 426
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 114/249 (45%), Gaps = 31/249 (12%)
Query: 32 ELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM-----VACEYTEPSEIT 86
++ A ++F ++ +V+ + +I + R + A ++F M A +T P
Sbjct: 64 QMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYP--FL 121
Query: 87 ILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC--IFSALKLFE 144
+ A +W VR ++IH EK GF I V N LID+Y KCG + +A K+FE
Sbjct: 122 LKACSGKVW----VRVVEMIHAQVEKMGF-CLDIFVPNSLIDSYFKCGLDGVAAARKVFE 176
Query: 145 DISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR--VTFLSVLNACSHGG 202
++ ++ VSW S+I G G EA F+ M P R V++ ++L+ G
Sbjct: 177 VMA--ERDTVSWNSMIGGLVKVGELGEARRLFDEM------PERDTVSWNTILDGYVKAG 228
Query: 203 LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
+ + F+KM ++ + ++ +AG ++ A + +P + N+V W
Sbjct: 229 EMNAAFELFEKMPAR-----NVVSWSTMVLGYSKAGDMDMARILFDKMP--VKNLVPWTI 281
Query: 263 LLGACSFHG 271
++ + G
Sbjct: 282 MISGYAEKG 290
>gi|115441047|ref|NP_001044803.1| Os01g0848300 [Oryza sativa Japonica Group]
gi|15408890|dbj|BAB64281.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113534334|dbj|BAF06717.1| Os01g0848300 [Oryza sativa Japonica Group]
gi|125572632|gb|EAZ14147.1| hypothetical protein OsJ_04076 [Oryza sativa Japonica Group]
Length = 660
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 185/313 (59%), Gaps = 11/313 (3%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVAC-EY 79
+I K G + YA S+F MP RNVVSWT +I Y + R A+ LF+ MVA E
Sbjct: 224 TTLIDCYAKLGIVSYAESVFATMPERNVVSWTAMIGCYAKNERPGDAILLFQEMVASDED 283
Query: 80 TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSA 139
P+ +TI+ + A + +L+H Y +RGF++ + V N L+ Y KCGC+ +
Sbjct: 284 LVPNSVTIVCILHAFAGVNALGQGKLLHAYILRRGFDSL-VSVLNALMAMYMKCGCLEAG 342
Query: 140 LKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS 199
+F D+ RK++VSW ++ISG+ MHG G EAV+ FE M ++ + PN +TF+SVL ACS
Sbjct: 343 RHIF-DLIGHRKDVVSWNTLISGYGMHGFGHEAVQVFEDMTQMGVSPNIITFISVLGACS 401
Query: 200 HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI---PSEITN 256
H GLV+EG + F+ MV+ V P +HY C++D+LGRAG L++A ++ G+ PS
Sbjct: 402 HAGLVDEGKRLFESMVDY-NVTPRAEHYACMVDLLGRAGHLDEAVELIQGMHIRPSP--- 457
Query: 257 VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRV 316
VW +LLGAC H +VE E ++ ++E G+YVL+ +I A + + L+ +
Sbjct: 458 -QVWGSLLGACRIHRHVEYAEMACSQLFDLEPRNAGNYVLLADIYARAKLHSEVGVLKDL 516
Query: 317 VDERNALKFPGRS 329
++E K PG S
Sbjct: 517 LEEHALEKVPGCS 529
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 128/305 (41%), Gaps = 48/305 (15%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM-------V 75
+I GEL AR +F+E P +++ W ++ + ALA M
Sbjct: 120 LIDAYASLGELPAARQVFDEAPVKSIFVWNALLKALALADHGEEALARLADMGRLRVPVD 179
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
+ Y + I A + + VR IH + +RG+ H HV+ LID YAK G
Sbjct: 180 SYSYAHGLKACIAASTSHVPASALVRE---IHAHAVRRGYG-LHTHVATTLIDCYAKLGI 235
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM--QKVVLKPNRVTFLS 193
+ A +F ++ +N+VSWT++I +A + +A+ F+ M L PN VT +
Sbjct: 236 VSYAESVFA--TMPERNVVSWTAMIGCYAKNERPGDAILLFQEMVASDEDLVPNSVTIVC 293
Query: 194 VL------NACSHGGLVEEGL--KFFDKMVEECEVL-----------------------P 222
+L NA G L+ + + FD +V L
Sbjct: 294 ILHAFAGVNALGQGKLLHAYILRRGFDSLVSVLNALMAMYMKCGCLEAGRHIFDLIGHRK 353
Query: 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE--ITNVVVWRTLLGACSFHGNVEMGERVT 280
D+ + LI G G +A +V + N++ + ++LGACS G V+ G+R+
Sbjct: 354 DVVSWNTLISGYGMHGFGHEAVQVFEDMTQMGVSPNIITFISVLGACSHAGLVDEGKRLF 413
Query: 281 RKILE 285
+++
Sbjct: 414 ESMVD 418
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 14/151 (9%)
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+S LID YA G + +A ++F++ V K++ W +++ A+ G+EA+ M +
Sbjct: 116 LSTRLIDAYASLGELPAARQVFDEAPV--KSIFVWNALLKALALADHGEEALARLADMGR 173
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG-------CLIDML 234
+ + + ++ L AC +V E + YG LID
Sbjct: 174 LRVPVDSYSYAHGLKACIAASTSHVPAS---ALVREIHAHAVRRGYGLHTHVATTLIDCY 230
Query: 235 GRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
+ G + AE V + +P NVV W ++G
Sbjct: 231 AKLGIVSYAESVFATMPER--NVVSWTAMIG 259
>gi|124360491|gb|ABN08501.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 575
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/338 (35%), Positives = 201/338 (59%), Gaps = 25/338 (7%)
Query: 2 LKDGSKLFDEL---PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGY 58
L+ K+F++L R+ V WN MI+ + G+L A+ LF++MP R+ VSW +I GY
Sbjct: 247 LEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGY 306
Query: 59 TRMNRSNGALALFRRMVACEYT-EPSEITILAVFPAIWQNGDVRNCQLIHGYGE------ 111
T+ S A+ LF M++ E + +P E+T+++VF A G++ G G
Sbjct: 307 TQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGEL-------GLGNWAVSIL 359
Query: 112 KRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKE 171
K I V N LI+ Y++CG + A+ +F++++ ++LVS+ ++ISGFA HG G E
Sbjct: 360 KVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMAT--RDLVSYNTLISGFAEHGHGME 417
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLI 231
++E +M++ ++P+R+T++++L ACSH GL++EG + F+ + PD+ HY C+I
Sbjct: 418 SIELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQRLFESI-----KFPDVDHYACMI 472
Query: 232 DMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG 291
DMLGRAGRLE+A K+ +P E + ++ +LL A S H VE+GE K+ ++E
Sbjct: 473 DMLGRAGRLEEAMKLIQSMPME-PHAGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNS 531
Query: 292 GDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
G+Y L+ NI A R+ + +++R + ++ K G S
Sbjct: 532 GNYALLSNIYASAGRWKEGDKVRDTMRKQGVKKTTGLS 569
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 99/364 (27%), Positives = 167/364 (45%), Gaps = 50/364 (13%)
Query: 3 KDGSKLF----DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGY 58
++ S LF D+ RN++TW MITG K G L+ AR F++MP R+VVSW ++ GY
Sbjct: 110 EEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGY 169
Query: 59 TRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGD-VRNCQLIHGYGEKRGFNA 117
+ + LF M++ +P E T V + GD + ++ +K GF
Sbjct: 170 AQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRP 229
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISV----------------------------- 148
+ V L+D +AKCG + +A K+FE + V
Sbjct: 230 NYF-VKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLF 288
Query: 149 ---ERKNLVSWTSIISGFAMHGMGKEAVENFERM--QKVVLKPNRVTFLSVLNACSHGGL 203
+++ VSW S+I+G+ +G +A++ FE M + KP+ VT +SV +AC H G
Sbjct: 289 DKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLG- 347
Query: 204 VEEGL-KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
E GL + +++ + I Y LI+M R G ++ A + + + ++V + T
Sbjct: 348 -ELGLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATR--DLVSYNT 404
Query: 263 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNA 322
L+ + HG+ + K+ E G D + IL G + +R+ + +
Sbjct: 405 LISGFAEHGHGMESIELLSKM--KEDGIEPDRITYIAILTACSHAGLLDEGQRLFE---S 459
Query: 323 LKFP 326
+KFP
Sbjct: 460 IKFP 463
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 132/308 (42%), Gaps = 47/308 (15%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+R+ N ++ K+G +E+AR LF+EMP R V W +I GY + A LF
Sbjct: 59 DRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHV 118
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M E + RN + +I +AK
Sbjct: 119 MGDQEIS--------------------RN-----------------VITWTTMITGHAKK 141
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFL 192
G + +A F+ + +++VSW +++SG+A G +E + F M ++P+ T+
Sbjct: 142 GNLKTARMYFDKMP--ERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWA 199
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP- 251
+V+++CS G K+ ++ P+ L+DM + G LE A K+ +
Sbjct: 200 TVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGV 259
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
+ + V W ++ A + G++ + + K+ + D V +++AG + G++
Sbjct: 260 YKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQR------DTVSWNSMIAGYTQNGESF 313
Query: 312 RLRRVVDE 319
+ ++ +E
Sbjct: 314 KAIKLFEE 321
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 119/265 (44%), Gaps = 25/265 (9%)
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
++LF+ M+ + +I A F ++ L + K G++ H +V N ++
Sbjct: 16 VSLFKHML-----QHCDIKPNASFYSVMMKSAGSESMLFLAHVLKSGYDRDH-YVRNGIL 69
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
YAK G I A KLF+++ + + W +ISG+ G +EA F M + N
Sbjct: 70 GIYAKYGPIEFARKLFDEMP--DRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISRN 127
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+T+ +++ + G ++ +FDKM E V + ++ + G E+ ++
Sbjct: 128 VITWTTMITGHAKKGNLKTARMYFDKMPERSVV-----SWNAMLSGYAQGGAPEETIRLF 182
Query: 248 SGI-------PSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
+ + P E T W T++ +CS G+ + E + RK L+ + G+ +Y + +
Sbjct: 183 NDMLSPGNVQPDETT----WATVISSCSSLGDPCLSESIVRK-LDDKVGFRPNYFVKTAL 237
Query: 301 LAGVWRYGDAERLRRVVDERNALKF 325
L + G+ E ++ ++ K+
Sbjct: 238 LDMHAKCGNLEAAHKIFEQLGVYKY 262
>gi|357507465|ref|XP_003624021.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499036|gb|AES80239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 632
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/338 (35%), Positives = 201/338 (59%), Gaps = 25/338 (7%)
Query: 2 LKDGSKLFDEL---PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGY 58
L+ K+F++L R+ V WN MI+ + G+L A+ LF++MP R+ VSW +I GY
Sbjct: 304 LEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGY 363
Query: 59 TRMNRSNGALALFRRMVACEYT-EPSEITILAVFPAIWQNGDVRNCQLIHGYGE------ 111
T+ S A+ LF M++ E + +P E+T+++VF A G++ G G
Sbjct: 364 TQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGEL-------GLGNWAVSIL 416
Query: 112 KRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKE 171
K I V N LI+ Y++CG + A+ +F++++ ++LVS+ ++ISGFA HG G E
Sbjct: 417 KVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMAT--RDLVSYNTLISGFAEHGHGME 474
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLI 231
++E +M++ ++P+R+T++++L ACSH GL++EG + F+ + PD+ HY C+I
Sbjct: 475 SIELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQRLFESI-----KFPDVDHYACMI 529
Query: 232 DMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG 291
DMLGRAGRLE+A K+ +P E + ++ +LL A S H VE+GE K+ ++E
Sbjct: 530 DMLGRAGRLEEAMKLIQSMPME-PHAGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNS 588
Query: 292 GDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
G+Y L+ NI A R+ + +++R + ++ K G S
Sbjct: 589 GNYALLSNIYASAGRWKEGDKVRDTMRKQGVKKTTGLS 626
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 170/365 (46%), Gaps = 52/365 (14%)
Query: 3 KDGSKLF----DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGY 58
++ S LF D+ RN++TW MITG K G L+ AR F++MP R+VVSW ++ GY
Sbjct: 167 EEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGY 226
Query: 59 TRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGD-VRNCQLIHGYGEKRGFNA 117
+ + LF M++ +P E T V + GD + ++ +K GF
Sbjct: 227 AQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRP 286
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISV----------------------------- 148
+ V L+D +AKCG + +A K+FE + V
Sbjct: 287 NYF-VKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLF 345
Query: 149 ---ERKNLVSWTSIISGFAMHGMGKEAVENFERM--QKVVLKPNRVTFLSVLNACSHGGL 203
+++ VSW S+I+G+ +G +A++ FE M + KP+ VT +SV +AC H G
Sbjct: 346 DKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLG- 404
Query: 204 VEEGL-KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
E GL + +++ + I Y LI+M R G ++ A + + + ++V + T
Sbjct: 405 -ELGLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATR--DLVSYNT 461
Query: 263 LLGACSFHGN-VEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321
L+ + HG+ +E E +++ E G D + IL G + +R+ +
Sbjct: 462 LISGFAEHGHGMESIELLSKM---KEDGIEPDRITYIAILTACSHAGLLDEGQRLFE--- 515
Query: 322 ALKFP 326
++KFP
Sbjct: 516 SIKFP 520
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 132/308 (42%), Gaps = 47/308 (15%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+R+ N ++ K+G +E+AR LF+EMP R V W +I GY + A LF
Sbjct: 116 DRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHV 175
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M E + RN + +I +AK
Sbjct: 176 MGDQEIS--------------------RN-----------------VITWTTMITGHAKK 198
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFL 192
G + +A F+ + +++VSW +++SG+A G +E + F M ++P+ T+
Sbjct: 199 GNLKTARMYFDKMP--ERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWA 256
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP- 251
+V+++CS G K+ ++ P+ L+DM + G LE A K+ +
Sbjct: 257 TVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGV 316
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
+ + V W ++ A + G++ + + K+ + D V +++AG + G++
Sbjct: 317 YKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQR------DTVSWNSMIAGYTQNGESF 370
Query: 312 RLRRVVDE 319
+ ++ +E
Sbjct: 371 KAIKLFEE 378
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 133/299 (44%), Gaps = 26/299 (8%)
Query: 35 YARSLFEEMPCRNVVSWTGIIDGYTRMN-RSNGALALFRRMVACEYTEPSEITILAVFPA 93
Y +F +V +T ++ Y+++ S ++LF+ M+ + +I A F +
Sbjct: 39 YTCHIFHAATHPDVRVFTFMLKYYSQIGVHSQVFVSLFKHML-----QHCDIKPNASFYS 93
Query: 94 IWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 153
+ L + K G++ H +V N ++ YAK G I A KLF+++ + +
Sbjct: 94 VMMKSAGSESMLFLAHVLKSGYDRDH-YVRNGILGIYAKYGPIEFARKLFDEMP--DRTV 150
Query: 154 VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDK 213
W +ISG+ G +EA F M + N +T+ +++ + G ++ +FDK
Sbjct: 151 ADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDK 210
Query: 214 MVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI-------PSEITNVVVWRTLLGA 266
M E V + ++ + G E+ ++ + + P E T W T++ +
Sbjct: 211 MPERSVV-----SWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETT----WATVISS 261
Query: 267 CSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKF 325
CS G+ + E + RK L+ + G+ +Y + +L + G+ E ++ ++ K+
Sbjct: 262 CSSLGDPCLSESIVRK-LDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKY 319
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/302 (38%), Positives = 192/302 (63%), Gaps = 6/302 (1%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G++ A +F++MP +++V+W +I+G+ + ALAL+ M + + +P TI+++
Sbjct: 170 GDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNS-KGIKPDGFTIVSL 228
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A + G + + +H Y K G ++H SN L+D YA+CG + A LF+++
Sbjct: 229 LSACAKIGALTLGKRVHVYMIKVGLTR-NLHSSNVLLDLYARCGRVEEAKTLFDEMV--D 285
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFLSVLNACSHGGLVEEGLK 209
KN VSWTS+I G A++G GKEA+E F+ M+ L P +TF+ +L ACSH G+V+EG +
Sbjct: 286 KNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFE 345
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
+F +M EE ++ P I+H+GC++D+L RAG++++A + +P + NVV+WRTLLGAC+
Sbjct: 346 YFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQ-PNVVIWRTLLGACTV 404
Query: 270 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
HG+ ++ E +IL++E + GDYVL+ N+ A R+ D +++R+ + K PG S
Sbjct: 405 HGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHS 464
Query: 330 LV 331
LV
Sbjct: 465 LV 466
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 124/241 (51%), Gaps = 9/241 (3%)
Query: 33 LEYARSLFE--EMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
+ YA +F E P NV W +I GY + S A +L+R M EP T +
Sbjct: 69 MSYAHKVFSKIEKPI-NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFL 127
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A+ DVR + IH + GF + I+V N L+ YA CG + SA K+F+ +
Sbjct: 128 IKAVTTMADVRLGETIHSVVIRSGFGSL-IYVQNSLLHLYANCGDVASAYKVFDKMP--E 184
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
K+LV+W S+I+GFA +G +EA+ + M +KP+ T +S+L+AC+ G + G +
Sbjct: 185 KDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRV 244
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
M+ + + ++ L+D+ R GR+E+A+ + + + N V W +L+ + +
Sbjct: 245 HVYMI-KVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDK--NSVSWTSLIVGLAVN 301
Query: 271 G 271
G
Sbjct: 302 G 302
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 25/185 (13%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
RNL + NV++ + G +E A++LF+EM +N VSWT +I G A+ LF+ M
Sbjct: 255 RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYM 314
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF-----------HIHVS 123
+ E P EIT + + A G V K GF F I
Sbjct: 315 ESTEGLLPCEITFVGILYACSHCGMV-----------KEGFEYFRRMREEYKIEPRIEHF 363
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
C++D A+ G + A + + + ++ N+V W +++ +HG A F R+Q +
Sbjct: 364 GCMVDLLARAGQVKKAYEYIKSMPMQ-PNVVIWRTLLGACTVHGDSDLA--EFARIQILQ 420
Query: 184 LKPNR 188
L+PN
Sbjct: 421 LEPNH 425
>gi|297733959|emb|CBI15206.3| unnamed protein product [Vitis vinifera]
Length = 416
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 124/320 (38%), Positives = 190/320 (59%), Gaps = 7/320 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E ++ N ++ + ++E A LFEEMP +V+W IID R A+ LF R
Sbjct: 83 EEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAWNTIIDCNVYCGRYKEAIELFFR 142
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M+ +P + T + A G++ + +H + G + VSN LID YAKC
Sbjct: 143 MLQSG-LKPDDATFVVTLSACAALGELDIGRRVHSCIDHTGLGNV-VSVSNSLIDMYAKC 200
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFL 192
G + +A ++F + + +N+VSW ++I G AMHG G EA+E F +M ++ + PN VTFL
Sbjct: 201 GVVEAAYEIFNKM--KGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEKLATPNEVTFL 258
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
VL ACSHGG+VEEG ++FD M + + P IKHYG ++D+LGRAG +E+A ++ +P
Sbjct: 259 GVLCACSHGGMVEEGRRYFDIMRRDYNIQPTIKHYGSMVDILGRAGLVEEAYRLIKSMPI 318
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312
E +N +VWRTLL AC HGN+E+ E+V +++LE+E + DYVL+ N+ A ++ R
Sbjct: 319 E-SNSIVWRTLLAACRVHGNLELAEQVRQQLLELEPDHSSDYVLLANMYASAGQWNKVVR 377
Query: 313 LRRVVDERNALK-FPGRSLV 331
+R+ + R K PG S +
Sbjct: 378 VRKSMHIRGVQKPKPGNSYI 397
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 127/300 (42%), Gaps = 36/300 (12%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM-----VACEYTEPSEITI 87
++YA +F ++ + W +I G R + A ++RM V +T + +
Sbjct: 1 MDYALRVFGKIENPDGFLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLVKV 60
Query: 88 LAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS 147
+ + L HG E H+ V N L+ Y I +A LFE++
Sbjct: 61 CGQLGSDLLGKQIHCNVLKHGLEE-------HVFVRNTLVHMYGMFKDIEAATHLFEEMP 113
Query: 148 VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEG 207
+ LV+W +II G KEA+E F RM + LKP+ TF+ L+AC+ G ++ G
Sbjct: 114 --KSYLVAWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVTLSACAALGELDIG 171
Query: 208 LKFFDKMVEECEVLPDIKHYG---------CLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
+ V C I H G LIDM + G +E A ++ + + N+V
Sbjct: 172 -----RRVHSC-----IDHTGLGNVVSVSNSLIDMYAKCGVVEAAYEIFNKMKGR--NIV 219
Query: 259 VWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVD 318
W T++ + HG+ + + K+LE E+ + V +L G E RR D
Sbjct: 220 SWNTMILGLAMHGHGDEALELFSKMLE-EKLATPNEVTFLGVLCACSHGGMVEEGRRYFD 278
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/314 (39%), Positives = 188/314 (59%), Gaps = 9/314 (2%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N I K G++E A LFE + C++VVSW +I GYT MN AL LF+ M+ +
Sbjct: 255 NAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGES 314
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR---GFNAFHIHVSNCLIDTYAKCGCIF 137
P+++T+L+V PA G + + IH Y +KR N + S LID YAKCG I
Sbjct: 315 -PNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTS--LIDMYAKCGDIE 371
Query: 138 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197
+A ++F S+ K+L SW ++I GFAMHG A + F RM+K ++P+ +T + +L+A
Sbjct: 372 AAHQVFN--SMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSA 429
Query: 198 CSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNV 257
CSH GL++ G F + ++ + P ++HYGC+ID+LG AG ++AE++ +P E +
Sbjct: 430 CSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPME-PDG 488
Query: 258 VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVV 317
V+W +LL AC HGN+E+ E +K++E+E G YVL+ NI A R+ D R+R V+
Sbjct: 489 VIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVL 548
Query: 318 DERNALKFPGRSLV 331
+ + K PG S +
Sbjct: 549 NGKGMKKVPGCSSI 562
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 143/274 (52%), Gaps = 12/274 (4%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+D K+FD +R++V+ +ITG G++ AR +F+ + R+VVSW +I GY
Sbjct: 134 LEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVEN 193
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY-GEKRGFNAFHI 120
AL LF+ M+ P E T+++V A Q+G + + IH + GF + +
Sbjct: 194 CGYEEALELFKEMMRTN-VRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGS-SL 251
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+ N I Y+KCG + A LFE +S K++VSW ++I G+ + KEA+ F+ M
Sbjct: 252 KIVNAFIGLYSKCGDVEIASGLFEGLSC--KDVVSWNTLIGGYTHMNLYKEALLLFQEML 309
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGL---KFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
+ PN VT LSVL AC+H G ++ G + DK ++ ++ LIDM +
Sbjct: 310 RSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALR--TSLIDMYAKC 367
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
G +E A +V + + + ++ W ++ + HG
Sbjct: 368 GDIEAAHQVFNSMMHK--SLSSWNAMIFGFAMHG 399
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 127/271 (46%), Gaps = 32/271 (11%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYT--RMNRSN 65
+F+ E NL+ WN M+ GL +L ++ M VS + + YT + +S
Sbjct: 39 VFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRM-----VSXGHVPNAYTFPFLLKSC 93
Query: 66 GALALFRR---------MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN 116
F + CE + ++++++ +NG + + + + +R
Sbjct: 94 AKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYA---RNGRLEDARKVFDXSSQRD-- 148
Query: 117 AFHIHVSNC--LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVE 174
V +C LI YA G + SA K+F+ I+ +++VSW ++I+G+ + +EA+E
Sbjct: 149 -----VVSCTALITGYASRGDVRSARKVFDXIT--ERDVVSWNAMITGYVENCGYEEALE 201
Query: 175 NFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDML 234
F+ M + ++P+ T +SVL+AC+ G +E G + + + +K I +
Sbjct: 202 LFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLY 261
Query: 235 GRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
+ G +E A + G+ + +VV W TL+G
Sbjct: 262 SKCGDVEIASGLFEGLSCK--DVVSWNTLIG 290
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 7/148 (4%)
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198
A+ +FE + + NL+ W +++ G A +E + RM PN TF +L +C
Sbjct: 36 AVSVFE--TXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSC 93
Query: 199 SHGGLVEEGLKFFDKMVE-ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNV 257
+ EEG + ++++ CE+ D + LI M R GRLE A KV S +V
Sbjct: 94 AKSKTFEEGRQIHAQVMKLGCEL--DRYAHTSLISMYARNGRLEDARKVFDX--SSQRDV 149
Query: 258 VVWRTLLGACSFHGNVEMGERVTRKILE 285
V L+ + G+V +V I E
Sbjct: 150 VSCTALITGYASRGDVRSARKVFDXITE 177
>gi|255541938|ref|XP_002512033.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549213|gb|EEF50702.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 319
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/324 (36%), Positives = 192/324 (59%), Gaps = 9/324 (2%)
Query: 12 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALF 71
+PERN +TWN MITG + G ++ AR+ FEEMP R+V SW+ +I Y R + L LF
Sbjct: 1 MPERNTITWNTMITGYSRSGNIDKARAFFEEMPLRDVGSWSAMITAYINHGRWDRGLLLF 60
Query: 72 RRMVACEYTEPSEITILAVFPAIWQNG--DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDT 129
R M+ +P ++T+ V G + + HG+ K + ++ + L+D
Sbjct: 61 REMMTNSELKPDQVTVGTVLSGCTHMGFLGLLVGKSAHGFIMKNRWE-LNVEIGTVLVDM 119
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
Y KCG + +A+++F D+ ER N+++WT++I G A HG +E + F MQ+ ++PN +
Sbjct: 120 YVKCGYLKNAIRVF-DLMKER-NVMTWTALICGAAQHGYSEETLSLFNMMQEAKIRPNEL 177
Query: 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
TF +LN C+H GLVEEG K+F +M+EE + I+HYGC++D+ G+AG L++A V
Sbjct: 178 TFTGILNVCAHSGLVEEGKKYF-RMIEEYGLERRIQHYGCMVDLFGKAGLLDEAYNVIKT 236
Query: 250 IPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER--GYGGDYVLMYNILAGVWRY 307
+ E NVV+W + L AC H +M ERV ++L++ + GG Y L+ ++ ++
Sbjct: 237 MKVE-NNVVIWGSFLSACKEHKKFDMAERVIEQVLKVIKPENDGGIYTLVCDLYTSNEKW 295
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
DAER+R+++ +N K G S +
Sbjct: 296 DDAERVRKLMLNQNVRKARGSSFI 319
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 75/191 (39%), Gaps = 42/191 (21%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
+LK+ ++FD + ERN++TW +I G + G E SLF M +
Sbjct: 125 YLKNAIRVFDLMKERNVMTWTALICGAAQHGYSEETLSLFNMMQEAKI------------ 172
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDV----RNCQLIHGYGEKRGFN 116
P+E+T + +G V + ++I YG +R
Sbjct: 173 --------------------RPNELTFTGILNVCAHSGLVEEGKKYFRMIEEYGLER--- 209
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
I C++D + K G + A + + + VE N+V W S +S H A
Sbjct: 210 --RIQHYGCMVDLFGKAGLLDEAYNVIKTMKVE-NNVVIWGSFLSACKEHKKFDMAERVI 266
Query: 177 ERMQKVVLKPN 187
E++ KV+ N
Sbjct: 267 EQVLKVIKPEN 277
>gi|297824523|ref|XP_002880144.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325983|gb|EFH56403.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 555
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/336 (35%), Positives = 202/336 (60%), Gaps = 11/336 (3%)
Query: 1 FLKDGS-----KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGII 55
F+K G +LFDE+ + ++TW MI G +++ AR LF+ MP RN+VSW +I
Sbjct: 186 FVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNSNDIDSARKLFDAMPERNLVSWNTMI 245
Query: 56 DGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF 115
GY + + A+ LF+ M A +P ++TIL+V PAI G + + H + +++
Sbjct: 246 GGYCQNKQPQEAIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKNL 305
Query: 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
+ + V ++D Y+KCG I A ++F+++ K + SW ++I G+A++G A++
Sbjct: 306 DK-KVKVCTAILDMYSKCGEIEKAKRIFDEMP--EKQVASWNAMIHGYALNGNAHAALDL 362
Query: 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
F M K KP+ +T L+V++AC+HGGLVEEG K+F +M+ + + I+HYGC++D+LG
Sbjct: 363 FLTMAKEE-KPDEITMLAVISACNHGGLVEEGRKWF-QMMRKFGLNAKIEHYGCMVDLLG 420
Query: 236 RAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV 295
RAG L+QAE + + +P + N ++ + L AC + ++E ER+ +K +E+E G+YV
Sbjct: 421 RAGNLKQAEHLITNMPFK-PNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYV 479
Query: 296 LMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
L+ N+ A R+ D ++ ++ + A K G SL+
Sbjct: 480 LLRNLYAADKRWDDFGMVKNMMRKNEAKKEVGCSLI 515
>gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays]
Length = 611
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/302 (37%), Positives = 178/302 (58%), Gaps = 4/302 (1%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEY-TEPSEITILA 89
G+ + AR LF+EMP R+ V+W +I Y R R+ AL LF M + +EP ++T +
Sbjct: 184 GDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFEEMRGKDSESEPDDVTCIL 243
Query: 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE 149
+ A G + + + Y E+ G+ + V N LI Y +CGC+ A ++F
Sbjct: 244 LLQACSSLGALDFGEQVWAYAEEHGYGG-ELKVRNSLITMYLRCGCVDKAYRVFS--GTP 300
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
+K++V+WT++ISG A +G G +A+ FE M + + P+ TF VL+ACSH GLV+EG +
Sbjct: 301 QKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFR 360
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
FFD M E + P+++HYGC++D++GRAG L++A + + + +WRTLLGAC
Sbjct: 361 FFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRI 420
Query: 270 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
HG+V++GERV ++E++ GDYVL+ N A V + +R+++ E PG +
Sbjct: 421 HGHVDLGERVIGNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEIRKLMQEEGIQTTPGCT 480
Query: 330 LV 331
V
Sbjct: 481 TV 482
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 22/168 (13%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +IT ++ G ++ A +F P ++VV+WT +I G N A+++F M+ +
Sbjct: 277 NSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSD-V 335
Query: 81 EPSEITILAVFPAIWQNG---------DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYA 131
P E T V A +G D+ C+ YG K + C++D
Sbjct: 336 APDEQTFTGVLSACSHSGLVDEGFRFFDMMRCE----YGLKPNVRHY-----GCIVDLMG 386
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKEAVENF 176
+ G + A + + + W +++ +HG +G+ + N
Sbjct: 387 RAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVIGNL 434
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVV----SWTGIIDGYTRMN 62
++F P++++VTW MI+GL G A S+FEEM +V ++TG++ +
Sbjct: 294 RVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSG 353
Query: 63 RSNGALALFRRMVACEY 79
+ F M+ CEY
Sbjct: 354 LVDEGFRFF-DMMRCEY 369
>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 462
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/302 (38%), Positives = 192/302 (63%), Gaps = 6/302 (1%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G++ A +F++MP +++V+W +I+G+ + ALAL+ M + + +P TI+++
Sbjct: 37 GDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNS-KGIKPDGFTIVSL 95
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A + G + + +H Y K G ++H SN L+D YA+CG + A LF+++
Sbjct: 96 LSACAKIGALTLGKRVHVYMIKVGLTR-NLHSSNVLLDLYARCGRVEEAKTLFDEMV--D 152
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFLSVLNACSHGGLVEEGLK 209
KN VSWTS+I G A++G GKEA+E F+ M+ L P +TF+ +L ACSH G+V+EG +
Sbjct: 153 KNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFE 212
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
+F +M EE ++ P I+H+GC++D+L RAG++++A + +P + NVV+WRTLLGAC+
Sbjct: 213 YFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQ-PNVVIWRTLLGACTV 271
Query: 270 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
HG+ ++ E +IL++E + GDYVL+ N+ A R+ D +++R+ + K PG S
Sbjct: 272 HGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHS 331
Query: 330 LV 331
LV
Sbjct: 332 LV 333
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 96/174 (55%), Gaps = 6/174 (3%)
Query: 98 GDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 157
DVR + IH + GF + I+V N L+ YA CG + SA K+F+ + K+LV+W
Sbjct: 2 ADVRLGETIHSVVIRSGFGSL-IYVQNSLLHLYANCGDVASAYKVFDKMP--EKDLVAWN 58
Query: 158 SIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE 217
S+I+GFA +G +EA+ + M +KP+ T +S+L+AC+ G + G + M+ +
Sbjct: 59 SVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMI-K 117
Query: 218 CEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ ++ L+D+ R GR+E+A+ + + + N V W +L+ + +G
Sbjct: 118 VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDK--NSVSWTSLIVGLAVNG 169
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 25/185 (13%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
RNL + NV++ + G +E A++LF+EM +N VSWT +I G A+ LF+ M
Sbjct: 122 RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYM 181
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF-----------HIHVS 123
+ E P EIT + + A G V K GF F I
Sbjct: 182 ESTEGLLPCEITFVGILYACSHCGMV-----------KEGFEYFRRMREEYKIEPRIEHF 230
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
C++D A+ G + A + + + ++ N+V W +++ +HG A F R+Q +
Sbjct: 231 GCMVDLLARAGQVKKAYEYIKSMPMQ-PNVVIWRTLLGACTVHGDSDLA--EFARIQILQ 287
Query: 184 LKPNR 188
L+PN
Sbjct: 288 LEPNH 292
>gi|356507694|ref|XP_003522599.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 535
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/314 (37%), Positives = 190/314 (60%), Gaps = 7/314 (2%)
Query: 3 KDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
K L + +P +N+V+WN +I ++ G++E AR +F+ MP R+ VSW +I G +
Sbjct: 201 KSADYLLESMPHKNVVSWNTVIGRYIRLGDIEGARRVFQIMPQRDAVSWNSLIAGCVSVK 260
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV 122
GA+ LF M E P+E+T+++V A + G + IH + G + ++
Sbjct: 261 DYEGAMGLFSEMQNAE-VRPTEVTLISVLGACAETGALEMGSKIHESLKACG-HKIEGYL 318
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
N L++ Y+KCG + SA ++F + + K L W ++I G A+HG +EA++ F M+
Sbjct: 319 GNALLNMYSKCGKLNSAWEVFNGMRI--KTLSCWNAMIVGLAVHGYCEEALQLFSEMESG 376
Query: 183 V--LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ ++PNRVTFL VL ACSH GLV++ FD M ++ ++LPDIKHYGC++D+L R G L
Sbjct: 377 LDTVRPNRVTFLGVLIACSHKGLVDKARWNFDHMAKQYKILPDIKHYGCIVDLLSRFGLL 436
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+A ++ P + + ++WRTLLGAC GNVE+ + +++ ++ R GDYVL+ NI
Sbjct: 437 EEAHQMIKTAPLQ-NSAILWRTLLGACRTQGNVELAKVSFQQLAKLGRLTDGDYVLLSNI 495
Query: 301 LAGVWRYGDAERLR 314
A R+ + ER+R
Sbjct: 496 YAEAERWDEVERVR 509
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 115/271 (42%), Gaps = 53/271 (19%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ + G + A+ LF+E+ R++VSW +I Y R+N S A L M
Sbjct: 157 NSLLCMYSQCGLVHVAQHLFDEISNRSLVSWNIMISAYDRVNDSKSADYLLESM------ 210
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P + + W N +I Y + G I A
Sbjct: 211 -PHKNVV------SW----------------------------NTVIGRYIRLGDIEGAR 235
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
++F+ + +++ VSW S+I+G + A+ F MQ ++P VT +SVL AC+
Sbjct: 236 RVFQIM--PQRDAVSWNSLIAGCVSVKDYEGAMGLFSEMQNAEVRPTEVTLISVLGACAE 293
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHY--GCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
G +E G K + + + C I+ Y L++M + G+L A +V +G+ I +
Sbjct: 294 TGALEMGSKIHESL-KACG--HKIEGYLGNALLNMYSKCGKLNSAWEVFNGM--RIKTLS 348
Query: 259 VWRTLLGACSFHGNVEMGERVTRKILEMERG 289
W ++ + HG E + EME G
Sbjct: 349 CWNAMIVGLAVHGYC---EEALQLFSEMESG 376
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 125/322 (38%), Gaps = 45/322 (13%)
Query: 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM------- 74
+ + L G L +A SLF + N +I + + AL ++ M
Sbjct: 44 IFFSALSPMGNLSHAHSLFLQTSMHNSFICNTMIRAFANSSYPLQALYIYNHMHTTNVVS 103
Query: 75 ---------VACEYTE--PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
AC E F I + G+V L G + +
Sbjct: 104 DHFTYNFVLKACSRAHKFAQEFVKCDEFIIISKGGEVHCTVLKLGLDQDPS-------IQ 156
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N L+ Y++CG + A LF++IS ++LVSW +IS + K A E M
Sbjct: 157 NSLLCMYSQCGLVHVAQHLFDEIS--NRSLVSWNIMISAYDRVNDSKSADYLLESMP--- 211
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLI--DMLGRAGRLE 241
N V++ +V+ G +E + F M + V + GC+ D G G
Sbjct: 212 -HKNVVSWNTVIGRYIRLGDIEGARRVFQIMPQRDAVSWNSLIAGCVSVKDYEGAMGLFS 270
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER---GYGGDYVL-M 297
+ + A P+E+T + V LGAC+ G +EMG ++ + GY G+ +L M
Sbjct: 271 EMQN-AEVRPTEVTLISV----LGACAETGALEMGSKIHESLKACGHKIEGYLGNALLNM 325
Query: 298 YN---ILAGVWRYGDAERLRRV 316
Y+ L W + R++ +
Sbjct: 326 YSKCGKLNSAWEVFNGMRIKTL 347
>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 600
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/331 (34%), Positives = 188/331 (56%), Gaps = 6/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ KLF+E+PERN TWN MI G + G +E A LF +MP ++++SWT +I Y++
Sbjct: 220 MDSARKLFEEMPERNTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQN 279
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ ALA++ M P E+T+ V A G + + IH Y +G N ++
Sbjct: 280 KQYQDALAIYSEM-RLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLN-LDVY 337
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ + L+D YAKCG + +L +F + KNL W ++I G A+HG ++A+ F M++
Sbjct: 338 IGSALVDMYAKCGSLDLSLLIF--FKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMER 395
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ PN VTF+S+L+AC+H GLV+EG F M + ++ PDI+HYGC++DML ++G L
Sbjct: 396 EKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLN 455
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++ + E N ++W LL C HGN E+ E +++ +E G Y L+ ++
Sbjct: 456 EALELIKSMEFE-PNSIIWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMY 514
Query: 302 AGVWRYGDAERLRRVVDERNA-LKFPGRSLV 331
A + + +R ++ E+ K+PG S +
Sbjct: 515 AEEKDWMEVAHIRSMMKEKGVEKKYPGSSWI 545
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 119/276 (43%), Gaps = 24/276 (8%)
Query: 24 ITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPS 83
I+ + Y F +M NV + +I G+ AL + M+ P+
Sbjct: 78 ISASFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPT 137
Query: 84 EITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLF 143
T ++ A V Q++H + K+GF + H+ V L+D Y+K + A K+F
Sbjct: 138 SYTFSSLVKACTFMCAVELGQMVHCHIWKKGFES-HLFVQTALVDFYSKLEILSEARKVF 196
Query: 144 EDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGL 203
+++ ++ +WT+++S A G A + FE M + N T+ ++++ + G
Sbjct: 197 DEMC--ERDAFAWTAMLSALARVGDMDSARKLFEEMP----ERNTATWNTMIDGYTRLGN 250
Query: 204 VEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG------IPSEITNV 257
VE F++M + DI + +I + + + A + S IP E+T
Sbjct: 251 VESAELLFNQMPTK-----DIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVT-- 303
Query: 258 VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD 293
T+ AC+ G +E+G+ + + M +G D
Sbjct: 304 --MSTVASACAHIGALELGKEIHHYV--MSQGLNLD 335
>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Glycine max]
Length = 617
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 194/331 (58%), Gaps = 5/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ +FDE+PER++++W +I + G++ AR LF+ +P +++V+WT ++ GY +
Sbjct: 161 LRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQN 220
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN-AFHI 120
AL +FRR+ E E E+T++ V A Q G + I E GF ++
Sbjct: 221 AMPMDALEVFRRLRD-EGVEIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNV 279
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V + LID Y+KCG + A +F+ + +N+ S++S+I GFA+HG + A++ F M
Sbjct: 280 LVGSALIDMYSKCGNVEEAYDVFK--GMRERNVFSYSSMIVGFAIHGRARAAIKLFYDML 337
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ +KPN VTF+ VL ACSH GLV++G + F M + V P + Y C+ D+L RAG L
Sbjct: 338 ETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYL 397
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+A ++ +P E ++ VW LLGA HGN ++ E ++++ E+E G+Y+L+ N
Sbjct: 398 EKALQLVETMPME-SDGAVWGALLGASHVHGNPDVAEIASKRLFELEPDNIGNYLLLSNT 456
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ D ++R+++ E+N K PG S V
Sbjct: 457 YASAGRWDDVSKVRKLLREKNLKKNPGWSWV 487
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 128/297 (43%), Gaps = 41/297 (13%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
++T L Y R LF ++ N +WT +I Y + AL+ + M P
Sbjct: 49 LVTALPHVPLHSYPRLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRK-RRVSP 107
Query: 83 SEITILAVFPAIWQNGDVRNCQL---IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSA 139
T A+F A VR+ L +H G + ++V+N +ID Y KCG + A
Sbjct: 108 ISFTFSALFSAC---AAVRHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCA 164
Query: 140 LKLFE---------------------DISVER--------KNLVSWTSIISGFAMHGMGK 170
+F+ D+ R K++V+WT++++G+A + M
Sbjct: 165 RMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPM 224
Query: 171 EAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEEC--EVLPDIKHYG 228
+A+E F R++ ++ + VT + V++AC+ G + + + E V ++
Sbjct: 225 DALEVFRRLRDEGVEIDEVTLVGVISACAQLG-ASKYANWIRDIAESSGFGVGDNVLVGS 283
Query: 229 CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
LIDM + G +E+A V G+ NV + +++ + HG ++ +LE
Sbjct: 284 ALIDMYSKCGNVEEAYDVFKGMRER--NVFSYSSMIVGFAIHGRARAAIKLFYDMLE 338
>gi|115456858|ref|NP_001052029.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|38345581|emb|CAE01779.2| OSJNBa0027H06.17 [Oryza sativa Japonica Group]
gi|113563600|dbj|BAF13943.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|125589117|gb|EAZ29467.1| hypothetical protein OsJ_13541 [Oryza sativa Japonica Group]
gi|215736988|dbj|BAG95917.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 531
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/327 (36%), Positives = 186/327 (56%), Gaps = 5/327 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FD++P R+ +TWN M+ + G+++ A LF MP R+VVSW ++ GY R
Sbjct: 172 RVFDDMPSRSTITWNAMLHQYARHGKVDTAYELFLAMPRRDVVSWNTVMAGYCVAGRCRE 231
Query: 67 ALALFRRMVACEY--TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
AL LFR+MV+ P+ T+ + A G + +H Y E+ N ++
Sbjct: 232 ALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMND-DGYLDR 290
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
CLID Y KCG I +AL++FE + +++L SWT++I G AMHG +A+ F+ MQ +
Sbjct: 291 CLIDMYCKCGSIDNALQVFEK-APRKRDLFSWTTVICGLAMHGRATDALRMFDMMQDNGI 349
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
P+ VT + VLNAC+HGGLV+EGL +F M + + P I+HYGC+ID+LGR GRL++A
Sbjct: 350 CPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAY 409
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+ +P + N V+W L AC HGN+E+G+ ++ ++ V++ ++ A
Sbjct: 410 SMIRTMPMD-PNTVIWGAFLSACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSMYAKA 468
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
+ R RR ++ K PG S +
Sbjct: 469 QDWIGLARERREMNSMQVKKTPGCSSI 495
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 130/288 (45%), Gaps = 42/288 (14%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
+++ G ++AR LF+EMP + +V T + + ++ A+A+F MVA +
Sbjct: 50 TALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVA-DGV 108
Query: 81 EPSEITILAVFPAIWQNGD---VRN---------------------CQLIHGYGE----- 111
P + + A G RN +LI YGE
Sbjct: 109 FPDNVALAVALGACHGAGSWTARRNPGKKIHALIVTSGIEPDVFVSTELIRVYGECGKLA 168
Query: 112 --KRGFNAFHIHVS---NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 166
+R F+ + N ++ YA+ G + +A +LF +++ R+++VSW ++++G+ +
Sbjct: 169 VSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYELF--LAMPRRDVVSWNTVMAGYCVA 226
Query: 167 GMGKEAVENFERM---QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD 223
G +EA+ F +M + PN T ++L AC+ G +E G+ + +E + D
Sbjct: 227 GRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGI-WVHAYIERNRMNDD 285
Query: 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
CLIDM + G ++ A +V P + ++ W T++ + HG
Sbjct: 286 GYLDRCLIDMYCKCGSIDNALQVFEKAPRK-RDLFSWTTVICGLAMHG 332
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 7/172 (4%)
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 165
IH K G H+ L+ YA G A +LF+++ + LV T++
Sbjct: 32 IHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEM--PEQGLVPRTAMARAHVA 89
Query: 166 HGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG---LVEEGLKFFDKMVEECEVLP 222
G +A+ F M + P+ V L AC G K ++ + P
Sbjct: 90 SGQAAQAIAVFGDMVADGVFPDNVALAVALGACHGAGSWTARRNPGKKIHALIVTSGIEP 149
Query: 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
D+ LI + G G+L + +V +PS T + W +L + HG V+
Sbjct: 150 DVFVSTELIRVYGECGKLAVSRRVFDDMPSRST--ITWNAMLHQYARHGKVD 199
>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Cucumis sativus]
Length = 602
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/297 (38%), Positives = 184/297 (61%), Gaps = 5/297 (1%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEY-TEPSEITILA 89
G+ E A LF+E+P ++VV+W +I TR R+ AL LF M + Y +P ++T L
Sbjct: 176 GKPEEACKLFDEVPQKDVVAWNVLISCLTRNKRTRDALGLFEIMQSPTYLCQPDKVTCLL 235
Query: 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE 149
+ A + + IHGY ++ G+N ++ N LI Y++CG + A ++F+ ++
Sbjct: 236 LLQACADLNALEFGERIHGYIQQHGYNT-ESNLCNSLISMYSRCGRMDKAYEVFDKMT-- 292
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
KN+VSW+++ISG +M+G G+EA+E F MQK ++P TF +VL+ACSH GLV+EG+
Sbjct: 293 EKNVVSWSAMISGLSMNGHGREAIEAFWEMQKNGVEPGDHTFTAVLSACSHCGLVDEGMA 352
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
FFD+M +E + P++ HYGC++D+LGRAG L+QA ++ + + +WRTLLGAC
Sbjct: 353 FFDRMRQEFMIAPNVHHYGCIVDLLGRAGMLDQAYELIMSMEVR-PDATMWRTLLGACRI 411
Query: 270 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFP 326
HG+ +GER+ ++E++ GDYVL+ NI + + LR+++ E+ P
Sbjct: 412 HGHGNLGERIVEHLIELKSQEAGDYVLLLNIYSSAGNWDKVTELRKLMKEKGIYTTP 468
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 123/276 (44%), Gaps = 30/276 (10%)
Query: 25 TGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM---------V 75
T + +L Y+R LF+ + V + ++ Y+ L ++R M +
Sbjct: 69 TASAPFRDLGYSRRLFDLLTNPFVSHYNAMLRAYSLSRSPLEGLYMYRDMERQGVRADPL 128
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
+ + S I +L++ I IH G A + +++ ++D Y+ CG
Sbjct: 129 SSSFAVKSCIKLLSLLFGIQ----------IHARIFINGHQADSLLLTS-MMDLYSHCGK 177
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK--VVLKPNRVTFLS 193
A KLF++ V +K++V+W +IS + ++A+ FE MQ + +P++VT L
Sbjct: 178 PEEACKLFDE--VPQKDVVAWNVLISCLTRNKRTRDALGLFEIMQSPTYLCQPDKVTCLL 235
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L AC+ +E G + +++ + LI M R GR+++A +V + +
Sbjct: 236 LLQACADLNALEFGERIHG-YIQQHGYNTESNLCNSLISMYSRCGRMDKAYEVFDKMTEK 294
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 289
NVV W ++ S +G+ G EM++
Sbjct: 295 --NVVSWSAMISGLSMNGH---GREAIEAFWEMQKN 325
>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
Length = 871
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 122/322 (37%), Positives = 194/322 (60%), Gaps = 6/322 (1%)
Query: 13 PERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYTRMNRSNGALAL 70
P +L+ N +I K + AR++F+ +P R+VV+WT +I G + +N AL L
Sbjct: 424 PGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALEL 483
Query: 71 FRRMVACE-YTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDT 129
F +M+ + + P+ TI A + G +R + IH Y + F + + V+NCLID
Sbjct: 484 FSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDM 543
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
Y+K G + +A +F+++ ++N VSWTS+++G+ MHG G+EA++ F MQKV L P+ V
Sbjct: 544 YSKSGDVDAARVVFDNM--HQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGV 601
Query: 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
TF+ VL ACSH G+V++G+ +F+ M ++ V+P +HY C++D+L RAGRL++A ++ G
Sbjct: 602 TFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRG 661
Query: 250 IPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGD 309
+P + T VW LL AC + NVE+GE ++LE+E G G Y L+ NI A + D
Sbjct: 662 MPMKPTP-AVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKD 720
Query: 310 AERLRRVVDERNALKFPGRSLV 331
R+R ++ K PG S V
Sbjct: 721 VARIRYLMKNTGIKKRPGCSWV 742
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 148/299 (49%), Gaps = 18/299 (6%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR----NVVSWTGIIDG 57
+++ +K+F+ + +++V+WN M+TG + G + A LFE++ NVV+W+ +I G
Sbjct: 301 MEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAG 360
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN- 116
Y + AL +FR+M+ C +EP+ +T++++ G + + + H + K N
Sbjct: 361 YAQRGLGFEALDVFRQMLLCG-SEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNL 419
Query: 117 -----AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKE 171
+ V N LID Y+KC +A +F+ I + +++V+WT +I G A HG E
Sbjct: 420 DENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANE 479
Query: 172 AVENFERMQKV--VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC 229
A+E F +M + + PN T L AC+ G + G + ++ + C
Sbjct: 480 ALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANC 539
Query: 230 LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
LIDM ++G ++ A V + N V W +L+ HG GE + EM++
Sbjct: 540 LIDMYSKSGDVDAARVVFDNMHQR--NGVSWTSLMTGYGMHGR---GEEALQIFYEMQK 593
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 147/343 (42%), Gaps = 57/343 (16%)
Query: 20 WNVMI-TGLV----KWGELEYARSLFEEMPCRNV---VSWTGIIDGYTRMNRSNGALALF 71
WNV + GLV + G E AR +F+EM R V VSW I+ Y + S A+ +F
Sbjct: 178 WNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMF 237
Query: 72 RRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYA 131
RM P ++++ V PA G + +HGY + G + V N ++D YA
Sbjct: 238 ERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFE-DVFVGNAVVDMYA 296
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTS--------------------------------- 158
KCG + A K+FE + V K++VSW +
Sbjct: 297 KCGMMEEANKVFERMKV--KDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTW 354
Query: 159 --IISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV- 215
+I+G+A G+G EA++ F +M +PN VT +S+L+ C+ G + G + +
Sbjct: 355 SAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIK 414
Query: 216 -----EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
+E + D+ LIDM + + A + IP + +VV W L+G + H
Sbjct: 415 WILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQH 474
Query: 271 GNVEMGERVTRKILE-----MERGYGGDYVLMYNILAGVWRYG 308
G + ++L+ M + LM G R+G
Sbjct: 475 GEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFG 517
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 111/243 (45%), Gaps = 9/243 (3%)
Query: 46 RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQL 105
V W +I + L L+RRM + P T V A + R
Sbjct: 108 HTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGW-RPDHYTFPFVLKACGEIPSFRCGAS 166
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK--NLVSWTSIISGF 163
+H GF +++ V N L+ Y +CG +A ++F+++ ER +LVSW SI++ +
Sbjct: 167 VHAVVFASGFE-WNVFVGNGLVSMYGRCGAWENARQVFDEMR-ERGVGDLVSWNSIVAAY 224
Query: 164 AMHGMGKEAVENFERM-QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP 222
G A++ FERM + + ++P+ V+ ++VL AC+ G G + + +
Sbjct: 225 MQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS-GLFE 283
Query: 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRK 282
D+ ++DM + G +E+A KV + ++ +VV W ++ S G + + K
Sbjct: 284 DVFVGNAVVDMYAKCGMMEEANKVFERM--KVKDVVSWNAMVTGYSQIGRFDDALGLFEK 341
Query: 283 ILE 285
I E
Sbjct: 342 IRE 344
>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic; Flags: Precursor
gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 544
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 120/330 (36%), Positives = 191/330 (57%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + K+FDE+P+R+ V VMI + G ++ A LF+++ ++ V WT +IDG R
Sbjct: 174 LVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRN 233
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
N AL LFR M E +E T + V A G + + +H + E + +
Sbjct: 234 KEMNKALELFREM-QMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNF- 291
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LI+ Y++CG I A ++F + K+++S+ ++ISG AMHG EA+ F M
Sbjct: 292 VGNALINMYSRCGDINEARRVFR--VMRDKDVISYNTMISGLAMHGASVEAINEFRDMVN 349
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+PN+VT +++LNACSHGGL++ GL+ F+ M V P I+HYGC++D+LGR GRLE
Sbjct: 350 RGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLE 409
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + IP E ++++ TLL AC HGN+E+GE++ +++ E E G YVL+ N+
Sbjct: 410 EAYRFIENIPIEPDHIMLG-TLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLY 468
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ ++ +R + + K PG S +
Sbjct: 469 ASSGKWKESTEIRESMRDSGIEKEPGCSTI 498
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 126/271 (46%), Gaps = 44/271 (16%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
++YA +F + NV +T +IDG+ RS ++L+ RM+ P I +V
Sbjct: 77 VDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIH-NSVLPDNYVITSVLK 135
Query: 93 AIWQNGDVRNCQLIH------GYGEKR--GFNAFHIH----------------------V 122
A D++ C+ IH G+G R G I+
Sbjct: 136 AC----DLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVA 191
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
+ +I+ Y++CG I AL+LF+D+ + K+ V WT++I G + +A+E F MQ
Sbjct: 192 ATVMINCYSECGFIKEALELFQDVKI--KDTVCWTAMIDGLVRNKEMNKALELFREMQME 249
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY--GCLIDMLGRAGRL 240
+ N T + VL+ACS G +E G ++ VE + ++ ++ LI+M R G +
Sbjct: 250 NVSANEFTAVCVLSACSDLGALELG-RWVHSFVENQRM--ELSNFVGNALINMYSRCGDI 306
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+A +V + + +V+ + T++ + HG
Sbjct: 307 NEARRVFRVMRDK--DVISYNTMISGLAMHG 335
>gi|297828245|ref|XP_002882005.1| hypothetical protein ARALYDRAFT_903974 [Arabidopsis lyrata subsp.
lyrata]
gi|297327844|gb|EFH58264.1| hypothetical protein ARALYDRAFT_903974 [Arabidopsis lyrata subsp.
lyrata]
Length = 408
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 195/330 (59%), Gaps = 8/330 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D LFD +P R++VT MI G K G + A++LF++MP R+VV++ ++ GY +
Sbjct: 63 IEDAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGYVQN 122
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY-GEKRGFNAFHI 120
AL +F M + P E T++ + AI Q G + +H Y EK+ + +
Sbjct: 123 KCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKATDMHLYIVEKQFYLGGKL 182
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V+ LID Y+KCG I A+ +FE I E K++ W ++I G A+HG+G+ A +++
Sbjct: 183 GVA--LIDMYSKCGSIQHAMLVFEGI--ENKSIDHWNAMIGGLAVHGLGESAFNMLLQIE 238
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
++ + P+ +TF+ VLNACSH GLV+EGL F+ M + ++ P ++HYGC++D+L R+G +
Sbjct: 239 RLSIIPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSI 298
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG-GDYVLMYN 299
E A+ + +P E N V+WRT L ACS H E GE V + ++ ++ GY YVL+ N
Sbjct: 299 ELAKNLIEEMPIE-PNDVIWRTFLTACSHHKEFETGELVAKHLI-LQAGYNPSSYVLLSN 356
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRS 329
+ A + D R+R ++ ER K PG S
Sbjct: 357 MYASFGMWKDVRRVRTMMKERKIEKIPGCS 386
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 111/254 (43%), Gaps = 50/254 (19%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW 95
A LF EMP ++++SW +IDGY + R A LF M
Sbjct: 35 ASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVM--------------------- 73
Query: 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 155
DV C +ID YAK G + A LF+ + + +++V+
Sbjct: 74 PRRDVVTCA--------------------TMIDGYAKLGFVHQAKTLFDQMPL--RDVVA 111
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFLSVLNACSHGGLVEEGLKFFDKM 214
+ S+++G+ + EA+E F M+K L P+ T + +L+A + G + + +
Sbjct: 112 YNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKATDMHLYI 171
Query: 215 VEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
VE+ L K LIDM + G ++ A V GI E ++ W ++G + HG
Sbjct: 172 VEKQFYLGG-KLGVALIDMYSKCGSIQHAMLVFEGI--ENKSIDHWNAMIGGLAVHG--- 225
Query: 275 MGERVTRKILEMER 288
+GE +L++ER
Sbjct: 226 LGESAFNMLLQIER 239
>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
Length = 1329
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 115/331 (34%), Positives = 192/331 (58%), Gaps = 6/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + L +++PE+N TWN +I G + G LE A SLF +MP ++++SWT +I+GY+R
Sbjct: 958 MDSANSLANQMPEKNEATWNCLIDGYTRLGNLELAESLFNQMPVKDIISWTTMINGYSRN 1017
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R A+A+F +M+ E P E+T+ V A G + + +H Y + GF ++
Sbjct: 1018 KRYREAIAVFYKMME-EGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTVQNGF-VLDVY 1075
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ + L+D Y+KCG + AL +F ++ +KNL W SII G A HG +EA++ F +M+
Sbjct: 1076 IGSALVDMYSKCGSLERALLVF--FNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEM 1133
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPN VTF+SV AC+H GLVEEG + + M+++ ++ +++HYGC++ + +AG +
Sbjct: 1134 ESVKPNTVTFVSVFTACTHAGLVEEGRRIYRSMIDDYSIVSNVEHYGCMVHLFSKAGLIY 1193
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++ + E N V+W LL C H N+E+ E K++ +E G Y L+ ++
Sbjct: 1194 EALELIGSMEFE-PNAVIWGALLDGCRIHKNLEIAEIAFNKLMILEPMNSGYYFLLVSMY 1252
Query: 302 AGVWRYGDAERLRRVVDERNALKF-PGRSLV 331
A R+ D +R + E K PG S +
Sbjct: 1253 AEQNRWRDVAEIRGRMRELGIEKICPGTSSI 1283
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 119/301 (39%), Gaps = 64/301 (21%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
+N N IT + L+ A S +M NV + +I G+ + +L + RM
Sbjct: 810 QNCYLMNQFITACSSFNRLDLAVSFMTQMQKPNVFVYNALIKGFVTCSHPIRSLEFYVRM 869
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGE-------KRGFNAFHIHVSNCLI 127
+ + PS T ++ V+ G+GE K GF FH+ + LI
Sbjct: 870 LR-DSVSPSSYTYSSL---------VQASAFASGFGESLQAHIWKFGF-GFHVQIQTTLI 918
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
Y+ G I A K+F+++ ER + V+WT+++S +
Sbjct: 919 GFYSASGRIREARKVFDEMP-ERDD-VTWTTMVSAYRQ---------------------- 954
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
VL+ S L ++M E+ E + CLID R G LE AE +
Sbjct: 955 ------VLDMDSANSLA-------NQMPEKNEAT-----WNCLIDGYTRLGNLELAESLF 996
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+ +P + +++ W T++ S + V K+ ME G D V M +++
Sbjct: 997 NQMP--VKDIISWTTMINGYSRNKRYREAIAVFYKM--MEEGIIPDEVTMSTVISACAHL 1052
Query: 308 G 308
G
Sbjct: 1053 G 1053
>gi|115486992|ref|NP_001065983.1| Os12g0114400 [Oryza sativa Japonica Group]
gi|113648490|dbj|BAF29002.1| Os12g0114400, partial [Oryza sativa Japonica Group]
Length = 504
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 192/325 (59%), Gaps = 8/325 (2%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
++ +P RNL WN I V+ G ++ A +F EMP R+ VSW +I GYT++ +
Sbjct: 183 ADRVSQAMPVRNLSWWNAEIARNVRIGYMDEAARIFSEMPERDAVSWNSLISGYTKLGKY 242
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
AL +F+ M +P+E+T++ V A + G + IH + +G A + V N
Sbjct: 243 TQALGIFQEMQE-NGIQPTELTLVLVLGACAKIGKLDLGTNIHRNLQNKGIVADGL-VGN 300
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LID YAKCG + A K+F+ +S+ +++ W ++I GF++HG +EA+E F+ M+ +
Sbjct: 301 ALIDMYAKCGMLDLAKKVFDRMSM--RDITCWNAMIVGFSVHGCSREALELFDSMK---I 355
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
+PN VTFL VL ACSHGGLV EG K+F+ M+E+ ++PD+KHYGC+IDML R G++E+A
Sbjct: 356 EPNPVTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPDVKHYGCMIDMLCRYGKIEEAY 415
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+ PS ++ V+W+ LL AC HG++++ ++ E+ G V + N+ A
Sbjct: 416 LMIKENPSTASS-VLWKMLLAACRVHGHIDLAYMFFHELRELILTDNGGLVTISNVYAEA 474
Query: 305 WRYGDAERLRRVVDERNALKFPGRS 329
R+ D E LR V +ALK S
Sbjct: 475 KRWDDVEHLRMKVRCNSALKHAAHS 499
>gi|90265157|emb|CAH67783.1| H0201G08.10 [Oryza sativa Indica Group]
Length = 530
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 118/327 (36%), Positives = 186/327 (56%), Gaps = 5/327 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FD++P R+ +TWN M+ + G+++ A +F MP R+VVSW ++ GY R
Sbjct: 171 RVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCRE 230
Query: 67 ALALFRRMVACEY--TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
AL LFR+MV+ P+ T+ + A G + +H Y E+ N ++
Sbjct: 231 ALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMND-DGYLDR 289
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
CLID Y KCG I +AL++FE + +K+L SWT++I G AMHG +A+ F+ MQ +
Sbjct: 290 CLIDMYCKCGSIDNALQVFEK-APRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGI 348
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
P+ VT + VLNAC+HGGLV+EGL +F M + + P I+HYGC+ID+LGR GRL++A
Sbjct: 349 CPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAY 408
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+ +P + N V+W L AC HGN+E+G+ ++ ++ V++ ++ A
Sbjct: 409 SMIRTMPMD-PNTVIWGAFLSACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSMYAKA 467
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
+ R RR ++ K PG S +
Sbjct: 468 QDWIGLARERREMNSMQVKKTPGCSSI 494
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 131/288 (45%), Gaps = 42/288 (14%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
+++ G ++AR LF+EMP + +V T + + ++ A+A+F MVA +
Sbjct: 49 TALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVA-DGV 107
Query: 81 EPSEITILAVFPAIWQNG-----------------------DV-RNCQLIHGYGE----- 111
P + + A G DV + +LI YGE
Sbjct: 108 FPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELP 167
Query: 112 --KRGFNAFHIHVS---NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 166
+R F+ + N ++ YA+ G + +A ++F +++ R+++VSW ++++G+ +
Sbjct: 168 VSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMF--LAMPRRDVVSWNTVLAGYCVA 225
Query: 167 GMGKEAVENFERM---QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD 223
G +EA+ F +M + PN T ++L AC+ G +E G+ + +E + D
Sbjct: 226 GRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGI-WVHAYIERNRMNDD 284
Query: 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
CLIDM + G ++ A +V P + ++ W T++ + HG
Sbjct: 285 GYLDRCLIDMYCKCGSIDNALQVFEKAPRK-KDLFSWTTVICGLAMHG 331
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 88/220 (40%), Gaps = 15/220 (6%)
Query: 87 ILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI 146
I ++ PA+ +G + IH K G H+ L+ YA G A +LF+++
Sbjct: 14 IKSLSPAV--HGAHLSASSIHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEM 71
Query: 147 SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG---L 203
+ LV T++ G +A+ F M + P+ V L AC G
Sbjct: 72 --PEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFPDNVAVAVALGACHGAGSWTA 129
Query: 204 VEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTL 263
K +V ++PD+ LI + G +G L + +V +PS T + W +
Sbjct: 130 RRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPVSRRVFDDMPSRST--ITWNAM 187
Query: 264 LGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
L + HG V+ + L M R D V +LAG
Sbjct: 188 LHQYARHGKVDTAYEM---FLAMPR---RDVVSWNTVLAG 221
>gi|77553484|gb|ABA96280.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125578286|gb|EAZ19432.1| hypothetical protein OsJ_34992 [Oryza sativa Japonica Group]
Length = 518
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 192/325 (59%), Gaps = 8/325 (2%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
++ +P RNL WN I V+ G ++ A +F EMP R+ VSW +I GYT++ +
Sbjct: 197 ADRVSQAMPVRNLSWWNAEIARNVRIGYMDEAARIFSEMPERDAVSWNSLISGYTKLGKY 256
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
AL +F+ M +P+E+T++ V A + G + IH + +G A + V N
Sbjct: 257 TQALGIFQEMQE-NGIQPTELTLVLVLGACAKIGKLDLGTNIHRNLQNKGIVADGL-VGN 314
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LID YAKCG + A K+F+ +S+ +++ W ++I GF++HG +EA+E F+ M+ +
Sbjct: 315 ALIDMYAKCGMLDLAKKVFDRMSM--RDITCWNAMIVGFSVHGCSREALELFDSMK---I 369
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
+PN VTFL VL ACSHGGLV EG K+F+ M+E+ ++PD+KHYGC+IDML R G++E+A
Sbjct: 370 EPNPVTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPDVKHYGCMIDMLCRYGKIEEAY 429
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+ PS ++ V+W+ LL AC HG++++ ++ E+ G V + N+ A
Sbjct: 430 LMIKENPSTASS-VLWKMLLAACRVHGHIDLAYMFFHELRELILTDNGGLVTISNVYAEA 488
Query: 305 WRYGDAERLRRVVDERNALKFPGRS 329
R+ D E LR V +ALK S
Sbjct: 489 KRWDDVEHLRMKVRCNSALKHAAHS 513
>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 606
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 117/301 (38%), Positives = 184/301 (61%), Gaps = 5/301 (1%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G + AR +F+EMP + V+W+ +I GY R+ RS A+ALFR M E P EIT++++
Sbjct: 182 GGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVC-PDEITMVSM 240
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A G + + I Y E+ + + VSN LID +AKCG I ALKLF ++
Sbjct: 241 LSACTDLGALELGKWIEAYIERHEIHK-PVEVSNALIDMFAKCGDISKALKLFR--AMNE 297
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
K +VSWTS+I G AMHG G+EA FE M + P+ V F+ +L+ACSH GLVE G ++
Sbjct: 298 KTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREY 357
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
F M+++ +++P I+HYGC++DM R G +++A + +P E N V+ RTL+ AC H
Sbjct: 358 FGSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIE-PNPVILRTLVSACRGH 416
Query: 271 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSL 330
G ++GE++T+ +++ E + +YVL+ NI A + ++R V++ + K PG ++
Sbjct: 417 GEFKLGEKITKLLMKHEPLHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTM 476
Query: 331 V 331
+
Sbjct: 477 I 477
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/316 (36%), Positives = 186/316 (58%), Gaps = 4/316 (1%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E N+V NVM+ G + G L+ AR LF+ M R+VVSW +I GY + A+ +F R
Sbjct: 196 EFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHR 255
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M+ P+ +T+++V PAI + G + + +H Y EK + + + L+D YAKC
Sbjct: 256 MMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDV-LGSALVDMYAKC 314
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G I A+++FE + + N+++W ++I G AMHG + RM+K + P+ VT+++
Sbjct: 315 GSIEKAIQVFERLP--QNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIA 372
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L+ACSH GLV+EG FF+ MV + P I+HYGC++D+LGRAG LE+AE++ +P +
Sbjct: 373 ILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMK 432
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
+ V+W+ LLGA H N+++G R +++M G YV + N+ A + +
Sbjct: 433 PDD-VIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAV 491
Query: 314 RRVVDERNALKFPGRS 329
R ++ + + K PG S
Sbjct: 492 RLMMKDMDIRKDPGCS 507
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 139/296 (46%), Gaps = 53/296 (17%)
Query: 24 ITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR-MNRSNGALALFRRMVACEYTEP 82
++ + ++ YA S+F+++P RN +W +I +R AL +F +M++ EP
Sbjct: 56 LSATSDFRDIGYALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEP 115
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF--------------------------- 115
++ T +V A + + +HG K G
Sbjct: 116 NQFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLF 175
Query: 116 -------------------NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 156
F++ + N ++D YA+ G + +A +LF+ ++ ++++VSW
Sbjct: 176 YRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMA--QRSVVSW 233
Query: 157 TSIISGFAMHGMGKEAVENFERMQKV-VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215
+ISG+A +G KEA+E F RM ++ + PNRVT +SVL A S G++E G K+
Sbjct: 234 NVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELG-KWVHLYA 292
Query: 216 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
E+ ++ D L+DM + G +E+A +V +P NV+ W ++G + HG
Sbjct: 293 EKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQ--NNVITWNAVIGGLAMHG 346
>gi|297828247|ref|XP_002882006.1| hypothetical protein ARALYDRAFT_903976 [Arabidopsis lyrata subsp.
lyrata]
gi|297327845|gb|EFH58265.1| hypothetical protein ARALYDRAFT_903976 [Arabidopsis lyrata subsp.
lyrata]
Length = 412
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 195/330 (59%), Gaps = 8/330 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D LFD +P R++VT MI G K G + A++LF++MP R+VV++ ++ GY +
Sbjct: 67 IEDAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGYVQN 126
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY-GEKRGFNAFHI 120
AL +F M + P E T++ + AI Q G + +H Y EK+ + +
Sbjct: 127 KCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKATDMHLYIVEKQFYLGGKL 186
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V+ LID Y+KCG I A+ +FE I E K++ W ++I G A+HG+G+ A +++
Sbjct: 187 GVA--LIDMYSKCGSIQHAMLVFEGI--ENKSIDHWNAMIGGLAVHGLGESAFNMLLQIE 242
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
++ + P+ +TF+ VLNACSH GLV+EGL F+ M + ++ P ++HYGC++D+L R+G +
Sbjct: 243 RLSIIPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSI 302
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG-GDYVLMYN 299
E A+ + +P E N V+WRT L ACS H E GE V + ++ ++ GY YVL+ N
Sbjct: 303 ELAKNLIEEMPIE-PNDVIWRTFLTACSHHKEFETGELVAKHLI-LQAGYNPSSYVLLSN 360
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRS 329
+ A + D R+R ++ ER K PG S
Sbjct: 361 MYASFGMWKDVRRVRTMMKERKIEKIPGCS 390
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 111/254 (43%), Gaps = 50/254 (19%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW 95
A LF EMP ++++SW +IDGY + R A LF M
Sbjct: 39 ASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVM--------------------- 77
Query: 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 155
DV C +ID YAK G + A LF+ + + +++V+
Sbjct: 78 PRRDVVTCA--------------------TMIDGYAKLGFVHQAKTLFDQMPL--RDVVA 115
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFLSVLNACSHGGLVEEGLKFFDKM 214
+ S+++G+ + EA+E F M+K L P+ T + +L+A + G + + +
Sbjct: 116 YNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKATDMHLYI 175
Query: 215 VEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
VE+ L K LIDM + G ++ A V GI E ++ W ++G + HG
Sbjct: 176 VEKQFYLGG-KLGVALIDMYSKCGSIQHAMLVFEGI--ENKSIDHWNAMIGGLAVHG--- 229
Query: 275 MGERVTRKILEMER 288
+GE +L++ER
Sbjct: 230 LGESAFNMLLQIER 243
>gi|115441803|ref|NP_001045181.1| Os01g0914600 [Oryza sativa Japonica Group]
gi|20804987|dbj|BAB92663.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113534712|dbj|BAF07095.1| Os01g0914600 [Oryza sativa Japonica Group]
Length = 589
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 188/325 (57%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD++P+R+LV WN MI G + G ++ AR LFEEMP RNV+SW+ +IDGY R N
Sbjct: 234 ELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNE 293
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL F+RM+ C +P + + A Q G + + +H Y EK+ F + V L
Sbjct: 294 ALEFFQRMLRCG-IKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKV-LFDVVVQTAL 351
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y KCG + A +FE S+ +K++V+W +I G HG G +A++ F +M+
Sbjct: 352 IDMYVKCGRLDLAKLIFE--SMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPM 409
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ ++ L+VL +C+H GLV EGL F +M ++ + P ++HYG LID+LGRAGR++QA
Sbjct: 410 DDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNT 469
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E T +W +LL +C H VE+ E ++ + G YVL+ NI A
Sbjct: 470 IETMPMEPTP-ELWGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGM 528
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ D R+R+++ K GRS++
Sbjct: 529 WDDVFRIRKLMSAEGMKKNIGRSVI 553
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 108/248 (43%), Gaps = 26/248 (10%)
Query: 34 EYARSLFE---EMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
++A S+F E R+ W ++ + + +L F RM P T AV
Sbjct: 65 DHADSVFAHLAEEASRHAFPWNTLVRLHAAAS-PRRSLLYFSRMRRAA-VAPDAYTFPAV 122
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A R ++HG + G +A + N LI Y + G S K+F D V
Sbjct: 123 LKACGCAPGCRVGLVVHGEAVRTGLDA-DLFTRNALISFYCRIGDCRSGRKVF-DHGV-- 178
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH-GGLVEEGLK 209
++LVSW S+++G+ G A + F+ M+ + + ++ ++++ G V+ +
Sbjct: 179 RDLVSWNSMVAGYVGCGEVDLAQDLFDEMR----QRDAFSWATMIDGYGEMAGGVDRARE 234
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
FD+M + D+ + +ID R GR+++A + +P NV+ W ++
Sbjct: 235 LFDQMPDR-----DLVCWNSMIDGYARHGRMDEARVLFEEMPER--NVISWSIVID---- 283
Query: 270 HGNVEMGE 277
G V GE
Sbjct: 284 -GYVRFGE 290
>gi|215741011|dbj|BAG97506.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 483
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 188/325 (57%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD++P+R+LV WN MI G + G ++ AR LFEEMP RNV+SW+ +IDGY R N
Sbjct: 128 ELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNE 187
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL F+RM+ C +P + + A Q G + + +H Y EK+ F + V L
Sbjct: 188 ALEFFQRMLRCG-IKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKV-LFDVVVQTAL 245
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y KCG + A +FE S+ +K++V+W +I G HG G +A++ F +M+
Sbjct: 246 IDMYVKCGRLDLAKLIFE--SMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPM 303
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ ++ L+VL +C+H GLV EGL F +M ++ + P ++HYG LID+LGRAGR++QA
Sbjct: 304 DDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNT 363
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E T +W +LL +C H VE+ E ++ + G YVL+ NI A
Sbjct: 364 IETMPMEPTP-ELWGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGM 422
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ D R+R+++ K GRS++
Sbjct: 423 WDDVFRIRKLMSAEGMKKNIGRSVI 447
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 21/197 (10%)
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
P T AV A R ++HG + G +A + N LI Y + G S K
Sbjct: 8 PDAYTFPAVLKACGCAPGCRVGLVVHGEAVRTGLDA-DLFTRNALISFYCRIGDCRSGRK 66
Query: 142 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH- 200
+F D V ++LVSW S+++G+ G A + F+ M+ + + ++ ++++
Sbjct: 67 VF-DHGV--RDLVSWNSMVAGYVGCGEVDLAQDLFDEMR----QRDAFSWATMIDGYGEM 119
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
G V+ + FD+M + D+ + +ID R GR+++A + +P NV+ W
Sbjct: 120 AGGVDRARELFDQMPDR-----DLVCWNSMIDGYARHGRMDEARVLFEEMPER--NVISW 172
Query: 261 RTLLGACSFHGNVEMGE 277
++ G V GE
Sbjct: 173 SIVI-----DGYVRFGE 184
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 116/312 (37%), Positives = 195/312 (62%), Gaps = 6/312 (1%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ G++ A +F++MP +++V+W +I+G+ + ALAL+ M + +
Sbjct: 160 NSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNS-KGI 218
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+P TI+++ A + G + + +H Y K G ++H SN L+D YA+CG + A
Sbjct: 219 KPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTR-NLHSSNVLLDLYARCGRVEEAK 277
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFLSVLNACS 199
LF+++ KN VSWTS+I G A++G GKEA+E F+ M+ L P +TF+ +L ACS
Sbjct: 278 TLFDEMV--DKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACS 335
Query: 200 HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVV 259
H G+V+EG ++F +M EE ++ P I+H+GC++D+L RAG++++A + +P + NVV+
Sbjct: 336 HCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQ-PNVVI 394
Query: 260 WRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319
WRTLLGAC+ HG+ ++ E +IL++E + GDYVL+ N+ A R+ D +++R+ +
Sbjct: 395 WRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLR 454
Query: 320 RNALKFPGRSLV 331
K PG SLV
Sbjct: 455 DGVKKVPGHSLV 466
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 126/250 (50%), Gaps = 9/250 (3%)
Query: 24 ITGLVKWGELEYARSLFE--EMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTE 81
+ L + YA +F E P NV W +I GY + S A +L+R M E
Sbjct: 60 LVSLPSPPPMSYAHKVFSKIEKPI-NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVE 118
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
P T + A+ DVR + IH + GF + I+V N L+ YA CG + SA K
Sbjct: 119 PDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSL-IYVQNSLLHLYANCGDVASAYK 177
Query: 142 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHG 201
+F+ + K+LV+W S+I+GFA +G +EA+ + M +KP+ T +S+L+AC+
Sbjct: 178 VFDKMP--EKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKI 235
Query: 202 GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWR 261
G + G + M+ + + ++ L+D+ R GR+E+A+ + + + N V W
Sbjct: 236 GALTLGKRVHVYMI-KVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDK--NSVSWT 292
Query: 262 TLLGACSFHG 271
+L+ + +G
Sbjct: 293 SLIVGLAVNG 302
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 85/184 (46%), Gaps = 25/184 (13%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
RNL + NV++ + G +E A++LF+EM +N VSWT +I G A+ LF+ M
Sbjct: 255 RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYM 314
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF-----------HIHVS 123
+ E P EIT + + A G V K GF F I
Sbjct: 315 ESTEGLLPCEITFVGILYACSHCGMV-----------KEGFEYFRRMREEYKIEPRIEHF 363
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
C++D A+ G + A + + + ++ N+V W +++ +HG A F R+Q +
Sbjct: 364 GCMVDLLARAGQVKKAYEYIKSMPMQ-PNVVIWRTLLGACTVHGDSDLA--EFARIQILQ 420
Query: 184 LKPN 187
L+PN
Sbjct: 421 LEPN 424
>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 697
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/331 (34%), Positives = 188/331 (56%), Gaps = 6/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ KLF+E+PERN TWN MI G + G +E A LF +MP ++++SWT +I Y++
Sbjct: 317 MDSARKLFEEMPERNTATWNTMIDGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQN 376
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ ALA++ M P E+T+ V A G + + IH Y +G N ++
Sbjct: 377 KQYQDALAIYSEM-RLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLN-LDVY 434
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ + L+D YAKCG + +L +F + KNL W ++I G A+HG ++A+ F M++
Sbjct: 435 IGSALVDMYAKCGSLDLSLLIF--FKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMER 492
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ PN VTF+S+L+AC+H GLV+EG F M + ++ PDI+HYGC++DML ++G L
Sbjct: 493 EKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLN 552
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++ + E N ++W LL C HGN E+ E +++ +E G Y L+ ++
Sbjct: 553 EALELIKSMEFE-PNSIIWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMY 611
Query: 302 AGVWRYGDAERLRRVVDERNA-LKFPGRSLV 331
A + + +R ++ E+ K+PG S +
Sbjct: 612 AEEKDWMEVAHIRSMMKEKGVEKKYPGSSWI 642
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 116/267 (43%), Gaps = 22/267 (8%)
Query: 24 ITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPS 83
I+ + Y F +M NV + +I G+ AL + M+ P+
Sbjct: 175 ISASFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPT 234
Query: 84 EITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLF 143
T ++ A V Q++H + K+GF + H+ V L+D Y+K + A K+F
Sbjct: 235 SYTFSSLVKACTFMCAVELGQMVHCHIWKKGFES-HLFVQTALVDFYSKLEILSEARKVF 293
Query: 144 EDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGL 203
+++ ++ +WT+++S A G A + FE M + N T+ ++++ + G
Sbjct: 294 DEMC--ERDAFAWTAMVSALARVGDMDSARKLFEEMP----ERNTATWNTMIDGYARLGN 347
Query: 204 VEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG------IPSEITNV 257
VE F++M + DI + +I + + + A + S IP E+T
Sbjct: 348 VESAELLFNQMPTK-----DIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVT-- 400
Query: 258 VVWRTLLGACSFHGNVEMGERVTRKIL 284
T+ AC+ G +E+G+ + ++
Sbjct: 401 --MSTVASACAHIGALELGKEIHHYVM 425
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 117/330 (35%), Positives = 189/330 (57%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D +LFD + E++ VTW M+ G + E AR + MP +++V+W +I Y +
Sbjct: 285 IEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQN 344
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ N AL +F + + + ++IT+++ A Q G + + IH Y +K G + +
Sbjct: 345 GKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIK-MNFY 403
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V++ LI Y+KCG + A ++F SVE++++ W+++I G AMHG G EAV+ F +MQ+
Sbjct: 404 VTSALIHMYSKCGDLEKAREVFN--SVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQE 461
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPN VTF +V ACSH GLV+E F KM ++P+ KHY C++D+LGR+G LE
Sbjct: 462 ANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLE 521
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A K +P + VW LLGAC H N+ + E ++LE+E G +VL+ NI
Sbjct: 522 KAVKFIEAMPIP-PSTSVWGALLGACKIHANLSLAEMACTRLLELEPRNDGAHVLLSNIY 580
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ + LR+ + K PG S +
Sbjct: 581 AKSGKWDNVSELRKHMRVTGLKKEPGCSSI 610
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 127/257 (49%), Gaps = 7/257 (2%)
Query: 24 ITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT-EP 82
I L + LEYAR +F+E+P N +W +I Y ++ F MV+ E P
Sbjct: 72 IAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYP 131
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
++ T + A + + Q +HG K + + V+N LI Y CG + SA K+
Sbjct: 132 NKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGS-DVFVANSLIHCYFSCGDLDSACKV 190
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202
F +++ K++VSW S+I+GF G +A+E F++M+ +K + VT + VL+AC+
Sbjct: 191 F--TTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIR 248
Query: 203 LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
+E G + +EE V ++ ++DM + G +E A+++ + E + V W T
Sbjct: 249 DLEFGRRVCS-YIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAM--EEKDNVTWTT 305
Query: 263 LLGACSFHGNVEMGERV 279
+L + + E V
Sbjct: 306 MLDGYAISEDYEAAREV 322
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 140/281 (49%), Gaps = 35/281 (12%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I G+L+ A +F + ++VVSW +I+G+ + + AL LF++M + E
Sbjct: 172 NSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMES-EDV 230
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+ S +T++ V A + D+ + + Y E+ N ++ ++N ++D Y KCG I A
Sbjct: 231 KASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNV-NLTLANAMLDMYTKCGSIEDAK 289
Query: 141 KLFEDI-----------------------------SVERKNLVSWTSIISGFAMHGMGKE 171
+LF+ + ++ +K++V+W ++IS + +G E
Sbjct: 290 RLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNE 349
Query: 172 AVENFERMQ-KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCL 230
A+ F +Q + +K N++T +S L+AC+ G +E G ++ +++ + + L
Sbjct: 350 ALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELG-RWIHSYIKKNGIKMNFYVTSAL 408
Query: 231 IDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
I M + G LE+A +V + + E +V VW ++G + HG
Sbjct: 409 IHMYSKCGDLEKAREVFNSV--EKRDVFVWSAMIGGLAMHG 447
>gi|449451309|ref|XP_004143404.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
gi|449526377|ref|XP_004170190.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 577
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 185/316 (58%), Gaps = 5/316 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+F + ER++VTW M+ + L+ A +F MP +NV +WT +I+ + SN
Sbjct: 201 SIFSRMKERDVVTWTSMVVAYNQTSRLDDAFRVFSCMPVKNVHTWTALINALVKNKYSNE 260
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG--FNAFHIHVSN 124
AL LF++M+ E T P+ T + V A + + IHG +R N +++V N
Sbjct: 261 ALDLFQQMLE-EKTSPNAFTFVGVLSACADLALIAKGKEIHGLIIRRSSELNFPNVYVCN 319
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LID Y+K G + SA LF I K++VSW S+I+GFA +G+G+EA+ F +M +V +
Sbjct: 320 ALIDLYSKSGDVKSARMLFNLIL--EKDVVSWNSLITGFAQNGLGREALLAFRKMTEVGI 377
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
+PN+VTFL+VL+ACSH GL EGL + M + ++ P ++HY +IDM GR RL +A
Sbjct: 378 RPNKVTFLAVLSACSHTGLSSEGLCILELMEKFYDIEPSLEHYAVMIDMFGRENRLAEAL 437
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+ S P+ +V +W +LGAC H N+++ R + EME G YV++ N+ A
Sbjct: 438 DLISRAPNGSKHVGIWGAVLGACRIHENLDLAIRAAETLFEMEPDNAGRYVMLSNVFAAA 497
Query: 305 WRYGDAERLRRVVDER 320
R+ DA +R++++ER
Sbjct: 498 SRWMDAHNVRKLMEER 513
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 145/304 (47%), Gaps = 39/304 (12%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+++ K FD+LP RN+ +WN ++ + G AR +F+EMP N+VS+ +I +T
Sbjct: 62 MENAQKAFDDLPIRNIHSWNTILASYSRAGFFSQARKVFDEMPHPNIVSYNTLISSFTHH 121
Query: 62 NRSNGALALFRRMVA-CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
++ +FR+M + EIT++++ G + + +HG G F++
Sbjct: 122 GLYVESMNIFRQMQQDFDLLALDEITLVSIAGTCACLGALEFLRQVHGAAIVIGLE-FNM 180
Query: 121 HVSNCLIDTYAKCG------CIFS-------------------------ALKLFEDISVE 149
V N ++D Y KCG IFS A ++F + V
Sbjct: 181 IVCNAIVDAYGKCGDPDASYSIFSRMKERDVVTWTSMVVAYNQTSRLDDAFRVFSCMPV- 239
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
KN+ +WT++I+ + EA++ F++M + PN TF+ VL+AC+ L+ +G +
Sbjct: 240 -KNVHTWTALINALVKNKYSNEALDLFQQMLEEKTSPNAFTFVGVLSACADLALIAKGKE 298
Query: 210 FFDKMVEECEVL--PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC 267
++ L P++ LID+ ++G ++ A + + I + +VV W +L+
Sbjct: 299 IHGLIIRRSSELNFPNVYVCNALIDLYSKSGDVKSARMLFNLILEK--DVVSWNSLITGF 356
Query: 268 SFHG 271
+ +G
Sbjct: 357 AQNG 360
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 78/148 (52%), Gaps = 7/148 (4%)
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
MV PS +F Q+ +R +H + K +F + ++N LID Y+KC
Sbjct: 1 MVPLSDLFPSFDHCARLFSKCIQHKHLRVGMSLHSHLIKTAL-SFDLFLANRLIDMYSKC 59
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
+ +A K F+D+ + +N+ SW +I++ ++ G +A + F+ M PN V++ +
Sbjct: 60 NSMENAQKAFDDLPI--RNIHSWNTILASYSRAGFFSQARKVFDEMP----HPNIVSYNT 113
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVL 221
++++ +H GL E + F +M ++ ++L
Sbjct: 114 LISSFTHHGLYVESMNIFRQMQQDFDLL 141
>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
Length = 605
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 190/316 (60%), Gaps = 3/316 (0%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
++V+W M+ GL+K G + AR LF+ MP RN+VSW ++ GY + R AL +F M
Sbjct: 164 DVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMR 223
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
A + + A G + + +H + E+ G ++ ++D Y KCGC
Sbjct: 224 A-RGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQ-MDEKLATAVVDMYCKCGC 281
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ A ++FE + + K L +W +I GFA+HG G++A++ F RM++ + P+ VT ++VL
Sbjct: 282 VEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREGVAPDDVTLVNVL 341
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
AC+H G++ EG +F+ + + + P ++HYGC++D+ GRAGRLE+A+KV +P E
Sbjct: 342 TACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPME-P 400
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
+V V L GA HG+V++GE + +++E++ G YVL+ N+LA R+ D R+RR
Sbjct: 401 DVGVLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDVARVRR 460
Query: 316 VVDERNALKFPGRSLV 331
++DERN K GRS++
Sbjct: 461 LMDERNVSKEAGRSVI 476
>gi|359474320|ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Vitis vinifera]
Length = 580
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 126/360 (35%), Positives = 195/360 (54%), Gaps = 37/360 (10%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++ S LF ++PERN +WN MI+G V++G+++ ARS F+ MP +N VSW +I GY++
Sbjct: 221 MEKASSLFQQMPERNFASWNAMISGHVEFGDIDSARSFFDAMPQKNNVSWMTMISGYSKC 280
Query: 62 NRSNGA-----------LALFRRMVACEY---------------------TEPSEITILA 89
+ A L LF M+AC +P E+T+ +
Sbjct: 281 GDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLAS 340
Query: 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE 149
V A Q GD+R I Y + G H++ L+D YAKCG I A +LF +
Sbjct: 341 VISACSQLGDLRFGPWIESYMRRLGIE-MDGHLATALLDLYAKCGSIDKAYELFH--GLR 397
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
+K+LV++T++I G ++G +A++ F+ M + PN +TF+ +L A +H GLVEEG +
Sbjct: 398 KKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYR 457
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
F M ++ ++P + HYG ++D+ GRAGRL++A ++ +P + + VW LL AC
Sbjct: 458 CFTSM-KKYNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQ-PHAGVWGALLLACRL 515
Query: 270 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
H NVE GE + E+E G L+ NI A R+ D +RLR+V E+ K PG S
Sbjct: 516 HNNVEFGEIAAQHCFELEPDTTGYRSLLSNIYASGERWDDVKRLRKVTKEKGFSKIPGCS 575
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 141/269 (52%), Gaps = 17/269 (6%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FDE+ ERN+V+WN M+ G +K G+L A+ +F+E+P ++V+SW +I GY R
Sbjct: 164 KMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEK 223
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A +LF++M E + + A+ + GD+ + + ++ ++ +
Sbjct: 224 ASSLFQQM-----PERNFASWNAMISGHVEFGDIDSARSFFDAMPQKNNVSWMT-----M 273
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK--VVL 184
I Y+KCG + SA +LF+ + K+L+ + ++I+ +A + EA+ F M V +
Sbjct: 274 ISGYSKCGDVDSACELFDQVG--GKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNV 331
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
+P+ +T SV++ACS G + G + + + + D L+D+ + G +++A
Sbjct: 332 QPDEMTLASVISACSQLGDLRFG-PWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAY 390
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNV 273
++ G+ + ++V + ++ C +G
Sbjct: 391 ELFHGLRKK--DLVAYTAMILGCGINGKA 417
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 120/278 (43%), Gaps = 31/278 (11%)
Query: 34 EYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV---ACEYTEPSEITILAV 90
+Y S+ + SW I T+ + A AL+ +M C T + A
Sbjct: 56 QYVHSVLHHSKSPDSFSWACAIRFSTQHGQFKEAFALYVQMQRWGLCPTTFALSSALKAC 115
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFN--AFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
++ G + IHG +K GF+ I+V L+D Y K G + A K+F++++
Sbjct: 116 ARIAYRMGGIS----IHGQVQKFGFSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMA- 170
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFLSVLNACSHGGLVEEG 207
+N+VSW S+++G+ G A F+ + QK V+ N S+++ + G +E+
Sbjct: 171 -ERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWN-----SMISGYARAGDMEKA 224
Query: 208 LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC 267
F +M E + + +I G ++ A +P + N V W T++
Sbjct: 225 SSLFQQMPER-----NFASWNAMISGHVEFGDIDSARSFFDAMPQK--NNVSWMTMISGY 277
Query: 268 SFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
S G+V+ + ++ GG +L++N + +
Sbjct: 278 SKCGDVDSACELFDQV-------GGKDLLLFNAMIACY 308
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 19/175 (10%)
Query: 155 SWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH-----GGLVEEGLK 209
SW I HG KEA + +MQ+ L P S L AC+ GG+ G
Sbjct: 72 SWACAIRFSTQHGQFKEAFALYVQMQRWGLCPTTFALSSALKACARIAYRMGGISIHGQ- 130
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
K C I L+D + G +E A K+ + NVV W ++L
Sbjct: 131 -VQKFGFSCGG-DGIYVETALVDFYCKLGDMEIARKMFDEMAER--NVVSWNSMLAGYLK 186
Query: 270 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER---LRRVVDERN 321
G++ + +RV +I + D + ++++G R GD E+ L + + ERN
Sbjct: 187 SGDLVVAQRVFDEIPQ------KDVISWNSMISGYARAGDMEKASSLFQQMPERN 235
>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 621
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 122/333 (36%), Positives = 188/333 (56%), Gaps = 14/333 (4%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM----PCR----NVVSWTGIIDGYT 59
LF E+ ++L +WN +IT + G + A +F ++ C NVVSW+ IIDG+
Sbjct: 235 LFLEMKNKSLASWNALITSHAEAGLCDEALEIFSQLERSGDCPRLRPNVVSWSAIIDGFA 294
Query: 60 RMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
R AL LFRRM + + +TI V + + + IHG+ R +
Sbjct: 295 SKGREKEALELFRRMQHAKIL-ANAVTISTVLSLCAELAALHLGREIHGH-VVRAVMVNN 352
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
I V N L++ YAKCGC+ +FE ERK+L+SW S+I+G+ MHG+G A+E F++M
Sbjct: 353 ILVGNGLVNMYAKCGCLKEGHMIFEK--TERKDLISWNSMITGYGMHGLGMNALETFDQM 410
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
K+ KP+ VTF++VL++CSH GLV EG + FD+M+++ + P ++HY C++D+LGRAG
Sbjct: 411 IKLGFKPDGVTFVAVLSSCSHSGLVHEGRRLFDQMLKKYRIEPQMEHYACMVDLLGRAGL 470
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM-ERGYGGDYVLMY 298
L +A ++ +P N VW LL +C H N E+ E + + R G Y+L+
Sbjct: 471 LREASEIVKNMPVA-PNACVWGALLNSCRMHNNTEIAEETASHLFNLSHRETTGTYMLLS 529
Query: 299 NILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
NI A R+ D+ R+R + K PG+S +
Sbjct: 530 NIYAASGRWEDSARVRTSAKTKGLKKNPGQSWI 562
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 89/361 (24%), Positives = 151/361 (41%), Gaps = 52/361 (14%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR----NVVSWTGIIDG 57
++D LFD + R+ ++WN M++ + A +F+ M N+V+WT +I
Sbjct: 93 MRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLISS 152
Query: 58 YTRMNRSNGALALF--RRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF 115
Y R A+ LF RM E + + ++++ + G ++IH Y K GF
Sbjct: 153 YARSGWHEEAMELFGLMRMKGVEVSGEALAVVISICADL---GAFVRAKIIHEYAVKGGF 209
Query: 116 NAFHIHVS------------------------------NCLIDTYAKCGC------IFSA 139
+ S N LI ++A+ G IFS
Sbjct: 210 EEYSFVKSALICVYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGLCDEALEIFSQ 269
Query: 140 LKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS 199
L+ D R N+VSW++II GFA G KEA+E F RMQ + N VT +VL+ C+
Sbjct: 270 LERSGDCPRLRPNVVSWSAIIDGFASKGREKEALELFRRMQHAKILANAVTISTVLSLCA 329
Query: 200 HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVV 259
+ G + +V V + G L++M + G L++ + +E +++
Sbjct: 330 ELAALHLGREIHGHVVRAVMVNNILVGNG-LVNMYAKCGCLKEGHMIFE--KTERKDLIS 386
Query: 260 WRTLLGACSFHGNVEMGERVTRKILEMER-GYGGDYVLMYNILAGVWRYGDAERLRRVVD 318
W +++ HG +G +M + G+ D V +L+ G RR+ D
Sbjct: 387 WNSMITGYGMHG---LGMNALETFDQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRLFD 443
Query: 319 E 319
+
Sbjct: 444 Q 444
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 68/111 (61%), Gaps = 3/111 (2%)
Query: 104 QLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 163
+ IHG+ + GF + H+HV N LI YAK G + A LF+ +SV ++ +SW +++S +
Sbjct: 62 KTIHGHVLEMGFQS-HLHVGNELIGMYAKLGRMRDARHLFDRMSV--RSYISWNTMVSAY 118
Query: 164 AMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKM 214
A + A+E F+RM+ ++PN VT+ S++++ + G EE ++ F M
Sbjct: 119 AFNYDCNGALEIFQRMESEGMEPNLVTWTSLISSYARSGWHEEAMELFGLM 169
>gi|125573086|gb|EAZ14601.1| hypothetical protein OsJ_04525 [Oryza sativa Japonica Group]
Length = 616
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 188/325 (57%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD++P+R+LV WN MI G + G ++ AR LFEEMP RNV+SW+ +IDGY R N
Sbjct: 234 ELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNE 293
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL F+RM+ C +P + + A Q G + + +H Y EK+ F + V L
Sbjct: 294 ALEFFQRMLRCG-IKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKV-LFDVVVQTAL 351
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y KCG + A +FE S+ +K++V+W +I G HG G +A++ F +M+
Sbjct: 352 IDMYVKCGRLDLAKLIFE--SMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPM 409
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ ++ L+VL +C+H GLV EGL F +M ++ + P ++HYG LID+LGRAGR++QA
Sbjct: 410 DDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNT 469
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E T +W +LL +C H VE+ E ++ + G YVL+ NI A
Sbjct: 470 IETMPMEPTP-ELWGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGM 528
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ D R+R+++ K GRS++
Sbjct: 529 WDDVFRIRKLMSAEGMKKNIGRSVI 553
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 108/248 (43%), Gaps = 26/248 (10%)
Query: 34 EYARSLFE---EMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
++A S+F E R+ W ++ + + +L F RM P T AV
Sbjct: 65 DHADSVFAHLAEEASRHAFPWNTLVRLHAAAS-PRRSLLYFSRMRRAA-VAPDAYTFPAV 122
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A R ++HG + G +A + N LI Y + G S K+F D V
Sbjct: 123 LKACGCAPGCRVGLVVHGEAVRTGLDA-DLFTRNALISFYCRIGDCRSGRKVF-DHGV-- 178
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH-GGLVEEGLK 209
++LVSW S+++G+ G A + F+ M+ + + ++ ++++ G V+ +
Sbjct: 179 RDLVSWNSMVAGYVGCGEVDLAQDLFDEMR----QRDAFSWATMIDGYGEMAGGVDRARE 234
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
FD+M + D+ + +ID R GR+++A + +P NV+ W ++
Sbjct: 235 LFDQMPDR-----DLVCWNSMIDGYARHGRMDEARVLFEEMPER--NVISWSIVID---- 283
Query: 270 HGNVEMGE 277
G V GE
Sbjct: 284 -GYVRFGE 290
>gi|125546973|gb|EAY92795.1| hypothetical protein OsI_14599 [Oryza sativa Indica Group]
Length = 530
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 118/327 (36%), Positives = 186/327 (56%), Gaps = 5/327 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FD++P R+ +TWN M+ + G+++ A +F MP R+VVSW ++ GY R
Sbjct: 171 RVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCRE 230
Query: 67 ALALFRRMVACEY--TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
AL LFR+MV+ P+ T+ + A G + +H Y E+ N ++
Sbjct: 231 ALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMND-DGYLDR 289
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
CLID Y KCG I +AL++FE + +K+L SWT++I G AMHG +A+ F+ MQ +
Sbjct: 290 CLIDMYCKCGSIDNALQVFEK-APRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGI 348
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
P+ VT + VLNAC+HGGLV+EGL +F M + + P I+HYGC+ID+LGR GRL++A
Sbjct: 349 CPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRIGRLQEAY 408
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+ +P + N V+W L AC HGN+E+G+ ++ ++ V++ ++ A
Sbjct: 409 SMIRTMPMD-PNTVIWGAFLSACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSMYAKA 467
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
+ R RR ++ K PG S +
Sbjct: 468 QDWIGLARERREMNSMQVKKTPGCSSI 494
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 131/288 (45%), Gaps = 42/288 (14%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
+++ G ++AR LF+EMP + +V T + + ++ A+A+F MVA +
Sbjct: 49 TALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVA-DGV 107
Query: 81 EPSEITILAVFPAIWQNG-----------------------DV-RNCQLIHGYGE----- 111
P + + A G DV + +LI YGE
Sbjct: 108 FPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELP 167
Query: 112 --KRGFNAFHIHVS---NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 166
+R F+ + N ++ YA+ G + +A ++F +++ R+++VSW ++++G+ +
Sbjct: 168 VSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMF--LAMPRRDVVSWNTVLAGYCVA 225
Query: 167 GMGKEAVENFERM---QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD 223
G +EA+ F +M + PN T ++L AC+ G +E G+ + +E + D
Sbjct: 226 GRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGI-WVHAYIERNRMNDD 284
Query: 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
CLIDM + G ++ A +V P + ++ W T++ + HG
Sbjct: 285 GYLDRCLIDMYCKCGSIDNALQVFEKAPRK-KDLFSWTTVICGLAMHG 331
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 88/220 (40%), Gaps = 15/220 (6%)
Query: 87 ILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI 146
I ++ PA+ +G + IH K G H+ L+ YA G A +LF+++
Sbjct: 14 IKSLSPAV--HGAHLSASSIHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEM 71
Query: 147 SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG---L 203
+ LV T++ G +A+ F M + P+ V L AC G
Sbjct: 72 --PEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFPDNVAVAVALGACHGAGSWTA 129
Query: 204 VEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTL 263
K +V ++PD+ LI + G +G L + +V +PS T + W +
Sbjct: 130 RRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPVSRRVFDDMPSRST--ITWNAM 187
Query: 264 LGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
L + HG V+ + L M R D V +LAG
Sbjct: 188 LHQYARHGKVDTAYEM---FLAMPR---RDVVSWNTVLAG 221
>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g46790, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 197/332 (59%), Gaps = 9/332 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDG 57
L G ++ L R + ++T LV ++G ++YA +F MP RNVVSW+ +I
Sbjct: 198 LMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIAC 257
Query: 58 YTRMNRSNGALALFRRMV-ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN 116
Y + ++ AL FR M+ + + P+ +T+++V A + +LIHGY +RG +
Sbjct: 258 YAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLD 317
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
+ + V + L+ Y +CG + ++F+ + +++VSW S+IS + +HG GK+A++ F
Sbjct: 318 SI-LPVISALVTMYGRCGKLEVGQRVFDRM--HDRDVVSWNSLISSYGVHGYGKKAIQIF 374
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
E M P VTF+SVL ACSH GLVEEG + F+ M + + P I+HY C++D+LGR
Sbjct: 375 EEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGR 434
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
A RL++A K+ + +E VW +LLG+C HGNVE+ ER +R++ +E G+YVL
Sbjct: 435 ANRLDEAAKMVQDMRTE-PGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVL 493
Query: 297 MYNILAGVWRYGDAERLRRVVDERNALKFPGR 328
+ +I A + + +R++++++ R K PGR
Sbjct: 494 LADIYAEAQMWDEVKRVKKLLEHRGLQKLPGR 525
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 119/249 (47%), Gaps = 17/249 (6%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G ++YAR +F++ R + W + T L L+ +M E T V
Sbjct: 126 GSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIG-VESDRFTYTYV 184
Query: 91 FPAIWQNGDVRNCQL----IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI 146
A + N + IH + +RG+++ H+++ L+D YA+ GC+ A +F +
Sbjct: 185 LKACVASECTVNHLMKGKEIHAHLTRRGYSS-HVYIMTTLVDMYARFGCVDYASYVFGGM 243
Query: 147 SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV--LKPNRVTFLSVLNACSHGGLV 204
V +N+VSW+++I+ +A +G EA+ F M + PN VT +SVL AC+ +
Sbjct: 244 PV--RNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAAL 301
Query: 205 EEGLKFFDKMVEEC--EVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
E+G ++ +LP I L+ M GR G+LE ++V + +VV W +
Sbjct: 302 EQGKLIHGYILRRGLDSILPVI---SALVTMYGRCGKLEVGQRVFDRMHDR--DVVSWNS 356
Query: 263 LLGACSFHG 271
L+ + HG
Sbjct: 357 LISSYGVHG 365
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 81/187 (43%), Gaps = 19/187 (10%)
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
LI Y+ G + A K+F+ ++ + W ++ + G G+E + + +M ++ ++
Sbjct: 118 LIGMYSDLGSVDYARKVFD--KTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVE 175
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG---------CLIDMLGR 236
+R T+ VL AC + +++ E+ + G L+DM R
Sbjct: 176 SDRFTYTYVLKACVASECT------VNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYAR 229
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
G ++ A V G+P + NVV W ++ + +G R R+++ + + V
Sbjct: 230 FGCVDYASYVFGGMP--VRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVT 287
Query: 297 MYNILAG 303
M ++L
Sbjct: 288 MVSVLQA 294
>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Vitis vinifera]
Length = 735
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 125/318 (39%), Positives = 184/318 (57%), Gaps = 4/318 (1%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E +L N ++ K GEL +R +F+ M R+V+SW II Y + S ++ +F R
Sbjct: 293 EGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHR 352
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
MV + +T+ AV A +G R + IH K G + ++ V +ID Y KC
Sbjct: 353 MVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLES-NVFVGTSIIDMYCKC 411
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + A K F+ + KN+ SW+++++G+ MHG KEA+E F M +KPN +TF+S
Sbjct: 412 GKVEMARKAFD--RMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVS 469
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VL ACSH GL+EEG +F M E +V P ++HYGC++D+LGRAG L++A + G+
Sbjct: 470 VLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLR 529
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
+ VVW LLGAC H NV++GE RK+ E++ G YVL+ NI A R+ D ER+
Sbjct: 530 -PDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERM 588
Query: 314 RRVVDERNALKFPGRSLV 331
R ++ +K PG SLV
Sbjct: 589 RILMKNSGLVKPPGFSLV 606
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 154/307 (50%), Gaps = 24/307 (7%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E +L + ++ K GEL AR+LF+E+ RN+VSWT +I GY + + ++ AL LF+
Sbjct: 184 EPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKE 243
Query: 74 MVACEYTEPSE-------ITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
+ E + I +++V A + + + +HG+ KRGF + V N L
Sbjct: 244 FLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEG-DLGVENTL 302
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV-VLK 185
+D YAKCG + + ++F+ ++ ++++SW SII+ +A +GM E++E F RM K +
Sbjct: 303 MDAYAKCGELGVSRRVFDGMA--ERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEIN 360
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVE---ECEVLPDIKHYGCLIDMLGRAGRLEQ 242
N VT +VL AC+H G G D++++ E V +IDM + G++E
Sbjct: 361 YNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTS----IIDMYCKCGKVEM 416
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME-RGYGGDYVLMYNIL 301
A K + + NV W ++ HG+ + V EM G +Y+ ++L
Sbjct: 417 ARKAFDRMREK--NVKSWSAMVAGYGMHGHAKEALEV---FYEMNMAGVKPNYITFVSVL 471
Query: 302 AGVWRYG 308
A G
Sbjct: 472 AACSHAG 478
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 19/154 (12%)
Query: 148 VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS-----HGG 202
V++ N+ SW S+I+ A G EA+ F M+K+ LKPNR TF + +CS H G
Sbjct: 112 VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSG 171
Query: 203 --LVEEGLKF-FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVV 259
++ L F F+ PD+ L+DM + G L A + I N+V
Sbjct: 172 RQAHQQALIFGFE---------PDLFVSSALVDMYSKCGELRDARTLFDEISHR--NIVS 220
Query: 260 WRTLLGACSFHGNVEMGERVTRKILEMERGYGGD 293
W +++ + + + ++ L E G GD
Sbjct: 221 WTSMITGYVQNDDAHRALLLFKEFLVEESGSEGD 254
>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
Length = 492
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 121/330 (36%), Positives = 186/330 (56%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + K+FD +P R+LV+WN MI G GE+ AR +F+ R+ SW+ +I Y +
Sbjct: 39 VAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKS 98
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
RS AL L+R M A P IT+++V A G + +H + E +
Sbjct: 99 RRSKEALELWREMHAASII-PDCITLVSVVSACSDLGALAVGAEVHRFVESNRIE-LDLK 156
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LID YAKCG I SA ++F+ + K++ +W+S+I G A HG+G E++ F +M
Sbjct: 157 LGTALIDMYAKCGDIESAQRVFDRMP--EKDVQTWSSMIIGLANHGLGHESLSLFSKMIS 214
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPN VTF+ VL AC+H GLV EG K+F M E + P ++HYGC++D+LGR+G +E
Sbjct: 215 EGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVE 274
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++ + E + ++WR LLGAC H NVE+ E K+ ++ G YVL+ NI
Sbjct: 275 EARQLIRSMTFE-PDTIIWRALLGACRIHKNVEIAEEAMAKLRVLDPLGDGHYVLLSNIY 333
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + +R+ + N + PGRS +
Sbjct: 334 AQANSWEGVAEMRKTIRRDNIQRIPGRSSI 363
>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
Length = 606
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 196/332 (59%), Gaps = 8/332 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D LFD +P R++VT MI G K G + A++LF++MP R+VV++ ++ GY +
Sbjct: 261 IEDAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGYVQN 320
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY-GEKRGFNAFHI 120
AL +F M + P E T++ + AI Q G + +H Y EK+ + +
Sbjct: 321 KCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKATDMHLYIVEKQFYLGGKL 380
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V+ LID Y+KCG I A+ +FE I E K++ W ++I G A+HG+G+ A +++
Sbjct: 381 GVA--LIDMYSKCGSIQHAMLVFEGI--ENKSIDHWNAMIGGLAVHGLGESAFNMLLQIE 436
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
++ + P+ +TF+ VLNACSH GLV+EGL F+ M + ++ P ++HYGC++D+L R+G +
Sbjct: 437 RLSIIPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSI 496
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG-GDYVLMYN 299
E A+ + +P E N V+WRT L ACS H E GE V + ++ ++ GY YVL+ N
Sbjct: 497 ELAKNLIEEMPIE-PNDVIWRTFLTACSHHKEFETGELVAKHLI-LQAGYNPSSYVLLSN 554
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ A + D R+R ++ ER K PG S +
Sbjct: 555 MYASFGMWKDVRRVRTMMKERKIEKIPGCSWI 586
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 146/288 (50%), Gaps = 26/288 (9%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDGYTRMNRS 64
++FD +P+R+ V++N MI G VK G +E AR LF+ MP +N++SW +I GY + +
Sbjct: 170 QMFDRMPQRDSVSYNSMINGYVKCGLIESARELFDLMPREMKNLISWNSMISGYAQTSEG 229
Query: 65 -NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
N A LF M E I+ ++ ++G + + + + +R V
Sbjct: 230 VNIASKLFAEM-----PEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRD-------VV 277
Query: 124 NC--LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
C +ID YAK G + A LF+ + + +++V++ S+++G+ + EA+E F M+K
Sbjct: 278 TCATMIDGYAKLGFVHQAKTLFDQMPL--RDVVAYNSMMAGYVQNKCHMEALEIFNDMEK 335
Query: 182 VV-LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
L P+ T + +L+A + G + + +VE+ L K LIDM + G +
Sbjct: 336 ESHLSPDETTLVIILSAIAQLGRLSKATDMHLYIVEKQFYLGG-KLGVALIDMYSKCGSI 394
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
+ A V GI E ++ W ++G + HG +GE +L++ER
Sbjct: 395 QHAMLVFEGI--ENKSIDHWNAMIGGLAVHG---LGESAFNMLLQIER 437
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 128/324 (39%), Gaps = 55/324 (16%)
Query: 34 EYARSLFEEMPC--------RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEI 85
E+AR +F E + W +I ++ AL LF M+ +
Sbjct: 57 EFARCVFHEYHVCSFSPGEMEDPFLWNAVIKSHSHGKDPRQALLLFCLMLE-NGVSVDKF 115
Query: 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC---------- 135
++ V A + G V+ IHG+ K G + + + NCLI Y KCGC
Sbjct: 116 SLSLVLKACSRLGFVKGGMQIHGFLRKTGLWS-DLFLQNCLIGLYLKCGCLGFARQMFDR 174
Query: 136 ---------------------IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVE 174
I SA +LF+ + E KNL+SW S+ISG+A E V
Sbjct: 175 MPQRDSVSYNSMINGYVKCGLIESARELFDLMPREMKNLISWNSMISGYA---QTSEGVN 231
Query: 175 NFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDML 234
++ + + + +++ S+++ G +E+ FD M D+ +ID
Sbjct: 232 IASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRR-----DVVTCATMIDGY 286
Query: 235 GRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY 294
+ G + QA+ + +P + +VV + +++ A M +E E D
Sbjct: 287 AKLGFVHQAKTLFDQMP--LRDVVAYNSMM-AGYVQNKCHMEALEIFNDMEKESHLSPDE 343
Query: 295 VLMYNILAGVWRYGDAERLRRVVD 318
+ IL+ + + G RL + D
Sbjct: 344 TTLVIILSAIAQLG---RLSKATD 364
>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
Length = 500
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 120/331 (36%), Positives = 192/331 (58%), Gaps = 6/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+K +FD + ++N VTWN MI G ++ G+++ A +F++MP R+++SWT +I+G+
Sbjct: 125 VKKARCVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVNK 184
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
ALA FR M +P + I+A A G + +H Y + F ++
Sbjct: 185 GFHEEALAWFREM-QISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKN-NVR 242
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VSN LID Y +CGC+ A ++F+ + E++ +VSW S+I GFA +G E++ F +MQ+
Sbjct: 243 VSNSLIDLYCRCGCVEFARQVFDKM--EKRTVVSWNSVIVGFAANGNAHESLVYFRKMQE 300
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KP+ VTF L ACSH GLVEEGL++F M+ + + P I+HYGCL+D+ RAGRLE
Sbjct: 301 ERFKPDAVTFTGALTACSHVGLVEEGLRYFQIMISDYRISPRIEHYGCLVDLYSRAGRLE 360
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHG-NVEMGERVTRKILEMERGYGGDYVLMYNI 300
A K+ +P + N VV +LL AC HG N + E++ + + ++ +YV++ N+
Sbjct: 361 DALKLVQSMPMK-PNEVVIGSLLAACRNHGNNTVLAEKLMKHLTDLNVKSHSNYVILSNM 419
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ A ++RR + K PG S +
Sbjct: 420 YAADGKWEGASKMRRKMKGLGLKKQPGFSSI 450
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 121/272 (44%), Gaps = 39/272 (14%)
Query: 47 NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAI--WQNGDVRNCQ 104
N VSWT I TR R A F M EP+ IT +A+ + +G
Sbjct: 35 NTVSWTSRITLLTRNGRLAEAAKEFSDM-RLAGVEPNHITFIAILSGCGDFPSGSEALGD 93
Query: 105 LIHGYGEKRGFNAFHIHVS-------------------------------NCLIDTYAKC 133
L+HGY K G + H+ V N +ID Y +
Sbjct: 94 LLHGYACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCVFDYMEDKNSVTWNTMIDGYMRS 153
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + +A K+F+ + ++L+SWT++I+GF G +EA+ F MQ +KP+ V ++
Sbjct: 154 GQVDNAAKMFDKMP--ERDLISWTAMINGFVNKGFHEEALAWFREMQISGVKPDYVAIIA 211
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
LNAC++ G + GL + + V + +++ LID+ R G +E A +V + E
Sbjct: 212 ALNACTNLGALSFGL-WVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKM--E 268
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
VV W +++ + +GN RK+ E
Sbjct: 269 KRTVVSWNSVIVGFAANGNAHESLVYFRKMQE 300
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 10/142 (7%)
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
+N VSWTS I+ +G EA + F M+ ++PN +TF+++L+ C G G +
Sbjct: 34 ENTVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIAILSGC---GDFPSGSEA 90
Query: 211 FDKMVE--ECEVLPDIKHY---GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
++ C++ D H +I M + GR+++A V + E N V W T++
Sbjct: 91 LGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCVFDYM--EDKNSVTWNTMID 148
Query: 266 ACSFHGNVEMGERVTRKILEME 287
G V+ ++ K+ E +
Sbjct: 149 GYMRSGQVDNAAKMFDKMPERD 170
>gi|297833170|ref|XP_002884467.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330307|gb|EFH60726.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 657
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 118/330 (35%), Positives = 197/330 (59%), Gaps = 8/330 (2%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
+ FD L ++++ +WN M+ G V+ G++E A+++F++MP R++VSW ++ Y++
Sbjct: 287 AKRAFDALKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPQRDLVSWNSLLFCYSKKGCD 346
Query: 65 NGAL-ALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF--NAFHIH 121
A+ LF M+ E +P +T++++ NG++ + + +HG + +AF
Sbjct: 347 QRAVRELFYEMLIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLMIRLQLEGDAF--- 403
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+S+ LID Y KCG I A +F+ + K++ WTS+I+GFA HG G++A++ F+RMQ+
Sbjct: 404 LSSALIDMYCKCGLIERAFMVFK--TATEKDVPLWTSMITGFAFHGYGQQALQLFKRMQE 461
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ PN+VT L+VL ACSH GLVEEGL F M E+ P+ +HYG L+D+L RAGRLE
Sbjct: 462 EDVTPNKVTLLAVLTACSHSGLVEEGLHVFYHMKEKFGFHPETEHYGSLVDLLCRAGRLE 521
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A+ + + +W ++L AC ++E E ++L++E G YVL+ NI
Sbjct: 522 EAKDIVQNKMPMRPSQSMWGSILSACREGEDIETAELALSELLKLEPEKEGGYVLLSNIY 581
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A V R+G +++ R ++ R K G S V
Sbjct: 582 ATVGRWGYSDKTREAMESRGVKKTAGYSSV 611
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 144/300 (48%), Gaps = 40/300 (13%)
Query: 20 WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEY 79
WN ++ ++ G L +A +F MP +V S+ +I GY + AL L+ +MV+ +
Sbjct: 168 WNSLVKFYMELGSLGFAEKVFAIMPQPDVSSFNVMIVGYAKQGFGLEALELYYKMVS-DG 226
Query: 80 TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG-FNAFHIHVSNCLIDTYAKCGCIFS 138
EP E T+L + D+R + +HG+ E+RG + ++ + N L+D Y KC
Sbjct: 227 IEPDEYTLLGLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILRNALLDMYFKCKESGL 286
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM------------------- 179
A + F+ ++++K++ SW +++ GF G + A F++M
Sbjct: 287 AKRAFD--ALKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPQRDLVSWNSLLFCYSKKG 344
Query: 180 --QKVV------------LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIK 225
Q+ V +KP+RVT +S+++ ++ G + G ++ ++ ++ D
Sbjct: 345 CDQRAVRELFYEMLIVEKVKPDRVTMVSLISGAANNGELSHG-RWVHGLMIRLQLEGDAF 403
Query: 226 HYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
LIDM + G +E+A V + +V +W +++ +FHG + ++ +++ E
Sbjct: 404 LSSALIDMYCKCGLIERAFMVFKTATEK--DVPLWTSMITGFAFHGYGQQALQLFKRMQE 461
>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
Length = 704
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 119/325 (36%), Positives = 195/325 (60%), Gaps = 4/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FD + +++ +W M+ K G+LE A LF++MP RNVVSW+ +I Y+++N+
Sbjct: 301 EVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEE 360
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ LFR M+A +P + T+++V A Q G + + I+ +++ N L
Sbjct: 361 AVWLFREMIAAG-VDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNAL 419
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID +AKCG + A KLF++++ +N+VSW ++I A+HG +EA+ FE+++ + P
Sbjct: 420 IDMFAKCGDVGEASKLFDEMA--ERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVP 477
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+++TFL +L +CSH GLV EG ++F +M + P ++HY C+ID+LG+ G LE+A +V
Sbjct: 478 DQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEV 537
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
A G+P E + W LL AC HGNVE+G V K++E++ G YVLM I A +
Sbjct: 538 ARGMPME-ADEAGWGALLNACRMHGNVEIGACVADKLVELDPSDSGIYVLMSQIYASKNK 596
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ + LR + +R K PG S +
Sbjct: 597 WDQVKMLRMTMRDRGVKKNPGCSSI 621
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 144/297 (48%), Gaps = 32/297 (10%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
+++ N ++ L+ A +F+EMP R+VVSWT ++DGY R ++ A LF RMV
Sbjct: 177 SVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMV 236
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
P+ +T++A AI Q G + ++H Y + G A +++ N L+D + KCGC
Sbjct: 237 VVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGV-ARSVNLDNALVDMFGKCGC 295
Query: 136 IFSALKLFEDISVE-----------------------------RKNLVSWTSIISGFAMH 166
+ A ++F+ + V+ R+N+VSW+ +I+ ++
Sbjct: 296 VRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQL 355
Query: 167 GMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH 226
+EAV F M + P T +SVL+AC+ G ++ G ++ + ++ +
Sbjct: 356 NQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNL 415
Query: 227 YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
LIDM + G + +A K+ + NVV W T++ A + HG E R+ ++
Sbjct: 416 GNALIDMFAKCGDVGEASKLFDEMAER--NVVSWNTMIMAHAVHGQSEEAIRLFEQL 470
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 116/246 (47%), Gaps = 11/246 (4%)
Query: 44 PCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW-----QNG 98
P N ++ G+ R AL LFRR+V + + AV A G
Sbjct: 97 PGPNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGG 156
Query: 99 DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 158
+ IH K GF + V N L+ YA + A K+F+++ +++VSWT+
Sbjct: 157 TPSGGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMP--ERDVVSWTT 214
Query: 159 IISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE 217
++ G+A G+ EA F RM V ++PN VT ++ ++A GL+ G+ K V E
Sbjct: 215 LVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGI-MLHKYVTE 273
Query: 218 CEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGE 277
V + L+DM G+ G + A +V G+ E+ +V W +++ A + G++E E
Sbjct: 274 GGVARSVNLDNALVDMFGKCGCVRYAREVFDGM--EVKDVYSWTSMVNAYAKCGDLESAE 331
Query: 278 RVTRKI 283
++ + +
Sbjct: 332 QLFKDM 337
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 37/166 (22%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ SKLFDE+ ERN+V+WN MI G+ E A LFE++ N+V
Sbjct: 431 EASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIV-------------- 476
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
P +IT L + + +G V + + E F V
Sbjct: 477 ------------------PDQITFLGLLASCSHSGLVSEGR--RYFKEMEMFYRIEPRVE 516
Query: 124 N--CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 167
+ C+ID K G + A ++ + +E W ++++ MHG
Sbjct: 517 HYACMIDLLGKVGLLEEAFEVARGMPMEADE-AGWGALLNACRMHG 561
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 116/320 (36%), Positives = 194/320 (60%), Gaps = 7/320 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRN--VVSWTGIIDGYTRMNRSNGALALF 71
+ N V N ++ VK L+ A +FEEM R+ + SWT I+ GY R+ AL F
Sbjct: 194 KSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYARIGCYADALEFF 253
Query: 72 RRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYA 131
RRM EP EI++++V P Q G + + IH Y +K GF +I V N LI+ YA
Sbjct: 254 RRMQMVG-IEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGF-LRNICVCNALIEMYA 311
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191
KCG I +LF+ + + ++++SW+++I G A HG +EA+E F+ MQK ++P+ +TF
Sbjct: 312 KCGSIDQGRRLFDQM--KERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITF 369
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
+ +L AC+H GL+ EGL++F+ M + + P ++HYGCL+++LG +GRL+QA ++ +P
Sbjct: 370 VGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMP 429
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
+ + +W +LL +C HGN+++ +LE+E G+YVL+ N+ A + ++
Sbjct: 430 RK-PDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVS 488
Query: 312 RLRRVVDERNALKFPGRSLV 331
R+R+++ ++ K PG S +
Sbjct: 489 RMRKLMRSKSMKKTPGCSSI 508
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 135/273 (49%), Gaps = 12/273 (4%)
Query: 7 KLFDELPERNLVTWNVMITGLVK----WGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
K+ + + +L + ++T +V +GE EYA LF+ + N + +I Y
Sbjct: 77 KIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHNK 136
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNC----QLIHGYGEKRGFNAF 118
A+ ++++M+ + E FP + ++ C + +HG+ K G +
Sbjct: 137 VYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSN 196
Query: 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER 178
+ V N L++ Y KC + A ++FE+++ + SWT+I+SG+A G +A+E F R
Sbjct: 197 TV-VENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYARIGCYADALEFFRR 255
Query: 179 MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
MQ V ++P+ ++ +SVL C+ G +E G K+ ++ L +I LI+M + G
Sbjct: 256 MQMVGIEPDEISLVSVLPDCAQLGALELG-KWIHIYADKAGFLRNICVCNALIEMYAKCG 314
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
++Q ++ + +V+ W T++ + HG
Sbjct: 315 SIDQGRRLFDQMKER--DVISWSTMIVGLANHG 345
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 35/179 (19%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ G +LFD++ ER++++W+ MI GL G A LF+EM +
Sbjct: 316 IDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKI------------- 362
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH-I 120
EPS IT + + A G + N L + KR +N +
Sbjct: 363 -------------------EPSIITFVGLLTACAHAG-LLNEGLRYFESMKRDYNIEPGV 402
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
CL++ G + AL+L + + + + + W S++S HG K AV E +
Sbjct: 403 EHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPI-WGSLLSSCRSHGNLKIAVIAMEHL 460
>gi|224066751|ref|XP_002302197.1| predicted protein [Populus trichocarpa]
gi|222843923|gb|EEE81470.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 129/326 (39%), Positives = 188/326 (57%), Gaps = 10/326 (3%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LF+++P+RN W+ MI+G K G ++ AR++F+ +P RN+V+W +I GY++ A
Sbjct: 109 LFEDMPQRNFFVWSSMISGYCKIGNVKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEA 168
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L F +M Y EP E+T++ V A Q + + +H +G + V N L+
Sbjct: 169 LDAFGKMQNEGY-EPDEVTVVGVLSACAQLSLLDVGKDVHKMICAKGMK-LNEFVVNALV 226
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D YAKCG + A +FE ++ KN W S+ISGFA+HG KEA+E F RM++ KP+
Sbjct: 227 DMYAKCGDLTGARLIFERMT--NKNNACWNSMISGFAVHGKTKEALEFFGRMEESNEKPD 284
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TFLSVL+AC HGG VE GL+ F KM E + IKHYGCL+D+LGRAGR++ A +
Sbjct: 285 EITFLSVLSACVHGGFVEVGLEIFSKM-ERYGLSASIKHYGCLVDLLGRAGRIQDAYHLI 343
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKIL----EMERGYGGDYVLMYNILAG 303
+P + N VW LGAC H + +M E+V + ++ G Y L+ NI AG
Sbjct: 344 KSMPMK-PNDTVWGAFLGACRIHMDNDMVEQVVEDVCTSDSSVDSGNDPHYALLLNIYAG 402
Query: 304 VWRYGDAERLRRVVDERNALKFPGRS 329
+ A R+ V+ +R K GRS
Sbjct: 403 SGSWEKAGRVSMVMADRGLQKTSGRS 428
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 141/275 (51%), Gaps = 17/275 (6%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ D KLF+ +PERN+VTWN MI+G K G+++ A LF++M RN VSW +IDG+
Sbjct: 8 IPDSRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEMIDGFA-- 65
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
RS +A R + + +T + G++ +L+ +R F
Sbjct: 66 -RSGDMVAARRTFNEVPFELKNVVTWTVMIDGYASKGEMEAARLLFEDMPQRNF-----F 119
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V + +I Y K G + A +F+ + V +NLV+W S+I G++ +G +EA++ F +MQ
Sbjct: 120 VWSSMISGYCKIGNVKEARAIFDRVPV--RNLVNWNSLICGYSQNGFCEEALDAFGKMQN 177
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY--GCLIDMLGRAGR 239
+P+ VT + VL+AC+ L++ G K KM+ C + + L+DM + G
Sbjct: 178 EGYEPDEVTVVGVLSACAQLSLLDVG-KDVHKMI--CAKGMKLNEFVVNALVDMYAKCGD 234
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
L A + + ++ N W +++ + HG +
Sbjct: 235 LTGARLIFERMTNK--NNACWNSMISGFAVHGKTK 267
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 76/154 (49%), Gaps = 11/154 (7%)
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
YAKCG I + KLFE + +N+V+W ++ISG+ +G K A F++M N V
Sbjct: 2 YAKCGDIPDSRKLFE--YMPERNVVTWNAMISGYGKNGDMKSASVLFDKMS----TRNAV 55
Query: 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
+++ +++ + G + + F+++ E L ++ + +ID G +E A +
Sbjct: 56 SWIEMIDGFARSGDMVAARRTFNEVPFE---LKNVVTWTVMIDGYASKGEMEAARLLFED 112
Query: 250 IPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
+P N VW +++ GNV+ + ++
Sbjct: 113 MPQR--NFFVWSSMISGYCKIGNVKEARAIFDRV 144
>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
Length = 595
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 112/318 (35%), Positives = 184/318 (57%), Gaps = 4/318 (1%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
R+ + ++ G+ + AR LF EMP R+ V+W +I R R+ AL LF M
Sbjct: 152 RDALLATSLMACYANRGDGDGARKLFGEMPARDAVAWNVLISCCARNRRTKDALKLFEEM 211
Query: 75 VACEY-TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
+ EP ++T + + A G + + + Y E+ G+ A + V N LI Y++C
Sbjct: 212 RGRDSGAEPDDVTCILLLQACTSLGALDFGEQVWAYAEEHGYGA-KLKVRNSLIAMYSRC 270
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
GC+ A ++F +K++V+W+++ISG A +G G +A+ FE M + + P+ TF
Sbjct: 271 GCVDKAYRVF--CGTPQKSVVTWSAMISGLAANGFGDDAISAFEEMIRSDVAPDEQTFTG 328
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VL+ACSH GLV+EG +FFD M E + P+++HYGC++D++GRAG L++A ++ +
Sbjct: 329 VLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYELVTNEMKV 388
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
+ +WRTLLGAC HG+V++GERV ++E++ GDYVL+ N A V + +
Sbjct: 389 APDATIWRTLLGACRIHGHVDLGERVISNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEV 448
Query: 314 RRVVDERNALKFPGRSLV 331
R+++ E+ PG + V
Sbjct: 449 RKLMQEKGIQTTPGCTTV 466
>gi|91806359|gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 118/336 (35%), Positives = 199/336 (59%), Gaps = 11/336 (3%)
Query: 1 FLKDGS-----KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGII 55
F+K G +LFDE+ + ++TW MI G +++ AR LF+ MP RN+VSW +I
Sbjct: 186 FVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMI 245
Query: 56 DGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF 115
GY + + + LF+ M A +P ++TIL+V PAI G + + H + +++
Sbjct: 246 GGYCQNKQPQEGITLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKL 305
Query: 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
+ + V ++D Y+KCG I A ++F+++ K + SW ++I G+A++G + A++
Sbjct: 306 DK-KVKVCTAILDMYSKCGEIEKAKRIFDEMP--EKQVASWNAMIHGYALNGNARAALDL 362
Query: 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
F M + KP+ +T L+V+ AC+HGGLVEEG K+F M E + I+HYGC++D+LG
Sbjct: 363 FVTMM-IEEKPDEITMLAVITACNHGGLVEEGRKWFHVM-REMGLNAKIEHYGCMVDLLG 420
Query: 236 RAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV 295
RAG L++AE + + +P E N ++ + L AC + ++E ER+ +K +E+E G+YV
Sbjct: 421 RAGSLKEAEDLITNMPFE-PNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYV 479
Query: 296 LMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
L+ N+ A R+ D ++ V+ + A K G SL+
Sbjct: 480 LLRNLYAADKRWDDFGMVKNVMRKNQAKKEVGCSLI 515
>gi|347954492|gb|AEP33746.1| chloroplast biogenesis 19, partial [Barbarea verna]
Length = 494
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 189/327 (57%), Gaps = 10/327 (3%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FD + ++N VTWN MI G ++ G++ A LF+EMP R+++SWT +I+G+ + A
Sbjct: 125 VFDFMEDKNSVTWNTMIDGYMRSGQVNNAVKLFDEMPERDLISWTAMINGFVKKGFHEEA 184
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
LA FR M +P + I+A A G + +H Y + F +I VSN LI
Sbjct: 185 LAWFREM-QISGVKPDYVAIIAALAACTHLGALSFGLWVHRYVMNQDFKN-NIRVSNSLI 242
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y +CGC+ A ++F+ + E++ +VSW S+I GFA +G E++ F +MQ+ KP+
Sbjct: 243 DLYCRCGCVEFAREVFDKM--EKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPD 300
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
VTF L ACSH GLVEEGL++F M + + P I+HYGCL+D+ RAGRLE A V
Sbjct: 301 AVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEDALNVV 360
Query: 248 SGIPSEITNVVVWRTLLGACSFHG-NVEMGERVTRKILEMERGYGGDYVLMYNILA--GV 304
+P + N VV +LL AC HG N + ER+ + + ++ +YV++ N+ A G+
Sbjct: 361 QSMPMK-PNEVVIGSLLAACRNHGNNTVLAERLVKHLSDLNVKSHSNYVILSNMYAADGI 419
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
W A ++RR + K PG S V
Sbjct: 420 WE--GASKMRRKMKGLGLKKQPGFSSV 444
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 130/308 (42%), Gaps = 47/308 (15%)
Query: 40 FEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGD 99
+ VSWT I +R R A F M EP+ IT +A+ GD
Sbjct: 22 LNQSTSETTVSWTSRITLLSRNGRLAEAAKEFSSM-RLAGVEPNHITFIALLSGC---GD 77
Query: 100 VRNCQ-----LIHGYGEKRGFNAFHIHVS------------------------------- 123
V + L+HGY K G + H+ V
Sbjct: 78 VSSGSEALGDLLHGYACKLGLDRTHVMVGTAILGMYSKRGRFGKARLVFDFMEDKNSVTW 137
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N +ID Y + G + +A+KLF+++ ++L+SWT++I+GF G +EA+ F MQ
Sbjct: 138 NTMIDGYMRSGQVNNAVKLFDEMP--ERDLISWTAMINGFVKKGFHEEALAWFREMQISG 195
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
+KP+ V ++ L AC+H G + GL + + V + +I+ LID+ R G +E A
Sbjct: 196 VKPDYVAIIAALAACTHLGALSFGL-WVHRYVMNQDFKNNIRVSNSLIDLYCRCGCVEFA 254
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
+V + E VV W +++ + +GN RK+ E G+ D V L
Sbjct: 255 REVFDKM--EKRTVVSWNSVIVGFAANGNAHESLVYFRKM--QEEGFKPDAVTFTGALTA 310
Query: 304 VWRYGDAE 311
G E
Sbjct: 311 CSHVGLVE 318
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 13/150 (8%)
Query: 129 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR 188
T K I LKL + S + VSWTS I+ + +G EA + F M+ ++PN
Sbjct: 9 TRQKSSQIQRILKLNQSTS---ETTVSWTSRITLLSRNGRLAEAAKEFSSMRLAGVEPNH 65
Query: 189 VTFLSVLNACSHGGLVEEGLKFFDKMVE--ECEVLPDIKHY---GCLIDMLGRAGRLEQA 243
+TF+++L+ C G V G + ++ C++ D H ++ M + GR +A
Sbjct: 66 ITFIALLSGC---GDVSSGSEALGDLLHGYACKLGLDRTHVMVGTAILGMYSKRGRFGKA 122
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNV 273
V + E N V W T++ G V
Sbjct: 123 RLVFDFM--EDKNSVTWNTMIDGYMRSGQV 150
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 115/328 (35%), Positives = 187/328 (57%), Gaps = 5/328 (1%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ ++F ++ +N+V W ++T +K G+L A +F EM RNVVSW +I GY +
Sbjct: 439 EAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGD 498
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
L M E +P +TI+++ A + +L+H K G + + V+
Sbjct: 499 IAKVFELLSSM-KVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTV-VA 556
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
LI Y+KCG + A +F+ IS ++ V+W ++++G+ HG+G EAV+ F+RM K
Sbjct: 557 TSLIGMYSKCGEVTEARTVFDKIS--NRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKER 614
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
+ PN +TF +V++AC GLV+EG + F M E+ + P +HYGC++D+LGRAGRL++A
Sbjct: 615 VPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEA 674
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
E+ +P E ++ VW LLGAC H NV++ E IL +E YV + NI A
Sbjct: 675 EEFIQRMPCE-PDISVWHALLGACKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQ 733
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
R+ D+ ++R+V+D++ K G S +
Sbjct: 734 AGRWDDSTKVRKVMDDKGLKKDRGESSI 761
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 166/371 (44%), Gaps = 60/371 (16%)
Query: 2 LKDGSKLFDELPERNLVT----WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDG 57
+DG + +L E L N +I K+G++ +F M R+VV+W+ +I
Sbjct: 94 FEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAA 153
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
Y N A F RM EP+ IT L++ A + + IH + G
Sbjct: 154 YAGNNHPAKAFDTFERMKDAN-IEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMET 212
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
+ V+ LI Y+KCG I A ++F+ + + +N+VSWT+II A H EA E +E
Sbjct: 213 -DVAVATALITMYSKCGEISLACEIFQKM--KERNVVSWTAIIQANAQHRKLNEAFELYE 269
Query: 178 RMQKVVLKPNRVTFLSVLNACS-----------HGGLVEEGL------------------ 208
+M + + PN VTF+S+LN+C+ H + E GL
Sbjct: 270 KMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCN 329
Query: 209 ------KFFDKMVEECEVLPDIKHYGCLIDMLGRAG-----RLEQAEKVASGIPSE--IT 255
+ FD+M + D+ + +I ++G L++ ++ + E
Sbjct: 330 CIQDARETFDRMSKR-----DVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFP 384
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL---MYNILAGVWRYGDAER 312
N V + ++L ACS HG +E G ++ +I ++ G+ D L ++N+ A +AE+
Sbjct: 385 NKVTFMSILKACSVHGALEQGRQIHAEISKV--GFESDRSLQTAIFNMYAKCGSIYEAEQ 442
Query: 313 LRRVVDERNAL 323
+ ++ +N +
Sbjct: 443 VFSKMENKNVV 453
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 120/299 (40%), Gaps = 60/299 (20%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D + FD + +R++++W+ MI G YA+S GY
Sbjct: 331 IQDARETFDRMSKRDVISWSAMIAG--------YAQS------------------GYQDK 364
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ L RM E P+++T +++ A +G + + IH K GF +
Sbjct: 365 ESLDEVFQLLERMRR-EGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDR-S 422
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDI----------------------SVER-------KN 152
+ + + YAKCG I+ A ++F + S E+ +N
Sbjct: 423 LQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRN 482
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
+VSW +I+G+A G + E M+ +P+RVT +S+L AC +E G K
Sbjct: 483 VVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERG-KLVH 541
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ + D LI M + G + +A V I + T V W +L HG
Sbjct: 542 AEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDT--VAWNAMLAGYGQHG 598
>gi|449446173|ref|XP_004140846.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 488
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 121/325 (37%), Positives = 183/325 (56%), Gaps = 6/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LF+++PE+N+V+W MI+ K G+L AR F +MP RNVVSW +I Y +
Sbjct: 159 ELFEKMPEKNVVSWTSMISAYAKAGDLATARMFFNKMPQRNVVSWNSMISSYVQHGDFQE 218
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL LF +M++ E P T ++VF A G++ IH + F+ + + L
Sbjct: 219 ALDLFNQMLS-EGITPDGYTFVSVFSACSHLGNLMLGTKIHYAIDD--FSQLGVIAATAL 275
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
I+ YAKCG I A LF I + +K++ W ++ A+HG ++A++ F MQK LKP
Sbjct: 276 IEMYAKCGDINRAFNLF--IKIGKKDVFFWNVMLKSLALHGQAQDALKLFSLMQKQGLKP 333
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N TFL L ACSHGG+VEEG FD M +E ++ P I+H+GC++D+L R GRLE+A V
Sbjct: 334 NDFTFLGALFACSHGGMVEEGQTIFDMMEKEYKIRPRIEHFGCIVDLLSRNGRLEEALDV 393
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E +V +W LLG C G+ + + + ++ GG +V N+ A V +
Sbjct: 394 VDKMPFE-ADVAIWGALLGGCKLRGDFKRAGEIVERARKLRSKEGGIHVSFSNMYASVEQ 452
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ +A R ++ N LK G+S V
Sbjct: 453 WAEAVNAREKMENENILKKTGQSSV 477
>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
Length = 605
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 190/316 (60%), Gaps = 3/316 (0%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
++V+W M+ GL+K G + AR LF+ MP RN+VSW ++ GY + R AL +F M
Sbjct: 164 DVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMR 223
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
A + + A G + + +H + E+ G ++ ++D Y KCGC
Sbjct: 224 A-RGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQ-MDEKLATAVVDMYCKCGC 281
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ A ++FE + + K L +W +I GFA+HG G++A++ F RM++ + P+ VT ++VL
Sbjct: 282 VEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAPDDVTLVNVL 341
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
AC+H G++ EG +F+ + + + P ++HYGC++D+ GRAGRLE+A+KV +P E
Sbjct: 342 TACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPME-P 400
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
+V V L GA HG+V++GE + +++E++ G YVL+ N+LA R+ D R+RR
Sbjct: 401 DVGVLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDVARVRR 460
Query: 316 VVDERNALKFPGRSLV 331
++DERN K GRS++
Sbjct: 461 LMDERNVSKEAGRSVI 476
>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 125/319 (39%), Positives = 185/319 (57%), Gaps = 8/319 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E +L N +I +G L AR+LF+E R++VS+ +I GY +N+ AL LF
Sbjct: 67 ESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGE 126
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVR-NCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK 132
M E+T++AV A + G +L H Y E FN I ++ ++D YAK
Sbjct: 127 M-----QNSDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTI-LTAAVMDMYAK 180
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
CG I SAL++F + K + S+I+G A HG+G+ A+ F + LKP+ VTF+
Sbjct: 181 CGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFV 240
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
VL AC H GL+EEG K F+ M + P ++HYGC++D+LGR G LE+A + +P
Sbjct: 241 GVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPF 300
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312
E N V+WR LL AC HGNV++GE +K+LEME +G YVL+ NILA ++ +A +
Sbjct: 301 E-ANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQ 359
Query: 313 LRRVVDERNALKFPGRSLV 331
+R+V+++ K PG S +
Sbjct: 360 VRKVMEDHGIRKPPGWSYI 378
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 120/268 (44%), Gaps = 9/268 (3%)
Query: 51 WTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYG 110
W +I GY+R + A+ L+ M+A P+ T + + + + +H +
Sbjct: 2 WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61
Query: 111 EKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 170
K GF + + V N LI Y+ G + A LF++ V ++LVS+ ++I G+A +
Sbjct: 62 IKHGFES-DLFVRNALIHLYSVFGNLNLARTLFDESLV--RDLVSYNTMIKGYAEVNQPE 118
Query: 171 EAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCL 230
A+ F MQ + VT ++VL+AC+ G + G + + + +E + +
Sbjct: 119 SALCLFGEMQ----NSDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAV 174
Query: 231 IDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 290
+DM + G ++ A ++ + + V+ +++ + HG E V R+++ G
Sbjct: 175 MDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELI--STGL 232
Query: 291 GGDYVLMYNILAGVWRYGDAERLRRVVD 318
D V +L G E +++ +
Sbjct: 233 KPDEVTFVGVLCACGHSGLIEEGKKLFE 260
>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
Length = 631
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 121/324 (37%), Positives = 190/324 (58%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
L++ L + NLV+WN MI G +K G+ + A LF +MP ++V+W +I GY + A
Sbjct: 183 LWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDA 242
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
+ +F M+ + PS T+++V A+ + + IH Y EK GF I + LI
Sbjct: 243 VKMFFMMLKLG-SRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGI-LGTSLI 300
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
+ YAKCGCI SAL +F ++++K + WT+II G +HGM A+ F M K LKPN
Sbjct: 301 EMYAKCGCIESALTVFR--AIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPN 358
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+ F+ VLNAC+H GLV++G ++FD M+ E ++ P ++HYGCL+D+L RAG LE+A+
Sbjct: 359 AIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTI 418
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P N V+W +LLG HG +++GE ++++E+ G Y+L+ N+ A +
Sbjct: 419 ENMPIS-PNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMW 477
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
+R ++ +R K PG S V
Sbjct: 478 EKVSHVREMMYKRGFRKDPGCSSV 501
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 84/331 (25%), Positives = 140/331 (42%), Gaps = 50/331 (15%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
K +L YARS+F+ + R+++ W II Y S+ + LF +V EY P T+
Sbjct: 62 KINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVH-EYL-PDNFTLP 119
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI-- 146
V + G V+ + IHG K GF + + V L++ Y+KCG I A K+F+ +
Sbjct: 120 CVIKGCARLGVVQEGKQIHGLALKIGFGS-DVFVQGSLVNMYSKCGEIDCARKVFDGMID 178
Query: 147 -------SVERKNLVSWTS-------------------------------IISGFAMHGM 168
S+ NLVSW + +I+G+ ++G
Sbjct: 179 KDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQ 238
Query: 169 GKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG 228
+AV+ F M K+ +P+ T +SVL+A S ++ +G ++ +E+ D
Sbjct: 239 FMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKG-RWIHSYMEKNGFELDGILGT 297
Query: 229 CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM-E 287
LI+M + G +E A V I + V W ++ HG M LEM +
Sbjct: 298 SLIEMYAKCGCIESALTVFRAIQKK--KVGHWTAIIVGLGIHG---MANHALALFLEMCK 352
Query: 288 RGYGGDYVLMYNILAGVWRYGDAERLRRVVD 318
G + ++ +L G + R+ D
Sbjct: 353 TGLKPNAIIFIGVLNACNHAGLVDDGRQYFD 383
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 11/162 (6%)
Query: 106 IHGYGEKRG-FNAFHIHVSNCLIDTYA--KCGCIFSALKLFEDISVERKNLVSWTSIISG 162
+H + K FN H VS+ L+ Y+ K + A +F+ I +R++L+ W +II
Sbjct: 35 LHAFSLKTAIFN--HPFVSSRLLALYSDPKINDLGYARSIFDRI--QRRSLIHWNTIIKC 90
Query: 163 FAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP 222
+ + + + F + L P+ T V+ C+ G+V+EG K + +
Sbjct: 91 YVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEG-KQIHGLALKIGFGS 148
Query: 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
D+ G L++M + G ++ A KV G+ + +VV+W +L+
Sbjct: 149 DVFVQGSLVNMYSKCGEIDCARKVFDGMIDK--DVVLWNSLI 188
>gi|296082839|emb|CBI22140.3| unnamed protein product [Vitis vinifera]
Length = 428
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 126/360 (35%), Positives = 195/360 (54%), Gaps = 37/360 (10%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++ S LF ++PERN +WN MI+G V++G+++ ARS F+ MP +N VSW +I GY++
Sbjct: 69 MEKASSLFQQMPERNFASWNAMISGHVEFGDIDSARSFFDAMPQKNNVSWMTMISGYSKC 128
Query: 62 NRSNGA-----------LALFRRMVACEY---------------------TEPSEITILA 89
+ A L LF M+AC +P E+T+ +
Sbjct: 129 GDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLAS 188
Query: 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE 149
V A Q GD+R I Y + G H++ L+D YAKCG I A +LF +
Sbjct: 189 VISACSQLGDLRFGPWIESYMRRLGIE-MDGHLATALLDLYAKCGSIDKAYELFH--GLR 245
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
+K+LV++T++I G ++G +A++ F+ M + PN +TF+ +L A +H GLVEEG +
Sbjct: 246 KKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYR 305
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
F M ++ ++P + HYG ++D+ GRAGRL++A ++ +P + + VW LL AC
Sbjct: 306 CFTSM-KKYNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQ-PHAGVWGALLLACRL 363
Query: 270 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
H NVE GE + E+E G L+ NI A R+ D +RLR+V E+ K PG S
Sbjct: 364 HNNVEFGEIAAQHCFELEPDTTGYRSLLSNIYASGERWDDVKRLRKVTKEKGFSKIPGCS 423
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 123/247 (49%), Gaps = 17/247 (6%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
K G++E AR +F+EM RNVVSW ++ GY + A +LF++M E + +
Sbjct: 34 KLGDMEIARKMFDEMAERNVVSWNSMLAGYLKAGDMEKASSLFQQM-----PERNFASWN 88
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
A+ + GD+ + + ++ ++ +S Y+KCG + SA +LF+ +
Sbjct: 89 AMISGHVEFGDIDSARSFFDAMPQKNNVSWMTMISG-----YSKCGDVDSACELFDQVG- 142
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQK--VVLKPNRVTFLSVLNACSHGGLVEE 206
K+L+ + ++I+ +A + EA+ F M V ++P+ +T SV++ACS G +
Sbjct: 143 -GKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRF 201
Query: 207 GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
G + + + + D L+D+ + G +++A ++ G+ + ++V + ++
Sbjct: 202 G-PWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKK--DLVAYTAMILG 258
Query: 267 CSFHGNV 273
C +G
Sbjct: 259 CGINGKA 265
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 64/117 (54%), Gaps = 8/117 (6%)
Query: 106 IHGYGEKRGFN--AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 163
IHG +K GF+ I+V L+D Y K G + A K+F++++ +N+VSW S+++G+
Sbjct: 6 IHGQVQKFGFSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMA--ERNVVSWNSMLAGY 63
Query: 164 AMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEV 220
G ++A F++M + N ++ ++++ G ++ FFD M ++ V
Sbjct: 64 LKAGDMEKASSLFQQMP----ERNFASWNAMISGHVEFGDIDSARSFFDAMPQKNNV 116
>gi|242042081|ref|XP_002468435.1| hypothetical protein SORBIDRAFT_01g045890 [Sorghum bicolor]
gi|241922289|gb|EER95433.1| hypothetical protein SORBIDRAFT_01g045890 [Sorghum bicolor]
Length = 506
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 121/332 (36%), Positives = 196/332 (59%), Gaps = 16/332 (4%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ D ++FDE+P R++V+++ ++T +K +L+ AR +F++MP R+VVSWT +I Y R
Sbjct: 173 VDDAHRVFDEMPVRDVVSFSGLLTAHLKNNQLDSARMVFDQMPHRDVVSWTAMISAYARA 232
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+R ALALF M +P E+T+++V A GD+ + + Y + GF + +
Sbjct: 233 SRPQDALALFDAMP----VQPDEVTMVSVVSACTALGDLATGERLRLYVDSNGFG-WMVS 287
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-- 179
+ N L+D YAKCGC+ A +LF+ +++ ++L SW ++I +A HG + + F +M
Sbjct: 288 LRNALMDMYAKCGCLPEARELFDGMAI--RSLASWNTLILAYASHGDEESTIALFHQMLA 345
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV--EECEVLPDIKHYGCLIDMLGRA 237
+KP+ VT L+VL +H G VEEG FD M + +V ++HYGC++D+L RA
Sbjct: 346 HDNSVKPDGVTLLAVLTMYAHKGCVEEGRTVFDAMQRGDYGKVELTVEHYGCMVDLLSRA 405
Query: 238 GRLEQAEKVAS--GIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV 295
G LE+A K+ IPS N VVW LLGAC HGN++M E+ +K+ + GG Y+
Sbjct: 406 GHLEEAYKMIEQMSIPS---NDVVWGVLLGACRMHGNIDMAEKAVQKLRILNPHEGGYYI 462
Query: 296 LMYNILAGVWRYGDAERLRRVVDERNALKFPG 327
L+ ++ R +A +RR +++ A K G
Sbjct: 463 LLIDMYTAAGRTAEAMEVRRTMNKTRAKKTTG 494
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 101/236 (42%), Gaps = 49/236 (20%)
Query: 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISV-----------------------------E 149
H+HV N L+ YA + A ++F+++ V
Sbjct: 156 HVHVHNALLHAYASRSAVDDAHRVFDEMPVRDVVSFSGLLTAHLKNNQLDSARMVFDQMP 215
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
+++VSWT++IS +A ++A+ F+ M ++P+ VT +SV++AC+ G + G
Sbjct: 216 HRDVVSWTAMISAYARASRPQDALALFDAMP---VQPDEVTMVSVVSACTALGDLATG-- 270
Query: 210 FFDKMVEECEVLPDIKHYG-------CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
E + D +G L+DM + G L +A ++ G+ I ++ W T
Sbjct: 271 ------ERLRLYVDSNGFGWMVSLRNALMDMYAKCGCLPEARELFDGM--AIRSLASWNT 322
Query: 263 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVD 318
L+ A + HG+ E + ++L + D V + +L G E R V D
Sbjct: 323 LILAYASHGDEESTIALFHQMLAHDNSVKPDGVTLLAVLTMYAHKGCVEEGRTVFD 378
>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
Length = 719
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 195/330 (59%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+K KLF +P++ V+W+ +I G K G+++ A LF++MP +NVVSWT ++DG++R
Sbjct: 266 MKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRN 325
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
S AL++F +M+ E P+ TI++ A + G + IH Y + G +
Sbjct: 326 GDSEKALSMFSKMLE-EGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEA- 383
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ L+D YAKCG I SA ++F + E+K++ +WT +I G+A+HG ++A+ F++M
Sbjct: 384 LGTALVDMYAKCGNIESASEVFGE--TEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMF 441
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KP+ V FL++L AC H G V+ GL FFD M + + P +KHY ++DMLGR+G+L+
Sbjct: 442 AGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLK 501
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + +P + V+W L AC H +M + K+L++E + G+Y+ + N
Sbjct: 502 EALRFIERMPMN-PDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAY 560
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + ++ DAER+R ++ R K G S +
Sbjct: 561 AALGQWEDAERVRVLMQNRGVHKNSGWSCI 590
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 76/321 (23%), Positives = 143/321 (44%), Gaps = 40/321 (12%)
Query: 15 RNLVTWNVMITGLVKWGEL----EYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALAL 70
NL + +++ T L+ L ++ ++F +N+ ++ +I G T + A+
Sbjct: 107 HNLSSSSLITTQLISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNSHFFNAIFH 166
Query: 71 FRRMVACEYTEPSEITILAVFPAI-----WQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
FR M+ +P +T V ++ + G +C ++ E F V
Sbjct: 167 FRLMLR-SGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSF------VRVS 219
Query: 126 LIDTYAKCGCIFSALKLFEDISVER----KNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
L+D Y K + SA K+F++ S ER + + W +I G G K+AV+ F+ M K
Sbjct: 220 LVDMYVKVEKLGSAFKVFDE-SPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPK 278
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
K N V++ ++++ + G ++ ++ FD+M E+ ++ + ++D R G E
Sbjct: 279 ---KEN-VSWSTLIDGFAKNGDMDRAMELFDQMPEK-----NVVSWTTMVDGFSRNGDSE 329
Query: 242 QAEKVASGIPSE--ITNVVVWRTLLGACSFHGNVEMGERVTRKI----LEMERGYGGDYV 295
+A + S + E N + L AC+ G +E G R+ + I L + G V
Sbjct: 330 KALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALV 389
Query: 296 LMY----NILAGVWRYGDAER 312
MY NI + +G+ E+
Sbjct: 390 DMYAKCGNIESASEVFGETEQ 410
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 77/172 (44%), Gaps = 10/172 (5%)
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
KNL ++ ++I G + A+ +F M + +KP+R+T+ VL + + E G+
Sbjct: 142 KNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMA- 200
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI---TNVVVWRTLLGAC 267
M+ C + D L+DM + +L A KV P ++ ++W L+ C
Sbjct: 201 IHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGC 260
Query: 268 SFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319
G+++ ++ + + + E V ++ G + GD +R + D+
Sbjct: 261 CKAGSMKKAVKLFKAMPKKEN------VSWSTLIDGFAKNGDMDRAMELFDQ 306
>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
Length = 598
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 115/323 (35%), Positives = 190/323 (58%), Gaps = 5/323 (1%)
Query: 9 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGAL 68
F E NL+ N ++ VK +L+ AR +F+ + R++VSWT +I G + R + AL
Sbjct: 243 FRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEAL 302
Query: 69 ALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLID 128
+F M +P ++ + V A G + + + +H Y E++G + +HV ++D
Sbjct: 303 EVFNAM-QISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIE-WDVHVGTSVVD 360
Query: 129 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR 188
Y KCGC+ +A+ +F+++ + KN+ SW ++I+GFA+HG G+EA++ F+RM L PN
Sbjct: 361 MYVKCGCLDTAVSIFQEMPL--KNVSSWNALINGFALHGRGREALDCFDRMVASGLHPNE 418
Query: 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
VTF++VL AC H GLV+EG + F+ M + ++ P HYGC++D+LGRAG +++A V
Sbjct: 419 VTFITVLGACCHSGLVQEGRQLFELMTKSYKLSPWEDHYGCMVDLLGRAGLIQEAYDVIK 478
Query: 249 GIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
+P V W TLL AC HG ++ +++ I E+E G YVL+ N+ A R+
Sbjct: 479 AMPMR-PGVFTWVTLLSACQAHGRMDFSQQILMHIHELESSGNGIYVLLSNMYAVSDRWA 537
Query: 309 DAERLRRVVDERNALKFPGRSLV 331
D + R ++E+ K PG S++
Sbjct: 538 DVGKARGFMNEKGMQKEPGSSVI 560
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 128/251 (50%), Gaps = 10/251 (3%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++T G+ AR +F+EM R+VVSWT ++ +TR AL + M
Sbjct: 157 NALVTFYGACGQCGDARKVFDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEM----DV 212
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P+E+T+ +V A G R + +HG+ +R ++ V N L+D Y KC + A
Sbjct: 213 TPNEVTLASVLVACGNLGTARAGKAVHGWYFRRE-KELNLIVGNALLDMYVKCEKLDLAR 271
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
++F+ + +++VSWT +ISG EA+E F MQ +KP++V +VL+AC+
Sbjct: 272 RVFDMLLA--RDIVSWTVMISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACAS 329
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
G +E G ++ + +E + D+ ++DM + G L+ A + +P + NV W
Sbjct: 330 LGALESG-RWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMP--LKNVSSW 386
Query: 261 RTLLGACSFHG 271
L+ + HG
Sbjct: 387 NALINGFALHG 397
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 107/256 (41%), Gaps = 47/256 (18%)
Query: 79 YTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFS 138
YT P+ + A G +R H EK GF + V N L+ Y CG
Sbjct: 118 YTLPAALKACARL-----GGGLREGCQAHAVAEKAGFLG-RVPVQNALVTFYGACGQCGD 171
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198
A K+F++++ +++VSWT+++S F GM EA+ M + PN VT SVL AC
Sbjct: 172 ARKVFDEMA--ERDVVSWTALLSAFTRGGMFMEALGVLAEMD---VTPNEVTLASVLVAC 226
Query: 199 SHGGLVEEGLK----FFDK--------------MVEECEVLP------------DIKHYG 228
+ G G +F + M +CE L DI +
Sbjct: 227 GNLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWT 286
Query: 229 CLIDMLGRAGRLEQAEKV--ASGIPSEITNVVVWRTLLGACSFHGNVEMG----ERVTRK 282
+I L + R +A +V A I + VV T+L AC+ G +E G E + RK
Sbjct: 287 VMISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERK 346
Query: 283 ILEMERGYGGDYVLMY 298
+E + G V MY
Sbjct: 347 GIEWDVHVGTSVVDMY 362
>gi|242059435|ref|XP_002458863.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
gi|241930838|gb|EES03983.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
Length = 544
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 119/330 (36%), Positives = 187/330 (56%), Gaps = 10/330 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++ ++FD +P RN W+ M+TG K G E A+++F +P RN+V+W +I GY ++
Sbjct: 202 MEAAREVFDRMPARNAFVWSSMVTGYFKAGNAEEAQAVFHRIPTRNLVNWNALIAGYAQI 261
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
S AL F M+ E +P E T+ ++ A Q G + + +H + + H
Sbjct: 262 GCSEKALEAFDSMLQ-ERVKPDEFTMASLLSACAQLGSLEQGKKVHDFINREHIRKNHF- 319
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LID YAKCG + A +F+ + KN W ++IS A HG EA+ F +M+
Sbjct: 320 VLNGLIDMYAKCGDLVYARYIFD--GMRWKNTECWNTMISALASHGRSDEALHLFFQMEH 377
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
PN +T L+VL AC+HGG V+EGL+ F+K+ + V ++HYGCL+D+LGRAG+L+
Sbjct: 378 SGQTPNTITVLAVLGACTHGGFVDEGLRIFNKL-DAYGVEAGVEHYGCLVDLLGRAGKLK 436
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG----GDYVLM 297
+A ++ +P E N V+W +LLGAC HG+ EM VT +I + + +Y+++
Sbjct: 437 EAYEIVKNMPEE-PNEVIWGSLLGACRVHGDAEMSRLVTDEIHRLHSVHASSNDAEYIML 495
Query: 298 YNILAGVWRYGDAERLRRVVDERNALKFPG 327
NI+A R+ AE++RR + K P
Sbjct: 496 SNIMAASKRWEQAEQIRRKMARHGVEKTPA 525
>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Glycine max]
Length = 986
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 120/319 (37%), Positives = 189/319 (59%), Gaps = 6/319 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYTRMNRSNGALALFRR 73
+L N +I K E AR +F+ + R+VV+WT +I GY + +N AL LF
Sbjct: 542 DLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSG 601
Query: 74 MVACEYT-EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK 132
M + + +P++ T+ A + +R + +H Y + + + + V+NCLID Y+K
Sbjct: 602 MFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSK 661
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
G + +A +F+++ ++N VSWTS+++G+ MHG G++A+ F+ M+KV L P+ +TFL
Sbjct: 662 SGDVDTAQIVFDNM--PQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFL 719
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
VL ACSH G+V+ G+ FF++M ++ V P +HY C++D+ GRAGRL +A K+ + +P
Sbjct: 720 VVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPM 779
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312
E T VVW LL AC H NVE+GE ++LE+E G G Y L+ NI A R+ D R
Sbjct: 780 EPTP-VVWVALLSACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVAR 838
Query: 313 LRRVVDERNALKFPGRSLV 331
+R + K PG S +
Sbjct: 839 IRYTMKRTGIKKRPGCSWI 857
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 152/300 (50%), Gaps = 19/300 (6%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRN----VVSWTGIIDG 57
+++ +K+F + +++V+WN M+TG + G LE+A SLFE M N VV+WT +I G
Sbjct: 415 MEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITG 474
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN- 116
Y + + AL +FR+M C + P+ +T++++ A G + + + H Y K N
Sbjct: 475 YAQRGQGCEALDVFRQMCDCG-SRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNL 533
Query: 117 ------AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 170
A + V N LID YAKC A K+F+ +S + +++V+WT +I G+A HG
Sbjct: 534 DGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDAN 593
Query: 171 EAVENFERMQKV--VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG 228
A++ F M K+ +KPN T L AC+ + G + ++ +
Sbjct: 594 NALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVAN 653
Query: 229 CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
CLIDM ++G ++ A+ V +P N V W +L+ HG GE R EM +
Sbjct: 654 CLIDMYSKSGDVDTAQIVFDNMPQR--NAVSWTSLMTGYGMHGR---GEDALRVFDEMRK 708
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 144/317 (45%), Gaps = 44/317 (13%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCR---NVVSWTGIIDGYTRMNRSNGALALFR 72
N+ N +++ K G L +A ++F+++ R ++VSW ++ Y + +N ALALF
Sbjct: 293 NVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFH 352
Query: 73 RMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK 132
+M P I+++ + PA + +HG+ + G + V N ++D YAK
Sbjct: 353 KMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGL-VDDVFVGNAVVDMYAK 411
Query: 133 CG------CIFS-------------------------ALKLFEDISVERKNL--VSWTSI 159
CG +F AL LFE ++ E L V+WT++
Sbjct: 412 CGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAV 471
Query: 160 ISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEG-------LKFFD 212
I+G+A G G EA++ F +M +PN VT +S+L+AC G + G +KF
Sbjct: 472 ITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFIL 531
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
+ D+K LIDM + E A K+ + + +VV W ++G + HG+
Sbjct: 532 NLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGD 591
Query: 273 VEMGERVTRKILEMERG 289
++ + +M++
Sbjct: 592 ANNALQLFSGMFKMDKS 608
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 123/273 (45%), Gaps = 13/273 (4%)
Query: 23 MITGLVKWGELEYARSLFEEMPCR--NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
+I + YA L E +P +V W +I + L+R+M + +T
Sbjct: 197 LIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWT 256
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P T VF A + +H + GF A ++ V N ++ Y KCG + A
Sbjct: 257 -PDHYTFPFVFKACANLSSLSLGASLHATVSRSGF-ASNVFVCNAVVSMYGKCGALRHAH 314
Query: 141 KLFEDISVER-KNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFLSVLNAC 198
+F+D+ ++LVSW S++S + A+ F +M + ++ P+ ++ +++L AC
Sbjct: 315 NMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPAC 374
Query: 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
+ G + + ++ D+ ++DM + G++E+A KV + + +VV
Sbjct: 375 ASLAASLRGRQVHGFSIRS-GLVDDVFVGNAVVDMYAKCGKMEEANKVFQRM--KFKDVV 431
Query: 259 VWRTLLGACSFHGNVEMG----ERVTRKILEME 287
W ++ S G +E ER+T + +E++
Sbjct: 432 SWNAMVTGYSQAGRLEHALSLFERMTEENIELD 464
>gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]
Length = 489
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 193/331 (58%), Gaps = 6/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+K +FD + ++N VTWN MI G ++ G+++ A +F++MP R+++SWT +I+G+ +
Sbjct: 114 VKKARLVFDYMEDKNSVTWNTMIDGYMRNGQVDNAVKMFDKMPERDLISWTAMINGFVKK 173
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
ALA FR M +P + I+A A G + +H Y + F ++
Sbjct: 174 GFHEEALAWFREM-QISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKN-NVK 231
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VSN LID Y +CGC+ A ++F+ + E++ +VSW S+I GFA +G E++ F +MQ+
Sbjct: 232 VSNSLIDLYCRCGCVEFAREVFDKM--EKRTVVSWNSVIVGFAANGNAHESLVYFRKMQE 289
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KP+ VTF L ACSH GLVEEGL++F M + + P I+HYGCL+D+ RAGRLE
Sbjct: 290 EGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLE 349
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHG-NVEMGERVTRKILEMERGYGGDYVLMYNI 300
+A KV +P + N VV +LL AC HG N + ER+ + + ++ +YV++ N+
Sbjct: 350 EALKVVQSMPMK-PNEVVIGSLLAACRTHGNNTVLAERLMKHLSDVNVKGHSNYVILSNM 408
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ A ++RR + K PG S +
Sbjct: 409 YAADGKWEGASQMRRKMKGLGLKKQPGFSSI 439
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 130/305 (42%), Gaps = 41/305 (13%)
Query: 40 FEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAI--WQN 97
+ +VSWT I TR R A F M EP+ IT +A+ + +
Sbjct: 17 LNQSTSETIVSWTSRITLLTRNGRLAEAAKEFSDMRLAG-VEPNHITFIALLSGCGDFSS 75
Query: 98 GDVRNCQLIHGYGEKRGFNAFHIHVS-------------------------------NCL 126
G L+HGY K G + H+ V N +
Sbjct: 76 GSEALGDLLHGYACKLGHDRTHVMVGTAILGMYSKHSRVKKARLVFDYMEDKNSVTWNTM 135
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y + G + +A+K+F+ + ++L+SWT++I+GF G +EA+ F MQ +KP
Sbjct: 136 IDGYMRNGQVDNAVKMFDKMP--ERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKP 193
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ V ++ LNAC++ G + GL + + V + ++K LID+ R G +E A +V
Sbjct: 194 DYVAIIAALNACTNLGALSFGL-WVHRYVMSQDFKNNVKVSNSLIDLYCRCGCVEFAREV 252
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ E VV W +++ + +GN RK+ E G+ D V L
Sbjct: 253 FDKM--EKRTVVSWNSVIVGFAANGNAHESLVYFRKM--QEEGFKPDAVTFTGALTACSH 308
Query: 307 YGDAE 311
G E
Sbjct: 309 VGLVE 313
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 114/309 (36%), Positives = 185/309 (59%), Gaps = 6/309 (1%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
+I VK G L+ AR LF+E+P +N V W +I GY ++ N + L R M +P
Sbjct: 249 LINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREM-HLSNLKP 307
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
T+ V A Q G +H + EK+G + + + LID YAKCG I +A K+
Sbjct: 308 DRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGI--WDVFIGTALIDMYAKCGFIGAARKV 365
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202
F+ ++ +N+ +W +I+SG+A HG + A+E F M++ +P+ +TFL+VL+AC+H G
Sbjct: 366 FDQMN--ERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSG 423
Query: 203 LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
LVE G ++FD M++ ++ P ++HYGC++D+LGRAG L++A ++ + E NVVVW
Sbjct: 424 LVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVE-PNVVVWGA 482
Query: 263 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNA 322
LL ACS HGN+E+GE ++++ GG YV++ N+ A R+ + +R ++ E+
Sbjct: 483 LLSACSIHGNIEIGEWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMMVEKGI 542
Query: 323 LKFPGRSLV 331
K G S++
Sbjct: 543 CKSHGCSMI 551
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 118/244 (48%), Gaps = 6/244 (2%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
GE+ A+ +F+E ++VV W +I GY R + +F+ MV + P+E T++ +
Sbjct: 154 GEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGL 213
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A ++ +++ + IHGY K + + LI+ Y KCG + A KLF++I
Sbjct: 214 IVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDEIP--E 271
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
KN V W S+I G+ G E +E M LKP+R T VL+AC+ G G +
Sbjct: 272 KNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMGAFNLG-NW 330
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
+ E+ + + D+ LIDM + G + A KV + NV W +L + H
Sbjct: 331 VHRFAEK-KGIWDVFIGTALIDMYAKCGFIGAARKVFDQMNER--NVATWNAILSGYASH 387
Query: 271 GNVE 274
G E
Sbjct: 388 GQAE 391
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 120/248 (48%), Gaps = 7/248 (2%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
+I + L+YA +F + + + +I Y+ A++++ +M AC+
Sbjct: 44 IINSFLSHACLDYATQVFNQTQEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILG 103
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
+ T VF A V + +HG + G+ + + L++ Y CG I +A ++
Sbjct: 104 DKYTYPFVFKACASQFAVEKGKEVHGVIVRIGYE-LDGFLQSSLLNFYMVCGEIGNAQQV 162
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFLSVLNACSHG 201
F++ + K++V W ++I+G+A GM ++ F+ M +V ++PN T + ++ AC
Sbjct: 163 FDEF--DAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIES 220
Query: 202 GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWR 261
++ G M+++ + +K LI++ + G L+ A K+ IP + N VVW
Sbjct: 221 KNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDEIPEK--NTVVWN 278
Query: 262 TLL-GACS 268
+L+ G C
Sbjct: 279 SLICGYCQ 286
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 33/167 (19%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
F+ K+FD++ ERN+ TWN +++G G+ E A LF EM
Sbjct: 358 FIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEM----------------- 400
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
R +GA P IT LAV A +G V N + + +
Sbjct: 401 --RESGA-------------RPDSITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPRV 445
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 167
C++D + G + A +L + + VE N+V W +++S ++HG
Sbjct: 446 EHYGCMVDLLGRAGLLQEARELIKMMVVE-PNVVVWGALLSACSIHG 491
>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 118/315 (37%), Positives = 188/315 (59%), Gaps = 7/315 (2%)
Query: 19 TWNVMITGLVKWGELEYARSLFEEMPCR--NVVSWTGIIDGYTRMNRSNGALALFRRMVA 76
+ N +I V + LE AR +F+ MP R N VSW +I Y + NR + A ALF RM
Sbjct: 131 SLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRM-R 189
Query: 77 CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136
E + ++ A G + + IHGY EK G ++ +ID Y KCGC+
Sbjct: 190 LENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIE-LDSKLATTVIDMYCKCGCL 248
Query: 137 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLN 196
A ++F ++ +K + SW +I G AMHG G+ A+E F+ M++ ++ P+ +TF++VL+
Sbjct: 249 EKASEVFNELP--QKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLS 306
Query: 197 ACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256
AC+H GLVEEG +F M E + P ++H+GC++D+LGRAG LE+A K+ + +P +
Sbjct: 307 ACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVN-PD 365
Query: 257 VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRV 316
V L+GAC HGN E+GE++ +K++E+E G YVL+ N+ A R+ D ++R++
Sbjct: 366 AGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKL 425
Query: 317 VDERNALKFPGRSLV 331
+++R K PG S++
Sbjct: 426 MNDRGVKKAPGFSMI 440
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 42/152 (27%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ S++F+ELP++ + +WN MI GL G+ E A LF+EM
Sbjct: 248 LEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEME----------------- 290
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY-----GEKRGFN 116
R MVA P IT + V A +G V + Y G K G
Sbjct: 291 ----------REMVA-----PDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGME 335
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
F C++D + G + A KL ++ V
Sbjct: 336 HF-----GCMVDLLGRAGLLEEARKLINEMPV 362
Score = 37.4 bits (85), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Query: 161 SGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEV 220
SG+ + + + + RM + PN+ T+ ++ AC +EEG K V +
Sbjct: 67 SGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEG-KQIHAHVLKFGF 125
Query: 221 LPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
D LI M LEQA +V +P N V W ++ A
Sbjct: 126 GADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAA 171
>gi|115479089|ref|NP_001063138.1| Os09g0407800 [Oryza sativa Japonica Group]
gi|51091508|dbj|BAD36246.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|51091564|dbj|BAD36301.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113631371|dbj|BAF25052.1| Os09g0407800 [Oryza sativa Japonica Group]
gi|215740507|dbj|BAG97163.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 612
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 119/331 (35%), Positives = 200/331 (60%), Gaps = 4/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+++ K+FD +PER++V+WN M+ G + G++E AR +F+ MP R++VSW I+ Y ++
Sbjct: 235 MENARKMFDAMPERDVVSWNSMLDGYAQAGDVEMARLVFDGMPKRSIVSWNVILALYAKL 294
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF-HI 120
L LF M+A T P+E T ++V A GD+ + +H ++R +
Sbjct: 295 RDWRECLGLFDVMIAEGNTVPNEKTFVSVLTACANLGDLEKGRWVHDLVQERWDRLVPDV 354
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+ L+ YAKCG + +A ++F S+ K++ SW S+I G+ +HG ++A+E F M+
Sbjct: 355 LLLTTLLTMYAKCGVMETAREIFN--SMGEKSVPSWNSMIIGYGLHGQSEKALELFLEME 412
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ +PN TF+ VL++C+HGGLV EG FD+MV + P +H+GC++D+LGRAG L
Sbjct: 413 RDGPRPNETTFICVLSSCAHGGLVLEGWWCFDRMVRFYSIEPKSEHFGCMMDLLGRAGLL 472
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
EQ+E + + +++ +W L+ A N+++GE V +K++EM G Y+L+ NI
Sbjct: 473 EQSENLIENLQGKVSE-ALWGILMSASQTQNNIKLGEFVGKKLIEMRPTEVGPYILLSNI 531
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ D E++R+V++E+ K G SLV
Sbjct: 532 YAAEGRWDDVEKVRKVMEEKGVEKDAGLSLV 562
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 143/284 (50%), Gaps = 19/284 (6%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+L ++P + VTWN ++ ++ G L AR LF+EMP R+VVS+ ++ GY G
Sbjct: 147 RLLADIPRPDAVTWNTLLRACLRLGLLPAARRLFDEMPERDVVSYNSMVAGYVAEGDLAG 206
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A LF M + +T ++ ++GD+ N + + +R ++ N +
Sbjct: 207 ARNLFDGMARRDV-----VTWNSMISGYSRHGDMENARKMFDAMPERDVVSW-----NSM 256
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLK 185
+D YA+ G + A +F+ + ++++VSW I++ +A +E + F+ M +
Sbjct: 257 LDGYAQAGDVEMARLVFD--GMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTV 314
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECE-VLPDIKHYGCLIDMLGRAGRLEQAE 244
PN TF+SVL AC++ G +E+G D + E + ++PD+ L+ M + G +E A
Sbjct: 315 PNEKTFVSVLTACANLGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAR 374
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
++ + + + +V W +++ HG E+ LEMER
Sbjct: 375 EIFNSMGEK--SVPSWNSMIIGYGLHGQ---SEKALELFLEMER 413
>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
Length = 657
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 197/332 (59%), Gaps = 9/332 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDG 57
L G ++ L R + ++T LV ++G ++YA +F MP RNVVSW+ +I
Sbjct: 198 LTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIAC 257
Query: 58 YTRMNRSNGALALFRRMVA-CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN 116
Y + ++ AL FR M+ + + P+ +T+++V A + +LIHGY +RG +
Sbjct: 258 YAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLD 317
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
+ + V + L+ Y +CG + ++F+ + +++VSW S+IS + +HG G++A++ F
Sbjct: 318 SI-LPVISALVTMYGRCGKLDVGQRVFD--RMHDRDVVSWNSLISSYGVHGYGRKAIQIF 374
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
E M P VTF+SVL ACSH GLVEEG + F+ M + + P ++HY C++D+LGR
Sbjct: 375 EEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGR 434
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
A RL++A K+ + +E VW +LLG+C HGNVE+ ER +R++ +E G+YVL
Sbjct: 435 ANRLDEAAKMVQDMRTE-PGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVL 493
Query: 297 MYNILAGVWRYGDAERLRRVVDERNALKFPGR 328
+ +I A + + +R++++++ R K PGR
Sbjct: 494 LADIYAEAQMWDEVKRVKKLLEHRGLQKLPGR 525
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 15/248 (6%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM--VACEYTEPSEITIL 88
G ++YAR +F++ R + W + T L L+ +M + E + +L
Sbjct: 126 GSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVL 185
Query: 89 AVFPAIWQNGD-VRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS 147
A D + + IH + +RG+N+ H+++ L+D YA+ GC+ A +F +
Sbjct: 186 KACVASECTADHLTKGKEIHAHLTRRGYNS-HVYIMTTLVDMYARFGCVDYASYVFNGMP 244
Query: 148 VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV--LKPNRVTFLSVLNACSHGGLVE 205
V +N+VSW+++I+ +A +G EA+ F M PN VT +SVL AC+ +E
Sbjct: 245 V--RNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALE 302
Query: 206 EGLKFFDKMVEEC--EVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTL 263
+G ++ +LP I L+ M GR G+L+ ++V + +VV W +L
Sbjct: 303 QGRLIHGYILRRGLDSILPVI---SALVTMYGRCGKLDVGQRVFDRMHDR--DVVSWNSL 357
Query: 264 LGACSFHG 271
+ + HG
Sbjct: 358 ISSYGVHG 365
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 81/187 (43%), Gaps = 19/187 (10%)
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
LI Y+ G + A K+F+ ++ + W ++ + G G+E + + +M ++ ++
Sbjct: 118 LIGMYSDLGSVDYARKVFD--KTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVE 175
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG---------CLIDMLGR 236
+R T+ VL AC D + + E+ + G L+DM R
Sbjct: 176 SDRFTYTYVLKACVASECTA------DHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYAR 229
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
G ++ A V +G+P + NVV W ++ + +G R R+++ + + V
Sbjct: 230 FGCVDYASYVFNGMP--VRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVT 287
Query: 297 MYNILAG 303
M ++L
Sbjct: 288 MVSVLQA 294
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 119/319 (37%), Positives = 194/319 (60%), Gaps = 6/319 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL N +I K+GE+E A LF+ + ++V+SW +I GYT MN AL LF+ M+
Sbjct: 256 NLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEML 315
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR--GFNAFHIHVSNCLIDTYAKC 133
T P+++T+L++ PA G + + IH Y K+ G + LID YAKC
Sbjct: 316 RSGET-PNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKC 374
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G I +A ++F D S+ ++L +W ++ISGFAMHG A + F RM+ ++P+ +TF+
Sbjct: 375 GDIDAAQQVF-DSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVG 433
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L+ACSH G+++ G F M E+ P ++HYGC+ID+LG +G ++AE++ + +P E
Sbjct: 434 LLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPME 493
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
+ V+W +LL AC HGN+E+GE +K++++E G G YVL+ NI A R+ + ++
Sbjct: 494 -PDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKI 552
Query: 314 RRVVDERN-ALKFPGRSLV 331
R +++++ K PG S +
Sbjct: 553 RALLNDKGMKKKVPGCSSI 571
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 148/274 (54%), Gaps = 10/274 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+D K+FD R++V++ +I G V G +E A+ LF+E+P ++VVSW +I GY
Sbjct: 140 LEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVET 199
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL LF+ M+ P E T++ V A Q+ + + +H + GF A ++
Sbjct: 200 GNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGF-ASNLK 258
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N LID Y+K G + +A +LF+ + K+++SW ++I G+ + KEA+ F+ M +
Sbjct: 259 IVNALIDLYSKFGEVETACELFD--GLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 316
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECE-VLPDIKHY-GCLIDMLGRAGR 239
PN VT LS+L AC+H G ++ G + ++ + V+ ++ LIDM + G
Sbjct: 317 SGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGD 376
Query: 240 LEQAEKVASGIPSEITN--VVVWRTLLGACSFHG 271
++ A++V S ++N + W ++ + HG
Sbjct: 377 IDAAQQV---FDSSMSNRSLSTWNAMISGFAMHG 407
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 123/262 (46%), Gaps = 37/262 (14%)
Query: 35 YARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAI 94
YA S+F+ + N++ W + G+ + AL L+ M++ P T + +
Sbjct: 41 YAISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLL-PDSYTFPFLLKSC 99
Query: 95 WQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER---- 150
++ + Q IHG+ K GF+ I+V LI YA+ G + A K+F DIS R
Sbjct: 100 AKSKIRKEGQQIHGHVLKLGFD-LDIYVHTSLISMYAQNGRLEDARKVF-DISSHRDVVS 157
Query: 151 --------------------------KNLVSWTSIISGFAMHGMGKEAVENFERMQKVV- 183
K++VSW ++ISG+ G KEA+E F+ M +
Sbjct: 158 YTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTN 217
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
++P+ T ++V++AC+ +E G + + + ++K LID+ + G +E A
Sbjct: 218 VRPDESTMVTVVSACAQSDSIELG-RHVHSWINDHGFASNLKIVNALIDLYSKFGEVETA 276
Query: 244 EKVASGIPSEITNVVVWRTLLG 265
++ G+ ++ +V+ W TL+G
Sbjct: 277 CELFDGLWNK--DVISWNTLIG 296
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 5/145 (3%)
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198
A+ +F+ +++ NL+ W ++ G A+ A++ + M + L P+ TF +L +C
Sbjct: 42 AISVFD--TIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSC 99
Query: 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
+ + +EG + +++ L DI + LI M + GRLE A KV S +VV
Sbjct: 100 AKSKIRKEGQQIHGHVLKLGFDL-DIYVHTSLISMYAQNGRLEDARKVFD--ISSHRDVV 156
Query: 259 VWRTLLGACSFHGNVEMGERVTRKI 283
+ L+ G +E +++ +I
Sbjct: 157 SYTALIAGYVSRGYIESAQKLFDEI 181
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 122/319 (38%), Positives = 193/319 (60%), Gaps = 9/319 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL N +I K GELE A LFE +P ++V+SW +I GYT MN AL LF+ M+
Sbjct: 257 NLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEML 316
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR---GFNAFHIHVSNCLIDTYAK 132
T P+++T+L++ PA G + + IH Y +KR NA + S LID YAK
Sbjct: 317 RSGET-PNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTS--LIDMYAK 373
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
CG I +A ++F S+ K+L SW ++I GFAMHG + + F RM+K ++P+ +TF+
Sbjct: 374 CGDIEAAHQVFN--SILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFV 431
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
+L+ACSH G+++ G F M ++ ++ P ++HYGC+ID+LG +G ++AE++ + +
Sbjct: 432 GLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEM 491
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312
E + V+W +LL AC HGNVE+GE + ++++E G YVL+ NI A R+ +
Sbjct: 492 E-PDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVAN 550
Query: 313 LRRVVDERNALKFPGRSLV 331
R +++++ K PG S +
Sbjct: 551 TRALLNDKGMKKVPGCSSI 569
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 150/276 (54%), Gaps = 11/276 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+D K+FDE P R++V++ +I G G +E A+ +F+E+P ++VVSW +I GY
Sbjct: 142 LEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAET 201
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL LF+ M+ P E T++ V A Q+G + + +H + + GF + ++
Sbjct: 202 GNYKEALELFKDMMKTN-VRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGS-NLK 259
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N LID Y+KCG + +A LFE + K+++SW ++I G+ + KEA+ F+ M +
Sbjct: 260 IVNALIDLYSKCGELETACGLFEGLPY--KDVISWNTLIGGYTHMNLYKEALLLFQEMLR 317
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEG---LKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
PN VT LS+L AC+H G ++ G + DK ++ ++ LIDM + G
Sbjct: 318 SGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLR--TSLIDMYAKCG 375
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
+E A +V + I + ++ W ++ + HG +
Sbjct: 376 DIEAAHQVFNSILHK--SLSSWNAMIFGFAMHGRAD 409
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 7/146 (4%)
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198
A+ +FE +++ NL+ W ++ G A+ A++ + M + L PN TF +L +C
Sbjct: 44 AISVFE--TIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSC 101
Query: 199 SHGGLVEEGLKFFDKMVE-ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNV 257
+ +EG + +++ C++ D+ + LI M + GRLE A KV P +V
Sbjct: 102 AKSKAFKEGQQIHGHVLKLGCDL--DLYVHTSLISMYVQNGRLEDAHKVFDESPHR--DV 157
Query: 258 VVWRTLLGACSFHGNVEMGERVTRKI 283
V + L+ + G +E +++ +I
Sbjct: 158 VSYTALIKGYASRGYIENAQKMFDEI 183
>gi|125605648|gb|EAZ44684.1| hypothetical protein OsJ_29310 [Oryza sativa Japonica Group]
Length = 612
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 119/331 (35%), Positives = 200/331 (60%), Gaps = 4/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+++ K+FD +PER++V+WN M+ G + G++E AR +F+ MP R++VSW I+ Y ++
Sbjct: 235 MENARKMFDAMPERDVVSWNSMLDGYAQAGDVEMARLVFDGMPKRSIVSWNVILALYAKL 294
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF-HI 120
L LF M+A T P+E T ++V A GD+ + +H ++R +
Sbjct: 295 RDWRECLGLFDVMIAEGNTVPNEKTFVSVLTACANLGDLEKGRWVHDLVQERWDRLVPDV 354
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+ L+ YAKCG + +A ++F S+ K++ SW S+I G+ +HG ++A+E F M+
Sbjct: 355 LLLTTLLTMYAKCGVMETAREIFN--SMGEKSVPSWNSMIIGYGLHGQSEKALELFLEME 412
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ +PN TF+ VL++C+HGGLV EG FD+MV + P +H+GC++D+LGRAG L
Sbjct: 413 RDGPRPNETTFICVLSSCAHGGLVLEGWWCFDRMVRFYSIEPKSEHFGCMMDLLGRAGLL 472
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
EQ+E + + +++ +W L+ A N+++GE V +K++EM G Y+L+ NI
Sbjct: 473 EQSENLIENLQGKVSE-ALWGILMSASQTQNNIKLGEFVGKKLIEMRPTEVGPYILLSNI 531
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ D E++R+V++E+ K G SLV
Sbjct: 532 YAAEGRWDDVEKVRKVMEEKGVEKDAGLSLV 562
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 143/284 (50%), Gaps = 19/284 (6%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+L ++P + VTWN ++ ++ G L AR LF+EMP R+VVS+ ++ GY G
Sbjct: 147 RLLADIPRPDAVTWNTLLRACLRLGLLPAARRLFDEMPERDVVSYNSMVAGYVAEGDLAG 206
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A LF M + +T ++ ++GD+ N + + +R ++ N +
Sbjct: 207 ARNLFDGMARRDV-----VTWNSMISGYSRHGDMENARKMFDAMPERDVVSW-----NSM 256
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLK 185
+D YA+ G + A +F+ + ++++VSW I++ +A +E + F+ M +
Sbjct: 257 LDGYAQAGDVEMARLVFD--GMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTV 314
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECE-VLPDIKHYGCLIDMLGRAGRLEQAE 244
PN TF+SVL AC++ G +E+G D + E + ++PD+ L+ M + G +E A
Sbjct: 315 PNEKTFVSVLTACANLGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAR 374
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
++ + + + +V W +++ HG E+ LEMER
Sbjct: 375 EIFNSMGEK--SVPSWNSMIIGYGLHGQ---SEKALELFLEMER 413
>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 184/317 (58%), Gaps = 12/317 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ +FD +P RN V+WN MI G +K G+ A+ LF++MP R++V+W +I GY R
Sbjct: 227 LEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERN 286
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ AL LF M+ E P+ TIL A + + +H Y K GF +
Sbjct: 287 KQFTKALKLFEVMLR-EDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGV- 344
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LI+ Y+KCG + SAL++F S+ +K L WTS+I G MHG+ ++ +E F+ M +
Sbjct: 345 LGTLLIEMYSKCGSVKSALRVFR--SIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCR 402
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
LKP+ +TF+ VLNACSH G E+ ++F M + + P I+HYGCLID+L RAG LE
Sbjct: 403 TGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLE 462
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A+ +P + N V+W +LL HGN+ MGE + ++++ G YV++ N+
Sbjct: 463 EAKDTIERMPIK-ANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNMY 521
Query: 302 --AGVWRYGDAERLRRV 316
AG+W E++R+V
Sbjct: 522 AAAGLW-----EKVRQV 533
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 126/270 (46%), Gaps = 50/270 (18%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FD + ++++V+WN +I G + GE+E A +FEEMP ++ SWT +IDG ++ +
Sbjct: 170 KVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEKDSFSWTILIDGLSKSGKLEA 229
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS-NC 125
A +F RM +RN VS N
Sbjct: 230 ARDVFDRM------------------------PIRNS------------------VSWNA 247
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
+I+ Y K G +A +LF+ + ++LV+W S+I+G+ + +A++ FE M + +
Sbjct: 248 MINGYMKAGDSNTAKELFDQMP--ERSLVTWNSMITGYERNKQFTKALKLFEVMLREDIS 305
Query: 186 PNRVTFLSVLNACSHGGLVEEGL-KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
PN T L ++A S G+V G ++ + + D LI+M + G ++ A
Sbjct: 306 PNYTTILGAVSAAS--GMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSAL 363
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVE 274
+V IP + + W +++ HG VE
Sbjct: 364 RVFRSIPKK--KLGHWTSVIVGLGMHGLVE 391
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 118/232 (50%), Gaps = 16/232 (6%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
L+YA SLF+ + +VSW +I Y RSN A+ALF +++ C++ P T+ V
Sbjct: 65 LQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLL-CDFV-PDSFTLPCVLK 122
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
+ G ++ + IHG K GF +S+ L+ Y+KCG I K+F+ +E K+
Sbjct: 123 GCARLGALQEGKQIHGLVLKIGFGVDKFVLSS-LVSMYSKCGEIELCRKVFD--RMEDKD 179
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
+VSW S+I G+A G + A+E FE M + + ++ +++ S G +E FD
Sbjct: 180 VVSWNSLIDGYARCGEIELALEMFEEMP----EKDSFSWTILIDGLSKSGKLEAARDVFD 235
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
+M V + +I+ +AG A+++ +P ++V W +++
Sbjct: 236 RMPIRNSV-----SWNAMINGYMKAGDSNTAKELFDQMPER--SLVTWNSMI 280
>gi|357118743|ref|XP_003561109.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Brachypodium distachyon]
Length = 535
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 115/349 (32%), Positives = 198/349 (56%), Gaps = 21/349 (6%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L + ++FDE+P R+ +N +++ + G ++ A LF EM RNVVSWT ++ GY +
Sbjct: 139 LLDEARRVFDEMPRRDTAVYNALLSAYARCGLVDAAEKLFGEMTERNVVSWTAMVSGYAQ 198
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
R A+ F M +P+E+T+ +V PA G + + Y +G + ++
Sbjct: 199 NGRHEAAVETFLEMWEGAGVQPNELTVSSVLPACAAVGAMELGTKVEEYARGKG-HLGNV 257
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V+N L++ YAKCG I A ++F+ I R++L SW ++I FA+HG+ EA+ F +++
Sbjct: 258 FVTNALLEMYAKCGSIQRAWQVFQGIG-HRRDLCSWNTMIMAFAVHGLWMEALALFHKLR 316
Query: 181 KVV------------------LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP 222
+ +KP+ +TF+ V+ AC+HGGLV+EG F+ M + + P
Sbjct: 317 VRISCSNSLVYFFSIPTHMTGVKPDGITFVGVILACTHGGLVDEGKLIFNSMEADFSINP 376
Query: 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRK 282
I+HYGC++D+LGRAG L++A + +P+E + V+W LLGACSFHGN+E+ E K
Sbjct: 377 RIEHYGCMVDLLGRAGLLKEAYSMIISMPAE-PDAVIWGALLGACSFHGNIELAETAVDK 435
Query: 283 ILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
++ +E + V++ NI A ++ ++ +++ E++ K G S +
Sbjct: 436 LMYLEPQNTANLVILSNIYASSGKWDGVAQVWKLLKEKDHKKSAGYSFI 484
>gi|326522825|dbj|BAJ88458.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 551
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 190/311 (61%), Gaps = 7/311 (2%)
Query: 22 VMITGLVKWGELEYARSLFEEMPCRN-VVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
+I + G+ AR++F +P + VVS+ +I R +R AL LFR M A +
Sbjct: 163 TLINMYAECGDARSARAMFGRVPNGDCVVSYNAMITAAVRSSRPGEALVLFREMQA-KGL 221
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+P+ +T+ +V A G + + IH Y K G ++ + V+ LID Y KCG + A+
Sbjct: 222 KPTSVTVTSVLSACALLGALELGRWIHEYVRKAGLDSL-VKVNTALIDMYGKCGSLEDAI 280
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
+F+ + E ++ +W+ +I +A H G+EA+ FE M+K ++P+ VTFL VL ACSH
Sbjct: 281 DVFQGM--ESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIRPDAVTFLGVLYACSH 338
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
G+V EGL++FD M E ++P IKHYGC+ D+L R+G+LE+A K +P + T ++W
Sbjct: 339 SGMVSEGLQYFDSM-REYGIVPGIKHYGCVTDLLARSGQLEKAYKFIDELPIQPT-AILW 396
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320
RTLL AC HG V++G+RV +ILE++ +G DYV+ N+ A ++ + R+R++++E+
Sbjct: 397 RTLLSACGSHGAVDLGKRVFERILELDDTHGSDYVIFSNLCANTGKWEEMNRVRKLMNEK 456
Query: 321 NALKFPGRSLV 331
+K PG S +
Sbjct: 457 GVVKVPGCSSI 467
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 112/244 (45%), Gaps = 12/244 (4%)
Query: 31 GELEYARSLFEEMPCRNVVSW-TGIIDGYTRMNRSNGALALFR---RMVACEYTEPSEIT 86
L YAR +F+ +P V W ++ GY R S+GA R RM+ E P T
Sbjct: 69 AHLAYARQVFDRIPTPGDVVWYNTLLRGYAR--SSDGAAEAARVLARMLE-EGVAPDTYT 125
Query: 87 ILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI 146
+++ A + HG K G A H +V LI+ YA+CG SA +F +
Sbjct: 126 FVSLLKACAAARAGEEGRQAHGVAVKTG-AADHEYVLPTLINMYAECGDARSARAMFGRV 184
Query: 147 SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEE 206
+VS+ ++I+ EA+ F MQ LKP VT SVL+AC+ G +E
Sbjct: 185 P-NGDCVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKPTSVTVTSVLSACALLGALEL 243
Query: 207 GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
G ++ + V + + +K LIDM G+ G LE A V G+ S + W ++ A
Sbjct: 244 G-RWIHEYVRKAGLDSLVKVNTALIDMYGKCGSLEDAIDVFQGMESR--DRQAWSVMIVA 300
Query: 267 CSFH 270
+ H
Sbjct: 301 YANH 304
>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Vitis vinifera]
Length = 852
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 122/322 (37%), Positives = 194/322 (60%), Gaps = 6/322 (1%)
Query: 13 PERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYTRMNRSNGALAL 70
P +L+ N +I K + AR++F+ +P R+VV+WT +I G + +N AL L
Sbjct: 405 PGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALEL 464
Query: 71 FRRMVACE-YTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDT 129
F +M+ + + P+ TI A + G +R + IH Y + F + + V+NCLID
Sbjct: 465 FSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDM 524
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
Y+K G + +A +F+++ ++N VSWTS+++G+ MHG G+EA++ F MQKV L P+ V
Sbjct: 525 YSKSGDVDAARVVFDNM--HQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGV 582
Query: 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
TF+ VL ACSH G+V++G+ +F+ M ++ V+P +HY C++D+L RAGRL++A ++ G
Sbjct: 583 TFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRG 642
Query: 250 IPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGD 309
+P + T VW LL AC + NVE+GE ++LE+E G G Y L+ NI A + D
Sbjct: 643 MPMKPTP-AVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKD 701
Query: 310 AERLRRVVDERNALKFPGRSLV 331
R+R ++ K PG S V
Sbjct: 702 VARIRYLMKNTGIKKRPGCSWV 723
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 147/299 (49%), Gaps = 18/299 (6%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR----NVVSWTGIIDG 57
+++ +K+F+ + +++V+WN M+TG + G + A LFE++ NVV+W+ +I G
Sbjct: 282 MEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAG 341
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN- 116
Y + AL +FR+M C +EP+ +T++++ G + + + H + K N
Sbjct: 342 YAQRGLGFEALDVFRQMRLCG-SEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNL 400
Query: 117 -----AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKE 171
+ V N LID Y+KC +A +F+ I + +++V+WT +I G A HG E
Sbjct: 401 DENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANE 460
Query: 172 AVENFERMQKV--VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC 229
A+E F +M + + PN T L AC+ G + G + ++ + C
Sbjct: 461 ALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANC 520
Query: 230 LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
LIDM ++G ++ A V + N V W +L+ HG GE + EM++
Sbjct: 521 LIDMYSKSGDVDAARVVFDNMHQR--NGVSWTSLMTGYGMHGR---GEEALQIFYEMQK 574
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 148/343 (43%), Gaps = 57/343 (16%)
Query: 20 WNVMI-TGLV----KWGELEYARSLFEEMPCRNV---VSWTGIIDGYTRMNRSNGALALF 71
WNV + GLV + G E AR +F+EM R V VSW I+ Y + S A+ +F
Sbjct: 159 WNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMF 218
Query: 72 RRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYA 131
RM P ++++ V PA G + +HGY + G + V N ++D YA
Sbjct: 219 ERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFE-DVFVGNAVVDMYA 277
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTS--------------------------------- 158
KCG + A K+FE + V K++VSW +
Sbjct: 278 KCGMMEEANKVFERMKV--KDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTW 335
Query: 159 --IISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV- 215
+I+G+A G+G EA++ F +M+ +PN VT +S+L+ C+ G + G + +
Sbjct: 336 SAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIK 395
Query: 216 -----EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
+E + D+ LIDM + + A + IP + +VV W L+G + H
Sbjct: 396 WILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQH 455
Query: 271 GNVEMGERVTRKILE-----MERGYGGDYVLMYNILAGVWRYG 308
G + ++L+ M + LM G R+G
Sbjct: 456 GEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFG 498
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 111/243 (45%), Gaps = 9/243 (3%)
Query: 46 RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQL 105
V W +I + L L+RRM + P T V A + R
Sbjct: 89 HTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGW-RPDHYTFPFVLKACGEIPSFRCGAS 147
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK--NLVSWTSIISGF 163
+H GF +++ V N L+ Y +CG +A ++F+++ ER +LVSW SI++ +
Sbjct: 148 VHAVVFASGFE-WNVFVGNGLVSMYGRCGAWENARQVFDEMR-ERGVGDLVSWNSIVAAY 205
Query: 164 AMHGMGKEAVENFERM-QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP 222
G A++ FERM + + ++P+ V+ ++VL AC+ G G + + +
Sbjct: 206 MQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS-GLFE 264
Query: 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRK 282
D+ ++DM + G +E+A KV + ++ +VV W ++ S G + + K
Sbjct: 265 DVFVGNAVVDMYAKCGMMEEANKVFERM--KVKDVVSWNAMVTGYSQIGRFDDALGLFEK 322
Query: 283 ILE 285
I E
Sbjct: 323 IRE 325
>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 624
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 119/331 (35%), Positives = 195/331 (58%), Gaps = 3/331 (0%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
+ + ++FD +++L +WN+MI G V GE+ A+ +F+EM R+VVSWT II GY +
Sbjct: 167 LVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQ 226
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+ AL LF M+ P+E T+ + A + + IH Y +K +
Sbjct: 227 VGCFKEALDLFHEMLQTG-PPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIK-MNE 284
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+ L+D YAKCG I A K+F D + + W ++I G+AMHG KEA++ FE+M+
Sbjct: 285 RLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMK 344
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ PN+VTF+++LNACSHG LVEEG +F M + P+I+HYGC++D+LGR+G L
Sbjct: 345 VEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLL 404
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
++AE+ +P + +W LLGAC H ++E G+R+ + I E++ + G +VL+ N+
Sbjct: 405 KEAEETVFNMPMA-PDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANL 463
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ ++ +A+ +R+ ++ K PG S +
Sbjct: 464 YSASGQWDEAKAVRQKIEVSGRKKTPGCSSI 494
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 129/287 (44%), Gaps = 34/287 (11%)
Query: 18 VTWNVMITGLV--KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM-NRSNGALALFRRM 74
+T N ++ L+ +G L YA LF+++P +V + +I + + S+ ++ +F M
Sbjct: 48 ITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSM 107
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
V P+ T + VF A V + I + K G + ++ V+N +I YA G
Sbjct: 108 VRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLES-NLFVTNAMIRMYANWG 166
Query: 135 CIFSALKLF-----EDI------------------------SVERKNLVSWTSIISGFAM 165
+ A ++F +D+ + +++VSWT+II+G+
Sbjct: 167 LVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQ 226
Query: 166 HGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIK 225
G KEA++ F M + PN T S L AC++ +++G ++ +++ E+ + +
Sbjct: 227 VGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQG-RWIHVYIDKSEIKMNER 285
Query: 226 HYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
L+DM + G ++ A KV V W ++G + HG
Sbjct: 286 LLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGK 332
>gi|347954494|gb|AEP33747.1| chloroplast biogenesis 19, partial [Brassica oleracea]
Length = 485
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 121/325 (37%), Positives = 195/325 (60%), Gaps = 6/325 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FD + ++N VTWN MI G ++ G ++ A +F+EMP R+++SWT +I+G+ + A
Sbjct: 120 VFDRVEDKNSVTWNTMIDGYMRSGRVDDAAKVFDEMPERDLISWTAMINGFVKKGLHEEA 179
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
LA FR M +P + ++A A G + +H + + F ++ VSN LI
Sbjct: 180 LAWFREM-QVSGVKPDYVAVIAALAACANLGALSFGLWVHRFVVSQDFKN-NVRVSNSLI 237
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y +CGC+ A ++F+++ E++ +VSW S+I GFA +G E++ F RMQ+ KP+
Sbjct: 238 DLYCRCGCVEFARQVFDEM--EKRTVVSWNSVIVGFAANGHAHESLVYFRRMQEERFKPD 295
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
VTF L ACSH GLVEEG+++F+ M + + P I+HYGCL+D+ RAGRLE+A KV
Sbjct: 296 AVTFTGALTACSHVGLVEEGVRYFEAMKRDYRISPRIEHYGCLVDLYSRAGRLEEALKVV 355
Query: 248 SGIPSEITNVVVWRTLLGACSFHGN-VEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P + VV+ +LL AC HGN E+ ER+ +++ E++ +YV++ N+ A +
Sbjct: 356 ESMPMKPNEVVIG-SLLAACRTHGNDTELAERMMKRLSELKVKGHSNYVILSNMYAADGQ 414
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ A ++RR + K PG S +
Sbjct: 415 WEGASKMRRKMKGLGLKKQPGFSSI 439
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 115/262 (43%), Gaps = 47/262 (17%)
Query: 47 NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQ-- 104
VSWT I +R R A F M EP+ IT++A+ +C+
Sbjct: 28 TTVSWTSRITLLSRNGRLAEAAKEFTAMRLAG-VEPNHITLIALLSG------CADCEPF 80
Query: 105 --LIHGYGEKRGFNAFHIHVS-------------------------------NCLIDTYA 131
+HGY K G + + V N +ID Y
Sbjct: 81 GDSLHGYACKLGLDRNQVMVGTAILGMYSKRRRFRKARLVFDRVEDKNSVTWNTMIDGYM 140
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191
+ G + A K+F+++ ++L+SWT++I+GF G+ +EA+ F MQ +KP+ V
Sbjct: 141 RSGRVDDAAKVFDEMP--ERDLISWTAMINGFVKKGLHEEALAWFREMQVSGVKPDYVAV 198
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
++ L AC++ G + GL + + V + +++ LID+ R G +E A +V +
Sbjct: 199 IAALAACANLGALSFGL-WVHRFVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDEM- 256
Query: 252 SEITNVVVWRTLLGACSFHGNV 273
E VV W +++ + +G+
Sbjct: 257 -EKRTVVSWNSVIVGFAANGHA 277
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 34/149 (22%)
Query: 154 VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDK 213
VSWTS I+ + +G EA + F M+ ++PN +T +++L+ C+
Sbjct: 30 VSWTSRITLLSRNGRLAEAAKEFTAMRLAGVEPNHITLIALLSGCA-------------- 75
Query: 214 MVEECEVLPDIKH-YGC--------------LIDMLGRAGRLEQAEKVASGIPSEITNVV 258
+CE D H Y C ++ M + R +A V + E N V
Sbjct: 76 ---DCEPFGDSLHGYACKLGLDRNQVMVGTAILGMYSKRRRFRKARLVFDRV--EDKNSV 130
Query: 259 VWRTLLGACSFHGNVEMGERVTRKILEME 287
W T++ G V+ +V ++ E +
Sbjct: 131 TWNTMIDGYMRSGRVDDAAKVFDEMPERD 159
>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
Length = 496
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 116/291 (39%), Positives = 177/291 (60%), Gaps = 5/291 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + +LFDE+PERNLV+ N M+ G VK G +E A LF EMPCR+VVSW ++ Y +
Sbjct: 112 IDEAKRLFDEMPERNLVSXNSMLXGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQC 171
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ N ALALF +M A +PSE T++++ A G + +H Y I
Sbjct: 172 GKPNEALALFDQMXAVG-VKPSEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSI- 229
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V L+D YAKCG I A ++F ++E K++++W +II+G A+ G KEA + F+ M++
Sbjct: 230 VGTALVDMYAKCGKISLATQVFN--AMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKE 287
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++PN +TF+++L+ACSH G+V+EG K D M + P ++HYGC+ID+L RAG LE
Sbjct: 288 AGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLE 347
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG 292
+A ++ +P E N LLG C HGN E+GE V ++++ ++ G
Sbjct: 348 EAMELIGTMPME-PNPCALGALLGGCRIHGNFELGEMVGKRLINLQPCQSG 397
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 144/288 (50%), Gaps = 54/288 (18%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L +LF+ +R+LV+WN MI G VK GE+ +AR +F+ M CR+V+SW +I+GY +
Sbjct: 50 LGAAKQLFNLCSDRDLVSWNAMIDGYVKRGEMGHARMVFDRMVCRDVISWNTMINGYAIV 109
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ + A LF M P RN +
Sbjct: 110 GKIDEAKRLFDEM-------PE-----------------RN-----------------LV 128
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
N ++ + KCG + A LF ++ +++VSW S+++ +A G EA+ F++M
Sbjct: 129 SXNSMLXGFVKCGNVEDAFGLFSEMPC--RDVVSWNSMLACYAQCGKPNEALALFDQMXA 186
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFF----DKMVEECEVLPDIKHYGCLIDMLGRA 237
V +KP+ T +S+L+AC+H G +++GL D +E ++ L+DM +
Sbjct: 187 VGVKPSEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGT-----ALVDMYAKC 241
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
G++ A +V + + S+ +V+ W T++ + G+V+ +++ +++ E
Sbjct: 242 GKISLATQVFNAMESK--DVLAWNTIIAGMAILGHVKEAQQLFKEMKE 287
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 182/329 (55%), Gaps = 13/329 (3%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LF+ +P RN+ +WN MITG + G + AR LF+ MP R+ VSW II GY +
Sbjct: 315 ELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEE 374
Query: 67 ALALFRRMVACEYTEPSEITILAVFP-AIWQNGDVRNCQL---IHGYGEKRGFNAFHIHV 122
AL +F E E + + F A+ D+ +L +HG K GF V
Sbjct: 375 ALNMF-----VEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFET-GCFV 428
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
N L+ Y KCG A +FE I E K++VSW ++I+G+A HG G++A+ FE M+K
Sbjct: 429 GNALLGMYFKCGSTDEANDVFEGI--EEKDVVSWNTMIAGYARHGFGRQALVLFESMKKA 486
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
+KP+ +T + VL+ACSH GL++ G ++F M + V P KHY C+ID+LGRAGRLE+
Sbjct: 487 GVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEE 546
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302
AE + +P + W LLGA HGN E+GE+ + +ME G YVL+ N+ A
Sbjct: 547 AENLMRNMPFD-PGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYA 605
Query: 303 GVWRYGDAERLRRVVDERNALKFPGRSLV 331
R+ D ++R + E K G S V
Sbjct: 606 ASGRWVDVGKMRSKMREAGVQKVTGYSWV 634
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 134/275 (48%), Gaps = 25/275 (9%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D +LFD +P R++++WN MI+G + G+L A+ LF E P R+V +WT ++ GY +
Sbjct: 217 LGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQN 276
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ A F M +EI+ A+ G V+ +++ +I
Sbjct: 277 GMVDEARKYFDEMPV-----KNEISYNAMLA-----GYVQYKKMVIAGELFEAMPCRNIS 326
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
N +I Y + G I A KLF+ + +++ VSW +IISG+A +G +EA+ F M++
Sbjct: 327 SWNTMITGYGQNGGIAQARKLFD--MMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKR 384
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC-----LIDMLGR 236
NR TF L+ C+ +E G + ++V+ GC L+ M +
Sbjct: 385 DGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAG------FETGCFVGNALLGMYFK 438
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
G ++A V GI E +VV W T++ + HG
Sbjct: 439 CGSTDEANDVFEGI--EEKDVVSWNTMIAGYARHG 471
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 137/295 (46%), Gaps = 48/295 (16%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFD++PER+L +WNVM+TG V+ L A LF+ MP ++VVSW ++ GY + + A
Sbjct: 99 LFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEA 158
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
+F +M + I+ + A NG ++ + + + + + NCL+
Sbjct: 159 REVFNKM-----PHRNSISWNGLLAAYVHNGRLKEARRLF-----ESQSNWELISWNCLM 208
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
Y K + A +LF+ + V ++++SW ++ISG+A G +A F P
Sbjct: 209 GGYVKRNMLGDARQLFDRMPV--RDVISWNTMISGYAQVGDLSQAKRLFNE------SPI 260
Query: 188 R--VTFLSVLNACSHGGLVEEGLKFFDKMV------------------------EECEVL 221
R T+ ++++ G+V+E K+FD+M E E +
Sbjct: 261 RDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAM 320
Query: 222 P--DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
P +I + +I G+ G + QA K+ +P + V W ++ + +G+ E
Sbjct: 321 PCRNISSWNTMITGYGQNGGIAQARKLFDMMPQR--DCVSWAAIISGYAQNGHYE 373
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 118/269 (43%), Gaps = 54/269 (20%)
Query: 11 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALAL 70
+ + ++VTWN I+ ++ G + A +F MP R+ VS+ +I GY R + + A L
Sbjct: 40 KFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDL 99
Query: 71 FRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTY 130
F +M E + + W N ++ Y
Sbjct: 100 FDKM--------PERDLFS-----W----------------------------NVMLTGY 118
Query: 131 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVT 190
+ + A KLF+ + +K++VSW +++SG+A +G EA E F +M N ++
Sbjct: 119 VRNRRLGEAHKLFD--LMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMP----HRNSIS 172
Query: 191 FLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI 250
+ +L A H G ++E + F E + ++ + CL+ + L A ++ +
Sbjct: 173 WNGLLAAYVHNGRLKEARRLF-----ESQSNWELISWNCLMGGYVKRNMLGDARQLFDRM 227
Query: 251 PSEITNVVVWRTLLGACSFHGNVEMGERV 279
P + +V+ W T++ + G++ +R+
Sbjct: 228 P--VRDVISWNTMISGYAQVGDLSQAKRL 254
>gi|15225365|ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546766|sp|Q1PEU4.2|PP201_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g44880
gi|2344896|gb|AAC31836.1| hypothetical protein [Arabidopsis thaliana]
gi|330255385|gb|AEC10479.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 118/336 (35%), Positives = 199/336 (59%), Gaps = 11/336 (3%)
Query: 1 FLKDGS-----KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGII 55
F+K G +LFDE+ + ++TW MI G +++ AR LF+ MP RN+VSW +I
Sbjct: 186 FVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMI 245
Query: 56 DGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF 115
GY + + + LF+ M A +P ++TIL+V PAI G + + H + +++
Sbjct: 246 GGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKL 305
Query: 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
+ + V ++D Y+KCG I A ++F+++ K + SW ++I G+A++G + A++
Sbjct: 306 DK-KVKVCTAILDMYSKCGEIEKAKRIFDEMP--EKQVASWNAMIHGYALNGNARAALDL 362
Query: 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
F M + KP+ +T L+V+ AC+HGGLVEEG K+F M E + I+HYGC++D+LG
Sbjct: 363 FVTMM-IEEKPDEITMLAVITACNHGGLVEEGRKWFHVM-REMGLNAKIEHYGCMVDLLG 420
Query: 236 RAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV 295
RAG L++AE + + +P E N ++ + L AC + ++E ER+ +K +E+E G+YV
Sbjct: 421 RAGSLKEAEDLITNMPFE-PNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYV 479
Query: 296 LMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
L+ N+ A R+ D ++ V+ + A K G SL+
Sbjct: 480 LLRNLYAADKRWDDFGMVKNVMRKNQAKKEVGCSLI 515
>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
Length = 539
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 119/331 (35%), Positives = 195/331 (58%), Gaps = 3/331 (0%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
+ + ++FD +++L +WN+MI G V GE+ A+ +F+EM R+VVSWT II GY +
Sbjct: 82 LVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQ 141
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+ AL LF M+ P+E T+ + A + + IH Y +K +
Sbjct: 142 VGCFKEALDLFHEMLQTG-PPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIK-MNE 199
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+ L+D YAKCG I A K+F D + + W ++I G+AMHG KEA++ FE+M+
Sbjct: 200 RLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMK 259
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ PN+VTF+++LNACSHG LVEEG +F M + P+I+HYGC++D+LGR+G L
Sbjct: 260 VEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLL 319
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
++AE+ +P + +W LLGAC H ++E G+R+ + I E++ + G +VL+ N+
Sbjct: 320 KEAEETVFNMPMA-PDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANL 378
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ ++ +A+ +R+ ++ K PG S +
Sbjct: 379 YSASGQWDEAKAVRQKIEVSGRKKTPGCSSI 409
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 104/238 (43%), Gaps = 31/238 (13%)
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
S+ ++ +F MV P+ T + VF A V + I + K G + ++ V+
Sbjct: 12 SHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLES-NLFVT 70
Query: 124 NCLIDTYAKCGCIFSALKLF-----EDI------------------------SVERKNLV 154
N +I YA G + A ++F +D+ + +++V
Sbjct: 71 NAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVV 130
Query: 155 SWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKM 214
SWT+II+G+ G KEA++ F M + PN T S L AC++ +++G ++
Sbjct: 131 SWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQG-RWIHVY 189
Query: 215 VEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
+++ E+ + + L+DM + G ++ A KV V W ++G + HG
Sbjct: 190 IDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGK 247
>gi|347954510|gb|AEP33755.1| chloroplast biogenesis 19, partial [Olimarabidopsis pumila]
Length = 475
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 189/331 (57%), Gaps = 6/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+K +FD + ++N VTWN MI G ++ G++ A LF++MP +++SWT +++G+ +
Sbjct: 100 VKKARLVFDYMDDKNSVTWNTMIDGYMRSGQVHNAVKLFDKMPEPDLISWTAMVNGFVKK 159
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL FR M +P + I+A A G + +H Y + F ++
Sbjct: 160 GFHEEALVWFREM-QISGVKPDYVAIIAALNACTNLGALSLGLWVHRYVMSQDFKN-NVR 217
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VSN LID Y +CGC+ A ++F+ + E++ +VSW S+I GFA +G E++ F +MQ+
Sbjct: 218 VSNSLIDLYCRCGCVEFAREVFDKM--EKRTVVSWNSVIVGFAANGNAHESLVYFRKMQE 275
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KPN VTF L ACSH GLV+EGL+FF M + + P I+HYGCL+D+ RAGRLE
Sbjct: 276 EGFKPNAVTFTGALTACSHVGLVDEGLRFFQSMKRDYNISPRIEHYGCLVDLYSRAGRLE 335
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHG-NVEMGERVTRKILEMERGYGGDYVLMYNI 300
A KV +P + N VV +LL AC HG N + ER+ + + ++ +YV++ N+
Sbjct: 336 DALKVVQSMPMK-PNEVVIGSLLAACRNHGNNTVLAERLMKHLSDLNVKSHSNYVILSNM 394
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ A R+RR + K PG S +
Sbjct: 395 YAADAKWEGASRMRRKMKGLGLKKQPGFSSI 425
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 120/271 (44%), Gaps = 39/271 (14%)
Query: 48 VVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAI--WQNGDVRNCQL 105
+VSWT I TR A F M EP+ IT +A+ + +G L
Sbjct: 11 IVSWTSRITLLTRSAXLAEAAKEFADMRLAG-VEPTHITFIALLSGCGDFPSGSETLGDL 69
Query: 106 IHGYGEKRGFNAFHIHVS-------------------------------NCLIDTYAKCG 134
+HGY K G + H+ V N +ID Y + G
Sbjct: 70 LHGYACKLGLDRNHVMVGTAILGMYSKRGRVKKARLVFDYMDDKNSVTWNTMIDGYMRSG 129
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
+ +A+KLF+ + +L+SWT++++GF G +EA+ F MQ +KP+ V ++
Sbjct: 130 QVHNAVKLFDKMP--EPDLISWTAMVNGFVKKGFHEEALVWFREMQISGVKPDYVAIIAA 187
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
LNAC++ G + GL + + V + +++ LID+ R G +E A +V + E
Sbjct: 188 LNACTNLGALSLGL-WVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKM--EK 244
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
VV W +++ + +GN RK+ E
Sbjct: 245 RTVVSWNSVIVGFAANGNAHESLVYFRKMQE 275
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
+ +VSWTS I+ EA + F M+ ++P +TF+++L+ C G G +
Sbjct: 9 ETIVSWTSRITLLTRSAXLAEAAKEFADMRLAGVEPTHITFIALLSGC---GDFPSGSET 65
Query: 211 FDKMVE--ECEVLPDIKHY---GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
++ C++ D H ++ M + GR+++A V + + N V W T++
Sbjct: 66 LGDLLHGYACKLGLDRNHVMVGTAILGMYSKRGRVKKARLVFDYMDDK--NSVTWNTMID 123
Query: 266 ACSFHGNVEMGERVTRKILE 285
G V ++ K+ E
Sbjct: 124 GYMRSGQVHNAVKLFDKMPE 143
>gi|449527613|ref|XP_004170804.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like, partial [Cucumis sativus]
Length = 315
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 115/296 (38%), Positives = 178/296 (60%), Gaps = 4/296 (1%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW 95
AR LF+E+P ++VV+W +I GY + AL +F M P ++T+L++ A
Sbjct: 2 ARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLG-QRPDDVTMLSILSASA 60
Query: 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 155
GD+ + IH + +SN LID YAKCG I +AL++F+ + +K+ S
Sbjct: 61 DLGDLEIGKKIHRSIFDMCCGDLSVLLSNALIDMYAKCGSIGNALEVFQ--GMRKKDTSS 118
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215
W SII G A+HG +E++ F+ M ++ +KPN +TF++VL ACSH G V EG +F+ M
Sbjct: 119 WNSIIGGLALHGHAEESINLFQEMLRLKMKPNEITFVAVLVACSHAGKVREGRMYFNLMK 178
Query: 216 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEM 275
++ P+IKHYGC++D+LGRAG L +A + E N ++WRTLLGAC HG+VE+
Sbjct: 179 NVFKIEPNIKHYGCMVDILGRAGLLIEAFDFIDTMEIE-PNAIIWRTLLGACRVHGDVEL 237
Query: 276 GERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
G R ++L+M + GDYVL+ NI A + +++R+++D+ K G SL+
Sbjct: 238 GRRANEQLLKMRKDESGDYVLLSNIYASQGEWDGVQKVRKLMDDGGVKKKVGHSLI 293
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 13/168 (7%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I K G + A +F+ M ++ SW II G + ++ LF+ M+ +
Sbjct: 89 NALIDMYAKCGSIGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLRLK-M 147
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS----NCLIDTYAKCGCI 136
+P+EIT +AV A G VR ++ + N F I + C++D + G +
Sbjct: 148 KPNEITFVAVLVACSHAGKVREGRMYFNLMK----NVFKIEPNIKHYGCMVDILGRAGLL 203
Query: 137 FSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKEAVENFERMQK 181
A + + +E N + W +++ +HG +G+ A E +M+K
Sbjct: 204 IEAFDFIDTMEIE-PNAIIWRTLLGACRVHGDVELGRRANEQLLKMRK 250
>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana]
gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
DEFECTIVE 247; Flags: Precursor
gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis
thaliana gb|AC007109.6, and contains two DUF17 PF|01535
domains [Arabidopsis thaliana]
gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana]
gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]
Length = 500
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 121/331 (36%), Positives = 192/331 (58%), Gaps = 6/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
K +FD + ++N VTWN MI G ++ G+++ A +F++MP R+++SWT +I+G+ +
Sbjct: 125 FKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKK 184
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL FR M +P + I+A A G + +H Y + F ++
Sbjct: 185 GYQEEALLWFREM-QISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKN-NVR 242
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VSN LID Y +CGC+ A ++F ++ E++ +VSW S+I GFA +G E++ F +MQ+
Sbjct: 243 VSNSLIDLYCRCGCVEFARQVFYNM--EKRTVVSWNSVIVGFAANGNAHESLVYFRKMQE 300
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KP+ VTF L ACSH GLVEEGL++F M + + P I+HYGCL+D+ RAGRLE
Sbjct: 301 KGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLE 360
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHG-NVEMGERVTRKILEMERGYGGDYVLMYNI 300
A K+ +P + N VV +LL ACS HG N+ + ER+ + + ++ +YV++ N+
Sbjct: 361 DALKLVQSMPMK-PNEVVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNM 419
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ A ++RR + K PG S +
Sbjct: 420 YAADGKWEGASKMRRKMKGLGLKKQPGFSSI 450
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 129/297 (43%), Gaps = 41/297 (13%)
Query: 48 VVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAI--WQNGDVRNCQL 105
VSWT I+ TR R A F M EP+ IT +A+ + +G L
Sbjct: 36 TVSWTSRINLLTRNGRLAEAAKEFSDMTLAG-VEPNHITFIALLSGCGDFTSGSEALGDL 94
Query: 106 IHGYGEKRGFNAFHIHVS-------------------------------NCLIDTYAKCG 134
+HGY K G + H+ V N +ID Y + G
Sbjct: 95 LHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSG 154
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
+ +A K+F+ + ++L+SWT++I+GF G +EA+ F MQ +KP+ V ++
Sbjct: 155 QVDNAAKMFDKMP--ERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAA 212
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
LNAC++ G + GL + + V + +++ LID+ R G +E A +V + E
Sbjct: 213 LNACTNLGALSFGL-WVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNM--EK 269
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
VV W +++ + +GN RK+ E+G+ D V L G E
Sbjct: 270 RTVVSWNSVIVGFAANGNAHESLVYFRKM--QEKGFKPDAVTFTGALTACSHVGLVE 324
>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 602
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 115/301 (38%), Positives = 180/301 (59%), Gaps = 5/301 (1%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G L AR++F+ MP + V+W+ +I GY R S+ A+ LFR M A + E+T++ V
Sbjct: 178 GFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQA-NGVQADEVTVIGV 236
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A G + + + + E+ G + + N LIDT AKCG + A+ +FE +++
Sbjct: 237 LAAATDLGALELARWVRRFVEREGIGK-SVTLCNALIDTLAKCGDVDGAVAVFE--GMQQ 293
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
+++VSWTS+I AM G GKEAV FE M+ + P+ V F+ VL ACSH G+V+EG +
Sbjct: 294 RSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGY 353
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
FD M E + P I+HYGC++DM GRAG +E+A + +P + N V+WR+L+ AC H
Sbjct: 354 FDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQ-PNPVIWRSLVSACRAH 412
Query: 271 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSL 330
G +E+GE +TR +L + +Y+++ N+ A R+ + +RR + +R K PG S+
Sbjct: 413 GRLELGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSI 472
Query: 331 V 331
V
Sbjct: 473 V 473
>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
Length = 602
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 115/301 (38%), Positives = 180/301 (59%), Gaps = 5/301 (1%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G L AR++F+ MP + V+W+ +I GY R S+ A+ LFR M A + E+T++ V
Sbjct: 178 GFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQA-NGVQADEVTVIGV 236
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A G + + + + E+ G + + N LIDT AKCG + A+ +FE +++
Sbjct: 237 LAAATDLGALELARWVRRFVEREGIGK-SVTLCNALIDTLAKCGDVDGAVAVFE--GMQQ 293
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
+++VSWTS+I AM G GKEAV FE M+ + P+ V F+ VL ACSH G+V+EG +
Sbjct: 294 RSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGY 353
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
FD M E + P I+HYGC++DM GRAG +E+A + +P + N V+WR+L+ AC H
Sbjct: 354 FDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQ-PNPVIWRSLVSACRAH 412
Query: 271 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSL 330
G +E+GE +TR +L + +Y+++ N+ A R+ + +RR + +R K PG S+
Sbjct: 413 GRLELGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSI 472
Query: 331 V 331
V
Sbjct: 473 V 473
>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 111/318 (34%), Positives = 183/318 (57%), Gaps = 6/318 (1%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ N+ N ++ K G +E A S+F EMP ++++SW +I GY++ + N AL+LF
Sbjct: 131 QSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGD 190
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
MV +P T+ + PA + + +HG+ + GF + V+N L+D Y KC
Sbjct: 191 MVL--EMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQ-QVANALVDMYVKC 247
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G A LF+ I K+L++WT +I+G+ MHG G A+ F M++ ++P+ V+F+S
Sbjct: 248 GVPVLARLLFDMIPT--KDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFIS 305
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L ACSH GL++EG +FF+ M +EC V P ++HY C++D+L R+G+L A K +P E
Sbjct: 306 ILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIE 365
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
+ +W LL C H +V++ E+V + E+E G YVL+ N A ++ + ++L
Sbjct: 366 -PDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEEVKKL 424
Query: 314 RRVVDERNALKFPGRSLV 331
R+ + R K PG S +
Sbjct: 425 RQKIGRRGLKKNPGCSWI 442
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 122/251 (48%), Gaps = 8/251 (3%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ K G L+ A +F+ M R VV+WT +I Y R S+ A+ LF M E
Sbjct: 37 NTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDR-EGV 95
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P TI V A NG + N + +H Y + + +I V N L+D YAKCG + A
Sbjct: 96 SPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQS-NIFVCNALMDMYAKCGSMEDAN 154
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
+F ++ V K+++SW ++I G++ + + EA+ F M + +KP+ T +L AC+
Sbjct: 155 SVFLEMPV--KDIISWNTMIGGYSKNSLPNEALSLFGDMV-LEMKPDGTTLACILPACAS 211
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
++ G + ++ D + L+DM + G A + IP++ +++ W
Sbjct: 212 LASLDRGKEVHGHILRN-GFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTK--DLITW 268
Query: 261 RTLLGACSFHG 271
++ HG
Sbjct: 269 TVMIAGYGMHG 279
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 98/182 (53%), Gaps = 6/182 (3%)
Query: 87 ILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI 146
++++ A GDV + +HG G K + + N L+D YAKCG + A+ +F+ +
Sbjct: 1 MVSILQACANCGDVSLGRAVHGSGVKACVH-WKTTFCNTLLDMYAKCGVLDGAILVFDLM 59
Query: 147 SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEE 206
SV + +V+WTS+I+ +A G+ EA+ F M + + P+ T +VL+AC+ G +E
Sbjct: 60 SV--RTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLEN 117
Query: 207 GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
G K + E ++ +I L+DM + G +E A V +P + +++ W T++G
Sbjct: 118 G-KDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMP--VKDIISWNTMIGG 174
Query: 267 CS 268
S
Sbjct: 175 YS 176
>gi|357477567|ref|XP_003609069.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510124|gb|AES91266.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 611
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 121/332 (36%), Positives = 190/332 (57%), Gaps = 26/332 (7%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWG-------ELEYARSLFEEMPCRNVVSWTGIIDGYT 59
K+FDE+ + N+V WN ++T + G + +F EM R+ SW+ +I G+
Sbjct: 169 KVFDEMSQPNVVAWNAVVTACFRCGMWRVLGVSFGWREVVFCEMKMRDDASWSTMIVGFA 228
Query: 60 RMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
+ + A F+ ++ + PSE+++ V A Q G +++HG+ EK GF
Sbjct: 229 KSGSFHDAFGFFKELLR-DRNRPSEVSLTGVLSACAQAGAFEFGKILHGFMEKAGFLCI- 286
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+ V+N LIDTY+KCG + A KL +IS+ AMHG EA+ F M
Sbjct: 287 VSVNNALIDTYSKCGNVDMA-KLVFNISL---------------AMHGRADEAIRVFHEM 330
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
++ ++P+ VTF+S+L ACSH GLVE+G F KM + P I+HYGC++D+ GRA R
Sbjct: 331 EESGVRPDGVTFISLLYACSHSGLVEQGCALFSKMRNFYGIEPAIEHYGCMVDLYGRAAR 390
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
L++A + +P + NV++WRTLLGACS HGN+E+ E V ++ EM+ GD+VL+ N
Sbjct: 391 LQKAYEFIRQMPI-LPNVIIWRTLLGACSIHGNIELAELVKARLAEMDPNNSGDHVLLSN 449
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ A ++ D +RR + E++ K PG S++
Sbjct: 450 VYAVAGKWKDVAGIRRTMIEQSMKKIPGWSMI 481
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/342 (22%), Positives = 132/342 (38%), Gaps = 62/342 (18%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
L Y+ LF P + + +I + + +L F +++ P +
Sbjct: 61 LNYSLRLFHHFPNPDTFMYNTLIRSLSHSSTPLSSLQPFIQLLRHPTLLPDSFSFAFTLK 120
Query: 93 AIWQNG-DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS---- 147
I +G R +H + + GF+ HI V LI YA+CGC A K+F+++S
Sbjct: 121 GIANDGCSKRQGIQLHSHAFRHGFDD-HIFVGTTLISMYAECGCYEYARKVFDEMSQPNV 179
Query: 148 --------------------------------VERKNLVSWTSIISGFAMHGMGKEAVEN 175
++ ++ SW+++I GFA G +A
Sbjct: 180 VAWNAVVTACFRCGMWRVLGVSFGWREVVFCEMKMRDDASWSTMIVGFAKSGSFHDAFGF 239
Query: 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
F+ + + +P+ V+ VL+AC+ G E G K +E+ L + LID
Sbjct: 240 FKELLRDRNRPSEVSLTGVLSACAQAGAFEFG-KILHGFMEKAGFLCIVSVNNALIDTYS 298
Query: 236 RAGRLEQAEKV------ASGIPSEITNV-------------VVWRTLLGACSFHGNVEMG 276
+ G ++ A+ V G E V V + +LL ACS G VE G
Sbjct: 299 KCGNVDMAKLVFNISLAMHGRADEAIRVFHEMEESGVRPDGVTFISLLYACSHSGLVEQG 358
Query: 277 ERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVD 318
+ K+ R + G + + V YG A RL++ +
Sbjct: 359 CALFSKM----RNFYGIEPAIEHYGCMVDLYGRAARLQKAYE 396
>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
gi|194706828|gb|ACF87498.1| unknown [Zea mays]
Length = 570
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/325 (36%), Positives = 197/325 (60%), Gaps = 6/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+ F+ +P +++V+W M+ K G ++ AR F+ MP RN VSW +I Y + + +
Sbjct: 202 RCFEMMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHE 261
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL L+++M + P E T++ V A + GD+ +++H Y N I + N L
Sbjct: 262 ALDLYKQMQS-HGPAPDEATLVPVLSACGRIGDLTVGKMVHLYIRDNIHNP-DISLINSL 319
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+D YAKCG + +A++LF ++ +N+VSW II G AMHG +A+ F M + P
Sbjct: 320 LDMYAKCGQVDTAIRLFREMC--NRNVVSWNVIIGGLAMHGRALDAITFFRSMVRNT-SP 376
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +TF+++L++CSHGGL+E G +F+ M V +++HY C++D+LGR G LE+A +
Sbjct: 377 DGITFVALLSSCSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCL 436
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P + +VVVW LLGAC HGNV++G++V +++LE+E GG +VL+ N+L +
Sbjct: 437 IKEMPMK-PDVVVWGALLGACRIHGNVKIGKQVIKQLLELEGISGGLFVLISNLLYETNQ 495
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ D +RLR+++ ER K G S +
Sbjct: 496 WEDMKRLRKLMKERGTRKDMGVSSI 520
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 125/280 (44%), Gaps = 34/280 (12%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ G L +R F+EM RNVVSW +I GY + + A ALF M +
Sbjct: 84 NALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYAQAGDTREACALFGEMRRQGFL 143
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
E T+ ++ A Q G++ +L+H G + + + L+D Y+KCG + A
Sbjct: 144 -GDEFTLASLLLACSQEGNLEFGRLVHCLMLVSG-SPVDLILGGALVDMYSKCGDLCMAR 201
Query: 141 KLFEDISVE-----------------------------RKNLVSWTSIISGFAMHGMGKE 171
+ FE + ++ +N VSW ++IS + G E
Sbjct: 202 RCFEMMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHE 261
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLI 231
A++ +++MQ P+ T + VL+AC G + G K + + PDI L+
Sbjct: 262 ALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLTVG-KMVHLYIRDNIHNPDISLINSLL 320
Query: 232 DMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
DM + G+++ A ++ + + NVV W ++G + HG
Sbjct: 321 DMYAKCGQVDTAIRLFREMCNR--NVVSWNVIIGGLAMHG 358
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 108/226 (47%), Gaps = 7/226 (3%)
Query: 49 VSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHG 108
V + I Y + AL L R M+ P+E T+ V A + N +HG
Sbjct: 11 VMYNTITRAYCNSDCPREALRLHRCMLR-RGVLPNEFTLPFVVKACTRAQAWDNALAVHG 69
Query: 109 YGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 168
K GF + V+N L+ +YA G + + + F++++ +N+VSW S+I G+A G
Sbjct: 70 VALKLGFVG-QVFVANALLHSYASAGSLGDSRRFFDEMA--GRNVVSWNSMIGGYAQAGD 126
Query: 169 GKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG 228
+EA F M++ + T S+L ACS G +E G M+ + D+ G
Sbjct: 127 TREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPV-DLILGG 185
Query: 229 CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
L+DM + G L A + +P I +VV W ++L A + HG+V+
Sbjct: 186 ALVDMYSKCGDLCMARRCFEMMP--IKSVVSWTSMLCAQTKHGSVD 229
>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 541
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 116/333 (34%), Positives = 192/333 (57%), Gaps = 8/333 (2%)
Query: 3 KDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
K+ K+FDE+ R++V+WN M+ G ++ GE+E A +LF +M RN+++W II G +
Sbjct: 181 KNARKVFDEMFVRDVVSWNSMVVGYLRNGEVEMALNLFRKMNGRNIITWNSIITGLVQAG 240
Query: 63 RSNGALALFRRM---VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
+ +L +F M + +P +ITI +V A G + + + +H Y K
Sbjct: 241 HAKESLEIFHEMQFLSGDDVVKPDKITIASVLSACALLGSIDHGKWVHAYLRKNDIEC-D 299
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+ + L++ Y KCG + A+++F D+ K+ +WT++IS FA+HG GK+A + F M
Sbjct: 300 VVIGTALVNMYGKCGDVQQAIEIFNDMP--EKDASAWTAMISVFALHGFGKKAFDCFLEM 357
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+K +KPN VTF+ +L+ACSH GLVE+G FD M + P I HY C++D+L RA
Sbjct: 358 EKAGVKPNHVTFVGLLSACSHSGLVEQGRCCFDVMKRVYSIEPQIYHYACMVDILSRARL 417
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
++A + +P + +V VW LLG C HGN+++GE+V ++++E Y+ + +
Sbjct: 418 FDEALFLIRSMPMK-PDVYVWGALLGGCQMHGNIKLGEKVAHYLIDLEPHNHAFYINLCD 476
Query: 300 ILAGVWRYGDAERLRRVVDERN-ALKFPGRSLV 331
I +Y A+R+R + ER K PG S++
Sbjct: 477 IYVKAGKYDAAKRIRNSMKERGIETKIPGCSII 509
>gi|359497527|ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Vitis vinifera]
gi|296083555|emb|CBI23551.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 126/355 (35%), Positives = 191/355 (53%), Gaps = 37/355 (10%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
LF ++PERN +WN MI+G V++G+++ ARS F+ MP RN VSW +I GY++ +
Sbjct: 226 SLFQQMPERNFASWNAMISGYVEFGDIDSARSFFDAMPQRNNVSWMTMISGYSKCGDVDS 285
Query: 67 A-----------LALFRRMVACEY---------------------TEPSEITILAVFPAI 94
A L LF M+AC +P E+T+ +V A
Sbjct: 286 ACELFDQVGGKDLLLFNAMIACYAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISAC 345
Query: 95 WQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 154
Q GD+R I Y + G H++ L+D YAKCG I A +LF + +K+LV
Sbjct: 346 SQLGDLRFGPWIESYMRRLGIE-MDGHLATALLDLYAKCGSIDKAYELFH--GLRKKDLV 402
Query: 155 SWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKM 214
++T++I G ++G +A++ F+ M + PN +TF+ +L A +H GLVEEG F M
Sbjct: 403 AYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYHCFTSM 462
Query: 215 VEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
++ ++P + HYG ++D+ GRAGRL++A ++ +P + + VW LL AC H NVE
Sbjct: 463 -KKYNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQ-PHAGVWGALLLACRLHNNVE 520
Query: 275 MGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
GE + E+E G L+ NI A R+ D +RLR+V E+ K PG S
Sbjct: 521 FGEIAAQHCFELEPDTTGYCSLLSNIYASGERWDDVKRLRKVTKEKGFSKIPGCS 575
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 144/269 (53%), Gaps = 17/269 (6%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FDE+ ERN+V+WN M+ G +K G+L A+ +F+E+P ++V+SW +I GY R
Sbjct: 164 KMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEK 223
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL+LF++M E + + A+ + GD+ + + +R ++ +
Sbjct: 224 ALSLFQQM-----PERNFASWNAMISGYVEFGDIDSARSFFDAMPQRNNVSWMT-----M 273
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM--QKVVL 184
I Y+KCG + SA +LF+ + K+L+ + ++I+ +A + KEA++ F M V +
Sbjct: 274 ISGYSKCGDVDSACELFDQVG--GKDLLLFNAMIACYAQNSRPKEALKLFNNMLNPDVNV 331
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
+P+ +T SV++ACS G + G + + + + D L+D+ + G +++A
Sbjct: 332 QPDEMTLASVISACSQLGDLRFG-PWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAY 390
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNV 273
++ G+ + ++V + ++ C +G
Sbjct: 391 ELFHGLRKK--DLVAYTAMILGCGINGKA 417
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 118/275 (42%), Gaps = 25/275 (9%)
Query: 34 EYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPA 93
+Y S+ + SW I T+ + A AL+ +M P+ + + A
Sbjct: 56 QYVHSVLHHSKSPDSFSWACAIRFSTQHGQFKEAFALYVQMQRWGLW-PTTFALSSALKA 114
Query: 94 IWQNGDVRNCQLIHGYGEKRGFNA--FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151
+ IHG +K GF+ I+V L+D Y K G + A K+F++++ +
Sbjct: 115 CARIAYRMGGLSIHGQVQKFGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMA--ER 172
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
N+VSW S+++G+ G A F+ + QK V+ N S+++ + G +E+ L
Sbjct: 173 NVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWN-----SMISGYARAGDMEKALSL 227
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
F +M E + + +I G ++ A +P N V W T++ S
Sbjct: 228 FQQMPER-----NFASWNAMISGYVEFGDIDSARSFFDAMPQR--NNVSWMTMISGYSKC 280
Query: 271 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
G+V+ + ++ GG +L++N + +
Sbjct: 281 GDVDSACELFDQV-------GGKDLLLFNAMIACY 308
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 33/182 (18%)
Query: 155 SWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKM 214
SW I HG KEA + +MQ+ L P S L AC+ GL +
Sbjct: 72 SWACAIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIAYRMGGLSIHGQ- 130
Query: 215 VEECEVLPDIKHYG------------CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
++ +G L+D + G +E A K+ + NVV W +
Sbjct: 131 ---------VQKFGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAER--NVVSWNS 179
Query: 263 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER---LRRVVDE 319
+L G++ + +RV +I + D + ++++G R GD E+ L + + E
Sbjct: 180 MLAGYLKSGDLVVAQRVFDEIPQ------KDVISWNSMISGYARAGDMEKALSLFQQMPE 233
Query: 320 RN 321
RN
Sbjct: 234 RN 235
>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Glycine max]
Length = 579
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/297 (38%), Positives = 183/297 (61%), Gaps = 5/297 (1%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT-EPSEITILAVFPAI 94
A +F+EMP R+ V+W +I R NR+ AL+LF M Y EP ++T L + A
Sbjct: 158 ACKVFDEMPHRDTVAWNVMISCCIRNNRTRDALSLFDVMQGSSYKCEPDDVTCLLLLQAC 217
Query: 95 WQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 154
+ + IHGY +RG+ +++ N LI Y++CGC+ A ++F+ + KN+V
Sbjct: 218 AHLNALEFGERIHGYIMERGYRDA-LNLCNSLISMYSRCGCLDKAYEVFKGMG--NKNVV 274
Query: 155 SWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKM 214
SW+++ISG AM+G G+EA+E FE M ++ + P+ TF VL+ACS+ G+V+EG+ FF +M
Sbjct: 275 SWSAMISGLAMNGYGREAIEAFEEMLRIGVLPDDQTFTGVLSACSYSGMVDEGMSFFHRM 334
Query: 215 VEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
E V P++ HYGC++D+LGRAG L++A ++ + + + +WRTLLGAC HG+V
Sbjct: 335 SREFGVTPNVHHYGCMVDLLGRAGLLDKAYQLIMSMVVK-PDSTMWRTLLGACRIHGHVT 393
Query: 275 MGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+GERV ++E++ GDYVL+ NI + + +R+++ ++ PG S +
Sbjct: 394 LGERVIGHLIELKAQEAGDYVLLLNIYSSAGHWEKVAEVRKLMKNKSIQTTPGCSTI 450
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 4/148 (2%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I+ + G L+ A +F+ M +NVVSW+ +I G A+ F M+
Sbjct: 246 NSLISMYSRCGCLDKAYEVFKGMGNKNVVSWSAMISGLAMNGYGREAIEAFEEMLRIGVL 305
Query: 81 EPSEITILAVFPAIWQNGDV-RNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSA 139
P + T V A +G V H + G ++H C++D + G + A
Sbjct: 306 -PDDQTFTGVLSACSYSGMVDEGMSFFHRMSREFGVTP-NVHHYGCMVDLLGRAGLLDKA 363
Query: 140 LKLFEDISVERKNLVSWTSIISGFAMHG 167
+L + V + + W +++ +HG
Sbjct: 364 YQLIMSMVV-KPDSTMWRTLLGACRIHG 390
>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 783
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 116/303 (38%), Positives = 180/303 (59%), Gaps = 5/303 (1%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
K E++ AR LF+E P + VV+W +I GYT+ + A++LF+ M+ E+T P+ +TI
Sbjct: 357 KLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFT-PNAVTIT 415
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
+ A Q G + + +H + +I+VS L+D YAKCG I A +LF+ +S
Sbjct: 416 TILSACAQLGSLSFGKWVHHLIKSENLEP-NIYVSTALVDMYAKCGNISEAWQLFDSMS- 473
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
KN V+W ++I G+ +HG G EA++ + M + P+ VTFLSVL ACSH GLV EG
Sbjct: 474 -EKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGE 532
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
+ F MV + + P I+HY C++D+LGR+G+LE+A + +P E VW TLLGAC
Sbjct: 533 EIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVE-PGPAVWGTLLGACM 591
Query: 269 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGR 328
H + ++ + ++ E++ G G YVL+ NI + + A +R+VV +R K PG
Sbjct: 592 IHKDTDIARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGC 651
Query: 329 SLV 331
+L+
Sbjct: 652 TLI 654
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 144/371 (38%), Gaps = 77/371 (20%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV------------------ 48
K+FD +PER+ V WN MI GLVK + + LF EM V
Sbjct: 164 KVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQ 223
Query: 49 ---------------------VSWTGIIDGYTRMNRSNGALALFRRM------------- 74
TG+I Y++ N A LFRR+
Sbjct: 224 ELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMIS 283
Query: 75 --VACEYTE---------------PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
A TE S TI+ + P G + IHG+ K G
Sbjct: 284 GFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGI-I 342
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
+ VS Y K I A LF++ K +V+W ++ISG+ +G + A+ F+
Sbjct: 343 LNPTVSTAFTAIYNKLNEIDLARHLFDE--SPEKTVVAWNAMISGYTQNGSTETAISLFK 400
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
M K PN VT ++L+AC+ G + G K+ +++ + P+I L+DM +
Sbjct: 401 EMMKTEFTPNAVTITTILSACAQLGSLSFG-KWVHHLIKSENLEPNIYVSTALVDMYAKC 459
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297
G + +A ++ + + N V W T++ HG ++ ++L + GY V
Sbjct: 460 GNISEAWQLFDSMSEK--NTVTWNTMIFGYGLHGYGHEALKLYNEMLHL--GYNPSAVTF 515
Query: 298 YNILAGVWRYG 308
++L G
Sbjct: 516 LSVLYACSHAG 526
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 138/305 (45%), Gaps = 31/305 (10%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
N+ + ++ K+ + YAR +F+ MP R+ V W +I+G + + ++ LFR MV
Sbjct: 142 NVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMV 201
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
A + T+ AV PA + +++ I K GF F +V LI Y+KCG
Sbjct: 202 A-DGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGF-GFCDYVLTGLISLYSKCGD 259
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF-------ERMQK---VVLK 185
+ +A LF I+ R +L+++ ++ISGF +G + +V+ F ER+ V L
Sbjct: 260 VNTARLLFRRIN--RPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLI 317
Query: 186 PNRVTFLSVLNACS-HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
P F + ACS HG V+ G+ + V + + ++ A
Sbjct: 318 PLHSPFGHLHLACSIHGFCVKSGI-ILNPTVST-----------AFTAIYNKLNEIDLAR 365
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+ P + VV W ++ + +G+ E + +++++ E + + V + IL+
Sbjct: 366 HLFDESPEK--TVVAWNAMISGYTQNGSTETAISLFKEMMKTE--FTPNAVTITTILSAC 421
Query: 305 WRYGD 309
+ G
Sbjct: 422 AQLGS 426
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/184 (18%), Positives = 84/184 (45%), Gaps = 6/184 (3%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
+L T + L + +AR+LF +P ++ + ++ G++ + + +++L+ +
Sbjct: 43 DLATLTKLTQKLFDFSATRHARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLR 102
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
P T A + ++ L+H + G+ + ++ V + L+D Y K
Sbjct: 103 RNTNLSPDNFTYAFAVAACSND---KHLMLLHAHSIIDGYGS-NVFVGSALVDLYCKFSR 158
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ A K+F+ + ++ V W ++I+G + ++++ F M ++ + T +VL
Sbjct: 159 VVYARKVFD--GMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVL 216
Query: 196 NACS 199
A +
Sbjct: 217 PAAA 220
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/319 (37%), Positives = 194/319 (60%), Gaps = 9/319 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL N +I +K GE+E A LFE + ++V+SW +I GYT MN AL LF+ M+
Sbjct: 269 NLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEML 328
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR---GFNAFHIHVSNCLIDTYAK 132
+ P+E+T+L++ PA G + + IH Y +KR N + S LID YAK
Sbjct: 329 RSGES-PNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTS--LIDMYAK 385
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
CG I +A ++F+ S+ ++L SW ++I GFAMHG A + F RM+K ++P+ +TF+
Sbjct: 386 CGDIEAAQQVFD--SMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFV 443
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
+L+ACSH G+++ G F M E+ ++ P ++HYGC+ID+LG +G ++AE++ + +
Sbjct: 444 GLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEM 503
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312
+ + V+W +LL AC HGNVE+GE + ++++E G YVL+ NI A R+ + +
Sbjct: 504 D-PDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAK 562
Query: 313 LRRVVDERNALKFPGRSLV 331
R +++++ K PG S +
Sbjct: 563 RRALLNDKGMKKVPGCSSI 581
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 146/272 (53%), Gaps = 11/272 (4%)
Query: 3 KDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
+D K+FD+ R++V++ +I G G + A+ +F+E+P ++VVSW +I GY
Sbjct: 155 EDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETG 214
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV 122
AL LF+ M+ +P E T++ V A Q+ + + +H + + GF + ++ +
Sbjct: 215 NYKEALELFKEMMKTN-VKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGS-NLKI 272
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
N LID Y KCG + +A LFE +S K+++SW ++I G+ + KEA+ F+ M +
Sbjct: 273 VNALIDLYIKCGEVETASGLFEGLSY--KDVISWNTLIGGYTHMNLYKEALLLFQEMLRS 330
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEG---LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
PN VT LS+L AC+H G ++ G + DK ++ ++ LIDM + G
Sbjct: 331 GESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLR--TSLIDMYAKCGD 388
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+E A++V + + ++ W ++ + HG
Sbjct: 389 IEAAQQVFDSMLNR--SLSSWNAMIFGFAMHG 418
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 126/279 (45%), Gaps = 44/279 (15%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
L YA S+F+ + N++ W + G+ + AL L+ M++ P+ T +
Sbjct: 53 LTYAISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLV-PNSYTFPFLLK 111
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
A ++ R Q IHG+ K G + ++V LI Y K G A K+F+ S ++
Sbjct: 112 ACAKSKAFREGQQIHGHVLKLGCD-LDLYVHTSLIAMYVKNGRXEDARKVFDQSS--HRD 168
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
+VS+T++I G+A +G A + F+ + + V++ ++++ + G +E L+ F
Sbjct: 169 VVSYTALIKGYASNGYIXSAQKMFDEIPV----KDVVSWNALISGYAETGNYKEALELFK 224
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
+M++ ++K P E T V T+L AC+ +
Sbjct: 225 EMMKT-----NVK-------------------------PDESTMV----TVLSACAQSAS 250
Query: 273 VEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
+E+G +V I + G+G + ++ ++ + G+ E
Sbjct: 251 IELGRQVHSWI--DDHGFGSNLKIVNALIDLYIKCGEVE 287
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 195/331 (58%), Gaps = 9/331 (2%)
Query: 5 GSKLFDELPERNLVT----WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
G ++ ++ E L T N ++ G ++ AR +F+ M R++V++ +I GY
Sbjct: 448 GRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAA 507
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
N AL LF R+ E +P ++T + + A +G + + IH K GF +
Sbjct: 508 HNLGKEALKLFDRLQE-EGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFS-DT 565
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V N L+ TYAKCG A +FE ++ ++N++SW +II G A HG G++A++ FERM+
Sbjct: 566 SVGNALVSTYAKCGSFSDASIVFEKMT--KRNVISWNAIIGGSAQHGRGQDALQLFERMK 623
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+KP+ VTF+S+L+ACSH GL+EEG ++F M ++ ++P I+HYGC++D+LGRAG+L
Sbjct: 624 MEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQL 683
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
++AE + +P + N +W LLGAC HGNV + ER L+++ YV + ++
Sbjct: 684 DEAEALIKTMPFQ-ANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHM 742
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + A +LR+++++R K PGRS +
Sbjct: 743 YAAAGMWDSAAKLRKLMEQRGVTKEPGRSWI 773
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 146/316 (46%), Gaps = 44/316 (13%)
Query: 3 KDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
KD ++F++L R+L+ WN MI GL + G E A ++ +M V+
Sbjct: 279 KDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVM------------- 325
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV 122
P++IT + + A + + + IH K GF + I V
Sbjct: 326 -------------------PNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTS-DIGV 365
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
N LI Y++CG I A +F+ + RK+++SWT++I G A G G EA+ ++ MQ+
Sbjct: 366 QNALISMYSRCGSIKDARLVFDKMV--RKDVISWTAMIGGLAKSGFGAEALTVYQEMQQA 423
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG-CLIDMLGRAGRLE 241
++PNRVT+ S+LNACS +E G + ++VE L H G L++M G ++
Sbjct: 424 GVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAG--LATDAHVGNTLVNMYSMCGSVK 481
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM-ERGYGGDYVLMYNI 300
A +V + ++V + ++G + H +G+ + + E G D V N+
Sbjct: 482 DARQVFDRMIQR--DIVAYNAMIGGYAAH---NLGKEALKLFDRLQEEGLKPDKVTYINM 536
Query: 301 LAGVWRYGDAERLRRV 316
L G E R +
Sbjct: 537 LNACANSGSLEWAREI 552
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/339 (25%), Positives = 153/339 (45%), Gaps = 48/339 (14%)
Query: 19 TWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYTRMNRSNGALALFRRMVA 76
T N +I ++ G +E AR +++++ R V SW ++ GY + AL L R+M
Sbjct: 60 TVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQ 119
Query: 77 CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136
P TI++ + G + + IH + G F + V+NC+++ YAKCG I
Sbjct: 120 -HGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGL-LFDVKVANCILNMYAKCGSI 177
Query: 137 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLN 196
A ++F+ + E+K++VSWT I G+A G + A E F++M++ + PNR+T++SVLN
Sbjct: 178 EEAREVFDKM--EKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLN 235
Query: 197 ACSHGGLVEEGLKFFD------------------KMVEECEVLPDIKH------------ 226
A S ++ G KM +C D +
Sbjct: 236 AFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIA 295
Query: 227 YGCLIDMLGRAGRLEQAEKVASG------IPSEITNVVVWRTLLGACSFHGNVEMGERVT 280
+ +I L G E+A +V + +P++IT V++ + + + H E+ RV
Sbjct: 296 WNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVA 355
Query: 281 RKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319
+ + G + MY+ R G + R V D+
Sbjct: 356 KAGFTSDIGVQNALISMYS------RCGSIKDARLVFDK 388
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 148/314 (47%), Gaps = 40/314 (12%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+KD +FD++ +++++W MI GL K G A ++++EM V
Sbjct: 379 IKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGV------------- 425
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
EP+ +T ++ A + + IH + G A H
Sbjct: 426 -------------------EPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGL-ATDAH 465
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N L++ Y+ CG + A ++F+ + ++++V++ ++I G+A H +GKEA++ F+R+Q+
Sbjct: 466 VGNTLVNMYSMCGSVKDARQVFDRMI--QRDIVAYNAMIGGYAAHNLGKEALKLFDRLQE 523
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
LKP++VT++++LNAC++ G +E + +V + D L+ + G
Sbjct: 524 EGLKPDKVTYINMLNACANSGSLEWA-REIHTLVRKGGFFSDTSVGNALVSTYAKCGSFS 582
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A V + NV+ W ++G + HG + ++ + ++ME G D V ++L
Sbjct: 583 DASIVFEKMTKR--NVISWNAIIGGSAQHGRGQDALQLFER-MKME-GVKPDIVTFVSLL 638
Query: 302 AGVWRYGDAERLRR 315
+ G E RR
Sbjct: 639 SACSHAGLLEEGRR 652
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/343 (23%), Positives = 142/343 (41%), Gaps = 79/343 (23%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+++ ++FD++ ++++V+W + I G G E A +F++M VV
Sbjct: 177 IEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVV------------ 224
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH-- 119
P+ IT ++V A ++ + +H R NA H
Sbjct: 225 --------------------PNRITYISVLNAFSSPAALKWGKAVHS----RILNAGHES 260
Query: 120 -IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER 178
V L+ YAKCG ++FE + ++L++W ++I G A G +EA E + +
Sbjct: 261 DTAVGTALVKMYAKCGSYKDCRQVFEKLV--NRDLIAWNTMIGGLAEGGYWEEASEVYNQ 318
Query: 179 MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
MQ+ + PN++T++ +LNAC + + G + + V + DI LI M R G
Sbjct: 319 MQREGVMPNKITYVILLNACVNSAALHWGKEIHSR-VAKAGFTSDIGVQNALISMYSRCG 377
Query: 239 RLEQAEKV--------------------ASGIPSEITNV-------------VVWRTLLG 265
++ A V SG +E V V + ++L
Sbjct: 378 SIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILN 437
Query: 266 ACSFHGNVEMGERVTRKILE----MERGYGGDYVLMYNILAGV 304
ACS +E G R+ ++++E + G V MY++ V
Sbjct: 438 ACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSV 480
>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 194/343 (56%), Gaps = 18/343 (5%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDG---- 57
+ + +LFD +P +++V MI GL G L AR +F+EMP RNVV+WT +I G
Sbjct: 103 VDEARQLFDMMPVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDD 162
Query: 58 ---------YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHG 108
Y R ALALF M E PS ++++V + + + +H
Sbjct: 163 GTWSTMIKIYERKGFELEALALFSLMQR-EGVRPSFPSVISVLSVCGSLASLDHGRQVHS 221
Query: 109 YGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 168
+ F+ I+VS+ LI Y KCG + +A ++F+ S K++V W SII+G+A HG
Sbjct: 222 QLVRSQFD-IDIYVSSVLITMYIKCGDLVTAKRVFDRFS--SKDIVMWNSIIAGYAQHGF 278
Query: 169 GKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG 228
G++A+E F M + P+ +TF+ VL+ACS+ G V+EGL+ F+ M + +V P +HY
Sbjct: 279 GEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYA 338
Query: 229 CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
C++D+LGRAG+L +A + +P E + +VW LLGAC H N+++ E +K+L++E
Sbjct: 339 CMVDLLGRAGKLNEAMNLIENMPVE-ADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEP 397
Query: 289 GYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
G Y+L+ N+ + R+ D LR+ + +N K PG S +
Sbjct: 398 NNAGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSWI 440
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 141/282 (50%), Gaps = 28/282 (9%)
Query: 3 KDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
++ KLFD++PE N ++WN +++G V+ G + AR +F++MP RNVVSWT +I GY +
Sbjct: 11 REARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEG 70
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV 122
A LF RM E + ++ + + ++G V + + + A
Sbjct: 71 LIEEAELLFWRM-----PERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVA----- 120
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISG-------------FAMHGMG 169
S +ID G + A ++F+++ ++N+V+WTS+ISG + G
Sbjct: 121 STNMIDGLCSEGRLIEAREIFDEMP--QRNVVAWTSMISGEKDDGTWSTMIKIYERKGFE 178
Query: 170 KEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC 229
EA+ F MQ+ ++P+ + +SVL+ C ++ G + ++V + DI
Sbjct: 179 LEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLV-RSQFDIDIYVSSV 237
Query: 230 LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
LI M + G L A++V S+ ++V+W +++ + HG
Sbjct: 238 LITMYIKCGDLVTAKRVFDRFSSK--DIVMWNSIIAGYAQHG 277
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/315 (35%), Positives = 182/315 (57%), Gaps = 6/315 (1%)
Query: 17 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVA 76
L N ++ K G +E A +F ++P +++VSW +I GY++ + N AL LF M
Sbjct: 790 LPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQ- 848
Query: 77 CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136
+ + P IT+ + PA + + IHG + G+++ +HV+N LID Y KCG +
Sbjct: 849 -KESRPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSS-ELHVANALIDMYVKCGSL 906
Query: 137 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLN 196
A LF+ I K+L++WT +ISG MHG+G EA+ F++M+ +KP+ +TF S+L
Sbjct: 907 VHARLLFDMIP--EKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILY 964
Query: 197 ACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256
ACSH GL+ EG FF+ M+ EC + P ++HY C++D+L R G L +A + +P + +
Sbjct: 965 ACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIK-PD 1023
Query: 257 VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRV 316
+W LL C H +VE+ E+V + E+E G YVL+ NI A ++ + ++LR
Sbjct: 1024 ATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRER 1083
Query: 317 VDERNALKFPGRSLV 331
+ +R K PG S +
Sbjct: 1084 IGKRGLKKSPGCSWI 1098
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 128/248 (51%), Gaps = 7/248 (2%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I K GE++ A LF+E+ R+VVSW +I G S+ AL F +M+
Sbjct: 592 NSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILR-V 650
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
T++ A G + + +HG G K F+ + +N L+D Y+KCG + A+
Sbjct: 651 GVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSR-EVMFNNTLLDMYSKCGNLNDAI 709
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
+ FE + +K +VSWTS+I+ + G+ +A+ F M+ + P+ + SVL+AC+
Sbjct: 710 QAFEKMG--QKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACAC 767
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
G +++G + + + L + L+DM + G +E+A V S IP + ++V W
Sbjct: 768 GNSLDKGRDVHNYIRKNNMALC-LPVSNALMDMYAKCGSMEEAYLVFSQIP--VKDIVSW 824
Query: 261 RTLLGACS 268
T++G S
Sbjct: 825 NTMIGGYS 832
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 122/257 (47%), Gaps = 8/257 (3%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
R ++ N ++ K G L A FE+M + VVSWT +I Y R + A+ LF M
Sbjct: 687 REVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEM 746
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
+ + P ++ +V A + + +H Y K A + VSN L+D YAKCG
Sbjct: 747 ES-KGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNM-ALCLPVSNALMDMYAKCG 804
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
+ A +F I V K++VSW ++I G++ + + EA++ F MQK +P+ +T +
Sbjct: 805 SMEEAYLVFSQIPV--KDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACL 861
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L AC +E G ++ ++ LIDM + G L A + IP +
Sbjct: 862 LPACGSLAALEIGRGIHGCILRN-GYSSELHVANALIDMYVKCGSLVHARLLFDMIPEK- 919
Query: 255 TNVVVWRTLLGACSFHG 271
+++ W ++ C HG
Sbjct: 920 -DLITWTVMISGCGMHG 935
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 129/276 (46%), Gaps = 12/276 (4%)
Query: 28 VKWGELEYARSLFEEMPCRN-VVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEIT 86
V G L R +F+ + N V W ++ Y ++ ++ LF++M T S T
Sbjct: 497 VSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNS-YT 555
Query: 87 ILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI 146
+ G V C+ IHG K GF +++ V N LI TY K G + SA KLF+++
Sbjct: 556 FSCILKCFATLGRVGECKRIHGCVYKLGFGSYNT-VVNSLIATYFKSGEVDSAHKLFDEL 614
Query: 147 SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEE 206
+++VSW S+ISG M+G A+E F +M + + + T ++ + AC++ G +
Sbjct: 615 G--DRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSL 672
Query: 207 GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
G + V+ C ++ L+DM + G L A + + + VV W +L+ A
Sbjct: 673 GRALHGQGVKAC-FSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQK--TVVSWTSLIAA 729
Query: 267 CSFHGNVEMGERVTRKILEME-RGYGGDYVLMYNIL 301
G + + R EME +G D M ++L
Sbjct: 730 YVREG---LYDDAIRLFYEMESKGVSPDVYSMTSVL 762
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV----VSWTGIIDGYTRMNR 63
LFD +PE++L+TW VMI+G G A + F++M + +++T I+ +
Sbjct: 912 LFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGL 971
Query: 64 SNGALALFRRMVACEYTEP 82
N F M++ EP
Sbjct: 972 LNEGWGFFNSMISECNMEP 990
>gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays]
gi|223947871|gb|ACN28019.1| unknown [Zea mays]
gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays]
Length = 651
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 121/328 (36%), Positives = 198/328 (60%), Gaps = 10/328 (3%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD + +WN MI+G +K G +E A++LF+ MP ++ VSW+ +I G N+S+
Sbjct: 325 RLFDNGESLDHFSWNSMISGYLKNGRVEDAKALFDVMPDKDNVSWSAMIAGCVHNNQSSE 384
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL +F M A E +P ++T+++V A + +L+H Y K +N I + L
Sbjct: 385 ALNVFDSMRAHE-IKPDDVTLVSVISACSNLSALEQGKLVHEYIRKYQYN-ITIVLGTSL 442
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV-VLK 185
ID Y KCGC+ +AL++F+ +E K W ++I G AM+G+ +++ F M+
Sbjct: 443 IDMYMKCGCMEAALEVFD--MLEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMEATGTAV 500
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN +TF VL+AC HGGLVEEG +FF M + +++P+I+HYGC++D+LGRAG + +AE
Sbjct: 501 PNEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIVPNIRHYGCMVDLLGRAGYVREAED 560
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA--G 303
+ +P +V W LLGAC HG+ E+GERV +K+++++ + G ++ NI A G
Sbjct: 561 MIQSMPMS-PDVPAWGALLGACWKHGDSEVGERVGKKLVKLDPDHDGFQTMLSNIYASEG 619
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
+W+ + LR + +++ K G S+V
Sbjct: 620 MWQC--VKDLRGSMKQQHVAKVAGCSMV 645
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 135/281 (48%), Gaps = 39/281 (13%)
Query: 1 FLKDGS-----KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGII 55
+++DG K+F +PER+ + M+ + G +E AR +F+ R+ +WT ++
Sbjct: 182 YVRDGDVEQAVKVFTRMPERSAAAVSAMVALFARRGMVEEARGVFDGAEHRDAFTWTAMV 241
Query: 56 DGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF 115
+ R + ALA+F M E E +++V A ++G ++N ++ HG + G
Sbjct: 242 SCFERNDLFMEALAVFSDMRE-EGWPVDEAVMVSVVAACAKSGVIQNGEVCHGLVVRAGL 300
Query: 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFE------------------------------D 145
+ ++V N LI Y+ C + +A +LF+ D
Sbjct: 301 GS-RVNVQNVLIHMYSSCQDVVAARRLFDNGESLDHFSWNSMISGYLKNGRVEDAKALFD 359
Query: 146 ISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVE 205
+ ++ N VSW+++I+G + EA+ F+ M+ +KP+ VT +SV++ACS+ +E
Sbjct: 360 VMPDKDN-VSWSAMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSVISACSNLSALE 418
Query: 206 EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+G K + + + + I LIDM + G +E A +V
Sbjct: 419 QG-KLVHEYIRKYQYNITIVLGTSLIDMYMKCGCMEAALEV 458
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 124/298 (41%), Gaps = 30/298 (10%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACE--YTEPSEITILAV 90
L ++ LF + N + ++ R + L+ M A YT P +LA
Sbjct: 59 LHHSLQLFGLVRSPNAFTCNTLLKAALRQGFPHLCFPLYASMPAAPDTYTHP----LLAA 114
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A GDVR +H + K GF+ ++++ N L+ Y+ CGC+ SA ++F+ V
Sbjct: 115 --ACAARGDVREGLQVHSHSVKHGFSD-NLYLRNALMHMYSACGCVASARRVFDAGPV-- 169
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC--SHGGLVEEGL 208
+ VSW +I++ + G ++AV+ F RM P R + G+VEE
Sbjct: 170 WDAVSWNTILATYVRDGDVEQAVKVFTRM------PERSAAAVSAMVALFARRGMVEEAR 223
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE--ITNVVVWRTLLGA 266
FD D + ++ R +A V S + E + V +++ A
Sbjct: 224 GVFDGAEHR-----DAFTWTAMVSCFERNDLFMEALAVFSDMREEGWPVDEAVMVSVVAA 278
Query: 267 CSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY-GDAERLRRVVDERNAL 323
C+ G ++ GE ++ R G V + N+L ++ D RR+ D +L
Sbjct: 279 CAKSGVIQNGEVCHGLVV---RAGLGSRVNVQNVLIHMYSSCQDVVAARRLFDNGESL 333
>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 611
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 120/301 (39%), Positives = 177/301 (58%), Gaps = 5/301 (1%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G L AR++FE MP + V+W+ +I GY R S+ A+ LFR M P E+T++ V
Sbjct: 187 GFLGDARNVFERMPRESAVTWSAMIGGYVRAGLSSDAVVLFRGM-QVSGVRPDEVTVIGV 245
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A G + + + + E+ G + + N LIDT AKCG + A+ +FE + E
Sbjct: 246 LAAAADLGALELTRWVGRFVEREGIGK-SVTLCNALIDTLAKCGDVDGAVAVFEGM--EE 302
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
+ +VSWTS+I AM G GKEAV FE M+ V + P+ V F+ VL ACSH G+V+EG +
Sbjct: 303 RTVVSWTSVIDALAMEGRGKEAVGVFEEMKAVGVLPDDVAFIGVLTACSHAGMVDEGRGY 362
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
FD M E + P I+HYGC++DM GRAG +EQ + +P + N ++WRTL+ AC H
Sbjct: 363 FDSMKTEYGIEPKIEHYGCMVDMFGRAGMVEQGLEFVRAMPMK-PNPIIWRTLVAACRAH 421
Query: 271 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSL 330
G +E+GE +TR +L + +YV++ N+ A R+ + +RR + +R K PG SL
Sbjct: 422 GRLELGESITRNLLNEFPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSL 481
Query: 331 V 331
V
Sbjct: 482 V 482
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
+++ N +I L K G+++ A ++FE M R VVSWT +ID R A+ +F M
Sbjct: 272 KSVTLCNALIDTLAKCGDVDGAVAVFEGMEERTVVSWTSVIDALAMEGRGKEAVGVFEEM 331
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG-FNAF--------HIHVSNC 125
A P ++ + V A G V E RG F++ I C
Sbjct: 332 KAVGVL-PDDVAFIGVLTACSHAGMV---------DEGRGYFDSMKTEYGIEPKIEHYGC 381
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 167
++D + + G + L+ + + + N + W ++++ HG
Sbjct: 382 MVDMFGRAGMVEQGLEFVRAMPM-KPNPIIWRTLVAACRAHG 422
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/318 (37%), Positives = 195/318 (61%), Gaps = 7/318 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL N +I +K GE+E A LFE + ++V+SW +I GYT MN AL LF+ M+
Sbjct: 254 NLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEML 313
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR--GFNAFHIHVSNCLIDTYAKC 133
+ P+++T+L++ PA G + + IH Y KR G H ++ LID YAKC
Sbjct: 314 RSGES-PNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTS-LIDMYAKC 371
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G I +A ++F+ S+ ++L SW ++I GFAMHG A + F RM+K ++P+ +TF+
Sbjct: 372 GDIEAAQQVFD--SILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVG 429
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L+ACSH G+++ G F M E+ ++ P ++HYGC+ID+LG +G ++AE++ + + E
Sbjct: 430 LLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEME 489
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
+ V+W +LL AC HGNVE+GE + ++++E G YVL+ NI A R+ + ++
Sbjct: 490 -PDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKI 548
Query: 314 RRVVDERNALKFPGRSLV 331
R +++++ K PG S +
Sbjct: 549 RALLNDKGMKKVPGCSSI 566
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 149/273 (54%), Gaps = 11/273 (4%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+D K+FD+ R++V++ +ITG G + A+ +F+E+P ++VVSW +I GY
Sbjct: 139 LEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAET 198
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ AL LF+ M+ P E T+++V A Q+ + + +H + + GF + ++
Sbjct: 199 GNNKEALELFKEMMKTN-VRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGS-NLK 256
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N LID Y KCG + +A LFE +S K+++SW ++I G+ + KEA+ F+ M +
Sbjct: 257 IVNALIDLYIKCGEVETACGLFEGLSY--KDVISWNTLIGGYTHMNLYKEALLLFQEMLR 314
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEG---LKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
PN VT LS+L AC+H G +E G + +K ++ V H LIDM + G
Sbjct: 315 SGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLK--GVANASSHRTSLIDMYAKCG 372
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+E A++V I + ++ W ++ + HG
Sbjct: 373 DIEAAQQVFDSILNR--SLSSWNAMIFGFAMHG 403
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 5/145 (3%)
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198
A+ +FE +++ NL+ W ++ G A+ A+ + M + L PN TF +L +C
Sbjct: 41 AISVFE--TIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSC 98
Query: 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
+ EG + +++ L D+ + LI M + GRLE A KV S +VV
Sbjct: 99 AKSKAFREGQQIHGHVLKLGYDL-DLYVHTSLISMYVQNGRLEDARKVFD--QSSHRDVV 155
Query: 259 VWRTLLGACSFHGNVEMGERVTRKI 283
+ L+ + G + +++ +I
Sbjct: 156 SYTALITGYASKGYIASAQKMFDEI 180
>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
gi|194689034|gb|ACF78601.1| unknown [Zea mays]
gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
Length = 606
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 187/310 (60%), Gaps = 6/310 (1%)
Query: 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTE 81
+I + G+ AR F VVS+ +I R +R AL LFR M A +
Sbjct: 173 TLINMYAECGDARAARVTFGRADGDCVVSYNAMIAAAVRSSRPGEALVLFREMQA-KGLN 231
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
P+ +T+++V A G ++ + +H Y K G + + VS L+D YAKCG + A+
Sbjct: 232 PTPVTVISVLSACALLGALQLGRWLHDYVRKLGLGSL-VKVSTALVDMYAKCGSLEDAIA 290
Query: 142 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHG 201
+F+ +E ++ +W+ +I +A HG G+EA+ FE M+K +KP+ +TFL +L ACSH
Sbjct: 291 VFQ--GMESRDRQAWSVMIVAYANHGYGREAISLFEEMKKQGMKPDDITFLGLLYACSHS 348
Query: 202 GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWR 261
GLV EGL++FD M ++ ++P IKHYGC+ D+L R+G+LE+A K +P T ++WR
Sbjct: 349 GLVSEGLRYFDDM-KDHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTP-ILWR 406
Query: 262 TLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321
TLL AC HG+VE+G+RV +ILE++ +GGDYV+ N+ A + + R+R+++ ++
Sbjct: 407 TLLSACGGHGDVELGKRVFERILELDDSHGGDYVIFSNLCANTGYWEEMNRVRKLMSDKG 466
Query: 322 ALKFPGRSLV 331
+K PG S +
Sbjct: 467 VVKVPGCSSI 476
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 111/247 (44%), Gaps = 13/247 (5%)
Query: 31 GELEYARSLFEEMPCRNVVSW-TGIIDGYTRMNRSNGA-----LALFRRMVACEYTEPSE 84
L YAR +F+ + + W ++ GY R + S+ + + +F RM+ E P
Sbjct: 75 AHLAYARQVFDRVTQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRMLE-EGVAPDT 133
Query: 85 ITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFE 144
T +++ A + + H K G A H +V LI+ YA+CG +A F
Sbjct: 134 YTFVSLLKACAAARAGEHGRQAHAVAVKLG-AAGHDYVRPTLINMYAECGDARAARVTFG 192
Query: 145 DISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLV 204
+ +VS+ ++I+ EA+ F MQ L P VT +SVL+AC+ G +
Sbjct: 193 --RADGDCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLSACALLGAL 250
Query: 205 EEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
+ G ++ V + + +K L+DM + G LE A V G+ S + W ++
Sbjct: 251 QLG-RWLHDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMESR--DRQAWSVMI 307
Query: 265 GACSFHG 271
A + HG
Sbjct: 308 VAYANHG 314
>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
Length = 748
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/316 (35%), Positives = 181/316 (57%), Gaps = 4/316 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
+++ N ++ K ++E A+ +F+ MP R+ VSW +I GY + ++ A+ ++ M
Sbjct: 306 DIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQ 365
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
E +P + T ++V PA G ++ +H K G N ++V C+ID YAKCG
Sbjct: 366 KHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLN-LDVYVGTCVIDLYAKCGK 424
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ A+ LFE R++ W ++ISG +HG G +A+ F +MQ+ + P+ VTF+S+L
Sbjct: 425 LDEAMLLFE--QTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLL 482
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
ACSH GLV++G FF+ M + P KHY C++DM GRAG+L+ A +P +
Sbjct: 483 AACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIK-P 541
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
+ +W LLGAC HGNVEMG+ ++ + E++ G YVLM N+ A V ++ + +R
Sbjct: 542 DSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRS 601
Query: 316 VVDERNALKFPGRSLV 331
+V +N K PG S +
Sbjct: 602 LVRRQNLQKTPGWSSI 617
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 156/303 (51%), Gaps = 11/303 (3%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ L N MI K G LE R +F+ M R++V+W II G+ + + A+ +F
Sbjct: 202 DDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCG 261
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M + P +T+L++ AI Q GD+ + +H Y +RG++ I N ++D YAK
Sbjct: 262 MRDSGVS-PDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKL 320
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFL 192
I +A ++F+ + V ++ VSW ++I+G+ +G+ EA+ ++ MQK LKP + TF+
Sbjct: 321 SKIEAAQRMFDSMPV--RDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFV 378
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
SVL A SH G +++G + ++ L D+ C+ID+ + G+L++A + P
Sbjct: 379 SVLPAYSHLGALQQGTRMHALSIKTGLNL-DVYVGTCVIDLYAKCGKLDEAMLLFEQTPR 437
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER-GYGGDYVLMYNILAGVWRYGDAE 311
T W ++ HG+ G + +M++ G D+V ++LA G +
Sbjct: 438 RSTG--PWNAVISGVGVHGH---GAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVD 492
Query: 312 RLR 314
+ R
Sbjct: 493 QGR 495
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 119/243 (48%), Gaps = 6/243 (2%)
Query: 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTE 81
++ +++G + A F+EM R+V +W ++ G R R+ A+ LF RMV E
Sbjct: 109 ALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMV-MEGVA 167
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
+T+ +V P GD +H Y K G + + V N +ID Y K G + K
Sbjct: 168 GDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDD-ELFVCNAMIDVYGKLGMLEEVRK 226
Query: 142 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHG 201
+F+ +S ++LV+W SIISG G AVE F M+ + P+ +T LS+ +A +
Sbjct: 227 VFDGMS--SRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQC 284
Query: 202 GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWR 261
G + G MV + DI ++DM + ++E A+++ +P + + V W
Sbjct: 285 GDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMP--VRDAVSWN 342
Query: 262 TLL 264
TL+
Sbjct: 343 TLI 345
>gi|297744558|emb|CBI37820.3| unnamed protein product [Vitis vinifera]
Length = 504
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 115/324 (35%), Positives = 186/324 (57%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LF E+P + +TWN MI+G + G LE AR+LF +P +N+VSW +I GY GA
Sbjct: 180 LFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGA 239
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L+R+M+ + +P T+ +V + IH K I ++N LI
Sbjct: 240 TELYRQML-LQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVIP--DIPINNSLI 296
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
Y++CG I A +F+++ ++ K ++SW ++I G+A HG +A+E FE M+++ ++P
Sbjct: 297 TMYSRCGAIVEARTIFDEVKLQ-KEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPT 355
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TF+SVLNAC+H G V+EG F M E + P I+H+ L+D++GR G+LE+A +
Sbjct: 356 YITFISVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLI 415
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+ +P E + VW LLGAC H NVE+ ++++E YVL++N+ A V ++
Sbjct: 416 NSMPFE-PDKAVWGALLGACRVHNNVELARVAAEALMKLEPESSAPYVLLHNMYADVGQW 474
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
+A +R +++ N K PG S V
Sbjct: 475 DNATEMRMMMERNNIRKQPGYSWV 498
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 125/295 (42%), Gaps = 60/295 (20%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + +LFD + ERN+V+WN M+TG ++ G++E A F MP R+ S + ++ G +
Sbjct: 1 MDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQ- 59
Query: 62 NRSNGALALFRRMVACEYTEPSEITILA-----VFPAIWQNGDVRNCQLI------HGYG 110
NG L +R++ + + L + QNG V + + + G
Sbjct: 60 ---NGELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGG 116
Query: 111 EKRGFNAFHIHVS-NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 169
+K G VS N +I Y K IFSA LF+ + + ++ +SW ++ISG+
Sbjct: 117 QKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQM--KERDTISWNTMISGYVRMSDM 174
Query: 170 KEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC 229
+EA F+ M PN PD +
Sbjct: 175 EEAWMLFQEM------PN----------------------------------PDTLTWNS 194
Query: 230 LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKIL 284
+I + G LE A + + IP + N+V W +++ +G+ + + R++L
Sbjct: 195 MISGFAQKGNLELARALFATIPQK--NLVSWNSMIAGYENNGDYKGATELYRQML 247
>gi|242048970|ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
gi|241925606|gb|EER98750.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
Length = 686
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/332 (36%), Positives = 183/332 (55%), Gaps = 24/332 (7%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L++ ++FD +PE+N V+WN M+ V+ +E A+ LF+ MPCRNV SW ++ GY +
Sbjct: 267 MLEEAKRVFDAMPEKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQ 326
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNG-DVRNCQLIHGYGEKRGFNAFH 119
+ A A+F M + ++ A+ A Q G QL G
Sbjct: 327 AGMLDEARAIFDMM-----PQKDAVSWAAMLAAYSQGGFSEETLQLFKEMGR-------- 373
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
C + Y KCG + A FE++ E +++VSW ++I+G+A HG GKEA+E F+ M
Sbjct: 374 -----CAM--YFKCGNMEEAHSAFEEM--EERDIVSWNTMIAGYARHGFGKEALEVFDTM 424
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+K KP+ +T + VL ACSH GLVE+G+ +F M + V +HY C+ID+LGRAGR
Sbjct: 425 RKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVTAKPEHYTCMIDLLGRAGR 484
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
L++A + +P E + +W LLGA H N E+G KI E+E G YVL+ N
Sbjct: 485 LDEAVNLMKDMPFE-PDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSN 543
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
I A ++ D +++R ++ ER K PG S +
Sbjct: 544 IYASSGKWRDVDKMRLMMHERGVKKVPGFSWI 575
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 132/273 (48%), Gaps = 23/273 (8%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D LFDE+P ++ V++NVMI+ G + AR F+ P ++ VSW G++ Y R
Sbjct: 113 LADARALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYIRN 172
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R A LF TE I+ A+ Q + Q + +R ++
Sbjct: 173 GRIQEARDLFD-----SRTEWDAISWNALMAGYVQCSQIEEAQKMFNRMPQRDVVSW--- 224
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
N ++ +A+ G + A +LF+ + +++ +WT+++SG+A +GM +EA F+ M
Sbjct: 225 --NTMVSGHARRGDMAEARRLFDVAPI--RDVFTWTAVVSGYAQNGMLEEAKRVFDAMP- 279
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ N V++ +++ A ++EE + FD M C ++ + ++ +AG L+
Sbjct: 280 ---EKNAVSWNAMMAAYVQRRMMEEAKELFDAM--PCR---NVASWNTMLTGYAQAGMLD 331
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
+A + +P + + V W +L A S G E
Sbjct: 332 EARAIFDMMPQK--DAVSWAAMLAAYSQGGFSE 362
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/270 (20%), Positives = 119/270 (44%), Gaps = 29/270 (10%)
Query: 13 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFR 72
P+ ++ N IT ++ G + A LF M R+ ++ ++ GY R AL+ FR
Sbjct: 31 PDAEVIRRNKAITAHMRAGRVPDAERLFAAMSRRSTSTYNAMLGGYAANGRLTLALSFFR 90
Query: 73 RMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS---NCLIDT 129
+ P + + A+ + + + + + F+ + S N +I +
Sbjct: 91 SI-----PRPDSFSYNTLLHALGVSSSLADARAL--------FDEMPVKDSVSYNVMISS 137
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
+A G + A F D++ E K+ VSW +++ + +G +EA + F+ + + +
Sbjct: 138 HANHGLVSLARHYF-DLAPE-KDAVSWNGMLAAYIRNGRIQEARDLFDSRTEW----DAI 191
Query: 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
++ +++ +EE K F++M + D+ + ++ R G + +A ++
Sbjct: 192 SWNALMAGYVQCSQIEEAQKMFNRMPQR-----DVVSWNTMVSGHARRGDMAEARRLFDV 246
Query: 250 IPSEITNVVVWRTLLGACSFHGNVEMGERV 279
P I +V W ++ + +G +E +RV
Sbjct: 247 AP--IRDVFTWTAVVSGYAQNGMLEEAKRV 274
>gi|414883628|tpg|DAA59642.1| TPA: hypothetical protein ZEAMMB73_113196, partial [Zea mays]
Length = 635
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/328 (35%), Positives = 200/328 (60%), Gaps = 10/328 (3%)
Query: 7 KLFDELP-ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 65
K+FDELP R++VTWN ++ G V+ G + AR +F+ MP R+ VSW+ +I GY +
Sbjct: 188 KVFDELPIVRDVVTWNAVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPE 247
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
AL +F+ MVA + + +E I+ A Q G + + +H ++ G +++
Sbjct: 248 VALGVFKNMVA-QGVKANEAAIVTALSAAAQLGLLEQGKFVHEVVKRVGMT-MSVNLGAA 305
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
LID Y+KCG + +A ++F+ ++ R+++ +W S+I G A HG+G +AV+ FE+
Sbjct: 306 LIDMYSKCGSVAAAKEVFD--AMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFC 363
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
P +TF+ VLNACS GLV+EG ++F M E+ ++ +++HYGC++D+L RAG +++A +
Sbjct: 364 PTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVE 423
Query: 246 VASG--IPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
+ G IP + V+W T+L AC HG V++G V K++E++ + G YVL+ +I A
Sbjct: 424 LIEGMRIPPD---PVLWGTILSACKRHGLVDLGITVGNKLIELDPAHDGYYVLLASIYAK 480
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
++ + ++R+++ R K G SL+
Sbjct: 481 AKKWDEVRKVRKLMSNRGTSKSAGWSLM 508
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 86/196 (43%), Gaps = 34/196 (17%)
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER--------------- 150
+H K G A ++V N I Y CG + + K+F+++ + R
Sbjct: 154 VHALAVKAG-AAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGYVRA 212
Query: 151 ---------------KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
++ VSW+++I G+ G + A+ F+ M +K N ++ L
Sbjct: 213 GMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTAL 272
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+A + GL+E+G KF ++V+ + + LIDM + G + A++V +P
Sbjct: 273 SAAAQLGLLEQG-KFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRR-- 329
Query: 256 NVVVWRTLLGACSFHG 271
+V W +++ + HG
Sbjct: 330 DVFAWNSMICGLATHG 345
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 117/325 (36%), Positives = 192/325 (59%), Gaps = 3/325 (0%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD +PER+ V+WN+MI G +K G+++ A +F +MP +NVVSWT +I G +S
Sbjct: 144 QLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVE 203
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL+L M + E + I ++ A G + + +H Y G + + + L
Sbjct: 204 ALSLCYEMQNAGF-ELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRV-IGCAL 261
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
++ Y KCG + AL +F + +K++ WT++I GFA+HG G EA+E F RM++ ++P
Sbjct: 262 VNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRP 321
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N +TF +VL ACS+GGLVEEG + F M V P I+HYGC++D+LGR+GRL++A+++
Sbjct: 322 NSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKEL 381
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P + + V+W LL AC H + +G +V ++E++ + G Y+ + ILA +
Sbjct: 382 IKKMPMK-PSAVIWGALLKACWIHRDFLLGSQVGAHLVEVDSDHSGRYIQLATILAAEGK 440
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ +A +R + PG+S V
Sbjct: 441 WKEAAEVRLKMKSLGVPISPGKSSV 465
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 119/284 (41%), Gaps = 60/284 (21%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G+L YA+ +F + N W II Y+ + A +++M++ S
Sbjct: 36 GDLLYAQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNS-----YT 90
Query: 91 FPAIWQNGDVRNCQ---------LIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
FP + +R C+ +HG K GF + + N L+ YA CG I A +
Sbjct: 91 FPFL-----LRACRNLLAMGEALQVHGLVIKLGFGS-DVFALNALLHVYALCGEIHCARQ 144
Query: 142 LFEDI-----------------------------SVERKNLVSWTSIISGFAMHGMGKEA 172
LF++I + KN+VSWTS+ISG G EA
Sbjct: 145 LFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEA 204
Query: 173 VENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEG--LKFF--DKMVEECEVLPDIKHYG 228
+ MQ + + V S+L AC++ G +++G L F+ + V+ V+ G
Sbjct: 205 LSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVI------G 258
Query: 229 C-LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
C L++M + G +E+A V + +V +W ++ + HG
Sbjct: 259 CALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHG 302
>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Brachypodium distachyon]
Length = 635
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/325 (35%), Positives = 197/325 (60%), Gaps = 6/325 (1%)
Query: 8 LFDELPE-RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+FDELP R++VTWN ++ G V+ G + AR +FEEMP R+ VSW+ ++ GY + +
Sbjct: 187 VFDELPRVRDVVTWNAVLAGYVRAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGELDV 246
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL +FR MV + +E ++ A Q G + + + +H ++ G ++V L
Sbjct: 247 ALGVFRDMVE-KGVRVNEAAVVTALSAAAQMGLLEHGRFVHEVVQRTGM-PVSVNVGAAL 304
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+D ++KCGC+ A ++F+ + R+++ +W ++I G A HG+G++AVE F R L P
Sbjct: 305 VDMFSKCGCVAVAREVFD--GMPRRDVFAWNAMICGLASHGLGQDAVELFWRFLDEGLWP 362
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+TF+ VLNACS GLV EG ++F MV++ + P+++HYGC++D+LGRAG + +A ++
Sbjct: 363 TDITFVGVLNACSRCGLVAEGRRYFKLMVDKYRIEPEMEHYGCMVDLLGRAGLVSEAIEL 422
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
G+ + V+W T+L AC H V++G V K++E+E + G YVL+ +I A +
Sbjct: 423 IEGM-HIAPDPVLWGTVLSACKTHNLVDLGITVGNKLIELEPAHDGHYVLLASIYAKAKK 481
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ + +R+++ R K G SL+
Sbjct: 482 WDEVREVRKLMSSRGTGKSAGWSLM 506
>gi|357131531|ref|XP_003567390.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Brachypodium distachyon]
Length = 531
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 117/324 (36%), Positives = 190/324 (58%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FDE+P R+ +W+V+I G K G ++ AR LF++MP +N+V+WT +I+GY + R +
Sbjct: 201 VFDEMPTRDSSSWSVLIVGYCKRGSMQSARELFDKMPGKNLVTWTAMINGYAQCGRPKES 260
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
++LFR + A EP T++ V + Q G + Y +++ + V L+
Sbjct: 261 ISLFRELEAVG-IEPDAATMVGVISSASQIGSTALAGWVGNYVDRKRIER-NEKVLTALV 318
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D +AKCG + AL F +I E+ + +T++ISG A HG A++ FERM+ ++P+
Sbjct: 319 DMHAKCGNVEQALNCFREI--EQPDAYPYTALISGLATHGHSTLALQVFERMRAQAVRPD 376
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TF+ VL ACSH GLV+ GL +++ MV++ + HY C++DMLGRAGR+ +A +
Sbjct: 377 PITFVGVLTACSHAGLVDMGLDYWEAMVQDYGMDRRADHYACVVDMLGRAGRIVEAFDMV 436
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P + LL AC H NVE+ E V K+ E+E G+Y+L+ NI AG ++
Sbjct: 437 QTMPMG-PHPGALGALLSACKTHDNVEIAEIVANKLFELEPRNTGNYILLSNIYAGKEQW 495
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
+AER+R ++ + K PG + V
Sbjct: 496 EEAERIRSLMRTKLPFKQPGSTWV 519
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 114/273 (41%), Gaps = 46/273 (16%)
Query: 11 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALAL 70
+P + V++N ++ + + A SLF MP R VSW ++ Y
Sbjct: 142 SIPAPDAVSFNSLLCAHARLASVPAAESLFTSMPSRTQVSWNAMVVVYV----------- 190
Query: 71 FRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTY 130
GD + +L+ R +++ + LI Y
Sbjct: 191 -------------------------NAGDFASARLVFDEMPTRDSSSWSV-----LIVGY 220
Query: 131 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVT 190
K G + SA +LF+ + KNLV+WT++I+G+A G KE++ F ++ V ++P+ T
Sbjct: 221 CKRGSMQSARELFDKM--PGKNLVTWTAMINGYAQCGRPKESISLFRELEAVGIEPDAAT 278
Query: 191 FLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI 250
+ V+++ S G + V+ + + K L+DM + G +EQA I
Sbjct: 279 MVGVISSASQIGSTALA-GWVGNYVDRKRIERNEKVLTALVDMHAKCGNVEQALNCFREI 337
Query: 251 PSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
E + + L+ + HG+ + +V ++
Sbjct: 338 --EQPDAYPYTALISGLATHGHSTLALQVFERM 368
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 108/332 (32%), Positives = 198/332 (59%), Gaps = 9/332 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + + F++LP ++ +WN M+ G + G ++ AR F ++P +++VSW +++ Y +
Sbjct: 419 LDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKH 478
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR--GFNAFH 119
+ N + +F +M + +P + T++++ + + G + + ++ Y EK G +A
Sbjct: 479 DLFNESFEIFCKMQSSN-VKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAM- 536
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+ LID Y KCGC+ A ++F I KN+ WT++++ +AM G EA++ + M
Sbjct: 537 --LGTALIDMYGKCGCVEMAYEIFTQII--EKNVFVWTAMMAAYAMEGQALEAIDLYLEM 592
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
++ +KP+ VTF+++L ACSHGGLV+EG K+F+K+ ++P I HYGC++D+LGR G
Sbjct: 593 EERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGH 652
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
LE+ K +P E +V +W +L+ AC H NVE+ E+ ++++E++ G +VL+ N
Sbjct: 653 LEETVKFIERMPIE-PDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSN 711
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
I A R+ D ++R + E K PG +++
Sbjct: 712 IYADAGRWDDVSKVRTKLHETGVPKQPGFTMI 743
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 156/322 (48%), Gaps = 42/322 (13%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E ++V W +++G VK +++ AR LF++M R++VSWT ++ GY + +L LF++
Sbjct: 299 EVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQ 358
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF--NAFHIHVSNCLIDTYA 131
M E P E+ ++ V A D + +H + G + F + N L+D YA
Sbjct: 359 M-RFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGF---LGNALLDLYA 414
Query: 132 KCGCIFSALKLFEDI-----------------------------SVERKNLVSWTSIISG 162
KCG + AL+ FE + + K++VSW ++++
Sbjct: 415 KCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNA 474
Query: 163 FAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP 222
+ H + E+ E F +MQ +KP++ T +S+L++C+ G + G+ + + +E+ E+
Sbjct: 475 YVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGI-WVNVYIEKNEIGI 533
Query: 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRK 282
D LIDM G+ G +E A ++ + I + NV VW ++ A + G
Sbjct: 534 DAMLGTALIDMYGKCGCVEMAYEIFTQIIEK--NVFVWTAMMAAYAMEGQ---ALEAIDL 588
Query: 283 ILEM-ERGYGGDYVLMYNILAG 303
LEM ERG D+V +LA
Sbjct: 589 YLEMEERGVKPDHVTFIALLAA 610
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 136/298 (45%), Gaps = 29/298 (9%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
LK+ +LF+++ R++++WN MI+ V G A LF+EM +VS G++ M
Sbjct: 184 LKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEM----LVS--GVLPDEITM 237
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
A + + + + V +W G + NC L+ Y + + H
Sbjct: 238 VSLVSTCAKLKDL-----EMGKRLHLYIVDNKLWIRGSLLNC-LVDMYSKCGKMDEAHGL 291
Query: 122 VSNC------------LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 169
+S C L+ Y K I A +LF+ ++ ++LVSWT+++SG+ G
Sbjct: 292 LSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMN--ERSLVSWTTMMSGYVQGGYY 349
Query: 170 KEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC 229
E++E F++M+ + P+ V ++VL+AC H + G + + +L D
Sbjct: 350 CESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLG-RSVHAFIVTYGMLVDGFLGNA 408
Query: 230 LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME 287
L+D+ + G+L++A + +P + + W ++L G V+ KI E +
Sbjct: 409 LLDLYAKCGKLDEALRTFEQLPCK--SAASWNSMLDGFCRSGGVDKARDFFNKIPEKD 464
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 102/193 (52%), Gaps = 4/193 (2%)
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
A +N DV+ +HG K GF + ++N L+ Y+KCG + +LFE ++ ++
Sbjct: 142 ACCKNFDVKLGSEVHGRILKCGFGR-NKSLNNNLMGLYSKCGKLKEVCQLFEKMT--HRD 198
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
++SW ++IS + + GM +EA++ F+ M + P+ +T +S+++ C+ +E G +
Sbjct: 199 VISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHL 258
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
+V+ ++ CL+DM + G++++A + S +VV+W TL+
Sbjct: 259 YIVDN-KLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNK 317
Query: 273 VEMGERVTRKILE 285
++ ++ K+ E
Sbjct: 318 IDKARQLFDKMNE 330
>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Cucumis sativus]
Length = 609
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/301 (38%), Positives = 186/301 (61%), Gaps = 5/301 (1%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G L A +FE M R+ V+W +I+G+ N AL L+R M E EP T++++
Sbjct: 185 GSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREM-GSEGVEPDGFTMVSL 243
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A + G + + +H Y K G + H SN L+D Y+KCG A K+F+++ E
Sbjct: 244 LSACVELGALALGERVHMYMVKVGL-VQNQHASNALLDLYSKCGNFRDAQKVFDEM--EE 300
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
+++VSWTS+I G A++G+G EA++ F +++ LKP+ +TF+ VL ACSH G+++EG +
Sbjct: 301 RSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNY 360
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
F +M EE +LP I+H+GC++D+L RAG++ A +P N V+WRTLLGAC+ H
Sbjct: 361 FRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVP-PNAVIWRTLLGACTIH 419
Query: 271 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSL 330
G++E+GE +I +E+ + GD+VL+ N+ A R+ D + +R+++ + K PG SL
Sbjct: 420 GHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSL 479
Query: 331 V 331
V
Sbjct: 480 V 480
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 136/278 (48%), Gaps = 10/278 (3%)
Query: 12 LPERNLVTWNVMITGLVKW-GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALAL 70
+P +N +I LV + +A +F ++ N+ +W +I G+ + A+ L
Sbjct: 63 VPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVEL 122
Query: 71 FRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTY 130
F +M A P T +F A+ + DV + IH + GF++ V N L+ Y
Sbjct: 123 FSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRF-VQNSLVHMY 181
Query: 131 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVT 190
+ G + SA ++FE +S ++ V+W S+I+GFA++GM EA+ + M ++P+ T
Sbjct: 182 SVLGSLXSAYQVFEIMSY--RDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFT 239
Query: 191 FLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI 250
+S+L+AC G + G + MV + ++ + L+D+ + G A+KV +
Sbjct: 240 MVSLLSACVELGALALGERVHMYMV-KVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEM 298
Query: 251 PSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
E +VV W +L+ + +G +G + E+ER
Sbjct: 299 --EERSVVSWTSLIVGLAVNG---LGNEALKLFGELER 331
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 27/181 (14%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
+N N ++ K G A+ +F+EM R+VVSWT +I G N AL LF +
Sbjct: 270 QNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGEL 329
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF-----------HIHVS 123
+ +PSEIT + V A +C ++ GFN F I
Sbjct: 330 ER-QGLKPSEITFVGVLYA------CSHCGML-----DEGFNYFRRMKEEYGILPRIEHH 377
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKEAVENFERMQ 180
C++D + G + A ++ V N V W +++ +HG +G+ A +R++
Sbjct: 378 GCMVDLLCRAGKVGDAYDYIRNMPVP-PNAVIWRTLLGACTIHGHLELGEVARAEIQRLE 436
Query: 181 K 181
+
Sbjct: 437 Q 437
>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 540
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/334 (35%), Positives = 193/334 (57%), Gaps = 7/334 (2%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L + K+FDE+ ++VTWN M+ G ++ G L+ A LF +M RN+++W II G +
Sbjct: 176 LLSNARKVFDEMLVTDVVTWNSMVIGCLRNGGLDMAMDLFRKMNGRNIITWNSIITGLAQ 235
Query: 61 MNRSNGALALFRRM--VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF 118
+ +L LF M ++ + +P +ITI +V A Q G + + + +HGY + G
Sbjct: 236 GGSAKESLELFHEMQILSDDMVKPDKITIASVLSACAQLGAIDHGKWVHGYLRRNGIEC- 294
Query: 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER 178
+ + L++ Y KCG + A ++FE++ K+ +WT +IS FA+HG+G +A F
Sbjct: 295 DVVIGTALVNMYGKCGDVQKAFEIFEEMP--EKDASAWTVMISVFALHGLGWKAFNCFLE 352
Query: 179 MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
M+K +KPN VTF+ +L+AC+H GLVE+G FD M + P + HY C++D+L RA
Sbjct: 353 MEKAGVKPNHVTFVGLLSACAHSGLVEQGRWCFDVMKRVYSIEPQVYHYACMVDILSRAR 412
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMY 298
+++E + +P + +V VW LLG C HGNVE+GE+V ++++E YV
Sbjct: 413 LFDESEILIRSMPMK-PDVYVWGALLGGCQMHGNVELGEKVVHHLIDLEPHNHAFYVNWC 471
Query: 299 NILAGVWRYGDAERLRRVVDE-RNALKFPGRSLV 331
+I A + A+R+R ++ E R K PG S++
Sbjct: 472 DIYAKAGMFDAAKRIRNIMKEKRIEKKIPGCSMI 505
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 81/340 (23%), Positives = 153/340 (45%), Gaps = 46/340 (13%)
Query: 17 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG-----ALALF 71
L+T + + +G YA ++F + ++ ++ +I Y M + AL L+
Sbjct: 55 LITRLLYVCSFSYYGSFSYATNVFHMIKNPDLRAYNIMIRAYISMESGDDTHFCKALMLY 114
Query: 72 RRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYA 131
++M C+ P+ +T + Q D Q IH K GF ++V+N LI Y
Sbjct: 115 KQMF-CKDIVPNCLTFPFLLKGCTQWLDGATGQAIHTQVIKFGFLK-DVYVANSLISLYM 172
Query: 132 KCGCIFSALKLFEDISVER-----------------------------KNLVSWTSIISG 162
G + +A K+F+++ V +N+++W SII+G
Sbjct: 173 AGGLLSNARKVFDEMLVTDVVTWNSMVIGCLRNGGLDMAMDLFRKMNGRNIITWNSIITG 232
Query: 163 FAMHGMGKEAVENFERMQKV---VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECE 219
A G KE++E F MQ + ++KP+++T SVL+AC+ G ++ G K+ +
Sbjct: 233 LAQGGSAKESLELFHEMQILSDDMVKPDKITIASVLSACAQLGAIDHG-KWVHGYLRRNG 291
Query: 220 VLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERV 279
+ D+ L++M G+ G +++A ++ +P + + W ++ + HG +G +
Sbjct: 292 IECDVVIGTALVNMYGKCGDVQKAFEIFEEMPEK--DASAWTVMISVFALHG---LGWKA 346
Query: 280 TRKILEMER-GYGGDYVLMYNILAGVWRYGDAERLRRVVD 318
LEME+ G ++V +L+ G E+ R D
Sbjct: 347 FNCFLEMEKAGVKPNHVTFVGLLSACAHSGLVEQGRWCFD 386
>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
Length = 637
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/328 (35%), Positives = 200/328 (60%), Gaps = 10/328 (3%)
Query: 7 KLFDELP-ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 65
K+FDELP R++VTWN ++ G V+ G + AR +F+ MP R+ VSW+ +I GY +
Sbjct: 188 KVFDELPIVRDVVTWNAVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPE 247
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
AL +F+ MVA + + +E I+ A Q G + + +H ++ G +++
Sbjct: 248 VALGVFKNMVA-QGVKANEAAIVTALSAAAQLGLLEQGKFVHEVVKRVGMT-MSVNLGAA 305
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
LID Y+KCG + +A ++F+ ++ R+++ +W S+I G A HG+G +AV+ FE+
Sbjct: 306 LIDMYSKCGSVAAAKEVFD--AMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFC 363
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
P +TF+ VLNACS GLV+EG ++F M E+ ++ +++HYGC++D+L RAG +++A +
Sbjct: 364 PTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVE 423
Query: 246 VASG--IPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
+ G IP + V+W T+L AC HG V++G V K++E++ + G YVL+ +I A
Sbjct: 424 LIEGMRIPPD---PVLWGTILSACKRHGLVDLGITVGNKLIELDPAHDGYYVLLASIYAK 480
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
++ + ++R+++ R K G SL+
Sbjct: 481 AKKWDEVRKVRKLMSNRGTSKSAGWSLM 508
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 86/196 (43%), Gaps = 34/196 (17%)
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER--------------- 150
+H K G A ++V N I Y CG + + K+F+++ + R
Sbjct: 154 VHALAVKAG-AAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGYVRA 212
Query: 151 ---------------KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
++ VSW+++I G+ G + A+ F+ M +K N ++ L
Sbjct: 213 GMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTAL 272
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+A + GL+E+G KF ++V+ + + LIDM + G + A++V +P
Sbjct: 273 SAAAQLGLLEQG-KFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRR-- 329
Query: 256 NVVVWRTLLGACSFHG 271
+V W +++ + HG
Sbjct: 330 DVFAWNSMICGLATHG 345
>gi|220061995|gb|ACL79585.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
Length = 589
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 117/314 (37%), Positives = 180/314 (57%), Gaps = 12/314 (3%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVAC--- 77
++ K G+L AR +F+EM R+V +W ++ G + N ALALF R+
Sbjct: 152 TTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQE 211
Query: 78 --EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
EP+E+TI+AV A Q G +++ +H + +K G + ++ V N LID Y+KCG
Sbjct: 212 LPSREEPNEVTIVAVLSACAQIGLLKDGMYVHEFAKKFGLDR-NVRVCNSLIDMYSKCGS 270
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ AL +F I E + LVS+ + I +MHG G +A+ F+ M + +P+ VT+L+VL
Sbjct: 271 LSRALDVFHSIKPEDRTLVSYNAAIQAHSMHGHGGDALRLFDEMPTRI-EPDGVTYLAVL 329
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
C+H GLV++GL+ F+ M V P++KHYG ++D+LGRAGRL +A +P
Sbjct: 330 CGCNHSGLVDDGLRVFNSM----RVAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFP-A 384
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
++V+W+TLLGA HG VE+ E K+ E+ GDYVL+ N+ A R+ D R+R
Sbjct: 385 DIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRD 444
Query: 316 VVDERNALKFPGRS 329
+ + K PG S
Sbjct: 445 TMRSNDVRKVPGFS 458
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 109/233 (46%), Gaps = 13/233 (5%)
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
P +++ A + D +H + G A + + L+D+YAKCG + SA K
Sbjct: 111 PDALSLSFALKASARCSDAHTTVQLHALVLRLGVAA-DVRLLTTLLDSYAKCGDLASARK 169
Query: 142 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL------KPNRVTFLSVL 195
+F++++V +++ +W S+++G A A+ F R+ +PN VT ++VL
Sbjct: 170 VFDEMTV--RDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAVL 227
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+AC+ GL+++G+ + + ++ + +++ LIDM + G L +A V I E
Sbjct: 228 SACAQIGLLKDGM-YVHEFAKKFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDR 286
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
+V + + A S HG+ G R EM D V +L G G
Sbjct: 287 TLVSYNAAIQAHSMHGH---GGDALRLFDEMPTRIEPDGVTYLAVLCGCNHSG 336
>gi|225465641|ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Vitis vinifera]
Length = 539
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 117/325 (36%), Positives = 190/325 (58%), Gaps = 4/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FDE+ RN V+WN M+ G K G+L+ AR +FE MP R+VVSW+ +IDG +
Sbjct: 168 KVFDEMLIRNSVSWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKGGEYGV 227
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
ALA+F RM + +E+T+++V A G + + +H Y F + + L
Sbjct: 228 ALAIFERMRVVG-PKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTMR-FTLVLRTSL 285
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+D YAKCG I A+ +F + +++ +++ W +II G A HG+ E++E F+ MQ + + P
Sbjct: 286 MDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVHESLELFKEMQVLGIVP 345
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +T+L + +AC+HGGLV E FF + ++ V P +HY C++D+L RAG+L +A
Sbjct: 346 DEITYLCLFSACAHGGLVHEAWHFFKSLGKQGMV-PKSEHYACMVDVLSRAGQLAEAYDF 404
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ +P E T ++ LL C H ++ ERV RK++E+E + G Y+ + N+ AGV
Sbjct: 405 IAQMPMEPTASML-GALLNGCMNHRRFDLAERVGRKLIELEPDHDGRYIGLSNVYAGVKL 463
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ +A +R ++ R K PG S V
Sbjct: 464 WDNARMMREAMERRGVKKSPGFSFV 488
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 145/283 (51%), Gaps = 40/283 (14%)
Query: 25 TGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV---ACEYTE 81
+ + WG+++++ +F ++P + +W II G+++ N ++++F +M+ C
Sbjct: 54 SAISSWGDIDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVC---- 109
Query: 82 PSEITILAVFPAIWQNGDVR-----NCQ---------------LIHGYGE-------KRG 114
P +T + A+ + ++R +C+ LIH YG ++
Sbjct: 110 PDHLTYPFIAKAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKV 169
Query: 115 FNAFHIHVS---NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKE 171
F+ I S N ++D YAKCG + SA ++FE S+ +++VSW+S+I G G
Sbjct: 170 FDEMLIRNSVSWNAMLDGYAKCGDLDSARQVFE--SMPDRDVVSWSSMIDGCVKGGEYGV 227
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLI 231
A+ FERM+ V K N VT +SVL AC+H G +E+G MV+ + L+
Sbjct: 228 ALAIFERMRVVGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTMRFTLVLRTS-LM 286
Query: 232 DMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
DM + G +E+A V G+P + T+V++W T++G + HG V
Sbjct: 287 DMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVH 329
>gi|296085295|emb|CBI29027.3| unnamed protein product [Vitis vinifera]
Length = 384
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 117/325 (36%), Positives = 190/325 (58%), Gaps = 4/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FDE+ RN V+WN M+ G K G+L+ AR +FE MP R+VVSW+ +IDG +
Sbjct: 13 KVFDEMLIRNSVSWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKGGEYGV 72
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
ALA+F RM + +E+T+++V A G + + +H Y F + + L
Sbjct: 73 ALAIFERMRVVG-PKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTMR-FTLVLRTSL 130
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+D YAKCG I A+ +F + +++ +++ W +II G A HG+ E++E F+ MQ + + P
Sbjct: 131 MDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVHESLELFKEMQVLGIVP 190
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +T+L + +AC+HGGLV E FF + ++ V P +HY C++D+L RAG+L +A
Sbjct: 191 DEITYLCLFSACAHGGLVHEAWHFFKSLGKQGMV-PKSEHYACMVDVLSRAGQLAEAYDF 249
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ +P E T ++ LL C H ++ ERV RK++E+E + G Y+ + N+ AGV
Sbjct: 250 IAQMPMEPTASMLG-ALLNGCMNHRRFDLAERVGRKLIELEPDHDGRYIGLSNVYAGVKL 308
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ +A +R ++ R K PG S V
Sbjct: 309 WDNARMMREAMERRGVKKSPGFSFV 333
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 30/174 (17%)
Query: 130 YAKCGCIFSALKLFEDI-----------------------------SVERKNLVSWTSII 160
Y CG I SA K+F+++ S+ +++VSW+S+I
Sbjct: 2 YGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSMI 61
Query: 161 SGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEV 220
G G A+ FERM+ V K N VT +SVL AC+H G +E+G MV+
Sbjct: 62 DGCVKGGEYGVALAIFERMRVVGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTMR 121
Query: 221 LPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
+ L+DM + G +E+A V G+P + T+V++W T++G + HG V
Sbjct: 122 FTLVLRTS-LMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVH 174
>gi|242071929|ref|XP_002451241.1| hypothetical protein SORBIDRAFT_05g026370 [Sorghum bicolor]
gi|241937084|gb|EES10229.1| hypothetical protein SORBIDRAFT_05g026370 [Sorghum bicolor]
Length = 505
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 115/331 (34%), Positives = 192/331 (58%), Gaps = 10/331 (3%)
Query: 8 LFDELPERN--LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVS-----WTGIIDGYTR 60
LFD++P++N V +N +IT +K ++ AR LF+EM W II G R
Sbjct: 166 LFDDMPQKNKCTVAYNTLITACLKARDIRAARHLFDEMQRHRRSRRSVVSWNLIITGCAR 225
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
R + A+ F RMV P + T++AV PA + G+ + H Y +K G +
Sbjct: 226 SGRDDMAVQCFERMVREGEVAPDDGTLVAVLPACGKTGNAGAGRWAHEYAKKSGLLEGTV 285
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
HV+N ++D Y KCG + SA ++F ++ ++++VSW ++I+GF+++G G E ++ F++M
Sbjct: 286 HVANAVMDMYCKCGDVDSAREVF--MTTPQRSVVSWNAMITGFSLNGHGVEGIDLFQKMM 343
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ ++PN VTFL+VL C+H G V+ G + F MV E + P I+HYGC++D+ GR G L
Sbjct: 344 RHGVEPNAVTFLAVLGCCAHAGAVDIGREIFQSMVSEHGIEPAIEHYGCMVDLFGRCGLL 403
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+A + G+P + N +W LL AC H + E ++++ +E G+YVL+ N+
Sbjct: 404 EEAHALIQGMPMK-PNAAIWGALLSACRAHAGLGTAEVALKELINLEPWNSGNYVLLANL 462
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ +A +RR++ + K PG+S++
Sbjct: 463 YAETERWEEAGEVRRLMRRMSVNKAPGQSVM 493
>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 595
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 189/332 (56%), Gaps = 6/332 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYT 59
L ++LF+ +PER+ V+WN MI G + G + A F+ MP RNVVSW ++ +
Sbjct: 220 LDAANELFETIPERDAVSWNCMIDGCARVGNVSLAVKFFDRMPAAVRNVVSWNSVLALHA 279
Query: 60 RMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
R+ L LF +MV P+E T+++V A G + +H +
Sbjct: 280 RVKNYGECLMLFGKMVEGREAVPNEATLVSVLTACANLGKLSMGMWVHSFIRSNNIKP-D 338
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+ + CL+ YAKCG + A +F+++ V +++VSW S+I G+ +HG+G +A+E F M
Sbjct: 339 VLLLTCLLTMYAKCGAMDLAKGVFDEMPV--RSVVSWNSMIMGYGLHGIGDKALELFLEM 396
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+K +PN TF+SVL+AC+H G+V EG +FD M ++ P ++HYGC++D+L RAG
Sbjct: 397 EKAGQQPNDATFISVLSACTHAGMVMEGWWYFDLMQRVYKIEPKVEHYGCMVDLLARAGL 456
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
+E +E++ +P + +W LL CS H + E+GE V ++ +E+E G Y+L+ N
Sbjct: 457 VENSEELIRMVPVK-AGSAIWGALLSGCSNHLDSELGEIVAKRFIELEPQDIGPYILLSN 515
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ A R+ D E +R ++ E+ K SLV
Sbjct: 516 MYAAKGRWDDVEHVRLMIKEKGLQKEAASSLV 547
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 129/286 (45%), Gaps = 54/286 (18%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FDE +LV++N MI G VK GE+ AR +F EMP R+V+SW +I GY + + A
Sbjct: 164 VFDESCWLDLVSYNSMIDGYVKNGEIGAARKVFNEMPDRDVLSWNCLIAGYVGVGDLDAA 223
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
LF T P + W NC+I
Sbjct: 224 NELFE-------TIPERDAV------SW----------------------------NCMI 242
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV---- 183
D A+ G + A+K F+ + +N+VSW S++ A+H K E K+V
Sbjct: 243 DGCARVGNVSLAVKFFDRMPAAVRNVVSWNSVL---ALHARVKNYGECLMLFGKMVEGRE 299
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
PN T +SVL AC++ G + G+ + + + PD+ CL+ M + G ++ A
Sbjct: 300 AVPNEATLVSVLTACANLGKLSMGM-WVHSFIRSNNIKPDVLLLTCLLTMYAKCGAMDLA 358
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 289
+ V +P + +VV W +++ HG +G++ LEME+
Sbjct: 359 KGVFDEMP--VRSVVSWNSMIMGYGLHG---IGDKALELFLEMEKA 399
>gi|225428117|ref|XP_002278375.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial [Vitis vinifera]
Length = 681
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 115/324 (35%), Positives = 186/324 (57%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LF E+P + +TWN MI+G + G LE AR+LF +P +N+VSW +I GY GA
Sbjct: 357 LFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGA 416
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L+R+M+ + +P T+ +V + IH K I ++N LI
Sbjct: 417 TELYRQML-LQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVIP--DIPINNSLI 473
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
Y++CG I A +F+++ ++ K ++SW ++I G+A HG +A+E FE M+++ ++P
Sbjct: 474 TMYSRCGAIVEARTIFDEVKLQ-KEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPT 532
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TF+SVLNAC+H G V+EG F M E + P I+H+ L+D++GR G+LE+A +
Sbjct: 533 YITFISVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLI 592
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+ +P E + VW LLGAC H NVE+ ++++E YVL++N+ A V ++
Sbjct: 593 NSMPFE-PDKAVWGALLGACRVHNNVELARVAAEALMKLEPESSAPYVLLHNMYADVGQW 651
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
+A +R +++ N K PG S V
Sbjct: 652 DNATEMRMMMERNNIRKQPGYSWV 675
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 140/295 (47%), Gaps = 27/295 (9%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
++++G LFDE+PER+ V+WN MI+G + G ++ A LF+ M RNVVSW ++ G+ +
Sbjct: 146 WVEEGRHLFDEMPERDCVSWNTMISGYTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQ 205
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH- 119
A+ F RM E ++ A+ + QNG++ + I ++ +
Sbjct: 206 NGDVERAIEFFMRM-----PERDSASLSALVAGLIQNGELDEAKRILLTSRRQDDDKGDL 260
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVE----------RKNLVSWTSIISGFAMHGMG 169
+H N L+ Y + G + A +LF+ I +N+VSW S+I +
Sbjct: 261 VHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDI 320
Query: 170 KEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC 229
A F++M+ + + +++ ++++ +EE F +M PD +
Sbjct: 321 FSARVLFDQMK----ERDTISWNTMISGYVRMSDMEEAWMLFQEMPN-----PDTLTWNS 371
Query: 230 LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKIL 284
+I + G LE A + + IP + N+V W +++ +G+ + + R++L
Sbjct: 372 MISGFAQKGNLELARALFATIPQK--NLVSWNSMIAGYENNGDYKGATELYRQML 424
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 121/254 (47%), Gaps = 52/254 (20%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + LFD +P+RN+VTWN MITG V+ E+ AR LF+EMP R+VVSW +I GY
Sbjct: 83 INEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMPDRDVVSWNLMISGY--- 139
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
V+C+ E L + R+C
Sbjct: 140 -------------VSCQGRWVEEGRHL------FDEMPERDC------------------ 162
Query: 122 VS-NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
VS N +I Y + G + AL+LF+ S++ +N+VSW ++++GF +G + A+E F RM
Sbjct: 163 VSWNTMISGYTRSGRMDEALQLFD--SMQERNVVSWNAMVTGFLQNGDVERAIEFFMRM- 219
Query: 181 KVVLKPNR--VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH-YGCLIDMLGRA 237
P R + +++ G ++E + + + D+ H Y L+ G+
Sbjct: 220 -----PERDSASLSALVAGLIQNGELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQN 274
Query: 238 GRLEQAEKVASGIP 251
GR+++A ++ IP
Sbjct: 275 GRVDKARQLFDQIP 288
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 104/235 (44%), Gaps = 44/235 (18%)
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
+ ++ N I + G I A LF+ ++ ++N+V+W S+I+G+ +A + F
Sbjct: 64 SLDLYTPNKRISHLIRNGRINEARALFD--AMPQRNIVTWNSMITGYVRRREMAKARKLF 121
Query: 177 ERM-QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
+ M + V+ N +S +C G VEEG FD+M E D + +I
Sbjct: 122 DEMPDRDVVSWN--LMISGYVSC-QGRWVEEGRHLFDEMPER-----DCVSWNTMISGYT 173
Query: 236 RAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE--------MGERVT------- 280
R+GR+++A ++ + NVV W ++ +G+VE M ER +
Sbjct: 174 RSGRMDEALQLFDSMQER--NVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALV 231
Query: 281 ------------RKILEMERGYG---GDYVLMYNI-LAGVWRYGDAERLRRVVDE 319
++IL R GD V YNI LAG + G ++ R++ D+
Sbjct: 232 AGLIQNGELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQ 286
>gi|449452160|ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Cucumis sativus]
Length = 532
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/333 (36%), Positives = 189/333 (56%), Gaps = 8/333 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++ ++FDE+PE + V+W VMI G G+++ AR LF+ ++ W +I GY +
Sbjct: 156 MRSARQVFDEMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQN 215
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
N L +FR M E EP E I+ + A G + IH Y + G +
Sbjct: 216 NCFKEGLHMFRLMQLTE-VEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGL-PLTLR 273
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VS LID YAKCG + A LF ++S +R N V W ++ISG AM G G+ A++ F M+K
Sbjct: 274 VSTGLIDMYAKCGHLDLAKYLFNEMS-QRDN-VCWNAMISGMAMDGDGEGAIKLFMEMEK 331
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KP+ +TF++VL ACS+ G+V+EG++ +++M ++ P +HYGC+ID+L R GR E
Sbjct: 332 AGIKPDNITFIAVLAACSNSGMVDEGIRIWNRMSTVHKIEPKSEHYGCVIDLLSRVGRFE 391
Query: 242 QAEKVASGIP---SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMY 298
+AE V +P S V WR L AC HG + E ++ ++ER + G YVL+
Sbjct: 392 EAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQAEVAAERLFQLER-HSGAYVLLS 450
Query: 299 NILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
N+ A + ++ DA+R+R ++ + K PG S +
Sbjct: 451 NMYAALGKHEDAKRVRNMMKLKGVEKVPGCSSI 483
>gi|357164322|ref|XP_003580018.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Brachypodium distachyon]
Length = 593
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 114/316 (36%), Positives = 184/316 (58%), Gaps = 5/316 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
L+ N ++ VK +L+ AR +F+ + R+V+SWT +I G + + AL +F M
Sbjct: 245 KLIVGNAVLDMYVKCEKLDLARRVFDRLLVRDVISWTIMISGLVQCKLPSKALEVFNEMQ 304
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
+P ++ + V A G + + + +H Y E++G + +HV L+D YAKCGC
Sbjct: 305 KSR-VKPDKVVLSTVLSACTSLGALESGRWVHEYIERKGIE-WDVHVGTSLVDMYAKCGC 362
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ ++L +F + + KNL SW ++I+GFA+HG G+EA+E+F+RM L PN V+F+ VL
Sbjct: 363 LETSLSIFRKMPL--KNLSSWNALINGFALHGHGREALEHFDRMVASGLAPNEVSFIIVL 420
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
AC H GLV+EGL+ F+ M ++ P +HYG ++D+LGRAG + +A V +P
Sbjct: 421 GACCHSGLVQEGLQLFESMKNSYKLSPWEEHYGSVVDLLGRAGLIHEAYSVTKAMPMR-P 479
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
V W LL AC H V+ +++ R + E+E G Y L+ NI A R+ D +R+R
Sbjct: 480 AVFTWGALLSACQAHRQVDFSQQILRHVHELESSESGVYALLSNIYAVNHRWADVKRVRG 539
Query: 316 VVDERNALKFPGRSLV 331
++ E+ K PG S++
Sbjct: 540 LMSEKGLQKEPGSSVI 555
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 132/252 (52%), Gaps = 10/252 (3%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++T GE AR +F+EM R+VVSWT ++ + R R AL L +M
Sbjct: 152 NALVTLYGVCGECGDARRVFDEMASRDVVSWTALVSAFVRGGRFAEALVLVGQMDVV--- 208
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P+E T+ V A + G R + +HG+ +R + + V N ++D Y KC + A
Sbjct: 209 -PNEGTLACVLVACGRLGAARAGKAVHGWYLRRESD-LKLIVGNAVLDMYVKCEKLDLAR 266
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
++F+ + V ++++SWT +ISG + +A+E F MQK +KP++V +VL+AC+
Sbjct: 267 RVFDRLLV--RDVISWTIMISGLVQCKLPSKALEVFNEMQKSRVKPDKVVLSTVLSACTS 324
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
G +E G ++ + +E + D+ L+DM + G LE + + +P + N+ W
Sbjct: 325 LGALESG-RWVHEYIERKGIEWDVHVGTSLVDMYAKCGCLETSLSIFRKMP--LKNLSSW 381
Query: 261 RTLLGACSFHGN 272
L+ + HG+
Sbjct: 382 NALINGFALHGH 393
>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 190/336 (56%), Gaps = 10/336 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ KLFD +PER+LV++ M+T K G L AR LFE M ++VV W +IDGY +
Sbjct: 168 VASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQH 227
Query: 62 NRSNGALALFRRMVACEY------TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF 115
N AL FR+M+ P+EIT++AV + Q G + + +H Y E G
Sbjct: 228 GCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGI 287
Query: 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
++ V L+D Y KCG + A K+F+ +E K++V+W S+I G+ +HG EA++
Sbjct: 288 KV-NVRVGTALVDMYCKCGSLEDARKVFD--VMEGKDVVAWNSMIMGYGIHGFSDEALQL 344
Query: 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
F M + +KP+ +TF++VL AC+H GLV +G + FD M + + P ++HYGC++++LG
Sbjct: 345 FHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLG 404
Query: 236 RAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV 295
RAGR+++A + + E + V+W TLL AC H NV +GE + ++ G YV
Sbjct: 405 RAGRMQEAYDLVRSMEVE-PDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGLASSGTYV 463
Query: 296 LMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
L+ N+ A + ++R ++ K PG S +
Sbjct: 464 LLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSI 499
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 134/279 (48%), Gaps = 49/279 (17%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G L ++ +LF P NV WT II+ + + + AL+ + +M+ +P+ T+ ++
Sbjct: 69 GHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLT-HPIQPNAFTLSSL 127
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A + + +H + K G ++ H++VS L+D YA+ G + SA KLF+ ++
Sbjct: 128 LKAC----TLHPARAVHSHAIKFGLSS-HLYVSTGLVDAYARGGDVASAQKLFD--AMPE 180
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFE--RMQKVV------------------------- 183
++LVS+T++++ +A HGM EA FE M+ VV
Sbjct: 181 RSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKM 240
Query: 184 -----------LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLID 232
++PN +T ++VL++C G +E G K+ VE + +++ L+D
Sbjct: 241 MMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECG-KWVHSYVENNGIKVNVRVGTALVD 299
Query: 233 MLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
M + G LE A KV + E +VV W +++ HG
Sbjct: 300 MYCKCGSLEDARKVFDVM--EGKDVVAWNSMIMGYGIHG 336
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 75/197 (38%), Gaps = 41/197 (20%)
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 165
IH +RG + H ++ L +YA G + ++ LF N+ WT II+ A
Sbjct: 42 IHAALLRRGLH-HHPILNFKLQRSYASLGHLHHSVTLFH--RTPNPNVFLWTHIINAHAH 98
Query: 166 HGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC---------SH---------------- 200
+ A+ + +M ++PN T S+L AC SH
Sbjct: 99 FDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACTLHPARAVHSHAIKFGLSSHLYVSTGL 158
Query: 201 ------GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
GG V K FD M E V Y ++ + G L +A + G+ +
Sbjct: 159 VDAYARGGDVASAQKLFDAMPERSLV-----SYTAMLTCYAKHGMLPEARVLFEGM--GM 211
Query: 255 TNVVVWRTLLGACSFHG 271
+VV W ++ + HG
Sbjct: 212 KDVVCWNVMIDGYAQHG 228
>gi|242042383|ref|XP_002468586.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
gi|241922440|gb|EER95584.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
Length = 581
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 190/316 (60%), Gaps = 5/316 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
++V+W M+ GLVK G ++ AR LF+ MP RN+VSW ++ GY + R AL +F M
Sbjct: 170 DVVSWTTMVGGLVKLGRVDDARELFDGMPERNLVSWNAMMSGYVKTGRFLDALEVFDEMR 229
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
A + + A G + + +H + E+ G ++ ++D Y KCGC
Sbjct: 230 A-RGVDGNAFVAATAVVACTGAGALARGREVHRWVERSGIE-MDDKLATAVVDMYCKCGC 287
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ A ++FE ++ + L SW +I GFA+HG G++A+ F M++ + P+ VT ++VL
Sbjct: 288 VEEAWRVFE--ALPARGLTSWNCMIGGFAVHGRGEDALNLFGLMEREGVAPDDVTLVNVL 345
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
AC+H G+V EG +F+ + + ++P ++HYGC++D+ GRAG+LE+A+KV +P E
Sbjct: 346 TACAHAGMVSEGRHYFNYISQRYGIVPKMEHYGCMVDLYGRAGQLEEAKKVIQDMPME-P 404
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
+V V L GA HG+V++GE + +++E++ G YVL+ N+LA R+ D R+RR
Sbjct: 405 DVGVLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDVARVRR 464
Query: 316 VVDERNALKFPGRSLV 331
++DERN K GRS++
Sbjct: 465 LMDERNVSKEAGRSVI 480
>gi|413920230|gb|AFW60162.1| hypothetical protein ZEAMMB73_962137 [Zea mays]
Length = 516
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 196/337 (58%), Gaps = 10/337 (2%)
Query: 2 LKDGSKLFDELPERN--LVTWNVMITGLVKWGELEYARSLFEEMPC-----RNVVSWTGI 54
L LFD++P++N V +N +IT ++ ++ AR LF+EM R+VVSW +
Sbjct: 177 LPQARVLFDDMPQKNKCTVAYNTLITACLRVRDIRAARHLFDEMQWHRRSRRSVVSWNLM 236
Query: 55 IDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG 114
I G R R + A++ F RM+ P + T++AV PA + G+VR + H Y K G
Sbjct: 237 IAGCARCGRDDMAVSCFERMIREGEVAPDDGTLVAVLPACGRTGNVRAGRWAHEYARKSG 296
Query: 115 FNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVE 174
+HV+N L+D Y K G + SA ++F ++ +++VSW ++I+GF+++G G E ++
Sbjct: 297 LLDGTVHVANALMDMYCKSGDVNSAREVF--MTTRPRSVVSWNTLIAGFSLNGRGVEGID 354
Query: 175 NFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDML 234
F+ M++ ++PN VTFL+VL C+H G V+ G + F M+ E I+HYGC++D+
Sbjct: 355 LFQEMRRQGMEPNAVTFLAVLGCCAHAGAVDIGREIFRSMLSEHGTEAAIEHYGCMVDLF 414
Query: 235 GRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY 294
GR+G LE+A + G+P + N +W LL AC H + + E ++++ +E G+Y
Sbjct: 415 GRSGLLEEAHVLIQGMPMK-PNAAIWGALLSACRAHAGLGLAEVALKELINLEPWNSGNY 473
Query: 295 VLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
VL+ N+ R+ +A +RR++ + K PG+S +
Sbjct: 474 VLLANLYVETERWDEAGEVRRLMRRMSVNKAPGQSFM 510
>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 609
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 190/311 (61%), Gaps = 5/311 (1%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ +G E A +FE M R+ V+W +I+G+ N AL L+R M E
Sbjct: 175 NSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREM-GSEGV 233
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
EP T++++ A + G + + +H Y K G + H SN L+D Y+KCG A
Sbjct: 234 EPDGFTMVSLLSACVELGALALGERVHMYMVKVGL-VQNQHASNALLDLYSKCGNFRDAQ 292
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
K+F+++ E +++VSWTS+I G A++G+G EA++ F +++ LKP+ +TF+ VL ACSH
Sbjct: 293 KVFDEM--EERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSH 350
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
G+++EG +F +M EE +LP I+H+GC++D+L RAG++ A +P N V+W
Sbjct: 351 CGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVP-PNAVIW 409
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320
RTLLGAC+ HG++E+GE +I +E+ + GD+VL+ N+ A R+ D + +R+++ +
Sbjct: 410 RTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMK 469
Query: 321 NALKFPGRSLV 331
K PG SLV
Sbjct: 470 GVKKTPGYSLV 480
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 135/278 (48%), Gaps = 10/278 (3%)
Query: 12 LPERNLVTWNVMITGLVKW-GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALAL 70
+P +N +I LV + +A +F ++ N+ +W +I G+ + A+ L
Sbjct: 63 VPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVEL 122
Query: 71 FRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTY 130
F +M A P T +F A+ + DV + IH + GF++ V N L+ Y
Sbjct: 123 FSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRF-VQNSLVHMY 181
Query: 131 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVT 190
+ G SA ++FE +S ++ V+W S+I+GFA++GM EA+ + M ++P+ T
Sbjct: 182 SVFGFAESAYQVFEIMSY--RDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFT 239
Query: 191 FLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI 250
+S+L+AC G + G + MV + ++ + L+D+ + G A+KV +
Sbjct: 240 MVSLLSACVELGALALGERVHMYMV-KVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEM 298
Query: 251 PSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
E +VV W +L+ + +G +G + E+ER
Sbjct: 299 --EERSVVSWTSLIVGLAVNG---LGNEALKLFGELER 331
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 75/187 (40%), Gaps = 44/187 (23%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV----VSWTGIIDG 57
+D K+FDE+ ER++V+W +I GL G A LF E+ + + +++ G++
Sbjct: 288 FRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYA 347
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
+ + FRRM EY + P I +G
Sbjct: 348 CSHCGMLDEGFNYFRRMKE-EY---------GILPRIEHHG------------------- 378
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKEAVE 174
C++D + G + A ++ V N V W +++ +HG +G+ A
Sbjct: 379 -------CMVDLLCRAGKVGDAYDYIRNMPVP-PNAVIWRTLLGACTIHGHLELGEVARA 430
Query: 175 NFERMQK 181
+R+++
Sbjct: 431 EIQRLEQ 437
>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 116/303 (38%), Positives = 181/303 (59%), Gaps = 5/303 (1%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFR--RMVACEYTEPSEITIL 88
G ++ AR+LF MP RNV+SW+ +I+GY R + ALALFR +M+ P+E T+
Sbjct: 113 GLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMS 172
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
V A + G + + + H Y +K G + + LID YAKCG + A +F ++
Sbjct: 173 GVLAACGRLGALEHGKWAHAYIDKCGM-PVDVVLGTALIDMYAKCGSVEKATWVFSNLG- 230
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
K++++W+++ISG AMHG+ +E V F +M ++PN VTFL+V AC HGGLV EG
Sbjct: 231 PNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGK 290
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
+ +M E+ ++P I+HYGC++D+ GRAGR+++A V +P E +V+VW LL
Sbjct: 291 DYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPME-PDVLVWGALLSGSR 349
Query: 269 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGR 328
HG++E E +K++E+E G YVL+ N+ A R+ D +R +++ K PG
Sbjct: 350 MHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGC 409
Query: 329 SLV 331
SL+
Sbjct: 410 SLI 412
>gi|297824945|ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297326194|gb|EFH56614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 599
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 111/323 (34%), Positives = 189/323 (58%), Gaps = 4/323 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++ + FDE+ +++ W +I+G K G++E A LF EMP +N VSWT +I GY R
Sbjct: 230 MESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQ 289
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ AL LFR+M+A +P + T + A +R+ + IHGY + I
Sbjct: 290 GSGDLALDLFRKMIAMR-VKPEQFTFSSCLCASASIASLRHGKQIHGYMIRTNVRPNAI- 347
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V++ LID Y+K G + ++ ++F I ++++ V W ++IS A HG+G +A++ + M K
Sbjct: 348 VTSSLIDMYSKSGSLEASERVFR-ICYDKQDCVLWNTMISALAQHGLGHKALQMLDDMIK 406
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ PNR T + +LNACSH GLVEEG+++F+ M + ++PD +HY CLID+LGRAG +
Sbjct: 407 FRVHPNRTTLVVILNACSHSGLVEEGVRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFK 466
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+ +P E + +W +LG C HGN E+G++ ++++++ Y+L+ +I
Sbjct: 467 ELMSKIEEMPFE-PDKHIWNAILGVCRIHGNEELGKKAAEELIKLDPESSAPYILLSSIY 525
Query: 302 AGVWRYGDAERLRRVVDERNALK 324
A ++ E+LR ++ +R K
Sbjct: 526 ADHGKWELVEKLRGIMKKRRVNK 548
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 148/297 (49%), Gaps = 33/297 (11%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
D K+FD++ RNL +WN M++G VK G L AR +F+ MP R+VVSW ++ GY +
Sbjct: 100 DACKVFDQMHLRNLYSWNNMVSGFVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGN 159
Query: 64 SNGALALFRR----------------MVACEYTEPSEITILA---VFPAIWQNGDVRNCQ 104
+ AL F+ + AC + ++ A V A + + V +C
Sbjct: 160 LHEALWFFKELRRSGIKFNEFSFAGLLTACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCS 219
Query: 105 LIHGYGE-------KRGFNAF---HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 154
+I Y + KR F+ IH+ LI YAK G + +A KLF ++ KN V
Sbjct: 220 IIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAADKLFREMP--EKNPV 277
Query: 155 SWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKM 214
SWT++I+G+ G G A++ F +M + +KP + TF S L A + + G + M
Sbjct: 278 SWTALIAGYVRQGSGDLALDLFRKMIAMRVKPEQFTFSSCLCASASIASLRHGKQIHGYM 337
Query: 215 VEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ V P+ LIDM ++G LE +E+V I + + V+W T++ A + HG
Sbjct: 338 I-RTNVRPNAIVTSSLIDMYSKSGSLEASERVFR-ICYDKQDCVLWNTMISALAQHG 392
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 102/233 (43%), Gaps = 57/233 (24%)
Query: 96 QNGDVRNCQL---IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI------ 146
Q GD ++ + IH + + GF + +SN LI Y KCG A K+F+ +
Sbjct: 55 QCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLY 114
Query: 147 -----------------------SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
S+ +++VSW +++ G+A G EA+ F+ +++
Sbjct: 115 SWNNMVSGFVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELRRSG 174
Query: 184 LKPNRVTFLSVLNAC-----------SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLID 232
+K N +F +L AC +HG ++ G F +V C + ID
Sbjct: 175 IKFNEFSFAGLLTACVKSRQLQLNQQAHGQVLVAG--FLSNVVLSCSI----------ID 222
Query: 233 MLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
+ G++E A++ + + ++ +W TL+ + G++E +++ R++ E
Sbjct: 223 AYAKCGQMESAKRCFDEMT--VKDIHIWTTLISGYAKLGDMEAADKLFREMPE 273
>gi|357116863|ref|XP_003560196.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 528
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 127/328 (38%), Positives = 191/328 (58%), Gaps = 8/328 (2%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM-PCRNVVSWTGIIDGYTRMNRSN 65
++ D ++V N +I K G+ AR F M P +NVVSW +I R +
Sbjct: 179 RVLDAGVALDVVACNALIDMYAKCGDAAAARRCFRRMLPAKNVVSWNTMIAACARSGDTR 238
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
AL+ FR M P + T +AV A G + + +H Y R A + V N
Sbjct: 239 EALSWFREMQRSGCVRPDDATFVAVLGACADLGALDAGRWVHAYMMGRHTKA--VVVGNA 296
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
L+D YAKCG + A ++F+ ++ R+++ ++TS+ISG AMHG G+EA+ M++ ++
Sbjct: 297 LLDMYAKCGAVDGAKEVFD--AMPRRDVYTYTSMISGLAMHGRGQEALALLADMRRAGVR 354
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN VTFL VL+AC H GLVEEGL F+ + E V P I+HYGC++DMLGRAGRL++AE+
Sbjct: 355 PNAVTFLGVLSACCHAGLVEEGLLHFNAIPESLGVAPGIEHYGCVVDMLGRAGRLDEAEE 414
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY--GGDYVLMYNILAG 303
+ + +P+ + ++W +LL AC HG+V ERV R++ +++ GDYVLM N+ A
Sbjct: 415 LVARMPAR-PDALIWGSLLSACRAHGHVARAERVMRRMADVDGDLADAGDYVLMSNMYAS 473
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
R+G A +LR+ + K PG SL+
Sbjct: 474 KGRHGKAVQLRKQMRRGRMDKVPGCSLI 501
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 121/264 (45%), Gaps = 21/264 (7%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G+ AR+LFE +VVSWT ++ G+TR+ A ALF M +
Sbjct: 104 GQGAVARALFER-GAPDVVSWTAMVTGHTRLGLFEEAAALFLAMADGVAVDAVAAAAAFA 162
Query: 91 FPAIWQN-GDVRNCQLIHGYGEKRGFN---AFHIHVSNCLIDTYAKCGCIFSALKLFEDI 146
A + G R +R + A + N LID YAKCG +A + F +
Sbjct: 163 ACAGAGDLGLARETH-------RRVLDAGVALDVVACNALIDMYAKCGDAAAARRCFRRM 215
Query: 147 SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV-VLKPNRVTFLSVLNACSHGGLVE 205
+ KN+VSW ++I+ A G +EA+ F MQ+ ++P+ TF++VL AC+ G ++
Sbjct: 216 -LPAKNVVSWNTMIAACARSGDTREALSWFREMQRSGCVRPDDATFVAVLGACADLGALD 274
Query: 206 EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
G M+ + + L+DM + G ++ A++V +P +V + +++
Sbjct: 275 AGRWVHAYMMGRHTKAVVVGN--ALLDMYAKCGAVDGAKEVFDAMPRR--DVYTYTSMIS 330
Query: 266 ACSFHGNVEMGERVTRKILEMERG 289
+ HG G+ + +M R
Sbjct: 331 GLAMHGR---GQEALALLADMRRA 351
>gi|255540655|ref|XP_002511392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550507|gb|EEF51994.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 441
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 191/327 (58%), Gaps = 7/327 (2%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR-NVVSWTGIIDGYTRM-NRS 64
KLFDE+P+RN+V WN MI+ + A +F+ M NV ++ +I G + + + S
Sbjct: 119 KLFDEIPQRNVVVWNAMISLYTHSNRVRDALDMFDAMEIEPNVSTFNALIYGLSGVKDGS 178
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
A+A + +M +P+ IT+LA+ PA + + IHGY + + H + +
Sbjct: 179 IKAIAFYWKMRQLG-LKPNLITLLALLPACVGIAALNLIREIHGYSIRNDIDR-HPQLGS 236
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
L+D Y +CGC+ +A +F ++ +++V+W+S+IS +A+HG K A+E F +M+ +
Sbjct: 237 GLLDAYGRCGCLINASNVF--CGMKERDVVAWSSLISAYALHGEAKNALEIFRQMELAKV 294
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
+P+ +TFL+VL ACSH GL +E L +F KM E + HY CL+D+L RAGRL +A
Sbjct: 295 QPDDITFLAVLKACSHAGLADEALDYFTKMQEGYRLQAVSDHYSCLVDVLSRAGRLYEAY 354
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
KV +P ++T W LLGAC +G +E+ E V R + E+E +YVL+ I A V
Sbjct: 355 KVIQEMPVKVT-AKAWGALLGACRTYGEIELAEIVGRALFEIEPDNPANYVLLARIYASV 413
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
RY +A+R+RR + ER PG S V
Sbjct: 414 GRYDEAQRIRREMKERGVKVSPGSSWV 440
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 123/279 (44%), Gaps = 59/279 (21%)
Query: 48 VVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNC-QL- 105
++S+T + + + AL LF M T + VFP + ++ C QL
Sbjct: 27 LLSFTKQLTSHVNRGLHHDALTLFYHM----QTSLALSLDPYVFPLVLKSCSAVLCPQLG 82
Query: 106 --IHGYGEKRGF--NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 161
+H + K GF N F V++ L+D Y KC CIFSA KLF++I ++N+V W ++IS
Sbjct: 83 TSVHAHIVKMGFLSNPF---VASALVDMYGKCACIFSARKLFDEI--PQRNVVVWNAMIS 137
Query: 162 GFAMHGMGKEAVENFE---------------------------------RMQKVVLKPNR 188
+ ++A++ F+ +M+++ LKPN
Sbjct: 138 LYTHSNRVRDALDMFDAMEIEPNVSTFNALIYGLSGVKDGSIKAIAFYWKMRQLGLKPNL 197
Query: 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY----GCLIDMLGRAGRLEQAE 244
+T L++L AC G+ L + + + DI + L+D GR G L A
Sbjct: 198 ITLLALLPACV--GIAALNLI---REIHGYSIRNDIDRHPQLGSGLLDAYGRCGCLINAS 252
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
V G+ +VV W +L+ A + HG + + R++
Sbjct: 253 NVFCGMKER--DVVAWSSLISAYALHGEAKNALEIFRQM 289
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 187/330 (56%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ +FD++ ++++V+W M+ G +E A +F MP +NVVSW II +
Sbjct: 289 LQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQE 348
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ A+ LF RM P + T++++ GD+ + H Y +
Sbjct: 349 GQYTEAVELFHRMCI-SGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITV-SVT 406
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N LID YAKCG + +A+ +F + KN+VSW II A+HG G+EA+E F+ MQ
Sbjct: 407 LCNSLIDMYAKCGALQTAIDIF--FGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQA 464
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
L P+ +TF +L+ACSH GLV+ G +FD M+ + P ++HY C++D+LGR G L
Sbjct: 465 SGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLG 524
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + +P + +VVVW LLGAC +GN+E+ +++ +++LE+ R G YVL+ N+
Sbjct: 525 EAMTLIQKMPVK-PDVVVWGALLGACRIYGNLEIAKQIMKQLLELGRFNSGLYVLLSNMY 583
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ R+ D +++R+++D+ K S +
Sbjct: 584 SESQRWDDMKKIRKIMDDSGIKKCRAISFI 613
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 134/269 (49%), Gaps = 17/269 (6%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
+VT +++ V+ G+L YA LF+++P N + +I GY+ N +L LFR+MV
Sbjct: 70 QVVTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMV 129
Query: 76 AC-----EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTY 130
+ ++T P + A P W+ ++H K G H V N ++ Y
Sbjct: 130 SAGPMPNQFTFPFVLKACAAKPFYWE------AVIVHAQAIKLGMGP-HACVQNAILTAY 182
Query: 131 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVT 190
C I SA ++F+DIS + +VSW S+I+G++ G EA+ F+ M ++ ++ + T
Sbjct: 183 VACRLILSARQVFDDIS--DRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFT 240
Query: 191 FLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI 250
+S+L+A S ++ G +F + V D LIDM + G L+ A+ V +
Sbjct: 241 LVSLLSASSKHCNLDLG-RFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQM 299
Query: 251 PSEITNVVVWRTLLGACSFHGNVEMGERV 279
+ +VV W +++ A + G VE ++
Sbjct: 300 LDK--DVVSWTSMVNAYANQGLVENAVQI 326
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 142/326 (43%), Gaps = 37/326 (11%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FD++ +R +V+WN MI G K G + A LF+EM V + + + +
Sbjct: 193 QVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHC 252
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
L L R + + V + + V N LI Y K G F HV + +
Sbjct: 253 NLDLGRF-----------VHLYIVITGVEIDSIVTN-ALIDMYA-KCGHLQFAKHVFDQM 299
Query: 127 ID-----------TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
+D YA G + +A+++F + V KN+VSW SII G EAVE
Sbjct: 300 LDKDVVSWTSMVNAYANQGLVENAVQIFNHMPV--KNVVSWNSIICCLVQEGQYTEAVEL 357
Query: 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC--LIDM 233
F RM + P+ T +S+L+ CS+ G + G + + C+ + + C LIDM
Sbjct: 358 FHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYI---CDNIITVSVTLCNSLIDM 414
Query: 234 LGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME-RGYGG 292
+ G L+ A + G+P + NVV W ++GA + HG GE M+ G
Sbjct: 415 YAKCGALQTAIDIFFGMPEK--NVVSWNVIIGALALHG---FGEEAIEMFKSMQASGLYP 469
Query: 293 DYVLMYNILAGVWRYGDAERLRRVVD 318
D + +L+ G + R D
Sbjct: 470 DEITFTGLLSACSHSGLVDMGRYYFD 495
>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 684
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 189/331 (57%), Gaps = 5/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D K+F+++ ER++ +W ++ G K GE++ A LF MP RN VSW +I G+
Sbjct: 229 MEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGC 288
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R AL F M+ + P+E ++ V A G + IH Y +K G +
Sbjct: 289 GRYPEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSS-N 347
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+S LID YAKCG I A ++F I +++++S+TS+ISG + HG+GK+A+ F +M
Sbjct: 348 ISTALIDMYAKCGRIDCASRVFNGIC--KRDVLSFTSMISGLSYHGLGKDALRVFYQMLD 405
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ PN +T L VLN CSH GLVEEG M + P I+HYGC ID+LGRAG LE
Sbjct: 406 ENVMPNEITILGVLNGCSHSGLVEEGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLE 465
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERG-YGGDYVLMYNI 300
+A +V +P E ++V+WR LL A H NV +GE++ I +++ + G VL+ N+
Sbjct: 466 RALEVVKTMPME-PDIVIWRALLSASRIHHNVNLGEQIISHIGQLKSSDHNGGEVLLSNL 524
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + R+ +R+++ +R + PG S +
Sbjct: 525 YASLGRWERVTEMRKLMVDRRSESSPGCSWI 555
>gi|356533546|ref|XP_003535324.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Glycine max]
Length = 483
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 117/328 (35%), Positives = 188/328 (57%), Gaps = 4/328 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ D SK+FDE+ + ++V WN+MI G K G+LE +F +M R VVSW ++ +
Sbjct: 157 MGDASKVFDEMRDPDVVVWNLMIRGFCKMGDLETGMKVFGQMKERTVVSWNLMMSCLAKN 216
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
N+ AL LF M+ + EP + +++ V P + G V + IH Y +GF I+
Sbjct: 217 NKEEKALELFNEMLEQGF-EPDDASLVTVLPVCARLGAVDIGEWIHSYANSKGFLQDTIN 275
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N L+D Y KCG + +A +F D++ KN+VSW ++ISG A +G G+ V FE M
Sbjct: 276 VGNSLVDFYCKCGNLQAAWSIFNDMA--SKNVVSWNAMISGLAYNGEGEVGVNLFEEMVH 333
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+PN TF+ VL C+H GLV+ G F M + +V P ++HYGC++D+LGR G +
Sbjct: 334 GGFEPNDSTFVGVLACCAHVGLVDRGRDLFASMSVKFKVSPKLEHYGCVVDLLGRCGHVR 393
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + + +P + T +W LL AC +G+ E+ E ++++ +E G+YVL+ N+
Sbjct: 394 EARDLITSMPLKPT-AALWGALLSACRTYGDREIAENAAKELVRLEPWNSGNYVLLSNVY 452
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRS 329
A R+ + E++R ++ K PG+S
Sbjct: 453 AEEGRWDEVEKVRVLMRGGGVKKVPGQS 480
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/277 (20%), Positives = 116/277 (41%), Gaps = 41/277 (14%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
+ YA LF N++ + II ++ + + + F M P E T+ +F
Sbjct: 56 VPYATRLFAHTHNPNILLFNAIIKAHSLHPPFHASFSFFSLM-KTRAISPDEYTLAPLFK 114
Query: 93 AIWQNGDVRNCQL---IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI--- 146
+ ++R L +H + + GF H V ++ YA C + A K+F+++
Sbjct: 115 SA---SNLRYYVLGGCVHAHVVRLGFTR-HASVRVAALEVYASCERMGDASKVFDEMRDP 170
Query: 147 --------------------------SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
++ + +VSW ++S A + ++A+E F M
Sbjct: 171 DVVVWNLMIRGFCKMGDLETGMKVFGQMKERTVVSWNLMMSCLAKNNKEEKALELFNEML 230
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG-CLIDMLGRAGR 239
+ +P+ + ++VL C+ G V+ G ++ L D + G L+D + G
Sbjct: 231 EQGFEPDDASLVTVLPVCARLGAVDIG-EWIHSYANSKGFLQDTINVGNSLVDFYCKCGN 289
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMG 276
L+ A + + + S+ NVV W ++ +++G E+G
Sbjct: 290 LQAAWSIFNDMASK--NVVSWNAMISGLAYNGEGEVG 324
>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 545
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 114/327 (34%), Positives = 190/327 (58%), Gaps = 13/327 (3%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
+ + LFDE+ ERN+ +WN MI+G G ++ A+ +F+ MP R+VVSW ++ Y
Sbjct: 221 LVDEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAH 280
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+ N L +F +M+ +P T+++V A G + + +H Y +K G
Sbjct: 281 VGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIE-IEG 339
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
++ L+D Y+KCG I AL++F S ++++ +W SIIS ++HG+GK+A+E F M
Sbjct: 340 FLATALVDMYSKCGKIDKALEVFRATS--KRDVSTWNSIISDLSVHGLGKDALEIFSEMV 397
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
KPN +TF+ VL+AC+H G++++ K F+ M V P I+HYGC++D+LGR G++
Sbjct: 398 YEGFKPNGITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKI 457
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+AE++ + IP++ ++++ +LLGAC G +E ER+ ++LE+ Y M N+
Sbjct: 458 EEAEELVNEIPADEASILL-ESLLGACKRFGQLEQAERIANRLLELNLRDSSGYAQMSNL 516
Query: 301 LA--GVW-------RYGDAERLRRVVD 318
A G W R AER+ R +D
Sbjct: 517 YASDGRWEKVIDGRRNMRAERVNRSLD 543
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/353 (21%), Positives = 134/353 (37%), Gaps = 80/353 (22%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
+ YA S+ + N + +I Y + AL +FR M+ P + + V
Sbjct: 90 VSYAHSILNRIGSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVF-PDKYSFTFVLK 148
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV---- 148
A + IHG K G + V N L++ Y + G A K+ + + V
Sbjct: 149 ACAAFCGFEEGRQIHGLFIKSGL-VTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAV 207
Query: 149 -------------------------ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
E +N+ SW +ISG+A G+ KEA E F+ M
Sbjct: 208 SWNSLLSAYLEKGLVDEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSM---- 263
Query: 184 LKPNR--VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD------------------ 223
P R V++ +++ A +H G E L+ F+KM+++ PD
Sbjct: 264 --PVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLS 321
Query: 224 --------IKHYG---------CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
I +G L+DM + G++++A +V +V W +++
Sbjct: 322 QGEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRATSKR--DVSTWNSIISD 379
Query: 267 CSFHGNVEMGERVTRKILEM-ERGYGGDYVLMYNILAGVWRYGDAERLRRVVD 318
S HG +G+ EM G+ + + +L+ G ++ R++ +
Sbjct: 380 LSVHG---LGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGMLDQARKLFE 429
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 120/312 (38%), Positives = 189/312 (60%), Gaps = 7/312 (2%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ +K +L A +F+EMP +NVV+W +I G R AL FR M+ +
Sbjct: 252 NALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFR-MMQDKGV 310
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+P E+T++ V + G + + +H Y + A V N L+D YAKCG I A
Sbjct: 311 KPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKF-VGNALLDMYAKCGSIDEAF 369
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
++FE S++R+++ S+T++I G A+HG A + F M +V ++PN VTFL +L ACSH
Sbjct: 370 RVFE--SMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSH 427
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI-TNVVV 259
GGLV EG K+F +M ++ ++ P +HYGC+ID+LGRAG +++AE++ + EI +V
Sbjct: 428 GGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKM--EIRPDVFA 485
Query: 260 WRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319
LLGAC HGNV++GE V +K+ E++ G Y+LM N+ + V R+ DA ++R+ +
Sbjct: 486 CGALLGACRIHGNVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKN 545
Query: 320 RNALKFPGRSLV 331
+ K PG SL+
Sbjct: 546 KKMRKTPGCSLI 557
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 138/275 (50%), Gaps = 11/275 (4%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVK-----WGELEYARSLFEEMPCRNVVSWTGIID 56
+++G ++ + +V +NV ++ + G + + +F+E P R++VSWT +I
Sbjct: 126 IREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQ 185
Query: 57 GYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN 116
+T+ + A+ F M T++ V A GD+ Q +H Y
Sbjct: 186 AFTKAGLYSRAVEAFMEMCDLRLRADGR-TLVVVLSACSNLGDLNLGQKVHSYIRHYIDM 244
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
+ V N L+D Y KC + SA K+F+++ V KN+V+W ++ISG A G +EA++ F
Sbjct: 245 KADVFVGNALLDMYLKCDDLNSAYKVFDEMPV--KNVVTWNAMISGLAYQGRYREALDTF 302
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
MQ +KP+ VT + VLN+C++ G++E G K+ + +L D L+DM +
Sbjct: 303 RMMQDKGVKPDEVTLVGVLNSCANLGVLEIG-KWVHAYMRRNHILADKFVGNALLDMYAK 361
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
G +++A +V + +V + ++ + HG
Sbjct: 362 CGSIDEAFRVFESMKRR--DVYSYTAMIFGLALHG 394
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 6/231 (2%)
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
EP TI V A+ +R Q IH K G F+++VSN L+ Y+ CG I
Sbjct: 107 EPDGFTIPLVLKALALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQ 166
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
K+F++ ++LVSWT++I F G+ AVE F M + L+ + T + VL+ACS+
Sbjct: 167 KVFDE--CPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSN 224
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
G + G K + ++ D+ L+DM + L A KV +P + NVV W
Sbjct: 225 LGDLNLGQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMP--VKNVVTW 282
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
++ ++ G R + ++G D V + +L G E
Sbjct: 283 NAMISGLAYQGRYREALDTFR--MMQDKGVKPDEVTLVGVLNSCANLGVLE 331
>gi|347954500|gb|AEP33750.1| chloroplast biogenesis 19, partial [Lepidium sativum]
Length = 494
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/325 (37%), Positives = 188/325 (57%), Gaps = 6/325 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FD + ++N VTWN MI G ++ G+++ A +F+EMP R+++SWT +I G+ + A
Sbjct: 128 VFDYMEDKNSVTWNTMIDGYMRNGQVDNAVKVFDEMPERDLISWTAMITGFVKKGFHEEA 187
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
LA FR M P + I+A A G + H Y + F ++ VSN LI
Sbjct: 188 LAWFREM-QISGVNPDYVAIIAALAACTNLGALSFGLWAHRYVVSQDFRN-NVRVSNSLI 245
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y +CGC+ A ++F+ ++E++ +VSW S+I GFA +G E++ F +MQ+ KP+
Sbjct: 246 DLYCRCGCVEFARQVFD--TMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQEEGFKPD 303
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
VTF L ACSH GLVEEG ++F M + + P I+H+GCL+D+ RAGRLE A KV
Sbjct: 304 AVTFTGALTACSHVGLVEEGFQYFQMMKTDYRISPRIEHFGCLVDLYSRAGRLEDAIKVV 363
Query: 248 SGIPSEITNVVVWRTLLGACSFHGN-VEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P + N VV +LL AC HGN + ER+ + I +++ +YV++ N+ A +
Sbjct: 364 ESMPMK-PNEVVIGSLLAACRNHGNHTILAERLMKHISDLDVKGHSNYVILSNMYAADGK 422
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ A ++RR + K PG S +
Sbjct: 423 WEGASKMRRKMKGLGLKKQPGYSSI 447
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 130/297 (43%), Gaps = 41/297 (13%)
Query: 48 VVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAI--WQNGDVRNCQL 105
+VSWT I +R +R A F M EP+ IT +++ A + +G L
Sbjct: 33 IVSWTSRITLLSRDDRLAEAAREFSDMRLAG-IEPNHITFISLLSACGNFPSGSEALSDL 91
Query: 106 IHGYGEKRGFNAFHIHVS-------------------------------NCLIDTYAKCG 134
+HGY K G + H+ V N +ID Y + G
Sbjct: 92 LHGYACKLGLDRSHVMVGTAILGMYSKRGHVRKARLVFDYMEDKNSVTWNTMIDGYMRNG 151
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
+ +A+K+F+++ ++L+SWT++I+GF G +EA+ F MQ + P+ V ++
Sbjct: 152 QVDNAVKVFDEMP--ERDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIIAA 209
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L AC++ G + GL + + V + +++ LID+ R G +E A +V + E
Sbjct: 210 LAACTNLGALSFGL-WAHRYVVSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDTM--EK 266
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
VV W +++ + +GN RK+ E G+ D V L G E
Sbjct: 267 RTVVSWNSVIVGFAANGNANESLVYFRKM--QEEGFKPDAVTFTGALTACSHVGLVE 321
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 10/142 (7%)
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
+ +VSWTS I+ + EA F M+ ++PN +TF+S+L+AC G G +
Sbjct: 31 ETIVSWTSRITLLSRDDRLAEAAREFSDMRLAGIEPNHITFISLLSAC---GNFPSGSEA 87
Query: 211 FDKMVE--ECEVLPDIKHY---GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
++ C++ D H ++ M + G + +A V + E N V W T++
Sbjct: 88 LSDLLHGYACKLGLDRSHVMVGTAILGMYSKRGHVRKARLVFDYM--EDKNSVTWNTMID 145
Query: 266 ACSFHGNVEMGERVTRKILEME 287
+G V+ +V ++ E +
Sbjct: 146 GYMRNGQVDNAVKVFDEMPERD 167
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 125/335 (37%), Positives = 192/335 (57%), Gaps = 10/335 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + ++FD + RN+V+ M++G + ++ AR +F +M RNVVSW +I GYT+
Sbjct: 300 VNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQN 359
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN----- 116
+ AL LFR ++ E P+ T + A D+ + H + K+GF
Sbjct: 360 GENEEALRLFR-LLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGA 418
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
I V N LID Y KCG I ++FE + + ++ VSW +II G+A +G G EA++ F
Sbjct: 419 ESDIFVGNSLIDMYMKCGSIEDGSRVFEKM--KERDCVSWNAIIVGYAQNGYGAEALQIF 476
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
+M KP+ VT + VL ACSH GLVEEG +F M EE ++P HY C++D+LGR
Sbjct: 477 RKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSM-EEHGLIPLKDHYTCMVDLLGR 535
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
AG L +A+ + +P + VVW +LL AC HGN+EMG+ K+LE++ G YVL
Sbjct: 536 AGCLNEAKNLIEAMPVN-PDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVL 594
Query: 297 MYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ N+ A + R+GD R+R+++ ++ K PG S +
Sbjct: 595 LSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWI 629
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 89/316 (28%), Positives = 163/316 (51%), Gaps = 14/316 (4%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D KLFD +P+RN TWN +I+ L K G L+ A LF MP + SW ++ G+ +
Sbjct: 66 LDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQH 125
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+R +L F +M ++ +E + + A D+ +H K ++ ++
Sbjct: 126 DRFEESLEYFVKMHREDFL-LNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYST-DVY 183
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ + LID Y+KCG + A ++F + +ER NLV+W S+I+ + +G EA+E F RM
Sbjct: 184 MGSALIDMYSKCGSVACAEEVFSGM-IER-NLVTWNSLITCYEQNGPASEALEVFVRMMD 241
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
L+P+ VT SV++AC+ ++EGL+ ++V+ + D+ L+DM + ++
Sbjct: 242 SGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVN 301
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN-I 300
+A +V + I NVV +++ + +V+ + K+ + V+ +N +
Sbjct: 302 EARRVFDRM--SIRNVVSETSMVSGYARAASVKAARFMFSKMTQRN-------VVSWNAL 352
Query: 301 LAGVWRYGDAERLRRV 316
+AG + G+ E R+
Sbjct: 353 IAGYTQNGENEEALRL 368
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 107/252 (42%), Gaps = 37/252 (14%)
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
P+ + + ++ R +L+H F + I + N LID Y KC C+ A K
Sbjct: 13 PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQF-SMEIFIQNRLIDVYGKCDCLDDARK 71
Query: 142 LFEDI-----------------------------SVERKNLVSWTSIISGFAMHGMGKEA 172
LF+ + S+ + SW S++SGFA H +E+
Sbjct: 72 LFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEES 131
Query: 173 VENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL-KFFDKMVEECEVLPDIKHYGCLI 231
+E F +M + N +F S L+AC+ GL++ + +V + D+ LI
Sbjct: 132 LEYFVKMHREDFLLNEYSFGSALSACA--GLMDLNMGTQVHALVSKSRYSTDVYMGSALI 189
Query: 232 DMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG 291
DM + G + AE+V SG+ N+V W +L+ + N E + + M+ G
Sbjct: 190 DMYSKCGSVACAEEVFSGMIER--NLVTWNSLITC--YEQNGPASEALEVFVRMMDSGLE 245
Query: 292 GDYVLMYNILAG 303
D V + ++++
Sbjct: 246 PDEVTLASVVSA 257
>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 702
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/334 (36%), Positives = 186/334 (55%), Gaps = 10/334 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR----NVVSWTGIIDG 57
LK FD + ER+ TWNV+I+G +LE ++L ++M NV +W GII G
Sbjct: 328 LKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISG 387
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
+ + AL LF M P T+ + PA + + + +H + ++G+
Sbjct: 388 HVENGHNELALRLFTEMQTSSL-RPDIYTVGIILPACARLATIARGKQVHAHSIRQGYE- 445
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
+H+ L+D YAKCG I A++++ IS NLVS ++++ +AMHG G E + F
Sbjct: 446 LDVHIGAALVDMYAKCGSIKHAMQVYNRIS--NPNLVSQNAMLTAYAMHGHGDEGIALFR 503
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
M +P+ VTFLSVL++C H G VE G +FFD M V P +KHY C++D+L RA
Sbjct: 504 NMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTYY-NVTPSLKHYTCIVDLLSRA 562
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297
GRL++A ++ IP + + V+W LLG C GNVE+GE ++E+E G+YVL+
Sbjct: 563 GRLDEAYELVKKIPRK-PDSVMWGALLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLL 621
Query: 298 YNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
N+ A R+ D +R R+++ +R K PG S +
Sbjct: 622 ANLYAYAGRWHDLDRTRQMIKDRGMHKSPGCSWI 655
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 43/348 (12%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYTRMNRS 64
K+F +N+V++N MI G + G +E A+ LF++M ++ +SW +I GY
Sbjct: 198 KIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLF 257
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
+ AL++FR ++ E E T+ +V A +R + +H RG + ++ V
Sbjct: 258 DEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRGKEVHAQAVVRGLH-WNTFVGG 316
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERK--------------------------------- 151
L++ Y+KC + +A F+ ++ ER
Sbjct: 317 ALVEMYSKCEDLKAAQLAFDGVT-ERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFE 375
Query: 152 -NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
N+ +W IISG +G + A+ F MQ L+P+ T +L AC+ + G +
Sbjct: 376 PNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQV 435
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
+ + L D+ L+DM + G ++ A +V + I + N+V +L A + H
Sbjct: 436 HAHSIRQGYEL-DVHIGAALVDMYAKCGSIKHAMQVYNRISN--PNLVSQNAMLTAYAMH 492
Query: 271 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVD 318
G+ + G + R +L G+ D+V ++L+ G E D
Sbjct: 493 GHGDEGIALFRNML--GNGFRPDHVTFLSVLSSCVHAGAVETGHEFFD 538
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 129/278 (46%), Gaps = 37/278 (13%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITI- 87
++G L+ A +F +MP RN+ SWT I+ + AL+LF ++ + +I +
Sbjct: 106 RFGCLDDANLVFVKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKL------QLDDIGLE 159
Query: 88 LAVFPAIWQ-NGDVRNCQL---IHGYGEKR------------GFNAFHIHVSNCLIDTYA 131
VFP + + G +R +L +HG KR GF+ ++ N +I Y
Sbjct: 160 FFVFPVVLKLCGGLRVLELGRQLHGVVIKRCADMGSALKIFSGFSVKNVVSYNTMIVGYC 219
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF-ERMQKVVLKPNRVT 190
+ G + A +LF+ + + K+ +SW S+ISG+A + + EA+ F + + + ++ + T
Sbjct: 220 ENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFT 279
Query: 191 FLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY-----GCLIDMLGRAGRLEQAEK 245
SVL AC+ + G K V V+ + H+ G L++M + L+ A+
Sbjct: 280 LGSVLAACADMASLRRG-----KEVHAQAVVRGL-HWNTFVGGALVEMYSKCEDLKAAQL 333
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
G+ T W L+ + +E + + +K+
Sbjct: 334 AFDGVTERDT--ATWNVLISGYACCNQLENIQNLIQKM 369
>gi|242095216|ref|XP_002438098.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
gi|241916321|gb|EER89465.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
Length = 596
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 113/314 (35%), Positives = 180/314 (57%), Gaps = 12/314 (3%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVAC--- 77
++ K G+L AR +F+EM R+V +W ++ G + N AL LFRR+
Sbjct: 159 TTLLDSYAKCGDLASARRVFDEMSVRDVATWNALLAGLAQGTEPNLALVLFRRLAGSFRE 218
Query: 78 --EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
EP+E+T++A A Q G +++ H + G ++ V N LID Y+KCG
Sbjct: 219 LPPREEPNEVTVVAALSACAQLGALKDGLAAHDFARTIG-AVGNVRVCNALIDMYSKCGS 277
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ AL++F I +E + LVS+ + I +MHG G++A++ F+ M + +P+ VT+L+VL
Sbjct: 278 LSRALEVFHSIKLEDRTLVSYNATIQALSMHGHGEDALKLFDEMPARI-EPDEVTYLAVL 336
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
C+H GLV++G + FD M V P++KHYG ++D+LGRAGRL +A + +P
Sbjct: 337 GGCNHAGLVDDGRRVFDSM----RVPPNMKHYGTIVDLLGRAGRLAEAHDMIMHMPFP-A 391
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
++V+W+TLLGA HGNV++ E K+ ++ GDYVL+ N+ A R+ D R+R
Sbjct: 392 DIVLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGDYVLLSNVYASKSRWVDVGRVRD 451
Query: 316 VVDERNALKFPGRS 329
+ + K PG S
Sbjct: 452 TMRSNDVKKVPGFS 465
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 12/209 (5%)
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
A + + L+D+YAKCG + SA ++F+++SV +++ +W ++++G A A+ F
Sbjct: 152 AADVRLMTTLLDSYAKCGDLASARRVFDEMSV--RDVATWNALLAGLAQGTEPNLALVLF 209
Query: 177 ERMQKVVL------KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCL 230
R+ +PN VT ++ L+AC+ G +++GL D + +++ L
Sbjct: 210 RRLAGSFRELPPREEPNEVTVVAALSACAQLGALKDGLAAHD-FARTIGAVGNVRVCNAL 268
Query: 231 IDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 290
IDM + G L +A +V I E +V + + A S HG+ GE + EM
Sbjct: 269 IDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSMHGH---GEDALKLFDEMPARI 325
Query: 291 GGDYVLMYNILAGVWRYGDAERLRRVVDE 319
D V +L G G + RRV D
Sbjct: 326 EPDEVTYLAVLGGCNHAGLVDDGRRVFDS 354
>gi|326513504|dbj|BAJ87771.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326524908|dbj|BAK04390.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 505
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 197/332 (59%), Gaps = 12/332 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ D ++F+E+P R++V+++ ++T +K +L AR +F++MP R+VVSWT +I Y +
Sbjct: 175 VDDACRVFEEIPVRDVVSFSGLLTAHLKANDLHAARLVFDQMPHRDVVSWTAMISAYAKA 234
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R ALALF M +P E+T++++ A GD+ + + + + GF + +
Sbjct: 235 CRPQEALALFDAMP----MQPDEVTMVSIVSACTTLGDLATGERVRRHIDSLGFG-WMVS 289
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-- 179
+ N L+D YAKCG + A LF+ ++V ++L SW ++IS +A HG + F +M
Sbjct: 290 LRNALMDMYAKCGSLPEARALFDGMTV--RSLASWNTLISAYASHGDLDNTIAVFYQMLA 347
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE--CEVLPDIKHYGCLIDMLGRA 237
+ +KP+ VT L++L A +H G VEEG F+ M +V ++HYGC++DMLGRA
Sbjct: 348 EGNTVKPDGVTLLALLIAYTHKGCVEEGRAMFNAMQRGNFGKVELTVEHYGCVVDMLGRA 407
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297
G+LE+A +V +P +N V+W LLGAC HG+++M ER +++ + GG Y+L+
Sbjct: 408 GKLEEAYQVIEQMPIP-SNAVIWGALLGACRTHGDIDMAERAVKELRNLNPEEGGYYILL 466
Query: 298 YNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
++ A R +A +R ++ER K GRS
Sbjct: 467 SDMYASAGRIAEATEIRHAMNERGVQKTTGRS 498
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 85/185 (45%), Gaps = 35/185 (18%)
Query: 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISV-----------------------------E 149
H HV N L+ YA + A ++FE+I V
Sbjct: 158 HTHVHNALLHAYACRAAVDDACRVFEEIPVRDVVSFSGLLTAHLKANDLHAARLVFDQMP 217
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
+++VSWT++IS +A +EA+ F+ M ++P+ VT +S+++AC+ G + G +
Sbjct: 218 HRDVVSWTAMISAYAKACRPQEALALFDAMP---MQPDEVTMVSIVSACTTLGDLATGER 274
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
+ ++ + L+DM + G L +A + G+ + ++ W TL+ A +
Sbjct: 275 -VRRHIDSLGFGWMVSLRNALMDMYAKCGSLPEARALFDGM--TVRSLASWNTLISAYAS 331
Query: 270 HGNVE 274
HG+++
Sbjct: 332 HGDLD 336
>gi|356547105|ref|XP_003541958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g18970-like [Glycine max]
Length = 477
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 187/331 (56%), Gaps = 16/331 (4%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSN-----GAL 68
E N++ I ++ AR +F+EMP R+ V+W +I GY+ N AL
Sbjct: 140 ESNILVPTTKIYFYASNKDIISARRVFDEMPRRSTVTWNAMITGYSSQKEGNKKYALNAL 199
Query: 69 ALFRRM-VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA-FHIHVSNCL 126
+LF M V +P+ TI++V A+ Q G + IHG+ EK + + L
Sbjct: 200 SLFIDMLVDVSVIKPTGTTIVSVLSAVSQIGMLETGACIHGFAEKTVCTPEDDVFIGTGL 259
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+D Y+KCGC+ SAL +F ++ +KN+++WT++ + A+HG GK+A+E +M +KP
Sbjct: 260 VDMYSKCGCLDSALSVFWRMN--QKNILTWTAMTTSLAIHGKGKQALEVLYKMGAYGVKP 317
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N TF S L+AC HGGLVEEGL F +M ++P IKHYGC++D+LGRAG LE+A
Sbjct: 318 NEATFTSFLSACCHGGLVEEGLILFHEMKRTFGMMPQIKHYGCIVDLLGRAGNLEEAYDF 377
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG------DYVLMYNI 300
+P + V+WR+LLGAC HG+V MGE+V + +L++E DY+ + N+
Sbjct: 378 IMRMPIN-PDAVIWRSLLGACKIHGDVVMGEKVGKFLLQLEEWSSAESPKSEDYIALSNV 436
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ D E +R+ + + L G S V
Sbjct: 437 YALAEKWDDVEIVRKTMKSKGILSKAGSSAV 467
>gi|125528598|gb|EAY76712.1| hypothetical protein OsI_04667 [Oryza sativa Indica Group]
Length = 548
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 192/336 (57%), Gaps = 14/336 (4%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++ +LF+++P RN W+ M+TG K G + A+++F+++P RN+V+W +I GY +M
Sbjct: 201 METARELFNKMPARNAFVWSSMVTGNFKAGNADEAQAVFDKIPVRNLVNWNALIAGYAKM 260
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY--GEKRGFNAFH 119
AL F M+ + +P E T+ V A Q G + + +H + + N F
Sbjct: 261 GCCEKALEAFHSMLK-DKIKPDEFTMAGVLSACAQLGSLEQARKVHNFIIQHRIRKNQF- 318
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
V N L+D +AKCG + A +F+++ + +N W S+IS + HG EA+ F +M
Sbjct: 319 --VMNGLVDMFAKCGDLAFARNIFDNM--QWRNTECWNSMISALSSHGQSIEAIRLFSKM 374
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+ KPN +T L+VL AC+HGG V+EGL+ F K + V ++HYGCL+D+LGRAGR
Sbjct: 375 ECSEQKPNEITLLAVLGACTHGGFVDEGLRIFSKF-DIYGVAAAVEHYGCLVDLLGRAGR 433
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME----RGYGGDYV 295
L +A ++ + E N V+W +LLGAC HG+ EM E V+ +I ++ +Y+
Sbjct: 434 LREAYEIVKNMLVE-PNEVIWGSLLGACRVHGDAEMSELVSSEIHQLHSRRVSTNDAEYI 492
Query: 296 LMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
L+ NI+A R+ AER+RR + K PG S V
Sbjct: 493 LLSNIMASSERWEQAERMRRKMALHGVGKTPGCSSV 528
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 128/273 (46%), Gaps = 15/273 (5%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L D ++FD + +RN VT N M+ G G++ A +LF M R V+W +I G+
Sbjct: 105 LLADARRVFDGMLDRNAVTCNAMLAGYAAAGDMVSAEALFAGMGSRTPVTWATLIRGFA- 163
Query: 61 MNRSNGALALFRR-MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
G +A RR A + +T A GD+ + + + + NAF
Sbjct: 164 ---GKGDMAETRRWFEAMPLGMQNVVTWTVAVQAYVAAGDMETAREL--FNKMPARNAF- 217
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
V + ++ K G A +F+ I V +NLV+W ++I+G+A G ++A+E F M
Sbjct: 218 --VWSSMVTGNFKAGNADEAQAVFDKIPV--RNLVNWNALIAGYAKMGCCEKALEAFHSM 273
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
K +KP+ T VL+AC+ G +E+ K + +++ + + L+DM + G
Sbjct: 274 LKDKIKPDEFTMAGVLSACAQLGSLEQARKVHNFIIQH-RIRKNQFVMNGLVDMFAKCGD 332
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
L A + + + N W +++ A S HG
Sbjct: 333 LAFARNIFDNM--QWRNTECWNSMISALSSHGQ 363
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 63/308 (20%), Positives = 113/308 (36%), Gaps = 43/308 (13%)
Query: 38 SLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQN 97
+L+ CR+ W + Y + A ++ +++ + +L A
Sbjct: 11 ALYLTRGCRDPDMWANLAKVYASNSFLREAAIIYSKLLPHRTHHLPLVIVL--LKATASR 68
Query: 98 GDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFED------------ 145
D + +H K NA V L+ Y KCG + A ++F+
Sbjct: 69 ADPVLGRALHAEAVKSA-NAHDRLVGTTLVSVYCKCGLLADARRVFDGMLDRNAVTCNAM 127
Query: 146 ----------ISVE-------RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR 188
+S E + V+W ++I GFA G E FE M + N
Sbjct: 128 LAGYAAAGDMVSAEALFAGMGSRTPVTWATLIRGFAGKGDMAETRRWFEAMP--LGMQNV 185
Query: 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
VT+ + A G +E + F+KM + + ++ +AG ++A+ V
Sbjct: 186 VTWTVAVQAYVAAGDMETARELFNKMPARNAFV-----WSSMVTGNFKAGNADEAQAVFD 240
Query: 249 GIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
IP + N+V W L+ + G E +L+ + D M +L+ + G
Sbjct: 241 KIP--VRNLVNWNALIAGYAKMGCCEKALEAFHSMLKDK--IKPDEFTMAGVLSACAQLG 296
Query: 309 DAERLRRV 316
E+ R+V
Sbjct: 297 SLEQARKV 304
>gi|15226463|ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g21090
gi|4803934|gb|AAD29807.1| unknown protein [Arabidopsis thaliana]
gi|330252028|gb|AEC07122.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 597
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 114/323 (35%), Positives = 189/323 (58%), Gaps = 4/323 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++ + FDE+ +++ W +I+G K G++E A LF EMP +N VSWT +I GY R
Sbjct: 230 MESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQ 289
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
N AL LFR+M+A +P + T + A +R+ + IHGY + I
Sbjct: 290 GSGNRALDLFRKMIALG-VKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIV 348
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+S+ LID Y+K G + ++ ++F I ++ + V W ++IS A HG+G +A+ + M K
Sbjct: 349 ISS-LIDMYSKSGSLEASERVFR-ICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIK 406
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++PNR T + +LNACSH GLVEEGL++F+ M + ++PD +HY CLID+LGRAG +
Sbjct: 407 FRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFK 466
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+ + +P E + +W +LG C HGN E+G++ ++++++ Y+L+ +I
Sbjct: 467 ELMRKIEEMPFE-PDKHIWNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSIY 525
Query: 302 AGVWRYGDAERLRRVVDERNALK 324
A ++ E+LR V+ +R K
Sbjct: 526 ADHGKWELVEKLRGVMKKRRVNK 548
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 155/312 (49%), Gaps = 36/312 (11%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
D K+FD++ RNL +WN M++G VK G L AR +F+ MP R+VVSW ++ GY +
Sbjct: 100 DACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGN 159
Query: 64 SNGALAL---FRR-------------MVACEYTEPSEITILA---VFPAIWQNGDVRNCQ 104
+ AL FRR + AC + ++ A V A + + V +C
Sbjct: 160 LHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCS 219
Query: 105 LIHGYGE-------KRGFNAF---HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 154
+I Y + KR F+ IH+ LI YAK G + +A KLF ++ KN V
Sbjct: 220 IIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMP--EKNPV 277
Query: 155 SWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKM 214
SWT++I+G+ G G A++ F +M + +KP + TF S L A + + G + M
Sbjct: 278 SWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYM 337
Query: 215 VEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
+ V P+ LIDM ++G LE +E+V I + + V W T++ A + HG
Sbjct: 338 I-RTNVRPNAIVISSLIDMYSKSGSLEASERVFR-ICDDKHDCVFWNTMISALAQHG--- 392
Query: 275 MGERVTRKILEM 286
+G + R + +M
Sbjct: 393 LGHKALRMLDDM 404
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 109/260 (41%), Gaps = 63/260 (24%)
Query: 96 QNGDVRNCQL---IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI------ 146
Q GD ++ + IH + + GF + +SN LI Y KCG A K+F+ +
Sbjct: 55 QCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLY 114
Query: 147 -----------------------SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
S+ +++VSW +++ G+A G EA+ ++ ++
Sbjct: 115 SWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSG 174
Query: 184 LKPNRVTFLSVLNAC-----------SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLID 232
+K N +F +L AC +HG ++ G F +V C + ID
Sbjct: 175 IKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAG--FLSNVVLSCSI----------ID 222
Query: 233 MLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG 292
+ G++E A++ + + ++ +W TL+ + G++E E++ ++ E
Sbjct: 223 AYAKCGQMESAKRCFDEMT--VKDIHIWTTLISGYAKLGDMEAAEKLFCEMPE------K 274
Query: 293 DYVLMYNILAGVWRYGDAER 312
+ V ++AG R G R
Sbjct: 275 NPVSWTALIAGYVRQGSGNR 294
>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 185/330 (56%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D L + T+N +IT + G + ARSLF+EMP RN VSW+ +++GY +
Sbjct: 144 LADAHLLLRTSAAVDASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQA 203
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL +F +M A + P + ++ V A Q G + + +HGY + +
Sbjct: 204 GDGREALGVFSQMQA-QGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIR-MTVF 261
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ L+D YAKCG + +++FE ++ KN+++WT++I G AMHG G +++ F +M+
Sbjct: 262 LGTALVDMYAKCGEVQLGMEVFE--GMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMES 319
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KP+ + F+ L AC+H GLV++G + F+ MV + P I+HYGC++D+L R G L
Sbjct: 320 SGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLS 379
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + +P + + ++W L+ C FH NVE+ E V + +E+E G YVL+ NI
Sbjct: 380 EARDMVEKMPMK-PDALIWGALMAGCRFHKNVELAEYVIKHWIELEPDKSGAYVLLGNIY 438
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ R+ A +R ++ E+ K PG S V
Sbjct: 439 SASGRHASAREIRNLMREKGVEKTPGCSNV 468
>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 638
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 116/331 (35%), Positives = 191/331 (57%), Gaps = 6/331 (1%)
Query: 2 LKDGSKLFDELPE-RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
++ ++FDE+P R++V+WN MI G V+ G++ A+ LF EMP ++V+SW II G +
Sbjct: 184 VESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQ 243
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
AL F+ + + P+E ++++ A Q G + + IH F
Sbjct: 244 NGELEKALDYFKEL-GEQKLRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRF-PMTA 301
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+ L+D YAKCGCI + LF+ + K+ SW +I G A HG+G+EA+ FE+
Sbjct: 302 SLGTALVDMYAKCGCIDESRFLFDRMP--EKDKWSWNVMICGLATHGLGQEALALFEKFL 359
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
P VTF+ VL ACS GLV EG FF M + + P+++HYGC++D+L RAG +
Sbjct: 360 TQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYGCMVDLLSRAGFV 419
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
A ++ + +P+ + V+W ++LG+C HG +E+GE + K+++M+ + G YV + I
Sbjct: 420 YDAVEMINRMPAP-PDPVLWASVLGSCQVHGFIELGEEIGNKLIQMDPTHNGHYVQLARI 478
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + ++ D ++RR++ ERN+ K G SL+
Sbjct: 479 FARLRKWEDVSKVRRLMAERNSNKIAGWSLI 509
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 101/215 (46%), Gaps = 7/215 (3%)
Query: 34 EYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPA 93
+YA S++ + V + +I + + + +++L+ M P++ T+ V A
Sbjct: 83 DYALSIYNSISHPTVFATNNMIRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQA 142
Query: 94 IWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 153
+R + + K GF + V N LI Y C + SA ++F+++ R ++
Sbjct: 143 CSNAFAIREGAQVQTHVIKLGF-VKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSR-DV 200
Query: 154 VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDK 213
VSW S+I GF G A + F M + + +++ ++++ C G +E+ L +F +
Sbjct: 201 VSWNSMIVGFVRLGQISVAQKLFVEMP----EKDVISWGTIISGCVQNGELEKALDYFKE 256
Query: 214 MVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
+ E+ ++ P+ L+ + G LE +++ S
Sbjct: 257 LGEQ-KLRPNEAILVSLLAAAAQLGTLEYGKRIHS 290
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 92/219 (42%), Gaps = 36/219 (16%)
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFLSVLNA 197
AL ++ IS + + ++I F + + ++ + M + V PN+ T VL A
Sbjct: 85 ALSIYNSIS--HPTVFATNNMIRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQA 142
Query: 198 CSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS----- 252
CS+ + EG + ++ + + D+ LI + R+E A++V +PS
Sbjct: 143 CSNAFAIREGAQVQTHVI-KLGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVV 201
Query: 253 -------------EIT------------NVVVWRTLLGACSFHGNVEMGERVTRKILEME 287
+I+ +V+ W T++ C +G +E +++ E
Sbjct: 202 SWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKEL--GE 259
Query: 288 RGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFP 326
+ + ++ ++LA + G E +R+ N+L+FP
Sbjct: 260 QKLRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFP 298
>gi|347954508|gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium officinale]
Length = 447
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 120/325 (36%), Positives = 188/325 (57%), Gaps = 6/325 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FD + ++N VTWN MI G ++ G++ A LF+EM R+++SWT +++G+ + A
Sbjct: 78 IFDYMEDKNSVTWNTMIDGYMRSGQVNTAVKLFDEMLNRDLISWTAMVNGFVKKGFHEEA 137
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L+ FR M +P + I+A A G + IH Y + F ++ VSN LI
Sbjct: 138 LSWFREM-QISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVMSQDFKN-NVRVSNSLI 195
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y +CGC+ A ++F+ + E++ +VSW S+I GFA +G E++ F +MQ+ KP+
Sbjct: 196 DLYCRCGCVEFARQVFDKM--EKRTVVSWNSVIVGFAANGNAHESLFYFRKMQEEGFKPD 253
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
VTF L ACSH GLVEEGL++F M + + P I+HYGC++D+ RAGRLE A KV
Sbjct: 254 AVTFTGALTACSHVGLVEEGLRYFQTMKRDYRISPRIEHYGCIVDLYSRAGRLEDALKVV 313
Query: 248 SGIPSEITNVVVWRTLLGACSFHG-NVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P + N VV +LL AC HG N + ER+ + + ++ +YV++ N+ A +
Sbjct: 314 QSMPMK-PNEVVIGSLLAACKNHGNNTLLAERLMKHLSDLNVKSHSNYVILSNMYAADGK 372
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ A ++RR + K PG S +
Sbjct: 373 WEGASKMRRKMKGLGLKKQPGFSSI 397
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 117/264 (44%), Gaps = 40/264 (15%)
Query: 81 EPSEITILAVFPAI--WQNGDVRNCQLIHGYGEKRGFNAFHIHVS--------------- 123
EP+ IT +A+ + +G L+HGY K G + H+ V
Sbjct: 15 EPNHITFIALLSGCGDFPSGSEALGDLLHGYACKLGLDRTHVMVGTAILGMYSKRGRFRK 74
Query: 124 ----------------NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 167
N +ID Y + G + +A+KLF+++ ++L+SWT++++GF G
Sbjct: 75 ARLIFDYMEDKNSVTWNTMIDGYMRSGQVNTAVKLFDEML--NRDLISWTAMVNGFVKKG 132
Query: 168 MGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY 227
+EA+ F MQ +KP+ V ++ L AC++ G + GL + + V + +++
Sbjct: 133 FHEEALSWFREMQISGVKPDYVAIIAALAACTNLGALSFGL-WIHRYVMSQDFKNNVRVS 191
Query: 228 GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME 287
LID+ R G +E A +V + E VV W +++ + +GN RK+ E
Sbjct: 192 NSLIDLYCRCGCVEFARQVFDKM--EKRTVVSWNSVIVGFAANGNAHESLFYFRKM--QE 247
Query: 288 RGYGGDYVLMYNILAGVWRYGDAE 311
G+ D V L G E
Sbjct: 248 EGFKPDAVTFTGALTACSHVGLVE 271
>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
Length = 636
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 120/326 (36%), Positives = 195/326 (59%), Gaps = 6/326 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++F E+ ERN+V+W+ ++ G+VKW +E R +F+EMP RN V WT +I GY S
Sbjct: 178 RVFCEMNERNVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSRE 237
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
L MV + +T+ ++ A Q+GDV + +H Y K HI V L
Sbjct: 238 GFLLLDEMVLRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGTAL 297
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+D YAKCG I A K+F+ + ++N+V+W +++ G AMHG GK ++ F +M + KP
Sbjct: 298 VDMYAKCGPIDMAFKVFKYLP--KRNVVAWNAMLGGLAMHGRGKFVLDIFPKMIEEA-KP 354
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +TF++VL+ACSH GLV++G +F + E P I+HY C++D+LGRAG LE+A +
Sbjct: 355 DDLTFMAVLSACSHSGLVDQGYHYFRSLESEYGTTPKIEHYACMVDILGRAGHLEEAVML 414
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY-VLMYNILAGVW 305
+P N VV +LLG+C+ HG +++GER+ +++++M+ G+ +Y VL+ N+
Sbjct: 415 IKKMPM-CPNEVVLGSLLGSCNAHGKLQLGERILQELIQMD-GHNTEYHVLLSNMYVLEG 472
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
+ A LR+++ + K PG S +
Sbjct: 473 KQDKANSLRQILKSKGIRKVPGVSSI 498
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 117/291 (40%), Gaps = 43/291 (14%)
Query: 31 GELEYARSLFEEMP--CRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
G AR LF ++P ++V WT ++ + F + + E ++ ++
Sbjct: 67 GVTSSARHLFYQIPRSHKDVTDWTTLLTSLVQHGTKPSEGFFFFKEMRKEGVVLDDVAMI 126
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS- 147
+VF + D+ + G K G + V N +++ Y KCG + ++F +++
Sbjct: 127 SVFVLCTRVEDLGMGRQAQGCLVKMGL-GLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNE 185
Query: 148 ----------------------------VERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+ +N V WT +I+G+ +G +E + M
Sbjct: 186 RNVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEM 245
Query: 180 -QKVVLKPNRVTFLSVLNACSHGGLVEEG----LKFFDKMVEECEVLPDIKHYGCLIDML 234
+ L N VT S+L+AC+ G V G + M E ++ L+DM
Sbjct: 246 VLRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGT----ALVDMY 301
Query: 235 GRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
+ G ++ A KV +P NVV W +LG + HG + + K++E
Sbjct: 302 AKCGPIDMAFKVFKYLPKR--NVVAWNAMLGGLAMHGRGKFVLDIFPKMIE 350
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 26/153 (16%)
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG-KEAVENFERMQKV 182
N L YA CG SA LF I K++ WT++++ HG E F+ M+K
Sbjct: 57 NALHHLYASCGVTSSARHLFYQIPRSHKDVTDWTTLLTSLVQHGTKPSEGFFFFKEMRKE 116
Query: 183 VLKPNRVTFLSVLNACS-----------HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLI 231
+ + V +SV C+ G LV+ GL +K ++
Sbjct: 117 GVVLDDVAMISVFVLCTRVEDLGMGRQAQGCLVKMGLGL------------GVKVCNAIM 164
Query: 232 DMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
+M + G +E+ +V + NVV W TLL
Sbjct: 165 NMYVKCGLVEEVRRVFCEMNER--NVVSWSTLL 195
>gi|42564994|ref|NP_188527.2| mitochondrial editing factor 20 [Arabidopsis thaliana]
gi|75273478|sp|Q9LJ69.1|PP243_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g18970
gi|9280314|dbj|BAB01693.1| unnamed protein product [Arabidopsis thaliana]
gi|134031924|gb|ABO45699.1| At3g18970 [Arabidopsis thaliana]
gi|332642654|gb|AEE76175.1| mitochondrial editing factor 20 [Arabidopsis thaliana]
Length = 472
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 121/318 (38%), Positives = 185/318 (58%), Gaps = 17/318 (5%)
Query: 28 VKWGELEYARSLFEEMPCRNVVSWTGIIDGY-TRMNRSN----GALALFRRMVAC-EYTE 81
K G+L YAR +F+EMP R V+W +I GY + ++ N A+ LFRR C
Sbjct: 158 AKNGDLRYARKVFDEMPERTSVTWNAMIGGYCSHKDKGNHNARKAMVLFRRFSCCGSGVR 217
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA-FHIHVSNCLIDTYAKCGCIFSAL 140
P++ T++ V AI Q G + L+HGY EK GF + + L+D Y+KCGC+ +A
Sbjct: 218 PTDTTMVCVLSAISQTGLLEIGSLVHGYIEKLGFTPEVDVFIGTALVDMYSKCGCLNNAF 277
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
+FE + V KN+ +WTS+ +G A++G G E RM + +KPN +TF S+L+A H
Sbjct: 278 SVFELMKV--KNVFTWTSMATGLALNGRGNETPNLLNRMAESGIKPNEITFTSLLSAYRH 335
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
GLVEEG++ F M V P I+HYGC++D+LG+AGR+++A + +P + + ++
Sbjct: 336 IGLVEEGIELFKSMKTRFGVTPVIEHYGCIVDLLGKAGRIQEAYQFILAMPIK-PDAILL 394
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMER-------GYGGDYVLMYNILAGVWRYGDAERL 313
R+L ACS +G MGE + + +LE+ER DYV + N+LA ++ + E+L
Sbjct: 395 RSLCNACSIYGETVMGEEIGKALLEIEREDEKLSGSECEDYVALSNVLAHKGKWVEVEKL 454
Query: 314 RRVVDERNALKFPGRSLV 331
R+ + ER PG S V
Sbjct: 455 RKEMKERRIKTRPGYSFV 472
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 10/197 (5%)
Query: 13 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFR 72
PE ++ ++ K G L A S+FE M +NV +WT + G R N L
Sbjct: 253 PEVDVFIGTALVDMYSKCGCLNNAFSVFELMKVKNVFTWTSMATGLALNGRGNETPNLLN 312
Query: 73 RMVACEYTEPSEITILAVFPAIWQNGDVRN-CQLIHGYGEKRGFNAFHIHVSNCLIDTYA 131
RM A +P+EIT ++ A G V +L + G H C++D
Sbjct: 313 RM-AESGIKPNEITFTSLLSAYRHIGLVEEGIELFKSMKTRFGVTPVIEHY-GCIVDLLG 370
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKE---AVENFERMQKVVLK 185
K G I A + + + + + + S+ + +++G MG+E A+ ER + +
Sbjct: 371 KAGRIQEAYQFILAMPI-KPDAILLRSLCNACSIYGETVMGEEIGKALLEIEREDEKLSG 429
Query: 186 PNRVTFLSVLNACSHGG 202
++++ N +H G
Sbjct: 430 SECEDYVALSNVLAHKG 446
>gi|302143938|emb|CBI23043.3| unnamed protein product [Vitis vinifera]
Length = 539
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 121/334 (36%), Positives = 186/334 (55%), Gaps = 10/334 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR----NVVSWTGIIDG 57
LK FD + ER+ TWNV+I+G +LE ++L ++M NV +W GII G
Sbjct: 165 LKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISG 224
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
+ + AL LF M P T+ + PA + + + +H + ++G+
Sbjct: 225 HVENGHNELALRLFTEMQTSSL-RPDIYTVGIILPACARLATIARGKQVHAHSIRQGYE- 282
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
+H+ L+D YAKCG I A++++ IS NLVS ++++ +AMHG G E + F
Sbjct: 283 LDVHIGAALVDMYAKCGSIKHAMQVYNRIS--NPNLVSQNAMLTAYAMHGHGDEGIALFR 340
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
M +P+ VTFLSVL++C H G VE G +FFD M V P +KHY C++D+L RA
Sbjct: 341 NMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTYY-NVTPSLKHYTCIVDLLSRA 399
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297
GRL++A ++ IP + + V+W LLG C GNVE+GE ++E+E G+YVL+
Sbjct: 400 GRLDEAYELVKKIPRK-PDSVMWGALLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLL 458
Query: 298 YNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
N+ A R+ D +R R+++ +R K PG S +
Sbjct: 459 ANLYAYAGRWHDLDRTRQMIKDRGMHKSPGCSWI 492
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 133/316 (42%), Gaps = 46/316 (14%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYTRMNRS 64
K+F +N+V++N MI G + G +E A+ LF++M ++ +SW +I GY
Sbjct: 102 KIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYA----- 156
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
++ CE D++ QL +R + N
Sbjct: 157 -------DNLLKCE--------------------DLKAAQLAFDGVTERDTATW-----N 184
Query: 125 CLIDTYAKCGCIFSALKLFEDISVE--RKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
LI YA C + + L + + + N+ +W IISG +G + A+ F MQ
Sbjct: 185 VLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTS 244
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
L+P+ T +L AC+ + G + + + L D+ L+DM + G ++
Sbjct: 245 SLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYEL-DVHIGAALVDMYAKCGSIKH 303
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302
A +V + I + N+V +L A + HG+ + G + R +L G+ D+V ++L+
Sbjct: 304 AMQVYNRISN--PNLVSQNAMLTAYAMHGHGDEGIALFRNML--GNGFRPDHVTFLSVLS 359
Query: 303 GVWRYGDAERLRRVVD 318
G E D
Sbjct: 360 SCVHAGAVETGHEFFD 375
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 121/241 (50%), Gaps = 21/241 (8%)
Query: 47 NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLI 106
N+VSW+ +I G+ + AL L RM A + EP+ T+ +V PA + ++ + I
Sbjct: 10 NLVSWSAVIGGFAQNGYDKEALELLCRMQAAGF-EPNARTLASVLPACARLQNLNLGKEI 68
Query: 107 HGYGEKRGF--NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFA 164
HGY + GF N F V N L+D Y +C + SALK+F SV KN+VS+ ++I G+
Sbjct: 69 HGYVTRHGFMSNPF---VVNGLVDVYRRCADMGSALKIFSGFSV--KNVVSYNTMIVGYC 123
Query: 165 MHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK----FFDKMVEECEV 220
+G ++A E F++M+ ++ + +++ S+++ + L E LK FD + E
Sbjct: 124 ENGNVEKAKELFDQME--LVGKDTISWNSMISGYADNLLKCEDLKAAQLAFDGVTER--- 178
Query: 221 LPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE--ITNVVVWRTLLGACSFHGNVEMGER 278
D + LI +LE + + + + NV W ++ +G+ E+ R
Sbjct: 179 --DTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALR 236
Query: 279 V 279
+
Sbjct: 237 L 237
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
+ NLVSW+++I GFA +G KEA+E RMQ +PN T SVL AC+ + G K
Sbjct: 8 KPNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLG-K 66
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
V + + L+D+ R + A K+ SG + NVV + T++
Sbjct: 67 EIHGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGF--SVKNVVSYNTMIVGYCE 124
Query: 270 HGNVEMGERV 279
+GNVE + +
Sbjct: 125 NGNVEKAKEL 134
>gi|297846398|ref|XP_002891080.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336922|gb|EFH67339.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 562
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 189/313 (60%), Gaps = 8/313 (2%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
++ K G+L A LF+EM R+V SW +I G NR++ AL L++RM E
Sbjct: 147 TTLLDAYSKNGDLISALKLFDEMSVRDVASWNALIAGLVAGNRASEALELYKRM-EMEGI 205
Query: 81 EPSEITILAVFPAIWQNGDVRNCQ-LIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSA 139
SE+T++A A GDV+ + ++HGY + + ++ VSN +ID Y+KCG + A
Sbjct: 206 RRSEVTVVAALGACSHLGDVKEGEKILHGYIKDEKLD-HNVIVSNAVIDMYSKCGFVDKA 264
Query: 140 LKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS 199
++FE + +K++V+W ++I+GF++HG A+E FE+++ +KP+ V++L+ L AC
Sbjct: 265 FQVFEQFT-GKKSVVTWNTMITGFSVHGEAHRALEIFEKLEHNGIKPDDVSYLAALTACR 323
Query: 200 HGGLVEEGLKFFDKMVEECE-VLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
H GLVE G+ F+ M C V P++KHYGC++D+L RAGRL +A + + S + + V
Sbjct: 324 HTGLVEYGISIFNNMA--CNGVEPNMKHYGCVVDLLSRAGRLREAHDIICSM-SMVPDPV 380
Query: 259 VWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVD 318
+W++LLGA H NVEM E +RKI EM GD+VL+ N+ A R+ D +R ++
Sbjct: 381 LWQSLLGASEIHNNVEMAEIASRKIKEMGVNNDGDFVLLSNVYAAQGRWKDVGLVRDDME 440
Query: 319 ERNALKFPGRSLV 331
+ K PG S +
Sbjct: 441 SKQVKKVPGISYI 453
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 133/267 (49%), Gaps = 18/267 (6%)
Query: 26 GLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEI 85
+ +G+L +A +F +P W II G+ + + A + +R M+ + S
Sbjct: 46 AISPFGDLSFAVKIFRHIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSML-----QRSSS 100
Query: 86 TILAVFPAIWQNGDVRNCQ---------LIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136
+ L A+ + ++ C IH +RGF+A + + L+D Y+K G +
Sbjct: 101 SALCRVDALTCSFTLKACARALCSSAMVQIHCQISRRGFSADAL-LCTTLLDAYSKNGDL 159
Query: 137 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLN 196
SALKLF+++SV +++ SW ++I+G EA+E ++RM+ ++ + VT ++ L
Sbjct: 160 ISALKLFDEMSV--RDVASWNALIAGLVAGNRASEALELYKRMEMEGIRRSEVTVVAALG 217
Query: 197 ACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256
ACSH G V+EG K +++ ++ ++ +IDM + G +++A +V + +
Sbjct: 218 ACSHLGDVKEGEKILHGYIKDEKLDHNVIVSNAVIDMYSKCGFVDKAFQVFEQFTGK-KS 276
Query: 257 VVVWRTLLGACSFHGNVEMGERVTRKI 283
VV W T++ S HG + K+
Sbjct: 277 VVTWNTMITGFSVHGEAHRALEIFEKL 303
>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 117/327 (35%), Positives = 185/327 (56%), Gaps = 5/327 (1%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
G +LF+E+P N+ +WN+MI+G + G+L AR+LF+ MP R+ VSW II GY +
Sbjct: 300 GRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLY 359
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
A+ + M + + T A + + +HG + G+ + V N
Sbjct: 360 EEAMNMLVEMKR-DGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCL-VGN 417
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
L+ Y KCGCI A +F+ V+ K++VSW ++++G+A HG G++A+ FE M +
Sbjct: 418 ALVGMYCKCGCIDEAYDVFQ--GVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGV 475
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
KP+ +T + VL+ACSH GL + G ++F M ++ + P+ KHY C+ID+LGRAG LE+A+
Sbjct: 476 KPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQ 535
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+ +P E + W LLGA HGN+E+GE+ + +ME G YVL+ N+ A
Sbjct: 536 NLIRNMPFE-PDAATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAAS 594
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
R+ D ++R + + K PG S V
Sbjct: 595 GRWVDVSKMRLKMRQIGVQKTPGYSWV 621
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 151/327 (46%), Gaps = 47/327 (14%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L D +LFD++P R+L++WN MI+G + G+L AR LFEE P R+V +WT ++ Y +
Sbjct: 203 MLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQ 262
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR----GFN 116
+G L RR VF + Q ++ +I GY + + G
Sbjct: 263 ----DGMLDEARR----------------VFDEMPQKREMSYNVMIAGYAQYKRMDMGRE 302
Query: 117 AF------HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 170
F +I N +I Y + G + A LF+ + +++ VSW +II+G+A +G+ +
Sbjct: 303 LFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFD--MMPQRDSVSWAAIIAGYAQNGLYE 360
Query: 171 EAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC- 229
EA+ M++ NR TF L+AC+ +E G + ++V GC
Sbjct: 361 EAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTG------YEKGCL 414
Query: 230 ----LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
L+ M + G +++A V G+ + ++V W T+L + HG V ++
Sbjct: 415 VGNALVGMYCKCGCIDEAYDVFQGVQHK--DIVSWNTMLAGYARHGFGRQALTVFESMIT 472
Query: 286 MERGYGGDYVLMYNILAGVWRYGDAER 312
G D + M +L+ G +R
Sbjct: 473 A--GVKPDEITMVGVLSACSHTGLTDR 497
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 131/268 (48%), Gaps = 27/268 (10%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFD++P ++L +WN+M+TG + L AR LF+ MP ++VVSW ++ GY R + A
Sbjct: 86 LFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEA 145
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
+F RM + I+ + A ++G + + + + + + NCL+
Sbjct: 146 RDVFDRM-----PHKNSISWNGLLAAYVRSGRLEEARRLF-----ESKSDWELISCNCLM 195
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
Y K + A +LF+ I V ++L+SW ++ISG+A G +A FE P
Sbjct: 196 GGYVKRNMLGDARQLFDQIPV--RDLISWNTMISGYAQDGDLSQARRLFEE------SPV 247
Query: 188 R--VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
R T+ +++ A G+++E + FD+M ++ E+ Y +I + R++ +
Sbjct: 248 RDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREM-----SYNVMIAGYAQYKRMDMGRE 302
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNV 273
+ +P N+ W ++ +G++
Sbjct: 303 LFEEMP--FPNIGSWNIMISGYCQNGDL 328
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 105/256 (41%), Gaps = 54/256 (21%)
Query: 24 ITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPS 83
I+ ++ G + A +F+ MP RN VS+ +I GY R + + A LF +M +
Sbjct: 40 ISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFS-- 97
Query: 84 EITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLF 143
W N ++ YA+ + A LF
Sbjct: 98 -----------W----------------------------NLMLTGYARNRRLRDARMLF 118
Query: 144 EDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGL 203
+ S+ K++VSW +++SG+ G EA + F+RM N +++ +L A G
Sbjct: 119 D--SMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMP----HKNSISWNGLLAAYVRSGR 172
Query: 204 VEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTL 263
+EE + F+ + ++ CL+ + L A ++ IP + +++ W T+
Sbjct: 173 LEEARRLFESKSDW-----ELISCNCLMGGYVKRNMLGDARQLFDQIP--VRDLISWNTM 225
Query: 264 LGACSFHGNVEMGERV 279
+ + G++ R+
Sbjct: 226 ISGYAQDGDLSQARRL 241
>gi|255559617|ref|XP_002520828.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539959|gb|EEF41537.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 656
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 117/325 (36%), Positives = 181/325 (55%), Gaps = 7/325 (2%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K FD +P +++ WN MIT V G + A +LF MP +N+VSW +IDGY R +
Sbjct: 289 KYFDHMPTKDIAAWNAMITAYVDQGSMAEASNLFNLMPEKNIVSWNALIDGYARNGPESN 348
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
+L M+ + +P+E TI +V A + HG GF + ++N L
Sbjct: 349 SLRYLILMLRSNF-KPNETTITSVLTAC---DSILELMQAHGLVIHLGFEQDKV-LANGL 403
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+ TY++CG + SA +F+ + + K++VSWT++I ++ HG G A++ F RM + KP
Sbjct: 404 VTTYSRCGDVLSARFIFDQLEI--KDIVSWTAMILAYSNHGCGPHALQVFARMLRSGAKP 461
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +TF+ +L+ACSH GLV++G FD M V P +HY CL+D+LGRAG + +A KV
Sbjct: 462 DGITFVGLLSACSHAGLVKKGQMLFDSMSCAYGVEPRAEHYSCLVDILGRAGEMNKAMKV 521
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
S +P + V LLGAC H +V + + K++E E G YVL+ N A +
Sbjct: 522 VSEMPPHECDGAVLGALLGACRLHKDVGLANHIGEKLIEKEPTSSGSYVLLANAYAACGK 581
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ + +R+ + ERN K PG S +
Sbjct: 582 WNEFAEVRKEMKERNVKKEPGFSQI 606
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 129/279 (46%), Gaps = 34/279 (12%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
F+ + +F+++PE+N++ W M+ V+ E++ A LF +MP RN+ SW +I G
Sbjct: 190 FIDEARDIFNQMPEKNIIAWTAMVKSYVENDEIDEAFELFYQMPQRNLYSWNIMISGCIN 249
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
NR N A+ LF M + +E++ + + +NG + + + + A+
Sbjct: 250 ANRLNEAIQLFNSM-----PQRNEVSWTTLVTGLARNGMMELARKYFDHMPTKDIAAW-- 302
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
N +I Y G + A LF + KN+VSW ++I G+A +G ++ M
Sbjct: 303 ---NAMITAYVDQGSMAEASNLFN--LMPEKNIVSWNALIDGYARNGPESNSLRYLILML 357
Query: 181 KVVLKPNRVTFLSVLNAC--------SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLID 232
+ KPN T SVL AC +HG ++ G E+ +VL + L+
Sbjct: 358 RSNFKPNETTITSVLTACDSILELMQAHGLVIHLGF-------EQDKVLAN-----GLVT 405
Query: 233 MLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
R G + A + + EI ++V W ++ A S HG
Sbjct: 406 TYSRCGDVLSARFIFDQL--EIKDIVSWTAMILAYSNHG 442
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 130/270 (48%), Gaps = 23/270 (8%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L LF E+PERN+V + MI+G V+ G L+ AR +F++M RNV SWT ++ GY ++
Sbjct: 98 LPQAEILFREIPERNVVADSAMISGYVRAGRLDKARQVFDQMVERNVFSWTSLVSGYFKI 157
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ A+ LF +M E + ++ QNG + + I ++ A+
Sbjct: 158 GNVDEAMRLFNQM-----PEKNVVSWTTAVVGYAQNGFIDEARDIFNQMPEKNIIAW--- 209
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
++ +Y + I A +LF + ++NL SW +ISG EA++ F M +
Sbjct: 210 --TAMVKSYVENDEIDEAFELF--YQMPQRNLYSWNIMISGCINANRLNEAIQLFNSMPQ 265
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
N V++ +++ + G++E K+FD M + DI + +I G +
Sbjct: 266 R----NEVSWTTLVTGLARNGMMELARKYFDHMPTK-----DIAAWNAMITAYVDQGSMA 316
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+A + + +P + N+V W L+ + +G
Sbjct: 317 EASNLFNLMPEK--NIVSWNALIDGYARNG 344
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 127/277 (45%), Gaps = 54/277 (19%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+K+ K+FDE+P R+ V++ MIT +K +L A LF E+P RNVV+ + +I GY R
Sbjct: 67 VKEARKVFDEMPRRDAVSYASMITVYLKNKDLPQAEILFREIPERNVVADSAMISGYVRA 126
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R + A +F +MV E+ F+
Sbjct: 127 GRLDKARQVFDQMV-----------------------------------ERNVFSW---- 147
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
L+ Y K G + A++LF + KN+VSWT+ + G+A +G EA + F +M
Sbjct: 148 --TSLVSGYFKIGNVDEAMRLFNQMP--EKNVVSWTTAVVGYAQNGFIDEARDIFNQMP- 202
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ N + + +++ + ++E + F +M + +I GC+ A RL
Sbjct: 203 ---EKNIIAWTAMVKSYVENDEIDEAFELFYQMPQRNLYSWNIMISGCI-----NANRLN 254
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGER 278
+A ++ + +P N V W TL+ + +G +E+ +
Sbjct: 255 EAIQLFNSMPQR--NEVSWTTLVTGLARNGMMELARK 289
>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 639
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 192/332 (57%), Gaps = 8/332 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D +LF +PERN+V+W+ +++G K G++E AR +F++MP +N+V+WT ++ +
Sbjct: 266 MEDAFELFQCMPERNVVSWSTVVSGYCKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQN 325
Query: 62 NRSNGALALFRRM--VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
A LF +M A E + ++ILA A ++G + + IH Y R
Sbjct: 326 GLVEEAGRLFTQMKEAAVELDVAAVVSILA---ACAESGSLALGKRIHRYVRTRQLGR-S 381
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
HV N +ID + KCGC+ A +F D + K+ VSW +II GFAMHG G +A++ F +M
Sbjct: 382 THVCNAMIDMFCKCGCVNRADYVF-DTEIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQM 440
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+ +P+ VT ++VL+AC+H G VEEG + F M + ++P I+HYGC+ID+LGR G
Sbjct: 441 KLQGFRPDAVTMINVLSACTHMGFVEEGRQHFSNMERDYGIVPQIEHYGCMIDLLGRGGL 500
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
+E+A + +P + N V+W +LL AC H NVE E ++ +++ G+Y ++ N
Sbjct: 501 IEEAVGLIKSMPWD-PNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSN 559
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
I A ++ D + R + + K G S +
Sbjct: 560 IYAEAGQWSDMAKARMQMKGTGSQKSAGSSWI 591
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 150/315 (47%), Gaps = 53/315 (16%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
D SK+F+E+P R+ V+WN + +V+ GE+ AR +F+EMP ++ VSW ++DGYT+ +
Sbjct: 206 DASKVFEEMPRRDTVSWNSAMAAMVRQGEVASARRMFDEMPDKDTVSWNTVLDGYTKAGK 265
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
A LF+ M E +++ W
Sbjct: 266 MEDAFELFQCM--------PERNVVS-----W---------------------------- 284
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
+ ++ Y K G I A +F+ + KNLV+WT ++S A +G+ +EA F +M++
Sbjct: 285 STVVSGYCKKGDIEMARVIFDKMPT--KNLVTWTIMVSACAQNGLVEEAGRLFTQMKEAA 342
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
++ + +S+L AC+ G + G K + V ++ +IDM + G + +A
Sbjct: 343 VELDVAAVVSILAACAESGSLALG-KRIHRYVRTRQLGRSTHVCNAMIDMFCKCGCVNRA 401
Query: 244 EKVASGIPSEIT--NVVVWRTLLGACSFHGNVEMGERVTRKILEME-RGYGGDYVLMYNI 300
+ V +EI + V W T++G + HG+ G++ +M+ +G+ D V M N+
Sbjct: 402 DYV---FDTEIAEKDSVSWNTIIGGFAMHGH---GDKALDFFAQMKLQGFRPDAVTMINV 455
Query: 301 LAGVWRYGDAERLRR 315
L+ G E R+
Sbjct: 456 LSACTHMGFVEEGRQ 470
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 130/304 (42%), Gaps = 27/304 (8%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSW--TGIIDGYTRMNRSNGALALFRRMVACEYT 80
+I+ L +R +F P ++ ++ Y + A++LF M
Sbjct: 96 LISSYALQRRLPASRRIFASFPNPQATTFLPNTLLRAYALNALPHAAVSLFSAM-----P 150
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+ T + A+ +G + + +H + K G + +V N LID Y+K G A
Sbjct: 151 QRDSFTYSFLIKALSSSG-LTPLRAVHSHVVKLG-SIEDTYVGNALIDAYSKNGGFLDAS 208
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
K+FE++ R++ VSW S ++ G A F+ M + V++ +VL+ +
Sbjct: 209 KVFEEMP--RRDTVSWNSAMAAMVRQGEVASARRMFDEMP----DKDTVSWNTVLDGYTK 262
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
G +E+ + F M E ++ + ++ + G +E A + +P++ N+V W
Sbjct: 263 AGKMEDAFELFQCMPER-----NVVSWSTVVSGYCKKGDIEMARVIFDKMPTK--NLVTW 315
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGD---AERLRRVV 317
++ AC+ +G VE R+ ++ E D + +ILA G +R+ R V
Sbjct: 316 TIMVSACAQNGLVEEAGRLFTQM--KEAAVELDVAAVVSILAACAESGSLALGKRIHRYV 373
Query: 318 DERN 321
R
Sbjct: 374 RTRQ 377
>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 849
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 116/326 (35%), Positives = 193/326 (59%), Gaps = 6/326 (1%)
Query: 7 KLFDELP-ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 65
KL D+L ++ N +I+ K ++ A +FE + + +VSW +I GY + R N
Sbjct: 401 KLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRIN 460
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
A+ F +M + +P T+++V PA+ + + + IHG + + ++ V+
Sbjct: 461 EAIDYFCKM-QLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDK-NVFVATA 518
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
L+D YAKCG + +A KLF+ ++ +++ +W ++I G+ HG+GK A+E FE+M+K V+K
Sbjct: 519 LVDMYAKCGAVHTARKLFD--MMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIK 576
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN VTFL VL+ACSH GLVEEG ++F M ++ + P + HYG ++D+LGRA RL +A
Sbjct: 577 PNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWD 636
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
+P E + V+ +LGAC H NVE+GE+ +I +++ GG +VL+ NI A
Sbjct: 637 FIQKMPIE-PAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATAS 695
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
+ R+R ++++ K PG S+V
Sbjct: 696 MWDKVARVRTTMEKKGIQKTPGWSVV 721
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 147/276 (53%), Gaps = 11/276 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDG 57
L+ G ++ +L + +TG+V K +E A +F+ MP R++V W II G
Sbjct: 191 LRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISG 250
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
Y + AL L RM E P ITI+++ PA+ G +R + IHGY + GF +
Sbjct: 251 YAQNGFGKTALELVLRMQE-EGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFES 309
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
F ++VS L+D Y+KCG + +A +F+ ++ K +VSW S+I G+ +G A+E F+
Sbjct: 310 F-VNVSTALVDMYSKCGSVGTARLIFDRMT--GKTVVSWNSMIDGYVQNGDPGAAMEIFQ 366
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
+M ++ VT + L+AC+ G VE+G +F K++++ E+ D+ LI M +
Sbjct: 367 KMMDEQVEMTNVTVMGALHACADLGDVEQG-RFVHKLLDQLELGSDVSVMNSLISMYSKC 425
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
R++ A ++ + + +V W ++ + +G +
Sbjct: 426 KRVDIAAEIFENLQHK--TLVSWNAMILGYAQNGRI 459
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 138/315 (43%), Gaps = 44/315 (13%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
+++ K+G L A +F+ + + + ++ GY R + + A++ F RM + P
Sbjct: 115 LVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRM-RYDGVRP 173
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
+ N D+R + IH GF A ++ +++ YAKC + A K+
Sbjct: 174 VVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGF-ASNVFAMTGVVNMYAKCRLVEEAYKM 232
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202
F+ + ++LV W +IISG+A +G GK A+E RMQ+ +P+ +T +S+L A + G
Sbjct: 233 FD--RMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVG 290
Query: 203 LVEEGLKFFD-KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE----------------- 244
+ G M E ++ L+DM + G + A
Sbjct: 291 SLRIGRSIHGYSMRAGFESFVNVS--TALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSM 348
Query: 245 ---KVASGIPS--------------EITNVVVWRTLLGACSFHGNVEMGERVTRKILEME 287
V +G P E+TNV V L AC+ G+VE G V + + ++E
Sbjct: 349 IDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGA-LHACADLGDVEQGRFVHKLLDQLE 407
Query: 288 RGYGGDYVLMYNILA 302
G D +M ++++
Sbjct: 408 --LGSDVSVMNSLIS 420
>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
Length = 603
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 120/329 (36%), Positives = 192/329 (58%), Gaps = 15/329 (4%)
Query: 7 KLFDEL--PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
+LFDE+ RN VTWN MI+ ++ G+L+ AR LF MP RNVV+W +I GY + +S
Sbjct: 157 RLFDEMLGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQS 216
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS- 123
A+ LF+ M+ + P E+T+++V A G + + + + N + +S
Sbjct: 217 AMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTE---NQIKLSISG 273
Query: 124 -NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
N +I Y++CG + A ++F++++ +++VS+ ++ISGFA HG G EA+ M++
Sbjct: 274 HNAMIFMYSRCGSMEDAKRVFQEMAT--RDVVSYNTLISGFAAHGHGVEAINLMSTMKEG 331
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
++P+RVTF+ VL ACSH GL+EEG K F+ + + P I HY C++D+LGR G LE
Sbjct: 332 GIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELED 386
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302
A++ +P E + V+ +LL A H VE+GE K+ E+E G+++L+ NI A
Sbjct: 387 AKRTMERMPME-PHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYA 445
Query: 303 GVWRYGDAERLRRVVDERNALKFPGRSLV 331
R+ D ER+R + + K G S V
Sbjct: 446 SAGRWKDVERIREAMKKGGVKKTTGWSWV 474
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 131/266 (49%), Gaps = 45/266 (16%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFD +PERN++TW M+TG K +LE AR F+ MP R+VVSW ++ GY + + A
Sbjct: 96 LFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEA 155
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LF M+ G RN N +I
Sbjct: 156 LRLFDEML----------------------GAYRNSV-----------------TWNAMI 176
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKP 186
Y + G + SA KLF ++ +N+V+W S+I+G+A +G A+E F+ M L P
Sbjct: 177 SAYMRVGDLDSARKLFN--TMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTP 234
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ VT +SV++AC H G +E G + + + E ++ I + +I M R G +E A++V
Sbjct: 235 DEVTMVSVISACGHLGALELG-NWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRV 293
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGN 272
+ + +VV + TL+ + HG+
Sbjct: 294 FQEMATR--DVVSYNTLISGFAAHGH 317
>gi|218186297|gb|EEC68724.1| hypothetical protein OsI_37217 [Oryza sativa Indica Group]
Length = 387
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 122/325 (37%), Positives = 191/325 (58%), Gaps = 8/325 (2%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
++ +P RNL WN I V+ G ++ A +F EMP R+ VSW +I GYT++ +
Sbjct: 66 ADRVSQAMPVRNLSWWNAEIARNVRIGYMDEAARIFSEMPERDAVSWNSLISGYTKLGKY 125
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
AL +F+ M +P+E+T++ V A + G + IH + +G A + V N
Sbjct: 126 TQALGIFQEMQE-NGIQPTELTLVLVLGACAKIGKLDLGTNIHRNLQNKGIVADGL-VGN 183
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LID YAKCG + A K+F+ +S+ +++ W ++I GF++HG +EA+E F+ M+ +
Sbjct: 184 ALIDMYAKCGMLDLAKKVFDRMSM--RDITCWNAMIVGFSVHGCSREALELFDSMK---I 238
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
+PN VTFL VL ACSHGGLV EG K+F+ M+E+ ++P +KHYGC+IDML R G++E+A
Sbjct: 239 EPNPVTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPYVKHYGCMIDMLCRYGKIEEAY 298
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+ PS ++ V+W+ LL AC HG++++ ++ E+ G V + N+ A
Sbjct: 299 LMIKENPSTASS-VLWKMLLAACRVHGHIDLAYMFFHELRELILTDNGGLVTISNVYAEA 357
Query: 305 WRYGDAERLRRVVDERNALKFPGRS 329
R+ D E LR V +ALK S
Sbjct: 358 KRWDDVEHLRMKVRCNSALKHAAHS 382
>gi|449463559|ref|XP_004149501.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
gi|449511944|ref|XP_004164096.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
Length = 566
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 124/315 (39%), Positives = 182/315 (57%), Gaps = 10/315 (3%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I K E A +FE + +++ SW II + + + +G L LF +M+
Sbjct: 214 NALIDMYGKCKHTEDALMIFEMINEKDLFSWNSIISAHEQCDDHDGTLRLFGKMLGSRVL 273
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGY----GEKRGFNAFHIHVSNCLIDTYAKCGCI 136
P ITI AV PA + + + IHGY G + N + ++N ++D YAKCGC+
Sbjct: 274 -PDVITITAVLPACSHLAALMHGREIHGYMIVNGLGKNENGDDVLLNNAIMDMYAKCGCM 332
Query: 137 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLN 196
+A +F+ + K++ SW +I G+AMHG G EA++ F RM + +KP+ VTF+ VL+
Sbjct: 333 KNADIIFD--LMRNKDVASWNIMIMGYAMHGYGTEALDMFHRMCEAQIKPDVVTFVGVLS 390
Query: 197 ACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256
ACSH G V +G F +M E V+P I+HY C+IDMLGRAG L +A +A IP E N
Sbjct: 391 ACSHAGFVHQGRSFLTRMELEFGVIPTIEHYTCIIDMLGRAGHLGEAYDLAQRIPLE-DN 449
Query: 257 VVVWRTLLGACSFHGNVEMGERVTRKILEMERGY--GGDYVLMYNILAGVWRYGDAERLR 314
+++W LLGAC HGN E+G V KI ++E + G Y+LM ++ V RY +A +R
Sbjct: 450 LILWMALLGACRLHGNAELGNVVGEKITQLEPKHCGSGSYILMSSLYGVVGRYEEALEVR 509
Query: 315 RVVDERNALKFPGRS 329
R + E+N K PG S
Sbjct: 510 RTMKEQNVKKTPGCS 524
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 131/268 (48%), Gaps = 10/268 (3%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LF E N+ + ++ +K E A +FEE+P R+VV W +I+GYT++ N A
Sbjct: 100 LFKMGLELNVFVGSALVNTYLKVDGTEDAEKVFEELPERDVVLWNAMINGYTKIGHLNKA 159
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
+ +F+RM E S T ++ + GD+ N + IHG K G+++ + VSN LI
Sbjct: 160 VVVFKRM-GEEGISLSRFTTTSILSILTSMGDINNGRAIHGIVTKMGYSSC-VAVSNALI 217
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y KC AL +FE I+ K+L SW SIIS + F +M + P+
Sbjct: 218 DMYGKCKHTEDALMIFEMIN--EKDLFSWNSIISAHEQCDDHDGTLRLFGKMLGSRVLPD 275
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMV----EECEVLPDIKHYGCLIDMLGRAGRLEQA 243
+T +VL ACSH + G + M+ + E D+ ++DM + G ++ A
Sbjct: 276 VITITAVLPACSHLAALMHGREIHGYMIVNGLGKNENGDDVLLNNAIMDMYAKCGCMKNA 335
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHG 271
+ + + ++ +V W ++ + HG
Sbjct: 336 DIIFDLMRNK--DVASWNIMIMGYAMHG 361
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 82/168 (48%), Gaps = 23/168 (13%)
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
LI+ Y++C + A+ +F D ER N+ ++ +II+GF +G+ + + ++RM+ V +
Sbjct: 16 LINMYSRCNQMEEAVLVFRDPYHER-NVFAYNAIIAGFVANGLAADGFQFYKRMRSVGVM 74
Query: 186 PNRVTFLSVLNACS--------HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
P++ TF V+ AC HG L + GL+ ++ L++ +
Sbjct: 75 PDKFTFPCVVRACCEFMEVRKIHGCLFKMGLEL------------NVFVGSALVNTYLKV 122
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
E AEKV +P +VV+W ++ + G++ V +++ E
Sbjct: 123 DGTEDAEKVFEELPER--DVVLWNAMINGYTKIGHLNKAVVVFKRMGE 168
>gi|414885893|tpg|DAA61907.1| TPA: hypothetical protein ZEAMMB73_945776 [Zea mays]
Length = 584
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 115/332 (34%), Positives = 194/332 (58%), Gaps = 4/332 (1%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVK-WGELEYARSLFEEMPCRNVVSWTGIIDGYT 59
L ++FD + ++V WN ++ G + G+ + R F MP R+ VSW ++
Sbjct: 126 MLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDEDLLRDFFARMPSRDSVSWNTVLSWCV 185
Query: 60 RMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
+ A+A+FR M+A + +P +T+++V AI G + + H Y ++
Sbjct: 186 VNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAHGLWAHAYVFRKCIEV-E 244
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+S+ LI+ Y+KCG I A+ +F+++ +R +L +W ++++GF +G + A+E F RM
Sbjct: 245 EKLSSALINMYSKCGFIEGAVYVFDNVGGKR-SLDTWNAMLAGFTANGYSERALELFTRM 303
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+ L PN++TF +VLNACSHGGLVEEG+K+F +M + PDI HYGC++D+ RAG
Sbjct: 304 ESTRLMPNKITFNTVLNACSHGGLVEEGMKYFQRMSRFYGIEPDIAHYGCMVDLFCRAGM 363
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
E+AE++ +P E + + + LLGAC H N+E+G++V +++E YVL+ N
Sbjct: 364 FEKAEEIIQTMPME-PDASMLKALLGACRTHKNLELGKKVGHRLIEAAANDHAGYVLLSN 422
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
I A +G ++R+++ +R LK PG S V
Sbjct: 423 IYALDGNWGGVHKVRKLMLDRGVLKTPGSSSV 454
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 11/121 (9%)
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 165
+H + KRG A H V L+ YA CG + A ++F+ + ++V+W ++ G+A
Sbjct: 97 LHAHAAKRGLVASHRRVRCRLVHAYAVCGMLPHARRVFDGGT--DNDMVAWNCLLRGYAQ 154
Query: 166 HGMGKEAVEN-FERMQKVVLKPNR--VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP 222
G ++ + + F RM P+R V++ +VL+ C G +E + F +M+ E P
Sbjct: 155 EGGDEDLLRDFFARM------PSRDSVSWNTVLSWCVVNGEYDEAIAVFREMLASQECQP 208
Query: 223 D 223
D
Sbjct: 209 D 209
>gi|356542056|ref|XP_003539487.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g18970-like [Glycine max]
Length = 595
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 119/331 (35%), Positives = 190/331 (57%), Gaps = 16/331 (4%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSN-----GAL 68
E N+V + ++ +R +F+EMP R+ V+W +I GY+ + N AL
Sbjct: 260 ESNIVVPTTKVYFYASNKDIISSRKVFDEMPRRSTVTWNAMITGYSSLKEGNKKYALNAL 319
Query: 69 ALFRRM-VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA-FHIHVSNCL 126
LF M + +P+ TI++V A+ Q G + IHG+ EK + + L
Sbjct: 320 YLFIDMLIDVSGIKPTATTIVSVLSAVSQIGMLETGACIHGFAEKTVCTPEDDVFIGTGL 379
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+D Y+KCGC+ SAL +F ++ +KN+++WT++ +G A+HG GK+++E +M +KP
Sbjct: 380 VDMYSKCGCLDSALSVFWRMN--QKNIMTWTAMTTGLAIHGKGKQSLEVLYKMGAYGVKP 437
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N TF S L+AC HGGLVEEGL+ F +M V+P I+HYGC++D+LGRAG+LE+A
Sbjct: 438 NEATFTSFLSACCHGGLVEEGLQLFLEMKRTFGVMPQIQHYGCIVDLLGRAGKLEEAYDF 497
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG------DYVLMYNI 300
+P + V+WR+LL AC+ HG+V MGE+V + +L++E DY+ + N+
Sbjct: 498 IMQMPIN-PDAVIWRSLLAACNIHGDVVMGEKVGKFLLQLEEWSSAESPKSEDYIALSNV 556
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ D E +R + ++ L G S V
Sbjct: 557 YALAEKWDDVETVRIKMKAKSILNKAGSSAV 587
>gi|125554650|gb|EAZ00256.1| hypothetical protein OsI_22267 [Oryza sativa Indica Group]
Length = 602
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 111/316 (35%), Positives = 190/316 (60%), Gaps = 5/316 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
++V+W M+ GL + G ++ AR +F+ MP RN+VSW +I GY + +R AL +F M
Sbjct: 163 DVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMR 222
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
A E + + A G + + I+ + E+ G ++ ++D Y KCGC
Sbjct: 223 ALG-VEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIE-VDAKLATAVVDMYCKCGC 280
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ A ++F+ S+ + L +W +I GFA+HG +A+E F +M+ + P+ VT L+VL
Sbjct: 281 VDEAWRVFD--SLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVL 338
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
AC+H G V EG ++ + +V + P +HYGC++D+ GRAG+L++A+KV +P +
Sbjct: 339 TACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMD-P 397
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
++ V LLGAC HG+V++GE + ++++++ G YVL+ N+LAG R+ + ++RR
Sbjct: 398 DLAVLGALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRR 457
Query: 316 VVDERNALKFPGRSLV 331
++DERN K GRS++
Sbjct: 458 LMDERNVSKEAGRSVI 473
>gi|255581953|ref|XP_002531775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528611|gb|EEF30631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 115/321 (35%), Positives = 188/321 (58%), Gaps = 5/321 (1%)
Query: 11 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALAL 70
E E N + N MI+G + G ++ AR++F++M ++V SW+ II G T+ ALAL
Sbjct: 147 EFSEENTLAKNSMISGYLSKGHVDKARAMFDQMKAKDVASWSAIITGCTKNGMHTEALAL 206
Query: 71 FRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTY 130
F M+ +T P+E ++++ A G + + IH Y ++ G + I +S LID Y
Sbjct: 207 FEDMMV-SHTLPNESALVSLLSACAHLGALHQGRWIHAYIDRIGAD-MSIRLSTALIDMY 264
Query: 131 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVT 190
AKCG I S K F + R+++V+W +IISGFA++G K+ E FE M + PN V
Sbjct: 265 AKCGDIQSGYKFFRKMP--RRDIVTWGAIISGFAIYGQAKKCFELFEEMLADGIYPNGVI 322
Query: 191 FLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI 250
F+++L+ACSH G VEEG +F++M+ + + P I+HYGC++D+LGRAGRL++AE+ +
Sbjct: 323 FVAILSACSHAGYVEEGKLYFNQMMVDLGIRPSIEHYGCMVDLLGRAGRLKEAEEFIISM 382
Query: 251 PSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDA 310
P E N V+W ++L AC H ++ G R ++E+E G Y L + +A
Sbjct: 383 P-EKPNSVIWGSMLSACRTHNDLNRGSWAFRHLIELEPRSGDRYKLAGLMFGNAGEKQEA 441
Query: 311 ERLRRVVDERNALKFPGRSLV 331
++R++++++ G S +
Sbjct: 442 TKIRKMIEDQGMETTSGSSFI 462
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 116/283 (40%), Gaps = 38/283 (13%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS-NGALALFRRMVACEYTE 81
++ V E+ YARS+FE +P +V + +I G R + L ++ C +
Sbjct: 27 LLESYVTMSEISYARSIFERIPYLDVFVYNTMIRGLMLGKRPYDSLLLFNELLLGC--LK 84
Query: 82 PSEITILAVFPAIWQN-----GDVRNCQ---------------LIHGYGEK--------- 112
P T V A G +CQ LIH Y
Sbjct: 85 PDNYTYTFVLKACSNQKALPEGKQVHCQIIKAGISPNTHIHSSLIHMYTSSGSIVEAECV 144
Query: 113 -RGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKE 171
R F+ + N +I Y G + A +F+ + K++ SW++II+G +GM E
Sbjct: 145 LREFSEENTLAKNSMISGYLSKGHVDKARAMFDQMKA--KDVASWSAIITGCTKNGMHTE 202
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLI 231
A+ FE M PN +S+L+AC+H G + +G ++ ++ I+ LI
Sbjct: 203 ALALFEDMMVSHTLPNESALVSLLSACAHLGALHQG-RWIHAYIDRIGADMSIRLSTALI 261
Query: 232 DMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
DM + G ++ K +P ++V W ++ + +G +
Sbjct: 262 DMYAKCGDIQSGYKFFRKMPRR--DIVTWGAIISGFAIYGQAK 302
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM 43
++ G K F ++P R++VTW +I+G +G+ + LFEEM
Sbjct: 270 IQSGYKFFRKMPRRDIVTWGAIISGFAIYGQAKKCFELFEEM 311
>gi|356565111|ref|XP_003550788.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 478
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 125/336 (37%), Positives = 191/336 (56%), Gaps = 17/336 (5%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FD +P+R++V+WN M+ G V+ + + AR +F+ MPCRNVVSWT ++ G R +S A
Sbjct: 98 VFDGMPQRSVVSWNSMLAGYVRCADFDGARRVFDVMPCRNVVSWTTMVAGCARNGKSRQA 157
Query: 68 LALFRRM-VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEK----RGFNAFHIHV 122
L LF M AC E ++ ++A A + GD++ + IH Y ++ R + + +
Sbjct: 158 LLLFGEMRRAC--VELDQVALVAALSACAELGDLKLGRWIHWYVQQRFVARNWQQPSVRL 215
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
+N LI YA CG + A ++F + + RK+ VSWTS+I FA G+GKEA++ F+ M
Sbjct: 216 NNALIHMYASCGILHEAYQVF--VKMPRKSTVSWTSMIMAFAKQGLGKEALDLFKTMLSD 273
Query: 183 VLK-----PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
+K P+ +TF+ VL ACSH G V+EG + F M + P I+HYGC++D+L RA
Sbjct: 274 GVKVDGVRPDEITFIGVLCACSHAGFVDEGHQIFASMKHTWGISPSIEHYGCMVDLLSRA 333
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERG--YGGDYV 295
G L++A + +P N +W LLG C H N E+ +V K++ G G V
Sbjct: 334 GLLDEARGLIETMPLN-PNDAIWGALLGGCRIHRNSELASQVENKLVPELNGDQAAGYLV 392
Query: 296 LMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
L+ NI A R+ D +R+ + E K PGRS +
Sbjct: 393 LLSNIYAFGQRWQDVITVRQKMIEMGVKKPPGRSWI 428
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215
W +I G+A +AVE + M +P+ T S+L+AC+ GGLV+EG + ++
Sbjct: 9 WNHVIRGYARSHTPWKAVECYTHMVSSKAEPDGFTHSSLLSACARGGLVKEGEQVHATVL 68
Query: 216 EE---CEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
+ V D LI G +E+A V G+P +VV W ++L
Sbjct: 69 VKGYCSNVFVDTS----LITFYAGRGGVERARHVFDGMPQR--SVVSWNSMLA 115
>gi|222640613|gb|EEE68745.1| hypothetical protein OsJ_27435 [Oryza sativa Japonica Group]
Length = 461
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 170/290 (58%), Gaps = 4/290 (1%)
Query: 43 MPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEY-TEPSEITILAVFPAIWQNGDVR 101
MP R+ ++W +I YTR R+ AL LF M E EP ++T + + A G +
Sbjct: 1 MPVRDTIAWNVLITCYTRNRRTKDALKLFDAMRGGENGAEPDDVTCILLLQACTSLGALD 60
Query: 102 NCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 161
+ + Y G+ + V N LI Y KCGC+ A ++F +K++V+W+++IS
Sbjct: 61 FGEKVWEYAVDHGYGG-ELKVRNSLITMYTKCGCVDKAYQVF--CETPKKSVVTWSAMIS 117
Query: 162 GFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVL 221
G A +G GK+A+ FE M + + P+ TF VL+ACSH GLV+EG KFFD M E ++
Sbjct: 118 GLASNGFGKDAISAFEEMGRSGVAPDEQTFTGVLSACSHSGLVDEGFKFFDIMCYEYQLK 177
Query: 222 PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTR 281
P++ HYGC++D++GRAG L+QA ++ + +WRTLLGAC HG++++GERV
Sbjct: 178 PNVHHYGCMVDLMGRAGLLDQAYELVVKDMRVAPDATIWRTLLGACRIHGHIDLGERVIN 237
Query: 282 KILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
++E++ GDYVL+ N A V +G +R+++ E+ PG + V
Sbjct: 238 HLIELKAQQAGDYVLLLNTYAAVEDWGKVAEVRKLMKEKGIQTTPGCTTV 287
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 25/159 (15%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +IT K G ++ A +F E P ++VV+W+ +I G A++ F M
Sbjct: 82 NSLITMYTKCGCVDKAYQVFCETPKKSVVTWSAMISGLASNGFGKDAISAFEEM-GRSGV 140
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI-----------HVSNCLIDT 129
P E T V A +G V GF F I H C++D
Sbjct: 141 APDEQTFTGVLSACSHSGLV-----------DEGFKFFDIMCYEYQLKPNVHHYGCMVDL 189
Query: 130 YAKCGCIFSALKL-FEDISVERKNLVSWTSIISGFAMHG 167
+ G + A +L +D+ V + W +++ +HG
Sbjct: 190 MGRAGLLDQAYELVVKDMRVAPDATI-WRTLLGACRIHG 227
>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 907
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 187/330 (56%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + LF ++P +N V+WN MI+G + GE++ A +FE M RNV+SW +I G+ +
Sbjct: 375 MSEALNLFRQMPVKNAVSWNTMISGYAQAGEMDRATEIFEAMGVRNVISWNSLITGFLQN 434
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL M E +P + T + ++ + +H K G+ +
Sbjct: 435 GLYLDALKSLVLM-GQEGKKPDQSTFACSLSSCANLAALQVGKQLHELILKSGY-INDLF 492
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VSN LI YAKCG + SA K+F+DI E +L+SW S+ISG+A++G EA FE+M
Sbjct: 493 VSNALIAMYAKCGGVQSAEKVFKDI--EGVDLISWNSLISGYALNGYANEAFWAFEQMSS 550
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
P+ VTF+ +L+ACSH GL +G+ F M+E + P +HY CL+D+LGR GRLE
Sbjct: 551 EGTVPDEVTFIGMLSACSHAGLTNQGVDLFKCMIEGFAIEPLAEHYSCLVDLLGRMGRLE 610
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + G+ + N +W +LL AC H N+E+G+ ++LE+E +Y+ + N+
Sbjct: 611 EAFNIVRGMKVK-ANAGLWGSLLAACRVHKNMELGKIAALRLLELEPHNASNYITLSNMH 669
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ D ERLR ++ ER A K PG S +
Sbjct: 670 AEAGRWEDVERLRVLMRERRAGKLPGCSWI 699
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 150/294 (51%), Gaps = 36/294 (12%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ KLFD +P +N+V+WN MI V+ +++ A LF+E P ++ VSWT +I+GY R+ +
Sbjct: 253 EARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLFKETPYKDCVSWTTMINGYVRVGK 312
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNC----------------QLIH 107
+ A ++ +M Y + + T A+ + QNG + +I
Sbjct: 313 LDEAREVYNQM---PYKDVAAKT--ALMSGLIQNGRIDEASQVFSQLNKRDAICWNSMIA 367
Query: 108 GYGE----KRGFNAF-HIHVSNC-----LIDTYAKCGCIFSALKLFEDISVERKNLVSWT 157
GY + N F + V N +I YA+ G + A ++FE + V +N++SW
Sbjct: 368 GYCQSGRMSEALNLFRQMPVKNAVSWNTMISGYAQAGEMDRATEIFEAMGV--RNVISWN 425
Query: 158 SIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE 217
S+I+GF +G+ +A+++ M + KP++ TF L++C++ ++ G K +++ +
Sbjct: 426 SLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSSCANLAALQVG-KQLHELILK 484
Query: 218 CEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ D+ LI M + G ++ AEKV I E +++ W +L+ + +G
Sbjct: 485 SGYINDLFVSNALIAMYAKCGGVQSAEKVFKDI--EGVDLISWNSLISGYALNG 536
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 126/273 (46%), Gaps = 42/273 (15%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ D +LFD++ +RNLV+WN MI G + +E A LF+ M R+ SW +I YTR
Sbjct: 64 VSDARQLFDKMSQRNLVSWNTMIAGYLHNNMVEEAHKLFDLMAERDNFSWALMITCYTRK 123
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH-- 119
A LF E+ + A W +I GY +K F+
Sbjct: 124 GMLEKARELF------------ELVPDKLDTACWN-------AMIAGYAKKGRFDDAEKV 164
Query: 120 --------IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKE 171
+ N ++ Y + G + A+K FE ++ +N+VSW +++GF +
Sbjct: 165 FEKMPVKDLVSYNSMLAGYTQNGKMGLAMKFFERMA--ERNVVSWNLMVAGFVNNCDLGS 222
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLI 231
A E FE+ + PN V+++++L + G + E K FD+M C+ ++ + +I
Sbjct: 223 AWELFEK----IPDPNAVSWVTMLCGFARHGKIVEARKLFDRM--PCK---NVVSWNAMI 273
Query: 232 DMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
+ ++++A K+ P + + V W T++
Sbjct: 274 AAYVQDLQIDEAVKLFKETPYK--DCVSWTTMI 304
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 141/318 (44%), Gaps = 28/318 (8%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + ++F + +N T+N M+T K G + AR LF++M RN+VSW +I GY
Sbjct: 33 IDEAKRVFSNVIHKNHATYNSMVTVFAKNGRVSDARQLFDKMSQRNLVSWNTMIAGYLHN 92
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
N A LF M E + + + G + + + +
Sbjct: 93 NMVEEAHKLFDLM-----AERDNFSWALMITCYTRKGMLEKARELFELVPDK----LDTA 143
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
N +I YAK G A K+FE + V K+LVS+ S+++G+ +G A++ FERM +
Sbjct: 144 CWNAMIAGYAKKGRFDDAEKVFEKMPV--KDLVSYNSMLAGYTQNGKMGLAMKFFERMAE 201
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ + +N C G E F+K+ + P+ + ++ R G++
Sbjct: 202 RNVVSWNLMVAGFVNNCDLGSAWE----LFEKIPD-----PNAVSWVTMLCGFARHGKIV 252
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A K+ +P + NVV W ++ A + ++++ E V L E Y D V ++
Sbjct: 253 EARKLFDRMPCK--NVVSWNAMIAA--YVQDLQIDEAVK---LFKETPY-KDCVSWTTMI 304
Query: 302 AGVWRYGDAERLRRVVDE 319
G R G + R V ++
Sbjct: 305 NGYVRVGKLDEAREVYNQ 322
>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
Length = 497
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 198/363 (54%), Gaps = 38/363 (10%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGE----------------------------- 32
+ D K+F+++PE N+++W +IT V+ GE
Sbjct: 11 VDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVNCVGNSLISMYA 70
Query: 33 ----LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
+E AR F+ + +N+VS+ I+DGY + +S A LF +A S T
Sbjct: 71 RSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNE-IADTGIGISAFTFA 129
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
++ G + + IHG K G+ + + N LI Y++CG I +A ++F ++
Sbjct: 130 SLLSGAASIGAMGKGEQIHGRLLKGGYKSNQC-ICNALISMYSRCGNIEAAFQVFNEM-- 186
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
E +N++SWTS+I+GFA HG A+E F +M + KPN +T+++VL+ACSH G++ EG
Sbjct: 187 EDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQ 246
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
K F+ M +E ++P ++HY C++D+LGR+G L +A + + +P + + +VWRTLLGAC
Sbjct: 247 KHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPL-MADALVWRTLLGACR 305
Query: 269 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGR 328
HGN E+G ILE E Y+L+ N+ A ++ D ++R+ + ERN +K G
Sbjct: 306 VHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGC 365
Query: 329 SLV 331
S +
Sbjct: 366 SWI 368
>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 121/320 (37%), Positives = 183/320 (57%), Gaps = 6/320 (1%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCR--NVVSWTGIIDGYTRMNRSNGALALF 71
E NL N +I K G L AR LF+EM R NVV W +I GY + + + A+ +F
Sbjct: 124 ESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVF 183
Query: 72 RRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYA 131
R M P+++T+++V PA G + + I G+ +R A + + N L D YA
Sbjct: 184 RMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREM-ALGLFLGNALADMYA 242
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191
KCGCI A ++F +E ++++SW+ II G AM+G EA F M KPN V F
Sbjct: 243 KCGCITEARRVFN--KMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVF 300
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
+ +L AC+H GLV++GL F+ M +E V P ++HYGC++D+L RAG L++AE + S +P
Sbjct: 301 MGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMP 360
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
+ NV++W LLG C + + G+RV + ILE++ + G YV + N+ + + R DA
Sbjct: 361 MK-PNVIIWGALLGGCRIYRDSGRGQRVVQHILELDSDHSGSYVYLANVYSSMGRLDDAA 419
Query: 312 RLRRVVDERNALKFPGRSLV 331
+ R + E LK PG S +
Sbjct: 420 KCRLRMRENGVLKTPGCSWI 439
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 121/254 (47%), Gaps = 6/254 (2%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVAC-EYTE 81
+I + A +F + N+ + + + + A+ F V+
Sbjct: 30 LIGACADHANVRQAALIFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPN 89
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
P E T +V A V N Q IH K+GF + ++ V N LID Y K G + A
Sbjct: 90 PDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFES-NLFVRNSLIDMYFKAGYLLLARH 148
Query: 142 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV-VLKPNRVTFLSVLNACSH 200
LF+++ V +N+V W ++I+G+A + +A+E F MQ+ + PN VT +SVL AC+H
Sbjct: 149 LFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAH 208
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
G ++ G K+ D + E+ + L DM + G + +A +V + + E +V+ W
Sbjct: 209 LGALDLG-KWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKM--EERDVISW 265
Query: 261 RTLLGACSFHGNVE 274
++ + +G+ +
Sbjct: 266 SIIICGLAMYGHAD 279
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 114/316 (36%), Positives = 184/316 (58%), Gaps = 6/316 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL N +I K G +E AR +F ++P +++VSW +I GY++ + N AL LF M
Sbjct: 706 NLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQ 765
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
+ +P +IT+ V PA + + IHG+ +RG+ + +HV+ L+D YAKCG
Sbjct: 766 --KQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFS-DLHVACALVDMYAKCGL 822
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ A LF+ I +K+L+SWT +I+G+ MHG G EA+ F M+ ++P+ +F +L
Sbjct: 823 LVLAQLLFDMIP--KKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVIL 880
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
NACSH GL+ EG KFF+ M EC V P ++HY C++D+L R G L +A K +P +
Sbjct: 881 NACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIK-P 939
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
+ +W LL C H +V++ E+V I E+E YV++ N+ A ++ + ++LR+
Sbjct: 940 DTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRK 999
Query: 316 VVDERNALKFPGRSLV 331
+ +R + PG S +
Sbjct: 1000 RMQKRGFKQNPGCSWI 1015
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 151/302 (50%), Gaps = 12/302 (3%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
N N +I K+G +E A +LF+E+ +VVSW +I+G S L +F +M+
Sbjct: 504 NTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQML 563
Query: 76 ACEYTEPSEITILAVFPAIWQN-GDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
E T+++V A W N G++ + +HG+G K F+ + SN L+D Y+KCG
Sbjct: 564 ILG-VEVDLTTLVSVLVA-WANIGNLSLGRALHGFGVKACFSE-EVVFSNTLLDMYSKCG 620
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
+ A ++F + + +VSWTS I+ + G+ +A+ F+ MQ ++P+ T S+
Sbjct: 621 NLNGATEVF--VKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSI 678
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
++AC+ +++G +++ + ++ LI+M + G +E+A V S IP +
Sbjct: 679 VHACACSSSLDKGRDVHSYVIKN-GMGSNLPVTNALINMYAKCGSVEEARLVFSKIP--V 735
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLR 314
++V W T++G + + L+M++ + D + M +L ++ R
Sbjct: 736 KDIVSWNTMIGG---YSQNSLPNEALELFLDMQKQFKPDDITMACVLPACAGLAALDKGR 792
Query: 315 RV 316
+
Sbjct: 793 EI 794
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 119/244 (48%), Gaps = 17/244 (6%)
Query: 28 VKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM-----VACEYTEP 82
V G+L R +F+++ V W ++ Y ++ +++LF++M V YT
Sbjct: 415 VNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYT-- 472
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
+L F A+ G V+ C+ +HGY K GF + + V N LI Y K G + SA L
Sbjct: 473 -FTCVLKCFAAL---GKVKECKRVHGYVLKLGFGS-NTAVVNSLIAAYFKFGGVESAHNL 527
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202
F+++S ++VSW S+I+G ++G +E F +M + ++ + T +SVL A ++ G
Sbjct: 528 FDELS--EPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIG 585
Query: 203 LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
+ G V+ C ++ L+DM + G L A +V + T +V W +
Sbjct: 586 NLSLGRALHGFGVKAC-FSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGD--TTIVSWTS 642
Query: 263 LLGA 266
+ A
Sbjct: 643 TIAA 646
>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 850
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 122/322 (37%), Positives = 185/322 (57%), Gaps = 9/322 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYTRMNRSNGALALF 71
+ N+V N +I K +++ AR++F+ + R+VV+WT +I GY++ +N AL L
Sbjct: 405 DENMVI-NQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELL 463
Query: 72 RRMVA--CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDT 129
M C+ T P+ TI A +R + IH Y + NA + VSNCLID
Sbjct: 464 SEMFEEDCQ-TRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDM 522
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
YAKCG I A +F+++ KN V+WTS+++G+ MHG G+EA+ F+ M+++ K + V
Sbjct: 523 YAKCGSISDARLVFDNMMA--KNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGV 580
Query: 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
T L VL ACSH G++++G+++F++M V P +HY CL+D+LGRAGRL A ++
Sbjct: 581 TLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEE 640
Query: 250 IPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGD 309
+P E VVW L C HG VE+GE KI E+ + G Y L+ N+ A R+ D
Sbjct: 641 MPME-PPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKD 699
Query: 310 AERLRRVVDERNALKFPGRSLV 331
R+R ++ + K PG S V
Sbjct: 700 VTRIRSLMRHKGVKKRPGCSWV 721
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 137/311 (44%), Gaps = 44/311 (14%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
N+ N ++ + L AR +F+EM +VVSW II+ Y ++ + AL +F RM
Sbjct: 161 NVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMT 220
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF--NAFHIHVSNCLIDTYAKC 133
P IT++ V P G + +H + N F V NCL+D YAKC
Sbjct: 221 NEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMF---VGNCLVDMYAKC 277
Query: 134 G------CIFS-------------------------ALKLFEDISVER--KNLVSWTSII 160
G +FS A++LFE + E+ ++V+W++ I
Sbjct: 278 GMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAI 337
Query: 161 SGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEV 220
SG+A G+G EA+ +M +KPN VT +SVL+ C+ G + G + ++
Sbjct: 338 SGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPID 397
Query: 221 LPDIKH------YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
L H LIDM + +++ A + + + +VV W ++G S HG+
Sbjct: 398 LRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDAN 457
Query: 275 MGERVTRKILE 285
+ ++ E
Sbjct: 458 KALELLSEMFE 468
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 141/330 (42%), Gaps = 48/330 (14%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
+N+ N ++ K G ++ A ++F M ++VVSW ++ GY+++ R A+ LF +M
Sbjct: 262 QNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKM 321
Query: 75 ----------------------------------VACEYTEPSEITILAVFPAIWQNGDV 100
+ +P+E+T+++V G +
Sbjct: 322 QEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGAL 381
Query: 101 RNCQLIHGYGEK------RGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 154
+ + IH Y K + + V N LID YAKC + +A +F+ +S + +++V
Sbjct: 382 MHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVV 441
Query: 155 SWTSIISGFAMHGMGKEAVENFERM--QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
+WT +I G++ HG +A+E M + +PN T L AC+ + G +
Sbjct: 442 TWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHA 501
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
+ + + CLIDM + G + A V + ++ N V W +L+ HG
Sbjct: 502 YALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAK--NEVTWTSLMTGYGMHG- 558
Query: 273 VEMGERVTRKILEMER-GYGGDYVLMYNIL 301
GE EM R G+ D V + +L
Sbjct: 559 --YGEEALGIFDEMRRIGFKLDGVTLLVVL 586
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 89/233 (38%), Gaps = 32/233 (13%)
Query: 80 TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSA 139
T EIT P I + + +LIH + F +++++ LI TY GC+ A
Sbjct: 25 TSAPEITP----PFIHKCKTISQVKLIHQ--KLLSFGILTLNLTSHLISTYISVGCLSHA 78
Query: 140 LKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS 199
+ L + W S+I + +G + + F M + P+ TF V AC
Sbjct: 79 VSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACG 138
Query: 200 HGGLVEEGLKFFDKMVEECEVLPDIKHY-------GCLIDMLGRAGRLEQAEKVASGIPS 252
V G E L + + L+ M R L A KV +
Sbjct: 139 EISSVRCG--------ESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEM-- 188
Query: 253 EITNVVVWRTLLGACSFHGN----VEMGERVTRKILEMERGYGGDYVLMYNIL 301
+ +VV W +++ + + G +EM R+T E G D + + N+L
Sbjct: 189 SVWDVVSWNSIIESYAKLGKPKVALEMFSRMTN-----EFGCRPDNITLVNVL 236
>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
Length = 924
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 121/318 (38%), Positives = 188/318 (59%), Gaps = 5/318 (1%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E + +++ + G+ AR LF+ M +N+VSW +I GY++ +LALFR+
Sbjct: 483 ETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRK 542
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
++ E + EI I++VF A Q +R + HGY K V +ID YAK
Sbjct: 543 SLS-EGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLK-ALQTEDAFVGCSIIDMYAKS 600
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
GCI + K+F+ ++ KN+ SW +II +HG GKEA+E +ERM+KV P+R T++
Sbjct: 601 GCIKESRKVFD--GLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIG 658
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L AC H GLVEEGLK+F +M + P ++HY CLIDML RAGRL+ A ++ + +P E
Sbjct: 659 ILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEE 718
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
N +W +LL +C G +E+GE+V +K+LE+E +YVL+ N+ AG+ ++ R+
Sbjct: 719 ADN-RIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRV 777
Query: 314 RRVVDERNALKFPGRSLV 331
R+++ E K G S +
Sbjct: 778 RQMMKEIGLQKDAGCSWI 795
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 120/239 (50%), Gaps = 7/239 (2%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW 95
+R +F+ M +N++ W ++ GYTR + +F +V+ +P T +V A
Sbjct: 98 SRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACG 157
Query: 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 155
DVR ++IHG K G + V N L+ Y KCG + A+K+F+ + NLVS
Sbjct: 158 GILDVRLGEVIHGMVIKMGL-VLDVFVGNALVGMYGKCGAVDEAMKVFD--FMPETNLVS 214
Query: 156 WTSIISGFAMHGMGKEAVENF-ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKM 214
W S+I F+ +G +++ + E + + L P+ VT +++L C+ G V+ G+
Sbjct: 215 WNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLA 274
Query: 215 VEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
V + + ++ ++ M + G L +A+ S + + NVV W T++ A S G+V
Sbjct: 275 V-KLGLSEEVMVNNAMVYMYSKCGYLNEAQ--MSFVKNNNKNVVSWNTMISAFSLEGDV 330
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 114/254 (44%), Gaps = 9/254 (3%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ K G ++ A +F+ MP N+VSW +I ++ S + L M+ E
Sbjct: 185 NALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGL 244
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P +T++ + P G+V IHG K G + + V+N ++ Y+KCG + A
Sbjct: 245 LPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSE-EVMVNNAMVYMYSKCGYLNEAQ 303
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM--QKVVLKPNRVTFLSVLNAC 198
F + KN+VSW ++IS F++ G EA + M Q +K N VT L+VL AC
Sbjct: 304 MSF--VKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPAC 361
Query: 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
+ + C ++ I + G L AEKV GI + V
Sbjct: 362 LDKLQLRSLKELHGYSFRHC--FQHVELSNAFILAYAKCGALNSAEKVFHGIGDK--TVS 417
Query: 259 VWRTLLGACSFHGN 272
W L+G + +G+
Sbjct: 418 SWNALIGGHAQNGD 431
>gi|21952815|dbj|BAC06231.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125572862|gb|EAZ14377.1| hypothetical protein OsJ_04297 [Oryza sativa Japonica Group]
gi|215697551|dbj|BAG91545.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 548
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 121/336 (36%), Positives = 192/336 (57%), Gaps = 14/336 (4%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++ +LF+++P RN W+ M+TG K G + A+++F+++P RN+V+W +I GY +M
Sbjct: 201 METARELFNKMPARNAFVWSSMVTGNFKAGNADEAQAVFDKIPVRNLVNWNALIAGYAKM 260
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY--GEKRGFNAFH 119
AL F M+ + +P E T+ V A Q G + + +H + + N F
Sbjct: 261 GCCEKALEAFHSMLK-DKIKPDEFTMAGVLSACAQLGSLEQARKVHNFIIQHRIRKNQF- 318
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
V N L+D +AKCG + A +F+++ + +N W S+IS + HG EA+ F +M
Sbjct: 319 --VMNGLVDMFAKCGDLAFARNIFDNM--QWRNTECWNSMISALSSHGQSIEAIRLFSKM 374
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+ KPN +T L+VL AC+HGG V+EGL+ F K + V ++HYGCL+D+LGR+GR
Sbjct: 375 ECSEQKPNEITLLAVLGACTHGGFVDEGLRIFSKF-DIYGVAAAVEHYGCLVDLLGRSGR 433
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME----RGYGGDYV 295
L +A ++ + E N V+W +LLGAC HG+ EM E V+ +I ++ +Y+
Sbjct: 434 LREAYEIVKNMLVE-PNEVIWGSLLGACRVHGDAEMSELVSSEIHQLHSRRVSTNDAEYI 492
Query: 296 LMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
L+ NI+A R+ AER+RR + K PG S V
Sbjct: 493 LLSNIMASSERWEQAERMRRKMALHGVGKTPGCSSV 528
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 128/273 (46%), Gaps = 15/273 (5%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L D ++FD + +RN VT N M+ G G++ A +LF M R V+W +I G+
Sbjct: 105 LLADARRVFDGMLDRNAVTCNAMLAGYAAAGDMVSAEALFAGMGSRTPVTWATLIRGFA- 163
Query: 61 MNRSNGALALFRR-MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
G +A RR A + +T A GD+ + + + + NAF
Sbjct: 164 ---GKGDMAETRRWFEAMPLGMQNVVTWTVAVQAYVAAGDMETAREL--FNKMPARNAF- 217
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
V + ++ K G A +F+ I V +NLV+W ++I+G+A G ++A+E F M
Sbjct: 218 --VWSSMVTGNFKAGNADEAQAVFDKIPV--RNLVNWNALIAGYAKMGCCEKALEAFHSM 273
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
K +KP+ T VL+AC+ G +E+ K + +++ + + L+DM + G
Sbjct: 274 LKDKIKPDEFTMAGVLSACAQLGSLEQARKVHNFIIQH-RIRKNQFVMNGLVDMFAKCGD 332
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
L A + + + N W +++ A S HG
Sbjct: 333 LAFARNIFDNM--QWRNTECWNSMISALSSHGQ 363
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 63/308 (20%), Positives = 113/308 (36%), Gaps = 43/308 (13%)
Query: 38 SLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQN 97
+L+ CR+ W + Y + A ++ +++ + +L A
Sbjct: 11 ALYLTRGCRDPDMWANLAKVYASNSFLREAAIIYSKLLPHRTHHLPLVIVL--LKATASR 68
Query: 98 GDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFED------------ 145
D + +H K NA V L+ Y KCG + A ++F+
Sbjct: 69 ADPVLGRALHAEAVKSA-NAHDRLVGTTLVSVYCKCGLLADARRVFDGMLDRNAVTCNAM 127
Query: 146 ----------ISVE-------RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR 188
+S E + V+W ++I GFA G E FE M + N
Sbjct: 128 LAGYAAAGDMVSAEALFAGMGSRTPVTWATLIRGFAGKGDMAETRRWFEAMP--LGMQNV 185
Query: 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
VT+ + A G +E + F+KM + + ++ +AG ++A+ V
Sbjct: 186 VTWTVAVQAYVAAGDMETARELFNKMPARNAFV-----WSSMVTGNFKAGNADEAQAVFD 240
Query: 249 GIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
IP + N+V W L+ + G E +L+ + D M +L+ + G
Sbjct: 241 KIP--VRNLVNWNALIAGYAKMGCCEKALEAFHSMLKDK--IKPDEFTMAGVLSACAQLG 296
Query: 309 DAERLRRV 316
E+ R+V
Sbjct: 297 SLEQARKV 304
>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
Length = 580
Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 117/327 (35%), Positives = 194/327 (59%), Gaps = 11/327 (3%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+ F L E+++V+WN+++ G K GELE AR F +MPCR++VSW ++ GY
Sbjct: 222 RTFGALKEKDIVSWNMIVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFAS 281
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR--GFNAFHIHVSN 124
L MV E P +T++++ A ++G + + HG+ + +AF + +
Sbjct: 282 VKELIVDMVM-EKVIPDTVTMISLVSAATESGALDQGRWAHGWVIRMQIKLDAF---LGS 337
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LID Y KCG I A ++F++I+ +K++ WT++I+G A HG G +A+E F MQ+ V
Sbjct: 338 ALIDMYCKCGSIERASRVFKEIN--KKDVTVWTTMITGLAFHGYGSKALELFSEMQEDV- 394
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
P+ VTF+SVL+ACSH GLV++G+K F M + + P ++HYGCL+D+L R+GRL +A+
Sbjct: 395 SPDDVTFVSVLSACSHSGLVDQGIKVFSSMTDY-GIEPGVEHYGCLVDLLARSGRLSEAK 453
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+ +P + + +W +L AC G+VE+ E +R++L ++ G Y L+ NI A
Sbjct: 454 DIIDQMPMKPSR-SIWGAMLNACQAQGDVELAEIASRELLNLDPEEEGGYTLLSNIYAAS 512
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
R+ ++++R ++ R K G S V
Sbjct: 513 GRWSYSKKIRETMESRGVKKTAGCSSV 539
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 147/318 (46%), Gaps = 37/318 (11%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I ++ G + A +FE+MP ++VS+ +I GY + A+ LF MV
Sbjct: 102 NTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGL- 160
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN-AFHIHVSNCLIDTYAKCGCIFSA 139
EP E TIL + + Q G+V+ + +HG+ E+R + ++ + N L+D Y KC + A
Sbjct: 161 EPDEFTILGLLVSCGQLGNVKFGKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELA 220
Query: 140 LKLF-----EDI------------------------SVERKNLVSWTSIISGFAMHGMGK 170
L+ F +DI + +++VSW S+++G+A G
Sbjct: 221 LRTFGALKEKDIVSWNMIVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFA 280
Query: 171 EAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCL 230
E M + P+ VT +S+++A + G +++G ++ V ++ D L
Sbjct: 281 SVKELIVDMVMEKVIPDTVTMISLVSAATESGALDQG-RWAHGWVIRMQIKLDAFLGSAL 339
Query: 231 IDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 290
IDM + G +E+A +V I + +V VW T++ +FHG G + EM+
Sbjct: 340 IDMYCKCGSIERASRVFKEINKK--DVTVWTTMITGLAFHG---YGSKALELFSEMQEDV 394
Query: 291 GGDYVLMYNILAGVWRYG 308
D V ++L+ G
Sbjct: 395 SPDDVTFVSVLSACSHSG 412
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 110/244 (45%), Gaps = 12/244 (4%)
Query: 33 LEYARSLFEEM-PCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVF 91
L+ A +LF P N+ + +I ++ + + + L+ +++ P + T+L +
Sbjct: 16 LDLAITLFNHFTPNPNLFIYNTLISAFSSLKKIE-SFYLYNVLLSSGEC-PDKQTLLYLL 73
Query: 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151
A+ + + IH G +F ++ N LI Y + G + A ++FE +
Sbjct: 74 QAV---NFISQVKQIHCQAIVTGLFSFG-YLQNTLIKVYLENGLVRLAHQVFEKMP--SP 127
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
++VS+ +I G+A G G EA+ F M + L+P+ T L +L +C G V+ G
Sbjct: 128 DIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVH 187
Query: 212 DKMVEECEVLPDIKHYG-CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
M + G L+DM + ++E A + + + ++V W ++ C+
Sbjct: 188 GWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEK--DIVSWNMIVAGCAKV 245
Query: 271 GNVE 274
G +E
Sbjct: 246 GELE 249
>gi|414865038|tpg|DAA43595.1| TPA: hypothetical protein ZEAMMB73_741081 [Zea mays]
Length = 400
Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 122/334 (36%), Positives = 195/334 (58%), Gaps = 16/334 (4%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ D S++FDE+P R++V+++ ++T +K L+ R +F++MP R+VVSWT +I Y R
Sbjct: 69 VDDASRVFDEMPVRDVVSFSGLLTAHLKNNHLDSVRMVFDQMPHRDVVSWTAMISAYARA 128
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R ALALF M +P E+T+++V A GD+ + + Y + GF + +
Sbjct: 129 WRPQEALALFDAMT----VQPDEVTMVSVVSACTALGDLETGERLRQYVDSNGF-GWMVS 183
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-- 179
+ N L+D YAKCGC+ A LF+ +++ ++L SW ++IS +A HG + + F M
Sbjct: 184 LRNALMDMYAKCGCLTEARVLFDGMAI--RSLASWNTLISAYASHGDVENTLALFHMMLA 241
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV--EECEVLPDIKHYGCLIDMLGRA 237
+KP+ VT L+VL +H G VEEG FD + + +V I+HYGC++D+L RA
Sbjct: 242 DDNYVKPDGVTLLAVLTVYAHKGCVEEGRTVFDAIERGDYGKVEVTIEHYGCMVDLLSRA 301
Query: 238 GRLEQAEKVAS--GIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV 295
G+L++A K+ IP+ N VVW LLGAC HGN++M E+ +K+ + GG Y+
Sbjct: 302 GQLDEAYKMIEQMSIPN---NDVVWGVLLGACRMHGNIDMAEKAVQKLRILNPHEGGYYI 358
Query: 296 LMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
L+ ++ R +A +RR ++E A K G S
Sbjct: 359 LLIDMYTAAGRTAEAMEIRRTMNETGANKTTGWS 392
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 102/234 (43%), Gaps = 35/234 (14%)
Query: 114 GFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE------------------------ 149
G + H HV N L+ YA + A ++F+++ V
Sbjct: 47 GAGSEHGHVHNALLHAYASRSAVDDASRVFDEMPVRDVVSFSGLLTAHLKNNHLDSVRMV 106
Query: 150 -----RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLV 204
+++VSWT++IS +A +EA+ F+ M ++P+ VT +SV++AC+ G +
Sbjct: 107 FDQMPHRDVVSWTAMISAYARAWRPQEALALFDAM---TVQPDEVTMVSVVSACTALGDL 163
Query: 205 EEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
E G + + V+ + L+DM + G L +A + G+ I ++ W TL+
Sbjct: 164 ETGER-LRQYVDSNGFGWMVSLRNALMDMYAKCGCLTEARVLFDGMA--IRSLASWNTLI 220
Query: 265 GACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVD 318
A + HG+VE + +L + D V + +L G E R V D
Sbjct: 221 SAYASHGDVENTLALFHMMLADDNYVKPDGVTLLAVLTVYAHKGCVEEGRTVFD 274
>gi|449469438|ref|XP_004152427.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 528
Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 192/332 (57%), Gaps = 6/332 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
LK LFD+ +++V W VM+ G K G++E AR LF+EMP RNV+SW+ ++ Y+R+
Sbjct: 162 LKVARVLFDKSSGKDVVVWTVMVDGYGKVGDIESARVLFDEMPERNVISWSAMMAAYSRV 221
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ L LFR+M + P++ I +V A G + +H Y ++ G ++ I
Sbjct: 222 SDFREVLCLFRQMQK-KNIVPNDSVIASVLTACAHLGAITQGLWMHSYAKRYGLDSNPI- 279
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
++ L+D Y+KCG I SAL++FE IS K+ +W ++ISGFAM G +++E F++M
Sbjct: 280 LATALVDMYSKCGYIESALEVFEGIS--NKDAGAWNAMISGFAMTGNVVKSLELFDKMIA 337
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ TF+S+L AC+H +VE GL+FFD+M V P +HY C++D++ RAG +E
Sbjct: 338 SGTQATEATFVSILAACTHAKMVERGLEFFDQMYPVYRVQPQFEHYACVVDLMARAGMVE 397
Query: 242 QAEKVASGIPSEITNVV--VWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
AEK +NV VW +L AC + N+E+G+R+ K+ + GG VL YN
Sbjct: 398 DAEKFVEEKMGGFSNVDANVWGAILSACRQYRNIEIGDRIWTKLSALGLLDGGTQVLSYN 457
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
I + R A+ +R+ E + K PG S++
Sbjct: 458 IFSEAGREMAAKEVRKKFSEARSKKIPGCSVI 489
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 119/271 (43%), Gaps = 35/271 (12%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALF-----RRMVACEYTEPSEITI 87
YA +F+ + RN+ + +I GY A+ + R +A +YT P I
Sbjct: 60 FSYACGIFKNLQQRNIFMYNSMIRGYFLSRFPKQAILCYLDLMDRGFLANKYTFPPLIKA 119
Query: 88 LA-VFPAIWQNGDVRNCQLIHGYGEKRGF---------NAFHIHVSNCL----------- 126
A V+ + + G + + +I E F + F + V+ L
Sbjct: 120 CALVYRELKRIGYLVHAHVIVLGYENDAFVVSALVEFYSLFDLKVARVLFDKSSGKDVVV 179
Query: 127 ----IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
+D Y K G I SA LF+++ +N++SW+++++ ++ +E + F +MQK
Sbjct: 180 WTVMVDGYGKVGDIESARVLFDEMP--ERNVISWSAMMAAYSRVSDFREVLCLFRQMQKK 237
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
+ PN SVL AC+H G + +GL + + + + L+DM + G +E
Sbjct: 238 NIVPNDSVIASVLTACAHLGAITQGL-WMHSYAKRYGLDSNPILATALVDMYSKCGYIES 296
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
A +V GI ++ + W ++ + GNV
Sbjct: 297 ALEVFEGISNK--DAGAWNAMISGFAMTGNV 325
>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 532
Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 121/325 (37%), Positives = 188/325 (57%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
KLFD R+++TW +I G VK G +E+AR LF++MP RN VSW+ +I GY M
Sbjct: 164 KLFDVSTCRDVITWTALINGYVKSGHVEFARELFDQMPERNEVSWSAMITGYVHMGMFRE 223
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL LF + P+ I+ A G + + + IH Y ++ G + + L
Sbjct: 224 ALELFNDL-QLTGLRPNHAGIVGALTACSYLGSLDHGRWIHAYVDRNGTELDRV-LGTAL 281
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+D YAKCGCI A +FE + K+ ++TS+ISG A HG +A++ F RMQ + P
Sbjct: 282 VDMYAKCGCIEIACSVFEKM--PDKDAFAFTSLISGLANHGQSADAIQLFGRMQSEKVIP 339
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N VTF+ VL+ACS GLV+EGL+ F+ M + P ++HYGC++D+LGRAG LE+A+++
Sbjct: 340 NEVTFICVLSACSRMGLVDEGLRIFNCMSVVYGIEPGVQHYGCMVDLLGRAGLLEEAKRL 399
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E + V+ LL +C HG+VE+G+ ++E +GG +VL+ N+ A +
Sbjct: 400 VREMPMEPDSYVL-GALLNSCRVHGDVELGKETVESLVERGLDHGGVHVLLSNMYASSNQ 458
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ ++R+ + + K PG S +
Sbjct: 459 WDWVVKVRKEMGAKKVKKVPGCSSI 483
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 119/277 (42%), Gaps = 31/277 (11%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
KLF LP R WN +I V+ E A SL++ M TG + +N
Sbjct: 65 KLFLSLPHRTTFIWNTIIRIFVEKNENATALSLYKNML------QTGFLP-------NNY 111
Query: 67 ALALFRRMVACEYTEPSEITILA-VFPAIWQNGDVRNCQLIHGYGEKRGFNAFH--IHVS 123
+ R AC P + A V W++ D LIH Y A VS
Sbjct: 112 TFSFVLR--ACTDNSPVGLASHAQVIKLGWESYDFVLNGLIHLYANWSSVEAARKLFDVS 169
Query: 124 NC--------LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
C LI+ Y K G + A +LF+ + +N VSW+++I+G+ GM +EA+E
Sbjct: 170 TCRDVITWTALINGYVKSGHVEFARELFDQM--PERNEVSWSAMITGYVHMGMFREALEL 227
Query: 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
F +Q L+PN + L ACS+ G ++ G ++ V+ D L+DM
Sbjct: 228 FNDLQLTGLRPNHAGIVGALTACSYLGSLDHG-RWIHAYVDRNGTELDRVLGTALVDMYA 286
Query: 236 RAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
+ G +E A V +P + + + +L+ + HG
Sbjct: 287 KCGCIEIACSVFEKMPDK--DAFAFTSLISGLANHGQ 321
>gi|359491588|ref|XP_002281032.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g61800 [Vitis vinifera]
Length = 576
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 121/333 (36%), Positives = 189/333 (56%), Gaps = 10/333 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L ++F+E +++V++N +I G +K G+ + AR LF++MP R+ VSW ++ GY +
Sbjct: 180 LHHACQVFNETSLKDVVSYNALIGGFIKVGDTDRARRLFDKMPIRDAVSWGTLLAGYAQS 239
Query: 62 -NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR--GFNAF 118
+ A+ LF RM+ P I +++ A Q G++ + IH Y ++ NAF
Sbjct: 240 GDLCMDAIQLFNRML-ISTVRPDNIALVSALSACAQLGELEQGKSIHVYIKQNRIPINAF 298
Query: 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER 178
+S L+D YAKCGCI +A ++FE S KNL +W +++ G MHG G ++ F R
Sbjct: 299 ---LSTGLVDLYAKCGCIETAREIFE--SSPDKNLFTWNALLVGLGMHGRGHLSLHYFSR 353
Query: 179 MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
M + +KP+ V+FL +L C H GLV E FF +M V ++KHYGC+ D+LGRAG
Sbjct: 354 MIEAGIKPDGVSFLGILVGCGHAGLVCEARNFFQEMEVVYRVPRELKHYGCMADLLGRAG 413
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMY 298
+ +A ++ +P +V VW +LG C HGNVE+ E+ ++ + G Y +M
Sbjct: 414 LIREAMEMIERMPMG-GDVFVWGGVLGGCRIHGNVEIAEKAAENVMALNPEDDGVYSIMA 472
Query: 299 NILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+I A R+ D R+RR++ R K PG SLV
Sbjct: 473 DIYANAGRWEDVARIRRLMHSRQVKKNPGCSLV 505
>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
Length = 599
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 115/286 (40%), Positives = 172/286 (60%), Gaps = 13/286 (4%)
Query: 50 SWTGIIDGYTRMNRSNGALALFRRM----VACEYTEPSEITILAVFPAIWQNGDVRNCQL 105
SWT +I GY + ++ A+ LF +M V C +E+T++AV A G +
Sbjct: 194 SWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKC-----NEVTVVAVLAACADLGALDLGMR 248
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 165
IH Y + GF ++ +SN LID Y KCGC+ A K+FE++ E + +VSW+++I G AM
Sbjct: 249 IHEYSNRHGFKR-NVRISNTLIDMYVKCGCLEEACKVFEEM--EERTVVSWSAMIGGLAM 305
Query: 166 HGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIK 225
HG +EA+ F M +V ++PN VTF+ +L+ACSH GL+ EG +FF M + ++P I+
Sbjct: 306 HGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIE 365
Query: 226 HYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
HYGC++D+L RAG L +A + +P + N VVW LLGAC H NVEM E + +LE
Sbjct: 366 HYGCMVDLLSRAGLLHEAHEFILNMPMK-PNGVVWGALLGACRVHKNVEMAEEAIKHLLE 424
Query: 286 MERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
++ G YV++ NI A R+ D R+R+ + +R K PG S +
Sbjct: 425 LDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSI 470
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 101/249 (40%), Gaps = 44/249 (17%)
Query: 33 LEYARSLFE--EMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
YA+ +F+ E W + + A+ LF R+ + P T +V
Sbjct: 109 FHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVC-PDTFTCSSV 167
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A D+ N +++HG EK GF
Sbjct: 168 LRACLNLLDLSNGRILHGVVEKVGFR---------------------------------- 193
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
SWTS+I+G+ G KEA+ F +M++ +K N VT ++VL AC+ G ++ G++
Sbjct: 194 ----SWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRI 249
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
+ +++ LIDM + G LE+A KV + E VV W ++G + H
Sbjct: 250 HE-YSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEM--EERTVVSWSAMIGGLAMH 306
Query: 271 GNVEMGERV 279
G E R+
Sbjct: 307 GRAEEALRL 315
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 5/166 (3%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+RN+ N +I VK G LE A +FEEM R VVSW+ +I G R+ AL LF
Sbjct: 259 KRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSD 318
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M EP+ +T + + A G + + + I C++D ++
Sbjct: 319 MSQVG-IEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRA 377
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKEAVENF 176
G + A + ++ + + N V W +++ +H M +EA+++
Sbjct: 378 GLLHEAHEFILNMPM-KPNGVVWGALLGACRVHKNVEMAEEAIKHL 422
>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
Length = 1753
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 119/330 (36%), Positives = 186/330 (56%), Gaps = 13/330 (3%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLF------EEMPC--RNVVSWTGIIDGYT 59
LF E+ +N+V+WN +I+ G + A ++F +E P NVVSW+ +I G+
Sbjct: 1166 LFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFA 1225
Query: 60 RMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
+ AL LFRRM + + + +TI +V + + + IHG+ R +
Sbjct: 1226 SKGQGEEALELFRRMQLAK-VKANSVTIASVLSVCAELAALHLGREIHGH-VVRSLMDGN 1283
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
I V N LI+ Y K G +FE I E K+L+SW ++++G+ +HG+G+ A+ F++M
Sbjct: 1284 ILVGNGLINMYTKSGSFKEGNLVFEKI--ENKDLISWNTMVAGYGIHGLGENAIRTFDQM 1341
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
K +P+ VTF++VL+ACSH GLV EG + FDKM++E V P ++HY C++D+LGRAG
Sbjct: 1342 IKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGL 1401
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
L++A KV +P E N VW LL +C H N E+ E +I + G Y+L+ N
Sbjct: 1402 LQEASKVVKSMPVE-PNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSN 1460
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRS 329
I A R+ D+ ++R + K PG+S
Sbjct: 1461 IYAASGRWEDSAKVRISAKTKGLKKTPGQS 1490
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 94/363 (25%), Positives = 157/363 (43%), Gaps = 56/363 (15%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR----NVVSWTGIIDG 57
+ D K+F+ + R+ V+WN M++G + A +F M N+V+WT ++
Sbjct: 1024 MDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSS 1083
Query: 58 YTRMNRSNGALALFRRM----VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR 113
+ R + + LF RM + + + ++V A + G V IHGY K
Sbjct: 1084 HARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKV-----IHGYVVKG 1138
Query: 114 GFNAF-------------HIHVS-----------------NCLIDTYAKCG------CIF 137
GF + H +V+ N LI +YA G IF
Sbjct: 1139 GFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIF 1198
Query: 138 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197
L+ ++ + R N+VSW+++I GFA G G+EA+E F RMQ +K N VT SVL+
Sbjct: 1199 LQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSV 1258
Query: 198 CSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNV 257
C+ + G + +V + +I LI+M ++G ++ V I E ++
Sbjct: 1259 CAELAALHLGREIHGHVVRSL-MDGNILVGNGLINMYTKSGSFKEGNLVFEKI--ENKDL 1315
Query: 258 VVWRTLLGACSFHGNVEMGERVTRKILEM-ERGYGGDYVLMYNILAGVWRYGDAERLRRV 316
+ W T++ HG +GE R +M + G+ D V +L+ G R +
Sbjct: 1316 ISWNTMVAGYGIHG---LGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGREL 1372
Query: 317 VDE 319
D+
Sbjct: 1373 FDK 1375
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 102/197 (51%), Gaps = 25/197 (12%)
Query: 30 WGELEYARSLFEEMPCR---NVVSWTGIIDGYTRMNRSNG----ALALFRRM-----VAC 77
+G + A+ +FE P N++ W I+ R N ++G AL ++ RM A
Sbjct: 917 FGLVSDAQRVFEVSPIECFSNLLLWNSIL----RANVAHGYCEEALEIYCRMRKLGVSAD 972
Query: 78 EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIF 137
+T P I A+ G + C+ +HG+ + GF +++HV N L+ Y K G +
Sbjct: 973 GFTFPLVIRACALM------GSRKLCRSVHGHVVEMGFQ-WNLHVGNELMGMYGKIGRMD 1025
Query: 138 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197
A K+FE ++V ++ VSW +++SG+A++ A E F M L+PN VT+ S+L++
Sbjct: 1026 DARKVFERMAV--RSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSS 1083
Query: 198 CSHGGLVEEGLKFFDKM 214
+ G E ++ F +M
Sbjct: 1084 HARCGQHVETMELFGRM 1100
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 33/165 (20%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
K+G+ +F+++ ++L++WN M+ G G E A F++M I DG+
Sbjct: 1300 FKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQM----------IKDGF--- 1346
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
EP +T +AV A G V + + K +
Sbjct: 1347 -------------------EPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQME 1387
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 166
C++D + G + A K+ + + VE N W ++++ MH
Sbjct: 1388 HYACMVDLLGRAGLLQEASKVVKSMPVE-PNACVWGALLNSCRMH 1431
>gi|242049708|ref|XP_002462598.1| hypothetical protein SORBIDRAFT_02g028755 [Sorghum bicolor]
gi|241925975|gb|EER99119.1| hypothetical protein SORBIDRAFT_02g028755 [Sorghum bicolor]
Length = 655
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/316 (33%), Positives = 186/316 (58%), Gaps = 3/316 (0%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ + +WN ++ L++ G + AR LF++MP R+ VSW+ +I GY + RS+ AL LF
Sbjct: 340 KSHTASWNALLAALLRKGLIHEARELFDDMPERDTVSWSTMISGYVQTGRSDMALELFYS 399
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M+ EP+E+T+ + AI +G + + IH + R ++S LID YAK
Sbjct: 400 MLNTS-VEPNEVTLASALSAIADSGTLDQGKWIHDHIMNRPIQ-LTDNLSAGLIDMYAKR 457
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + A++ F S + ++ W ++I A+HG +++ F ++Q+ +KPN +TF+
Sbjct: 458 GSVADAVQFFNCASDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKPNSITFIG 517
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VL+AC H G+V +G +F+ M E + P IKHYGC++D+LGRAG LE+AE++ S +P +
Sbjct: 518 VLSACCHTGMVAKGKYYFEAMTREYGIQPTIKHYGCMVDLLGRAGYLEEAEQLVSMMPMK 577
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
+VV+W ++L A GN+ +GE+ ++ ++++ +G V + NI A + + +
Sbjct: 578 -ADVVIWGSILSAARAQGNIALGEKAAEELAKLDQTHGASKVALSNIYADAGHWTNVSVV 636
Query: 314 RRVVDERNALKFPGRS 329
R+ + + N + GRS
Sbjct: 637 RKELQDENFERLVGRS 652
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 134/305 (43%), Gaps = 35/305 (11%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L +FD + RN VTWN M+ G VK ++ A +F +P R+ VSW +IDGY
Sbjct: 195 LYSARAMFDGMTHRNAVTWNAMLNGYVKAEMIDMAAEVFWRIPERDEVSWLTLIDGYICA 254
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ + A+ + +MV E+ ++ + A + + Q +H K GF+A H
Sbjct: 255 DLISDAMKAYVQMVGEVGANDHEVLLVDLMKACARYSAITEGQQLHTVILKNGFDA-HAF 313
Query: 122 VSNCLIDTYAKC-------------------------------GCIFSALKLFEDISVER 150
V L+ Y C G I A +LF+D+
Sbjct: 314 VQATLVHFYGCCGLIGLAQMAFKLSDKSHTASWNALLAALLRKGLIHEARELFDDM--PE 371
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
++ VSW+++ISG+ G A+E F M ++PN VT S L+A + G +++G
Sbjct: 372 RDTVSWSTMISGYVQTGRSDMALELFYSMLNTSVEPNEVTLASALSAIADSGTLDQGKWI 431
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
D ++ L D G LIDM + G + A + + + ++V W ++ + + H
Sbjct: 432 HDHIMNRPIQLTDNLSAG-LIDMYAKRGSVADAVQFFNCASDKFSSVSPWNAMICSLAIH 490
Query: 271 GNVEM 275
G M
Sbjct: 491 GYAHM 495
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 122/242 (50%), Gaps = 15/242 (6%)
Query: 2 LKDGSKLFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDG 57
L +LFDE P R+ N ++ L + G L+ A+ L +EMP R+ VS+T ++
Sbjct: 59 LASALQLFDETPAPLRDTAARNSVLAALTRAGHLDRAQRLLDEMPRVHRDAVSYTTLVTA 118
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
R + A+A+FR M++ E P+E+T+ A + G +IHG+ KR +
Sbjct: 119 LARAGHAGRAVAVFRGMLS-ENVVPNEVTLAGAIMAFARCGAPATVGMIHGFALKRALDG 177
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
F I +N L+ YA ++SA +F+ ++ +N V+W ++++G+ M A E F
Sbjct: 178 FVIVATN-LVHAYAGVLELYSARAMFDGMT--HRNAVTWNAMLNGYVKAEMIDMAAEVFW 234
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
R+ + + V++L++++ L+ + +K + +MV E H L+D++
Sbjct: 235 RIP----ERDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGA---NDHEVLLVDLMKAC 287
Query: 238 GR 239
R
Sbjct: 288 AR 289
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 120/319 (37%), Positives = 189/319 (59%), Gaps = 9/319 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL N +I K GELE A LFE +P ++V+SW +I GYT MN AL LF+ M+
Sbjct: 300 NLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEML 359
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR---GFNAFHIHVSNCLIDTYAK 132
T P+++T+L++ PA G + + IH Y +KR NA + S LID YAK
Sbjct: 360 RSGET-PNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTS--LIDMYAK 416
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
CG I +A ++F S+ K+L SW ++I GFAMHG + + F RM+K+ ++P+ +TF+
Sbjct: 417 CGDIEAAHQVFN--SILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFV 474
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
+L+ACSH G+++ G F M ++ ++ P ++HYGC+ID+LG +G L + + +
Sbjct: 475 GLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSG-LFKEAEEMINMME 533
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312
+ V+W +LL AC HGNVE+GE ++++E G YVL+ NI A R+ + +
Sbjct: 534 MEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAK 593
Query: 313 LRRVVDERNALKFPGRSLV 331
R +++++ K PG S +
Sbjct: 594 TRALLNDKGMKKVPGCSSI 612
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 150/276 (54%), Gaps = 11/276 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+D K+FD+ P R++V++ +I G G +E A+ LF+E+P ++VVSW +I GY
Sbjct: 185 LEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAET 244
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL LF+ M+ P E T++ V A Q+G + + +H + + GF + ++
Sbjct: 245 GNYKEALELFKDMMKTN-VRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGS-NLK 302
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N LID Y+KCG + +A LFE + K+++SW ++I G+ + KEA+ F+ M +
Sbjct: 303 IVNALIDLYSKCGELETACGLFERLPY--KDVISWNTLIGGYTHMNLYKEALLLFQEMLR 360
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEG---LKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
PN VT LS+L AC+H G ++ G + DK ++ ++ LIDM + G
Sbjct: 361 SGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLR--TSLIDMYAKCG 418
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
+E A +V + I + ++ W ++ + HG +
Sbjct: 419 DIEAAHQVFNSILHK--SLSSWNAMIFGFAMHGRAD 452
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 112/247 (45%), Gaps = 42/247 (17%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
L YA S+F+ + N++ W + G+ + AL L+ M++ P+ T V
Sbjct: 84 LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLL-PNSYTFPFVLK 142
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
+ ++ + Q IHG+ K G + ++V LI Y + G + A K+F+ ++
Sbjct: 143 SCAKSKAFKEGQQIHGHVLKLGCD-LDLYVHTSLISMYVQNGRLEDAHKVFD--KSPHRD 199
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
+VS+T++I G+A G +EN +++ + + V++ ++++ + G +E L+ F
Sbjct: 200 VVSYTALIKGYASRGY----IENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFK 255
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
M++ V PD E T V T++ AC+ G+
Sbjct: 256 DMMKT-NVRPD-----------------------------ESTMV----TVVSACAQSGS 281
Query: 273 VEMGERV 279
+E+G +V
Sbjct: 282 IELGRQV 288
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 7/146 (4%)
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198
A+ +F+ +++ NL+ W ++ G A+ A++ + M + L PN TF VL +C
Sbjct: 87 AISVFK--TIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSC 144
Query: 199 SHGGLVEEGLKFFDKMVE-ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNV 257
+ +EG + +++ C++ D+ + LI M + GRLE A KV P +V
Sbjct: 145 AKSKAFKEGQQIHGHVLKLGCDL--DLYVHTSLISMYVQNGRLEDAHKVFDKSPHR--DV 200
Query: 258 VVWRTLLGACSFHGNVEMGERVTRKI 283
V + L+ + G +E +++ +I
Sbjct: 201 VSYTALIKGYASRGYIENAQKLFDEI 226
>gi|125555946|gb|EAZ01552.1| hypothetical protein OsI_23585 [Oryza sativa Indica Group]
Length = 530
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 191/330 (57%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L++ KLF+++P RN+++W ++++G G+L+ AR LF + ++++ WT +I+ +
Sbjct: 200 LEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQH 259
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL LFR M + EP T++ + G + + IH Y E+R +
Sbjct: 260 GCFEEALTLFRDM-QMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAV- 317
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LID Y+KCG I +L++F ++ ++ +WT+II G A +G A+E F+ MQ+
Sbjct: 318 LGTALIDMYSKCGHIEKSLEVF--WRMQGRDATAWTAIICGLATNGQAGRALELFQDMQR 375
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KP+ VTF+ VL+AC HGGLV+EG K F M E ++ P ++HY CL+++LGRAG L+
Sbjct: 376 SKVKPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLLGRAGLLD 435
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AE++ +P + ++ LL AC HGNVEM ER+T++I E + +LM N+
Sbjct: 436 EAERLIGDVPINKDAMPLFGALLTACKAHGNVEMSERLTKRICEQDSQITDVNLLMSNVY 495
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ D R+R + K G SL+
Sbjct: 496 ATASRWEDVIRVRGKMAHPTVKKTAGCSLI 525
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 122/247 (49%), Gaps = 37/247 (14%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G ++ AR +F+EMP R +V W ++ Y R R + A+AL +M T P +T++
Sbjct: 98 GRVDIARKVFDEMPSRALVLWNMMVRCYIRCGRYSAAVALSEQMERSGVT-PDRVTLVTA 156
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A + D+ + IH Y + F++ V+N L+D Y K C+ A+KLFE +
Sbjct: 157 VTACSRARDLSLGRRIHVYMDN--VFGFNLPVANALLDMYTKNDCLEEAVKLFEQMPA-- 212
Query: 151 KNLVSWTSIISGFAM-------------------------------HGMGKEAVENFERM 179
+N++SWT ++SG+ + HG +EA+ F M
Sbjct: 213 RNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDM 272
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
Q ++P+R T +++L C++ G +++G ++ + E+ ++ D LIDM + G
Sbjct: 273 QMQRVEPDRFTVVTLLTCCANLGALDQG-EWIHQYAEQRKMKIDAVLGTALIDMYSKCGH 331
Query: 240 LEQAEKV 246
+E++ +V
Sbjct: 332 IEKSLEV 338
>gi|356528072|ref|XP_003532629.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Glycine max]
Length = 647
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 193/330 (58%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+++ SKLF E+P ++++WN++++G + G+L A+ FE MP +N++SW II GY +
Sbjct: 322 MEEASKLFREMPIPDVLSWNLIVSGFAQKGDLNLAKDFFERMPLKNLISWNSIIAGYEKN 381
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
GA+ LF RM E P T+ +V ++ + IH K I+
Sbjct: 382 EDYKGAIQLFSRM-QFEGERPDRHTLSSVMSVCTGLVNLYLGKQIHQLVTKIVIPDSPIN 440
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
N LI Y++CG I A +F +I + K++++W ++I G+A HG+ EA+E F+ M++
Sbjct: 441 --NSLITMYSRCGAIVDACTVFNEIKL-YKDVITWNAMIGGYASHGLAAEALELFKLMKR 497
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ + P +TF+SV+NAC+H GLVEEG + F M+ + + ++H+ L+D+LGR G+L+
Sbjct: 498 LKIHPTYITFISVMNACAHAGLVEEGRRQFKSMINDYGIERRVEHFASLVDILGRQGQLQ 557
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + + +P + + VW LL AC H NVE+ ++ +E YVL+YNI
Sbjct: 558 EAMDLINTMPFK-PDKAVWGALLSACRVHNNVELALVAADALIRLEPESSAPYVLLYNIY 616
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + ++ DAE +R +++E+N K G S V
Sbjct: 617 ANLGQWDDAESVRVLMEEKNVKKQAGYSWV 646
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 142/309 (45%), Gaps = 46/309 (14%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
F+++G +LF+ +P+R+ V+WN +I+G K G ++ A LF MP RN VS +I G+
Sbjct: 119 FVEEGRRLFELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMPERNAVSSNALITGFLL 178
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIH---GYGEKRGFNA 117
+ A+ FR M E ++ A+ + +NG++ I G G+
Sbjct: 179 NGDVDSAVDFFRTM-----PEHYSTSLSALISGLVRNGELDMAAGILCECGNGDDD---- 229
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVE-----------RKNLVSWTSIISGFAMH 166
+H N LI Y + G + A +LF+ I + R+N+VSW S++ +
Sbjct: 230 -LVHAYNTLIAGYGQRGHVEEARRLFDGIPDDRGDGDEGQRRFRRNVVSWNSMMMCYVKA 288
Query: 167 GMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH 226
G A E F+RM ++ + ++ ++++ +EE K F +M +PD+
Sbjct: 289 GDIVSARELFDRM----VEQDTCSWNTMISGYVQISNMEEASKLFREM-----PIPDVLS 339
Query: 227 YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC----SFHGNVEM------- 275
+ ++ + G L A+ +P + N++ W +++ + G +++
Sbjct: 340 WNLIVSGFAQKGDLNLAKDFFERMP--LKNLISWNSIIAGYEKNEDYKGAIQLFSRMQFE 397
Query: 276 GERVTRKIL 284
GER R L
Sbjct: 398 GERPDRHTL 406
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 133/301 (44%), Gaps = 65/301 (21%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + LFD + R+ VTWN MITG V E+ AR LF+EMP R+VVSW I+ GY
Sbjct: 55 LSEARALFDSMKHRDTVTWNSMITGYVHRREIARARQLFDEMPRRDVVSWNLIVSGYFSC 114
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R + + RR+ + P R+C
Sbjct: 115 -RGSRFVEEGRRL-------------FELMPQ-------RDC------------------ 135
Query: 122 VS-NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
VS N +I YAK G + ALKLF ++ +N VS ++I+GF ++G AV+ F M
Sbjct: 136 VSWNTVISGYAKNGRMDQALKLFN--AMPERNAVSSNALITGFLLNGDVDSAVDFFRTMP 193
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEG-LKFFDKMVEECEVLPD--IKHYGCLIDMLGRA 237
+ + T LS L + GLV G L ++ EC D + Y LI G+
Sbjct: 194 E-----HYSTSLSALIS----GLVRNGELDMAAGILCECGNGDDDLVHAYNTLIAGYGQR 244
Query: 238 GRLEQAEKVASGIPSE-----------ITNVVVWRTLLGACSFHGNVEMGERVTRKILEM 286
G +E+A ++ GIP + NVV W +++ G++ + +++E
Sbjct: 245 GHVEEARRLFDGIPDDRGDGDEGQRRFRRNVVSWNSMMMCYVKAGDIVSARELFDRMVEQ 304
Query: 287 E 287
+
Sbjct: 305 D 305
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 99/232 (42%), Gaps = 40/232 (17%)
Query: 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
N+ ++ SN I + G + A LF+ S++ ++ V+W S+I+G+ A +
Sbjct: 35 NSSPLNRSNKKISNLIRSGRLSEARALFD--SMKHRDTVTWNSMITGYVHRREIARARQL 92
Query: 176 FERM-QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDML 234
F+ M ++ V+ N + +S +C VEEG + F+ M + D + +I
Sbjct: 93 FDEMPRRDVVSWNLI--VSGYFSCRGSRFVEEGRRLFELMPQR-----DCVSWNTVISGY 145
Query: 235 GRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE--------MGERVTRKI--- 283
+ GR++QA K+ + +P N V L+ +G+V+ M E + +
Sbjct: 146 AKNGRMDQALKLFNAMPER--NAVSSNALITGFLLNGDVDSAVDFFRTMPEHYSTSLSAL 203
Query: 284 ---------LEMERGY-------GGDYVLMYNIL-AGVWRYGDAERLRRVVD 318
L+M G D V YN L AG + G E RR+ D
Sbjct: 204 ISGLVRNGELDMAAGILCECGNGDDDLVHAYNTLIAGYGQRGHVEEARRLFD 255
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 114/314 (36%), Positives = 183/314 (58%), Gaps = 6/314 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL N +I K G +E AR +F ++P +++VSW +I GY++ N AL LF M
Sbjct: 431 NLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQ 490
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
+ +P +IT+ V PA + + IHG+ +RG+ + +HV+ L+D YAKCG
Sbjct: 491 --KQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFS-DLHVACALVDMYAKCGL 547
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ A LF+ I +K+L+SWT +I+G+ MHG G EA+ F M+ ++P+ +F ++L
Sbjct: 548 LVLAQLLFDMIP--KKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAIL 605
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
NACSH GL+ EG KFF+ M EC V P ++HY C++D+L R G L +A K +P +
Sbjct: 606 NACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIK-P 664
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
+ +W LL C H +V++ E+V I E+E YV++ N+ A ++ + ++LR+
Sbjct: 665 DTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRK 724
Query: 316 VVDERNALKFPGRS 329
+ +R + PG S
Sbjct: 725 RMQKRGFKQNPGCS 738
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 153/301 (50%), Gaps = 10/301 (3%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
N N +I K+G +E A +LF+E+ +VVSW +I+G S L +F +M+
Sbjct: 229 NTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQML 288
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
E T+++V A G++ + +HG+G K F+ + SN L+D Y+KCG
Sbjct: 289 ILG-VEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSE-EVVFSNTLLDMYSKCGN 346
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ A ++F + + +VSWTSII+ + G+ +A+ F+ MQ ++P+ T S++
Sbjct: 347 LNGATEVF--VKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIV 404
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+AC+ +++G +++ + ++ LI+M + G +E+A V S IP +
Sbjct: 405 HACACSSSLDKGRDVHSYVIKN-GMGSNLPVTNALINMYAKCGSVEEARLVFSKIP--VK 461
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
++V W T++G + N+ E + L+M++ + D + M +L ++ R
Sbjct: 462 DIVSWNTMIGG--YSQNLLPNEAL-ELFLDMQKQFKPDDITMACVLPACAGLAALDKGRE 518
Query: 316 V 316
+
Sbjct: 519 I 519
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 121/244 (49%), Gaps = 17/244 (6%)
Query: 28 VKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM-----VACEYTEP 82
V G+L R +F+++ V W ++ Y ++ +++LF++M V YT
Sbjct: 140 VNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYT-- 197
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
+L F A+ G V+ C+ +HGY K GF + + V N LI Y K G + SA L
Sbjct: 198 -FTCVLKCFAAL---GKVKECKRVHGYVLKLGFGS-NTAVVNSLIAAYFKFGGVESAHNL 252
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202
F+++S ++VSW S+I+G ++G +E F +M + ++ + T +SVL AC++ G
Sbjct: 253 FDELS--EPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIG 310
Query: 203 LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
+ G V+ C ++ L+DM + G L A +V + T +V W +
Sbjct: 311 NLSLGRALHGFGVKAC-FSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGD--TTIVSWTS 367
Query: 263 LLGA 266
++ A
Sbjct: 368 IIAA 371
>gi|356498922|ref|XP_003518295.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Glycine max]
Length = 682
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 120/318 (37%), Positives = 190/318 (59%), Gaps = 18/318 (5%)
Query: 2 LKDGSKLFDELP-ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L+ K+F++L +N VTWN MI+ + G+L AR LF +MP RN VSW +I GY +
Sbjct: 315 LEVAQKIFEQLGVYKNSVTWNAMISAYARVGDLSLARDLFNKMPERNTVSWNSMIAGYAQ 374
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
S A+ LF+ M++ + ++P E+T+++VF A G +L G + HI
Sbjct: 375 NGESLKAIQLFKEMISSKDSKPDEVTMVSVFSACGHLG-----RLGLGNWAVSILHENHI 429
Query: 121 HVS----NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
+S N LI Y +CG + A F++++ K+LVS+ ++ISG A HG G E+++
Sbjct: 430 KLSISGYNSLIFMYLRCGSMEDARITFQEMAT--KDLVSYNTLISGLAAHGHGTESIKLM 487
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
+M++ + P+R+T++ VL ACSH GL+EEG K F+ + +PD+ HY C+IDMLGR
Sbjct: 488 SKMKEDGIGPDRITYIGVLTACSHAGLLEEGWKVFESI-----KVPDVDHYACMIDMLGR 542
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
G+LE+A K+ +P E + ++ +LL A S H VE+GE K+ ++E G+YVL
Sbjct: 543 VGKLEEAVKLIQSMPME-PHAGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGNYVL 601
Query: 297 MYNILAGVWRYGDAERLR 314
+ NI A R+ D +++R
Sbjct: 602 LSNIYALAGRWKDVDKVR 619
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 100/357 (28%), Positives = 165/357 (46%), Gaps = 43/357 (12%)
Query: 3 KDGSKLFDEL--PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
K+ ++LF + E+N++TW M+TG K LE AR F+EMP R V SW ++ GY +
Sbjct: 182 KEATRLFCMMGESEKNVITWTTMVTGHAKMRNLETARMYFDEMPERRVASWNAMLSGYAQ 241
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+ + LF M++ EP E T + V + GD + I ++ F + +
Sbjct: 242 SGAAQETVRLFDDMLSSG-NEPDETTWVTVLSSCSSLGDPCLAESIVRKLDRMNFRSNYF 300
Query: 121 HVSNCLIDTYAKCGCIFSALKLFE----------------------DISVER-------- 150
V L+D +AKCG + A K+FE D+S+ R
Sbjct: 301 -VKTALLDMHAKCGNLEVAQKIFEQLGVYKNSVTWNAMISAYARVGDLSLARDLFNKMPE 359
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
+N VSW S+I+G+A +G +A++ F+ M KP+ VT +SV +AC H G + G
Sbjct: 360 RNTVSWNSMIAGYAQNGESLKAIQLFKEMISSKDSKPDEVTMVSVFSACGHLGRLGLG-N 418
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
+ ++ E + I Y LI M R G +E A + ++ ++V + TL+ +
Sbjct: 419 WAVSILHENHIKLSISGYNSLIFMYLRCGSMEDARITFQEMATK--DLVSYNTLISGLAA 476
Query: 270 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFP 326
HG+ ++ K+ E G G D + +L G E +V + ++K P
Sbjct: 477 HGHGTESIKLMSKM--KEDGIGPDRITYIGVLTACSHAGLLEEGWKVFE---SIKVP 528
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 111/268 (41%), Gaps = 49/268 (18%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ K+G +E AR LF+EMP R W II GY + A LF C
Sbjct: 138 NAIMGIYAKYGCIELARKLFDEMPDRTAADWNVIISGYWKCGNEKEATRLF-----CMMG 192
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
E SE ++ + + +RN +
Sbjct: 193 E-SEKNVITWTTMVTGHAKMRNLE----------------------------------TA 217
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
+++ D ER+ + SW +++SG+A G +E V F+ M +P+ T+++VL++CS
Sbjct: 218 RMYFDEMPERR-VASWNAMLSGYAQSGAAQETVRLFDDMLSSGNEPDETTWVTVLSSCSS 276
Query: 201 GG---LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNV 257
G L E ++ D+M L+DM + G LE A+K+ + N
Sbjct: 277 LGDPCLAESIVRKLDRMNFRSNYFVKT----ALLDMHAKCGNLEVAQKIFEQL-GVYKNS 331
Query: 258 VVWRTLLGACSFHGNVEMGERVTRKILE 285
V W ++ A + G++ + + K+ E
Sbjct: 332 VTWNAMISAYARVGDLSLARDLFNKMPE 359
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 135/297 (45%), Gaps = 28/297 (9%)
Query: 35 YARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGAL-ALFRRMVACEYTEPSEITILAVFPA 93
Y +F NV +T ++ Y+++ + + +LF+ M +P + +P
Sbjct: 54 YTSHIFRAATYPNVHVFTCMLKYYSQIGATTQVVVSLFKHMQYYNDIKP----YTSFYPV 109
Query: 94 IWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 153
+ ++ + L+H Y K G + H HV N ++ YAK GCI A KLF+++ +
Sbjct: 110 LIKSAG-KAGMLLHAYLLKLGHSHDH-HVRNAIMGIYAKYGCIELARKLFDEMP--DRTA 165
Query: 154 VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDK 213
W IISG+ G KEA F M + + N +T+ +++ + +E +FD+
Sbjct: 166 ADWNVIISGYWKCGNEKEATRLFCMMGES--EKNVITWTTMVTGHAKMRNLETARMYFDE 223
Query: 214 MVEECEVLPDIKHYGCLIDMLGRAGRLEQA-----EKVASGI-PSEITNVVVWRTLLGAC 267
M E + + ++ ++G ++ + ++SG P E T W T+L +C
Sbjct: 224 MPER-----RVASWNAMLSGYAQSGAAQETVRLFDDMLSSGNEPDETT----WVTVLSSC 274
Query: 268 SFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALK 324
S G+ + E + RK+ M + +Y + +L + G+ E +++ ++ K
Sbjct: 275 SSLGDPCLAESIVRKLDRM--NFRSNYFVKTALLDMHAKCGNLEVAQKIFEQLGVYK 329
>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
[Vitis vinifera]
gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/318 (36%), Positives = 186/318 (58%), Gaps = 3/318 (0%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E ++ +I K + + +F + + W II G S A+ LF++
Sbjct: 357 ESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQ 416
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M+ E +P++ T+ ++ PA D++ + +HGY + GF + I V+ LID Y+KC
Sbjct: 417 MLM-EAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLS-RIEVATILIDIYSKC 474
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + SA +F I + K++++W++II+G+ MHG G+ A+ F++M + +KPN +TF S
Sbjct: 475 GSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTS 534
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L+ACSH GLV+EGL F M+E+ ++ HY C+ID+LGRAGRLE+A ++ +
Sbjct: 535 ILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFR 594
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
N VW LLG+C H NVE+GE + + E+E G G+YVL+ NI + V R+ DAE +
Sbjct: 595 -PNHAVWGALLGSCVIHENVELGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAEHV 653
Query: 314 RRVVDERNALKFPGRSLV 331
R +++ K P SL+
Sbjct: 654 RLMMNNIGLRKTPAHSLI 671
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 133/259 (51%), Gaps = 5/259 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
++ WN ++ K G ++ A+ +F EM R+VVSWT +++GY + AL L +M+
Sbjct: 258 DISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSAL-LLCQMM 316
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
E +P+ +T+ +V A +++ + +HG+ ++ + + V LID YAKC
Sbjct: 317 QFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLES-EVIVETALIDMYAKCNN 375
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ + ++F S +R W +IISG +G+ ++A+E F++M + PN T S+L
Sbjct: 376 VNLSFRVFSKTSKQRT--APWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLL 433
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
A + +++ ++ L I+ LID+ + G LE A + +GIP +
Sbjct: 434 PAYAFLTDLQQARNMHGYLIRS-GFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDK 492
Query: 256 NVVVWRTLLGACSFHGNVE 274
+++ W ++ HG+ E
Sbjct: 493 DIITWSAIIAGYGMHGHGE 511
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 136/277 (49%), Gaps = 36/277 (12%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ + GE+E AR +F+ M R +VSW +I+GY + AL +F M+ +
Sbjct: 162 NSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIG-KGI 220
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
EP T+++V P ++ + +H E + I V N L+D YAKCG + A
Sbjct: 221 EPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGE-DISVWNSLLDMYAKCGNMDEAQ 279
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS- 199
+F ++ +++++VSWT++++G+ ++G + A+ + MQ +KPN VT SVL+AC+
Sbjct: 280 MIFYEM--DKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACAS 337
Query: 200 ----------HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
HG + + L E EV+ + LIDM + + + +V S
Sbjct: 338 LYSLKHGRCLHGWAIRQKL--------ESEVIVET----ALIDMYAKCNNVNLSFRVFSK 385
Query: 250 IPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM 286
+ T W ++ C +G ++RK +E+
Sbjct: 386 TSKQRT--APWNAIISGCIHNG-------LSRKAIEL 413
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 6/244 (2%)
Query: 30 WGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILA 89
+G +AR LF+E+ ++ SW +I YT S AL LF +M+A P T
Sbjct: 69 FGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPF 128
Query: 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE 149
V A LIH GF++ V N L+ Y CG + A ++F D+ E
Sbjct: 129 VIKACGDYLLPEMGALIHARTVMSGFDS-DAFVQNSLMAMYMNCGEMEVARRVF-DLMRE 186
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
R LVSW ++I+G+ +G KEA+ F+ M ++P+ T +SVL CS+ +E G +
Sbjct: 187 R-TLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRR 245
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
+VE + DI + L+DM + G +++A+ + + +VV W T++
Sbjct: 246 -VHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKR--DVVSWTTMMNGYIL 302
Query: 270 HGNV 273
+G+
Sbjct: 303 NGDA 306
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 99 DVRNCQLIHGYGEKRGF--NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 156
+ N + IH + G + + H+ + L YA GC A KLF+++ +L SW
Sbjct: 33 SIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAPHARKLFDEL--RNPSLFSW 90
Query: 157 TSIISGFAMHGMGKEAVENFERMQKVVLK-PNRVTFLSVLNACSHGGLVEEG 207
++I + G+ +A+ F +M + P+ T+ V+ AC L E G
Sbjct: 91 NAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMG 142
>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
Length = 761
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 119/326 (36%), Positives = 187/326 (57%), Gaps = 10/326 (3%)
Query: 7 KLFDEL-PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 65
++FDEL RN VTWN MI+ + G L+ AR LF MP RNVV+W +I GY + +S
Sbjct: 316 RIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSA 375
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
A+ LF+ M+ + P E+T+++V A G + + + + I N
Sbjct: 376 MAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIK-LSISGHNA 434
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
+I Y++CG + A ++F++++ +++VS+ ++ISGFA HG G EA+ M++ ++
Sbjct: 435 MIFMYSRCGSMEDAKRVFQEMAT--RDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIE 492
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
P+RVTF+ VL ACSH GL+EEG K F+ + + P I HY C++D+LGR G LE A++
Sbjct: 493 PDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKR 547
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
+P E + V+ +LL A H VE+GE K+ E+E G+++L+ NI A
Sbjct: 548 TMERMPME-PHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAG 606
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
R+ D ER+R + + K G S V
Sbjct: 607 RWKDVERIREAMKKGGVKKTTGWSWV 632
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 148/298 (49%), Gaps = 40/298 (13%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFD +PERN++TW M+TG K +LE AR F+ MP R+VVSW ++ GY + +
Sbjct: 185 LFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEV 244
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGD-VRNCQLIHGYGEKR-GFNAFHIHVSNC 125
L LF MV EP E T + V A GD L+ +K+ N F V
Sbjct: 245 LRLFDEMVNAG-IEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCF---VRTA 300
Query: 126 LIDTYAKCGCIFSALKLFEDISVER------------------------------KNLVS 155
L+D YAKCG I +A ++F+++ R +N+V+
Sbjct: 301 LLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVT 360
Query: 156 WTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKM 214
W S+I+G+A +G A+E F+ M L P+ VT +SV++AC H G +E G + +
Sbjct: 361 WNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELG-NWVVRF 419
Query: 215 VEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
+ E ++ I + +I M R G +E A++V + + +VV + TL+ + HG+
Sbjct: 420 LTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATR--DVVSYNTLISGFAAHGH 475
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 111/260 (42%), Gaps = 26/260 (10%)
Query: 34 EYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPA 93
Y LF NV +T ++ Y+ + + +F M C + + + + A
Sbjct: 51 HYTHLLFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSA 110
Query: 94 IWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 153
NG + + G G +AF V N +ID YA+ G I A K+F++I + +
Sbjct: 111 --GNGGIGFHAHVLKLGH--GSDAF---VRNAVIDMYARLGPIGHARKVFDEIPDYERKV 163
Query: 154 VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDK 213
W +++SG+ +A F+ V+ + N +T+ +++ + +E ++FD
Sbjct: 164 ADWNAMVSGYWKWESEGQAQWLFD----VMPERNVITWTAMVTGYAKVKDLEAARRYFDC 219
Query: 214 MVEECEVLPDIKHYGCLIDMLGRAGRLEQA-----EKVASGI-PSEITNVVVWRTLLGAC 267
M E V + ++ + G E+ E V +GI P E T W T++ AC
Sbjct: 220 MPERSVV-----SWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETT----WVTVISAC 270
Query: 268 SFHGNVEMGERVTRKILEME 287
S G+ + + R + + +
Sbjct: 271 SSRGDPCLAASLVRTLHQKQ 290
>gi|356528451|ref|XP_003532816.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 579
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 116/318 (36%), Positives = 185/318 (58%), Gaps = 5/318 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++F +P++N V MITG K G +E AR LF+E+ CR++VSW I+ GY + R
Sbjct: 206 EVFVRMPQKNDVARTAMITGFCKEGRMEDARDLFQEIRCRDLVSWNIIMTGYAQNGRGEE 265
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL LF +M+ +P ++T ++VF A + H K GF++ + V N L
Sbjct: 266 ALNLFSQMIRTG-MQPDDLTFVSVFIACASLASLEEGSKAHALLIKHGFDS-DLSVCNAL 323
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
I ++KCG I + +F IS +LVSW +II+ FA HG+ +A F++M V ++P
Sbjct: 324 ITVHSKCGGIVDSELVFGQIS--HPDLVSWNTIIAAFAQHGLYDKARSYFDQMVTVSVQP 381
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +TFLS+L+AC G V E + F MV+ + P +HY CL+D++ RAG+L++A K+
Sbjct: 382 DGITFLSLLSACCRAGKVNESMNLFSLMVDNYGIPPRSEHYACLVDVMSRAGQLQRACKI 441
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ +P + + +W +L ACS H NVE+GE R+IL ++ G YV++ NI A +
Sbjct: 442 INEMPFK-ADSSIWGAVLAACSVHLNVELGELAARRILNLDPFNSGAYVMLSNIYAAAGK 500
Query: 307 YGDAERLRRVVDERNALK 324
+ D R+R ++ E+ K
Sbjct: 501 WKDVHRIRVLMKEQGVKK 518
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 139/271 (51%), Gaps = 16/271 (5%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+D + PE+N ++N +I+GL + G ++ A+ LFE MPC NVVS+T ++DGY R+
Sbjct: 107 LQDAFRYLAAAPEKNAASYNAIISGLARCGRMKDAQRLFEAMPCPNVVSYTAMVDGYARV 166
Query: 62 NRSNG-ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
G A ALF M + ++ + + + +NG + ++ A
Sbjct: 167 EGGIGRARALFEAM-----PRRNSVSWVVMINGLVENGLCEEAWEVFVRMPQKNDVA--- 218
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+I + K G + A LF++I ++LVSW I++G+A +G G+EA+ F +M
Sbjct: 219 --RTAMITGFCKEGRMEDARDLFQEIRC--RDLVSWNIIMTGYAQNGRGEEALNLFSQMI 274
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ ++P+ +TF+SV AC+ +EEG K +++ D+ LI + + G +
Sbjct: 275 RTGMQPDDLTFVSVFIACASLASLEEGSKAHALLIKH-GFDSDLSVCNALITVHSKCGGI 333
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+E V I ++V W T++ A + HG
Sbjct: 334 VDSELVFGQISHP--DLVSWNTIIAAFAQHG 362
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 129/264 (48%), Gaps = 30/264 (11%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
R++ N+ I L + G+++ AR LF+EM ++VV+W ++ Y + NG L +R
Sbjct: 27 RDVYHANLDIVALSRAGKVDAARKLFDEMATKDVVTWNSMLSAYWQ----NG---LLQRS 79
Query: 75 VACEYTEP--SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK 132
A ++ P + ++ ++ A QN ++++ ++ ++ N +I A+
Sbjct: 80 KALFHSMPLRNVVSWNSIIAACVQNDNLQDAFRYLAAAPEKNAASY-----NAIISGLAR 134
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAM--HGMGKEAVENFERMQKVVLKPNRVT 190
CG + A +LFE + N+VS+T+++ G+A G+G+ A FE M + N V+
Sbjct: 135 CGRMKDAQRLFEAMPC--PNVVSYTAMVDGYARVEGGIGR-ARALFEAMP----RRNSVS 187
Query: 191 FLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI 250
++ ++N GL EE + F +M ++ +V +I + GR+E A + I
Sbjct: 188 WVVMINGLVENGLCEEAWEVFVRMPQKNDVA-----RTAMITGFCKEGRMEDARDLFQEI 242
Query: 251 PSEITNVVVWRTLLGACSFHGNVE 274
++V W ++ + +G E
Sbjct: 243 --RCRDLVSWNIIMTGYAQNGRGE 264
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV----VSWTGIIDGYT 59
D +F ++ +LV+WN +I + G + ARS F++M +V +++ ++
Sbjct: 335 DSELVFGQISHPDLVSWNTIIAAFAQHGLYDKARSYFDQMVTVSVQPDGITFLSLLSACC 394
Query: 60 RMNRSNGALALFRRMV 75
R + N ++ LF MV
Sbjct: 395 RAGKVNESMNLFSLMV 410
>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
Length = 846
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 125/309 (40%), Positives = 179/309 (57%), Gaps = 5/309 (1%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N + K G LE R +F+ M R++VSWT ++ Y++ + ALA F M E
Sbjct: 411 NAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMRE-EGF 469
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P++ T +V + + + +HG K G + + + LID YAKCG I A
Sbjct: 470 APNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKC-IESALIDMYAKCGSITEAG 528
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
K+F+ IS ++VSWT+IISG+A HG+ ++A++ F RM+ +K N VT L VL ACSH
Sbjct: 529 KVFDKIS--NPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSH 586
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
GG+VEEGL +F +M + V+P+++HY C+ID+LGR GRL+ A + +P E N +VW
Sbjct: 587 GGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPME-PNEMVW 645
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320
+TLLG C HGNVE+GE RKIL + Y YVL+ N Y D LR V+ ++
Sbjct: 646 QTLLGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQ 705
Query: 321 NALKFPGRS 329
K PG S
Sbjct: 706 GVKKEPGYS 714
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 168/359 (46%), Gaps = 64/359 (17%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEE--MPCRNVVSWTGIIDGYTRMNRSNGALALF 71
E N++ +I K G L ARS+F+ + C W +I GY++ S AL L+
Sbjct: 300 EGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELY 359
Query: 72 RRMVACEYTEPSEI-TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTY 130
+M C+ S++ T +VF AI + ++ +++HG K G + + V+N + D Y
Sbjct: 360 VQM--CQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAY 417
Query: 131 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVT 190
+KCG + K+F+ + E +++VSWT++++ ++ +G+EA+ F M++ PN+ T
Sbjct: 418 SKCGFLEDVRKVFDRM--EERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFT 475
Query: 191 FLSVLNACS-----------HGGLVEEGL------------------------KFFDKMV 215
F SVL +C+ HG L + GL K FDK+
Sbjct: 476 FSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKIS 535
Query: 216 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKV-----ASGIPSEITNVVVWRTLLGACSFH 270
PDI + +I + G +E A ++ SGI + N V +L ACS
Sbjct: 536 N-----PDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKA---NAVTLLCVLFACSHG 587
Query: 271 GNVEMGERVTRKILEMERGYG-----GDYVLMYNILAGVWRYGDA-ERLRRVVDERNAL 323
G VE G + +ME GYG Y + ++L V R DA E +R++ E N +
Sbjct: 588 GMVEEGLFYFQ---QMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEM 643
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 98/219 (44%), Gaps = 7/219 (3%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
K E A +F+EMP RNV SWT +I G T F M+ P +
Sbjct: 113 KCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGIL-PDKFAYS 171
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
A+ + + +++H RGF A HI VS L++ YAK G I + +F ++
Sbjct: 172 AIIQSCIGLDSLELGKMVHAQIVMRGF-ATHIFVSTSLLNMYAKLGSIEDSYWVFNMMT- 229
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
N VSW ++ISG +G+ EA + F RM+ PN T +SV A G LV+ +
Sbjct: 230 -EHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAV--GKLVDVNM 286
Query: 209 -KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
K E + ++ LIDM + G L A V
Sbjct: 287 GKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSV 325
>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
Length = 676
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/318 (36%), Positives = 186/318 (58%), Gaps = 3/318 (0%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E ++ +I K + + +F + + W II G S A+ LF++
Sbjct: 357 ESEVIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQ 416
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M+ E +P++ T+ ++ PA D++ + +HGY + GF + I V+ LID Y+KC
Sbjct: 417 MLM-EAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLS-RIEVATILIDIYSKC 474
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + SA +F I + K++++W++II+G+ MHG G+ A+ F++M + +KPN +TF S
Sbjct: 475 GSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTS 534
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L+ACSH GLV+EGL F M+E+ ++ HY C+ID+LGRAGRLE+A ++ +
Sbjct: 535 ILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFR 594
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
N VW LLG+C H NVE+GE + + E+E G G+YVL+ NI + V R+ DAE +
Sbjct: 595 -PNHAVWGALLGSCVIHENVELGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAEHV 653
Query: 314 RRVVDERNALKFPGRSLV 331
R +++ K P SL+
Sbjct: 654 RLMMNNIGLRKTPAHSLI 671
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 133/259 (51%), Gaps = 5/259 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
++ WN ++ K G ++ A+ +F EM R+VVSWT +++GY + AL L +M+
Sbjct: 258 DISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSAL-LLCQMM 316
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
E +P+ +T+ +V A +++ + +HG+ ++ + + V LID YAKC
Sbjct: 317 QFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLES-EVIVETALIDMYAKCNN 375
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ + ++F S +R W +IISG +G+ ++A+E F++M + PN T S+L
Sbjct: 376 VNLSFRVFSKXSKQRT--APWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLL 433
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
A + +++ ++ L I+ LID+ + G LE A + +GIP +
Sbjct: 434 PAYAFLTDLQQARNMHGYLIRS-GFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDK 492
Query: 256 NVVVWRTLLGACSFHGNVE 274
+++ W ++ HG+ E
Sbjct: 493 DIITWSAIIAGYGMHGHGE 511
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 137/272 (50%), Gaps = 26/272 (9%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ + GE+E AR +F+ M R +VSW +I+GY + AL +F M+ +
Sbjct: 162 NSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIG-KGI 220
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
EP T+++V P ++ + +H E + I V N L+D YAKCG + A
Sbjct: 221 EPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGE-DISVWNSLLDMYAKCGNMDEAQ 279
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS- 199
+F ++ +++++VSWT++++G+ ++G + A+ + MQ +KPN VT SVL+AC+
Sbjct: 280 MIFYEM--DKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACAS 337
Query: 200 -----HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
HG + G K+ E EV+ + LIDM + + + +V S +
Sbjct: 338 LYSLKHGRCL-HGWAIRQKL--ESEVIVET----ALIDMYAKCNNVNLSFRVFSKXSKQR 390
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEM 286
T W ++ C +G ++RK +E+
Sbjct: 391 T--APWNAIISGCIHNG-------LSRKAIEL 413
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 118/243 (48%), Gaps = 6/243 (2%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G +AR LF+E+ ++ SW +I YT S AL LF +M+A P T V
Sbjct: 70 GCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFV 129
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A LIH GF++ V N L+ Y CG + A ++F D+ ER
Sbjct: 130 IKACGDYLLPEMGALIHARTVMSGFDS-DAFVQNSLMAMYMNCGEMEVARRVF-DLMRER 187
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
LVSW ++I+G+ +G KEA+ F+ M ++P+ T +SVL CS+ +E G +
Sbjct: 188 -TLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRR- 245
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
+VE + DI + L+DM + G +++A+ + + +VV W T++ +
Sbjct: 246 VHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKR--DVVSWTTMMNGYILN 303
Query: 271 GNV 273
G+
Sbjct: 304 GDA 306
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 99 DVRNCQLIHGYGEKRGF--NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 156
+ N + IH + G + + H+ + L YA CGC A KLF+++ +L SW
Sbjct: 33 SIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCAPHARKLFDEL--RNPSLFSW 90
Query: 157 TSIISGFAMHGMGKEAVENFERMQKVVLK-PNRVTFLSVLNACSHGGLVEEG 207
++I + G+ +A+ F +M + P+ T+ V+ AC L E G
Sbjct: 91 NAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMG 142
>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
Length = 687
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 121/354 (34%), Positives = 192/354 (54%), Gaps = 33/354 (9%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FDE+PE++ V+WN M+ G K GE E A LF+ MP RNVVSW+ ++ Y + A
Sbjct: 289 MFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMA 348
Query: 68 LALFRRM------------VACE-----------YTEPSE-------ITILAVFPAIWQN 97
+F +M AC +TE + I ++++ A ++
Sbjct: 349 RVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAES 408
Query: 98 GDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 157
G + + IH + +R + + V N L+D + KCGC+ A +F D + K+LVSW
Sbjct: 409 GSLALGKRIHRHVRQRKLSRSTL-VCNALMDMFCKCGCVNRADYIF-DTEIVEKDLVSWN 466
Query: 158 SIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE 217
II GFAMHG G++A+E F +M++ P+ VT ++VL+AC+H GLVEEG +FF M +
Sbjct: 467 IIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETD 526
Query: 218 CEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGE 277
+ P I+HYGC++D+LGR G +++A + +P E N V+W +LL AC H NVE E
Sbjct: 527 YGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWE-PNEVIWGSLLSACRLHKNVEYAE 585
Query: 278 RVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
++ ++ G+Y ++ NI A ++ D + R + + K G S +
Sbjct: 586 LAVNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWI 639
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 147/317 (46%), Gaps = 53/317 (16%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D K+FDE+ R++V+WN + +V+ GE++ ARS+F+EMP ++ VSW ++DGY +
Sbjct: 252 LSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDTVSWNTMLDGYAKA 311
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ A LF+RM P + W
Sbjct: 312 GEAEKAFELFQRM-------PGRNVV------SW-------------------------- 332
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ ++ Y K G + A +F+ + KNLV+WT ++S A G+ +EA F M
Sbjct: 333 --STVVSAYCKKGDMEMARVIFDKMPA--KNLVTWTIMVSACAQKGLVEEAGRLFTEMMD 388
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++ + + +S+L AC+ G + G K + V + ++ L+DM + G +
Sbjct: 389 AAIELDVIAVVSILAACAESGSLALG-KRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVN 447
Query: 242 QAEKVASGIPSEIT--NVVVWRTLLGACSFHGNVEMGERVTRKILEM-ERGYGGDYVLMY 298
+A+ + +EI ++V W ++G + HG GE+ +M ++G+ D V +
Sbjct: 448 RADYI---FDTEIVEKDLVSWNIIIGGFAMHGP---GEKALELFAQMKQQGFHPDAVTLI 501
Query: 299 NILAGVWRYGDAERLRR 315
N+L+ G E RR
Sbjct: 502 NVLSACTHMGLVEEGRR 518
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 96/203 (47%), Gaps = 18/203 (8%)
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LID Y+K + A K+F++++ +++VSW + ++ G A F+ M
Sbjct: 238 VGNALIDAYSKNQGLSDAKKVFDEMTT--RDVVSWNTAMAAMVRQGEVDAARSMFDEMP- 294
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ + V++ ++L+ + G E+ + F +M ++ + ++ + G +E
Sbjct: 295 ---EKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGR-----NVVSWSTVVSAYCKKGDME 346
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A + +P++ N+V W ++ AC+ G VE R+ ++ M+ D + + +IL
Sbjct: 347 MARVIFDKMPAK--NLVTWTIMVSACAQKGLVEEAGRLFTEM--MDAAIELDVIAVVSIL 402
Query: 302 AGVWRYGD---AERLRRVVDERN 321
A G +R+ R V +R
Sbjct: 403 AACAESGSLALGKRIHRHVRQRK 425
>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
Length = 1198
Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats.
Identities = 111/326 (34%), Positives = 186/326 (57%), Gaps = 5/326 (1%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ LF+++P++N+V MITG K G+ + A+ LF+++PCR++ SW +I GY +
Sbjct: 148 EAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGS 207
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
AL L +M+ +P T+++V A ++ + H K G+ + I +
Sbjct: 208 GEEALKLHSQMLKMG-MQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYES-RISIC 265
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N LI Y KCG I + F I + ++VSW ++I+ FA HG A+ +F M+
Sbjct: 266 NALITMYCKCGSILDSELAFRQI--DHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNR 323
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
++P+ +TFLS+L+AC H G V E L +F+ M+E +++P +H+ CL+D+L R G++E+A
Sbjct: 324 VEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKA 383
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
K+ +P E + +W LL AC H NV++GE +KI+E+E G YV++ NI A
Sbjct: 384 YKIIQEMPFE-ADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAA 442
Query: 304 VWRYGDAERLRRVVDERNALKFPGRS 329
+G+ R+R ++ E+ K P S
Sbjct: 443 AGMWGEVTRVRGLMREQGVKKQPAYS 468
Score = 118 bits (296), Expect = 3e-24, Method: Composition-based stats.
Identities = 87/275 (31%), Positives = 133/275 (48%), Gaps = 35/275 (12%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+ F +P+RN +WN MI+GLV++ +E A LFEEMP RNV+S+T ++DGY ++
Sbjct: 58 QYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQ 117
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF----NAF---- 118
A ALF M Q V +I GY E F N F
Sbjct: 118 ARALFNCMP--------------------QKNVVSWTVMISGYVENGKFDEAENLFEQMP 157
Query: 119 --HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
+I +I Y K G A LF+ I ++L SW ++I+G+A +G G+EA++
Sbjct: 158 DKNIVAMTAMITGYCKEGKTDKAKILFDQIPC--RDLASWNAMITGYAQNGSGEEALKLH 215
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
+M K+ ++P+ T +SVL ACS ++EG K +V + I LI M +
Sbjct: 216 SQMLKMGMQPDHSTLISVLTACSSLASLQEGRK-THVLVLKSGYESRISICNALITMYCK 274
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
G + +E I + +VV W ++ A + HG
Sbjct: 275 CGSILDSELAFRQI--DHPDVVSWNAMIAAFARHG 307
>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/331 (35%), Positives = 194/331 (58%), Gaps = 5/331 (1%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
F+ +FD +R++VTW +I+G + G++ AR LF+ MP +N VSW +I GY R
Sbjct: 162 FMDLARNMFDMSIKRDVVTWTCLISGYLNSGQVLIARELFDRMPEKNPVSWGALIAGYVR 221
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+ AL +F M + + +I+ A G + + IH Y KR +
Sbjct: 222 IGFFKEALEVFYDMQVSGF-RLNRASIVGALTACAFLGALDQGRWIHAY-VKRHHMSLDR 279
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+ LID YAKCGCI A +F+++ + +++ ++T +ISG A H + A++ F RMQ
Sbjct: 280 MLGTALIDMYAKCGCIEMACSVFDEM--DDRDVYAFTCLISGLANHDKSEAAIDLFNRMQ 337
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ PN VTF+ VLNACS G+V+EGL+ F+ M + P I+HYGCL+D+LGRAG++
Sbjct: 338 DEGVVPNEVTFVCVLNACSRMGMVDEGLRIFESMSNRYVIEPQIQHYGCLVDLLGRAGKI 397
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+A++V +P + + + LL AC HG+V++GE + +++ +GG +VL+ N+
Sbjct: 398 EEAKQVVREMPLQPDSYTLG-ALLDACRVHGDVQLGEEMVDSLVQRCLDHGGVHVLLSNM 456
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ DA ++R+ ++++N K PG S +
Sbjct: 457 YASADKWEDASKIRKKMEDKNIRKLPGCSSI 487
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 90/359 (25%), Positives = 144/359 (40%), Gaps = 82/359 (22%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
L YA LF + ++ W ++ + N + A +L++ M+ Y P+ T V
Sbjct: 60 SSLFYAERLFLCLQNKSTFIWNTMMQAFVEKNEAVRAFSLYKHMLESNYL-PNNFTFSFV 118
Query: 91 FPAIWQNGDVRNCQL---IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS 147
A DV N Q+ HG K G+ ++ V N LI YA CG + A +F D+S
Sbjct: 119 IRACI---DVFNLQMGLCFHGQVVKFGWESYDF-VQNGLIHLYANCGFMDLARNMF-DMS 173
Query: 148 VER------------------------------KNLVSWTSIISGFAMHGMGKEAVENFE 177
++R KN VSW ++I+G+ G KEA+E F
Sbjct: 174 IKRDVVTWTCLISGYLNSGQVLIARELFDRMPEKNPVSWGALIAGYVRIGFFKEALEVFY 233
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGL----------KFFDKMV------------ 215
MQ + NR + + L AC+ G +++G D+M+
Sbjct: 234 DMQVSGFRLNRASIVGALTACAFLGALDQGRWIHAYVKRHHMSLDRMLGTALIDMYAKCG 293
Query: 216 ---EECEVLP-----DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE--ITNVVVWRTLLG 265
C V D+ + CLI L + E A + + + E + N V + +L
Sbjct: 294 CIEMACSVFDEMDDRDVYAFTCLISGLANHDKSEAAIDLFNRMQDEGVVPNEVTFVCVLN 353
Query: 266 ACSFHGNVEMGERV-----TRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319
ACS G V+ G R+ R ++E + + G V + + R G E ++VV E
Sbjct: 354 ACSRMGMVDEGLRIFESMSNRYVIEPQIQHYGCLVDL------LGRAGKIEEAKQVVRE 406
>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 129/373 (34%), Positives = 193/373 (51%), Gaps = 48/373 (12%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLV--------------------------------- 28
++ KLFDEL +R++++WN MI+G V
Sbjct: 201 VESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELT 260
Query: 29 ----------KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACE 78
K G L A +FE M R+VVSWT +I GY R S+ ++ LF M E
Sbjct: 261 LNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEK-E 319
Query: 79 YTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFS 138
P+ IT+ + PA + Q IHG+ + GF + HV+N L+D Y KCG +
Sbjct: 320 DLFPNSITMACILPACASLAALERGQEIHGHILRNGF-SLDRHVANALVDMYLKCGALGL 378
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198
A LF+ I K+LVSWT +I+G+ MHG G EA+ F M+ ++P+ V+F+S+L AC
Sbjct: 379 ARLLFDMIP--EKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYAC 436
Query: 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
SH GL++EG FF+ M C + P +HY C++D+L RAG L +A K +P E +
Sbjct: 437 SHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIE-PDAT 495
Query: 259 VWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVD 318
+W LL C + +V++ E+V + E+E G YVL+ NI A ++ + ++LR +
Sbjct: 496 IWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIG 555
Query: 319 ERNALKFPGRSLV 331
R K PG S +
Sbjct: 556 RRGLRKNPGCSWI 568
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 134/288 (46%), Gaps = 52/288 (18%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGE------------------LEYARSLFEEM 43
L++G ++FD++ + WN+++ G K G +E AR LF+E+
Sbjct: 152 LREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDEL 211
Query: 44 PCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNC 103
R+V+SW +I GY S L LF +M+ +L + N D+
Sbjct: 212 GDRDVISWNSMISGYVSNGLSEKGLDLFEQML-----------LLGI------NTDLAT- 253
Query: 104 QLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 163
+ + ++NCL+D Y+K G + SA+++FE ++ +++VSWTS+I+G+
Sbjct: 254 -----------MVSVELTLNNCLLDMYSKSGNLNSAIQVFE--TMGERSVVSWTSMIAGY 300
Query: 164 AMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD 223
A G+ +V F M+K L PN +T +L AC+ +E G + ++ L D
Sbjct: 301 AREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSL-D 359
Query: 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
L+DM + G L A + IP + ++V W ++ HG
Sbjct: 360 RHVANALVDMYLKCGALGLARLLFDMIPEK--DLVSWTVMIAGYGMHG 405
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 91/205 (44%), Gaps = 35/205 (17%)
Query: 124 NCLIDTYAKCGCIFSALKLFE---DISVER-------------KNLVSWTSIISGFAMHG 167
N L++ YAK G +L LF+ ++ + R ++++SW S+ISG+ +G
Sbjct: 171 NLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNG 230
Query: 168 MGKEAVENFERMQKVVLKPNRVTFLSV---LNAC-----SHGGLVEEGLKFFDKMVEECE 219
+ ++ ++ FE+M + + + T +SV LN C S G + ++ F+ M E
Sbjct: 231 LSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSV 290
Query: 220 VLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE--ITNVVVWRTLLGACSFHGNVEMGE 277
V + +I R G + + ++ + E N + +L AC+ +E G+
Sbjct: 291 V-----SWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQ 345
Query: 278 RVTRKIL----EMERGYGGDYVLMY 298
+ IL ++R V MY
Sbjct: 346 EIHGHILRNGFSLDRHVANALVDMY 370
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 88/184 (47%), Gaps = 28/184 (15%)
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
L+ Y CG + ++F+ ++ E+ L W +++G+A G +E++ F+RM+++ ++
Sbjct: 142 LVFMYVTCGDLREGRRIFDKVANEKVFL--WNLLMNGYAKIGNFRESLSLFKRMRELGIR 199
Query: 186 --------------PNRVTFLSVLNACSHGGLVEEGLKFFDKMV-------EECEVLPDI 224
+ +++ S+++ GL E+GL F++M+ V ++
Sbjct: 200 RVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVEL 259
Query: 225 KHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKIL 284
CL+DM ++G L A +V + +VV W +++ + G +M R+
Sbjct: 260 TLNNCLLDMYSKSGNLNSAIQVFETMGER--SVVSWTSMIAGYAREGLSDMSVRLFH--- 314
Query: 285 EMER 288
EME+
Sbjct: 315 EMEK 318
>gi|220061997|gb|ACL79586.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
Length = 587
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 179/314 (57%), Gaps = 12/314 (3%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVAC--- 77
++ K G+L AR +F+EM R+V +W ++ G + N ALALF R+
Sbjct: 150 TTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQE 209
Query: 78 --EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
EP+E+TI+A A Q G +++ +H + ++ G + ++ V N LID Y+KCG
Sbjct: 210 LPSREEPNEVTIVAALSACAQIGLLKDGMYVHEFAKRFGLDR-NVRVCNSLIDMYSKCGS 268
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ AL +F I E + LVS+ + I +MHG G +A+ F+ M + +P+ VT+L+VL
Sbjct: 269 LSRALDVFHSIKPEDQTLVSYNAAIQAHSMHGHGGDALRLFDEMPTRI-EPDGVTYLAVL 327
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
C+H GLV++GL+ F+ M V P++KHYG ++D+LGRAGRL +A +P
Sbjct: 328 CGCNHSGLVDDGLRVFNSM----RVAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFP-A 382
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
++V+W+TLLGA HG VE+ E K+ E+ GDYVL+ N+ A R+ D R+R
Sbjct: 383 DIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRD 442
Query: 316 VVDERNALKFPGRS 329
+ + K PG S
Sbjct: 443 TMRSNDVRKVPGFS 456
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 13/233 (5%)
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
P +++ A + D +H + G A + + L+D+YAKCG + SA K
Sbjct: 109 PDALSLSFALKASARCSDAHTTVQLHALVLRLGVAA-DVRLLTTLLDSYAKCGDLASARK 167
Query: 142 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL------KPNRVTFLSVL 195
+F++++V +++ +W S+++G A A+ F R+ +PN VT ++ L
Sbjct: 168 VFDEMTV--RDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAAL 225
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+AC+ GL+++G+ + + + + +++ LIDM + G L +A V I E
Sbjct: 226 SACAQIGLLKDGM-YVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQ 284
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
+V + + A S HG+ G R EM D V +L G G
Sbjct: 285 TLVSYNAAIQAHSMHGH---GGDALRLFDEMPTRIEPDGVTYLAVLCGCNHSG 334
>gi|449486568|ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Cucumis sativus]
Length = 532
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 120/333 (36%), Positives = 188/333 (56%), Gaps = 8/333 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++ ++FDE+PE + V+W VMI G G+++ AR LF+ ++ W +I GY +
Sbjct: 156 MRSARQVFDEMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQN 215
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
N L +FR M E EP E I+ + A G + IH Y + G +
Sbjct: 216 NCFKEGLHMFRLMQLTE-VEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGL-PLTLR 273
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VS LID YAKCG + A LF ++S +R N V W ++ISG AM G G+ A++ F M+K
Sbjct: 274 VSTGLIDMYAKCGHLDLAKYLFNEMS-QRDN-VCWNAMISGMAMDGDGEGAIKLFMEMEK 331
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KP+ +TF++V ACS+ G+V+EG++ +++M ++ P +HYGC+ID+L R GR E
Sbjct: 332 AGIKPDNITFIAVWXACSNSGMVDEGIRIWNRMSTVHKIEPKSEHYGCVIDLLSRVGRFE 391
Query: 242 QAEKVASGIP---SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMY 298
+AE V +P S V WR L AC HG + E ++ ++ER + G YVL+
Sbjct: 392 EAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQAEVAAERLFQLER-HSGAYVLLS 450
Query: 299 NILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
N+ A + ++ DA+R+R ++ + K PG S +
Sbjct: 451 NMYAALGKHEDAKRVRNMMKLKGVEKVPGCSSI 483
>gi|347954498|gb|AEP33749.1| chloroplast biogenesis 19, partial [Crucihimalaya wallichii]
Length = 491
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 121/331 (36%), Positives = 189/331 (57%), Gaps = 6/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+K +FD + + N VTWN MI G ++ G+++ A +F++MP R+++SWT +I+G+ +
Sbjct: 116 VKKARLVFDYMEDINSVTWNTMIDGYMRSGQVDNAVKMFDKMPERDLISWTAMINGFVKK 175
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL FR M P + I+A A G + +H Y + F ++
Sbjct: 176 GFHEEALVWFREM-QISGVRPDYVAIIAALNACTNLGALSFGLWVHRYVMNQDFKN-NVR 233
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VSN LID Y +CGC+ A ++F+ + E++ +VSW S+I GFA +G E++ F +MQ+
Sbjct: 234 VSNSLIDLYCRCGCVEFAREVFDKM--EKRTVVSWNSVIVGFAANGNAHESLVYFRKMQE 291
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KP+ VTF L ACSH GLVEEGL++F M + + P I+HYGCL+D+ RAGRLE
Sbjct: 292 EGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYGISPRIEHYGCLVDLYSRAGRLE 351
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHG-NVEMGERVTRKILEMERGYGGDYVLMYNI 300
A KV +P + N VV +LL AC HG N + ER+ + + ++ +YV++ N+
Sbjct: 352 DALKVIESMPMK-PNEVVIGSLLAACRTHGNNTVLAERLMKHLSDLNVKSHSNYVILSNM 410
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ A ++RR + K PG S +
Sbjct: 411 YAADGKWEGASQMRRKMKGLGLKKQPGFSSI 441
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 128/298 (42%), Gaps = 41/298 (13%)
Query: 47 NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAI--WQNGDVRNCQ 104
VSWT I TR R A F M EP+ IT +A+ + +G
Sbjct: 26 TTVSWTSRITLLTRNGRLAEAAKXFSDM-RLSGVEPNHITFIALLSGCGDFPSGSETLSN 84
Query: 105 LIHGYGEKRGFNAFHIHVS-------------------------------NCLIDTYAKC 133
L+HGY K G + H+ V N +ID Y +
Sbjct: 85 LLHGYACKLGLDRTHVMVGTAIIGMYSKRGHVKKARLVFDYMEDINSVTWNTMIDGYMRS 144
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + +A+K+F+ + ++L+SWT++I+GF G +EA+ F MQ ++P+ V ++
Sbjct: 145 GQVDNAVKMFDKMP--ERDLISWTAMINGFVKKGFHEEALVWFREMQISGVRPDYVAIIA 202
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
LNAC++ G + GL + + V + +++ LID+ R G +E A +V + E
Sbjct: 203 ALNACTNLGALSFGL-WVHRYVMNQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKM--E 259
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
VV W +++ + +GN RK+ E G+ D V L G E
Sbjct: 260 KRTVVSWNSVIVGFAANGNAHESLVYFRKM--QEEGFKPDAVTFTGALTACSHVGLVE 315
>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
gi|194696634|gb|ACF82401.1| unknown [Zea mays]
Length = 615
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 121/354 (34%), Positives = 192/354 (54%), Gaps = 33/354 (9%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FDE+PE++ V+WN M+ G K GE E A LF+ MP RNVVSW+ ++ Y + A
Sbjct: 217 MFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMA 276
Query: 68 LALFRRM------------VACE-----------YTEPSE-------ITILAVFPAIWQN 97
+F +M AC +TE + I ++++ A ++
Sbjct: 277 RVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAES 336
Query: 98 GDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 157
G + + IH + +R + + V N L+D + KCGC+ A +F D + K+LVSW
Sbjct: 337 GSLALGKRIHRHVRQRKLSRSTL-VCNALMDMFCKCGCVNRADYIF-DTEIVEKDLVSWN 394
Query: 158 SIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE 217
II GFAMHG G++A+E F +M++ P+ VT ++VL+AC+H GLVEEG +FF M +
Sbjct: 395 IIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETD 454
Query: 218 CEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGE 277
+ P I+HYGC++D+LGR G +++A + +P E N V+W +LL AC H NVE E
Sbjct: 455 YGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWE-PNEVIWGSLLSACRLHKNVEYAE 513
Query: 278 RVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
++ ++ G+Y ++ NI A ++ D + R + + K G S +
Sbjct: 514 LAVNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWI 567
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 147/317 (46%), Gaps = 53/317 (16%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D K+FDE+ R++V+WN + +V+ GE++ ARS+F+EMP ++ VSW ++DGY +
Sbjct: 180 LSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDTVSWNTMLDGYAKA 239
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ A LF+RM P + W
Sbjct: 240 GEAEKAFELFQRM-------PGRNVV------SW-------------------------- 260
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ ++ Y K G + A +F+ + KNLV+WT ++S A G+ +EA F M
Sbjct: 261 --STVVSAYCKKGDMEMARVIFDKMPA--KNLVTWTIMVSACAQKGLVEEAGRLFTEMMD 316
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++ + + +S+L AC+ G + G K + V + ++ L+DM + G +
Sbjct: 317 AAIELDVIAVVSILAACAESGSLALG-KRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVN 375
Query: 242 QAEKVASGIPSEIT--NVVVWRTLLGACSFHGNVEMGERVTRKILEM-ERGYGGDYVLMY 298
+A+ + +EI ++V W ++G + HG GE+ +M ++G+ D V +
Sbjct: 376 RADYI---FDTEIVEKDLVSWNIIIGGFAMHGP---GEKALELFAQMKQQGFHPDAVTLI 429
Query: 299 NILAGVWRYGDAERLRR 315
N+L+ G E RR
Sbjct: 430 NVLSACTHMGLVEEGRR 446
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 96/203 (47%), Gaps = 18/203 (8%)
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LID Y+K + A K+F++++ +++VSW + ++ G A F+ M
Sbjct: 166 VGNALIDAYSKNQGLSDAKKVFDEMTT--RDVVSWNTAMAAMVRQGEVDAARSMFDEMP- 222
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ + V++ ++L+ + G E+ + F +M ++ + ++ + G +E
Sbjct: 223 ---EKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGR-----NVVSWSTVVSAYCKKGDME 274
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A + +P++ N+V W ++ AC+ G VE R+ ++ M+ D + + +IL
Sbjct: 275 MARVIFDKMPAK--NLVTWTIMVSACAQKGLVEEAGRLFTEM--MDAAIELDVIAVVSIL 330
Query: 302 AGVWRYGD---AERLRRVVDERN 321
A G +R+ R V +R
Sbjct: 331 AACAESGSLALGKRIHRHVRQRK 353
>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic [Vitis vinifera]
Length = 658
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 113/315 (35%), Positives = 195/315 (61%), Gaps = 8/315 (2%)
Query: 21 NVMITGL---VKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM-VA 76
++M T L ++G + A +F++MP +NVVSW+ +I Y++ + AL LFR+M +
Sbjct: 219 HIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLE 278
Query: 77 CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136
+ P+ +T+++V A + +L+HGY +RG ++ + V + L+ YA+CG +
Sbjct: 279 NQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRRGLDSI-LPVVSALVTVYARCGNL 337
Query: 137 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLN 196
++FE +E++++VSW S+IS + +HG G++A++ F+ M L P+ ++F+SVL
Sbjct: 338 ELGHRVFE--RMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLG 395
Query: 197 ACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256
ACSH GLVEEG F+ MV ++ P ++HY C++D+LGRA RL++A K+ + E
Sbjct: 396 ACSHAGLVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIE-PG 454
Query: 257 VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRV 316
VW +LLG+C H NVE+ ER T ++ E+E G+YVL+ +I A + + +R++ +
Sbjct: 455 PKVWGSLLGSCRIHCNVELAERATSRLFELEPTNAGNYVLLADIYAEAKMWNEVKRVKML 514
Query: 317 VDERNALKFPGRSLV 331
++ R K PGRS +
Sbjct: 515 LEARGLQKVPGRSCI 529
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 143/315 (45%), Gaps = 44/315 (13%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + K+FD+ +R + WN + L G Y R ++D Y RM
Sbjct: 129 IDNARKVFDKTRKRTIYVWNALFRALTLAG---YGRE---------------VLDLYRRM 170
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
NR F + SE F ++ NG + IHG+ + GF H+H
Sbjct: 171 NRIGVPSDRFTYTYVLKACVASE-----AFVSLLLNG-----REIHGHILRHGFEG-HVH 219
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-- 179
+ L+D YA+ GC+ +A ++F+ + V KN+VSW+++I+ ++ +G EA+E F +M
Sbjct: 220 IMTTLLDMYARFGCVLNASRVFDQMPV--KNVVSWSAMIACYSKNGKPLEALELFRKMML 277
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEEC--EVLPDIKHYGCLIDMLGRA 237
+ L PN VT +SVL AC+ +E+G ++ +LP + L+ + R
Sbjct: 278 ENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRRGLDSILPVV---SALVTVYARC 334
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM-ERGYGGDYVL 296
G LE +V + E +VV W +L+ + HG G + + EM ++G +
Sbjct: 335 GNLELGHRVFERM--EKRDVVSWNSLISSYGIHG---FGRKAIQIFKEMIDQGLSPSPIS 389
Query: 297 MYNILAGVWRYGDAE 311
++L G E
Sbjct: 390 FVSVLGACSHAGLVE 404
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/273 (21%), Positives = 106/273 (38%), Gaps = 56/273 (20%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I L K G L A + + P ++ +I TR N + L R
Sbjct: 51 NPLIQSLCKQGNLNQALQVLSQEPNPTQHTYELLILSCTRQNSLPQGIDLHR-------- 102
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
LIH ++ F ++ LI+ Y++ I +A
Sbjct: 103 -----------------------HLIHDGSDQDPF------LATKLINMYSELDSIDNAR 133
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
K+F+ ++ + W ++ + G G+E ++ + RM ++ + +R T+ VL AC
Sbjct: 134 KVFD--KTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKAC-- 189
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYG---------CLIDMLGRAGRLEQAEKVASGIP 251
+ E F ++ E+ I +G L+DM R G + A +V +P
Sbjct: 190 --VASEA--FVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMP 245
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKIL 284
+ NVV W ++ S +G + RK++
Sbjct: 246 --VKNVVSWSAMIACYSKNGKPLEALELFRKMM 276
>gi|218196348|gb|EEC78775.1| hypothetical protein OsI_19008 [Oryza sativa Indica Group]
Length = 580
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 179/314 (57%), Gaps = 12/314 (3%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVAC--- 77
++ K G+L AR +F+EM R+V +W ++ G + N ALALF R+
Sbjct: 143 TTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQE 202
Query: 78 --EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
EP+E+TI+A A Q G +++ +H + ++ G + ++ V N LID Y+KCG
Sbjct: 203 LPSREEPNEVTIVAALSACAQIGLLKDGMYVHEFAKRFGLDR-NVRVCNSLIDMYSKCGS 261
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ AL +F I E + LVS+ + I +MHG G +A+ F+ M + +P+ VT+L+VL
Sbjct: 262 LSRALDVFHSIKPEDRTLVSYNAAIQAHSMHGHGGDALRLFDEMPTRI-EPDGVTYLAVL 320
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
C+H GLV++GL+ F+ M V P++KHYG ++D+LGRAGRL +A +P
Sbjct: 321 CGCNHSGLVDDGLRVFNSM----RVAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFP-A 375
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
++V+W+TLLGA HG VE+ E K+ E+ GDYVL+ N+ A R+ D R+R
Sbjct: 376 DIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRD 435
Query: 316 VVDERNALKFPGRS 329
+ + K PG S
Sbjct: 436 TMRSNDVRKVPGFS 449
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 13/233 (5%)
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
P +++ A + D +H + G A + + L+D+YAKCG + SA K
Sbjct: 102 PDALSLSFALKASARCSDAHTTVQLHALVLRLGVAA-DVRLLTTLLDSYAKCGDLASARK 160
Query: 142 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL------KPNRVTFLSVL 195
+F++++V +++ +W S+++G A A+ F R+ +PN VT ++ L
Sbjct: 161 VFDEMTV--RDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAAL 218
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+AC+ GL+++G+ + + + + +++ LIDM + G L +A V I E
Sbjct: 219 SACAQIGLLKDGM-YVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDR 277
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
+V + + A S HG+ G R EM D V +L G G
Sbjct: 278 TLVSYNAAIQAHSMHGH---GGDALRLFDEMPTRIEPDGVTYLAVLCGCNHSG 327
>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
Length = 632
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 191/317 (60%), Gaps = 4/317 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FD + +++ +W M+ K G+LE A LF++MP RNVVSW+ +I Y+++N+
Sbjct: 301 EVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEE 360
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ LFR M+A +P + T+++V A Q G + + I+ +++ N L
Sbjct: 361 AVWLFREMIAAG-VDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNAL 419
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID +AKCG + A KLF++++ +N+VSW ++I A+HG +EA+ FE+++ + P
Sbjct: 420 IDMFAKCGDVGEASKLFDEMA--ERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVP 477
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+++TFL +L +CSH GLV EG ++F +M + P ++HY C+ID+LG+ G LE+A +V
Sbjct: 478 DQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEV 537
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
A G+P E + W LL AC HGNVE+G V K++E++ G YVLM I A +
Sbjct: 538 ARGMPME-ADEAGWGALLNACRMHGNVEIGACVADKLVELDPSDSGIYVLMSQIYASKNK 596
Query: 307 YGDAERLRRVVDERNAL 323
+ + LR + +R +
Sbjct: 597 WDQVKMLRMTMRDRGTV 613
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 144/297 (48%), Gaps = 32/297 (10%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
+++ N ++ L+ A +F+EMP R+VVSWT ++DGY R ++ A LF RMV
Sbjct: 177 SVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMV 236
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
P+ +T++A AI Q G + ++H Y + G A +++ N L+D + KCGC
Sbjct: 237 VVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGV-ARSVNLDNALVDMFGKCGC 295
Query: 136 IFSALKLFEDISVE-----------------------------RKNLVSWTSIISGFAMH 166
+ A ++F+ + V+ R+N+VSW+ +I+ ++
Sbjct: 296 VRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQL 355
Query: 167 GMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH 226
+EAV F M + P T +SVL+AC+ G ++ G ++ + ++ +
Sbjct: 356 NQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNL 415
Query: 227 YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
LIDM + G + +A K+ + NVV W T++ A + HG E R+ ++
Sbjct: 416 GNALIDMFAKCGDVGEASKLFDEMAER--NVVSWNTMIMAHAVHGQSEEAIRLFEQL 470
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 116/246 (47%), Gaps = 11/246 (4%)
Query: 44 PCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW-----QNG 98
P N ++ G+ R AL LFRR+V + + AV A G
Sbjct: 97 PGPNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGG 156
Query: 99 DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 158
+ IH K GF + V N L+ YA + A K+F+++ +++VSWT+
Sbjct: 157 TPSGGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMP--ERDVVSWTT 214
Query: 159 IISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE 217
++ G+A G+ EA F RM V ++PN VT ++ ++A GL+ G+ K V E
Sbjct: 215 LVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGI-MLHKYVTE 273
Query: 218 CEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGE 277
V + L+DM G+ G + A +V G+ E+ +V W +++ A + G++E E
Sbjct: 274 GGVARSVNLDNALVDMFGKCGCVRYAREVFDGM--EVKDVYSWTSMVNAYAKCGDLESAE 331
Query: 278 RVTRKI 283
++ + +
Sbjct: 332 QLFKDM 337
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 37/166 (22%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ SKLFDE+ ERN+V+WN MI G+ E A LFE++ N+V
Sbjct: 431 EASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIV-------------- 476
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
P +IT L + + +G V + + E F V
Sbjct: 477 ------------------PDQITFLGLLASCSHSGLVSEGR--RYFKEMEMFYRIEPRVE 516
Query: 124 N--CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 167
+ C+ID K G + A ++ + +E W ++++ MHG
Sbjct: 517 HYACMIDLLGKVGLLEEAFEVARGMPMEADE-AGWGALLNACRMHG 561
>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
Length = 602
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 111/316 (35%), Positives = 189/316 (59%), Gaps = 5/316 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
++V+W M+ GL + G ++ AR +F+ MP RN+VSW +I GY + +R AL +F M
Sbjct: 163 DVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMR 222
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
A E + + A G + + I+ + E+ G ++ ++D Y KCGC
Sbjct: 223 ALG-VEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIE-VDAKLATAVVDMYCKCGC 280
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ A +F+ S+ + L +W +I GFA+HG +A+E F +M+ + P+ VT L+VL
Sbjct: 281 VDEAWGVFD--SLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVL 338
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
AC+H G V EG ++ + +V + P +HYGC++D+ GRAG+L++A+KV +P +
Sbjct: 339 TACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMD-P 397
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
++ V LLGAC HG+V++GE + ++++++ G YVL+ N+LAG R+ + ++RR
Sbjct: 398 DLAVLGALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRR 457
Query: 316 VVDERNALKFPGRSLV 331
++DERN K GRS++
Sbjct: 458 LMDERNVSKEAGRSVI 473
>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 850
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/322 (38%), Positives = 186/322 (57%), Gaps = 9/322 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYTRMNRSNGALALF 71
+ N+V N +I K +++ AR++F+ + R+VV+WT +I GY++ +N AL L
Sbjct: 405 DENMVI-NQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELL 463
Query: 72 RRMVA--CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDT 129
M C+ T P+ TI A + + IH Y + NA + VSNCLID
Sbjct: 464 SEMFEEDCQ-TRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDM 522
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
YAKCG I A +F+++ KN V+WTS+++G+ MHG G+EA+ FE M+++ K + V
Sbjct: 523 YAKCGDIGDARLVFDNMM--EKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGV 580
Query: 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
T L VL ACSH G++++G+++F++M + V P +HY CL+D+LGRAGRL A ++
Sbjct: 581 TLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEE 640
Query: 250 IPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGD 309
+P E VVW LL C HG VE+GE +KI E+ G Y L+ N+ A R+ D
Sbjct: 641 MPME-PPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKD 699
Query: 310 AERLRRVVDERNALKFPGRSLV 331
R+R ++ + K PG S V
Sbjct: 700 VTRIRSLMRHKGIKKRPGCSWV 721
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 147/314 (46%), Gaps = 19/314 (6%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR----NVVSWTGIID 56
+ + + +F +P +++V+WN M+ G + G E A LFE+M +VV+W+ I
Sbjct: 279 MMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAIS 338
Query: 57 GYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEK---- 112
GY + AL + R+M++ +P+E+T+++V G + + + IH Y K
Sbjct: 339 GYAQRGLGYEALGVCRQMLS-SGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMD 397
Query: 113 --RGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 170
+ + V N LID YAKC + A +F+ +S + +++V+WT +I G++ HG
Sbjct: 398 LRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDAN 457
Query: 171 EAVENFERM--QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG 228
+A+E M + +PN T L AC+ + G + + + +
Sbjct: 458 KALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSN 517
Query: 229 CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
CLIDM + G + A V + + N V W +L+ HG GE EM R
Sbjct: 518 CLIDMYAKCGDIGDARLVFDNMMEK--NEVTWTSLMTGYGMHG---YGEEALGIFEEMRR 572
Query: 289 -GYGGDYVLMYNIL 301
G+ D V + +L
Sbjct: 573 IGFKLDGVTLLVVL 586
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 139/311 (44%), Gaps = 44/311 (14%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
N+ N ++ + G L AR +F+EMP +VVSW II+ Y ++ + AL +F +M
Sbjct: 161 NVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMT 220
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF--NAFHIHVSNCLIDTYAKC 133
P +IT++ V P G + HG+ N F V NCL+D YAK
Sbjct: 221 NEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMF---VGNCLVDMYAKF 277
Query: 134 G------CIFS-------------------------ALKLFEDISVE--RKNLVSWTSII 160
G +FS A++LFE + E + ++V+W++ I
Sbjct: 278 GMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAI 337
Query: 161 SGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEV 220
SG+A G+G EA+ +M +KPN VT +SVL+ C+ G + G + ++
Sbjct: 338 SGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMD 397
Query: 221 LPDIKH------YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
L H LIDM + +++ A + + + +VV W ++G S HG+
Sbjct: 398 LRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDAN 457
Query: 275 MGERVTRKILE 285
+ ++ E
Sbjct: 458 KALELLSEMFE 468
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 129/266 (48%), Gaps = 10/266 (3%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRN--VVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
+I+ + G L +A SL P + V W +I Y R+N L+ F M + +T
Sbjct: 65 LISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWT 124
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P T VF A + VR H GF + ++ V N L+ Y++CG + A
Sbjct: 125 -PDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMS-NVFVGNALVAMYSRCGSLSDAR 182
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFLSVLNACS 199
K+F+++ V ++VSW SII +A G K A+E F +M + +P+ +T ++VL C+
Sbjct: 183 KVFDEMPVW--DVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCA 240
Query: 200 HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVV 259
G G +F V E++ ++ CL+DM + G +++A V S +P + +VV
Sbjct: 241 SVGTRSLGKQFHGFAVTS-EMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMP--VKDVVS 297
Query: 260 WRTLLGACSFHGNVEMGERVTRKILE 285
W ++ S G E R+ ++ E
Sbjct: 298 WNAMVAGYSQIGRFEDAVRLFEQMQE 323
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 88/210 (41%), Gaps = 6/210 (2%)
Query: 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151
P I + + +LIH + F +++++ LI TY GC+ A+ L
Sbjct: 33 PFIHKCKTISQVKLIHQ--KLLSFGILTLNLTSHLISTYISLGCLSHAVSLLRRFPPSDA 90
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
+ W S+I + +G + + +F M + P+ TF V AC V G
Sbjct: 91 GVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCG-DSS 149
Query: 212 DKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ + ++ L+ M R G L A KV +P + +VV W +++ + + G
Sbjct: 150 HALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMP--VWDVVSWNSIIESYAKLG 207
Query: 272 NVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+M + K+ E G+ D + + N+L
Sbjct: 208 KPKMALEMFSKMTN-EFGFRPDDITLVNVL 236
>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 590
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 111/328 (33%), Positives = 186/328 (56%), Gaps = 5/328 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ LF+++P++N+V MITG K G+ + A+ LF+++PCR++ SW +I GY +
Sbjct: 218 FDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQN 277
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL L +M+ +P T+++V A ++ + H K G+ + I
Sbjct: 278 GSGEEALKLHSQMLKMG-MQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYES-RIS 335
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N LI Y KCG I + F I + ++VSW ++I+ FA HG A+ +F M+
Sbjct: 336 ICNALITMYCKCGSILDSELAFRQI--DHPDVVSWNAMIAAFARHGFYDRALASFGEMRS 393
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++P+ +TFLS+L+AC H G V E L +F+ M+E +++P +H+ CL+D+L R G++E
Sbjct: 394 NRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVE 453
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A K+ +P E + +W LL AC H NV++GE +KI+E+E G YV++ NI
Sbjct: 454 KAYKIIQEMPFE-ADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIY 512
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRS 329
A +G+ R+R ++ E+ K P S
Sbjct: 513 AAAGMWGEVTRVRGLMREQGVKKQPAYS 540
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 135/266 (50%), Gaps = 17/266 (6%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+ F +P+RN +WN MI+GLV++ +E A LFEEMP RNV+S+T ++DGY ++
Sbjct: 130 QYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQ 189
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQ-LIHGYGEKRGFNAFHIHVSNC 125
A ALF M + + ++ + +NG + L +K +I
Sbjct: 190 ARALFNCM-----PQKNVVSWTVMISGYVENGKFDEAENLFEQMPDK------NIVAMTA 238
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
+I Y K G A LF+ I ++L SW ++I+G+A +G G+EA++ +M K+ ++
Sbjct: 239 MITGYCKEGKTDKAKILFDQIPC--RDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQ 296
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
P+ T +SVL ACS ++EG K +V + I LI M + G + +E
Sbjct: 297 PDHSTLISVLTACSSLASLQEGRK-THVLVLKSGYESRISICNALITMYCKCGSILDSEL 355
Query: 246 VASGIPSEITNVVVWRTLLGACSFHG 271
I + +VV W ++ A + HG
Sbjct: 356 AFRQI--DHPDVVSWNAMIAAFARHG 379
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 133/310 (42%), Gaps = 45/310 (14%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
KLF +++ +NV I L + G + AR LF+EMP R+ VSW II GY + +
Sbjct: 40 KLFST---QDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYWKNGCFDE 96
Query: 67 ALALF-----------RRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY------ 109
+ LF M+A + F A+ Q +I G
Sbjct: 97 SKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRV 156
Query: 110 -GEKRGFNAF---HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 165
R F ++ ++D YAK G I A LF + +KN+VSWT +ISG+
Sbjct: 157 EEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFN--CMPQKNVVSWTVMISGYVE 214
Query: 166 HGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIK 225
+G EA FE+M N V +++ G ++ FD++ C D+
Sbjct: 215 NGKFDEAENLFEQMP----DKNIVAMTAMITGYCKEGKTDKAKILFDQI--PCR---DLA 265
Query: 226 HYGCLIDMLGRAGRLEQAEKVAS-----GIPSEITNVVVWRTLLGACSFHGNVEMGERVT 280
+ +I + G E+A K+ S G+ + + ++ ++L ACS +++ G +
Sbjct: 266 SWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLI---SVLTACSSLASLQEGRKT- 321
Query: 281 RKILEMERGY 290
+L ++ GY
Sbjct: 322 -HVLVLKSGY 330
>gi|449439631|ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/340 (36%), Positives = 194/340 (57%), Gaps = 15/340 (4%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
LK LFDE+P+ N+V WN ++ G V+ G+ + AR +F+EMP RNV +WT ++ G+ +
Sbjct: 181 LKRALYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQN 240
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ AL+LF +M E ++ ++A A + GD+ + IHGY E R + + H+
Sbjct: 241 GQCKLALSLFDQMRRAG-VELDQVALVAALSACAELGDLTLGKWIHGYVE-RTWRSRHLP 298
Query: 122 V----SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
V +N LI YA CG + A KLFE+I ++N VSW+SII+GFA G G EA+ F+
Sbjct: 299 VLVSLNNALIHMYASCGAMDLAYKLFEEI--PQRNTVSWSSIITGFAKQGCGVEAIRIFQ 356
Query: 178 RM---QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDML 234
M + ++P+ +TF+ L ACSH GL+ +G++ F M + V+P I+HYGC++D+L
Sbjct: 357 LMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSMHKTFGVIPQIEHYGCMVDLL 416
Query: 235 GRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI---LEMERGYG 291
RAG L +A + +P + N VW LL C H N E+ V + + ++
Sbjct: 417 SRAGLLTEALSLIESMPMKPNN-AVWGALLSGCRLHKNDEIVSHVAKHLSFEIDPNNQAA 475
Query: 292 GDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
G ++L+ N+ A R+ D +RR + + K GRS +
Sbjct: 476 GYFMLLANVYAADGRWQDTATVRRNMHDIGVKKPSGRSWI 515
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 128/290 (44%), Gaps = 45/290 (15%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV----- 75
N +++ + +G L A+ +FE++ + W II G+TR S ++ LF+RM
Sbjct: 63 NHLLSLYISFGSLGSAQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVE 122
Query: 76 -----------ACE----YTEPSEITILAVFPAIWQNGDVRNCQLIHGYGE--------- 111
AC + E +I + W N VR LI+ Y
Sbjct: 123 ANGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRT-NLINLYANGGDGGDFDL 181
Query: 112 KRGFNAF------HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 165
KR F ++ N L+ Y + G A K+F+++ +N+ +WT +++GFA
Sbjct: 182 KRALYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEM--PERNVRTWTIMVAGFAQ 239
Query: 166 HGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEEC---EVLP 222
+G K A+ F++M++ ++ ++V ++ L+AC+ G + G K+ VE LP
Sbjct: 240 NGQCKLALSLFDQMRRAGVELDQVALVAALSACAELGDLTLG-KWIHGYVERTWRSRHLP 298
Query: 223 D-IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ LI M G ++ A K+ IP N V W +++ + G
Sbjct: 299 VLVSLNNALIHMYASCGAMDLAYKLFEEIPQR--NTVSWSSIITGFAKQG 346
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 11/190 (5%)
Query: 101 RNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 160
RN H GF+ + ++ N L+ Y G + SA K+FEDI+ + W II
Sbjct: 41 RNLAKTHAQIVVSGFSQKN-YILNHLLSLYISFGSLGSAQKVFEDITAPSTTV--WNQII 97
Query: 161 SGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEV 220
G K+++E F+RM ++ N T+ +L+AC L EG + +++
Sbjct: 98 KGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRVLVN-GY 156
Query: 221 LPDIKHYGCLIDMLGRAG-----RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEM 275
++ LI++ G L++A + +P +NVV W +LL G+ +
Sbjct: 157 WSNLYVRTNLINLYANGGDGGDFDLKRALYLFDEMPD--SNVVGWNSLLAGYVRRGDFDG 214
Query: 276 GERVTRKILE 285
+V ++ E
Sbjct: 215 ARKVFDEMPE 224
>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 661
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/325 (36%), Positives = 189/325 (58%), Gaps = 4/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FD + +++ +W M+ K G+LE A LF++MP RN VSW+ +I Y++ N+
Sbjct: 299 EVFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEE 358
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ LF+ M+ E EP +++V A Q G + + I+ G +++ N
Sbjct: 359 AVRLFKAMIE-EGVEPINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLTVNLGNAF 417
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YAKCG +A KLF +++ +N+VSW S+I A+HG +E + FE+++ + P
Sbjct: 418 IDVYAKCGDFDAASKLFAEMA--ERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVP 475
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +TFL +L+ACSH GLV EG ++F +M + P +HY C+ID+LG+ G LE+A +V
Sbjct: 476 DEITFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEPKSEHYACMIDLLGKIGLLEEAFEV 535
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
A G+P E T+ W LL AC +GNVE+GE K++++ G YVLM I A +
Sbjct: 536 AKGMPME-TDEAGWGALLNACRMYGNVEIGEFAADKLVQLNPLDSGIYVLMSQIYASKNK 594
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ + LR ++ ER K PG S +
Sbjct: 595 WDQVKILRVLMRERGVKKNPGCSSI 619
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 145/291 (49%), Gaps = 36/291 (12%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
++++ N ++ L +AR+LF+EMP R+VVSWT ++DGY R ++ A +F RM
Sbjct: 174 QSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRM 233
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLID------ 128
V +P+E+T++AV A+ Q G + ++++ Y G +++ N LID
Sbjct: 234 VVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGR-SVNLENALIDMFGKFG 292
Query: 129 -------------------------TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 163
YAKCG + SA +LF+D+ R+N VSW+ +I+ +
Sbjct: 293 CAASAREVFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDMP--RRNAVSWSCMIAAY 350
Query: 164 AMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD 223
+ +EAV F+ M + ++P +SVL+AC+ G ++ G +D V + +
Sbjct: 351 SQANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLT 410
Query: 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
+ ID+ + G + A K+ + + NVV W +++ A + HG E
Sbjct: 411 VNLGNAFIDVYAKCGDFDAASKLFAEMAER--NVVSWNSMIMAHAVHGQSE 459
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 111/238 (46%), Gaps = 12/238 (5%)
Query: 47 NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAI--WQNGDVRNCQ 104
N ++ + R + A ALFRR++ + + A+ A ++ +
Sbjct: 101 NAYMLATMMRAFLRARLPSRASALFRRVIRESLPADARTLVFAIKAAASEHEHHSPSGGE 160
Query: 105 LIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFA 164
+H K G A + V N L+ YA + A LF+++ +++VSWT+++ G+A
Sbjct: 161 GVHCVALKWGHVAQSVLVGNALVHFYANHRSLAHARNLFDEMP--DRDVVSWTTLVDGYA 218
Query: 165 MHGMGKEAVENFERMQKVV---LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVL 221
G+ EA F RM VV L+PN VT ++V++A GL+ G + + V + V
Sbjct: 219 RRGLADEAWRVFCRM--VVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVY-RYVADGGVG 275
Query: 222 PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERV 279
+ LIDM G+ G A +V + + +V W T++ A + G++E R+
Sbjct: 276 RSVNLENALIDMFGKFGCAASAREVFDSM--AVKDVYSWTTMVNAYAKCGDLESAARL 331
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 66/170 (38%), Gaps = 47/170 (27%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
SKLF E+ ERN+V+WN MI G+ E LFE++ +V
Sbjct: 430 ASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIV--------------- 474
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDV-------RNCQLIHGYGEKRGFNA 117
P EIT L + A +G V + +LI+G K A
Sbjct: 475 -----------------PDEITFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEPKSEHYA 517
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 167
C+ID K G + A ++ + + +E W ++++ M+G
Sbjct: 518 -------CMIDLLGKIGLLEEAFEVAKGMPMETDE-AGWGALLNACRMYG 559
>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
Length = 1309
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 185/305 (60%), Gaps = 5/305 (1%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
++ VK E+E AR LF++M R++V+WT +I GY ++N +L LF +M E P
Sbjct: 201 LVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMRE-EGVVP 259
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
++ ++ V A + G + ++I Y +++ F + + +ID YAKCGC+ SA ++
Sbjct: 260 DKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQ-LDVILGTAMIDMYAKCGCVESAREI 318
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202
F+ +E KN++SW+++I+ + HG G++A++ F M + P+++T S+L ACSH G
Sbjct: 319 FD--RMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAG 376
Query: 203 LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
LVEEGL+FF M E+ V D+KHY C++D+LGRAGRL++A K+ + E + +W
Sbjct: 377 LVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIE-KDEGLWGA 435
Query: 263 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNA 322
LGAC H +V + E+ +LE++ G YVL+ NI A R+ D ++R ++ +R
Sbjct: 436 FLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRL 495
Query: 323 LKFPG 327
K PG
Sbjct: 496 KKTPG 500
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 181/296 (61%), Gaps = 5/296 (1%)
Query: 32 ELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVF 91
E+E AR LF++M R++V+WT +I GY +N +L LF +M E P ++ ++ V
Sbjct: 886 EIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMRE-EGVVPDKVAMVTVV 944
Query: 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151
A + G + + I Y +++ F + + +ID +AKCGC+ SA ++F+ +E K
Sbjct: 945 FACAKLGAMHKARTIDDYIQRKKFQ-LDVILGTAMIDMHAKCGCVESAREIFD--RMEEK 1001
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
N++SW+++I+ + HG G++A++ F M + + PN++T +S+L ACSH GLVEEGL+FF
Sbjct: 1002 NVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFF 1061
Query: 212 DKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
M E+ V D+KHY C++D+LGRAGRL++A K+ + E + +W LGAC H
Sbjct: 1062 SXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXE-KDEGLWGAFLGACRTHK 1120
Query: 272 NVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPG 327
+V + E+ +LE++ G Y+L+ NI A R+ D ++R ++ +R K PG
Sbjct: 1121 DVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKIPG 1176
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 128/257 (49%), Gaps = 7/257 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
N+V N +I + L+ A LF+ M R+ VSW+ ++ G+ ++ FR ++
Sbjct: 93 NIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELI 152
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
C P T+ V A +++ +LIH K G + H V L+D Y KC
Sbjct: 153 RCG-ARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHF-VCAALVDMYVKCRE 210
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
I A LF+ ++ ++LV+WT +I G+A G E++ FE+M++ + P++V ++V+
Sbjct: 211 IEDARFLFD--KMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVV 268
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
AC+ G + + + D ++ + D+ +IDM + G +E A ++ + E
Sbjct: 269 FACAKLGAMHKA-RIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRM--EEK 325
Query: 256 NVVVWRTLLGACSFHGN 272
NV+ W ++ A +HG
Sbjct: 326 NVISWSAMIAAYGYHGQ 342
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 128/258 (49%), Gaps = 7/258 (2%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
+NL+ N ++ + L+ A LF+ M R+ VSW+ ++ G+ ++ FR +
Sbjct: 768 QNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFREL 827
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
+ C P T+ V A +++ +LIH K G + H V L+D Y KC
Sbjct: 828 IRCG-ARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHF-VCAALVDMYGKCR 885
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
I A LF+ + ++LV+WT +I G+A G E++ F++M++ + P++V ++V
Sbjct: 886 EIEDARFLFDKMX--ERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTV 943
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
+ AC+ G + + + D ++ + D+ +IDM + G +E A ++ + E
Sbjct: 944 VFACAKLGAMHKA-RTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRM--EE 1000
Query: 255 TNVVVWRTLLGACSFHGN 272
NV+ W ++ A +HG
Sbjct: 1001 KNVISWSAMIAAYGYHGQ 1018
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 96/220 (43%), Gaps = 16/220 (7%)
Query: 6 SKLFDELPER-----NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
+++ D+ +R +++ MI K G +E AR +F+ M +NV+SW+ +I Y
Sbjct: 280 ARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGY 339
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRN-CQLIHGYGEKRGFNAFH 119
+ AL LF M++ P +IT+ ++ A G V + E
Sbjct: 340 HGQGRKALDLFPMMLSSGML-PDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDV 398
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKEAVENF 176
H + C++D + G + ALKL + +++E+ + W + + H + ++A +
Sbjct: 399 KHYT-CVVDLLGRAGRLDEALKLIKSMTIEKDEGL-WGAFLGACRTHKDVVLAEKAATSL 456
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVE 216
+Q P LS N ++ G E+ K D M +
Sbjct: 457 LELQS--QNPGHYVLLS--NIYANAGRWEDVAKIRDLMSQ 492
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 89/211 (42%), Gaps = 19/211 (9%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ +++ MI K G +E AR +F+ M +NV+SW+ +I Y + AL LF
Sbjct: 969 QLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPM 1028
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRN-----CQLIHGYGEKRGFNAFHIHVSNCLID 128
M+ P++IT++++ A G V + Y + + C++D
Sbjct: 1029 MLRSGIL-PNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHY-----TCVVD 1082
Query: 129 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKEAVENFERMQKVVLK 185
+ G + ALKL ++ E+ + W + + H + ++A + +Q
Sbjct: 1083 LLGRAGRLDEALKLIXSMTXEKDEGL-WGAFLGACRTHKDVXLAEKAATSLLELQP--QN 1139
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVE 216
P LS N ++ G E+ K D M +
Sbjct: 1140 PGHYILLS--NIYANAGRWEDVAKIRDLMSQ 1168
>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 820
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 180/311 (57%), Gaps = 5/311 (1%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N + K G LE R +F+ M R++VSWT ++ Y++ + ALA F M E
Sbjct: 465 NAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMRE-EGF 523
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P++ T +V + + + +HG K G + + + LID YAKCG I A
Sbjct: 524 APNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKC-IESALIDMYAKCGSITEAG 582
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
K+F+ IS ++VSWT+IISG+A HG+ ++A++ F RM+ +K N VT L VL ACSH
Sbjct: 583 KVFDKIS--NPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSH 640
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
GG+VEEGL +F +M + V+P+++HY C+ID+LGR GRL+ A + +P E N +VW
Sbjct: 641 GGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPME-PNEMVW 699
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320
+TLLG C HGNVE+GE RKIL + Y YVL+ N Y D LR V+ ++
Sbjct: 700 QTLLGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQ 759
Query: 321 NALKFPGRSLV 331
K PG S +
Sbjct: 760 GVKKEPGYSWI 770
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 168/359 (46%), Gaps = 64/359 (17%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEE--MPCRNVVSWTGIIDGYTRMNRSNGALALF 71
E N++ +I K G L ARS+F+ + C W +I GY++ S AL L+
Sbjct: 354 EGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELY 413
Query: 72 RRMVACEYTEPSEI-TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTY 130
+M C+ S++ T +VF AI + ++ +++HG K G + + V+N + D Y
Sbjct: 414 VQM--CQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAY 471
Query: 131 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVT 190
+KCG + K+F+ + E +++VSWT++++ ++ +G+EA+ F M++ PN+ T
Sbjct: 472 SKCGFLEDVRKVFDRM--EERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFT 529
Query: 191 FLSVLNACS-----------HGGLVEEGL------------------------KFFDKMV 215
F SVL +C+ HG L + GL K FDK+
Sbjct: 530 FSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKIS 589
Query: 216 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKV-----ASGIPSEITNVVVWRTLLGACSFH 270
PDI + +I + G +E A ++ SGI + N V +L ACS
Sbjct: 590 N-----PDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKA---NAVTLLCVLFACSHG 641
Query: 271 GNVEMGERVTRKILEMERGYG-----GDYVLMYNILAGVWRYGDA-ERLRRVVDERNAL 323
G VE G + +ME GYG Y + ++L V R DA E +R++ E N +
Sbjct: 642 GMVEEGLFYFQ---QMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEM 697
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 98/219 (44%), Gaps = 7/219 (3%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
K E A +F+EMP RNV SWT +I G T F M+ P +
Sbjct: 167 KCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGIL-PDKFAYS 225
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
A+ + + +++H RGF A HI VS L++ YAK G I + +F ++
Sbjct: 226 AIIQSCIGLDSLELGKMVHAQIVMRGF-ATHIFVSTSLLNMYAKLGSIEDSYWVFNMMT- 283
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
N VSW ++ISG +G+ EA + F RM+ PN T +SV A G LV+ +
Sbjct: 284 -EHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAV--GKLVDVNM 340
Query: 209 -KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
K E + ++ LIDM + G L A V
Sbjct: 341 GKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSV 379
>gi|345505204|gb|AEN99826.1| chlororespiratory reduction 4, partial [Aethionema cordifolium]
Length = 587
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/331 (35%), Positives = 193/331 (58%), Gaps = 6/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D LF +P R++VTW MI G K G + A++LF++MP R+VV++ ++ GY +
Sbjct: 246 MEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQN 305
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL +F M + P E T++ V AI Q G + ++ Y ++ F
Sbjct: 306 KYHMEALEIFNNMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMNKYIVEKSF-PLGGK 364
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LID ++KCG I A+ +FE I + K++ W ++I G A+HG G+ A + ++++
Sbjct: 365 LGVALIDMHSKCGSIQQAISVFEGI--KNKSIDHWNAMIGGLAIHGHGELAFDMLMQIER 422
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KP+ +TF+ VLNACSH GLV+EGL F+ M + ++ P ++HYGC++D+L R+G +E
Sbjct: 423 CSIKPDDITFIGVLNACSHSGLVKEGLLSFELMRRKHKIEPRLQHYGCIVDILSRSGSIE 482
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG-GDYVLMYNI 300
A+ + +P E N V+WRT L AC E+GE V + ++ ++ GY YVL+ N+
Sbjct: 483 LAKHLIEDMPME-PNDVIWRTFLIACRNRKEFEIGELVAKHLI-LQAGYNPSSYVLLSNM 540
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + + D R+R ++ +R K PG S +
Sbjct: 541 YASLGMWKDVRRVRMMMKQRKLHKIPGCSWI 571
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 146/286 (51%), Gaps = 22/286 (7%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDGYTRMNRS 64
++FD +P+R+ V++N MI G VK G + AR LF+ MP +N++SW +I GY + +
Sbjct: 155 QIFDRMPQRDSVSYNSMIDGYVKCGLIGSARELFDLMPKEMKNLISWNSMISGYAQTSDG 214
Query: 65 -NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
N A LF E E I+ ++ ++G + + + + +R +
Sbjct: 215 VNIASKLF-----AEMPEKDLISWNSLIDGYVKHGRMEDAKDLFYVMPRRDVVTW----- 264
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK-V 182
+ID YAK G + A LF+ + +++V++ S+++G+ + EA+E F M+K
Sbjct: 265 ATMIDGYAKLGFVHKAKTLFDQMP--HRDVVAYNSMMAGYVQNKYHMEALEIFNNMEKDS 322
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
L P+ T + VL+A + G + + + +VE+ L K LIDM + G ++Q
Sbjct: 323 HLSPDETTLVIVLSAIAQLGRLSKAMSMNKYIVEKSFPLGG-KLGVALIDMHSKCGSIQQ 381
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
A V GI ++ ++ W ++G + HG+ GE ++++ER
Sbjct: 382 AISVFEGIKNK--SIDHWNAMIGGLAIHGH---GELAFDMLMQIER 422
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 14/215 (6%)
Query: 51 WTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYG 110
W +I ++ AL F M+ + ++ V A + G V+ IHG+
Sbjct: 67 WNAVIKSHSHGVDPKRALIWFCLMLE-NGVSVDKFSLSLVLKACSRLGFVQEGMQIHGFL 125
Query: 111 EKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 170
K G + + + NCLI Y KCGC+ A ++F+ + +++ VS+ S+I G+ G+
Sbjct: 126 RKTGIWS-DLFLQNCLIGLYLKCGCLGFARQIFD--RMPQRDSVSYNSMIDGYVKCGLIG 182
Query: 171 EAVENFERMQKVVLKPNRVTFLSVLNACSHGGL-VEEGLKFFDKMVEECEVLPDIKHYGC 229
A E F+ M K + N +++ S+++ + V K F +M E+ D+ +
Sbjct: 183 SARELFDLMPKEM--KNLISWNSMISGYAQTSDGVNIASKLFAEMPEK-----DLISWNS 235
Query: 230 LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
LID + GR+E A+ + +P +VV W T++
Sbjct: 236 LIDGYVKHGRMEDAKDLFYVMPRR--DVVTWATMI 268
>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 178/309 (57%), Gaps = 5/309 (1%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N + K G LE R +F M R+++SWT ++ Y++ + + A+ +F M A E
Sbjct: 415 NAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRA-EGI 473
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P++ T +V + + Q +HG K G + + + L+D YAKCGC+ A
Sbjct: 474 APNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKC-IESALVDMYAKCGCLGDAK 532
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
K+F IS + VSWT+II+G A HG+ +A++ F RM ++ ++PN VTFL VL ACSH
Sbjct: 533 KVFNRIS--NADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSH 590
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
GGLVEEGL++F M + ++P+++HY C++D+L R G L A + S +P E N +VW
Sbjct: 591 GGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVE-PNEMVW 649
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320
+TLLGAC HGNVE+GE +KIL + YVL+ N Y D LR V+ E+
Sbjct: 650 QTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHVMKEQ 709
Query: 321 NALKFPGRS 329
K PG S
Sbjct: 710 GVKKEPGCS 718
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 111/240 (46%), Gaps = 4/240 (1%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
K E+E + +F M NVVSW +I G+T + A LF RM+ E P T +
Sbjct: 218 KLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMG-EGVTPDAQTFI 276
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
V AI DV + + GY + G ++ + V LID +KCG + A +F +
Sbjct: 277 GVAKAIGMLRDVNKAKEVSGYALELGVDS-NTLVGTALIDMNSKCGSLQEARSIFNSHFI 335
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
+ W ++ISG+ G ++A+E F +M + + + T+ SV NA + + G
Sbjct: 336 TCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGK 395
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
K + ++ + + + + + G LE KV + + E +++ W +L+ A S
Sbjct: 396 KVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRM--EDRDLISWTSLVTAYS 453
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 98/233 (42%), Gaps = 5/233 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+LV N + K +++ A LF++M RN SWT +I G F
Sbjct: 102 HHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCE 161
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M + + P + + + ++H RGF + H VS L++ YAK
Sbjct: 162 MQS-QGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTS-HTFVSTALLNMYAKL 219
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
I + K+F ++ N+VSW ++I+GF + + +A + F RM + P+ TF+
Sbjct: 220 QEIEDSYKVFNTMT--EVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIG 277
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
V A V + K E V + LIDM + G L++A +
Sbjct: 278 VAKAIGMLRDVNKA-KEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSI 329
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 14/170 (8%)
Query: 100 VRNCQLIHGYGEKRGFNAFH-IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 158
++ + +HG+ K F+ H + + N + Y+KC I +A +LF+ +S ++N SWT
Sbjct: 84 LKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMS--QRNTFSWTV 141
Query: 159 IISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEEC 218
+I+G A +G+ + E F MQ + P++ + +L C +E G MV
Sbjct: 142 LIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELG-----NMVHAQ 196
Query: 219 EVLPDIKHY----GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
V+ + L++M + +E + KV + + NVV W ++
Sbjct: 197 IVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTE--VNVVSWNAMI 244
>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
Length = 704
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/326 (36%), Positives = 192/326 (58%), Gaps = 6/326 (1%)
Query: 7 KLFDELP-ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 65
KL D+L + ++ N +I+ K ++ A +F+ + + +VSW +I GY + N
Sbjct: 256 KLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVN 315
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
AL F M + +P T+++V PA+ + R + IHG +R F ++ V
Sbjct: 316 EALNAFCEMQS-RNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRR-FLDKNVFVMTA 373
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
L+D YAKCG I +A KLF+ ++ +++++W ++I G+ HG+GK +VE F+ M+K +K
Sbjct: 374 LVDMYAKCGAIHTARKLFDMMNA--RHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIK 431
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN +TFL L+ACSH GLVEEGL FF+ M ++ + P + HYG ++D+LGRAGRL QA
Sbjct: 432 PNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWD 491
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
+P + + V+ +LGAC H NV++GE+ +I ++ GG +VL+ NI A
Sbjct: 492 FIQKMPIK-PGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATAS 550
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
+G ++R ++++ K PG SLV
Sbjct: 551 MWGKVAKVRTIMEKSGLQKTPGCSLV 576
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 137/251 (54%), Gaps = 12/251 (4%)
Query: 19 TWNVM-ITGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+WN+ +TG+V K ++ A ++F+ MP R++V W +I GY + + AL L R
Sbjct: 62 SWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLR 121
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M + E P ITI+++ PA+ +R +HGY + GF + ++VS L+D Y+KC
Sbjct: 122 M-SEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESL-VNVSTALVDMYSKC 179
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + A +F+ ++ + +VSW S+I G+ G + A+ F++M ++P VT +
Sbjct: 180 GSVSIARVIFD--GMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMG 237
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
L+AC+ G +E G KF K+V++ ++ D+ LI M + R++ A + + ++
Sbjct: 238 ALHACADLGDLERG-KFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNK 296
Query: 254 ITNVVVWRTLL 264
+V W ++
Sbjct: 297 --TLVSWNAMI 305
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 132/261 (50%), Gaps = 10/261 (3%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
K G + AR +F+ M R VVSW +IDGY + + GA+ +F++M+ E +P+ +T++
Sbjct: 178 KCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLD-EGVQPTNVTVM 236
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
A GD+ + +H ++ ++ + V N LI Y+KC + A +F+++
Sbjct: 237 GALHACADLGDLERGKFVHKLVDQLKLDS-DVSVMNSLISMYSKCKRVDIAADIFKNL-- 293
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
K LVSW ++I G+A +G EA+ F MQ +KP+ T +SV+ A + + +
Sbjct: 294 RNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQA- 352
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
K+ +V + ++ L+DM + G + A K+ + + +V+ W ++
Sbjct: 353 KWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNAR--HVITWNAMIDGYG 410
Query: 269 FHGNVEMGERVTRKILEMERG 289
HG +G+ EM++G
Sbjct: 411 THG---LGKTSVELFKEMKKG 428
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 124/270 (45%), Gaps = 14/270 (5%)
Query: 54 IIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR 113
++ GY + + + AL+ F RM + P + N D++ + IHG
Sbjct: 1 MLKGYAKSSSLDSALSFFSRM-KHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITS 59
Query: 114 GFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAV 173
GF ++++ +++ YAKC I A +F+ + ++LV W ++ISG+A +G K A+
Sbjct: 60 GF-SWNLFAMTGVVNMYAKCRQINDAYNMFD--RMPERDLVCWNTMISGYAQNGFAKVAL 116
Query: 174 ENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE-CEVLPDIKHYGCLID 232
RM + +P+ +T +S+L A + L+ G+ ++ E L ++ L+D
Sbjct: 117 MLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVS--TALVD 174
Query: 233 MLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG 292
M + G + A + G+ VV W +++ G+ E + +K+L + G
Sbjct: 175 MYSKCGSVSIARVIFDGMDHR--TVVSWNSMIDGYVQSGDAEGAMLIFQKML--DEGVQP 230
Query: 293 DYVLMYNILAGVWRYGDAER---LRRVVDE 319
V + L GD ER + ++VD+
Sbjct: 231 TNVTVMGALHACADLGDLERGKFVHKLVDQ 260
>gi|347954504|gb|AEP33752.1| chloroplast biogenesis 19, partial [Lobularia maritima]
Length = 496
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 120/325 (36%), Positives = 185/325 (56%), Gaps = 6/325 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FD + +N +TWN MI G ++ G+++ A LF+EMP R ++SWT +I+G+ + A
Sbjct: 127 VFDHMEGKNSMTWNTMIDGYMRKGKIDDAYKLFDEMPERGLISWTAMINGFVKKGFHEEA 186
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L FR M + EP + I+AV A G + +H Y R F ++ V+N I
Sbjct: 187 LVWFREMQSSG-VEPDYVAIIAVLAACTNLGALSFGLWVHRYLVSRDFRN-NVRVNNSSI 244
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D + +CGC+ A +F+ + E++ +VSW S+I F+ +G E++ F RMQ+ KPN
Sbjct: 245 DLHCRCGCVELAQPVFDHM--EKRTVVSWNSVIVVFSANGHADESLVYFRRMQEEGFKPN 302
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
VTF L ACSH GLVEEGL++F M +E + P I+HYGCL+D+ RAGRLE A V
Sbjct: 303 AVTFTGALTACSHVGLVEEGLRYFQTMKKEYRISPRIEHYGCLVDLYSRAGRLEDALNVV 362
Query: 248 SGIPSEITNVVVWRTLLGACSFHG-NVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P + VV+ +LL AC HG N + ER+ + + + +YV++ N+ A +
Sbjct: 363 QSMPMKPNEVVIG-SLLAACRTHGNNTVLAERLMKHLSDTNVKSHSNYVILSNMYAADGK 421
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ A ++RR + K PG S +
Sbjct: 422 WEGASKMRRKMKGLGLKKQPGFSSI 446
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 117/267 (43%), Gaps = 39/267 (14%)
Query: 41 EEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAI--WQNG 98
+++ +SWT I +R R A F M EP+ IT +A+ + +G
Sbjct: 25 QKLNLSTTISWTSRITLLSRNGRLAEAAKEFSDMRFAG-VEPNHITFIALLSGCGDFSSG 83
Query: 99 DVRNCQLIHGYGEKRGFNAFHIHVS-------------------------------NCLI 127
L+HGY K G + H+ V N +I
Sbjct: 84 SESFGDLLHGYACKLGLDRNHVMVGTAIIGMYSKHGRVSKARLVFDHMEGKNSMTWNTMI 143
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y + G I A KLF+++ + L+SWT++I+GF G +EA+ F MQ ++P+
Sbjct: 144 DGYMRKGKIDDAYKLFDEMP--ERGLISWTAMINGFVKKGFHEEALVWFREMQSSGVEPD 201
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
V ++VL AC++ G + GL +V + +++ ID+ R G +E A+ V
Sbjct: 202 YVAIIAVLAACTNLGALSFGLWVHRYLVSR-DFRNNVRVNNSSIDLHCRCGCVELAQPVF 260
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVE 274
+ E VV W +++ S +G+ +
Sbjct: 261 DHM--EKRTVVSWNSVIVVFSANGHAD 285
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 131/331 (39%), Positives = 192/331 (58%), Gaps = 5/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L ++F+ + R++ +W ++ G K G+L AR LF+EMP RN+VSW +I GY++
Sbjct: 304 LTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNIVSWNAMIAGYSQN 363
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIH-GYGEKRGFNAFHI 120
++ AL LF MV P+E T++ V A Q G + Q IH + K G I
Sbjct: 364 SQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVNKIGIQVSLI 423
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+ N ++D YAKCG I +A KLF S+ KNLVSW S+IS +A +G K+A+ F++M
Sbjct: 424 -LKNAVMDMYAKCGSIDAAAKLFH--SMPEKNLVSWNSMISAYASYGHAKKALTLFDQMI 480
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
LKP+ +TF+ VL+ACS+GG V EG F+ M V P +HY C++D+L R G L
Sbjct: 481 GSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENCFGVEPKREHYACMVDLLSRVGLL 540
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
++A ++ S +P E + W LL AC HGNVEM + K+LE++ G Y L+ NI
Sbjct: 541 KEAYELISRMPMEASE-GGWGALLDACRKHGNVEMAKLAGEKLLELDPEDSGIYSLLANI 599
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ D +RR++ ER K PG SL+
Sbjct: 600 CADGKKWKDVRMVRRMMRERGVKKVPGHSLI 630
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 161/325 (49%), Gaps = 37/325 (11%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ +L N +I V+ G L +AR +F+E ++VV+WT +I+GY R N + A+ALF
Sbjct: 184 DSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNS 243
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M++ + +P+E+T++A+ A Q GD + +H + ++ +++ N ++D Y KC
Sbjct: 244 MLSSD-VKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITC-SLNLLNAMLDMYVKC 301
Query: 134 GCIFSALKLFE---------------------DISVERK--------NLVSWTSIISGFA 164
GC+ +A ++F D+ RK N+VSW ++I+G++
Sbjct: 302 GCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNIVSWNAMIAGYS 361
Query: 165 MHGMGKEAVENFERMQKVV-LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD 223
+ EA+E F M VV L P T + VL+A G +E G + V + +
Sbjct: 362 QNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVNKIGIQVS 421
Query: 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
+ ++DM + G ++ A K+ +P + N+V W +++ A + +G+ + + ++
Sbjct: 422 LILKNAVMDMYAKCGSIDAAAKLFHSMPEK--NLVSWNSMISAYASYGHAKKALTLFDQM 479
Query: 284 LEMERGYGGDYVLMYNILAGVWRYG 308
+ G D++ +L+ YG
Sbjct: 480 I--GSGLKPDHITFIGVLSAC-SYG 501
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 131/274 (47%), Gaps = 15/274 (5%)
Query: 26 GLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEI 85
L G++ YA +F++ N W +I GY + N + + FR+M+ E
Sbjct: 95 ALSDSGDIHYAHLIFDQTELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIR-NRAEFDSG 153
Query: 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFED 145
+ + A Q + +H KRGF++ + V N LI Y + GC+ A ++F++
Sbjct: 154 SFVFALKACGQFAEKIVGMAVHSVIWKRGFDS-DLFVQNGLIQNYVETGCLGFARQMFDE 212
Query: 146 ISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVE 205
SV K++V+WT++I+G+A + EA+ F M +KPN VT +++L+ACS G E
Sbjct: 213 SSV--KDVVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSE 270
Query: 206 EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
G K + + ++ + ++DM + G L A ++ + + E +V W +LL
Sbjct: 271 MG-KTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNM--ERRDVFSWTSLLN 327
Query: 266 ACSFHGNV--------EMGERVTRKILEMERGYG 291
+ +G++ EM ER M GY
Sbjct: 328 GYAKNGDLGSARKLFDEMPERNIVSWNAMIAGYS 361
>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 613
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 192/332 (57%), Gaps = 7/332 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGL-VKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
+ D +FD + +R++ TWNVMI + K G +E AR +F+ MP RNVV WT +I GYT+
Sbjct: 249 VDDARSVFDGMRQRDVATWNVMIGVMYAKCGLVEDARKVFDAMPERNVVCWTSMISGYTQ 308
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+ + A+ LFR M + + TI V + Q G + + +H Y + G I
Sbjct: 309 VGKFKQAVKLFRDM-QISGVKADDATIATVVSSCGQMGALDLGRYVHAYCDVHGLGK-GI 366
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V N LID Y+KCG I A ++F + V+R + SWT +I GFA++G+ EA++ F +M+
Sbjct: 367 SVKNSLIDMYSKCGDIKKAHEIFRGL-VKRDDF-SWTVMIMGFAVNGLSGEALDLFAQME 424
Query: 181 KV-VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+ + PN +TFL VL +CSHGGLVE+G F +M + + P I+HYGC++D+LGRA
Sbjct: 425 EEGEVMPNEITFLGVLTSCSHGGLVEQGYHHFHRMSKVYGIAPRIEHYGCMVDLLGRAKL 484
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
L +AE+ +P +V +WR+LL AC G V + E V ++ E+E G VL+ N
Sbjct: 485 LAEAEQFIEEMPIA-PDVAIWRSLLFACRARGEVGLAEYVAERVEELEPSRCGGNVLLSN 543
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ A R+ D ++R + K PG S++
Sbjct: 544 VYATTSRWVDVNKVRTGMGRSRVSKRPGCSVI 575
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 121/255 (47%), Gaps = 23/255 (9%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D ++FD L ++ +N MI ++ GE+E A LFE MP RN + ++ GY+
Sbjct: 155 LDDARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVMPERNTHTLMEMVGGYSAR 214
Query: 62 NRSNGALALFR------RMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF 115
+ A +F MV C A+ + G V + + + +R
Sbjct: 215 GDMDSAKHVFEMANGVVNMVLC----------TAMISGFAKTGSVDDARSVFDGMRQRDV 264
Query: 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
+++ + YAKCG + A K+F+ ++ +N+V WTS+ISG+ G K+AV+
Sbjct: 265 ATWNVMIGV----MYAKCGLVEDARKVFD--AMPERNVVCWTSMISGYTQVGKFKQAVKL 318
Query: 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
F MQ +K + T +V+++C G ++ G ++ + + I LIDM
Sbjct: 319 FRDMQISGVKADDATIATVVSSCGQMGALDLG-RYVHAYCDVHGLGKGISVKNSLIDMYS 377
Query: 236 RAGRLEQAEKVASGI 250
+ G +++A ++ G+
Sbjct: 378 KCGDIKKAHEIFRGL 392
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 101/248 (40%), Gaps = 42/248 (16%)
Query: 67 ALALFRRM-VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
A+AL+ +M C P T+ +V A + +R + +H + K GF ++
Sbjct: 86 AVALYAQMHRGCPGVRPLTFTVSSVLKAAARREMLREGEQVHVHVFKNGFQTDE-RIATT 144
Query: 126 LIDTYAKCGCIFSALKLFEDISVE-----------------------------RKNLVSW 156
L+D YA+CG + A ++F+ + V+ +N +
Sbjct: 145 LVDLYARCGRLDDARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVMPERNTHTL 204
Query: 157 TSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVE 216
++ G++ G A FE VV N V ++++ + G V++ FD M +
Sbjct: 205 MEMVGGYSARGDMDSAKHVFEMANGVV---NMVLCTAMISGFAKTGSVDDARSVFDGMRQ 261
Query: 217 ECEVLPDIKHYGCLID-MLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEM 275
D+ + +I M + G +E A KV +P NVV W +++ + G +
Sbjct: 262 R-----DVATWNVMIGVMYAKCGLVEDARKVFDAMPER--NVVCWTSMISGYTQVGKFKQ 314
Query: 276 GERVTRKI 283
++ R +
Sbjct: 315 AVKLFRDM 322
>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Glycine max]
Length = 824
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/314 (35%), Positives = 184/314 (58%), Gaps = 4/314 (1%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E ++V N ++ K G ++ AR++FE++P R+V+SW +I GY + ++ A+ +
Sbjct: 382 EVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNM 441
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M P++ T +++ PA G ++ IHG K + V+ CLID Y KC
Sbjct: 442 MEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCL-FLDVFVATCLIDMYGKC 500
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + A+ LF +I E V W +IIS +HG G++A++ F+ M+ +K + +TF+S
Sbjct: 501 GRLEDAMSLFYEIPQETS--VPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVS 558
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L+ACSH GLV+E FD M +E + P++KHYGC++D+ GRAG LE+A + S +P +
Sbjct: 559 LLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQ 618
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
+ +W TLL AC HGN E+G + ++LE++ G YVL+ NI A V ++ A ++
Sbjct: 619 -ADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKV 677
Query: 314 RRVVDERNALKFPG 327
R + +R K PG
Sbjct: 678 RSLARDRGLRKTPG 691
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 159/297 (53%), Gaps = 11/297 (3%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E ++ N +I K+G L+ A+ +F+ M R++VSW II Y + + AL F+
Sbjct: 280 ESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKE 339
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M+ P +T++++ Q D R + +HG+ + + I + N L++ YAK
Sbjct: 340 MLFVG-MRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKL 398
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK-VVLKPNRVTFL 192
G I A +FE + ++++SW ++I+G+A +G+ EA++ + M++ + PN+ T++
Sbjct: 399 GSIDCARAVFEQLP--SRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWV 456
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
S+L A SH G +++G+K ++++ C L D+ CLIDM G+ GRLE A + IP
Sbjct: 457 SILPAYSHVGALQQGMKIHGRLIKNCLFL-DVFVATCLIDMYGKCGRLEDAMSLFYEIPQ 515
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEME-RGYGGDYVLMYNILAGVWRYG 308
E + V W ++ + HG+ GE+ + +M G D++ ++L+ G
Sbjct: 516 ETS--VPWNAIISSLGIHGH---GEKALQLFKDMRADGVKADHITFVSLLSACSHSG 567
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 124/252 (49%), Gaps = 9/252 (3%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
+++V ++T G+L + + F+ + +N+ SW ++ Y R R ++ +
Sbjct: 81 QDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRYRDSMDCVTEL 140
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
++ P T V A D + +H + K GF ++V+ LI Y++ G
Sbjct: 141 LSLSGVRPDFYTFPPVLKACLSLAD---GEKMHCWVLKMGFE-HDVYVAASLIHLYSRFG 196
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
+ A K+F D+ V +++ SW ++ISGF +G EA+ +RM+ +K + VT S+
Sbjct: 197 AVEVAHKVFVDMPV--RDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSM 254
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L C+ V G+ +++ + D+ LI+M + GRL+ A++V G+ E+
Sbjct: 255 LPICAQSNDVVGGVLVHLYVIKH-GLESDVFVSNALINMYSKFGRLQDAQRVFDGM--EV 311
Query: 255 TNVVVWRTLLGA 266
++V W +++ A
Sbjct: 312 RDLVSWNSIIAA 323
>gi|125539857|gb|EAY86252.1| hypothetical protein OsI_07623 [Oryza sativa Indica Group]
Length = 629
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 115/318 (36%), Positives = 190/318 (59%), Gaps = 7/318 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
++V+WN M++G K G+L AR +F MP RN+VSW+ ++D R AL +F RM+
Sbjct: 144 DVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMM 203
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF--HIHVSNCLIDTYAKC 133
E+ P + +++V A G V + +H Y E F ++ + L+D Y KC
Sbjct: 204 REEF-RPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKC 262
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
GC+ A ++F+ V R+++V W ++I G AM+G G+ A+E F RM + PN TF++
Sbjct: 263 GCMEDAWQVFD--GVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIA 320
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VL AC+H G V+EG + F M ++ + P +HYGCL D+LGRAG +E+AE + +P E
Sbjct: 321 VLCACTHTGRVDEGKRVFKSM-QDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPME 379
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
+ W L+ +C H ++ +GERV ++++E+E GG YV+++N+ A R+ +A +
Sbjct: 380 -PHASQWGALMSSCQMHNDINVGERVGKRLIELEPYDGGRYVVLFNLYAVNGRWEEARTI 438
Query: 314 RRVVDERNALKFPGRSLV 331
R+++++R A K G S +
Sbjct: 439 RQMMEDRGAKKETGLSFI 456
>gi|115468780|ref|NP_001057989.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|50725579|dbj|BAD33047.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113596029|dbj|BAF19903.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|125597760|gb|EAZ37540.1| hypothetical protein OsJ_21869 [Oryza sativa Japonica Group]
Length = 530
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 191/330 (57%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L++ KLF+++P RN+++W ++++G G+L+ AR LF + ++++ WT +I+ +
Sbjct: 200 LEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQH 259
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL LFR M + EP T++ + G + + IH Y E+R +
Sbjct: 260 GCFEEALTLFRDM-QMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAV- 317
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LID Y+KCG I +L++F ++ ++ +WT+II G A +G A+E F+ MQ+
Sbjct: 318 LGTALIDMYSKCGHIEKSLEVF--WRMQGRDATAWTAIICGLATNGQAGRALELFQDMQR 375
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KP+ VTF+ VL+AC HGGLV+EG K F M E ++ P ++HY CL+++LGRAG L+
Sbjct: 376 SKVKPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLLGRAGLLD 435
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AE++ +P + ++ LL AC HGNVEM ER+T++I E + +LM N+
Sbjct: 436 EAERLIGDVPINKDAMPLFGALLTACKAHGNVEMSERLTKRICEQDSQITDVNLLMSNVY 495
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ D R+R + K G SL+
Sbjct: 496 ATASRWEDVIRVRGKMAHPTVKKNAGCSLI 525
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 121/247 (48%), Gaps = 37/247 (14%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G ++ AR +F+EMP R +V W ++ Y R + A+AL +M T P +T++
Sbjct: 98 GRVDIARKVFDEMPSRALVLWNMMVRCYIRCGWYSAAVALSEQMERSGVT-PDRVTLVTA 156
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A + D+ + IH Y + F++ V+N L+D Y K C+ A+KLFE +
Sbjct: 157 VTACSRARDLSLGRRIHVYMDN--VFGFNLPVANALLDMYTKNDCLEEAVKLFEQMPA-- 212
Query: 151 KNLVSWTSIISGFAM-------------------------------HGMGKEAVENFERM 179
+N++SWT ++SG+ + HG +EA+ F M
Sbjct: 213 RNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDM 272
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
Q ++P+R T +++L C++ G +++G ++ + E+ ++ D LIDM + G
Sbjct: 273 QMQRVEPDRFTVVTLLTCCANLGALDQG-EWIHQYAEQRKMKIDAVLGTALIDMYSKCGH 331
Query: 240 LEQAEKV 246
+E++ +V
Sbjct: 332 IEKSLEV 338
>gi|357118977|ref|XP_003561223.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 604
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/358 (34%), Positives = 201/358 (56%), Gaps = 36/358 (10%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWG-ELEYARSLFEEMPCRNVVSWTGIIDGYTR----- 60
+LFDE+PER++VTWN M+ G + G ++ AR++F+ MP R+VVSW ++DGY +
Sbjct: 206 RLFDEMPERDVVTWNTMLAGYARGGADMASARAVFDAMPERDVVSWNSMLDGYAQAGDVV 265
Query: 61 --------MNRSNGA------------------LALFRRMVACEYTEPSEITILAVFPAI 94
M R + A L LF M+A + P+E T ++V A
Sbjct: 266 MAWAMFDGMPRRSAASWNVVLALYARRKDWRECLRLFDAMMAVGVSVPNEKTFVSVLTAC 325
Query: 95 WQNGDVRNCQLIHGYGEKRGFNAF-HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 153
GD+ + +HG +R + + L+ YAKCG + +A ++F+ +S +++
Sbjct: 326 GSLGDLERGKWVHGLVRERWDRLVPDVLLLTALLTMYAKCGAMETAREIFDSMS--ERSV 383
Query: 154 VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDK 213
SW S+I G+ +HG ++A+E F M+K +PN TF+ VL++C+HGGLV EG FD+
Sbjct: 384 PSWNSMIIGYGLHGQSEKALELFLEMEKSGPRPNETTFICVLSSCAHGGLVLEGWWCFDR 443
Query: 214 MVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
MV P +H+GC++D+LGRAG L+ +E + + + + +W ++ A N
Sbjct: 444 MVRFYGFEPKAEHFGCMMDLLGRAGLLKDSENLIQNLQGK-ASPALWGIMMSASQTQNNY 502
Query: 274 EMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
++GE V +K++EM+ G Y+L+ NI A R+GD E++R V+ E A K+ G SL+
Sbjct: 503 KLGEFVGKKLIEMKPAEFGPYLLLSNIYASEGRWGDVEKVREVMKENGAEKYVGLSLI 560
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 136/286 (47%), Gaps = 22/286 (7%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+L ++P + VTWN ++ ++ G L AR LF++MP R++VS+ ++ Y + G
Sbjct: 144 RLIADIPRPDTVTWNTLLRACLRSGLLPSARRLFDQMPHRDLVSYNSMLSSYAAVGDMAG 203
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNG-DVRNCQLIHGYGEKRGFNAFHIHVSNC 125
A LF M E +T + + G D+ + + + +R ++ N
Sbjct: 204 AGRLFDEM-----PERDVVTWNTMLAGYARGGADMASARAVFDAMPERDVVSW-----NS 253
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV-VL 184
++D YA+ G + A +F+ + R++ SW +++ +A +E + F+ M V V
Sbjct: 254 MLDGYAQAGDVVMAWAMFDGM--PRRSAASWNVVLALYARRKDWRECLRLFDAMMAVGVS 311
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE--CEVLPDIKHYGCLIDMLGRAGRLEQ 242
PN TF+SVL AC G +E G K+ +V E ++PD+ L+ M + G +E
Sbjct: 312 VPNEKTFVSVLTACGSLGDLERG-KWVHGLVRERWDRLVPDVLLLTALLTMYAKCGAMET 370
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
A ++ + +V W +++ HG E+ LEME+
Sbjct: 371 AREIFDSMSER--SVPSWNSMIIGYGLHGQ---SEKALELFLEMEK 411
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 18/151 (11%)
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLI 231
A + R+ + +P+ VT+ ++L AC GL+ + FD+M D+ Y ++
Sbjct: 138 AASSARRLIADIPRPDTVTWNTLLRACLRSGLLPSARRLFDQMPHR-----DLVSYNSML 192
Query: 232 DMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN---------VEMGERVTRK 282
G + A ++ +P +VV W T+L + G M ER
Sbjct: 193 SSYAAVGDMAGAGRLFDEMPER--DVVTWNTMLAGYARGGADMASARAVFDAMPERDVVS 250
Query: 283 ILEMERGY--GGDYVLMYNILAGVWRYGDAE 311
M GY GD V+ + + G+ R A
Sbjct: 251 WNSMLDGYAQAGDVVMAWAMFDGMPRRSAAS 281
>gi|326520249|dbj|BAK07383.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 637
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 111/323 (34%), Positives = 188/323 (58%), Gaps = 8/323 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D LF+++ ++ V+W MI G + L+ A +F MP ++ ++WT +I G+ +
Sbjct: 223 MEDARTLFNQMSIQDTVSWTSMIAGYCRAKRLDEAIRVFHMMPEQDTIAWTALISGHEQN 282
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR--GFNAFH 119
+ AL LF++M+ E P+ +++ A + G V + +HG+ +R G + F+
Sbjct: 283 GEEDAALDLFQQML-VEGMAPTPFALVSSLGACAKLGLVTRGREVHGFILRRRIGLDPFN 341
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
I + N LID Y+KCG + +A+ +F +S ++ +SW S+++GF+ +G GK+++ F+RM
Sbjct: 342 IFIHNALIDMYSKCGDMATAMLVFARMS--ERDFISWNSMVTGFSHNGQGKQSLAMFKRM 399
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
++P VTFL+VL ACSH GLV +G + + M + V P +HY ID LGR +
Sbjct: 400 LDAEVQPTYVTFLAVLTACSHAGLVTDGRRILESM-QYHGVEPRAEHYASFIDALGRNHQ 458
Query: 240 LEQAEKVASGIPSEITNVVV--WRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297
LE+A + G+ S I W LLGAC HGN E+ E+V + ++E G G YV++
Sbjct: 459 LEEASEFIKGLSSRIGPGTTGSWGALLGACRVHGNTEIAEKVAESLFQLEPGNSGRYVML 518
Query: 298 YNILAGVWRYGDAERLRRVVDER 320
NI A ++ DA R+R ++ E+
Sbjct: 519 SNIYAAAGQWDDARRIRAIMKEK 541
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 9/151 (5%)
Query: 121 HVSNCLIDTYAK-CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
H N L+ ++ + AL L + + +N+VS+ +IIS A +G EA+ F R+
Sbjct: 99 HSYNNLLAALSRGSATLPDALHLLDAMPASSRNVVSYNTIISALARNGRQGEALRVFARL 158
Query: 180 QK-VVLKP----NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDML 234
+ L P +R +SV +AC+ G + + +V + I ++D
Sbjct: 159 ARDRCLGPEVALDRFAVVSVASACAGMGALRPLREMHGAVVVSGVEVTVIM-ANAMVDAY 217
Query: 235 GRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
+AGR+E A + + + I + V W +++
Sbjct: 218 SKAGRMEDARTLFNQM--SIQDTVSWTSMIA 246
>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/313 (37%), Positives = 181/313 (57%), Gaps = 26/313 (8%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + +LFDE+PER+ V+WN ++ G VK GE+ A LFE+MP RNVVSW+ + G +
Sbjct: 166 LGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMEAG---L 222
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+G T++++ A +G + + +H E+ F
Sbjct: 223 KFDDG-------------------TVISILSACAVSGLLGLGKRVHASIERTRFKC-STP 262
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VSN LID YAKCG + +AL +F + RK++VSW +II G AMHG G++A++ F RM+
Sbjct: 263 VSNALIDMYAKCGSLENALSIFHGMV--RKDVVSWNAIIQGLAMHGHGEKALQLFSRMKG 320
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
P++VTF+ VL AC+H G V+EGL +F M + V P+++HYGC++D+LGR GRL+
Sbjct: 321 EGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLK 380
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++ +P E N ++W TLLGAC H + E V ++++ E G+ ++ NI
Sbjct: 381 EAFRLVHSMPLE-PNAIIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNLSMLSNIY 439
Query: 302 AGVWRYGDAERLR 314
A + + +R
Sbjct: 440 AAAGDWDNFANIR 452
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 133/293 (45%), Gaps = 31/293 (10%)
Query: 32 ELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM-----VACEYTEPSEIT 86
++ A ++F ++ +V+ + +I + R + A ++F M A +T P
Sbjct: 64 QMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYP--FL 121
Query: 87 ILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI 146
+ A +W VR ++IH EK GF I V N LID+Y K G + A +LF+++
Sbjct: 122 LKACSGKVW----VRVVEMIHAQVEKMGF-CLDIFVPNSLIDSYFKLGELGEARRLFDEM 176
Query: 147 SVERKNLVSWTSIISGFAMHGMGKEAVENFERM--QKVV--------LKPNRVTFLSVLN 196
++ VSW +I+ G+ G A E FE+M + VV LK + T +S+L+
Sbjct: 177 P--ERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMEAGLKFDDGTVISILS 234
Query: 197 ACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256
AC+ GL+ G K +E LIDM + G LE A + G+ + +
Sbjct: 235 ACAVSGLLGLG-KRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRK--D 291
Query: 257 VVVWRTLLGACSFHGNVEMGERVTRKILEME-RGYGGDYVLMYNILAGVWRYG 308
VV W ++ + HG+ GE+ + M+ G+ D V +L G
Sbjct: 292 VVSWNAIIQGLAMHGH---GEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAG 341
>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
Length = 954
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 187/332 (56%), Gaps = 13/332 (3%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLF------EEMPC--RNVVSWTGIIDGYT 59
LF E+ +N+V+WN +I+ G + A ++F +E P NVVSW+ +I G+
Sbjct: 328 LFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFA 387
Query: 60 RMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
+ AL LFRRM + + + +TI +V + + + IHG+ R +
Sbjct: 388 SKGQGEEALELFRRMQLAK-VKANSVTIASVLSVCAELAALHLGREIHGH-VVRSLMDGN 445
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
I V N LI+ Y K G +FE I E K+L+SW ++++G+ +HG+G+ A+ F++M
Sbjct: 446 ILVGNGLINMYTKSGSFKEGNLVFEKI--ENKDLISWNTMVAGYGIHGLGENAIRTFDQM 503
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
K +P+ VTF++VL+ACSH GLV EG + FDKM++E V P ++HY C++D+LGRAG
Sbjct: 504 IKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGL 563
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
L++A KV +P E N VW LL +C H N E+ E +I + G Y+L+ N
Sbjct: 564 LQEASKVVKSMPVE-PNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSN 622
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
I A R+ D+ ++R + K PG+S +
Sbjct: 623 IYAASGRWEDSAKVRISAKTKGLKKTPGQSWI 654
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 94/363 (25%), Positives = 157/363 (43%), Gaps = 56/363 (15%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR----NVVSWTGIIDG 57
+ D K+F+ + R+ V+WN M++G + A +F M N+V+WT ++
Sbjct: 186 MDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSS 245
Query: 58 YTRMNRSNGALALFRRM----VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR 113
+ R + + LF RM + + + ++V A + G V IHGY K
Sbjct: 246 HARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKV-----IHGYVVKG 300
Query: 114 GFNAF-------------HIHVS-----------------NCLIDTYAKCG------CIF 137
GF + H +V+ N LI +YA G IF
Sbjct: 301 GFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIF 360
Query: 138 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197
L+ ++ + R N+VSW+++I GFA G G+EA+E F RMQ +K N VT SVL+
Sbjct: 361 LQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSV 420
Query: 198 CSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNV 257
C+ + G + +V + +I LI+M ++G ++ V I E ++
Sbjct: 421 CAELAALHLGREIHGHVVRSL-MDGNILVGNGLINMYTKSGSFKEGNLVFEKI--ENKDL 477
Query: 258 VVWRTLLGACSFHGNVEMGERVTRKILEM-ERGYGGDYVLMYNILAGVWRYGDAERLRRV 316
+ W T++ HG +GE R +M + G+ D V +L+ G R +
Sbjct: 478 ISWNTMVAGYGIHG---LGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGREL 534
Query: 317 VDE 319
D+
Sbjct: 535 FDK 537
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 94/188 (50%), Gaps = 7/188 (3%)
Query: 30 WGELEYARSLFEEMPCR---NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEIT 86
+G + A+ +FE P N++ W I+ AL ++ RM + T
Sbjct: 79 FGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADG-FT 137
Query: 87 ILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI 146
V A G + C+ +HG+ + GF +++HV N L+ Y K G + A K+FE +
Sbjct: 138 FPLVIRACALMGSRKLCRSVHGHVVEMGFQ-WNLHVGNELMGMYGKIGRMDDARKVFERM 196
Query: 147 SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEE 206
+V ++ VSW +++SG+A++ A E F M L+PN VT+ S+L++ + G E
Sbjct: 197 AV--RSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVE 254
Query: 207 GLKFFDKM 214
++ F +M
Sbjct: 255 TMELFGRM 262
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 33/165 (20%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
K+G+ +F+++ ++L++WN M+ G G E A F++M I DG+
Sbjct: 462 FKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQM----------IKDGF--- 508
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
EP +T +AV A G V + + K +
Sbjct: 509 -------------------EPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQME 549
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 166
C++D + G + A K+ + + VE N W ++++ MH
Sbjct: 550 HYACMVDLLGRAGLLQEASKVVKSMPVE-PNACVWGALLNSCRMH 593
>gi|10086462|gb|AAG12522.1|AC015446_3 Hypothetical Protein [Arabidopsis thaliana]
Length = 539
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 123/331 (37%), Positives = 197/331 (59%), Gaps = 17/331 (5%)
Query: 7 KLFDELPERNLVTWNVMITGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
+L ++ R L +++ T L+ K G+L A LF+EMP R+V SW +I G N
Sbjct: 130 QLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLFDEMPVRDVASWNALIAGLVSGN 189
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQ-LIHGYGEKRGFNAFHIH 121
R++ A+ L++RM E SE+T++A A GDV+ + + HGY ++
Sbjct: 190 RASEAMELYKRM-ETEGIRRSEVTVVAALGACSHLGDVKEGENIFHGYSND------NVI 242
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VSN ID Y+KCG + A ++FE + +K++V+W ++I+GFA+HG A+E F++++
Sbjct: 243 VSNAAIDMYSKCGFVDKAYQVFEQFT-GKKSVVTWNTMITGFAVHGEAHRALEIFDKLED 301
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECE-VLPDIKHYGCLIDMLGRAGRL 240
+KP+ V++L+ L AC H GLVE GL F+ M C+ V ++KHYGC++D+L RAGRL
Sbjct: 302 NGIKPDDVSYLAALTACRHAGLVEYGLSVFNNMA--CKGVERNMKHYGCVVDLLSRAGRL 359
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
+A + + S I + V+W++LLGA + +VEM E +R+I EM GD+VL+ N+
Sbjct: 360 REAHDIICSM-SMIPDPVLWQSLLGASEIYSDVEMAEIASREIKEMGVNNDGDFVLLSNV 418
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ D R+R ++ + K PG S +
Sbjct: 419 YAAQGRWKDVGRVRDDMESKQVKKIPGLSYI 449
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 127/268 (47%), Gaps = 24/268 (8%)
Query: 26 GLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPS-- 83
+ +G+L +A +F +P W II G+ + + A + +R M+ + +
Sbjct: 46 AISPFGDLSFAVQIFRYIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAIC 105
Query: 84 -------EITILAVFPAIWQNG-DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
T+ A A+ + D +CQ+ +RG +A + + L+D Y+K G
Sbjct: 106 RVDALTCSFTLKACARALCSSAMDQLHCQI-----NRRGLSADSL-LCTTLLDAYSKNGD 159
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ SA KLF+++ V +++ SW ++I+G EA+E ++RM+ ++ + VT ++ L
Sbjct: 160 LISAYKLFDEMPV--RDVASWNALIAGLVSGNRASEAMELYKRMETEGIRRSEVTVVAAL 217
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
ACSH G V+EG F + ++ + IDM + G +++A +V +
Sbjct: 218 GACSHLGDVKEGENIFHGYSNDNVIVSN-----AAIDMYSKCGFVDKAYQVFEQFTGK-K 271
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKI 283
+VV W T++ + HG + K+
Sbjct: 272 SVVTWNTMITGFAVHGEAHRALEIFDKL 299
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC-RNVVSWTGIIDGYTR 60
+K+G +F N++ N I K G ++ A +FE+ ++VV+W +I G+
Sbjct: 226 VKEGENIFHGYSNDNVIVSNAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGFAV 285
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNG 98
++ AL +F ++ +P +++ LA A G
Sbjct: 286 HGEAHRALEIFDKLED-NGIKPDDVSYLAALTACRHAG 322
>gi|77554579|gb|ABA97375.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 794
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 179/314 (57%), Gaps = 12/314 (3%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVAC--- 77
++ K G+L AR +F+EM R+V +W ++ G + N ALALF R+
Sbjct: 150 TTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQE 209
Query: 78 --EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
EP+E+TI+A A Q G +++ +H + ++ G + ++ V N LID Y+KCG
Sbjct: 210 LPSREEPNEVTIVAALSACAQIGLLKDGMYVHEFAKRFGLDR-NVRVCNSLIDMYSKCGS 268
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ AL +F I E + LVS+ + I +MHG G +A+ F+ M + +P+ VT+L+VL
Sbjct: 269 LSRALDVFHSIKPEDQTLVSYNAAIQAHSMHGHGGDALRLFDEMPTRI-EPDGVTYLAVL 327
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
C+H GLV++GL+ F+ M V P++KHYG ++D+LGRAGRL +A +P
Sbjct: 328 CGCNHSGLVDDGLRVFNSM----RVAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFP-A 382
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
++V+W+TLLGA HG VE+ E K+ E+ GDYVL+ N+ A R+ D R+R
Sbjct: 383 DIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRD 442
Query: 316 VVDERNALKFPGRS 329
+ + K PG S
Sbjct: 443 TMRSNDVRKVPGFS 456
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 13/233 (5%)
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
P +++ A + D +H + G A + + L+D+YAKCG + SA K
Sbjct: 109 PDALSLSFALKASARCSDAHTTVQLHALVLRLGVAA-DVRLLTTLLDSYAKCGDLASARK 167
Query: 142 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL------KPNRVTFLSVL 195
+F++++V +++ +W S+++G A A+ F R+ +PN VT ++ L
Sbjct: 168 VFDEMTV--RDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAAL 225
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+AC+ GL+++G+ + + + + +++ LIDM + G L +A V I E
Sbjct: 226 SACAQIGLLKDGM-YVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQ 284
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
+V + + A S HG+ G R EM D V +L G G
Sbjct: 285 TLVSYNAAIQAHSMHGH---GGDALRLFDEMPTRIEPDGVTYLAVLCGCNHSG 334
>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
Length = 606
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 185/310 (59%), Gaps = 6/310 (1%)
Query: 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTE 81
+I + G+ AR +F VVS+ +I R +R AL LFR M + +
Sbjct: 173 TLINMYAECGDARAARVMFGGTDGGCVVSYNAMIAAAVRSSRPGEALVLFREMQG-KGLK 231
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
P+ +T+++V A G + + +H Y K G + + VS LID YAKCG + A+
Sbjct: 232 PTSVTVISVLSACALLGALELGRWVHDYVRKIGLGSL-VKVSTALIDMYAKCGSLEDAID 290
Query: 142 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHG 201
+F+ +E K+ +W+ +I +A HG G+EA+ FE M+K +KP+ +TFL VL ACSH
Sbjct: 291 VFQ--GMESKDRQAWSVMIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHS 348
Query: 202 GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWR 261
GLV EGL++FD M ++ ++P IKHYGC+ D+L R+G+LE+A K +P T ++WR
Sbjct: 349 GLVSEGLQYFDDM-KDHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTP-ILWR 406
Query: 262 TLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321
TLL AC HG+ E+G+RV +IL+++ +GGDYV+ N+ A + + +R+++ E+
Sbjct: 407 TLLSACGGHGDFELGKRVFERILKLDDSHGGDYVIFSNLCANTGYWEEMNMVRKLMSEKG 466
Query: 322 ALKFPGRSLV 331
+K PG S +
Sbjct: 467 VVKVPGCSSI 476
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 114/247 (46%), Gaps = 13/247 (5%)
Query: 31 GELEYARSLFEEMP-CRNVVSWTGIIDGYTRMNRSN-----GALALFRRMVACEYTEPSE 84
L YAR +F+ +P + V + ++ GY R + + A+ +F RM+ E P
Sbjct: 75 AHLAYARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLE-EGVAPDT 133
Query: 85 ITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFE 144
T +++ A + H K G A H +V LI+ YA+CG +A +F
Sbjct: 134 YTFVSLLKACAAARAGEEGRQAHALAVKLG-AADHDYVRPTLINMYAECGDARAARVMFG 192
Query: 145 DISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLV 204
+ +VS+ ++I+ EA+ F MQ LKP VT +SVL+AC+ G +
Sbjct: 193 --GTDGGCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLGAL 250
Query: 205 EEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
E G ++ V + + +K LIDM + G LE A V G+ S+ + W ++
Sbjct: 251 ELG-RWVHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESK--DRQAWSVMI 307
Query: 265 GACSFHG 271
A + HG
Sbjct: 308 VAYANHG 314
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 185/297 (62%), Gaps = 6/297 (2%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW 95
A LF+ +P ++VVSW ++ GY + + ++ +FR M++ + +P + ++ + A
Sbjct: 361 AVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLS-DGIQPDAVAVVKILAASS 419
Query: 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 155
+ G + +HGY + GFN+ ++ V LI+ Y+KCG + A+KLF+ + V +++V
Sbjct: 420 ELGIFQQALCLHGYVVRSGFNS-NVFVGASLIELYSKCGSLGDAVKLFKGMIV--RDVVI 476
Query: 156 WTSIISGFAMHGMGKEAVENFERMQK-VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKM 214
W+S+I+ + +HG G EA+E F++M K ++PN VTFLS+L+ACSH GLVEEGLK FD+M
Sbjct: 477 WSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRM 536
Query: 215 VEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
V + ++ PD +H+G ++D+LGR G+L +A + + +P VW LLGAC H N+E
Sbjct: 537 VHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIP-AGPHVWGALLGACRIHHNIE 595
Query: 275 MGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
MGE + + ++ + G Y+L+ NI A ++ + LR + ER K G+S+V
Sbjct: 596 MGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMV 652
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 186/309 (60%), Gaps = 5/309 (1%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
++ K G++E AR +F++M R++VSWT +I GY ++ L F M + P
Sbjct: 859 LVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVI-P 917
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
+ ++IL+V A G +R + H Y + GF F I V+ ++D Y+KCG + A L
Sbjct: 918 NRVSILSVLLACGNLGALRKGEWFHSYVIQTGFE-FDILVATAIMDMYSKCGSLDLARCL 976
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202
F++ + K+LV W+++I+ + +HG G++A++ F++M K ++P+ VTF VL+ACSH G
Sbjct: 977 FDETA--GKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSG 1034
Query: 203 LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
L+EEG +F M EE + + +Y C++D+LGRAG+L +A + +P E + +W +
Sbjct: 1035 LLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVE-PDASIWGS 1093
Query: 263 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNA 322
LLGAC H N+++ E++ + ++ + G +VL+ NI A R+ + E++R+++ R A
Sbjct: 1094 LLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGA 1153
Query: 323 LKFPGRSLV 331
K G SLV
Sbjct: 1154 NKIQGFSLV 1162
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 132/256 (51%), Gaps = 7/256 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
+L N ++ K G + A +LF +MP ++V+SW+ +I Y +N AL LF M+
Sbjct: 240 DLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMI 299
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
+ EP+ +T+++ A + ++ + IH +GF VS LID Y KC C
Sbjct: 300 EKRF-EPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFE-LDFSVSTALIDMYMKCSC 357
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
A+ LF+ + +K++VSW +++SG+A +GM +++ F M ++P+ V + +L
Sbjct: 358 PDEAVDLFQRLP--KKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKIL 415
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
A S G+ ++ L +V ++ LI++ + G L A K+ G+ +
Sbjct: 416 AASSELGIFQQALCLHGYVVRS-GFNSNVFVGASLIELYSKCGSLGDAVKLFKGMI--VR 472
Query: 256 NVVVWRTLLGACSFHG 271
+VV+W +++ A HG
Sbjct: 473 DVVIWSSMIAAYGIHG 488
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 134/280 (47%), Gaps = 8/280 (2%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
K G++ A +FEE + V WT ++ GY + N ALALF +MV + +T++
Sbjct: 151 KCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLV 210
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
+V A Q +V+ +HG +R F+ + + N L++ YAK GC A LF +
Sbjct: 211 SVVSACAQLLNVKAGSCVHGLVIRREFDG-DLPLVNSLLNLYAKTGCEKIAANLFSKMP- 268
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
K+++SW+++I+ +A + EA+ F M + +PN VT +S L AC+ +EEG
Sbjct: 269 -EKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGK 327
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
K V + L D LIDM + ++A + +P + +VV W LL +
Sbjct: 328 KIHKIAVWKGFEL-DFSVSTALIDMYMKCSCPDEAVDLFQRLPKK--DVVSWVALLSGYA 384
Query: 269 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
+G V R +L G D V + ILA G
Sbjct: 385 QNGMAYKSMGVFRNML--SDGIQPDAVAVVKILAASSELG 422
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 125/245 (51%), Gaps = 7/245 (2%)
Query: 28 VKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITI 87
V + ++ A +FE++P W +I G+ R +L L+ +M+ + +P +
Sbjct: 763 VSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMME-KGLKPDKFAF 821
Query: 88 LAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS 147
+ D++ ++IH + G + + V L+D YAKCG I +A +F+ ++
Sbjct: 822 PFALKSCAGLSDLQRGKVIHQHLVCCGCSN-DLFVDAALVDMYAKCGDIEAARLVFDKMA 880
Query: 148 VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEG 207
V ++LVSWTS+ISG+A +G E + F+ M+ + PNRV+ LSVL AC + G + +G
Sbjct: 881 V--RDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKG 938
Query: 208 LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC 267
++F V + DI ++DM + G L+ A + + ++V W ++ +
Sbjct: 939 -EWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGK--DLVCWSAMIASY 995
Query: 268 SFHGN 272
HG+
Sbjct: 996 GIHGH 1000
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 118/242 (48%), Gaps = 11/242 (4%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
K L+ AR +F+E P NV W + Y R + L LF M+ P TI
Sbjct: 48 KCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIP 107
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
A + ++IHG+ +K + V + L++ Y+KCG + ALK+FE+
Sbjct: 108 IALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEF-- 165
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFER---MQKVVLKPNRVTFLSVLNACSHGGLVE 205
+R + V WTS+++G+ + +EA+ F + M VVL P VT +SV++AC+ V+
Sbjct: 166 QRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDP--VTLVSVVSACAQLLNVK 223
Query: 206 EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
G +V E D+ L+++ + G + A + S +P + +V+ W T++
Sbjct: 224 AG-SCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEK--DVISWSTMI- 279
Query: 266 AC 267
AC
Sbjct: 280 AC 281
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 14/156 (8%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
K G L A LF+ M R+VV W+ +I Y R AL +F +MV P+ +T L
Sbjct: 455 KCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFL 514
Query: 89 AVFPAIWQNGDVRNC-----QLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLF 143
++ A G V +++H Y + F I ++D + G + A+ +
Sbjct: 515 SILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGI-----MVDLLGRIGQLGKAMDII 569
Query: 144 EDISVERKNLVSWTSIISGFAMHG---MGKEAVENF 176
+ + V W +++ +H MG+ A +N
Sbjct: 570 NRMPIPAGPHV-WGALLGACRIHHNIEMGEAAAKNL 604
>gi|15229345|ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04750, mitochondrial; Flags: Precursor
gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein [Arabidopsis thaliana]
gi|332640610|gb|AEE74131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 661
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 194/330 (58%), Gaps = 8/330 (2%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
+ FD + ++++ +WN M+ G V+ G++E A+++F++MP R++VSW ++ GY++
Sbjct: 288 AKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCD 347
Query: 65 NGAL-ALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF--NAFHIH 121
+ LF M E +P +T++++ NG++ + + +HG + +AF
Sbjct: 348 QRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAF--- 404
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+S+ LID Y KCG I A +F+ + K++ WTS+I+G A HG G++A++ F RMQ+
Sbjct: 405 LSSALIDMYCKCGIIERAFMVFK--TATEKDVALWTSMITGLAFHGNGQQALQLFGRMQE 462
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ PN VT L+VL ACSH GLVEEGL F+ M ++ P+ +HYG L+D+L RAGR+E
Sbjct: 463 EGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRVE 522
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A+ + + +W ++L AC ++E E ++L++E G YVL+ NI
Sbjct: 523 EAKDIVQKKMPMRPSQSMWGSILSACRGGEDIETAELALTELLKLEPEKEGGYVLLSNIY 582
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A V R+G +++ R ++ R K G S V
Sbjct: 583 ATVGRWGYSDKTREAMENRGVKKTAGYSSV 612
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 153/326 (46%), Gaps = 42/326 (12%)
Query: 20 WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEY 79
WN ++ ++ G A +F MP +V S+ +I GY + S AL L+ +MV+ +
Sbjct: 169 WNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVS-DG 227
Query: 80 TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG-FNAFHIHVSNCLIDTYAKC----- 133
EP E T+L++ D+R + +HG+ E+RG + ++ +SN L+D Y KC
Sbjct: 228 IEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGL 287
Query: 134 --------------------------GCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 167
G + +A +F+ + +++LVSW S++ G++ G
Sbjct: 288 AKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMP--KRDLVSWNSLLFGYSKKG 345
Query: 168 MGKEAV-ENFERMQKV-VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIK 225
+ V E F M V +KP+RVT +S+++ ++ G + G ++ +V ++ D
Sbjct: 346 CDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHG-RWVHGLVIRLQLKGDAF 404
Query: 226 HYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
LIDM + G +E+A V + +V +W +++ +FHGN + ++ ++
Sbjct: 405 LSSALIDMYCKCGIIERAFMVFKTATEK--DVALWTSMITGLAFHGNGQQALQLFGRM-- 460
Query: 286 MERGYGGDYVLMYNILAGVWRYGDAE 311
E G + V + +L G E
Sbjct: 461 QEEGVTPNNVTLLAVLTACSHSGLVE 486
>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 586
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 115/318 (36%), Positives = 190/318 (59%), Gaps = 7/318 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
++V+WN M++G K G+L AR +F MP RN+VSW+ ++D R AL +F RM+
Sbjct: 144 DVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMM 203
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF--HIHVSNCLIDTYAKC 133
E+ P + +++V A G V + +H Y E F ++ + L+D Y KC
Sbjct: 204 REEF-RPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKC 262
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
GC+ A ++F+ V R+++V W ++I G AM+G G+ A+E F RM + PN TF++
Sbjct: 263 GCMEDAWQVFD--GVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIA 320
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VL AC+H G V+EG + F M ++ + P +HYGCL D+LGRAG +E+AE + +P E
Sbjct: 321 VLCACTHTGRVDEGKRVFKSM-QDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPME 379
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
+ W L+ +C H ++ +GERV ++++E+E GG YV+++N+ A R+ +A +
Sbjct: 380 -PHASQWGALMSSCQMHNDINVGERVGKRLIELEPYDGGRYVVLFNLYAVNGRWEEARTI 438
Query: 314 RRVVDERNALKFPGRSLV 331
R+++++R A K G S +
Sbjct: 439 RQMMEDRGAKKETGLSFI 456
>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 705
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 182/299 (60%), Gaps = 5/299 (1%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
K E+E AR LF++MP R++V+WT +I GY +N +L LF +M E P ++ ++
Sbjct: 279 KCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMRE-EGVVPDKVAMV 337
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
V A + G + + I Y +++ F + + +ID +AKCGC+ SA ++F+ +
Sbjct: 338 TVVFACAKLGAMHKARTIDDYIQRKKFQ-LDVILGTAMIDMHAKCGCVESAREIFD--RM 394
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
E KN++SW+++I+ + HG G++A++ F M + + PN++T +S+L ACSH GLVEEGL
Sbjct: 395 EEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGL 454
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
+FF M E+ V D+KHY C++D+LGRAGRL++A K+ + E + +W LGAC
Sbjct: 455 RFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVE-KDEGLWGAFLGACR 513
Query: 269 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPG 327
H +V + E+ +LE++ G Y+L+ NI A R+ D + R ++ +R K PG
Sbjct: 514 THKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPG 572
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 160/305 (52%), Gaps = 13/305 (4%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
++ VK E+E AR LF++M R++V+WT +I GY ++N +L LF +M E P
Sbjct: 71 LVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMRE-EGVVP 129
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
++ ++ V A + G + ++I Y +++ F + + +ID YAKCGC+ SA ++
Sbjct: 130 DKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQ-LDVILGTAMIDMYAKCGCVESAREI 188
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202
F+ +E KN++SW+++I+ + HG G++A++ F M + P+++T S+L ACS
Sbjct: 189 FD--RMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLK 246
Query: 203 LVEEGLKFFDKMVEECEVLPDIKHYGC--LIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
++ G + +V + + D+ H+ C L+DM G+ +E A + +P ++V W
Sbjct: 247 NLQMG-RLIHHIVYKFGL--DLDHFVCAALVDMYGKCREIEDARFLFDKMPER--DLVTW 301
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320
++G + GN + K+ E G D V M ++ + G + R + D
Sbjct: 302 TVMIGGYAECGNANESLVLFDKM--REEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYI 359
Query: 321 NALKF 325
KF
Sbjct: 360 QRKKF 364
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 140/272 (51%), Gaps = 12/272 (4%)
Query: 6 SKLFDELPER-----NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
+++ D+ +R +++ MI K G +E AR +F+ M +NV+SW+ +I Y
Sbjct: 150 ARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGY 209
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+ AL LFR M++ P +IT+ ++ A +++ +LIH K G + H
Sbjct: 210 HGQGRKALDLFRMMLSSGML-PDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHF 268
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V L+D Y KC I A LF+ + ++LV+WT +I G+A G E++ F++M+
Sbjct: 269 -VCAALVDMYGKCREIEDARFLFDKMP--ERDLVTWTVMIGGYAECGNANESLVLFDKMR 325
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ + P++V ++V+ AC+ G + + + D ++ + D+ +IDM + G +
Sbjct: 326 EEGVVPDKVAMVTVVFACAKLGAMHKA-RTIDDYIQRKKFQLDVILGTAMIDMHAKCGCV 384
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
E A ++ + E NV+ W ++ A +HG
Sbjct: 385 ESAREIFDRM--EEKNVISWSAMIAAYGYHGQ 414
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
+++ MI K G +E AR +F+ M +NV+SW+ +I Y + AL LF M+
Sbjct: 367 DVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMML 426
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRN-CQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
P++IT++++ A G V + E A H + C++D + G
Sbjct: 427 RSGIL-PNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYT-CVVDLLGRAG 484
Query: 135 CIFSALKLFEDISVER 150
+ ALKL E ++VE+
Sbjct: 485 RLDEALKLIESMTVEK 500
>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 187/332 (56%), Gaps = 13/332 (3%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLF------EEMPC--RNVVSWTGIIDGYT 59
LF E+ +N+V+WN +I+ G + A ++F +E P NVVSW+ +I G+
Sbjct: 328 LFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFA 387
Query: 60 RMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
+ AL LFRRM + + + +TI +V + + + IHG+ R +
Sbjct: 388 SKGQGEEALELFRRMQLAK-VKANSVTIASVLSVCAELAALHLGREIHGH-VVRSLMDGN 445
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
I V N LI+ Y K G +FE I E K+L+SW ++++G+ +HG+G+ A+ F++M
Sbjct: 446 ILVGNGLINMYTKSGSFKEGNLVFEKI--ENKDLISWNTMVAGYGIHGLGENAIRTFDQM 503
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
K +P+ VTF++VL+ACSH GLV EG + FDKM++E V P ++HY C++D+LGRAG
Sbjct: 504 IKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGL 563
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
L++A KV +P E N VW LL +C H N E+ E +I + G Y+L+ N
Sbjct: 564 LQEASKVVKSMPVE-PNACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSN 622
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
I A R+ D+ ++R + K PG+S +
Sbjct: 623 IYAASGRWEDSAKVRISAKTKGLKKTPGQSWI 654
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 94/364 (25%), Positives = 155/364 (42%), Gaps = 58/364 (15%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR----NVVSWTGIIDG 57
+ D K+F+ + R+ V+WN M++G + A +F M N+V+WT ++
Sbjct: 186 MDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSS 245
Query: 58 YTRMNRSNGALALFRRM----VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR 113
+ R + + LF RM + + + ++V A + G V IHGY K
Sbjct: 246 HARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKV-----IHGYVVKG 300
Query: 114 GFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE------------------------ 149
GF + + V N LI Y K G + +A LF +I +
Sbjct: 301 GFENY-LFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAI 359
Query: 150 -------------RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLN 196
R N+VSW+++I GFA G G+EA+E F RMQ +K N VT SVL+
Sbjct: 360 FLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLS 419
Query: 197 ACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256
C+ + G + +V + +I LI+M ++G ++ V I E +
Sbjct: 420 VCAELAALHLGREIHGHVVRSL-MDGNILVGNGLINMYTKSGSFKEGNLVFEKI--ENKD 476
Query: 257 VVVWRTLLGACSFHGNVEMGERVTRKILEM-ERGYGGDYVLMYNILAGVWRYGDAERLRR 315
++ W T++ HG +GE R +M + G+ D V +L+ G R
Sbjct: 477 LISWNTMVAGYGIHG---LGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRE 533
Query: 316 VVDE 319
+ D+
Sbjct: 534 LFDK 537
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 94/188 (50%), Gaps = 7/188 (3%)
Query: 30 WGELEYARSLFEEMPCR---NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEIT 86
+G + A+ +FE P N++ W I+ AL ++ RM + T
Sbjct: 79 FGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADG-FT 137
Query: 87 ILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI 146
V A G + C+ +HG+ + GF +++HV N L+ Y K G + A K+FE +
Sbjct: 138 FPLVIRACALMGSRKLCRSVHGHVVEMGFQ-WNLHVGNELMGMYGKIGRMDDARKVFERM 196
Query: 147 SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEE 206
+V ++ VSW +++SG+A++ A E F M L+PN VT+ S+L++ + G E
Sbjct: 197 AV--RSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVE 254
Query: 207 GLKFFDKM 214
++ F +M
Sbjct: 255 TMELFGRM 262
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 33/165 (20%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
K+G+ +F+++ ++L++WN M+ G G E A F++M I DG+
Sbjct: 462 FKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQM----------IKDGF--- 508
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
EP +T +AV A G V + + K +
Sbjct: 509 -------------------EPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQME 549
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 166
C++D + G + A K+ + + VE N W ++++ MH
Sbjct: 550 HYACMVDLLGRAGLLQEASKVVKSMPVE-PNACVWGALLNSCRMH 593
>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
Length = 739
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 122/334 (36%), Positives = 188/334 (56%), Gaps = 11/334 (3%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
+ + +LF+ +P RN+ +WN M+TG + G LE A+++F+ MP ++ VSW ++ Y++
Sbjct: 301 MMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQ 360
Query: 61 MNRSNGALALFRRMVAC-EYTEPSEIT-ILAVFPAIWQNGDVRNCQL-IHGYGEKRGFNA 117
S L LF M C E+ S +L+ I C + +HG + G+
Sbjct: 361 GGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADI----AALECGMQLHGRLIRAGY-G 415
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
V N L+ Y KCG + A FE++ E +++VSW ++I+G+A HG GKEA+E F+
Sbjct: 416 VGCFVGNALLAMYFKCGNMEDARNAFEEM--EERDVVSWNTMIAGYARHGFGKEALEIFD 473
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
M+ KP+ +T + VL ACSH GLVE+G+ +F M + V +HY C+ID+LGRA
Sbjct: 474 MMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRA 533
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297
GRL +A + +P E + +W LLGA H N E+G KI E+E G YVL+
Sbjct: 534 GRLAEAHDLMKDMPFE-PDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLL 592
Query: 298 YNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
NI A ++ DA ++R +++ER K PG S +
Sbjct: 593 SNIYASSGKWRDARKMRVMMEERGVKKVPGFSWI 626
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 135/285 (47%), Gaps = 45/285 (15%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + +LFD +P R++V+WN+M++G + G++ AR LF+ P R+V +WT ++ GY +
Sbjct: 209 MSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQ- 267
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG------- 114
NG L RR VF A+ + V ++ Y ++R
Sbjct: 268 ---NGMLEEARR----------------VFDAMPERNAVSWNAMVAAYIQRRMMDEAKEL 308
Query: 115 FNAF---HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKE 171
FN ++ N ++ YA+ G + A +F+ ++ +K+ VSW ++++ ++ G +E
Sbjct: 309 FNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFD--TMPQKDAVSWAAMLAAYSQGGCSEE 366
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC-- 229
++ F M + NR F VL+ C+ +E G++ +++ + GC
Sbjct: 367 TLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV------GCFV 420
Query: 230 ---LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
L+ M + G +E A + E +VV W T++ + HG
Sbjct: 421 GNALLAMYFKCGNMEDARNAFEEM--EERDVVSWNTMIAGYARHG 463
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 134/273 (49%), Gaps = 23/273 (8%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D LFDE+P R+ VT+NVMI+ G + AR F+ P ++ VSW G++ Y R
Sbjct: 116 LADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRN 175
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R A LF TE I+ A+ Q G + + + R +++I
Sbjct: 176 GRVEEARGLFN-----SRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIM 230
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VS YA+ G + A +LF+ V +++ +WT+++SG+A +GM +EA F+ M +
Sbjct: 231 VSG-----YARRGDMVEARRLFDAAPV--RDVFTWTAVVSGYAQNGMLEEARRVFDAMPE 283
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
N V++ +++ A +++E + F+ M C ++ + ++ +AG LE
Sbjct: 284 R----NAVSWNAMVAAYIQRRMMDEAKELFNMM--PCR---NVASWNTMLTGYAQAGMLE 334
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
+A+ V +P + + V W +L A S G E
Sbjct: 335 EAKAVFDTMPQK--DAVSWAAMLAAYSQGGCSE 365
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 16/213 (7%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+++ LF+ E ++++WN +++G V+WG++ AR LF+ MP R+VVSW ++ GY R
Sbjct: 178 VEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYAR- 236
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
G + RR+ T AV QNG + + + +R ++
Sbjct: 237 ---RGDMVEARRLFDAAPVR-DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSW--- 289
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
N ++ Y + + A +LF + +N+ SW ++++G+A GM +EA F+ M
Sbjct: 290 --NAMVAAYIQRRMMDEAKELFNMMPC--RNVASWNTMLTGYAQAGMLEEAKAVFDTMP- 344
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKM 214
+ + V++ ++L A S GG EE L+ F +M
Sbjct: 345 ---QKDAVSWAAMLAAYSQGGCSEETLQLFIEM 374
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 121/276 (43%), Gaps = 31/276 (11%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E ++ N IT ++ G + A LF MP R+ ++ ++ GY+ R A +LFR
Sbjct: 35 EPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRA 94
Query: 74 MVACE-YTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS---NCLIDT 129
+ + Y+ + + LAV ++ D R F+ + S N +I +
Sbjct: 95 IPRPDNYSYNTLLHALAVSSSL---ADARGL-----------FDEMPVRDSVTYNVMISS 140
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
+A G + A F D++ E K+ VSW +++ + +G +EA F + + +
Sbjct: 141 HANHGLVSLARHYF-DLAPE-KDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW----DVI 194
Query: 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
++ ++++ G + E + FD+M D+ + ++ R G + +A ++
Sbjct: 195 SWNALMSGYVQWGKMSEARELFDRMPGR-----DVVSWNIMVSGYARRGDMVEARRLFDA 249
Query: 250 IPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
P + +V W ++ + +G +E RV + E
Sbjct: 250 AP--VRDVFTWTAVVSGYAQNGMLEEARRVFDAMPE 283
>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Glycine max]
Length = 548
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 113/327 (34%), Positives = 192/327 (58%), Gaps = 4/327 (1%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
K+FD + ++N+V+WN M+ G K GE+ A+ FE M ++V SW+ +IDGY +
Sbjct: 168 AQKVFDSIQQKNVVSWNSMLDGYAKCGEMVMAQKAFESMSEKDVRSWSSLIDGYVKAGEY 227
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
+ A+A+F +M + + +E+T+++V A G + ++I+ Y G + +
Sbjct: 228 SEAMAIFEKMQSAG-PKANEVTMVSVSCACAHMGALEKGRMIYKYIVDNGL-PLTLVLQT 285
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
L+D YAKCG I AL +F +S + +++ W ++I G A HG+ +E+++ F+ MQ V +
Sbjct: 286 SLVDMYAKCGAIEEALLIFRRVSKSQTDVLIWNAVIGGLATHGLVEESLKLFKEMQIVGI 345
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
P+ VT+L +L AC+HGGLV+E FF+ + +C + P +HY C++D+L RAG+L A
Sbjct: 346 CPDEVTYLCLLAACAHGGLVKEAWFFFESL-SKCGMTPTSEHYACMVDVLARAGQLTTAY 404
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+ +P+E T ++ LL C H N+ + E V RK++E+E + G Y+ + N+ A
Sbjct: 405 QFICQMPTEPTASML-GALLSGCINHRNLALAEIVGRKLIELEPNHDGRYIGLSNMYAVD 463
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
R+ DA +R ++ R K PG S V
Sbjct: 464 KRWDDARSMREAMERRGVKKSPGFSFV 490
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 143/289 (49%), Gaps = 34/289 (11%)
Query: 25 TGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM----VACEY- 79
+ L G++ Y+ +F ++ + SW II GY+ +L++F +M VA +Y
Sbjct: 56 SALSNSGDINYSYRVFSQLSSPTIFSWNTIIRGYSNSKNPIQSLSIFLKMLRLGVAPDYL 115
Query: 80 TEP----------SEITILAVFPAIWQNGD-----VRNCQLIHGYG-------EKRGFNA 117
T P ++ T ++V I + G ++N LIH Y ++ F++
Sbjct: 116 TYPFLVKASARLLNQETGVSVHAHIIKTGHESDRFIQN-SLIHMYAACGNSMWAQKVFDS 174
Query: 118 FH---IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVE 174
+ N ++D YAKCG + A K FE +S K++ SW+S+I G+ G EA+
Sbjct: 175 IQQKNVVSWNSMLDGYAKCGEMVMAQKAFESMS--EKDVRSWSSLIDGYVKAGEYSEAMA 232
Query: 175 NFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDML 234
FE+MQ K N VT +SV AC+H G +E+G + +V+ L + L+DM
Sbjct: 233 IFEKMQSAGPKANEVTMVSVSCACAHMGALEKGRMIYKYIVDNGLPLTLVLQTS-LVDMY 291
Query: 235 GRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
+ G +E+A + + T+V++W ++G + HG VE ++ +++
Sbjct: 292 AKCGAIEEALLIFRRVSKSQTDVLIWNAVIGGLATHGLVEESLKLFKEM 340
>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
Length = 802
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 112/323 (34%), Positives = 187/323 (57%), Gaps = 5/323 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FD + +++V+WN +++G V+ L+ A +FEEMP +N +SW ++ GY S
Sbjct: 354 RIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSED 413
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL LF RM A E +P + T A + G +++ + +HG+ + GF + N L
Sbjct: 414 ALKLFNRMRA-EDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSN-SAGNAL 471
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
I YA+CG + A +F + + + VSW ++IS HG G+EA+E F+RM + P
Sbjct: 472 ITMYARCGAVKEANLMF--LVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYP 529
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+R++FL+VL AC+H GLV+EG ++F+ M + ++P HY LID+LGRAGR+ +A +
Sbjct: 530 DRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDL 589
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E T +W +L C G++E+G ++ +M + G Y+L+ N + R
Sbjct: 590 IKTMPFEPTP-SIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGR 648
Query: 307 YGDAERLRRVVDERNALKFPGRS 329
+ DA R+R+++ +R K PG S
Sbjct: 649 WVDAARVRKLMRDRGVKKEPGCS 671
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 129/247 (52%), Gaps = 11/247 (4%)
Query: 3 KDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
+D K+ DE+P+++ +TW M+ G V+ G++ ARS+FEE+ + V W +I GY
Sbjct: 214 RDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSG 273
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN---AFH 119
A LFRRMV E E T +V A G + + +HG + N
Sbjct: 274 MVVEAFELFRRMV-LERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAA 332
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+ V+N L+ Y+KCG I A ++F+++ + K++VSW +I+SG+ +AVE FE M
Sbjct: 333 LPVNNALVTLYSKCGNIAVARRIFDNM--KSKDVVSWNTILSGYVESSCLDKAVEVFEEM 390
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
N ++++ +++ HGG E+ LK F++M E +V P Y I G G
Sbjct: 391 P----YKNELSWMVMVSGYVHGGFSEDALKLFNRMRAE-DVKPCDYTYAGAISACGELGS 445
Query: 240 LEQAEKV 246
L+ +++
Sbjct: 446 LKHGKQL 452
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 119/288 (41%), Gaps = 46/288 (15%)
Query: 18 VTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
V ++ G L A S F+ +P R+ V +I Y R + + A+A+FR ++
Sbjct: 89 VAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLL 148
Query: 76 ACEYTEPSEITILAVFPAIWQ--NGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
A P + + A+ A N VR+C + K G + VSN L+ Y KC
Sbjct: 149 ASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGV-LSVSNALVALYMKC 207
Query: 134 ----------------------------------GCIFSALKLFEDISVERKNLVSWTSI 159
G + +A +FE++ V K V W ++
Sbjct: 208 EALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDV--KFDVVWNAM 265
Query: 160 ISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVE-EC 218
ISG+ GM EA E F RM + + TF SVL+AC++ G G ++ +
Sbjct: 266 ISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQP 325
Query: 219 EVLPD--IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
+P+ + L+ + + G + A ++ + S+ +VV W T+L
Sbjct: 326 NFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSK--DVVSWNTIL 371
>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 792
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 175/311 (56%), Gaps = 5/311 (1%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
+ T K E+E AR LF+E P +++ SW +I GYT+ + A++LFR M E++
Sbjct: 358 TALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFS 417
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P+ +TI + A Q G + + +H F + I+VS LI YAKCG I A
Sbjct: 418 -PNPVTITCILSACAQLGALSLGKWVHDLVRSTDFES-SIYVSTALIGMYAKCGSIAEAR 475
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
+LF+ + +KN V+W ++ISG+ +HG G+EA+ F M + P VTFL VL ACSH
Sbjct: 476 RLFD--FMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSH 533
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
GLV+EG + F+ M+ P +KHY C++D+LGRAG L++A + +P + VW
Sbjct: 534 AGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQ-PGPSVW 592
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320
TLLGAC H + + V+ K+ E++ G +VL+ NI + Y A +R+ +R
Sbjct: 593 ETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKR 652
Query: 321 NALKFPGRSLV 331
K PG +L+
Sbjct: 653 KLAKAPGYTLI 663
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 130/258 (50%), Gaps = 14/258 (5%)
Query: 19 TWNVMITGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
+ + ++TG + K G+++ A +LF E ++V++ +I GYT + +L+LF+ +
Sbjct: 254 SHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKEL 313
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
+ S T++++ P +G + IHGY K F + H VS L Y+K
Sbjct: 314 MLSGAKLKSS-TLVSLVPV---SGHLMLIYAIHGYSLKSNFLS-HTSVSTALTTVYSKLN 368
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
I SA KLF++ K+L SW ++ISG+ +G+ ++A+ F MQ PN VT +
Sbjct: 369 EIESARKLFDE--SPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCI 426
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L+AC+ G + G K+ +V + I LI M + G + +A ++ +P +
Sbjct: 427 LSACAQLGALSLG-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKK- 484
Query: 255 TNVVVWRTLLGACSFHGN 272
N V W T++ HG+
Sbjct: 485 -NEVTWNTMISGYGLHGH 501
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 86/176 (48%), Gaps = 3/176 (1%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
K+ +E AR +F+ MP ++ + W +I GY + ++ +FR ++ T T+L
Sbjct: 166 KFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLL 225
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
+ PA+ + ++R IH K G + H +V I Y+KCG I A LF +
Sbjct: 226 DILPAVAELQELRLGMQIHSLATKTGCYS-HDYVLTGFISLYSKCGKIKMASTLFREF-- 282
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLV 204
R ++V++ ++I G+ +G + ++ F+ + K T +S++ H L+
Sbjct: 283 RRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLI 338
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 86/187 (45%), Gaps = 5/187 (2%)
Query: 15 RNLVTWNVMITG-LVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
RN ++ +T L G + YAR +F + +V + ++ G++ + +LA+F
Sbjct: 49 RNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLAVFAH 108
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
+ +P+ T A D R +IHG G ++ + SN ++ Y K
Sbjct: 109 LRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQAIVDGCDSELLLGSN-IVKMYFKF 167
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF-ERMQKVVLKPNRVTFL 192
+ A K+F+ + K+ + W ++ISG+ + M E+++ F + + + + + T L
Sbjct: 168 WRVEDARKVFDRMP--EKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLL 225
Query: 193 SVLNACS 199
+L A +
Sbjct: 226 DILPAVA 232
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 117/318 (36%), Positives = 194/318 (61%), Gaps = 7/318 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL N +I +K GE+E A LFE + ++V+SW +I GYT MN AL LF+ M+
Sbjct: 269 NLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEML 328
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR--GFNAFHIHVSNCLIDTYAKC 133
+ P+++T+L++ PA G + + IH Y KR G H ++ LID YAKC
Sbjct: 329 RSGES-PNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTS-LIDMYAKC 386
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G I +A ++F+ S+ ++L SW ++I GFAMHG A + F RM+K ++P+ +TF+
Sbjct: 387 GDIEAAQQVFD--SILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVG 444
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L+ACSH G+++ G F M E+ ++ P ++HYGC+ID+LG +G ++AE++ + + E
Sbjct: 445 LLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEME 504
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
+ V+W +LL AC + NVE+GE + ++++E G YVL+ NI A R+ + ++
Sbjct: 505 -PDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKI 563
Query: 314 RRVVDERNALKFPGRSLV 331
R +++++ K PG S +
Sbjct: 564 RALLNDKGMKKVPGCSSI 581
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 149/273 (54%), Gaps = 11/273 (4%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+D K+FD+ R++V++ +ITG G + A+ +F+E+P ++VVSW +I GY
Sbjct: 154 LEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAET 213
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ AL LF+ M+ P E T+++V A Q+ + + +H + + GF + ++
Sbjct: 214 GNNKEALELFKEMMKTN-VRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGS-NLK 271
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N LID Y KCG + +A LFE +S K+++SW ++I G+ + KEA+ F+ M +
Sbjct: 272 IVNALIDLYIKCGEVETACGLFEGLSY--KDVISWNTLIGGYTHMNLYKEALLLFQEMLR 329
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEG---LKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
PN VT LS+L AC+H G +E G + +K ++ V H LIDM + G
Sbjct: 330 SGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLK--GVANASSHRTSLIDMYAKCG 387
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+E A++V I + ++ W ++ + HG
Sbjct: 388 DIEAAQQVFDSILNR--SLSSWNAMIFGFAMHG 418
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 5/145 (3%)
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198
A+ +FE +++ NL+ W ++ G A+ A+ + M + L PN TF +L +C
Sbjct: 56 AISVFE--TIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSC 113
Query: 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
+ EG + +++ L D+ + LI M + GRLE A KV S +VV
Sbjct: 114 AKSKAFREGQQIHGHVLKLGYDL-DLYVHTSLISMYVQNGRLEDARKVFD--QSSHRDVV 170
Query: 259 VWRTLLGACSFHGNVEMGERVTRKI 283
+ L+ + G + +++ +I
Sbjct: 171 SYTALITGYASKGYIASAQKMFDEI 195
>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 795
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 114/328 (34%), Positives = 186/328 (56%), Gaps = 5/328 (1%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ ++FD++P R++++WN +++G V +E A S+F EMP RNV++WT +I G +
Sbjct: 344 EARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGF 403
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
L LF +M + E EP + A G + N Q IH + G ++ +
Sbjct: 404 GEEGLKLFNQMKS-EGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDS-GLSAG 461
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N LI Y++CG + SA +F +++ + VSW ++I+ A HG G +A+E FE+M K
Sbjct: 462 NALITMYSRCGVVESAESVF--LTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKED 519
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
+ P+R+TFL++L AC+H GL++EG +FD M + P HY LID+L RAG +A
Sbjct: 520 ILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKA 579
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
+ V +P E +W LL C HGN+E+G + ++LE+ G G Y+++ N+ A
Sbjct: 580 QSVIKSMPFE-AGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAA 638
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
+ ++ + R+R ++ ER K PG S V
Sbjct: 639 LGQWDEVARVRLLMRERGVKKEPGCSWV 666
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 145/329 (44%), Gaps = 44/329 (13%)
Query: 1 FLKDGSKLFDELPERNLV--TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGY 58
+ K+FDE P+ + +W MI G V+ +L AR L + + V+W +I GY
Sbjct: 199 LMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGY 258
Query: 59 TRMNRSNGALALFRRM--VACEYTEPSEITILAVFPAIWQNGDVRNC-QLIHGYGEKRGF 115
R A FRRM + + E + ++++ + + + NC + +HGY +
Sbjct: 259 VRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVV 318
Query: 116 NAFH---IHVSNCLIDTYAKCGCIFSALKLFEDISVE----------------------- 149
H + V+N LI Y K + A ++F+ + V
Sbjct: 319 EPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANS 378
Query: 150 ------RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGL 203
+N+++WT +ISG A +G G+E ++ F +M+ L+P F + ACS G
Sbjct: 379 IFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGS 438
Query: 204 VEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTL 263
++ G + +++ + LI M R G +E AE V +P + V W +
Sbjct: 439 LDNGQQIHSQVIRLGHD-SGLSAGNALITMYSRCGVVESAESVFLTMP--YVDSVSWNAM 495
Query: 264 LGACSFHGN----VEMGERVTRKILEMER 288
+ A + HG+ +E+ E++ ++ + +R
Sbjct: 496 IAALAQHGHGVKAIELFEQMMKEDILPDR 524
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/358 (22%), Positives = 147/358 (41%), Gaps = 85/358 (23%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDGYTRMNRS 64
KLFD++P+ ++V +++ G ++ A+ LF P R+ VS+ +I Y+ N
Sbjct: 61 KLFDKIPKPDIVARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDG 120
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDV-RNCQLIHGYGEKRGFNAFHIHVS 123
+ AL LF +M + P T +V A+ D R+CQ++H K G V+
Sbjct: 121 HAALNLFVQMKRYGFL-PDPFTFSSVLSALSLIADEERHCQMLHCEVIKLG-TLLIPSVT 178
Query: 124 NCLIDTYAKCGC---------IFSALKLFEDISVERKNLVSWTS---------------- 158
N L+ Y C + SA K+F++ + SWT+
Sbjct: 179 NALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARE 238
Query: 159 ---------------IISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS---- 199
+ISG+ G+ +EA + F RM + ++ + T+ S+++AC
Sbjct: 239 LLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNE 298
Query: 200 -----------HG----GLVEEGLKF--------------FDKMVEECEV---LP--DIK 225
HG +VE F +D+M+E V +P DI
Sbjct: 299 KMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDII 358
Query: 226 HYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
+ ++ A R+E+A + S +P NV+ W ++ + +G E G ++ ++
Sbjct: 359 SWNAVLSGYVNAQRIEEANSIFSEMPER--NVLTWTVMISGLAQNGFGEEGLKLFNQM 414
>gi|345505224|gb|AEN99836.1| chlororespiratory reduction 4, partial [Lepidium virginicum]
Length = 594
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 120/330 (36%), Positives = 186/330 (56%), Gaps = 6/330 (1%)
Query: 3 KDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
+D L+D +P R+++TW MI G VK G + A++L + +P R+VV++ ++ GY +
Sbjct: 250 EDAKDLYDVMPRRDVITWATMIDGYVKLGFVHQAKTLLDXIPHRDVVAYNSMMAGYVQNK 309
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYG-EKRGFNAFHIH 121
AL LF M + P E T++ V AI Q G + ++ Y +K+ F +
Sbjct: 310 YHMEALELFGDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDMYLYVVKKQFFLGGKLW 369
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VS LID Y+KCG I A+ +FE +E K + W +II G A+HG G A ++++
Sbjct: 370 VS--LIDMYSKCGSIQHAMLVFE--GLENKTIDHWNAIIGGLAIHGRGGPAFNMLLQIER 425
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KP+ +TF VLNACSH G V+EGL F+ M + ++ P ++HYGC++D+L R+G +E
Sbjct: 426 SSIKPDDITFTGVLNACSHSGFVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIE 485
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A+ + +P E N V+WRT L ACS H EMGE V + ++ YVL+ N+
Sbjct: 486 LAKNLIEKMPIE-PNDVIWRTFLTACSHHKEFEMGELVAKHLILQADYNPSSYVLLSNMY 544
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + D +R ++ ER K PG S +
Sbjct: 545 ASFGMWKDVRGVRTMMKERKIPKIPGCSSI 574
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 128/318 (40%), Gaps = 84/318 (26%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYAR----------------------------- 37
++FD +P+R+ V++N G VK G +E AR
Sbjct: 158 QIFDRMPKRDSVSYNPXXEGXVKCGLIESARELFXLXXXEXKNXXSXXCMXSGYAQTSDG 217
Query: 38 -----SLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
LF EMP ++++SW IIDGY + R A L+ M P I
Sbjct: 218 LXIASKLFSEMPEKDLISWNSIIDGYVKHGRXEDAKDLYDVM-------PRRDVI----- 265
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
W +ID Y K G + A L + I ++
Sbjct: 266 -TWAT----------------------------MIDGYVKLGFVHQAKTLLDXIP--HRD 294
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFLSVLNACSHGGLVEEGLKFF 211
+V++ S+++G+ + EA+E F M+K L P+ T + VL+A + G + + + +
Sbjct: 295 VVAYNSMMAGYVQNKYHMEALELFGDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDMY 354
Query: 212 DKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+V++ + K + LIDM + G ++ A V G+ E + W ++G + HG
Sbjct: 355 LYVVKK-QFFLGGKLWVSLIDMYSKCGSIQHAMLVFEGL--ENKTIDHWNAIIGGLAIHG 411
Query: 272 NVEMGERVTRKILEMERG 289
G +L++ER
Sbjct: 412 R---GGPAFNMLLQIERS 426
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 100/239 (41%), Gaps = 20/239 (8%)
Query: 34 EYARSLFEE-----MP---CRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEI 85
E+AR +FEE P + W ++ ++ AL LF M+ +
Sbjct: 45 EFARCVFEEHYVYSFPYGETEDPFLWNAVMKSHSHGTDPRRALLLFCLMLE-NGVSVDKF 103
Query: 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFED 145
+ V A + G V+ IHG+ K G + + + NCLI Y KCGC+ A ++F+
Sbjct: 104 SSSLVLKACSRLGFVKGGMQIHGFLRKTGLWS-DLFLQNCLIALYLKCGCLGFARQIFD- 161
Query: 146 ISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVE 205
+ +++ VS+ G G+ + A E F + A + GL
Sbjct: 162 -RMPKRDSVSYNPXXEGXVKCGLIESARELFXLXXXEXKNXXSXXCMXSGYAQTSDGLXI 220
Query: 206 EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
K F +M E+ D+ + +ID + GR E A+ + +P +V+ W T++
Sbjct: 221 AS-KLFSEMPEK-----DLISWNSIIDGYVKHGRXEDAKDLYDVMPRR--DVITWATMI 271
>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 113/327 (34%), Positives = 185/327 (56%), Gaps = 8/327 (2%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FDE+P V+W VMI+G K G++E AR LF+E P ++ W II GY + N
Sbjct: 162 IFDEMPWHTAVSWTVMISGYAKVGDVETARMLFDEAPMKDRGIWGSIISGYVQNNCFKEG 221
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L +FR M + EP E ++++ A G + +H Y ++ G + + +S LI
Sbjct: 222 LQMFRLMQSTGL-EPDEAILVSILCACAHLGAMEIGVWVHRYLDQLG-HPLSVRLSTGLI 279
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D YAKCG + A KLF+ +S +++ + W ++ISG AM+G G A+ F M+K +KP+
Sbjct: 280 DMYAKCGSLDIAKKLFDGMS--QRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVKPD 337
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TF+++ ACS+ G+ E ++ + M + P +HYGC++D+LGRAG L++A+++
Sbjct: 338 DITFIAIFTACSYSGMAHEAIRLLNSMCTVYNMEPKSEHYGCIVDLLGRAGLLKEAKELI 397
Query: 248 SGIP---SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+P S + WR LL AC HG E+ E +++ +E + G YVL+ N+ A
Sbjct: 398 LKMPNSSSPTEQAIAWRALLSACCSHGQTEVAEDAAQRLFHLEH-HSGAYVLLSNLYAAA 456
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
+ R+R++++ R K PG S V
Sbjct: 457 GKQDHVRRIRKMMENRGVDKAPGCSSV 483
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 77/202 (38%), Gaps = 37/202 (18%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L KLFD + +R+ + WN MI+G+ G+ + A LF EM V
Sbjct: 288 LDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGV------------- 334
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNC-QLIHGYGEKRGFNAFHI 120
+P +IT +A+F A +G +L++
Sbjct: 335 -------------------KPDDITFIAIFTACSYSGMAHEAIRLLNSMCTVYNMEPKSE 375
Query: 121 HVSNCLIDTYAKCGCIFSALKL---FEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
H C++D + G + A +L + S + ++W +++S HG + A + +
Sbjct: 376 HY-GCIVDLLGRAGLLKEAKELILKMPNSSSPTEQAIAWRALLSACCSHGQTEVAEDAAQ 434
Query: 178 RMQKVVLKPNRVTFLSVLNACS 199
R+ + LS L A +
Sbjct: 435 RLFHLEHHSGAYVLLSNLYAAA 456
>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 178/309 (57%), Gaps = 5/309 (1%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N + K G LE R +F M R+++SWT ++ Y++ + + A+ +F M A E
Sbjct: 415 NAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRA-EGI 473
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P++ T +V + + Q +HG K G + + + L+D YAKCGC+ A
Sbjct: 474 APNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKC-IESALVDMYAKCGCLGDAK 532
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
K+F IS + VSWT+II+G A HG+ +A++ F RM ++ ++PN VTFL VL ACSH
Sbjct: 533 KVFNRIS--NADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSH 590
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
GGLVEEGL++F M + ++P+++HY C++D+L R G L A + S +P E N +VW
Sbjct: 591 GGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVE-PNEMVW 649
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320
+TLLGAC HGNVE+GE +KIL + YVL+ N Y D LR ++ E+
Sbjct: 650 QTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHLMKEQ 709
Query: 321 NALKFPGRS 329
K PG S
Sbjct: 710 GVKKEPGCS 718
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 111/240 (46%), Gaps = 4/240 (1%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
K E+E + +F M NVVSW +I G+T + A LF RM+ E P T +
Sbjct: 218 KLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMG-EGVTPDAQTFI 276
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
V AI DV + + GY + G ++ + V LID +KCG + A +F +
Sbjct: 277 GVAKAIGMLRDVNKAKEVSGYALELGVDS-NTLVGTALIDMNSKCGSLQEARSIFNSHFI 335
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
+ W ++ISG+ G ++A+E F +M + + + T+ SV NA + + G
Sbjct: 336 TCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGK 395
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
K + ++ + + + + + G LE KV + + E +++ W +L+ A S
Sbjct: 396 KVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRM--EDRDLISWTSLVTAYS 453
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 98/233 (42%), Gaps = 5/233 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+LV N + K +++ A LF++M RN SWT +I G F
Sbjct: 102 HHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCE 161
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M + + P + + + ++H RGF + H VS L++ YAK
Sbjct: 162 MQS-QGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTS-HTFVSTALLNMYAKL 219
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
I + K+F ++ N+VSW ++I+GF + + +A + F RM + P+ TF+
Sbjct: 220 QEIEDSYKVFNTMT--EVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIG 277
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
V A V + K E V + LIDM + G L++A +
Sbjct: 278 VAKAIGMLRDVNKA-KEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSI 329
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 14/170 (8%)
Query: 100 VRNCQLIHGYGEKRGFNAFH-IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 158
++ + +HG+ K F+ H + + N + Y+KC I +A +LF+ +S ++N SWT
Sbjct: 84 LKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMS--QRNTFSWTV 141
Query: 159 IISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEEC 218
+I+G A +G+ + E F MQ + P++ + +L C +E G MV
Sbjct: 142 LIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELG-----NMVHAQ 196
Query: 219 EVLPDIKHY----GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
V+ + L++M + +E + KV + + NVV W ++
Sbjct: 197 IVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTE--VNVVSWNAMI 244
>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
Length = 663
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 126/328 (38%), Positives = 185/328 (56%), Gaps = 31/328 (9%)
Query: 8 LFDELPERNLVTWNVMITGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+FD++ ER++V+W T L+ K G L AR LF + + VVSWT +I G R NR
Sbjct: 216 VFDKMMERDVVSWIPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNR 275
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
LF RM E P+EIT+L N + I ++
Sbjct: 276 LEEGTKLFIRMQE-ENIFPNEITML--------NKERVEVDCI---------------LN 311
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
L+D YAKCG I +A +LF I +++ W +II+GFAMHG G+EA++ F M++
Sbjct: 312 TALVDMYAKCGDINAAGRLF--IEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQG 369
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
+KPN +TF+ +L+ACSH GLV EG K F+KMV ++P I+HYGC++D+LGRAG L++A
Sbjct: 370 VKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEA 429
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
++ +P + N +VW L+ AC H N ++GE ++LE+E G VLM NI A
Sbjct: 430 HEMIKSMPIK-PNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAA 488
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
R+ DA +R+ + K PG S++
Sbjct: 489 ANRWSDAAGVRKTMKTVGMKKEPGHSVI 516
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 115/258 (44%), Gaps = 33/258 (12%)
Query: 49 VSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHG 108
W +I YT+ N+ AL ++ ++ ++ E +V A Q + + IHG
Sbjct: 125 AQWNFVITSYTKRNQPRNALNVYAQLRKMDF-EVDNFMAPSVLKACGQVSWTQLGKEIHG 183
Query: 109 YGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW----TSIISGFA 164
+ K+G + + V N L+ Y +C C+ A +F+ + +ER ++VSW T+++ +A
Sbjct: 184 FVLKKGLDR-DVFVGNALMLMYGECACVEYARLVFDKM-MER-DVVSWIPTTTALLDMYA 240
Query: 165 MHGMGKEAVENFERM-QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP- 222
G A + F + QK V V++ +++ C +EEG K F +M EE + P
Sbjct: 241 KCGHLGLARQLFNGLTQKTV-----VSWTAMIAGCIRSNRLEEGTKLFIRMQEE-NIFPN 294
Query: 223 ------------DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
D L+DM + G + A ++ I + ++ +W ++ + H
Sbjct: 295 EITMLNKERVEVDCILNTALVDMYAKCGDINAAGRLF--IEAISRDICMWNAIITGFAMH 352
Query: 271 GNVEMGERVTRKILEMER 288
G GE EMER
Sbjct: 353 G---YGEEALDIFAEMER 367
>gi|357132191|ref|XP_003567715.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Brachypodium distachyon]
Length = 656
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 110/333 (33%), Positives = 191/333 (57%), Gaps = 12/333 (3%)
Query: 2 LKDGSKLFDELPER-NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L D +K+ +L ++ ++ +WN + G+V+ + AR LF+ MP ++ +SW+ ++ GY +
Sbjct: 327 LLDLAKMQFKLSDKSHIASWNAFMAGIVRKNLMHEARQLFDNMPEKDTISWSTLLSGYVQ 386
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
S+ AL LF M+ +P+ IT+ + A+ +G + + IH Y + I
Sbjct: 387 SGHSDMALQLFCLMLGAG-VKPNHITLASTLSAVANSGTLEQGRWIHDYIISKS-----I 440
Query: 121 HVSNCLI----DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
H+++ LI D YAKCG + A+ LF + + +L W ++I A+HG ++E F
Sbjct: 441 HLTDNLIAGLIDMYAKCGSVADAVLLFNHVKEKLSSLSPWNAMICSLAIHGHAHMSLELF 500
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
++Q +KPN +T++ VLNAC H G+V EG F+ M E + P IKHYGC++D+LGR
Sbjct: 501 SQLQSSNIKPNSITYIGVLNACCHAGMVTEGKHHFESMRREYGIPPTIKHYGCMVDLLGR 560
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
AG LE+AE++ +P + ++VV+W ++L A HGNV +GE+ ++ +++ +G V
Sbjct: 561 AGYLEEAERLIKTMPVK-SDVVIWGSILAAARSHGNVALGEKAAEELAKLDPNHGASKVA 619
Query: 297 MYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
+ NI A R+ + +R+ + N + G S
Sbjct: 620 LCNIYADAGRWNNVSVVRKELRYENLERLSGSS 652
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 144/300 (48%), Gaps = 37/300 (12%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+F+ +P++N VTWN M+ G VK G ++ A +FE +P R+VVSW +IDGY R + + A
Sbjct: 201 VFEWMPDKNTVTWNAMLNGYVKAGAIDMAAEMFERIPERDVVSWLVMIDGYIRADCISEA 260
Query: 68 LALFRRMVACEYTEPSEITILAVF-PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
L + M+A E + +L F A ++ V Q +H K GF+ H+ V L
Sbjct: 261 LRTYVAMMA-EVDTRGNVALLVDFQKACARHAAVLEGQQLHTVILKDGFDT-HLFVQATL 318
Query: 127 IDTYAKC-------------------------------GCIFSALKLFEDISVERKNLVS 155
I Y C + A +LF+++ K+ +S
Sbjct: 319 IHFYGSCDLLDLAKMQFKLSDKSHIASWNAFMAGIVRKNLMHEARQLFDNM--PEKDTIS 376
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215
W++++SG+ G A++ F M +KPN +T S L+A ++ G +E+G D ++
Sbjct: 377 WSTLLSGYVQSGHSDMALQLFCLMLGAGVKPNHITLASTLSAVANSGTLEQGRWIHDYII 436
Query: 216 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEM 275
+ L D G LIDM + G + A + + + +++++ W ++ + + HG+ M
Sbjct: 437 SKSIHLTDNLIAG-LIDMYAKCGSVADAVLLFNHVKEKLSSLSPWNAMICSLAIHGHAHM 495
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 112/217 (51%), Gaps = 14/217 (6%)
Query: 8 LFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 65
LFDE+P R+ N ++ L + G L++A+ + EMP R+ VS+T ++ R +
Sbjct: 67 LFDEIPLALRDAAAHNTLLAALARGGHLDHAKRMLAEMPQRDTVSFTTVLTALARAGHAE 126
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
A+A+FR M+A + P+E+T+ V A+ ++ ++HG +RG + F I +N
Sbjct: 127 DAMAVFRGMLAQD-VPPNEVTLAGVITALARDWAPAPLGMVHGVSVQRGLDGFVIVATN- 184
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
L+ YA + A +FE + KN V+W ++++G+ G A E FER+
Sbjct: 185 LVHAYAAAAQVGFARAVFE--WMPDKNTVTWNAMLNGYVKAGAIDMAAEMFERI------ 236
Query: 186 PNR--VTFLSVLNACSHGGLVEEGLKFFDKMVEECEV 220
P R V++L +++ + E L+ + M+ E +
Sbjct: 237 PERDVVSWLVMIDGYIRADCISEALRTYVAMMAEVDT 273
>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
gi|223942207|gb|ACN25187.1| unknown [Zea mays]
gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
Length = 885
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 108/328 (32%), Positives = 187/328 (57%), Gaps = 4/328 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ +F + E+++V+W MIT + G + AR F+ M +NV++W ++ Y +
Sbjct: 442 LQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQH 501
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
L +++ M++ EY P +T + +F G + I G K G
Sbjct: 502 GAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGL-IIDTS 560
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V+N +I Y+KCG I A K+F+ ++V K++VSW ++I+G++ HGMGK+A+E F+ + K
Sbjct: 561 VANAVITMYSKCGRILEARKVFDFLNV--KDIVSWNAMITGYSQHGMGKQAIEIFDDILK 618
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KP+ +++++VL+ CSH GLV+EG +FD M + P ++H+ C++D+LGRAG L
Sbjct: 619 RGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLT 678
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A+ + +P + T VW LL AC HGN E+ E + + E++ G Y+LM I
Sbjct: 679 EAKDLIDDMPMKPT-AEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIY 737
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRS 329
A + D+ ++R+++ ++ K PG S
Sbjct: 738 ADAGKSDDSAQIRKLMRDKGIKKNPGYS 765
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 140/319 (43%), Gaps = 48/319 (15%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
S+LF + E + N M+ G VK +++A LF+ MP R+VVSW ++ ++ R
Sbjct: 212 ASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRV 271
Query: 65 NGALALFRRMVAC-----EYTEPSEITILAVFPAI-WQNGDVRNCQLIHGYGEKRGFNAF 118
AL + M + T S +T A ++ W G + Q+I R
Sbjct: 272 REALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRW--GKQLHAQVI------RNLPHI 323
Query: 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER 178
+V++ L++ YAK GC A +F S+ +N V+WT +ISGF +G E+VE F +
Sbjct: 324 DPYVASALVELYAKSGCFKEAKGVFN--SLHDRNNVAWTVLISGFLQYGCFTESVELFNQ 381
Query: 179 MQKVVLKPNRVTFLSVLNACS-----------HGGLVEEGL-------KFFDKMVEECEV 220
M+ ++ ++ ++++ C H ++ G M +C+
Sbjct: 382 MRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDN 441
Query: 221 L------------PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
L DI + +I + G + +A + G+ + NV+ W +LGA
Sbjct: 442 LQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEK--NVITWNAMLGAYI 499
Query: 269 FHGNVEMGERVTRKILEME 287
HG E G R+ + +L E
Sbjct: 500 QHGAEEDGLRMYKVMLSEE 518
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/320 (20%), Positives = 137/320 (42%), Gaps = 49/320 (15%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
L ++ N++T NVM+ G K G L A LF MP R+V SW ++ GY + + +
Sbjct: 82 LLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVS 141
Query: 68 LALFRRMVACEYTEPSEITILAVFPAI----WQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
L F M + P+ T+ + W + ++ ++ + + V+
Sbjct: 142 LETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSE-----VA 196
Query: 124 NCLIDTYAKCGCIFSALKLFEDI-----------------------------SVERKNLV 154
L+D + +CG + A +LF I S+ +++V
Sbjct: 197 AALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVV 256
Query: 155 SWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKM 214
SW ++S + G +EA++ MQ ++ + T+ S L AC+ + G + ++
Sbjct: 257 SWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQV 316
Query: 215 VEECEVLPDIKHY--GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG- 271
+ LP I Y L+++ ++G ++A+ V + + N V W L+ +G
Sbjct: 317 IRN---LPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDR--NNVAWTVLISGFLQYGC 371
Query: 272 ---NVEMGERVTRKILEMER 288
+VE+ ++ +++ +++
Sbjct: 372 FTESVELFNQMRAELMTLDQ 391
>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 719
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 117/324 (36%), Positives = 187/324 (57%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LF+++P R++V+WN MI G + +E A LF MP RNVVSW ++ Y R+ +
Sbjct: 278 LFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDEC 337
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L +F +M+ T P+E T+++V A G + + IH Y + + +S L+
Sbjct: 338 LRMFDKMMG--ETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALL 395
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
YAKCG + A +F+ +S +++VSW S+I G+ MHG +A+E F M+K PN
Sbjct: 396 TMYAKCGAMDLARDVFDKMS--NRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPN 453
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
TF+ VL+AC+H G++ EG +FD M ++ P ++HYGC++D+LGRAG ++ E++
Sbjct: 454 DATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELI 513
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P E +W LL AC H N E+ E V ++++E+E G Y+L+ NI A ++
Sbjct: 514 RKMPME-GGTALWGALLSACRTHSNSELAEIVAKRLIELEPRDIGPYLLLSNIYAAEGKW 572
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
D E +R+++ ER K G S V
Sbjct: 573 DDVEIVRKMMKERGLTKTTGFSWV 596
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 124/276 (44%), Gaps = 20/276 (7%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E +L N +I G + AR++FE ++V+W +IDGY + A LF
Sbjct: 191 ELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEE 250
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M E + ++ NGD+ + + R ++ NC+ID YA+
Sbjct: 251 M-----PERDLFSWNSMIAGYVGNGDMTAAEDLFNKMPFRDIVSW-----NCMIDGYAQV 300
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
+ A +LF + +N+VSW +++ + E + F++M + PN T +S
Sbjct: 301 QNMEIACELFN--WMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETM-PNEATLVS 357
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVL-PDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
VL AC+H G ++ G K+ ++ V+ PD+ L+ M + G ++ A V + +
Sbjct: 358 VLTACAHLGRLDRG-KWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSN 416
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
+VV W +++ HG ++ L+ME+
Sbjct: 417 R--SVVSWNSMIMGYGMHGQ---ADKALEMFLDMEK 447
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 102/235 (43%), Gaps = 18/235 (7%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
+++A SLFE + + I+ Y +N AL + + + P+ T +
Sbjct: 108 VQHAVSLFEGLEEPDAFICNTIMRTYVNVNDPYTALGFYYEQMVRKCVAPNHYTFPLLVK 167
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
W+ G + + + IH K GF + V N LI Y+ CG I A +FE S+ +
Sbjct: 168 VCWEIGSIGDGEKIHARILKFGFE-LDLFVRNSLIHMYSVCGRIGDARAMFEVCSI--SD 224
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL--SVLNACSHGGLVEEGLKF 210
LV+W S+I G+ +G A E FE M P R F S++ G +
Sbjct: 225 LVTWNSMIDGYVKNGEIGAARELFEEM------PERDLFSWNSMIAGYVGNGDMTAAEDL 278
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
F+KM DI + C+ID + +E A ++ + +P NVV W +L
Sbjct: 279 FNKM-----PFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYR--NVVSWNIMLA 326
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 114/313 (36%), Positives = 185/313 (59%), Gaps = 5/313 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL N +I K GE + AR LF+ + ++V+SW +I GY+ ++ ALALF M+
Sbjct: 297 NLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVML 356
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
+P+++T L + A G + + +H Y +K N+ + + LID YAKCGC
Sbjct: 357 RSN-VKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGC 415
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFLSV 194
I +A ++F S+ +NL SW +++SGFAMHG + A+ F M K + +P+ +TF+ V
Sbjct: 416 IEAAERVFR--SMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGV 473
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L+AC+ GLV+ G ++F M+++ + P ++HYGC+ID+L RA + E+AE + + E
Sbjct: 474 LSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEME- 532
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLR 314
+ +W +LL AC HG VE GE V ++ ++E G +VL+ NI AG R+ D R+R
Sbjct: 533 PDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIR 592
Query: 315 RVVDERNALKFPG 327
++++ K PG
Sbjct: 593 TRLNDKGMKKVPG 605
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 147/273 (53%), Gaps = 18/273 (6%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FD+ R+ V++ +ITG V G L+ AR LF+E+P ++VVSW +I GY + R A
Sbjct: 188 VFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEA 247
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQL---IHGYGEKRGFNAFHIHVSN 124
+ F M P++ T++ V A G R+ +L I + GF + ++ ++N
Sbjct: 248 IVCFYEMQEANVL-PNKSTMVVVLSAC---GHTRSGELGKWIGSWVRDNGFGS-NLQLTN 302
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LID Y KCG A +LF+ I E K+++SW ++I G++ + +EA+ FE M + +
Sbjct: 303 ALIDMYCKCGETDIARELFDGI--EEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNV 360
Query: 185 KPNRVTFLSVLNACSHGGLVEEG---LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KPN VTFL +L+AC+ G ++ G + DK + + + LIDM + G +E
Sbjct: 361 KPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSS---NASLWTSLIDMYAKCGCIE 417
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
AE+V + S N+ W +L + HG+ E
Sbjct: 418 AAERVFRSMHSR--NLASWNAMLSGFAMHGHAE 448
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 124/273 (45%), Gaps = 41/273 (15%)
Query: 31 GELEYARSLFEEMPCR---NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITI 87
G+L YA SLFEE NV W +I GY+ + +L LF RM+ +P+ T
Sbjct: 76 GDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYG-VQPNSHTF 134
Query: 88 LAVFPAIWQNGDVRNCQLIHGYGEKRG--FNAFHIHVS---------------------- 123
+F + + + +H + K FN H+H S
Sbjct: 135 PFLFKSCTKAKATHEGKQLHAHALKLALHFNP-HVHTSVIHMYASVGEMDFARLVFDKSS 193
Query: 124 -------NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
LI Y GC+ A +LF++I V K++VSW ++ISG+ G +EA+ F
Sbjct: 194 LRDAVSFTALITGYVSQGCLDDARRLFDEIPV--KDVVSWNAMISGYVQSGRFEEAIVCF 251
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
MQ+ + PN+ T + VL+AC H E G K+ V + +++ LIDM +
Sbjct: 252 YEMQEANVLPNKSTMVVVLSACGHTRSGELG-KWIGSWVRDNGFGSNLQLTNALIDMYCK 310
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
G + A ++ GI E +V+ W T++G S+
Sbjct: 311 CGETDIARELFDGI--EEKDVISWNTMIGGYSY 341
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 66/171 (38%), Gaps = 42/171 (24%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++ ++F + RNL +WN M++G G E A +LF EM +
Sbjct: 416 IEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEM-----------------V 458
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQ-----LIHGYGEKRGFN 116
N+ LFR P +IT + V A Q G V +I YG
Sbjct: 459 NK-----GLFR---------PDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQ 504
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 167
+ C+ID A+ A L +++ +E + W S++S HG
Sbjct: 505 HY-----GCMIDLLARAEKFEEAEILMKNMEMEPDGAI-WGSLLSACKAHG 549
>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 755
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 184/332 (55%), Gaps = 7/332 (2%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
+ + +LF+ +P RN+ +WN M+TG + G LE A+++F+ MP ++ VSW ++ Y++
Sbjct: 301 MMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQ 360
Query: 61 MNRSNGALALFRRMVAC-EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
S L LF M C E+ S V + +HG + G+
Sbjct: 361 GGCSEETLQLFIEMGRCGEWVNRSAFAC--VLSTCADIAALECGMQLHGRLIRAGY-GVG 417
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
V N L+ Y KCG + A FE++ E +++VSW ++I+G+A HG GKEA+E F+ M
Sbjct: 418 CFVGNALLAMYFKCGNMEDARNAFEEM--EERDVVSWNTMIAGYARHGFGKEALEIFDMM 475
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+ KP+ +T + VL ACSH GLVE+G+ +F M + V +HY C+ID+LGRAGR
Sbjct: 476 RTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGR 535
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
L +A + +P E + +W LLGA H N E+G KI E+E G YVL+ N
Sbjct: 536 LAEAHDLMKDMPFE-PDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSN 594
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
I A ++ DA ++R +++ER K PG S +
Sbjct: 595 IYASSGKWRDARKMRVMMEERGVKKVPGFSWI 626
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 135/285 (47%), Gaps = 45/285 (15%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + +LFD +P R++V+WN+M++G + G++ AR LF+ P R+V +WT ++ GY +
Sbjct: 209 MSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQ- 267
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG------- 114
NG L RR VF A+ + V ++ Y ++R
Sbjct: 268 ---NGMLEEARR----------------VFDAMPERNAVSWNAMVAAYIQRRMMDEAKEL 308
Query: 115 FNAF---HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKE 171
FN ++ N ++ YA+ G + A +F+ ++ +K+ VSW ++++ ++ G +E
Sbjct: 309 FNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFD--TMPQKDAVSWAAMLAAYSQGGCSEE 366
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC-- 229
++ F M + NR F VL+ C+ +E G++ +++ + GC
Sbjct: 367 TLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV------GCFV 420
Query: 230 ---LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
L+ M + G +E A + E +VV W T++ + HG
Sbjct: 421 GNALLAMYFKCGNMEDARNAFEEM--EERDVVSWNTMIAGYARHG 463
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 134/273 (49%), Gaps = 23/273 (8%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D LFDE+P R+ VT+NVMI+ G + AR F+ P ++ VSW G++ Y R
Sbjct: 116 LADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRN 175
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R A LF TE I+ A+ Q G + + + R +++I
Sbjct: 176 GRVEEARGLFN-----SRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIM 230
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VS YA+ G + A +LF+ V +++ +WT+++SG+A +GM +EA F+ M +
Sbjct: 231 VSG-----YARRGDMVEARRLFDAAPV--RDVFTWTAVVSGYAQNGMLEEARRVFDAMPE 283
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
N V++ +++ A +++E + F+ M C ++ + ++ +AG LE
Sbjct: 284 R----NAVSWNAMVAAYIQRRMMDEAKELFNMM--PCR---NVASWNTMLTGYAQAGMLE 334
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
+A+ V +P + + V W +L A S G E
Sbjct: 335 EAKAVFDTMPQK--DAVSWAAMLAAYSQGGCSE 365
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 121/276 (43%), Gaps = 31/276 (11%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E ++ N IT ++ G + A LF MP R+ ++ ++ GY+ R A +LFR
Sbjct: 35 EPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRA 94
Query: 74 MVACE-YTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS---NCLIDT 129
+ + Y+ + + LAV ++ D R F+ + S N +I +
Sbjct: 95 IPRPDNYSYNTLLHALAVSSSL---ADARGL-----------FDEMPVRDSVTYNVMISS 140
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
+A G + A F D++ E K+ VSW +++ + +G +EA F + + +
Sbjct: 141 HANHGLVSLARHYF-DLAPE-KDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW----DVI 194
Query: 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
++ ++++ G + E + FD+M D+ + ++ R G + +A ++
Sbjct: 195 SWNALMSGYVQWGKMSEARELFDRMPGR-----DVVSWNIMVSGYARRGDMVEARRLFDA 249
Query: 250 IPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
P + +V W ++ + +G +E RV + E
Sbjct: 250 AP--VRDVFTWTAVVSGYAQNGMLEEARRVFDAMPE 283
>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
Length = 648
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 117/328 (35%), Positives = 195/328 (59%), Gaps = 10/328 (3%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD + +WN MI G +K G ++ A+ LF MP ++ VSWT +I G + ++S+
Sbjct: 322 RLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSE 381
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL +F M A + +P E+T+++V A + + +H Y + + I + L
Sbjct: 382 ALTIFNNMQA-QGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVI-LGTSL 439
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV-VLK 185
ID Y KCGC+ SAL++F+ ++E + W ++I G AM+G+ ++++ F M+
Sbjct: 440 IDMYMKCGCLESALEVFD--TMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTAT 497
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN +TF VL+AC H GLVEEG FF M + ++P+I+HYGC++D+LGRAG +++AE
Sbjct: 498 PNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAEN 557
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA--G 303
+ +P +V W LLG+C HG+ E+GERV RK++ ++ + G + ++ NI A G
Sbjct: 558 LIESMPMS-PDVPAWGALLGSCWKHGDNEVGERVGRKLVNLDPHHDGFHTMLSNIYASEG 616
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
+W++ + LR + + + K PG S+V
Sbjct: 617 MWQH--VKDLRGSMKQWHVPKIPGSSVV 642
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 123/268 (45%), Gaps = 32/268 (11%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+F +PER + M++ + G ++ AR +F+ + ++V +WT +I + R + A
Sbjct: 191 VFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFAEA 250
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
LALF M E E ++ V A + RN ++ HG + G + ++V N LI
Sbjct: 251 LALFSDMRG-EGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGS-RLNVQNALI 308
Query: 128 DTYAKCGCIFSALKLFED-----------------------------ISVERKNLVSWTS 158
Y+ + +A +LF+ + K+ VSWT+
Sbjct: 309 HMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTT 368
Query: 159 IISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEEC 218
+ISG + EA+ F MQ +KP+ VT +SV++AC++ +E+G K + + E
Sbjct: 369 MISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQG-KSMHEYIREH 427
Query: 219 EVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ + LIDM + G LE A +V
Sbjct: 428 QYTITVILGTSLIDMYMKCGCLESALEV 455
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 16/150 (10%)
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 165
+H + + GF +++++N L+ Y+ CGC+ A K+F+ V + VSW +I++ +
Sbjct: 125 VHCHAVRHGFGR-NLYLANALMSMYSACGCLGDARKVFDAGPV--WDAVSWNTILAAYVQ 181
Query: 166 HGMGKEAVENFERMQKVVLKPNR--VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD 223
+AV F RM P R S+++ G+V+E K FD +VE D
Sbjct: 182 AEDVDQAVGVFARM------PERGAAAVSSMVSLFGRRGMVDEARKVFD-VVER----KD 230
Query: 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+ + +I R G+ +A + S + E
Sbjct: 231 VFTWTAMISCFQRNGKFAEALALFSDMRGE 260
>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
Length = 755
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 184/332 (55%), Gaps = 7/332 (2%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
+ + +LF+ +P RN+ +WN M+TG + G LE A+++F+ MP ++ VSW ++ Y++
Sbjct: 301 MMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQ 360
Query: 61 MNRSNGALALFRRMVAC-EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
S L LF M C E+ S V + +HG + G+
Sbjct: 361 GGCSEETLQLFIEMGRCGEWVNRSAFAC--VLSTCADIAALECGMQLHGRLIRAGY-GVG 417
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
V N L+ Y KCG + A FE++ E +++VSW ++I+G+A HG GKEA+E F+ M
Sbjct: 418 CFVGNALLAMYFKCGNMEDARNAFEEM--EERDVVSWNTMIAGYARHGFGKEALEIFDMM 475
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+ KP+ +T + VL ACSH GLVE+G+ +F M + V +HY C+ID+LGRAGR
Sbjct: 476 RTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGR 535
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
L +A + +P E + +W LLGA H N E+G KI E+E G YVL+ N
Sbjct: 536 LAEAHDLMKDMPFE-PDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSN 594
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
I A ++ DA ++R +++ER K PG S +
Sbjct: 595 IYASSGKWRDARKMRVMMEERGVKKVPGFSWI 626
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 134/273 (49%), Gaps = 23/273 (8%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D LFDE+P R+ VT+NVMI+ G + AR F+ P ++ VSW G++ Y R
Sbjct: 116 LADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRN 175
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R A LF TE I+ A+ Q G + + + R +++I
Sbjct: 176 GRVEEARGLFN-----SRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIM 230
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VS YA+ G + A +LF+ V +++ +WT+++SG+A +GM +EA F+ M +
Sbjct: 231 VSG-----YARRGDMVEARRLFDAAPV--RDVFTWTAVVSGYAQNGMLEEARRVFDAMPE 283
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
N V++ +++ A +++E + F+ M C ++ + ++ +AG LE
Sbjct: 284 R----NAVSWNAMVAAYIQRRMMDEAKELFNMM--PCR---NVASWNTMLTGYAQAGMLE 334
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
+A+ V +P + + V W +L A S G E
Sbjct: 335 EAKAVFDTMPQK--DAVSWAAMLAAYSQGGCSE 365
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 135/285 (47%), Gaps = 45/285 (15%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + +LFD +P R++V+WN+M++G + G++ AR LF+ P R+V +WT ++ GY +
Sbjct: 209 MSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQ- 267
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG------- 114
NG L RR VF A+ + V ++ Y ++R
Sbjct: 268 ---NGMLEEARR----------------VFDAMPERNAVSWNAMVAAYIQRRMMDEAKEL 308
Query: 115 FNAF---HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKE 171
FN ++ N ++ YA+ G + A +F+ ++ +K+ VSW ++++ ++ G +E
Sbjct: 309 FNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFD--TMPQKDAVSWAAMLAAYSQGGCSEE 366
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC-- 229
++ F M + NR F VL+ C+ +E G++ +++ + GC
Sbjct: 367 TLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV------GCFV 420
Query: 230 ---LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
L+ M + G +E A + E +VV W T++ + HG
Sbjct: 421 GNALLAMYFKCGNMEDARNAFEEM--EERDVVSWNTMIAGYARHG 463
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 108/213 (50%), Gaps = 16/213 (7%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+++ LF+ E + ++WN +++G V+WG++ AR LF+ MP R+VVSW ++ GY R
Sbjct: 178 VEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYAR- 236
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
G + RR+ T AV QNG + + + +R ++
Sbjct: 237 ---RGDMVEARRLFDAAPVR-DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSW--- 289
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
N ++ Y + + A +LF + +N+ SW ++++G+A GM +EA F+ M
Sbjct: 290 --NAMVAAYIQRRMMDEAKELFNMMPC--RNVASWNTMLTGYAQAGMLEEAKAVFDTMP- 344
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKM 214
+ + V++ ++L A S GG EE L+ F +M
Sbjct: 345 ---QKDAVSWAAMLAAYSQGGCSEETLQLFIEM 374
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 121/276 (43%), Gaps = 31/276 (11%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E ++ N IT ++ G + A LF MP R+ ++ ++ GY+ R A +LFR
Sbjct: 35 EPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRA 94
Query: 74 MVACE-YTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS---NCLIDT 129
+ + Y+ + + LAV ++ D R F+ + S N +I +
Sbjct: 95 IPRPDNYSYNTLLHALAVSSSL---ADARGL-----------FDEMPVRDSVTYNVMISS 140
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
+A G + A F D++ E K+ VSW +++ + +G +EA F + + +
Sbjct: 141 HANHGLVSLARHYF-DLAPE-KDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW----DAI 194
Query: 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
++ ++++ G + E + FD+M D+ + ++ R G + +A ++
Sbjct: 195 SWNALMSGYVQWGKMSEARELFDRMPGR-----DVVSWNIMVSGYARRGDMVEARRLFDA 249
Query: 250 IPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
P + +V W ++ + +G +E RV + E
Sbjct: 250 AP--VRDVFTWTAVVSGYAQNGMLEEARRVFDAMPE 283
>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
Length = 830
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 182/310 (58%), Gaps = 5/310 (1%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
+I K G + YA +F MP RN+VSW+ +I Y + R A+ +F+ M+A +
Sbjct: 394 TTLIDCYAKLGIVSYAERVFTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDAD 453
Query: 81 -EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSA 139
P+ ITI++V A + +++H Y +RGF+ + V N L+ Y KCGC+ +
Sbjct: 454 LVPNSITIVSVLHACAGVNALGQGKVLHAYILRRGFDLL-VSVLNALMAMYMKCGCLETG 512
Query: 140 LKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS 199
+F I R+N+VSW S+ISG+ MHG G+E+++ FE M + + PN +TF+SVL ACS
Sbjct: 513 RYIFNWIG-RRRNVVSWNSLISGYGMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACS 571
Query: 200 HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVV 259
H GLVE+G K F+ MVE V P +HY C++D+LGRAGRL++A ++ + + + V
Sbjct: 572 HVGLVEQGKKLFESMVEY-NVTPRAEHYACMVDLLGRAGRLDEAVELIQSMRIQ-PSPQV 629
Query: 260 WRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319
W +LLGAC HG+VE E + ++E G+YVL+ +I A + L+ +++E
Sbjct: 630 WGSLLGACRIHGHVEYAEMACSHLFDLEPRNAGNYVLLADIYARAKLQNQVDVLKELLEE 689
Query: 320 RNALKFPGRS 329
K PG S
Sbjct: 690 HALEKVPGCS 699
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 139/334 (41%), Gaps = 49/334 (14%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM-------V 75
+I L AR +F+E P +N+ W ++ + AL M
Sbjct: 290 LIEAYAALSALPAARQVFDEAPVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVD 349
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
+ Y + I A + + VR +H + +RG+ H HV+ LID YAK G
Sbjct: 350 SYSYAHGLKACIAASASHLPASARVRE---MHAHAIRRGYG-LHTHVATTLIDCYAKLGI 405
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM--QKVVLKPNRVTFLS 193
+ A ++F S+ +NLVSW+++I +A + +A++ F+ M L PN +T +S
Sbjct: 406 VSYAERVF--TSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITIVS 463
Query: 194 VLNACS-----------HGGLVEEG-------LKFFDKMVEECEVLP------------- 222
VL+AC+ H ++ G L M +C L
Sbjct: 464 VLHACAGVNALGQGKVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWIGRRR 523
Query: 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE--ITNVVVWRTLLGACSFHGNVEMGERVT 280
++ + LI G G ++ +V + E N++ + ++LGACS G VE G+++
Sbjct: 524 NVVSWNSLISGYGMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACSHVGLVEQGKKLF 583
Query: 281 RKILEME-RGYGGDYVLMYNILAGVWRYGDAERL 313
++E Y M ++L R +A L
Sbjct: 584 ESMVEYNVTPRAEHYACMVDLLGRAGRLDEAVEL 617
>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 115/327 (35%), Positives = 193/327 (59%), Gaps = 9/327 (2%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+ F E P +N+V WN MI V+ LE + LF+ MP R+VVSW +I G+ R+ +
Sbjct: 248 RFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQE 307
Query: 67 ALALFRRMVACEYT--EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
AL F M E++ P+ +T+L+ A +G + IH Y +K N + +
Sbjct: 308 ALTWFHEM---EFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNR-DGSLDS 363
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LID Y+KCG I A+++FE+ + R++L +WTSI+ G AMHG G++A+ F +M++ +
Sbjct: 364 SLIDMYSKCGDIDKAVQIFEEST--RRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQV 421
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
+P+ VT + VL+AC+H GL+++G +F M + ++P ++HYGC++D+LGR G L++A
Sbjct: 422 QPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGCMVDLLGRMGCLKEAY 481
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+ G+P E N ++W L AC H NVE+GE R++L ++ V++ N+ A
Sbjct: 482 DLIMGMPME-ANEIIWGAFLSACRVHNNVELGEVAARRLLGLDPRDPWARVMLSNMYAEE 540
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
++ + LR+ + ++ K PG S +
Sbjct: 541 AKWDRSMGLRKEIKKKGLKKSPGCSSI 567
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 137/312 (43%), Gaps = 40/312 (12%)
Query: 28 VKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITI 87
V G + R +F+EM +V WT II Y + AL LFR M T P + I
Sbjct: 137 VACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLT-PDMVAI 195
Query: 88 LAVFPAIWQNGDVRNCQLIHGYGEKRGF--NAFHIHVSNCLIDTYAKCGCIFSALKLFED 145
V A GD+ + +H + EK G +AF VS+ LI TY +CG + A + F++
Sbjct: 196 STVVSACGLLGDLGVAKAMHCFIEKSGIEVDAF---VSSTLISTYGECGSLDYAYRFFQE 252
Query: 146 I--------------SVERKNL---------------VSWTSIISGFAMHGMGKEAVENF 176
SVE NL VSW S+I GFA G +EA+ F
Sbjct: 253 TPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWF 312
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
M+ + PN +T LS L+AC+ G ++ G + V++ ++ D LIDM +
Sbjct: 313 HEMEFSGVSPNALTLLSTLSACASHGALDTG-AWIHAYVDKNDMNRDGSLDSSLIDMYSK 371
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
G +++A ++ S ++ W +++ + HG E K+ E + D V
Sbjct: 372 CGDIDKAVQIFE--ESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQ--VQPDDVT 427
Query: 297 MYNILAGVWRYG 308
M +L+ G
Sbjct: 428 MVGVLSACAHAG 439
>gi|334183024|ref|NP_174678.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806500|sp|Q9FX24.2|PPR71_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g34160
gi|332193557|gb|AEE31678.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 581
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 123/331 (37%), Positives = 197/331 (59%), Gaps = 17/331 (5%)
Query: 7 KLFDELPERNLVTWNVMITGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
+L ++ R L +++ T L+ K G+L A LF+EMP R+V SW +I G N
Sbjct: 130 QLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLFDEMPVRDVASWNALIAGLVSGN 189
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQ-LIHGYGEKRGFNAFHIH 121
R++ A+ L++RM E SE+T++A A GDV+ + + HGY ++
Sbjct: 190 RASEAMELYKRM-ETEGIRRSEVTVVAALGACSHLGDVKEGENIFHGYSND------NVI 242
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VSN ID Y+KCG + A ++FE + +K++V+W ++I+GFA+HG A+E F++++
Sbjct: 243 VSNAAIDMYSKCGFVDKAYQVFEQFT-GKKSVVTWNTMITGFAVHGEAHRALEIFDKLED 301
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECE-VLPDIKHYGCLIDMLGRAGRL 240
+KP+ V++L+ L AC H GLVE GL F+ M C+ V ++KHYGC++D+L RAGRL
Sbjct: 302 NGIKPDDVSYLAALTACRHAGLVEYGLSVFNNMA--CKGVERNMKHYGCVVDLLSRAGRL 359
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
+A + + S I + V+W++LLGA + +VEM E +R+I EM GD+VL+ N+
Sbjct: 360 REAHDIICSM-SMIPDPVLWQSLLGASEIYSDVEMAEIASREIKEMGVNNDGDFVLLSNV 418
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ D R+R ++ + K PG S +
Sbjct: 419 YAAQGRWKDVGRVRDDMESKQVKKIPGLSYI 449
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 127/268 (47%), Gaps = 24/268 (8%)
Query: 26 GLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPS-- 83
+ +G+L +A +F +P W II G+ + + A + +R M+ + +
Sbjct: 46 AISPFGDLSFAVQIFRYIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAIC 105
Query: 84 -------EITILAVFPAIWQNG-DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
T+ A A+ + D +CQ+ +RG +A + + L+D Y+K G
Sbjct: 106 RVDALTCSFTLKACARALCSSAMDQLHCQI-----NRRGLSADSL-LCTTLLDAYSKNGD 159
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ SA KLF+++ V +++ SW ++I+G EA+E ++RM+ ++ + VT ++ L
Sbjct: 160 LISAYKLFDEMPV--RDVASWNALIAGLVSGNRASEAMELYKRMETEGIRRSEVTVVAAL 217
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
ACSH G V+EG F + ++ + IDM + G +++A +V +
Sbjct: 218 GACSHLGDVKEGENIFHGYSNDNVIVSN-----AAIDMYSKCGFVDKAYQVFEQFTGK-K 271
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKI 283
+VV W T++ + HG + K+
Sbjct: 272 SVVTWNTMITGFAVHGEAHRALEIFDKL 299
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC-RNVVSWTGIIDGYTR 60
+K+G +F N++ N I K G ++ A +FE+ ++VV+W +I G+
Sbjct: 226 VKEGENIFHGYSNDNVIVSNAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGFAV 285
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNG 98
++ AL +F ++ +P +++ LA A G
Sbjct: 286 HGEAHRALEIFDKLED-NGIKPDDVSYLAALTACRHAG 322
>gi|326532850|dbj|BAJ89270.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 177/314 (56%), Gaps = 12/314 (3%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVAC--- 77
++ K EL AR +F+EM R+V SW ++ G + + ALALF R+V
Sbjct: 143 TTLLDSYAKCDELASARKVFDEMTVRDVASWNALLAGLAQGTEPSLALALFHRLVRSFQE 202
Query: 78 --EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
P+ +TI+A A Q G +++ +H + K G ++ V N LID Y+KCG
Sbjct: 203 LPPREAPNVVTIIAALSACAQIGSLQDGLCVHEFARKIGVGG-NVRVCNALIDMYSKCGS 261
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ AL++F I E + LVS+ + I +MHG G +A++ F+ M + +P+ VT+++VL
Sbjct: 262 LARALEVFHSIKREDRTLVSYNTAIQAISMHGHGGDALKLFDEMPTCI-EPDEVTYIAVL 320
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
C+H GLV+EGL+ F M V P++KHYG ++D+LGRAGRL +A +P
Sbjct: 321 CGCNHAGLVDEGLRVFHGM----RVPPNVKHYGTVVDLLGRAGRLAEAYDTIKSMPFP-A 375
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
++V+W+TLLGA HG+VE+ E K+ E+ GDYVL+ N+ A R+ D R+R
Sbjct: 376 DIVLWQTLLGASKTHGDVELAEVAATKLTELGSNVDGDYVLLSNVYASKARWADVGRVRD 435
Query: 316 VVDERNALKFPGRS 329
+ + K PG S
Sbjct: 436 TMRSNDVRKVPGFS 449
>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
Length = 648
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 117/328 (35%), Positives = 195/328 (59%), Gaps = 10/328 (3%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD + +WN MI G +K G ++ A+ LF MP ++ VSWT +I G + ++S+
Sbjct: 322 RLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSE 381
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL +F M A + +P E+T+++V A + + +H Y + + I + L
Sbjct: 382 ALTIFNNMQA-QGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVI-LGTSL 439
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV-VLK 185
ID Y KCGC+ SAL++F+ ++E + W ++I G AM+G+ ++++ F M+
Sbjct: 440 IDMYMKCGCLESALEVFD--TMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTAT 497
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN +TF VL+AC H GLVEEG FF M + ++P+I+HYGC++D+LGRAG +++AE
Sbjct: 498 PNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAEN 557
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA--G 303
+ +P +V W LLG+C HG+ E+GERV RK++ ++ + G + ++ NI A G
Sbjct: 558 LIESMPMS-PDVPAWGALLGSCWKHGDNEVGERVGRKLVNLDPHHDGFHTMLSNIYASEG 616
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
+W++ + LR + + + K PG S+V
Sbjct: 617 MWQH--VKDLRGSMKQWHVPKIPGSSVV 642
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 123/268 (45%), Gaps = 32/268 (11%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+F +PER + M++ + G ++ AR +F+ + ++V +WT +I + R + A
Sbjct: 191 VFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDGVERKDVFTWTAMISCFQRNGKFAEA 250
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
LALF M E E ++ V A + RN ++ HG + G + ++V N LI
Sbjct: 251 LALFSDMRG-EGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGS-RLNVQNALI 308
Query: 128 DTYAKCGCIFSALKLFED-----------------------------ISVERKNLVSWTS 158
Y+ + +A +LF+ + K+ VSWT+
Sbjct: 309 HMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTT 368
Query: 159 IISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEEC 218
+ISG + EA+ F MQ +KP+ VT +SV++AC++ +E+G K + + E
Sbjct: 369 MISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQG-KSMHEYIREH 427
Query: 219 EVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ + LIDM + G LE A +V
Sbjct: 428 QYTITVILGTSLIDMYMKCGCLESALEV 455
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 16/150 (10%)
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 165
+H + + GF +++++N L+ Y+ CGC+ A K+F+ V + VSW +I++ +
Sbjct: 125 VHCHAVRHGFGR-NLYLANALMSMYSACGCLGDARKVFDAGPV--WDAVSWNTILAAYVQ 181
Query: 166 HGMGKEAVENFERMQKVVLKPNR--VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD 223
+AV F RM P R S+++ G+V+E K FD + + D
Sbjct: 182 AEDVDQAVGVFARM------PERGAAAVSSMVSLFGRRGMVDEARKVFDGVERK-----D 230
Query: 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+ + +I R G+ +A + S + E
Sbjct: 231 VFTWTAMISCFQRNGKFAEALALFSDMRGE 260
>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 117/318 (36%), Positives = 180/318 (56%), Gaps = 5/318 (1%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E N+ ++ + AR +F+E+P RN+VSW +I GY + +FR
Sbjct: 174 ESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFRE 233
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M +P E+T++ V A G + + I Y + ++ V LID YAKC
Sbjct: 234 MQIAG-AKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLR-LNVFVGTALIDMYAKC 291
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + A K+F+ + V KN+ +W +ISG+AM+G G+ A++ F RM KP+ VTFL
Sbjct: 292 GVVDEAEKIFKAMRV--KNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLG 349
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VL AC H GLV EG +F M EE + P I+HYGC++D+LGRAG L++A+++ + +
Sbjct: 350 VLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQ 409
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
+ ++WR LLGAC HGN+++GE +K+LE+E G +YVL+ N+ A R+ +
Sbjct: 410 -PDPIIWRELLGACRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEV 468
Query: 314 RRVVDERNALKFPGRSLV 331
R ++D R K PG S +
Sbjct: 469 REMMDCRRVRKVPGCSSI 486
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 17/187 (9%)
Query: 10 DELPERNLVTWNVMI-TGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
D+ + N + NV + T L+ K G ++ A +F+ M +NV +W +I GY R
Sbjct: 266 DDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRG 325
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQ-LIHGYGEKRGFNAFHIHVS 123
AL F RM+ E +P E+T L V A G V + E+ G I
Sbjct: 326 ESALQAFSRMIM-EKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRP-RIEHY 383
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKEAVENFERMQ 180
C++D + G + A +L + +S++ ++ W ++ +HG +G+ A++
Sbjct: 384 GCMVDLLGRAGFLDEAQQLIQAMSMQPDPII-WRELLGACRIHGNIQLGEFAIKKL---- 438
Query: 181 KVVLKPN 187
+ L+PN
Sbjct: 439 -LELEPN 444
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 119/321 (37%), Positives = 193/321 (60%), Gaps = 9/321 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ NL N +I K GE+E A LF+ + ++V+SW +I GYT MN AL LF+
Sbjct: 228 DSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQE 287
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR---GFNAFHIHVSNCLIDTY 130
M+ T P+++T+L+V PA G + + IH Y +KR NA + S LID Y
Sbjct: 288 MLRSGET-PNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTS--LIDMY 344
Query: 131 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVT 190
AKCG I +A ++F S+ K+L SW ++I GFAMHG + + F RM+K+ ++P+ +T
Sbjct: 345 AKCGDIEAAHQVFN--SMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDIT 402
Query: 191 FLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI 250
F+ +L+ACSH G+++ G F M ++ ++ P ++HYGC+ID+LG +G ++AE++ + +
Sbjct: 403 FVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTM 462
Query: 251 PSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDA 310
E + V+W +LL AC HGNVE+ E + ++++E Y+L+ NI A R+ D
Sbjct: 463 EME-PDGVIWCSLLKACKMHGNVELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDV 521
Query: 311 ERLRRVVDERNALKFPGRSLV 331
R+R +++ + K PG S +
Sbjct: 522 ARIRALLNGKCMKKVPGCSSI 542
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 148/276 (53%), Gaps = 11/276 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+D K+FD R++V++ +ITG G++ A+ LF+E+P ++VVSW +I GY
Sbjct: 115 LEDAYKVFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAET 174
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL LF M+ P E T + V A +G + + +H + + GF++ ++
Sbjct: 175 GCYKEALELFEEMMKMN-VRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDS-NLK 232
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N LID Y+KCG + +A LF+ +S K+++SW ++I G+ + KEA+ F+ M +
Sbjct: 233 IVNALIDLYSKCGEVETACGLFQGLSY--KDVISWNTLIGGYTHMNLYKEALLLFQEMLR 290
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEG---LKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
PN VT LSVL AC+H G ++ G + DK ++ ++ LIDM + G
Sbjct: 291 SGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLR--TSLIDMYAKCG 348
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
+E A +V + + + ++ W ++ + HG +
Sbjct: 349 DIEAAHQVFNSMLHK--SLSSWNAMIFGFAMHGRAD 382
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 5/145 (3%)
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198
A +FE +++ N + W ++I G A+ ++ + M + L PN TF +L +C
Sbjct: 17 ATSVFE--TIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSC 74
Query: 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
+ EG + ++++ L D+ + LI M + RLE A KV S +VV
Sbjct: 75 AKSKTFTEGQQIHGQVLKLGFDL-DLYVHTSLISMYVQNWRLEDAYKVFD--RSSHRDVV 131
Query: 259 VWRTLLGACSFHGNVEMGERVTRKI 283
+ L+ + G++ +++ +I
Sbjct: 132 SYTALITGYASRGDIRSAQKLFDEI 156
>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 194/331 (58%), Gaps = 5/331 (1%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
F + K+FD + ++V WN MI G+ K G ++ +R LF++M RN VSW +I GY R
Sbjct: 172 FTSEARKVFDRGMDFDIVAWNTMIMGVAKCGLVDESRRLFDKMSLRNAVSWNSMISGYVR 231
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
R AL LF++M E EPSE T++++ A G +R + IH Y K+ F I
Sbjct: 232 NGRFFDALELFQKM-QVERIEPSEFTMVSLLNACACLGAIRQGEWIHDYMVKKKFELNPI 290
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V+ +ID Y+KCG I A+++F+ S R+ L W S+I G AM+G EA++ F +Q
Sbjct: 291 VVT-AIIDMYSKCGSIDKAVQVFQ--SAPRRGLSCWNSMILGLAMNGQENEALQLFSVLQ 347
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
L+P+ V+F++VL AC H G+V++ +F M ++ ++ P IKH+ C++D+LGRAG L
Sbjct: 348 SSDLRPDDVSFIAVLTACDHTGMVDKAKDYFLLMRDKYKIKPGIKHFSCMVDVLGRAGLL 407
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+AE++ + + + ++W +LL +C +GN++M +R ++E+ +VL+ N
Sbjct: 408 EEAEELIRSMHVD-PDAIIWGSLLWSCCKYGNIKMAKRAANHLIELNPSESSSFVLVANA 466
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + +A + R + E + K PG S +
Sbjct: 467 YAAANNFEEALKERLTLKENHIGKEPGCSCI 497
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 128/273 (46%), Gaps = 37/273 (13%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G++ YA +F ++ N+ +W II G++R + +++L+ M+ +P +T +V
Sbjct: 69 GDINYAYLVFVQIQNPNIFAWNTIIRGFSRSSVPQNSISLYIDMLLTSPVQPQRLTYPSV 128
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFN------------------------------AFHI 120
F A Q +HG K G F I
Sbjct: 129 FKAFAQLDLASEGAQLHGKMIKLGLENDSFIRNTILFMYVNCGFTSEARKVFDRGMDFDI 188
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
N +I AKCG + + +LF+ +S+ +N VSW S+ISG+ +G +A+E F++MQ
Sbjct: 189 VAWNTMIMGVAKCGLVDESRRLFDKMSL--RNAVSWNSMISGYVRNGRFFDALELFQKMQ 246
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV-EECEVLPDIKHYGCLIDMLGRAGR 239
++P+ T +S+LNAC+ G + +G D MV ++ E+ P + +IDM + G
Sbjct: 247 VERIEPSEFTMVSLLNACACLGAIRQGEWIHDYMVKKKFELNPIV--VTAIIDMYSKCGS 304
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
+++A +V P + W +++ + +G
Sbjct: 305 IDKAVQVFQSAPRR--GLSCWNSMILGLAMNGQ 335
>gi|334187520|ref|NP_001190262.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
gi|223635618|sp|P0C8Q7.1|PP369_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08305
gi|332003897|gb|AED91280.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
Length = 534
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 114/325 (35%), Positives = 189/325 (58%), Gaps = 3/325 (0%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
KLFDE+P +NLVTWN ++ K G++ AR +F+EM R+VV+W+ +IDGY + N
Sbjct: 164 KLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNK 223
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL +F +M+ ++ +E+T+++V A G + + +H Y + + L
Sbjct: 224 ALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHL-PLTVILQTSL 282
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YAKCG I A +F SV+ + + W +II G A HG +E+++ F +M++ + P
Sbjct: 283 IDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDP 342
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +TFL +L ACSHGGLV+E FF K ++E P +HY C++D+L RAG ++ A
Sbjct: 343 DEITFLCLLAACSHGGLVKEAWHFF-KSLKESGAEPKSEHYACMVDVLSRAGLVKDAHDF 401
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
S +P + T ++ LL C HGN+E+ E V +K++E++ G YV + N+ A +
Sbjct: 402 ISEMPIKPTGSML-GALLNGCINHGNLELAETVGKKLIELQPHNDGRYVGLANVYAINKQ 460
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ A +R ++++ K G S++
Sbjct: 461 FRAARSMREAMEKKGVKKIAGHSIL 485
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 137/307 (44%), Gaps = 43/307 (14%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E V+ + + L G+++YA ++ W +I G++ +++++ +
Sbjct: 39 EEPFVSQTLSFSALSSSGDVDYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQ 98
Query: 74 MVACEYTEPSEITILAVFPAIWQN---------GDVRNCQ---------------LIHGY 109
M+ P +T +P + ++ G +C LIH Y
Sbjct: 99 MLRFGLL-PDHMT----YPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMY 153
Query: 110 GEKRG-------FNAF---HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 159
G R F+ ++ N ++D YAK G + SA +F+++S +++V+W+S+
Sbjct: 154 GSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMS--ERDVVTWSSM 211
Query: 160 ISGFAMHGMGKEAVENFERMQKV-VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEEC 218
I G+ G +A+E F++M ++ K N VT +SV+ AC+H G + G K + + +
Sbjct: 212 IDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRG-KTVHRYILDV 270
Query: 219 EVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGER 278
+ + LIDM + G + A V + T+ ++W ++G + HG + +
Sbjct: 271 HLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQ 330
Query: 279 VTRKILE 285
+ K+ E
Sbjct: 331 LFHKMRE 337
>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 193/340 (56%), Gaps = 15/340 (4%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
LK LFDE+P+ N+V WN ++ G V+ G+ + AR +F+EMP RNV +WT ++ G+ +
Sbjct: 181 LKRARYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQN 240
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ AL+LF +M E ++ ++A A + GD+ + IHGY E R + + H+
Sbjct: 241 GQCKLALSLFDQMRRAG-VELDQVALVAALSACAELGDLTLGKWIHGYVE-RTWRSRHLP 298
Query: 122 V----SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
V +N LI YA CG + A K+FE+I ++N VSW+SII+GFA G G EA+ F+
Sbjct: 299 VLVSLNNALIHMYASCGVMDLAYKVFEEI--PQRNTVSWSSIITGFAKQGCGVEAIRIFQ 356
Query: 178 RM---QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDML 234
M + ++P+ +TF+ L ACSH GL+ +G++ F M + V+P I+HYGC++D+L
Sbjct: 357 LMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSMHKTFGVIPQIEHYGCMVDLL 416
Query: 235 GRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI---LEMERGYG 291
RAG L +A + +P + N VW LL C H N E+ V + + +
Sbjct: 417 SRAGLLTEALSLIESMPMKPNN-AVWGALLSGCRLHKNDEIVSHVAKHLSFEIHPNNQAA 475
Query: 292 GDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
G ++L+ N+ A R+ D +RR + + K GRS +
Sbjct: 476 GYFMLLANVYAADGRWQDTATVRRNMHDIGVKKPSGRSWI 515
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 126/290 (43%), Gaps = 45/290 (15%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV----- 75
N +++ + +G L A+ +FE++ + W II G+TR S ++ LF+RM
Sbjct: 63 NHLLSLYISFGSLGSAQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVE 122
Query: 76 -----------ACE----YTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
AC + E +I + W N VR LI+ Y F +
Sbjct: 123 ANGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRT-NLINLYANGGDGGDFDL 181
Query: 121 HVS---------------NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 165
+ N L+ Y + G A K+F+++ +N+ +WT +++GFA
Sbjct: 182 KRARYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEM--PERNVRTWTIMVAGFAQ 239
Query: 166 HGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEEC---EVLP 222
+G K A+ F++M++ ++ ++V ++ L+AC+ G + G K+ VE LP
Sbjct: 240 NGQCKLALSLFDQMRRAGVELDQVALVAALSACAELGDLTLG-KWIHGYVERTWRSRHLP 298
Query: 223 D-IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ LI M G ++ A KV IP N V W +++ + G
Sbjct: 299 VLVSLNNALIHMYASCGVMDLAYKVFEEIPQR--NTVSWSSIITGFAKQG 346
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 11/190 (5%)
Query: 101 RNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 160
RN IH GF+ + ++ N L+ Y G + SA K+FEDI+ + W II
Sbjct: 41 RNLAKIHAQIVVSGFSQKN-YILNHLLSLYISFGSLGSAQKVFEDITAPSTTV--WNQII 97
Query: 161 SGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEV 220
G K+++E F+RM ++ N T+ +L+AC L EG + +++
Sbjct: 98 KGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRVLVN-GY 156
Query: 221 LPDIKHYGCLIDMLGRAG-----RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEM 275
++ LI++ G L++A + +P +NVV W +LL G+ +
Sbjct: 157 WSNLYVRTNLINLYANGGDGGDFDLKRARYLFDEMPD--SNVVGWNSLLAGYVRRGDFDG 214
Query: 276 GERVTRKILE 285
+V ++ E
Sbjct: 215 ARKVFDEMPE 224
>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
Length = 630
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 186/332 (56%), Gaps = 7/332 (2%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
+ + +LF+ +P RN+ +WN M+TG + G LE A+++F+ MP ++ VSW ++ Y++
Sbjct: 176 MMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQ 235
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQL-IHGYGEKRGFNAFH 119
S L LF M C E + A + + C + +HG + G+
Sbjct: 236 GGCSEETLQLFIEMGRC--GEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGY-GVG 292
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
V N L+ Y KCG + A FE++ E +++VSW ++I+G+A HG GKEA+E F+ M
Sbjct: 293 CFVGNALLAMYFKCGNMEDARNAFEEM--EERDVVSWNTMIAGYARHGFGKEALEIFDMM 350
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+ KP+ +T + VL ACSH GLVE+G+ +F M + V +HY C+ID+LGRAGR
Sbjct: 351 RTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGR 410
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
L +A + +P E + +W LLGA H N E+G KI E+E G YVL+ N
Sbjct: 411 LAEAHDLMKDMPFE-PDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSN 469
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
I A ++ DA ++R +++ER K PG S +
Sbjct: 470 IYASSGKWRDARKMRVMMEERGVKKVPGFSWI 501
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 135/285 (47%), Gaps = 45/285 (15%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + +LFD +P R++V+WN+M++G + G++ AR LF+ P R+V +WT ++ GY +
Sbjct: 84 MSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQ- 142
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG------- 114
NG L RR VF A+ + V ++ Y ++R
Sbjct: 143 ---NGMLEEARR----------------VFDAMPERNAVSWNAMVAAYIQRRMMDEAKEL 183
Query: 115 FNAF---HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKE 171
FN ++ N ++ YA+ G + A +F+ ++ +K+ VSW ++++ ++ G +E
Sbjct: 184 FNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFD--TMPQKDAVSWAAMLAAYSQGGCSEE 241
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC-- 229
++ F M + NR F VL+ C+ +E G++ +++ + GC
Sbjct: 242 TLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV------GCFV 295
Query: 230 ---LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
L+ M + G +E A + E +VV W T++ + HG
Sbjct: 296 GNALLAMYFKCGNMEDARNAFEEM--EERDVVSWNTMIAGYARHG 338
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 133/277 (48%), Gaps = 26/277 (9%)
Query: 12 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALF 71
+P R+ VT+NVMI+ G + AR F+ P ++ VSW G++ Y R R A LF
Sbjct: 1 MPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF 60
Query: 72 RRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYA 131
TE I+ A+ Q G + + + R +++I VS YA
Sbjct: 61 N-----SRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSG-----YA 110
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191
+ G + A +LF+ V +++ +WT+++SG+A +GM +EA F+ M + N V++
Sbjct: 111 RRGDMVEARRLFDAAPV--RDVFTWTAVVSGYAQNGMLEEARRVFDAMP----ERNAVSW 164
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
+++ A +++E + F+ M C ++ + ++ +AG LE+A+ V +P
Sbjct: 165 NAMVAAYIQRRMMDEAKELFNMM--PCR---NVASWNTMLTGYAQAGMLEEAKAVFDTMP 219
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
+ + V W +L A S G E + +EM R
Sbjct: 220 QK--DAVSWAAMLAAYSQGG---CSEETLQLFIEMGR 251
>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
Length = 1145
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 116/325 (35%), Positives = 192/325 (59%), Gaps = 14/325 (4%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FD + ++ V++N ++ LV+ + AR +F MP +VVSWT II + ++ N
Sbjct: 474 QIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNE 533
Query: 67 ALALFRRMV-ACEYTEPSEITILAVFPAIWQNGDVRNCQL---IHGYGEKRGFNAFHIHV 122
A+ +FR M+ E P +TIL + +G++ QL IH K G ++ + V
Sbjct: 534 AVEIFRSMLHERELPNPPILTIL-----LGLSGNLGAPQLGQQIHTIAIKLGMDSGLV-V 587
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
+N L+ Y KC S LK+F+ S+E +++ +W +II+G+A HG+G+EA+ ++ M
Sbjct: 588 ANALVSMYFKCSSADS-LKVFD--SMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSA 644
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
+ PN VTF+ +L+ACSH GLV+EG +FF M + + P ++HY C++D+LGRAG ++
Sbjct: 645 GVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQG 704
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302
AE +P E + V+W LLGAC H NVE+G R K+ +E G+YV++ NI +
Sbjct: 705 AEHFIYDMPIE-PDSVIWSALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYS 763
Query: 303 GVWRYGDAERLRRVVDERNALKFPG 327
+ + ++R+++ ER K PG
Sbjct: 764 SQGMWDEVAKVRKLMKERGVNKDPG 788
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 136/271 (50%), Gaps = 16/271 (5%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
KLFD +P R++ +WN M+TG +E AR+LFE MP RN VSWT +I GY + +
Sbjct: 147 KLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGR 206
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A +FR M+ CE P + +++V A+ G + IH K GF + V +
Sbjct: 207 AWDMFRTML-CEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFER-DVVVGTAI 264
Query: 127 IDTYAK-CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
++ Y K + SA+K FE ++ +N +W++II+ + G +A ++R +
Sbjct: 265 LNGYTKDVNMLDSAVKFFEGMAA--RNEYTWSTIIAALSQAGRIDDAFAVYQR-DPLKSV 321
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
P+R + L+ L + G +++ FD++ E P++ + +I + +++AE
Sbjct: 322 PSRTSMLTGL---ARYGRIDDAKILFDQIHE-----PNVVSWNAMITGYMQNEMVDEAED 373
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMG 276
+ + +P N + W ++ + +G E
Sbjct: 374 LFNRMP--FRNTISWAGMIAGYARNGRSEQA 402
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 124/249 (49%), Gaps = 17/249 (6%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ D LFD++ E N+V+WN MITG ++ ++ A LF MP RN +SW G+I GY R
Sbjct: 337 IDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARN 396
Query: 62 NRSNGAL----ALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
RS AL AL R+ + + ++ + F A + + +H K G
Sbjct: 397 GRSEQALVSLQALHRKGMLPSLS-----SLTSSFFACSNIEALETGKQVHSLAVKAGCQ- 450
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
F+ +V N LI Y K I S ++F+ ++V K+ VS+ S +S + + EA + F
Sbjct: 451 FNSYVCNALITLYGKYRSIGSVRQIFDRMTV--KDTVSYNSFMSALVQNNLFDEARDVFN 508
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
M P+ V++ ++++AC+ E ++ F M+ E E LP+ L+ + G
Sbjct: 509 NMP----SPDVVSWTTIISACAQADQGNEAVEIFRSMLHERE-LPNPPILTILLGLSGNL 563
Query: 238 GRLEQAEKV 246
G + +++
Sbjct: 564 GAPQLGQQI 572
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 134/330 (40%), Gaps = 29/330 (8%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + ++FD +P R+++ WN MI G + RSL + + N+ + T ++ GY R
Sbjct: 49 LHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLRTGTILLSGYARA 108
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R A +F M + + A+ QNGD+ + + R +++
Sbjct: 109 GRVRDARRVFDGMGV-----RNTVAWNAMVTCYVQNGDITLARKLFDAMPSRDVSSW--- 160
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
N ++ Y + A LFE + +N VSWT +ISG+ + A + F M
Sbjct: 161 --NTMLTGYCHSQLMEEARNLFE--RMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLC 216
Query: 182 VVLKPNRVTFLSVLNACSH---GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
+ P + +SVL+A H G++E K E +V + L
Sbjct: 217 EGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDV---VVGTAILNGYTKDVN 273
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMY 298
L+ A K G+ + N W T++ A S G R+ +R
Sbjct: 274 MLDSAVKFFEGMAAR--NEYTWSTIIAALSQAG------RIDDAFAVYQRDPLKSVPSRT 325
Query: 299 NILAGVWRYG---DAERLRRVVDERNALKF 325
++L G+ RYG DA+ L + E N + +
Sbjct: 326 SMLTGLARYGRIDDAKILFDQIHEPNVVSW 355
>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
Length = 797
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 111/332 (33%), Positives = 192/332 (57%), Gaps = 15/332 (4%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
++F+++PER+LV+WN++++G V ++ A+S F EMP +N++SW +I G ++ +
Sbjct: 347 AQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFA 406
Query: 65 NGALALFRRMV-----ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
AL F RM C+Y I +V G +++ + +H + G+ +
Sbjct: 407 EEALKFFNRMKLQGFEPCDYAFAGAIISCSVL------GSLKHGRQLHAQVVRYGYES-S 459
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+ N LI YA+CG + +A LF I++ + +SW ++I+ HG G +A+E FE M
Sbjct: 460 LSAGNALITMYARCGVVDAAHCLF--INMPCVDAISWNAMIAALGQHGQGTQAIELFEEM 517
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
K + P+R++FL+V++ACSH GLV+EG K+FD M V PD +HY +ID+L RAG+
Sbjct: 518 LKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGK 577
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
+A++V +P E +W LL C HGN+++G ++ E++ + G YVL+ N
Sbjct: 578 FSEAKEVMESMPFE-PGAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSN 636
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ A ++ D ++R+++ +R K PG S +
Sbjct: 637 MYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWI 668
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/356 (25%), Positives = 149/356 (41%), Gaps = 50/356 (14%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
+ + KLFDE+P R+ ++W +ITG VK +L+ A+ + V+W +I GY
Sbjct: 207 LMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAH 266
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA--- 117
A +FR+M+ + + E T +V G R + +H Y K N
Sbjct: 267 RGLYLEAFEMFRKMIMSK-IQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPD 325
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
+ V+N LI Y KCG + A ++F + ++LVSW I+SG+ EA F
Sbjct: 326 VAMPVNNALITFYWKCGKVDIAQEIFNKMP--ERDLVSWNIILSGYVNVRCMDEAKSFFN 383
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKM---------------VEECEVLP 222
M + N ++++ +++ + G EE LKFF++M + C VL
Sbjct: 384 EMP----EKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLG 439
Query: 223 DIKH----------YG---------CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTL 263
+KH YG LI M R G ++ A + +P + + W +
Sbjct: 440 SLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPC--VDAISWNAM 497
Query: 264 LGACSFHGNVEMGERVTRKILEM-ERGYGGDYVLMYNILAGVWRYGDAERLRRVVD 318
+ A HG G + EM + G D + +++ G + R+ D
Sbjct: 498 IAALGQHGQ---GTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFD 550
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 133/304 (43%), Gaps = 52/304 (17%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYTRMNRSN 65
LFDE+P+ ++V +I G+L+ +R +F + P R+ V + +I Y+ + +
Sbjct: 70 LFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGH 129
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDV-RNCQLIHGYGEKRGFNAFHIHVSN 124
A+ LF M + P T +V A+ + ++CQ +H K G F V N
Sbjct: 130 AAIELFCDMQRDNF-RPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSG-TGFVTSVLN 187
Query: 125 CLIDTYAKC---------GCIFSALKLFEDIS---------------------------- 147
LI +Y KC + A KLF+++
Sbjct: 188 ALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLN 247
Query: 148 -VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG---L 203
+K V+W ++ISG+A G+ EA E F +M ++ + TF SV++ C++ G L
Sbjct: 248 GTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRL 307
Query: 204 VEEGLKFFDKMVEECEVLPDIKH--YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWR 261
+E +F K V PD+ LI + G+++ A+++ + +P ++V W
Sbjct: 308 GKEMHAYFLKTV--ANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPER--DLVSWN 363
Query: 262 TLLG 265
+L
Sbjct: 364 IILS 367
>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 120/330 (36%), Positives = 190/330 (57%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ KLFD R+++TW +I G V+ G++ R LF++MP RN VSW+ +I GY R+
Sbjct: 162 MDSARKLFDLSSNRDVITWTALINGYVRAGQVLIGRELFDKMPERNSVSWSAMITGYVRV 221
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL LF M+ + P+ I+ A G + + IH Y ++ + +
Sbjct: 222 GFFEEALELFNAMLISGFW-PNHAGIVCAINACASLGALDQGRWIHCYIKRNRMDLDRV- 279
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LID YAKCGCI A +F ++ +++ +T +ISG A HG AVE FERM
Sbjct: 280 MGAALIDMYAKCGCIEIACSIFGEL--RNRDVHVYTCLISGLANHGQSATAVELFERMHS 337
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ PN VTF+SVLNACS GLV++GL+ F+ M + P ++HYGCL+D+LGRAG+LE
Sbjct: 338 EGVVPNEVTFVSVLNACSRMGLVDKGLRIFENMSKIYGDEPQVQHYGCLVDLLGRAGKLE 397
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A+K+ +P + + V+ LL A +G+VE+GE + ++ + G +V++ N+
Sbjct: 398 EAKKLVKEMPMKPDSYVLG-ALLNASRVYGDVELGEETVESLAQLSLDHSGVHVVLSNMY 456
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ + R+RR + ++ K PG SL+
Sbjct: 457 ASANKWDEVARVRRGMGDKKVRKVPGCSLI 486
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 141/352 (40%), Gaps = 70/352 (19%)
Query: 32 ELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVF 91
L +A LF + R+ W +I + N A+ LF+ M+ + P+ T +F
Sbjct: 60 SLSHAYRLFLGLRHRSTFIWNTVIRAFAEKNEPRKAIMLFKNMLYSNFL-PNNYTYSFLF 118
Query: 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER- 150
A ++ H K G+ F+ V N L+ +A GC+ SA KLF D+S R
Sbjct: 119 KACTDLNNLYLGLACHCQSIKLGWE-FYDFVQNGLVHMFAIFGCMDSARKLF-DLSSNRD 176
Query: 151 -----------------------------KNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+N VSW+++I+G+ G +EA+E F M
Sbjct: 177 VITWTALINGYVRAGQVLIGRELFDKMPERNSVSWSAMITGYVRVGFFEEALELFNAMLI 236
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEG--LKFFDK----------------MVEECEVLP- 222
PN + +NAC+ G +++G + + K M +C +
Sbjct: 237 SGFWPNHAGIVCAINACASLGALDQGRWIHCYIKRNRMDLDRVMGAALIDMYAKCGCIEI 296
Query: 223 -----------DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE--ITNVVVWRTLLGACSF 269
D+ Y CLI L G+ A ++ + SE + N V + ++L ACS
Sbjct: 297 ACSIFGELRNRDVHVYTCLISGLANHGQSATAVELFERMHSEGVVPNEVTFVSVLNACSR 356
Query: 270 HGNVEMGERVTRKILEMERGYGGD-YVLMYNILAGVW-RYGDAERLRRVVDE 319
G V+ G R+ M + YG + V Y L + R G E +++V E
Sbjct: 357 MGLVDKGLRIFE---NMSKIYGDEPQVQHYGCLVDLLGRAGKLEEAKKLVKE 405
Score = 37.4 bits (85), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 17/179 (9%)
Query: 119 HIHVSNCLIDTYAKCGCI---------FS---ALKLFEDISVERKNLVSWTSIISGFAMH 166
H+ VS L D YA I FS A +LF + + ++ W ++I FA
Sbjct: 32 HLTVSGTLKDPYAAAKIISFCALSSNQFSLSHAYRLF--LGLRHRSTFIWNTVIRAFAEK 89
Query: 167 GMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH 226
++A+ F+ M PN T+ + AC+ + GL + ++ D
Sbjct: 90 NEPRKAIMLFKNMLYSNFLPNNYTYSFLFKACTDLNNLYLGLACHCQSIKLGWEFYDFVQ 149
Query: 227 YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
G L+ M G ++ A K+ S +V+ W L+ G V +G + K+ E
Sbjct: 150 NG-LVHMFAIFGCMDSARKLFD--LSSNRDVITWTALINGYVRAGQVLIGRELFDKMPE 205
>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
Length = 865
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 108/328 (32%), Positives = 187/328 (57%), Gaps = 4/328 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ +F + E+++V+W MIT + G + AR F+ M +NV++W ++ Y +
Sbjct: 422 LQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQH 481
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
L +++ M++ EY P +T + +F G + I G K G
Sbjct: 482 GAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGL-IIDTS 540
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V+N +I Y+KCG I A K+F+ ++V K++VSW ++I+G++ HGMGK+A+E F+ + K
Sbjct: 541 VANAVITMYSKCGRILEARKVFDFLNV--KDIVSWNAMITGYSQHGMGKQAIEIFDDILK 598
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KP+ +++++VL+ CSH GLV+EG +FD M + P ++H+ C++D+LGRAG L
Sbjct: 599 RGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLT 658
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A+ + +P + T VW LL AC HGN E+ E + + E++ G Y+LM I
Sbjct: 659 EAKDLIDDMPMKPT-AEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIY 717
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRS 329
A + D+ ++R+++ ++ K PG S
Sbjct: 718 ADAGKSDDSAQIRKLMRDKGIKKNPGYS 745
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 140/319 (43%), Gaps = 48/319 (15%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
S+LF + E + N M+ G VK +++A LF+ MP R+VVSW ++ ++ R
Sbjct: 192 ASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRV 251
Query: 65 NGALALFRRMVAC-----EYTEPSEITILAVFPAI-WQNGDVRNCQLIHGYGEKRGFNAF 118
AL + M + T S +T A ++ W G + Q+I R
Sbjct: 252 REALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRW--GKQLHAQVI------RNLPHI 303
Query: 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER 178
+V++ L++ YAK GC A +F S+ +N V+WT +ISGF +G E+VE F +
Sbjct: 304 DPYVASALVELYAKSGCFKEAKGVFN--SLHDRNNVAWTVLISGFLQYGCFTESVELFNQ 361
Query: 179 MQKVVLKPNRVTFLSVLNACS-----------HGGLVEEGL-------KFFDKMVEECEV 220
M+ ++ ++ ++++ C H ++ G M +C+
Sbjct: 362 MRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDN 421
Query: 221 L------------PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
L DI + +I + G + +A + G+ + NV+ W +LGA
Sbjct: 422 LQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEK--NVITWNAMLGAYI 479
Query: 269 FHGNVEMGERVTRKILEME 287
HG E G R+ + +L E
Sbjct: 480 QHGAEEDGLRMYKVMLSEE 498
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/320 (20%), Positives = 137/320 (42%), Gaps = 49/320 (15%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
L ++ N++T NVM+ G K G L A LF MP R+V SW ++ GY + + +
Sbjct: 62 LLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVS 121
Query: 68 LALFRRMVACEYTEPSEITILAVFPAI----WQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
L F M + P+ T+ + W + ++ ++ + + V+
Sbjct: 122 LETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSE-----VA 176
Query: 124 NCLIDTYAKCGCIFSALKLFEDI-----------------------------SVERKNLV 154
L+D + +CG + A +LF I S+ +++V
Sbjct: 177 AALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVV 236
Query: 155 SWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKM 214
SW ++S + G +EA++ MQ ++ + T+ S L AC+ + G + ++
Sbjct: 237 SWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQV 296
Query: 215 VEECEVLPDIKHY--GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG- 271
+ LP I Y L+++ ++G ++A+ V + + N V W L+ +G
Sbjct: 297 IRN---LPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDR--NNVAWTVLISGFLQYGC 351
Query: 272 ---NVEMGERVTRKILEMER 288
+VE+ ++ +++ +++
Sbjct: 352 FTESVELFNQMRAELMTLDQ 371
>gi|242096286|ref|XP_002438633.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
gi|241916856|gb|EER90000.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
Length = 529
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 113/332 (34%), Positives = 192/332 (57%), Gaps = 5/332 (1%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
+L++ K+F ++PERN+++W ++++G G+L+ AR LF + ++++ WT +I+ +
Sbjct: 196 YLEEAVKMFQQMPERNIISWTILVSGYAVAGQLDKARMLFYQCTQKDLILWTAMINACVQ 255
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
AL LFR M + EP + T++ + G + + IH Y E R +
Sbjct: 256 HGSFEEALTLFRDM-QLQRVEPDKFTVVTLLTCCANIGALDQGEWIHQYAEGRNMKIDAV 314
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+ LI+ Y+KCG + +L++F ++ ++ +WT+II G A +G +A+E FE MQ
Sbjct: 315 -LGTALIEMYSKCGHVDKSLQIFG--RMQGRDAAAWTAIICGLATNGQASKALELFEEMQ 371
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ KP+ +TF+ VLNAC HGGLV+EG + F M E ++ P I+HY CL+++LG AG L
Sbjct: 372 RSKTKPDGITFIGVLNACCHGGLVDEGRRHFQAMKEIYQIEPRIEHYSCLVNLLGHAGLL 431
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY-VLMYN 299
+AEK+ +P + ++ LL AC +GNVEM ER+T++I + + D VLM N
Sbjct: 432 YEAEKLIRDMPVNNDTMPLFGALLTACKAYGNVEMSERLTKRIAKEDCSQNPDVNVLMSN 491
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ A R+ ++ R+R + K G S++
Sbjct: 492 VYATASRWEESIRVRSKMTHPAVKKTAGCSMI 523
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 107/214 (50%), Gaps = 10/214 (4%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G +++AR +F+EMP R +V W ++ Y R R A+AL M T P +T++
Sbjct: 95 GRVDFARKVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVALAEEMERSGAT-PDRVTLVTA 153
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A + GD+ + I Y + G F + V+N L+D Y K G + A+K+F+ +
Sbjct: 154 VTACSRAGDLSLGRRIRAYMD--GVFGFSLPVANALLDMYTKNGYLEEAVKMFQQMP--E 209
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
+N++SWT ++SG+A+ G +A F + + + + + +++NAC G EE L
Sbjct: 210 RNIISWTILVSGYAVAGQLDKARMLFYQ----CTQKDLILWTAMINACVQHGSFEEALTL 265
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
F M + V PD L+ G L+Q E
Sbjct: 266 FRDMQLQ-RVEPDKFTVVTLLTCCANIGALDQGE 298
>gi|242041125|ref|XP_002467957.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
gi|241921811|gb|EER94955.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
Length = 650
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 186/303 (61%), Gaps = 8/303 (2%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD + +WN MI+G +K G +E A++LF MP ++ VSW+ +I G + N+S+
Sbjct: 325 RLFDSSESLDHFSWNSMISGYLKNGRVEDAKALFNVMPDKDNVSWSAMIAGCVQNNQSSE 384
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL +F M A E +P E+T+++V A + +L+H Y + +N I + L
Sbjct: 385 ALTVFDNMRAHE-IKPDEVTLVSVISACTNLCALEQGKLVHEYIRQYQYN-ITIVLGTSL 442
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV-VLK 185
ID Y KCGC+ +AL++F+ VE K W ++I G AM+G+ +++ F M+ +
Sbjct: 443 IDMYMKCGCMEAALEVFD--MVEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMETSGIAV 500
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
P+ +TF VL+AC HGGLVEEG +FF M + +++P+I+HYGC++D+LGRAG + +AE
Sbjct: 501 PSEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIIPNIRHYGCMVDLLGRAGYVREAED 560
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA--G 303
+ +P +V W LLGAC H + E+GERV +K+++++ + G ++ NI A G
Sbjct: 561 LIQSMPMS-PDVPAWGALLGACWKHSDSEVGERVGKKLVKLDPHHDGFQTMLSNIYASEG 619
Query: 304 VWR 306
+W+
Sbjct: 620 MWQ 622
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 133/280 (47%), Gaps = 37/280 (13%)
Query: 1 FLKDGS-----KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGII 55
+++DG +F +PER+ + M+ + G +E AR +F+ R+ +WT +I
Sbjct: 182 YVRDGDVEQAVGVFARMPERSAAAVSSMVALFARTGMVEEARGVFDGAEHRDAFTWTAMI 241
Query: 56 DGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF 115
+ R + ALA+F M E E +++V A ++ ++N ++ HG + G
Sbjct: 242 SCFERNDLFVEALAVFSDMRE-EGWPVDEAVMVSVVAACAKSEVIQNGEVCHGLVVRAGL 300
Query: 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFED------------IS---------------- 147
+ ++V N LI Y+ C + +A +LF+ IS
Sbjct: 301 GS-RVNVQNALIHMYSSCLDVVAARRLFDSSESLDHFSWNSMISGYLKNGRVEDAKALFN 359
Query: 148 -VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEE 206
+ K+ VSW+++I+G + EA+ F+ M+ +KP+ VT +SV++AC++ +E+
Sbjct: 360 VMPDKDNVSWSAMIAGCVQNNQSSEALTVFDNMRAHEIKPDEVTLVSVISACTNLCALEQ 419
Query: 207 GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
G K + + + + I LIDM + G +E A +V
Sbjct: 420 G-KLVHEYIRQYQYNITIVLGTSLIDMYMKCGCMEAALEV 458
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 15/182 (8%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
L ++ LF + N + +I R + L+ M A P T +
Sbjct: 59 LHHSLQLFRLVRSPNAFTCNTLIRAALRQGLPHLCFPLYASMPAA----PDTYTHPLLAA 114
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
A GD R + +H + K GF ++++ N L+ Y+ CGC+ A ++F+ V +
Sbjct: 115 ACAARGDAREGRQVHSHAVKHGFGD-NLYLRNALMHMYSACGCVAGARRVFDAGPV--WD 171
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR--VTFLSVLNACSHGGLVEEGLKF 210
VSW +I++ + G ++AV F RM P R S++ + G+VEE
Sbjct: 172 AVSWNTILATYVRDGDVEQAVGVFARM------PERSAAAVSSMVALFARTGMVEEARGV 225
Query: 211 FD 212
FD
Sbjct: 226 FD 227
>gi|242096366|ref|XP_002438673.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
gi|241916896|gb|EER90040.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
Length = 588
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 124/378 (32%), Positives = 205/378 (54%), Gaps = 56/378 (14%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGL---------------------------------- 27
L+D + D +PERN+V+W MI+G
Sbjct: 86 LEDARNVLDGMPERNVVSWTAMISGYSQNERPDQAWELFIMMLRAGIHQVKQVHAFAVKT 145
Query: 28 ----------------VKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALF 71
K ++ AR +F+ +P R+VVS+T I+ GYT++ AL LF
Sbjct: 146 NFELHMFVGSSLLDMYAKSENIQEARRVFDMLPARDVVSYTAILSGYTQLGLDEEALDLF 205
Query: 72 RRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYA 131
R ++ E + +++T A+ A+ + + +HG +R F + + N LID Y+
Sbjct: 206 R-LLYNEGMQCNQVTFTALLNALSGLSSMDYGKQVHGLILRREL-PFFMALQNSLIDMYS 263
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191
KCG + + ++F+ S+ +++VSW +++ G+ HG+ E V+ F M V KP+ VT
Sbjct: 264 KCGKLLYSRRVFD--SMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSMCDEV-KPDSVTL 320
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
L+VL+ SHGGLV+EGL FD +V+E L + +HYGC+ID+LGR+G+L++A + +P
Sbjct: 321 LAVLSGYSHGGLVDEGLDMFDHIVKEQSTLLNTEHYGCVIDLLGRSGQLQKALNLIEKMP 380
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
+ T +W +LLGAC H NV +GE V +K+L++E G+YV++ NI A + D
Sbjct: 381 FQPTR-AIWGSLLGACRVHTNVHVGEFVAQKLLDIEPENAGNYVILSNIYAAAGMWKDVF 439
Query: 312 RLRRVVDERNALKFPGRS 329
R+R+++ ++ +K PGRS
Sbjct: 440 RVRKLMLKKTVIKEPGRS 457
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 132/292 (45%), Gaps = 52/292 (17%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
++ + G LE AR++ + MP RNVVSWT +I GY++ R + A LF M+
Sbjct: 76 LVIMYARCGALEDARNVLDGMPERNVVSWTAMISGYSQNERPDQAWELFIMML------- 128
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
+ + +H + K F H+ V + L+D YAK I A ++
Sbjct: 129 --------------RAGIHQVKQVHAFAVKTNFE-LHMFVGSSLLDMYAKSENIQEARRV 173
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS--- 199
F+ + +++VS+T+I+SG+ G+ +EA++ F + ++ N+VTF ++LNA S
Sbjct: 174 FDMLPA--RDVVSYTAILSGYTQLGLDEEALDLFRLLYNEGMQCNQVTFTALLNALSGLS 231
Query: 200 --------HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
HG ++ L FF + LIDM + G+L + +V +P
Sbjct: 232 SMDYGKQVHGLILRRELPFFMAL------------QNSLIDMYSKCGKLLYSRRVFDSMP 279
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
+VV W +L HG + V + M D V + +L+G
Sbjct: 280 ER--SVVSWNAMLMGYGRHG---LAHEVVQLFRSMCDEVKPDSVTLLAVLSG 326
>gi|297849216|ref|XP_002892489.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338331|gb|EFH68748.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1014
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 112/329 (34%), Positives = 190/329 (57%), Gaps = 5/329 (1%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
D K+FDE+PERN+V WN+M+ G G+++ S F++M R++VSW +I ++ R
Sbjct: 677 DAQKVFDEMPERNVVVWNLMVRGFCDSGDVQRGLSFFKQMSERSIVSWNSMISSLSKCGR 736
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
AL LF M+ + +P E T++ + P G + + IH E G I V
Sbjct: 737 DREALELFCEMIDQGF-DPDEATVVTMLPISASLGVLDTGKWIHSTAESNGLIKDFITVG 795
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKV 182
N L+D Y K G + +A +F + +R+N+VSW ++ISG A++G G+ ++ F+ M ++
Sbjct: 796 NALVDFYCKSGDLEAATAIFRKM--QRRNVVSWNTMISGSAVNGKGESGIDLFDAMIEEG 853
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
+ PN TFL VL CS+ G VE G + F M+E ++ P +HYG ++D++ R+GR+ +
Sbjct: 854 KVAPNEATFLGVLACCSYTGQVERGEELFGLMMERFKLEPRTEHYGAMVDLMSRSGRIRE 913
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302
A + +P N +W +LL AC HG+V++ E +++++E G G+YVL+ N+ A
Sbjct: 914 AFEFLRNMPVN-ANAAMWGSLLSACRSHGDVKLAELAAMELVKIEPGNSGNYVLLSNLYA 972
Query: 303 GVWRYGDAERLRRVVDERNALKFPGRSLV 331
R+ D E++R ++ + K G+S +
Sbjct: 973 EEGRWQDVEKVRTLMKKNCLRKTTGQSTI 1001
>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 568
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 117/317 (36%), Positives = 186/317 (58%), Gaps = 5/317 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
N+ N +I G L + LF+EMP R+++SW+ +I + + + AL LF++M
Sbjct: 127 NIYVQNALINSYGTSGSLHASLKLFDEMPRRDLISWSSLISCFAKRGLPDEALTLFQQMQ 186
Query: 76 ACEY-TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
E P + +L+V A+ G + +H + + G N + + + LID Y++CG
Sbjct: 187 LKESDILPDGVVMLSVISAVSSLGALELGIWVHAFISRIGVN-LTVSLGSALIDMYSRCG 245
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
I ++K+F+++ +N+V+WT++I+G A+HG G+EA+E F M + LKP+R+ F+ V
Sbjct: 246 DIDRSVKVFDEM--PHRNVVTWTALINGLAVHGRGREALEAFYDMVESGLKPDRIAFMGV 303
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L ACSHGGLVEEG + F M E + P ++HYGC++D+LGRAG + +A G+
Sbjct: 304 LVACSHGGLVEEGRRVFSSMWSEYGIEPALEHYGCMVDLLGRAGMVLEAFDFVEGMRVR- 362
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLR 314
N V+WRTLLGAC H + + E+ +I E++ + GDYVL+ N GV + E +R
Sbjct: 363 PNSVIWRTLLGACVNHNLLVLAEKAKERIKELDPHHDGDYVLLSNAYGGVGNWVKKEGVR 422
Query: 315 RVVDERNALKFPGRSLV 331
+ E +K PG SLV
Sbjct: 423 NSMRESKIVKEPGLSLV 439
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 72/176 (40%), Gaps = 33/176 (18%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FDE+P RN+VTW +I GL G A F +M ++ + +R
Sbjct: 252 KVFDEMPHRNVVTWTALINGLAVHGRGREALEAFYDM-----------VESGLKPDR--- 297
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
+A +VAC + E VF ++W YG + + C+
Sbjct: 298 -IAFMGVLVACSHGGLVE-EGRRVFSSMWSE-----------YGIEPALEHY-----GCM 339
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
+D + G + A E + V R N V W +++ H + A + ER++++
Sbjct: 340 VDLLGRAGMVLEAFDFVEGMRV-RPNSVIWRTLLGACVNHNLLVLAEKAKERIKEL 394
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 197/315 (62%), Gaps = 4/315 (1%)
Query: 17 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVA 76
+V WNVMI G ++ G+ + AR LF++M R+VVSW +I GY++ A+ +FR M
Sbjct: 201 VVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKK 260
Query: 77 CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136
E P+ +T+++V PA+ + G + + +H Y E G + + + LID Y+KCG I
Sbjct: 261 GEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDV-LGSALIDMYSKCGII 319
Query: 137 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLN 196
A+ +FE + R+N+++W+++I+GFA+HG +A++ F +M++ ++P+ V ++++L
Sbjct: 320 EKAIMVFE--RLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLT 377
Query: 197 ACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256
ACSH GLVEEG ++F +MV + P I+HYGC++D+LGR G L++AE+ +P + +
Sbjct: 378 ACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPIKPDD 437
Query: 257 VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRV 316
V+W+ LLGAC H NVEMG+RV +++M G YV + N+ A + + +R
Sbjct: 438 -VIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLR 496
Query: 317 VDERNALKFPGRSLV 331
+ E + K PG S +
Sbjct: 497 MKEMDIRKDPGCSWI 511
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 145/330 (43%), Gaps = 52/330 (15%)
Query: 32 ELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG--ALALFRRMVACEYTEPSEITILA 89
+L+YA +F +MP RN SW II G++ + A+ LF M++ E+ EP+ T +
Sbjct: 67 DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPS 126
Query: 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE 149
V A + G ++ + IHG K GF +SN L+ Y CG + A LF +E
Sbjct: 127 VLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSN-LVRMYVICGLMKDACVLFYKNIIE 185
Query: 150 R-------------------------------------------KNLVSWTSIISGFAMH 166
R +++VSW ++ISG++ +
Sbjct: 186 REMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQN 245
Query: 167 GMGKEAVENFERMQK-VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIK 225
G K+AVE F M+K ++PN VT +SVL A S G +E G ++ E+ + D
Sbjct: 246 GFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELG-EWLHLYAEDSGIRIDDV 304
Query: 226 HYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
LIDM + G +E+A V +P E NV+ W ++ + HG + G+ +
Sbjct: 305 LGSALIDMYSKCGIIEKAIMVFERLPRE--NVITWSAMINGFAIHG--QAGDAIDCFCKM 360
Query: 286 MERGYGGDYVLMYNILAGVWRYGDAERLRR 315
+ G V N+L G E RR
Sbjct: 361 RQAGVRPSDVAYINLLTACSHAGLVEEGRR 390
>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 116/322 (36%), Positives = 186/322 (57%), Gaps = 5/322 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LF+++P R++V+WN MI G + +E A LF MP RNVVSW ++ Y R+ +
Sbjct: 129 LFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDEC 188
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L +F +M+ T P+E T+++V A G + + IH Y + + +S L+
Sbjct: 189 LRMFDKMMG--ETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALL 246
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
YAKCG + A +F+ +S +++VSW S+I G+ MHG +A+E F M+K PN
Sbjct: 247 TMYAKCGAMDLARDVFDKMS--NRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPN 304
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
TF+ VL+AC+H G++ EG +FD M ++ P ++HYGC++D+LGRAG ++ E++
Sbjct: 305 DATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELI 364
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P E +W LL AC H N E+ E V ++++E+E G Y+L+ NI A ++
Sbjct: 365 RKMPME-GGTALWGALLSACRTHSNSELAEIVAKRLIELEPRDIGPYLLLSNIYAAEGKW 423
Query: 308 GDAERLRRVVDERNALKFPGRS 329
D E +R+++ ER K G S
Sbjct: 424 DDVEIVRKMMKERGLTKTTGLS 445
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 124/276 (44%), Gaps = 20/276 (7%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E +L N +I G + AR++FE ++V+W +IDGY + A LF
Sbjct: 42 ELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEE 101
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M E + ++ NGD+ + + R ++ NC+ID YA+
Sbjct: 102 M-----PERDLFSWNSMIAGYVGNGDMTAAEDLFNKMPFRDIVSW-----NCMIDGYAQV 151
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
+ A +LF + +N+VSW +++ + E + F++M + PN T +S
Sbjct: 152 QNMEIACELFN--WMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETM-PNEATLVS 208
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVL-PDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
VL AC+H G ++ G K+ ++ V+ PD+ L+ M + G ++ A V + +
Sbjct: 209 VLTACAHLGRLDRG-KWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSN 267
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
+VV W +++ HG ++ L+ME+
Sbjct: 268 R--SVVSWNSMIMGYGMHGQ---ADKALEMFLDMEK 298
>gi|125529041|gb|EAY77155.1| hypothetical protein OsI_05121 [Oryza sativa Indica Group]
Length = 916
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 115/320 (35%), Positives = 191/320 (59%), Gaps = 7/320 (2%)
Query: 12 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALF 71
L E NL N ++T ++G+ E A +F + RN+ SW +I G+ + N AL +
Sbjct: 603 LIEFNLRVKNALLTMYFRFGDTESAELIFSSLVGRNLCSWNCMISGFAQNNEGLRALQFY 662
Query: 72 RRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYA 131
++M EY EP+EI+I+ + A Q GD+R + IHG+ + G ++ +S L+D Y+
Sbjct: 663 KKM---EYFEPNEISIVGIICACTQLGDLRQGKNIHGHVVRFGLQT-NVFISASLVDMYS 718
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191
KCG + ++++FE S K++ W S+IS F HG+G +++E F +M +K R TF
Sbjct: 719 KCGRLDISIRVFE--SSAEKSIACWNSMISAFGFHGLGLKSIEIFWKMNNSGVKATRSTF 776
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
+++L+ACSH GL +EGLK++ M+E ++P +H+ C++DMLGRAGRL++A K +P
Sbjct: 777 IALLSACSHSGLTDEGLKYYHLMIEHFGIIPTPEHHVCVVDMLGRAGRLQEAHKFVESLP 836
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
S+ + VW LL ACS ++M E V + +L +E G YV M N+ A + A
Sbjct: 837 SKQAH-GVWGALLSACSKKSELKMCESVAKHLLCLEPENSGYYVTMSNLYAYQDMWSGAV 895
Query: 312 RLRRVVDERNALKFPGRSLV 331
++R ++ ++ +K GRS++
Sbjct: 896 QVRDILQDKGLMKPRGRSII 915
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 124/248 (50%), Gaps = 10/248 (4%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG--ALALFRRMVACE 78
N ++ +K + AR LF MP R+++SW +I GY+R N S G A A+F+ +++ E
Sbjct: 407 NSLLDLYMKCNDPSTARILFRTMPMRDLISWNTMISGYSR-NDSLGEEAKAMFKGLLS-E 464
Query: 79 YTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFS 138
+ T++AV P+ + D+ + +H + K GF + +N LI Y CG +
Sbjct: 465 GLSCTLSTVVAVIPSCFCPQDLNFGKSVHSFILKYGFLT-GVSAANSLIHMYICCGDSLA 523
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK-VVLKPNRVTFLSVLNA 197
A L E I+ +++SW + I G +G+ +A+E F+ M + L P+ +T +SVL+
Sbjct: 524 AFSLLESIT-PMSDIISWNTAIVGCVQNGLYGDALEAFQFMHSTLTLNPDSITLVSVLSV 582
Query: 198 CSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNV 257
C + L G K M + + +++ L+ M R G E AE + S + N+
Sbjct: 583 CGNLKLQSLG-KSIHCMALKRLIEFNLRVKNALLTMYFRFGDTESAELIFSSLVGR--NL 639
Query: 258 VVWRTLLG 265
W ++
Sbjct: 640 CSWNCMIS 647
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 123/265 (46%), Gaps = 9/265 (3%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ +L WN ++ K G+ + +F+ MP R+ SW ++ G + + F+
Sbjct: 196 DTDLSLWNTLMDMYAKCGDFYSSEVVFQRMPYRDTTSWNSMVSGSLFNGLAEISAYYFKE 255
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNC-QLIHGYGEKRGFNAFHIHVSNCLIDTYAK 132
MV + + E+++ V A D+ + + +H K G+ V N LI Y +
Sbjct: 256 MVRSSF-QADEVSLSCVLSACSHLKDLFSFGESVHSSVIKLGYEDTTSSVENSLITFYYE 314
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
G +A ++F +S KNLV+W ++I G + EA+ F+ M+ +P+ T +
Sbjct: 315 LGFPEAAEEVF--LSTSNKNLVTWNAMIKGLVENDRVNEAMCMFQEMRSKN-QPDVATLV 371
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
++++AC GL+ EG + ++++ + + L+D+ + A + +P
Sbjct: 372 TIISACGDRGLLPEGKEVHGYIIKKGHIYEECSVGNSLLDLYMKCNDPSTARILFRTMP- 430
Query: 253 EITNVVVWRTLLGACSFHGNVEMGE 277
+ +++ W T++ + N +GE
Sbjct: 431 -MRDLISWNTMISG--YSRNDSLGE 452
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 116/255 (45%), Gaps = 13/255 (5%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +IT + G E A +F +N+V+W +I G +R N A+ +F+ M +
Sbjct: 306 NSLITFYYELGFPEAAEEVFLSTSNKNLVTWNAMIKGLVENDRVNEAMCMFQEMRS--KN 363
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+P T++ + A G + + +HGY K+G V N L+D Y KC +A
Sbjct: 364 QPDVATLVTIISACGDRGLLPEGKEVHGYIIKKGHIYEECSVGNSLLDLYMKCNDPSTAR 423
Query: 141 KLFEDISVERKNLVSWTSIISGFAMH-GMGKEAVENFERMQKVVLKPNRVTFLSVLNACS 199
LF + + ++L+SW ++ISG++ + +G+EA F+ + L T ++V+ +C
Sbjct: 424 ILFRTMPM--RDLISWNTMISGYSRNDSLGEEAKAMFKGLLSEGLSCTLSTVVAVIPSC- 480
Query: 200 HGGLVEEGLKF---FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256
+ L F + + L + LI M G A + I + +++
Sbjct: 481 ---FCPQDLNFGKSVHSFILKYGFLTGVSAANSLIHMYICCGDSLAAFSLLESI-TPMSD 536
Query: 257 VVVWRTLLGACSFHG 271
++ W T + C +G
Sbjct: 537 IISWNTAIVGCVQNG 551
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 22/187 (11%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
+IT + ++ A +F+E +++ W I T R A+ LFR MV
Sbjct: 104 VITAYSRVRDVCSALQVFDEAAAPDLILWNAAISALTLNCRYGDAVVLFRWMV------- 156
Query: 83 SEITILAVFPA----IWQNGDVRNCQL-----IHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
+L VF + I +G R L HG KR + + + N L+D YAKC
Sbjct: 157 ---DVLGVFDSTSMVIMLSGASRARSLEHGIAFHGMALKRRLDT-DLSLWNTLMDMYAKC 212
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G +S+ +F+ + ++ SW S++SG +G+ + + F+ M + + + V+
Sbjct: 213 GDFYSSEVVFQRM--PYRDTTSWNSMVSGSLFNGLAEISAYYFKEMVRSSFQADEVSLSC 270
Query: 194 VLNACSH 200
VL+ACSH
Sbjct: 271 VLSACSH 277
>gi|147841473|emb|CAN62101.1| hypothetical protein VITISV_033310 [Vitis vinifera]
Length = 396
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 113/316 (35%), Positives = 192/316 (60%), Gaps = 5/316 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
N++ M+ VK G ++ R +F+ M R+VV W+ +I GY + RSN AL LF M
Sbjct: 40 NMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVXWSAMIAGYAQNGRSNEALELFEXMK 99
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
+ + +P+++T+++V A Q G V + I Y E RG + +++V++ L+ Y+KCG
Sbjct: 100 SAQ-IKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLIS-NVYVASALLGMYSKCGN 157
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
I A ++F+ + +R N V+W S+I G A++G ++A+ + RM+++ +KPN +TF+ +L
Sbjct: 158 IIKARQIFDKLP-QRDN-VTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLL 215
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
AC+H G VE GL+FF M + + P+I+H+ C++D+ R+GRL A + + E
Sbjct: 216 TACTHAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVE-P 274
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
NVV+W TLL A H NVE+ E +K+LE+E G+YV++ NI A R+ +A ++R+
Sbjct: 275 NVVIWGTLLSASRIHLNVELAELAGKKLLELEPDNSGNYVILSNIYASASRWQEALKVRK 334
Query: 316 VVDERNALKFPGRSLV 331
++ ++ K S V
Sbjct: 335 LMKDKRVQKAAAYSWV 350
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 35/161 (21%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FD+LP+R+ VTWN MI GL I+G+ +
Sbjct: 163 QIFDKLPQRDNVTWNSMIMGLA--------------------------INGF-----AED 191
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVR-NCQLIHGYGEKRGFNAFHIHVSNC 125
A+AL+ RM E +P+ IT + + A G V + + H + C
Sbjct: 192 AIALYNRMKEIE-VKPNNITFVGLLTACTHAGHVELGLEFFRSMRSDHNISPNIEHFA-C 249
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 166
++D + + G + A + + VE N+V W +++S +H
Sbjct: 250 IVDLFCRSGRLIDAYEFICRMEVE-PNVVIWGTLLSASRIH 289
>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 618
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 112/316 (35%), Positives = 193/316 (61%), Gaps = 5/316 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
N++ M+ VK G ++ R +F+ M R+VV+W+ +I GY + RSN AL LF M
Sbjct: 262 NMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMK 321
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
+ + +P+++T+++V A Q G V + I Y E RG + +++V++ L+ Y+KCG
Sbjct: 322 SAQ-IKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLIS-NVYVASALLGMYSKCGN 379
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
I A ++F+ + +R N V+W S+I G A++G ++A+ + RM+++ +KPN +TF+ ++
Sbjct: 380 IIKARQIFDKLP-QRDN-VTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLM 437
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
AC+H G VE GL+FF M + + P+I+H+ C++D+ R+GRL A + + E
Sbjct: 438 TACTHAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVE-P 496
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
NVV+W TLL A H NVE+ E +K+LE+E G+YV++ NI A R+ +A ++R+
Sbjct: 497 NVVIWGTLLSASRIHLNVELAELAGKKLLELEPDNSGNYVILSNIYASAGRWQEALKVRK 556
Query: 316 VVDERNALKFPGRSLV 331
++ ++ K S V
Sbjct: 557 LMKDKRVQKAAAYSWV 572
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 150/280 (53%), Gaps = 7/280 (2%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FD + ++ + +N +I+ + GE+ AR LF++M R++VSW +I Y + +
Sbjct: 153 IFDGILVKDTIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKG 212
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
+F+RM E EP+EIT+ V + GD+ I + + + I VS ++
Sbjct: 213 WIIFQRMQD-EMCEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMI-VSTAML 270
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
+ Y KCG + +F+ ++ R+++V+W+++I+G+A +G EA+E FE M+ +KPN
Sbjct: 271 EMYVKCGAVDDGRLVFDHMA--RRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPN 328
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
VT +SVL+AC+ G VE G + VE ++ ++ L+ M + G + +A ++
Sbjct: 329 DVTLVSVLSACAQLGSVETGER-IGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIF 387
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME 287
+P + V W +++ + +G E + ++ E+E
Sbjct: 388 DKLPQR--DNVTWNSMIMGLAINGFAEDAIALYNRMKEIE 425
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 86/381 (22%), Positives = 155/381 (40%), Gaps = 90/381 (23%)
Query: 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM------V 75
+ I L+ ++YAR +F+++P + I Y+R++ +N AL F M +
Sbjct: 35 LFIRRLLNASFIQYARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRI 94
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGE----KRGFNAFHIHVS-------- 123
C +T P A AI V + + +G+ + F+ ++
Sbjct: 95 VC-FTIPPIFKSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELI 153
Query: 124 ------------NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKE 171
NCLI Y++ G + +A +LF+ + +++VSW ++IS +A +G +
Sbjct: 154 FDGILVKDTIAYNCLISAYSRSGEVLAARELFD--KMRDRSIVSWNAMISCYAQNGDYHK 211
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF--------------------- 210
F+RMQ + +PN +T +VL+ C+ G +E GL+
Sbjct: 212 GWIIFQRMQDEMCEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLE 271
Query: 211 --------------FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA------EKVASGI 250
FD M D+ + +I + GR +A K A
Sbjct: 272 MYVKCGAVDDGRLVFDHMARR-----DVVTWSAMIAGYAQNGRSNEALELFENMKSAQIK 326
Query: 251 PSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDA 310
P+++T V ++L AC+ G+VE GER+ + RG + + +L + G+
Sbjct: 327 PNDVTLV----SVLSACAQLGSVETGERIGSYV--ESRGLISNVYVASALLGMYSKCGNI 380
Query: 311 ERLRRVVDERNALKFPGRSLV 331
+ R++ D K P R V
Sbjct: 381 IKARQIFD-----KLPQRDNV 396
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 35/161 (21%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FD+LP+R+ VTWN MI GL I+G+ +
Sbjct: 385 QIFDKLPQRDNVTWNSMIMGLA--------------------------INGF-----AED 413
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVR-NCQLIHGYGEKRGFNAFHIHVSNC 125
A+AL+ RM E +P+ IT + + A G V + + H + C
Sbjct: 414 AIALYNRMKEIE-VKPNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFA-C 471
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 166
++D + + G + A + + VE N+V W +++S +H
Sbjct: 472 IVDLFCRSGRLIDAYEFICRMEVE-PNVVIWGTLLSASRIH 511
>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 600
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 189/330 (57%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+++ KLF +PERN+V+W+ +++G K G++E AR +F++MP +N+V+WT ++ +
Sbjct: 232 VEEAFKLFQCMPERNVVSWSTVVSGYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQN 291
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
A LF +M E ++++ A ++G + + IH Y R H
Sbjct: 292 GLVEEAGKLFTQMKEAS-VELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGR-STH 349
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LID + KCGCI A +F D + K+ VSW +II GFAMHG G +A++ F +M+
Sbjct: 350 VCNALIDMFCKCGCINRADYVF-DTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKL 408
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
P+ VT ++VL+AC+H G VEEG ++F M + V+P I+HYGC+ID+LGR G ++
Sbjct: 409 QGFCPDAVTMINVLSACTHMGFVEEGRRYFANMERDYGVVPQIEHYGCMIDLLGRGGLIK 468
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + +P + N V+W +LL AC H NVE E ++ +++ G+Y ++ +I
Sbjct: 469 EAVDLIKSMPWD-PNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSSIY 527
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ D + R + + K G S +
Sbjct: 528 AEAGKWSDMAKARMQMKGTGSQKSSGSSWI 557
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 151/317 (47%), Gaps = 53/317 (16%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
D SK+F+E+P R++V+WN + +V+ GE+E AR +F+EM ++ VSW ++DGYT+
Sbjct: 170 FSDASKVFEEMPRRDVVSWNSAMAAMVRQGEVEGARRMFDEMLEKDTVSWNTLLDGYTKA 229
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
A LF+ M E +++ W
Sbjct: 230 GDVEEAFKLFQCM--------PERNVVS-----W-------------------------- 250
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ ++ Y K G + A +F+ + KNLV+WT ++S A +G+ +EA + F +M++
Sbjct: 251 --STVVSGYCKKGDMEMARVIFDKMPT--KNLVTWTIMVSACAQNGLVEEAGKLFTQMKE 306
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++ + +S+L AC+ G + G K + V ++ LIDM + G +
Sbjct: 307 ASVELDVAAVVSILAACAESGSLALG-KRIHRYVRTRQLGRSTHVCNALIDMFCKCGCIN 365
Query: 242 QAEKVASGIPSEIT--NVVVWRTLLGACSFHGNVEMGERVTRKILEME-RGYGGDYVLMY 298
+A+ V +EI + V W T++G + HG+ G++ +M+ +G+ D V M
Sbjct: 366 RADYV---FDTEIVEKDSVSWNTIIGGFAMHGH---GDKALDFFAQMKLQGFCPDAVTMI 419
Query: 299 NILAGVWRYGDAERLRR 315
N+L+ G E RR
Sbjct: 420 NVLSACTHMGFVEEGRR 436
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 18/204 (8%)
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+V N LID Y+K G A K+FE++ R+++VSW S ++ G VE RM
Sbjct: 155 YVGNALIDAYSKNGGFSDASKVFEEMP--RRDVVSWNSAMAAMVRQG----EVEGARRMF 208
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+L+ + V++ ++L+ + G VEE K F M E ++ + ++ + G +
Sbjct: 209 DEMLEKDTVSWNTLLDGYTKAGDVEEAFKLFQCMPER-----NVVSWSTVVSGYCKKGDM 263
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E A + +P++ N+V W ++ AC+ +G VE ++ ++ E D + +I
Sbjct: 264 EMARVIFDKMPTK--NLVTWTIMVSACAQNGLVEEAGKLFTQMKEASVEL--DVAAVVSI 319
Query: 301 LAGVWRYGD---AERLRRVVDERN 321
LA G +R+ R V R
Sbjct: 320 LAACAESGSLALGKRIHRYVRTRQ 343
>gi|347954502|gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virginicum]
Length = 485
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 119/331 (35%), Positives = 188/331 (56%), Gaps = 6/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ +FD + ++N VTWN MI G ++ G+++ A +F++MP R+++SWT +I G+ +
Sbjct: 110 LRKARLVFDYIEDKNSVTWNTMIDGYMRNGQVDNAVDVFDKMPDRDLISWTAMITGFVKK 169
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
ALA FR M P + I++ A G + +H Y + F ++
Sbjct: 170 GFHEEALAWFREM-QISGVNPDYVAIISAVAACTNLGALSFGLWVHRYVLSQDFRN-NVR 227
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VSN LID Y +CGC+ A ++F+ + E++ +VSW S+I GFA +G E++ F +MQ+
Sbjct: 228 VSNSLIDLYCRCGCVEFARQVFDKM--EKRTVVSWNSVIVGFAANGNANESLVYFRKMQR 285
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
P+ VTF L ACSH GLVEEG ++F M + + P I+HYGCL+D+ RAGRLE
Sbjct: 286 EGFTPDGVTFTGALTACSHVGLVEEGFQYFQMMKHDYRISPRIEHYGCLVDLYSRAGRLE 345
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGN-VEMGERVTRKILEMERGYGGDYVLMYNI 300
A V +P + N VV +LL AC HGN + ER+ + I +++ +YV++ N+
Sbjct: 346 DAFIVVESMPMK-PNEVVIGSLLAACRNHGNHTILAERLMKYITDLDVKSHSNYVILSNM 404
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ A ++RR + K PG S +
Sbjct: 405 YAADGKWEGASKMRRKMKGLGLKKQPGYSSI 435
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 114/257 (44%), Gaps = 35/257 (13%)
Query: 47 NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAI--WQNGDVRNCQ 104
+VSWT I +R R A+ F M EP+ IT +A+ A + +G
Sbjct: 20 TIVSWTSRITLLSRDGRLAEAVREFSDMRLAG-IEPNHITFIALLSACGNFPSGSEGLGY 78
Query: 105 LIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI------------------ 146
L+HGY K G H+ V ++ Y+K G + A +F+ I
Sbjct: 79 LLHGYACKLGLERSHVMVGTAILGMYSKSGHLRKARLVFDYIEDKNSVTWNTMIDGYMRN 138
Query: 147 -----------SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ ++L+SWT++I+GF G +EA+ F MQ + P+ V +S +
Sbjct: 139 GQVDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIISAV 198
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
AC++ G + GL + + V + +++ LID+ R G +E A +V + E
Sbjct: 199 AACTNLGALSFGL-WVHRYVLSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDKM--EKR 255
Query: 256 NVVVWRTLLGACSFHGN 272
VV W +++ + +GN
Sbjct: 256 TVVSWNSVIVGFAANGN 272
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 6/136 (4%)
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
+ +VSWTS I+ + G EAV F M+ ++PN +TF+++L+AC + EGL +
Sbjct: 19 ETIVSWTSRITLLSRDGRLAEAVREFSDMRLAGIEPNHITFIALLSACGNFPSGSEGLGY 78
Query: 211 FDKMVEECEVLPDIKHY---GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC 267
C++ + H ++ M ++G L +A V I E N V W T++
Sbjct: 79 LLHGY-ACKLGLERSHVMVGTAILGMYSKSGHLRKARLVFDYI--EDKNSVTWNTMIDGY 135
Query: 268 SFHGNVEMGERVTRKI 283
+G V+ V K+
Sbjct: 136 MRNGQVDNAVDVFDKM 151
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 117/330 (35%), Positives = 191/330 (57%), Gaps = 14/330 (4%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K++D+ +++++ NVM++ V G A++LF++M RN W I+ GY
Sbjct: 636 KVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKE 695
Query: 67 ALALFRRMVAC--EYTEPSEITIL---AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ F M+ EY + +TI+ + PA+ ++GD + +I K+GF +
Sbjct: 696 SFNHFLEMLESDIEYDVLTMVTIVNLCSSLPAL-EHGDQLHSLII-----KKGFVNCSVV 749
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ L+D Y+KCG I A +F++++ KN+VSW ++ISG++ HG KEA+ +E M K
Sbjct: 750 LETALVDMYSKCGAITKARTVFDNMN--GKNIVSWNAMISGYSKHGCSKEALILYEEMPK 807
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ PN VTFL++L+ACSH GLVEEGL+ F M E+ + +HY C++D+LGRAGRLE
Sbjct: 808 KGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLE 867
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A++ +P E V W LLGAC H +++MG +++ E++ G YV+M NI
Sbjct: 868 DAKEFVEKMPIE-PEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIY 926
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ + E +R+++ + K PG S +
Sbjct: 927 AAAGRWKEVEDIRQMMKMKGVKKDPGVSWI 956
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 128/286 (44%), Gaps = 33/286 (11%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
+N++ ++ + G L YA+ +F M RN SW +I+GY + + AL LF++M
Sbjct: 512 KNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQM 571
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
+P ++ ++ + D + + +H + + I + L+D YAKCG
Sbjct: 572 -QLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGI-LQVVLVDMYAKCG 629
Query: 135 CIFSALKLFEDI-----------------------------SVERKNLVSWTSIISGFAM 165
+ A K+++ +E++N W SI++G+A
Sbjct: 630 SMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYAN 689
Query: 166 HGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIK 225
G+ KE+ +F M + ++ + +T ++++N CS +E G + ++++ V +
Sbjct: 690 KGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVV 749
Query: 226 HYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
L+DM + G + +A V + + N+V W ++ S HG
Sbjct: 750 LETALVDMYSKCGAITKARTVFDNMNGK--NIVSWNAMISGYSKHG 793
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 140/297 (47%), Gaps = 10/297 (3%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I K + E +F+EM RN V+W II + N AL LF RM Y
Sbjct: 315 NALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGY- 373
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+ + + ++ A D+ + +HG+ + N+ I + + L+D Y+KCG + A
Sbjct: 374 KSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNS-DIILGSALVDMYSKCGMVEEAH 432
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFLSVLNACS 199
++F S+ +N VS+ ++++G+ G +EA+E + MQ ++P++ TF ++L C+
Sbjct: 433 QVFR--SLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCA 490
Query: 200 HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVV 259
+ +G + ++ + +I L+ M GRL A+++ + + N
Sbjct: 491 NQRNDNQGRQIHAHLI-RANITKNIIVETELVHMYSECGRLNYAKEIFNRMAER--NAYS 547
Query: 260 WRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRV 316
W +++ +G + R+ +++ G D + ++L+ D+++ R +
Sbjct: 548 WNSMIEGYQQNGETQEALRLFKQM--QLNGIKPDCFSLSSMLSSCVSLSDSQKGREL 602
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 113/240 (47%), Gaps = 17/240 (7%)
Query: 32 ELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM-----VACEYTEPSEIT 86
+L YAR LFEEMP RN+ +W +I Y R++ L L+ RM + ++T PS
Sbjct: 124 DLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPS--- 180
Query: 87 ILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI 146
++ A+ G VR Q K G N ++ V L+D YA+ G + A+ ++I
Sbjct: 181 VIKACIAMEDMGGVRQLQ---SSVVKAGLNC-NLFVGGALVDGYARFGWMDDAVTSLDEI 236
Query: 147 SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEE 206
E ++V+W ++I+G+ +EA F+RM K+ + P+ TF S L C +
Sbjct: 237 --EGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDG 294
Query: 207 GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
G + K++ C D LIDM + E KV + N V W +++ A
Sbjct: 295 GKQVHSKLI-ACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGER--NQVTWNSIISA 351
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 113/259 (43%), Gaps = 7/259 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL ++ G ++G ++ A + +E+ +VV+W +I GY ++ A +F RM+
Sbjct: 209 NLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRML 268
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
P T + + +H GF V N LID YAKC
Sbjct: 269 KIGVC-PDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKG-DTFVGNALIDMYAKCDD 326
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
S LK+F+++ +N V+W SIIS A G +A+ F RMQ+ K NR S+L
Sbjct: 327 EESCLKVFDEMG--ERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSIL 384
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
A + + +G + +V + DI L+DM + G +E+A +V +
Sbjct: 385 MASAGLADIGKGRELHGHLVRNL-LNSDIILGSALVDMYSKCGMVEEAHQVFRSLLER-- 441
Query: 256 NVVVWRTLLGACSFHGNVE 274
N V + LL G E
Sbjct: 442 NEVSYNALLAGYVQEGKAE 460
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 116/317 (36%), Positives = 184/317 (58%), Gaps = 5/317 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
N+ N +I VK G+LE A +LFE++ +NVVSW +I GYT M+ AL LFRRM+
Sbjct: 295 NIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMM 354
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH-IHVSNCLIDTYAKCG 134
+P+++T L++ PA G + + +H Y +K + + + + LID YAKCG
Sbjct: 355 QSN-IDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCG 413
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
+ A ++F+ + K+L +W ++ISGFAMHG A+ F RM P+ +TF+ V
Sbjct: 414 DLAVAKRIFD--CMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGV 471
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L AC H GL+ G ++F M+++ +V P + HYGC+ID+ GRAG ++AE + + +
Sbjct: 472 LTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMK- 530
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLR 314
+ +W +LLGAC H +E+ E V + + E+E YVL+ NI AG R+ D ++R
Sbjct: 531 PDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIR 590
Query: 315 RVVDERNALKFPGRSLV 331
+++ K PG S +
Sbjct: 591 TRLNDNRMKKVPGCSSI 607
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 149/275 (54%), Gaps = 16/275 (5%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FD+ R+ V++ +ITG G L+ AR LF+E+P R+VVSW +I GY + R A
Sbjct: 185 VFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEA 244
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQL---IHGYGEKRGFNAFHIHVSN 124
+A F M + T P+ T+L+V A Q+G + QL + + E RG + +I + N
Sbjct: 245 MAFFEEMRRAKVT-PNVSTMLSVLSACAQSGS--SLQLGNWVRSWIEDRGLGS-NIRLVN 300
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LID Y KCG + A LFE I + KN+VSW +I G+ KEA+ F RM + +
Sbjct: 301 GLIDMYVKCGDLEEASNLFEKI--QDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNI 358
Query: 185 KPNRVTFLSVLNACSHGGLVEEGL---KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
PN VTFLS+L AC++ G ++ G + DK ++ + + + LIDM + G L
Sbjct: 359 DPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMK--NTVALWTSLIDMYAKCGDLA 416
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMG 276
A+++ + ++ ++ W ++ + HG+ +
Sbjct: 417 VAKRIFDCMNTK--SLATWNAMISGFAMHGHTDTA 449
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 125/266 (46%), Gaps = 37/266 (13%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G+L YA SLF+ + N V W +I G + AL + M++ TEP+E T ++
Sbjct: 76 GDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSG-TEPNEYTFPSI 134
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGF--NAFHIHVS------------------------- 123
F + + + +H + K G NAF +H S
Sbjct: 135 FKSCTKIRGAHEGKQVHAHVLKLGLEHNAF-VHTSLINMYAQNGELVNARLVFDKSSMRD 193
Query: 124 ----NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
LI YA G + A +LF++I V +++VSW ++ISG+A G +EA+ FE M
Sbjct: 194 AVSFTALITGYASKGFLDEARELFDEIPV--RDVVSWNAMISGYAQSGRVEEAMAFFEEM 251
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
++ + PN T LSVL+AC+ G + + +E+ + +I+ LIDM + G
Sbjct: 252 RRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGD 311
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLG 265
LE+A + I + NVV W ++G
Sbjct: 312 LEEASNLFEKIQDK--NVVSWNVMIG 335
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 68/158 (43%), Gaps = 12/158 (7%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ + W +I K G+L A+ +F+ M +++ +W +I G+ ++ AL LF R
Sbjct: 396 KNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSR 455
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVR-----NCQLIHGYGEKRGFNAFHIHVSNCLID 128
M + + P +IT + V A G + +I Y + C+ID
Sbjct: 456 MTSEGFV-PDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHY-----GCMID 509
Query: 129 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 166
+ + G A L +++ ++ + W S++ +H
Sbjct: 510 LFGRAGLFDEAETLVKNMEMKPDGAI-WCSLLGACRIH 546
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 114/331 (34%), Positives = 191/331 (57%), Gaps = 9/331 (2%)
Query: 5 GSKLFDELPERNLVT----WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
G ++ ++ E L T N ++ G ++ AR +F+ M R++V++ +I GY
Sbjct: 566 GRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAA 625
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
N AL LF R+ E +P ++T + + A +G + + IH K G+ +
Sbjct: 626 HNLGKEALKLFDRLQE-EGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLS-DT 683
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+ N L+ TYAKCG AL +F+ + ++N++SW +II G A HG G++ ++ FERM+
Sbjct: 684 SLGNALVSTYAKCGSFSDALLVFDKMM--KRNVISWNAIIGGCAQHGRGQDVLQLFERMK 741
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+KP+ VTF+S+L+ACSH GL+EEG ++F M + + P I+HYGC++D+LGRAG+L
Sbjct: 742 MEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQL 801
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
++ E + +P + N +W LLGAC HGNV + ER L+++ YV + ++
Sbjct: 802 DEVEALIKTMPFQ-ANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHM 860
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + A +LR+++++R K PGRS +
Sbjct: 861 YAAAGMWDSAAKLRKLMEQRGVTKEPGRSWI 891
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 146/307 (47%), Gaps = 11/307 (3%)
Query: 6 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 65
S + + E +L ++ K G + R +FE++ R++++W +I G
Sbjct: 369 SHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWE 428
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
A ++ +M E P++IT + + A + + IH K GF F I V N
Sbjct: 429 EASEIYHQMQR-EGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGF-MFDISVQNA 486
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
LI YA+CG I A LF + RK+++SWT++I G A G+G EA+ F+ MQ+ LK
Sbjct: 487 LISMYARCGSIKDARLLFNKMV--RKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLK 544
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PNRVT+ S+LNACS ++ G + +++ E + D L++M G ++ A +
Sbjct: 545 PNRVTYTSILNACSSPAALDWGRRIHQQVI-EAGLATDAHVANTLVNMYSMCGSVKDARQ 603
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM-ERGYGGDYVLMYNILAGV 304
V + ++V + ++G + H +G+ + + E G D V N+L
Sbjct: 604 VFDRMTQR--DIVAYNAMIGGYAAHN---LGKEALKLFDRLQEEGLKPDKVTYINMLNAC 658
Query: 305 WRYGDAE 311
G E
Sbjct: 659 ANSGSLE 665
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 153/319 (47%), Gaps = 50/319 (15%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR----NVVSWTGIIDG 57
+KD LF+++ +++++W MI GL K G A ++F++M N V++T I++
Sbjct: 497 IKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNA 556
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
+ S AL RR IH + G A
Sbjct: 557 CS----SPAALDWGRR--------------------------------IHQQVIEAGL-A 579
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
HV+N L++ Y+ CG + A ++F+ ++ ++++V++ ++I G+A H +GKEA++ F+
Sbjct: 580 TDAHVANTLVNMYSMCGSVKDARQVFDRMT--QRDIVAYNAMIGGYAAHNLGKEALKLFD 637
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
R+Q+ LKP++VT++++LNAC++ G +E K +V + L D L+ +
Sbjct: 638 RLQEEGLKPDKVTYINMLNACANSGSLEWA-KEIHSLVLKDGYLSDTSLGNALVSTYAKC 696
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME-RGYGGDYVL 296
G A V + NV+ W ++G C+ HG G+ V + M+ G D V
Sbjct: 697 GSFSDALLVFDKMMKR--NVISWNAIIGGCAQHGR---GQDVLQLFERMKMEGIKPDIVT 751
Query: 297 MYNILAGVWRYGDAERLRR 315
++L+ G E RR
Sbjct: 752 FVSLLSACSHAGLLEEGRR 770
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 129/267 (48%), Gaps = 9/267 (3%)
Query: 19 TWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYTRMNRSNGALALFRRMVA 76
T N +I ++ G +E AR ++ ++ R V SW ++ GY + AL L R M
Sbjct: 178 TVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQ 237
Query: 77 CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136
T + + + + + IH K F ++V+NC+++ YAKCG I
Sbjct: 238 -HGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARL-LFDVNVANCILNMYAKCGSI 295
Query: 137 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLN 196
A ++F+ + E K++VSWT II G+A G + A E F++MQ+ + PNR+T+++VLN
Sbjct: 296 HEAREVFDKM--ETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLN 353
Query: 197 ACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256
A S ++ G K + D+ L+ M + G + +V + + +
Sbjct: 354 AFSGPAALKWG-KTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNR--D 410
Query: 257 VVVWRTLLGACSFHGNVEMGERVTRKI 283
++ W T++G + GN E + ++
Sbjct: 411 LIAWNTMIGGLAEGGNWEEASEIYHQM 437
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/317 (21%), Positives = 136/317 (42%), Gaps = 69/317 (21%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + ++FD++ +++V+W ++I G G E A +F++M VV
Sbjct: 295 IHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVV------------ 342
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
P+ IT + V A ++ + +H + G + +
Sbjct: 343 --------------------PNRITYINVLNAFSGPAALKWGKTVHSHILNAGHES-DLA 381
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V L+ YAKCG ++FE + ++L++W ++I G A G +EA E + +MQ+
Sbjct: 382 VGTALVKMYAKCGSYKDCRQVFEKLV--NRDLIAWNTMIGGLAEGGNWEEASEIYHQMQR 439
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ PN++T++ +LNAC + + G + ++V++ + DI LI M R G ++
Sbjct: 440 EGMMPNKITYVILLNACVNPTALHWGREIHSRVVKD-GFMFDISVQNALISMYARCGSIK 498
Query: 242 QAEKV--------------------ASGIPSEI-------------TNVVVWRTLLGACS 268
A + SG+ +E N V + ++L ACS
Sbjct: 499 DARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACS 558
Query: 269 FHGNVEMGERVTRKILE 285
++ G R+ ++++E
Sbjct: 559 SPAALDWGRRIHQQVIE 575
>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 119/363 (32%), Positives = 196/363 (53%), Gaps = 44/363 (12%)
Query: 8 LFDELPERNLVTWNVMITGLV--------------------------------------- 28
LFD++P R++ +WN MI+GL+
Sbjct: 172 LFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYA 231
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
K G L+ A +FE +P ++V+SW +I GY + ++ A+ +++ M C+ P++ T +
Sbjct: 232 KLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWV 291
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
++ PA G ++ IHG K + + V+ CLID Y KCG + A+ LF +
Sbjct: 292 SILPAYAHVGALQQGMKIHGRVIKTNLH-LDVFVATCLIDVYGKCGRLVDAMSLFYQVPQ 350
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
E V+W +IIS +HG ++ ++ F M +KP+ VTF+S+L+ACSH G VEEG
Sbjct: 351 ESS--VTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEG- 407
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
K+ ++++E + P +KHYGC++D+LGRAG LE A +P + + +W LLGAC
Sbjct: 408 KWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQ-PDASIWGALLGACR 466
Query: 269 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGR 328
HGN+E+G+ + ++ E++ G YVL+ NI A V ++ +++R + ER K PG
Sbjct: 467 IHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGW 526
Query: 329 SLV 331
S +
Sbjct: 527 STI 529
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 148/298 (49%), Gaps = 46/298 (15%)
Query: 20 WNVMITGLV-----KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
WNV + + ++G ARSLF++MP R++ SW +I G + + AL + M
Sbjct: 148 WNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEM 207
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
E + + +T++++ P +D YAK G
Sbjct: 208 -RLEGIKMNFVTVVSILPV--------------------------------FVDMYAKLG 234
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFLS 193
+ SA K+FE I V K+++SW ++I+G+A +G+ EA+E ++ M++ + PN+ T++S
Sbjct: 235 LLDSAHKVFEIIPV--KDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVS 292
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L A +H G +++G+K ++++ L D+ CLID+ G+ GRL A + +P E
Sbjct: 293 ILPAYAHVGALQQGMKIHGRVIKTNLHL-DVFVATCLIDVYGKCGRLVDAMSLFYQVPQE 351
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
+ V W ++ HG+ E ++ ++L + G D+V ++L+ G E
Sbjct: 352 SS--VTWNAIISCHGIHGHAEKTLKLFGEML--DEGVKPDHVTFVSLLSACSHSGFVE 405
>gi|242065790|ref|XP_002454184.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
gi|241934015|gb|EES07160.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
Length = 530
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 125/333 (37%), Positives = 193/333 (57%), Gaps = 10/333 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ D KLFD L ERN+V+W +++G + G++ A LFE MP R+V +W II G ++
Sbjct: 170 MADARKLFDGLTERNVVSWTALVSGYARAGKVGDAIVLFERMPERDVAAWNAIIAGCSQN 229
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
A+ +F RMV + P+ T+ V A G ++ +LIH Y R F
Sbjct: 230 GLFVEAVGIFGRMVGAGF-RPNATTVSCVLSACGHLGMLKIGKLIHCYA-WRTCVGFGSS 287
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LID Y KCG + A +F+++S ++L +W S+I+ A+HG K A+ F M+
Sbjct: 288 VLNGLIDMYGKCGNLEGARWIFDEVS--DRSLTTWNSLINCLALHGHSKCAISVFNEMRG 345
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++P+ VTF+ +LNAC+HGG V+EG+++F+ M E + P+I+HYGC+ID+LGRAGR +
Sbjct: 346 EGVEPDVVTFVGLLNACTHGGFVDEGIRYFELMQHEHGIEPEIEHYGCIIDLLGRAGRFQ 405
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A V S + E + V+W +LL AC H VE E RK+LE++ V++ N+
Sbjct: 406 DALNVISDMRIE-ADEVMWGSLLNACRVHRQVEFAELAIRKLLELDPNNANYVVMLANVY 464
Query: 302 A--GVWRYGDAERLRRVVDERN-ALKFPGRSLV 331
+ G+W + ++R+ V E N K PG S +
Sbjct: 465 SEGGLWE--EVRKVRKFVKEENIGKKLPGCSWI 495
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 116/282 (41%), Gaps = 49/282 (17%)
Query: 33 LEYARSLFEEMPCRNVVSWTGII-----------DGYTRMNRSNGALALFRRMVACEYTE 81
L YAR LF+ P +V ++ I+ + ALALF RM+
Sbjct: 58 LTYARHLFDATPHPSVFLYSAILSAYVSAAATASSYAHAHAHARDALALFLRMLRHGRPA 117
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
P++ V A G V + IH + K GF I + ++D Y++ G + A K
Sbjct: 118 PNQFVYPLVLRAASGVG-VGIVKSIHSHACKSGFCGHDI-IRTSVLDGYSRHGMMADARK 175
Query: 142 LFEDISVERKNLVSWTSIISGFA-------------------------------MHGMGK 170
LF+ ++ +N+VSWT+++SG+A +G+
Sbjct: 176 LFDGLT--ERNVVSWTALVSGYARAGKVGDAIVLFERMPERDVAAWNAIIAGCSQNGLFV 233
Query: 171 EAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCL 230
EAV F RM +PN T VL+AC H G+++ G C G L
Sbjct: 234 EAVGIFGRMVGAGFRPNATTVSCVLSACGHLGMLKIGKLIHCYAWRTCVGFGSSVLNG-L 292
Query: 231 IDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
IDM G+ G LE A + + ++ W +L+ + HG+
Sbjct: 293 IDMYGKCGNLEGARWIFDEVSDR--SLTTWNSLINCLALHGH 332
>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g30700; AltName: Full=Protein DYW9
gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 792
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 175/311 (56%), Gaps = 5/311 (1%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
+ T K E+E AR LF+E P +++ SW +I GYT+ + A++LFR M E++
Sbjct: 358 TALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFS 417
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P+ +TI + A Q G + + +H F + I+VS LI YAKCG I A
Sbjct: 418 -PNPVTITCILSACAQLGALSLGKWVHDLVRSTDFES-SIYVSTALIGMYAKCGSIAEAR 475
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
+LF+ ++ +KN V+W ++ISG+ +HG G+EA+ F M + P VTFL VL ACSH
Sbjct: 476 RLFDLMT--KKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSH 533
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
GLV+EG + F+ M+ P +KHY C++D+LGRAG L++A + + E VW
Sbjct: 534 AGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIE-PGSSVW 592
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320
TLLGAC H + + V+ K+ E++ G +VL+ NI + Y A +R+ +R
Sbjct: 593 ETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKR 652
Query: 321 NALKFPGRSLV 331
K PG +L+
Sbjct: 653 KLAKAPGYTLI 663
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 128/258 (49%), Gaps = 14/258 (5%)
Query: 19 TWNVMITGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
+ + ++TG + K G+++ +LF E ++V++ +I GYT + +L+LF+ +
Sbjct: 254 SHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKEL 313
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
+ S T++++ P +G + IHGY K F + H VS L Y+K
Sbjct: 314 MLSGARLRSS-TLVSLVPV---SGHLMLIYAIHGYCLKSNFLS-HASVSTALTTVYSKLN 368
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
I SA KLF++ K+L SW ++ISG+ +G+ ++A+ F MQK PN VT +
Sbjct: 369 EIESARKLFDE--SPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCI 426
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L+AC+ G + G K+ +V + I LI M + G + +A ++ + +
Sbjct: 427 LSACAQLGALSLG-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKK- 484
Query: 255 TNVVVWRTLLGACSFHGN 272
N V W T++ HG
Sbjct: 485 -NEVTWNTMISGYGLHGQ 501
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 85/176 (48%), Gaps = 3/176 (1%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
K+ +E AR +F+ MP ++ + W +I GY + ++ +FR ++ T T+L
Sbjct: 166 KFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLL 225
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
+ PA+ + ++R IH K G + H +V I Y+KCG I LF +
Sbjct: 226 DILPAVAELQELRLGMQIHSLATKTGCYS-HDYVLTGFISLYSKCGKIKMGSALFREF-- 282
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLV 204
+ ++V++ ++I G+ +G + ++ F+ + + T +S++ H L+
Sbjct: 283 RKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLI 338
>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
Length = 655
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 191/332 (57%), Gaps = 8/332 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ ++FD +P +++ +W M++ K G+LE A LF+E+P RN VSW+ ++ Y++
Sbjct: 284 VASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQA 343
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNG--DVRNCQLIHGYGEKRGFNAFH 119
N A+ +F M+A EP + T+++V A Q G DV C L Y
Sbjct: 344 NLPEEAMRIFNDMIAAG-VEPIDATLVSVLSACAQLGCLDVGRC-LYDAYIVSHKVE-LT 400
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+++SN ID +AKCG + +A +LF ++ E KN+VSW ++I A+HG +EA+ F++
Sbjct: 401 VNLSNAFIDMFAKCGDVGAASRLFRNM--EDKNVVSWNTMIVAHALHGQSEEALHLFQKF 458
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+ + + P+ +T++ VL+ACSH GLV EG F +M + P +HY C+ID+LG+ G
Sbjct: 459 KAIGIFPDEITYIGVLSACSHSGLVSEGRYHFKEMKIVYGIEPRAEHYACMIDLLGKVGL 518
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
LE+A +VA +P + W LL AC HGNVE+G+ K++ ++ G YVLM
Sbjct: 519 LEEAFEVARSMPVG-ADEAGWGALLNACRMHGNVEIGKCAADKLVGLDPSDSGIYVLMSQ 577
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
I A ++G + +R V+ +R K PG S +
Sbjct: 578 IYASKSKWGQVKMIRTVMRDRGVKKNPGCSSI 609
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 141/297 (47%), Gaps = 32/297 (10%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
++++ N ++ L AR LF+EM R+VVSWT ++DGY R + A +F RM
Sbjct: 164 QSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRVFCRM 223
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
V P+E+T++A A Q G + +++H + G +++ N L+D + KCG
Sbjct: 224 VVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVR-MSVNLENALVDMFGKCG 282
Query: 135 CIFSALKLFEDISVE-----------------------------RKNLVSWTSIISGFAM 165
C+ SA ++F+ + ++ +N VSW+ +++ ++
Sbjct: 283 CVASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQ 342
Query: 166 HGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIK 225
+ +EA+ F M ++P T +SVL+AC+ G ++ G +D + +V +
Sbjct: 343 ANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSHKVELTVN 402
Query: 226 HYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRK 282
IDM + G + A ++ + E NVV W T++ A + HG E + +K
Sbjct: 403 LSNAFIDMFAKCGDVGAASRLFRNM--EDKNVVSWNTMIVAHALHGQSEEALHLFQK 457
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 120/244 (49%), Gaps = 21/244 (8%)
Query: 47 NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLI 106
N ++ G+ R + ALALFRR++ + + AV A + + I
Sbjct: 96 NAYMLATMMRGFLRAGKPAHALALFRRVLRDRLPADARTIVFAVKAATTSSSPA---EAI 152
Query: 107 HGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 166
H KRGF + V N L+ YA + A KLF++++ +++VSWT+++ G+A
Sbjct: 153 HCVAFKRGFIGQSVLVGNALVHMYASSMSLPDARKLFDEMA--DRDVVSWTTLVDGYARG 210
Query: 167 GMGKEAVENFERMQKVVLK---PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD 223
G+ EA F RM VV PN VT ++ +A GL+ G +MV +C V
Sbjct: 211 GLPDEAWRVFCRM--VVAGGGWPNEVTLVAAASAAGQIGLLGLG-----RMVHQCVVESG 263
Query: 224 IKHY----GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERV 279
++ L+DM G+ G + A+++ G+P I +V W +++ A + G++E ++
Sbjct: 264 VRMSVNLENALVDMFGKCGCVASAKEIFDGMP--IKDVYSWTSMVSAYAKCGDLENAGKL 321
Query: 280 TRKI 283
++I
Sbjct: 322 FKEI 325
>gi|297741566|emb|CBI32698.3| unnamed protein product [Vitis vinifera]
Length = 493
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 121/317 (38%), Positives = 184/317 (58%), Gaps = 7/317 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCR-NVVSWTGIIDGYTRMNRSNGALALFRRM 74
+LV WN +I G +GEL A FEEM C ++VSW I+ R +++ L + M
Sbjct: 140 DLVAWNAIIAGFA-YGELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLM 198
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
++ P IT+ V A + + +H Y K G N V+N LID YAKCG
Sbjct: 199 CISQH-RPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNC-DTSVTNGLIDLYAKCG 256
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
+ +A K+F+ S+ ++VSW+S+I G+A G G+EA++ F+ M+++ +KPN VTF+ V
Sbjct: 257 SLKTAHKIFD--SMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGV 314
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L ACSH GLVEEG K + M +E + P +H C++D+L RAG L +AE + +
Sbjct: 315 LTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFD- 373
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLR 314
++VVW+TLL AC HGNV++G+R IL+++ +VL+ NI A + D RLR
Sbjct: 374 PDIVVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVLLCNIYASKGNWEDVARLR 433
Query: 315 RVVDERNALKFPGRSLV 331
++ +R K PG+S +
Sbjct: 434 SLMKQRGVRKVPGQSWI 450
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 118/239 (49%), Gaps = 12/239 (5%)
Query: 43 MPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRN 102
MP RNVVSWT +I GY++ + AL + +M+ P + T ++ A GD+
Sbjct: 1 MPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVM-PDQFTFGSIIKACSSLGDIGL 59
Query: 103 CQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISG 162
+ +H + K F A HI N LI Y K I AL +F ++ ++L+SW S+I+G
Sbjct: 60 GRQLHAHVLKSEFGA-HIIAQNALISMYTKSNLIIDALDVFSRMAT--RDLISWGSMIAG 116
Query: 163 FAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP 222
F+ G EA+ F+ M +P+ V + +++ ++G L + + FF++M C
Sbjct: 117 FSQLGYELEALCYFKEMLHQG-RPDLVAWNAIIAGFAYGEL-RDAIFFFEEM--RCNA-- 170
Query: 223 DIKHYGCLIDMLGRAGRLEQAEKVAS--GIPSEITNVVVWRTLLGACSFHGNVEMGERV 279
D+ + ++ R + E+ ++ I + + +LGA + ++E+G +V
Sbjct: 171 DLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQV 229
>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 116/323 (35%), Positives = 185/323 (57%), Gaps = 5/323 (1%)
Query: 9 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGAL 68
F E+ ++V M+ L G+++ AR LF+ MP R+ V+W ++ GY R+ RS AL
Sbjct: 182 FAEIVSPDVVCVTAMLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREAL 241
Query: 69 ALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLID 128
LF M SE+T+++V A Q G + +H Y RG + + L+D
Sbjct: 242 GLFDEMQKAGVAV-SEVTLVSVLTACAQMGALERGMWVHSYVCSRGMR-VSVTLGTALVD 299
Query: 129 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR 188
Y+KCG + ++++FE ++ +N+ +WTS +SG AM+GMG+E +E F+RM+ ++PN
Sbjct: 300 MYSKCGVVTMSMEVFE--TMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNG 357
Query: 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
VTF++VL CS GLVEEG FD M ++ +V P ++HYGC++D+ GRAGRL+ A +
Sbjct: 358 VTFVAVLRGCSVAGLVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFIN 417
Query: 249 GIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
+P E + VW LL A H NV++G+ K+ E+E +VL+ NI A +
Sbjct: 418 SMPVE-PHEGVWGALLNASRIHNNVDLGKHAMHKLTEIESKNDAAHVLLSNIYAESHNWK 476
Query: 309 DAERLRRVVDERNALKFPGRSLV 331
++R ++ + K PG S +
Sbjct: 477 GVSKVRNMMKSKGVKKMPGCSAI 499
>gi|356565103|ref|XP_003550784.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g47530-like [Glycine max]
Length = 515
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 182/298 (61%), Gaps = 6/298 (2%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT-EPSEITILAVFPAI 94
A +F+EMP R+ V+W +I R NR+ AL+LF + Y EP ++T L + A
Sbjct: 93 ACKVFDEMPPRDTVAWNVMISCCIRNNRTRDALSLFDVLQNSSYKCEPDDVTCLLLLQAC 152
Query: 95 WQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 154
+ + IHGY + G+ +++SN LI Y++CGC+ A ++F+ KN+V
Sbjct: 153 AHLYALEFGERIHGYMMEHGYGGA-LNLSNALISMYSRCGCLDKAXEVFKGTG--NKNVV 209
Query: 155 SWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEG-LKFFDK 213
SW+++ISG AM+G G+EA+E+FE M ++ ++P+ T VL+ACS+ G+V+EG + FFD+
Sbjct: 210 SWSAMISGLAMNGYGREAIESFEEMLRIGIRPDDQTLTGVLSACSYSGMVDEGMMSFFDR 269
Query: 214 MVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
M E V P++ HYGC++D+LG AG L++A ++ + E + WRTLLGAC HG+V
Sbjct: 270 MSREFGVTPNVHHYGCMVDLLGHAGLLDKAXQLIMSMV-EKPDSTTWRTLLGACRIHGHV 328
Query: 274 EMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+GERV ++E++ GD+VL+ NI + + +R+++ ++ PG S +
Sbjct: 329 TLGERVIGHLIELKAQEAGDHVLLLNIYSSAGHWEKVAEVRKLMKNKSIQTTPGCSTI 386
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 3/148 (2%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I+ + G L+ A +F+ +NVVSW+ +I G A+ F M+
Sbjct: 181 NALISMYSRCGCLDKAXEVFKGTGNKNVVSWSAMISGLAMNGYGREAIESFEEMLRIG-I 239
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF-HIHVSNCLIDTYAKCGCIFSA 139
P + T+ V A +G V + R F ++H C++D G + A
Sbjct: 240 RPDDQTLTGVLSACSYSGMVDEGMMSFFDRMSREFGVTPNVHHYGCMVDLLGHAGLLDKA 299
Query: 140 LKLFEDISVERKNLVSWTSIISGFAMHG 167
+L + VE+ + +W +++ +HG
Sbjct: 300 XQLIMSM-VEKPDSTTWRTLLGACRIHG 326
>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
Length = 784
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 116/320 (36%), Positives = 198/320 (61%), Gaps = 7/320 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E ++ + ++ K G++ AR +F+ +P R+VVS T II GY ++ AL LFRR
Sbjct: 143 ESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRR 202
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
+ E + +T +V A+ + + + +H + R F++ + N LID Y+KC
Sbjct: 203 LQR-EGMRSNYVTYASVLTALSGLAALDHGRQVHSH-VLRAKLPFYVVLQNSLIDMYSKC 260
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV-VLKPNRVTFL 192
G + + ++F+ S+ + ++SW +++ G++ HG+G+EAVE F+ M++ +KP+ VTFL
Sbjct: 261 GSLTYSRRIFD--SMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFL 318
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVL-PDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
+VL+ CSHGG+ + GL+ F +MV + + P+I+HYGC++D+ GRAGR+E+A + +P
Sbjct: 319 AVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMP 378
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
E T +W +LLGAC H NV +GE V R++LE+E G+YV++ N+ A R+ D
Sbjct: 379 FEPT-AAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVR 437
Query: 312 RLRRVVDERNALKFPGRSLV 331
+R ++ E+ +K PGRS +
Sbjct: 438 TVRELMKEKAVIKEPGRSWI 457
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 142/280 (50%), Gaps = 14/280 (5%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW 95
AR + +EMP RNVVSWT +I GY++ ++ AL LF M+ T P+E T V +
Sbjct: 64 ARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSG-TAPNEFTFATVLTSCT 122
Query: 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 155
+ + + IH K F + HI V + L+D YAK G I A ++F+ + +++VS
Sbjct: 123 SSSGFQLGRQIHSLVIKTSFES-HIFVGSSLLDMYAKAGKICEARRVFDGLP--ERDVVS 179
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215
T+IISG+A G+ +EA++ F R+Q+ ++ N VT+ SVL A S ++ G + ++
Sbjct: 180 CTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVL 239
Query: 216 EECEVLP-DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
LP + LIDM + G L + ++ +P V+ W +L S HG
Sbjct: 240 R--AKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPER--TVISWNAMLVGYSKHG--- 292
Query: 275 MGERVTR--KILEMERGYGGDYVLMYNILAGVWRYGDAER 312
+G K+++ E D V +L+G G +R
Sbjct: 293 LGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDR 332
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 103/227 (45%), Gaps = 8/227 (3%)
Query: 100 VRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 159
+R Q +H + K + +++ LI Y KC C+ A ++ +++ +N+VSWT++
Sbjct: 26 IREGQRVHAHMIKTCYEP-PVYLRTRLIVLYNKCRCLGDARRVLDEMP--ERNVVSWTAM 82
Query: 160 ISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECE 219
ISG++ G EA+ F M PN TF +VL +C+ + G + +V +
Sbjct: 83 ISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQ-IHSLVIKTS 141
Query: 220 VLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERV 279
I L+DM +AG++ +A +V G+P +VV ++ + G E +
Sbjct: 142 FESHIFVGSSLLDMYAKAGKICEARRVFDGLPER--DVVSCTAIISGYAQLGLDEEALDL 199
Query: 280 TRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFP 326
R++ G +YV ++L + + R+V K P
Sbjct: 200 FRRL--QREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLP 244
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 35/162 (21%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FD +PER +++WN M+ G K G A LF+ M N V
Sbjct: 268 RIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKV----------------- 310
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNG-DVRNCQLIHGY-GEKRGFNAFHIHVSN 124
+P +T LAV G + R ++ + +K GF I
Sbjct: 311 --------------KPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEP-EIEHYG 355
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 166
C++D + + G + A + + + E + W S++ +H
Sbjct: 356 CVVDLFGRAGRVEEAFEFIKKMPFEPTAAI-WGSLLGACRVH 396
>gi|115473893|ref|NP_001060545.1| Os07g0662700 [Oryza sativa Japonica Group]
gi|24414187|dbj|BAC22429.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113612081|dbj|BAF22459.1| Os07g0662700 [Oryza sativa Japonica Group]
gi|125559498|gb|EAZ05034.1| hypothetical protein OsI_27217 [Oryza sativa Indica Group]
gi|125601406|gb|EAZ40982.1| hypothetical protein OsJ_25464 [Oryza sativa Japonica Group]
Length = 544
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 189/327 (57%), Gaps = 9/327 (2%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LF+ +P VTW M+ GL + G++ AR LFEEMP R++VSW ++ G R
Sbjct: 96 RLFERVPSPTPVTWTSMVAGLCRAGDVAAARRLFEEMPVRDLVSWNAMMSGLAGNRRPVE 155
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGE-KRGFNAFHIHVSNC 125
AL LFRRM+A E P+ T+L+ A G + + IH + E KR F + +
Sbjct: 156 ALCLFRRMMA-EGFAPNRGTVLSALAACAGAGALETGKWIHAFVERKRLFRWWDEFLGTA 214
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ-KVVL 184
L+D YAKCG + AL +F + +N +W ++I+G AM+G +A++ F +M+ +
Sbjct: 215 LLDMYAKCGAVELALDVFTKL--RSRNTCTWNAMINGLAMNGYSAKALDMFRKMELDRTV 272
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
P+ VTF+ VL ACSHGG V+ G + F + ++ + ++HY C++D+L R+G L++A
Sbjct: 273 VPDEVTFVGVLLACSHGGFVDVGREHFHMIEKKYGIRLILEHYACMVDLLARSGHLQEAH 332
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
K+ +G+P + + VVWR LLG C H +V+M E I EME GD+VL+ N+ A V
Sbjct: 333 KIIAGMPMK-PDAVVWRALLGGCRLHKDVKMAETA---ISEMEATCSGDHVLLSNLYAAV 388
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
R+ E +RR + + K PG S +
Sbjct: 389 GRWSGVEDVRRTMRSKGIEKIPGCSSI 415
>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 113/327 (34%), Positives = 184/327 (56%), Gaps = 6/327 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FDE+PER++++W +I + G +E A LFE +P +++V+WT ++ G+ + +
Sbjct: 205 KVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQE 264
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN-AFHIHVSNC 125
AL F RM E+T+ A Q G + +K G++ + H+ + +
Sbjct: 265 ALEYFDRMEKSG-IRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSA 323
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVL 184
LID Y+KCG + A+ +F +S+ KN+ +++S+I G A HG +EA+ F M + +
Sbjct: 324 LIDMYSKCGNVEEAVNVF--MSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEI 381
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
KPN VTF+ L ACSH GLV++G + FD M + V P HY C++D+LGR GRL++A
Sbjct: 382 KPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEAL 441
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
++ + E + VW LLGAC H N E+ E + E+E G+Y+L+ N+ A
Sbjct: 442 ELIKTMSVE-PHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASA 500
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
+G R+R+++ E+ K P S V
Sbjct: 501 GDWGGVLRVRKLIKEKGLKKTPAVSWV 527
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 126/275 (45%), Gaps = 44/275 (16%)
Query: 35 YARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAI 94
YAR + E + RN WT +I GY + + A+A++ M E T P T A+ A
Sbjct: 101 YARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEIT-PVSFTFSALLKAC 159
Query: 95 WQNGDVRNCQLIHGYGEK-RGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI------- 146
D+ + H + RGF ++V N +ID Y KC I A K+F+++
Sbjct: 160 GTMKDLNLGRQFHAQTFRLRGF--CFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVIS 217
Query: 147 ----------------------SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
S+ K++V+WT++++GFA + +EA+E F+RM+K +
Sbjct: 218 WTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGI 277
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEV--LPDIKHY---GCLIDMLGRAGR 239
+ + VT ++AC+ G K+ D+ V+ + H LIDM + G
Sbjct: 278 RADEVTVAGYISACAQLG----ASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGN 333
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
+E+A V + ++ NV + +++ + HG +
Sbjct: 334 VEEAVNVFMSMNNK--NVFTYSSMILGLATHGRAQ 366
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 91/202 (45%), Gaps = 14/202 (6%)
Query: 78 EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIF 137
E + E+ + ++ + ++ + IHG+ ++G + ++ LI T K G
Sbjct: 40 EISNQKELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQ-SCYILTKLIRTLTKLGVPM 98
Query: 138 S--ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
A ++ E V+ +N WT++I G+A+ G EA+ + M+K + P TF ++L
Sbjct: 99 DPYARRVIE--PVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALL 156
Query: 196 NACSHGGLVEEGLKFFDKMVEE---CEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
AC + G +F + C V +IDM + ++ A KV +P
Sbjct: 157 KACGTMKDLNLGRQFHAQTFRLRGFCFVYVG----NTMIDMYVKCESIDCARKVFDEMPE 212
Query: 253 EITNVVVWRTLLGACSFHGNVE 274
+V+ W L+ A + GN+E
Sbjct: 213 R--DVISWTELIAAYARVGNME 232
>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
Length = 625
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 194/337 (57%), Gaps = 13/337 (3%)
Query: 1 FLKDGSKLFDELPERNL--VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGY 58
L D ++FD +L +WN M++G K G+LE AR +F MP R +VSW+ +ID
Sbjct: 166 MLSDARRVFDTSGATSLDAFSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDAC 225
Query: 59 TRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY--GEKRGFN 116
R + AL +F +M+ + P + + +V A G + + +H + E G +
Sbjct: 226 IRAGEFSEALRMFDQMMGNGF-RPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRS 284
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
++ + L+D Y KCGC+ A +F+ V+ +++V W ++I G AM+G GK A+E F
Sbjct: 285 PDNVMLETALVDMYCKCGCMDEAWWVFD--GVQSQDVVLWNAMIGGLAMNGHGKRALELF 342
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
RM + PN TF+ VL AC+H G V+EG + F M + + P +HYGCL D+LGR
Sbjct: 343 RRMLDMGFVPNESTFVVVLCACTHTGRVDEGKEIFRSMCDH-GIEPRREHYGCLADLLGR 401
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
AG LE+AE V +P E + W L+ +C H NV +GERV +K++E+E GG YV+
Sbjct: 402 AGLLEEAEAVLLDMPME-PHASQWGALMSSCLMHNNVGVGERVGKKLIELEPDDGGRYVV 460
Query: 297 MYNILA--GVWRYGDAERLRRVVDERNALKFPGRSLV 331
++N+ A G+W DA+ LR++++ER A K G S +
Sbjct: 461 LFNLYAVNGLWE--DAKALRKMMEERGAKKETGLSFI 495
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 44/219 (20%)
Query: 105 LIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFA 164
L HG K G A H V+NCL+ Y G + A ++F+ + SW +++SG+
Sbjct: 137 LAHGQALKHGALA-HPVVTNCLLKLYCALGMLSDARRVFDTSGATSLDAFSWNTMVSGYG 195
Query: 165 MHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKM---------V 215
G + A E F RM + L V++ ++++AC G E L+ FD+M V
Sbjct: 196 KCGDLEAAREVFVRMPERGL----VSWSAMIDACIRAGEFSEALRMFDQMMGNGFRPDAV 251
Query: 216 EECEVLPDIKHYG----------------------------CLIDMLGRAGRLEQAEKVA 247
VL H G L+DM + G +++A V
Sbjct: 252 VLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCGCMDEAWWVF 311
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM 286
G+ S+ +VV+W ++G + +G+ + + R++L+M
Sbjct: 312 DGVQSQ--DVVLWNAMIGGLAMNGHGKRALELFRRMLDM 348
>gi|357130868|ref|XP_003567066.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Brachypodium distachyon]
Length = 433
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 120/319 (37%), Positives = 191/319 (59%), Gaps = 7/319 (2%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
R+ T + +I+ K G+L+ AR +F+E P R + SW II G ++ S LALF +M
Sbjct: 119 RHPFTESALISCYSKAGDLDAARRVFDENPHRGLGSWNAIISGLSQAGESKEPLALFVKM 178
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHG-YGEKRGFNAFHIHVSNCLIDTYAKC 133
C P ++T++++ + GD+ + +H + + + + +SN LID YAKC
Sbjct: 179 RRCGVV-PDDLTMVSLVSSCCAVGDIGLVEQLHKCMLQCKHSSRLDVTLSNALIDMYAKC 237
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G A ++FE + + +++ SWT++I+G A HG + A++ F+ M+ + PNRVT L+
Sbjct: 238 GRTDLAGRVFERMPL--RDVSSWTTMITGLATHGEEQRALKKFDEMKSEGVPPNRVTMLA 295
Query: 194 VLNACSHGGLVEEGLKFFDKMVE-ECEVLPDIKHYGCLIDMLGRAGRLEQAEK-VASGIP 251
VL+AC+H GLV+ G+ +M + E +V P ++HYGCL+D+LGR G ++ A V +P
Sbjct: 296 VLSACAHRGLVDTGMGLLKQMEDGEIKVAPTVEHYGCLVDLLGRVGWVDDARALVEHRMP 355
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
E NVV+W TLLGAC HGNV +GE ++ E E G YV++ N+ A +G+ E
Sbjct: 356 ME-ANVVIWGTLLGACEKHGNVSVGEWAAERLQEAEPWNDGVYVVLSNVYAAAGMWGEVE 414
Query: 312 RLRRVVDERNALKFPGRSL 330
R+R+++ R KFPG SL
Sbjct: 415 RVRKMMSGRKVTKFPGCSL 433
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 70/183 (38%), Gaps = 46/183 (25%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++F+ +P R++ +W MITGL GE + A F+EM +S G
Sbjct: 245 RVFERMPLRDVSSWTTMITGLATHGEEQRALKKFDEM-------------------KSEG 285
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS--- 123
P+ +T+LAV A G V G G + I V+
Sbjct: 286 -------------VPPNRVTMLAVLSACAHRGLVDT-----GMGLLKQMEDGEIKVAPTV 327
Query: 124 ---NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKEAVENFE 177
CL+D + G + A L E N+V W +++ HG +G+ A E +
Sbjct: 328 EHYGCLVDLLGRVGWVDDARALVEHRMPMEANVVIWGTLLGACEKHGNVSVGEWAAERLQ 387
Query: 178 RMQ 180
+
Sbjct: 388 EAE 390
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 115/325 (35%), Positives = 192/325 (59%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++F ++P R++V+W M+ G K G +E AR +F+EMP RN+ +W+ +I+GY + N
Sbjct: 175 RIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEK 234
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+ LF M E +E +++V + G + + H Y K ++ + L
Sbjct: 235 AIDLFELMKR-EGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTV-NLILGTAL 292
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+D Y +CG I A+++FE++ K+ +SW+SII G A+HG +A+ F +M ++ P
Sbjct: 293 VDMYWRCGEIEKAIRVFEELP--DKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSP 350
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+T +VL+ACSHGGLV++GL+ ++ M + + P ++HYGC++DMLGRAG+L +AE
Sbjct: 351 RDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENF 410
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P + N + LLGAC + N E+ ERV ++E++ + G YVL+ NI A +
Sbjct: 411 ILKMPVK-PNAPILGALLGACKIYKNTEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQ 469
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ E LR ++ E+ K PG SL+
Sbjct: 470 WEKLESLRDIMKEKLVKKPPGWSLI 494
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 124/275 (45%), Gaps = 42/275 (15%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
L YA +F ++ N+ + +I ++ + A + +M+ P IT FP
Sbjct: 69 LGYAYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSR-IWPDNIT----FP 123
Query: 93 AIWQNGDVRNCQLI----HGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLF----- 143
+ + C ++ H + GF ++V N L+ YA CG I +A ++F
Sbjct: 124 FLIKASTEMECVVVGEQTHSQIVRFGFQN-DVYVENSLVHMYANCGLIAAAGRIFGQMPF 182
Query: 144 -------------------EDI-----SVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
ED + +NL +W+ +I+G+A + ++A++ FE M
Sbjct: 183 RDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELM 242
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
++ + N +SV+++C+H G +E G + + +V+ + ++ L+DM R G
Sbjct: 243 KREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKS-HMTVNLILGTALVDMYWRCGE 301
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
+E+A +V +P + + + W +++ + HG+
Sbjct: 302 IEKAIRVFEELPDK--DSLSWSSIIKGLAVHGHAH 334
>gi|297830850|ref|XP_002883307.1| hypothetical protein ARALYDRAFT_318888 [Arabidopsis lyrata subsp.
lyrata]
gi|297329147|gb|EFH59566.1| hypothetical protein ARALYDRAFT_318888 [Arabidopsis lyrata subsp.
lyrata]
Length = 523
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 125/336 (37%), Positives = 195/336 (58%), Gaps = 14/336 (4%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D K F+++PE+N W++MI+G + G++ A S+F + R++V W +I GY +
Sbjct: 193 MEDARKFFEDIPEKNSFVWSLMISGYFRIGDVHEATSVFYRVFARDLVIWNTLITGYAQN 252
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG--FNAFH 119
S A+ F M Y EP +T+ +V A Q+G + + +H ++G N F
Sbjct: 253 GYSGDAIDAFYNMQGEGY-EPDAVTVSSVLSACAQSGRLDVGREVHSLINRKGIELNQF- 310
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
VSN LID YAKCG + +A +FE +S+ ++L W S+IS A+HG G EA+E F M
Sbjct: 311 --VSNALIDMYAKCGDLENATSVFESLSL--RSLACWNSMISCLAIHGKGNEALEMFRTM 366
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+ LKP+ +TFL+VL AC HGG + EGLK F +M + +V P++KH+GCLI +LGR+G+
Sbjct: 367 GSLDLKPDEITFLAVLTACVHGGFLMEGLKIFSEMKTQ-DVKPNVKHFGCLIHLLGRSGK 425
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD----YV 295
L++A ++ +P + N V LLGAC H + E+ E+V + I+ + D
Sbjct: 426 LKEAYRLVREMPVK-PNDTVLGALLGACKVHMDTEIAEQVMKIIVTVGSITNSDCENHLA 484
Query: 296 LMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ N+ A R+ AE LR +++R K PG S V
Sbjct: 485 SISNLYAHTERWETAEALRVEMEKRGLEKSPGLSSV 520
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 132/270 (48%), Gaps = 22/270 (8%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP-CRNVVSWTGIIDGYTRMNRSN 65
K+FDE+PERN+ TWN MI G + G+ A LFEE+ CRN V+W ++ GY +
Sbjct: 102 KVFDEMPERNVATWNAMIGGYMGNGDAVSASGLFEEISVCRNTVTWIEMMKGYGKRKEIE 161
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
A LF RM + +L V+ + + D R + EK F V +
Sbjct: 162 KARELFERMPFELKNVKAWSVMLGVYVSHRKMEDAR--KFFEDIPEKNSF------VWSL 213
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
+I Y + G + A +F V ++LV W ++I+G+A +G +A++ F MQ +
Sbjct: 214 MISGYFRIGDVHEATSVF--YRVFARDLVIWNTLITGYAQNGYSGDAIDAFYNMQGEGYE 271
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFD----KMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
P+ VT SVL+AC+ G ++ G + K +E + + + LIDM + G LE
Sbjct: 272 PDAVTVSSVLSACAQSGRLDVGREVHSLINRKGIELNQFVSN-----ALIDMYAKCGDLE 326
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHG 271
A V + + ++ W +++ + HG
Sbjct: 327 NATSVFESL--SLRSLACWNSMISCLAIHG 354
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 101/228 (44%), Gaps = 24/228 (10%)
Query: 104 QLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 163
+L+H K G + + V + LI Y K GC+ SA K+F+++ +N+ +W ++I G+
Sbjct: 66 KLLHSESIKFGVCS-DVMVGSSLISMYGKWGCVVSARKVFDEMP--ERNVATWNAMIGGY 122
Query: 164 AMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD 223
+G +AV +++ + N VT++ ++ +E+ + F++M E L +
Sbjct: 123 MGNG---DAVSASGLFEEISVCRNTVTWIEMMKGYGKRKEIEKARELFERMPFE---LKN 176
Query: 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
+K + ++ + ++E A K IP + N VW ++ G+V V ++
Sbjct: 177 VKAWSVMLGVYVSHRKMEDARKFFEDIPEK--NSFVWSLMISGYFRIGDVHEATSVFYRV 234
Query: 284 LE-------------MERGYGGDYVLMYNILAGVWRYGDAERLRRVVD 318
+ GY GD + + + G DA + V+
Sbjct: 235 FARDLVIWNTLITGYAQNGYSGDAIDAFYNMQGEGYEPDAVTVSSVLS 282
>gi|414879049|tpg|DAA56180.1| TPA: hypothetical protein ZEAMMB73_301223 [Zea mays]
Length = 534
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 121/328 (36%), Positives = 189/328 (57%), Gaps = 5/328 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L ++FDE+P R+ + V+I G K G ++ AR LF++MP +++V+ T +I+GY +
Sbjct: 196 LAAACRVFDEMPTRDTASSMVLIVGYCKCGLVQNARELFDKMPTKDLVARTAMINGYAQT 255
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R ALALFR + A EP T++ V A+ Q G + Y +++ +
Sbjct: 256 GRPKVALALFRDLEAAG-IEPDGATMVGVISAVSQIGSTELAGWVGAYVDRKKIER-NEK 313
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V L+D +AKCG I AL F +I R + +T++ISG A HG A+ FERM+
Sbjct: 314 VLTALVDMHAKCGNIEQALSAFREIP--RPDAYPYTALISGLATHGHENLALSVFERMRA 371
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KP+ +TF+ VL ACSH G VE+GL++++ MV++ + HY C+IDMLGRAGR+E
Sbjct: 372 EDIKPHPITFVGVLTACSHAGNVEKGLEYWEAMVQDYGIERHADHYACVIDMLGRAGRIE 431
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++ +P + LL AC + NVE+ E V K+ E+E G+Y+L+ NI
Sbjct: 432 EAFEMVQTMPMG-PHPGALGALLSACKTYDNVEIAEVVANKLFELEPWNTGNYILLSNIY 490
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRS 329
AG + +AER+R ++ + K PG +
Sbjct: 491 AGKELWEEAERVRSLMRTKLPFKSPGST 518
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 109/266 (40%), Gaps = 54/266 (20%)
Query: 11 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALAL 70
++P + V++N ++ + + A SLF MP R VSW ++ Y S G LA
Sbjct: 143 DIPAPDAVSFNSLLCAHARNASVRPAESLFAAMPTRTQVSWNAMVVLYV----SAGDLA- 197
Query: 71 FRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTY 130
AC ++ R+ S LI Y
Sbjct: 198 ----AACR---------------VFDEMPTRDTA-----------------SSMVLIVGY 221
Query: 131 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVT 190
KCG + +A +LF+ + K+LV+ T++I+G+A G K A+ F ++ ++P+ T
Sbjct: 222 CKCGLVQNARELFDKMPT--KDLVARTAMINGYAQTGRPKVALALFRDLEAAGIEPDGAT 279
Query: 191 FLSVLNACSHGGLVE----EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ V++A S G E G K +E E K L+DM + G +EQA
Sbjct: 280 MVGVISAVSQIGSTELAGWVGAYVDRKKIERNE-----KVLTALVDMHAKCGNIEQALSA 334
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGN 272
IP + + L+ + HG+
Sbjct: 335 FREIPR--PDAYPYTALISGLATHGH 358
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 199/334 (59%), Gaps = 9/334 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKW----GELEYARSLFEEMPCRNVVSWTGIIDG 57
L +G +L ++ + L ++ GL+K G ++YA +F+EMP + SW+ ++ G
Sbjct: 123 LCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSG 182
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
Y + ++ AL LFR M A E T+ +V G + + +H Y +K G
Sbjct: 183 YAQNGQAVEALKLFREMQA-ENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVK- 240
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
+ + L+ Y+KCG + +ALK+F+ ++ +++ +W+++I+G+A+HG G++A++ F+
Sbjct: 241 IDVVLGTALVGMYSKCGSLDNALKVFQGMA--ERDVTAWSTMIAGYAIHGHGEKALQLFD 298
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
M++ PN VTF SVL+ACSH GLVE+G + F+ M E ++ P IKHYGC++D+ RA
Sbjct: 299 AMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRA 358
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297
G + A K +P E NVV+WRTLLGAC HG ++GE ++RKIL+++ +YVL+
Sbjct: 359 GMVGHAHKFIQTMPIE-PNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENYVLV 417
Query: 298 YNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
N+ A + R+ ++R ++ ++ K G S +
Sbjct: 418 SNVYASLGRWSSVCQVRSLMKDKAPKKQHGWSSI 451
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 122/259 (47%), Gaps = 10/259 (3%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G + YA +F N+ W II GY+ + A+AL+R M C + P+ T V
Sbjct: 55 GHVAYAHRIFSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGIS-PNSYTFGFV 113
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A + + Q +H K G + F + N LI YA CGC+ A +F+++
Sbjct: 114 LKACCKLLRLCEGQELHSQIVKVGLD-FETPLVNGLIKLYAACGCMDYACVMFDEMP--E 170
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
+ SW++++SG+A +G EA++ F MQ + + T SV+ C G ++ G K+
Sbjct: 171 PDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLG-KW 229
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
+++ V D+ L+ M + G L+ A KV G+ +V W T++ + H
Sbjct: 230 VHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAER--DVTAWSTMIAGYAIH 287
Query: 271 GNVEMGERVTRKILEMERG 289
G+ GE+ + M+R
Sbjct: 288 GH---GEKALQLFDAMKRS 303
>gi|354805230|gb|AER41645.1| CRR4 [Oryza punctata]
Length = 632
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/325 (35%), Positives = 189/325 (58%), Gaps = 4/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+FD + ++++V+W M++ K G+L+ A+ LF+ MP +N+VSW +I GY +R +
Sbjct: 264 SVFDRMDQKDVVSWTAMVSAYAKIGDLDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDE 323
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL F+ M+ P E T+++V A Q G V C I + K + + + N L
Sbjct: 324 ALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNTH-LTVALGNAL 382
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID +AKCG + A +F +E + +++WT++ISGFA +G+ +EA+ + M + ++
Sbjct: 383 IDMFAKCGDVGRAQSIF--YKMETRCIITWTTMISGFAFNGLCREALLVYNNMCREGVEL 440
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ F++ L AC+HGGL++EG F++MVE+ + P ++HYGC++D+LGRAG L++A
Sbjct: 441 DGTVFIAALAACTHGGLLQEGWSIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAILF 500
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E +VV+W TLL +C HGN E+ E V++KI E+E VL+ N A R
Sbjct: 501 IESMPLE-PSVVIWVTLLSSCVAHGNAELIEYVSKKITELEPFNSSYQVLVSNCSALEGR 559
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ R + K PG SL+
Sbjct: 560 WDGVIGARTSMRNWGIEKVPGSSLI 584
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 123/265 (46%), Gaps = 47/265 (17%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LF+ +PERN+V+WN ++ G + G++ AR++F+ MP RN VSW +I GY A
Sbjct: 203 LFEAMPERNVVSWNTVVAGFARTGDMVTARTVFDRMPSRNAVSWNLMISGYATSGDVEAA 262
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
++F RM DV + ++
Sbjct: 263 RSVFDRM---------------------DQKDVVSW--------------------TAMV 281
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ-KVVLKP 186
YAK G + +A +LF+ + V KNLVSW ++I+G+ + EA+ F+ M + +P
Sbjct: 282 SAYAKIGDLDTAKELFDHMPV--KNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRP 339
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ T +SV++AC+ G VE + + + + LIDM + G + +A+ +
Sbjct: 340 DEATLVSVVSACAQLGSVEY-CNWISSFIGKSNTHLTVALGNALIDMFAKCGDVGRAQSI 398
Query: 247 ASGIPSEITNVVVWRTLLGACSFHG 271
+ E ++ W T++ +F+G
Sbjct: 399 FYKM--ETRCIITWTTMISGFAFNG 421
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 110/266 (41%), Gaps = 51/266 (19%)
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC-------- 133
P+ T + A G R C +HG + GF + + V N L+D Y +C
Sbjct: 108 PNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGS-DVFVQNALMDVYYRCGGGGAGGV 166
Query: 134 ----------------------------GCIFSALKLFEDISVERKNLVSWTSIISGFAM 165
G A+ LFE ++ +N+VSW ++++GFA
Sbjct: 167 GAARQVFDEMVDKDVVSWNSIVGVYMSSGDATGAMGLFE--AMPERNVVSWNTVVAGFAR 224
Query: 166 HGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIK 225
G A F+RM N V++ +++ + G VE FD+M ++ D+
Sbjct: 225 TGDMVTARTVFDRMP----SRNAVSWNLMISGYATSGDVEAARSVFDRMDQK-----DVV 275
Query: 226 HYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
+ ++ + G L+ A+++ +P + N+V W ++ + + + R T +++
Sbjct: 276 SWTAMVSAYAKIGDLDTAKELFDHMP--VKNLVSWNAMITGYNHNSRYDEALR-TFQLMM 332
Query: 286 MERGYGGDYVLMYNILAGVWRYGDAE 311
+E + D + ++++ + G E
Sbjct: 333 LEGRFRPDEATLVSVVSACAQLGSVE 358
>gi|10178273|emb|CAC08331.1| putative protein [Arabidopsis thaliana]
Length = 1280
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 114/325 (35%), Positives = 189/325 (58%), Gaps = 3/325 (0%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
KLFDE+P +NLVTWN ++ K G++ AR +F+EM R+VV+W+ +IDGY + N
Sbjct: 910 KLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNK 969
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL +F +M+ ++ +E+T+++V A G + + +H Y + + L
Sbjct: 970 ALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHL-PLTVILQTSL 1028
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YAKCG I A +F SV+ + + W +II G A HG +E+++ F +M++ + P
Sbjct: 1029 IDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDP 1088
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +TFL +L ACSHGGLV+E FF K ++E P +HY C++D+L RAG ++ A
Sbjct: 1089 DEITFLCLLAACSHGGLVKEAWHFF-KSLKESGAEPKSEHYACMVDVLSRAGLVKDAHDF 1147
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
S +P + T ++ LL C HGN+E+ E V +K++E++ G YV + N+ A +
Sbjct: 1148 ISEMPIKPTGSMLG-ALLNGCINHGNLELAETVGKKLIELQPHNDGRYVGLANVYAINKQ 1206
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ A +R ++++ K G S++
Sbjct: 1207 FRAARSMREAMEKKGVKKIAGHSIL 1231
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 5/183 (2%)
Query: 47 NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLI 106
++V+ T IDG + + L LFR + A + P I + A+ + ++
Sbjct: 578 HMVASTAAIDGLIKNEGVDRGLELFRDICANGHC-PDVIAYHVLIKALCKACRTMEADIL 636
Query: 107 HGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN--LVSWTSIISGFA 164
+G + N +ID + K G I L + + KN ++++TS+I G
Sbjct: 637 FNEMVSKGLKP-TVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLC 695
Query: 165 MHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDI 224
G EA+ + M+ PNR+TF++++ G E L +F +M EE E+ PD
Sbjct: 696 ASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGLCKCGWSGEALVYFREM-EEKEMEPDS 754
Query: 225 KHY 227
Y
Sbjct: 755 AVY 757
>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Vitis vinifera]
Length = 1053
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/320 (36%), Positives = 198/320 (61%), Gaps = 7/320 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E ++ + ++ K G++ AR +F+ +P R+VVS T II GY ++ AL LFRR
Sbjct: 610 ESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRR 669
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
+ E + +T +V A+ + + + +H + R F++ + N LID Y+KC
Sbjct: 670 LQR-EGMRSNYVTYASVLTALSGLAALDHGRQVHSH-VLRAKLPFYVVLQNSLIDMYSKC 727
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFL 192
G + + ++F+ S+ + ++SW +++ G++ HG+G+EAVE F+ M ++ +KP+ VTFL
Sbjct: 728 GSLTYSRRIFD--SMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFL 785
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVL-PDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
+VL+ CSHGG+ + GL+ F +MV + + P+I+HYGC++D+ GRAGR+E+A + +P
Sbjct: 786 AVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMP 845
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
E T +W +LLGAC H NV +GE V R++LE+E G+YV++ N+ A R+ D
Sbjct: 846 FEPT-AAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVR 904
Query: 312 RLRRVVDERNALKFPGRSLV 331
+R ++ E+ +K PGRS +
Sbjct: 905 TVRELMKEKAVIKEPGRSWI 924
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 142/280 (50%), Gaps = 14/280 (5%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW 95
AR + +EMP RNVVSWT +I GY++ ++ AL LF M+ T P+E T V +
Sbjct: 531 ARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSG-TAPNEFTFATVLTSCT 589
Query: 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 155
+ + + IH K F + HI V + L+D YAK G I A ++F+ + +++VS
Sbjct: 590 SSSGFQLGRQIHSLVIKTSFES-HIFVGSSLLDMYAKAGKICEARRVFDGLP--ERDVVS 646
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215
T+IISG+A G+ +EA++ F R+Q+ ++ N VT+ SVL A S ++ G + ++
Sbjct: 647 CTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVL 706
Query: 216 EECEVLP-DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
LP + LIDM + G L + ++ +P V+ W +L S HG
Sbjct: 707 R--AKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPER--TVISWNAMLVGYSKHG--- 759
Query: 275 MGERVTR--KILEMERGYGGDYVLMYNILAGVWRYGDAER 312
+G K+++ E D V +L+G G +R
Sbjct: 760 LGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDR 799
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 103/227 (45%), Gaps = 8/227 (3%)
Query: 100 VRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 159
+R Q +H + K + +++ LI Y KC C+ A ++ +++ +N+VSWT++
Sbjct: 493 IREGQRVHAHMIKTCYEP-PVYLRTRLIVLYNKCRCLGDARRVLDEMP--ERNVVSWTAM 549
Query: 160 ISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECE 219
ISG++ G EA+ F M PN TF +VL +C+ + G + +V +
Sbjct: 550 ISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQ-IHSLVIKTS 608
Query: 220 VLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERV 279
I L+DM +AG++ +A +V G+P +VV ++ + G E +
Sbjct: 609 FESHIFVGSSLLDMYAKAGKICEARRVFDGLPER--DVVSCTAIISGYAQLGLDEEALDL 666
Query: 280 TRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFP 326
R++ G +YV ++L + + R+V K P
Sbjct: 667 FRRL--QREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLP 711
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 35/162 (21%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FD +PER +++WN M+ G K G A LF+ M N V
Sbjct: 735 RIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKV----------------- 777
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNG-DVRNCQLIHGY-GEKRGFNAFHIHVSN 124
+P +T LAV G + R ++ + +K GF I
Sbjct: 778 --------------KPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEP-EIEHYG 822
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 166
C++D + + G + A + + + E + W S++ +H
Sbjct: 823 CVVDLFGRAGRVEEAFEFIKKMPFEPTAAI-WGSLLGACRVH 863
>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
Length = 607
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/296 (38%), Positives = 176/296 (59%), Gaps = 5/296 (1%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW 95
AR++F+ M +VV+W+ +I GY R S+ A+ LFR M A P E+T++ V A
Sbjct: 188 ARNVFDRMDKSSVVTWSAMIGGYVRGGLSSDAVGLFREMQA-SGVRPDEVTVIGVLAAAA 246
Query: 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 155
G + + + + E+ G + + N LID AKCG + A+ +F+ + E + +VS
Sbjct: 247 DLGALELARWVGRFVEREGIGK-SVTLCNALIDALAKCGDVDGAVAVFQGM--EERTVVS 303
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215
WTS+I AM G GKEAV FE M+ ++P+ V F+ VL ACSH G+V+EG +FD M
Sbjct: 304 WTSVIDALAMEGRGKEAVAVFEAMKTAGVRPDDVVFIGVLTACSHAGMVDEGYGYFDSMK 363
Query: 216 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEM 275
E + P I+HYGC++DM GRAG +E+A + +P + N ++WRTL+ AC HG +E+
Sbjct: 364 MEYGIDPKIEHYGCMVDMFGRAGMVERAMEFIHTMPMK-PNPIIWRTLVAACRAHGRLEL 422
Query: 276 GERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
GE +TR +L + +YV++ N+ A R+ + +RR + +R K PG SLV
Sbjct: 423 GESITRNLLNEYPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLV 478
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 14/159 (8%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
+++ N +I L K G+++ A ++F+ M R VVSWT +ID R A+A+F M
Sbjct: 268 KSVTLCNALIDALAKCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEGRGKEAVAVFEAM 327
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGE------KRGFNAFHIHVSNCLID 128
P ++ + V A G V GYG + G + I C++D
Sbjct: 328 KTAG-VRPDDVVFIGVLTACSHAGMVDE-----GYGYFDSMKMEYGIDP-KIEHYGCMVD 380
Query: 129 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 167
+ + G + A++ + + + N + W ++++ HG
Sbjct: 381 MFGRAGMVERAMEFIHTMPM-KPNPIIWRTLVAACRAHG 418
>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 500
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 196/330 (59%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ ++FD + R++ +W ++ ++ AR +F+EMP R+V+S++ +I Y R
Sbjct: 139 MDSARRVFDGMGYRDIASWTTLLACYANSCSVKAARKVFDEMPERSVISYSAMIAAYVRG 198
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
NR AL LFR + + + EPS+ +++V A G + + ++ Y + +
Sbjct: 199 NRFREALDLFRELFSVK-IEPSDSCVMSVLCACANLGALDVGRWVYSYVCQSKGDYVDSR 257
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
++ LID + KCG I AL +FE + K++ WT+++SG AMHG+G++ +E FE+M
Sbjct: 258 IATALIDMFFKCGSIEHALLVFE--GAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVD 315
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPN VTF+++L+ CSH GLV EGL +FD+M + V P ++H+GC++D+LGRAG ++
Sbjct: 316 SGVKPNGVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVEPTVEHFGCVVDLLGRAGLID 375
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
QA ++ S +P E N +W +LL AC + NVE+GE + +++ E G Y+ + ++
Sbjct: 376 QAMQLISEMPFE-PNAAIWGSLLNACRVYKNVEIGELAAQWLIKDEPWNGALYMTLLSLY 434
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
R+ + E+++ + E K PG SL+
Sbjct: 435 REAGRWDEVEKVKLKMKEVGCRKGPGCSLI 464
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 117/312 (37%), Positives = 187/312 (59%), Gaps = 5/312 (1%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I K G++E A LFE + C++VVSW +I GYT N AL LF+ M+
Sbjct: 239 NALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGEC 298
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH-IHVSNCLIDTYAKCGCIFSA 139
P+++T+L+V PA G + + IH Y +K+ + + LID YAKCG I +A
Sbjct: 299 -PNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAA 357
Query: 140 LKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS 199
++F S+ ++L SW ++I GFAMHG A + F RM+ ++P+ +TF+ +L+ACS
Sbjct: 358 HQVFN--SMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACS 415
Query: 200 HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVV 259
H GL++ G + F M ++ + P ++HYGC+ID+LG +G ++AE++ +P E + V+
Sbjct: 416 HSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPME-PDGVI 474
Query: 260 WRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319
W +LL AC HGN+E+ E +K++++E G YVL+ NI A R+ D R+R V++
Sbjct: 475 WCSLLKACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNG 534
Query: 320 RNALKFPGRSLV 331
+ K PG S +
Sbjct: 535 KGMKKVPGCSSI 546
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 147/277 (53%), Gaps = 15/277 (5%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+D K+FD R++V+ +ITG G+ AR +F+E+ R+VVSW +I GY
Sbjct: 115 LEDARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVEN 174
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY----GEKRGFNA 117
R AL LF+ M+ P E T+++V A Q+G + + +H + + GF++
Sbjct: 175 GRYEEALELFKEMMRTN-VRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSS 233
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
+ + N LID Y+KCG + +A LFE +S K++VSW ++I G+ + KEA+ F+
Sbjct: 234 -SLKIVNALIDLYSKCGDVETAFGLFEGLSC--KDVVSWNTLIGGYTHTNLYKEALLLFQ 290
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGL---KFFDKMVEECEVLPDIKHYGCLIDML 234
M + PN VT LSVL AC+H G ++ G + DK ++ V + LIDM
Sbjct: 291 EMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLK--GVTNETSLRTSLIDMY 348
Query: 235 GRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ G +E A +V + + ++ W ++ + HG
Sbjct: 349 AKCGDIEAAHQVFNSMLYR--SLSSWNAMIFGFAMHG 383
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 129/273 (47%), Gaps = 37/273 (13%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVAC-----EYTEPSEITI 87
L YA S+FE + N++ W ++ G+ + AL ++ RMV+ Y+ P +
Sbjct: 14 LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKS 73
Query: 88 LAVFPAIWQNGDVR--------------NCQLIHGYGEKRGFN--------AFHIHVSNC 125
A A + + + LI Y G + H V +C
Sbjct: 74 CAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSC 133
Query: 126 --LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
LI YA G SA K+F++I+ +++VSW ++I+G+ +G +EA+E F+ M +
Sbjct: 134 TALITGYASRGDFRSARKVFDEIT--ERDVVSWNAMITGYVENGRYEEALELFKEMMRTN 191
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEV---LPDIKHYGCLIDMLGRAGRL 240
++P+ T +SV++AC+ G +E G + + ++ + +K LID+ + G +
Sbjct: 192 VRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDV 251
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
E A + G+ + +VV W TL+G + H N+
Sbjct: 252 ETAFGLFEGLSCK--DVVSWNTLIGGYT-HTNL 281
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 5/149 (3%)
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198
A+ +FE +++ NL+ W +++ G A A+E + RM + PN +F +L +C
Sbjct: 17 AISVFE--TIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSC 74
Query: 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
+ EEG + ++++ L H LI M R G LE A KV S +VV
Sbjct: 75 AKSKAFEEGRQIHAQVLKLGCGLDRYVHTS-LISMYARNGGLEDARKVFDA--SSHRDVV 131
Query: 259 VWRTLLGACSFHGNVEMGERVTRKILEME 287
L+ + G+ +V +I E +
Sbjct: 132 SCTALITGYASRGDFRSARKVFDEITERD 160
>gi|297846530|ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336988|gb|EFH67405.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 554
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 187/332 (56%), Gaps = 6/332 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L +FD + ++N+ W M++G V G + AR LFE P ++VV WT +++GY +
Sbjct: 182 LDKARAIFDSMRDKNVKCWTSMVSGYVSNGRTDEARELFERSPVKDVVLWTAMMNGYVQF 241
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
NR + AL LFR M P ++++ Q G + + IHGY + +
Sbjct: 242 NRFDEALELFRCMQTAR-IRPDNFVLVSLLTGCAQTGALEQGKWIHGYIRENRVTVDKV- 299
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V L+D YAKCGCI +AL +F ++ + ++ SWTS+I G A +GM A++ + M+
Sbjct: 300 VGTALVDMYAKCGCIETALGVFYEM--KERDTASWTSLIYGLATNGMSGRALDLYYEMEN 357
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
V ++ + +TF++VL ACSHGG V EG + F M E ++ P +HY CLID+L RAG L+
Sbjct: 358 VGVRLDDITFVAVLTACSHGGFVAEGRRIFYSMTERHKIQPKSEHYSCLIDLLCRAGLLD 417
Query: 242 QAEKVASGIPSE--ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
+AE++ + E T V V+ +LL A +GNV++ ERV K+ ++E + L+ +
Sbjct: 418 EAEELIDKMHGERDKTLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLAS 477
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ A R+ D +RR + + KFPG S +
Sbjct: 478 VYASANRWEDVTNVRRKMKDLGIRKFPGCSSI 509
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 117/263 (44%), Gaps = 40/263 (15%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E + N ++ G++E +F+EMP R+VVSW G+I Y R A+++F+R
Sbjct: 62 ESDSYVCNSLMGMYAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQR 121
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV--SNCLIDTYA 131
M + E TI++ A ++ + I+ Y F + V N L+D +
Sbjct: 122 MSRESNLKADEGTIVSTLSACSVLKNLEIGERIYRY----VVTEFEMSVRTGNALVDMFC 177
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER------------- 178
KCGC+ A +F+ S+ KN+ WTS++SG+ +G EA E FER
Sbjct: 178 KCGCLDKARAIFD--SMRDKNVKCWTSMVSGYVSNGRTDEARELFERSPVKDVVLWTAMM 235
Query: 179 ------------------MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEV 220
MQ ++P+ +S+L C+ G +E+G K+ + E V
Sbjct: 236 NGYVQFNRFDEALELFRCMQTARIRPDNFVLVSLLTGCAQTGALEQG-KWIHGYIRENRV 294
Query: 221 LPDIKHYGCLIDMLGRAGRLEQA 243
D L+DM + G +E A
Sbjct: 295 TVDKVVGTALVDMYAKCGCIETA 317
>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 570
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 188/332 (56%), Gaps = 6/332 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L +FD + ++N+ W M+ G V G ++ AR LFE P ++VV WT +++GY +
Sbjct: 198 LDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQF 257
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
NR + AL LFR M P ++++ Q G + + IHGY + +
Sbjct: 258 NRFDEALELFRCMQTAG-IRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKV- 315
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V L+D YAKCGCI +AL++F +I + ++ SWTS+I G AM+GM A++ + M+
Sbjct: 316 VGTALVDMYAKCGCIETALEVFYEI--KERDTASWTSLIYGLAMNGMSGRALDLYYEMEN 373
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
V ++ + +TF++VL AC+HGG V EG K F M E V P +H CLID+L RAG L+
Sbjct: 374 VGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLCRAGLLD 433
Query: 242 QAEKVASGI--PSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
+AE++ + S+ T V V+ +LL A +GNV++ ERV K+ ++E + L+ +
Sbjct: 434 EAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLAS 493
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ A R+ D +RR + + KFPG S +
Sbjct: 494 VYASANRWEDVTNVRRKMKDLGIRKFPGCSSI 525
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 128/296 (43%), Gaps = 37/296 (12%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ G++E +F+EMP R+VVSW G+I Y R A+ +F+RM
Sbjct: 85 NSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNL 144
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+ E TI++ A ++ + I+ + + + N L+D + KCGC+ A
Sbjct: 145 KFDEGTIVSTLSACSALKNLEIGERIYRFVVTEF--EMSVRIGNALVDMFCKCGCLDKAR 202
Query: 141 KLFED----------------ISVER-------------KNLVSWTSIISGFAMHGMGKE 171
+F+ +S R K++V WT++++G+ E
Sbjct: 203 AVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDE 262
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLI 231
A+E F MQ ++P+ +S+L C+ G +E+G K+ + E V D L+
Sbjct: 263 ALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQG-KWIHGYINENRVTVDKVVGTALV 321
Query: 232 DMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME 287
DM + G +E A +V I T W +L+ + +G M R EME
Sbjct: 322 DMYAKCGCIETALEVFYEIKERDT--ASWTSLIYGLAMNG---MSGRALDLYYEME 372
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 113/227 (49%), Gaps = 14/227 (6%)
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
P T+ V +I + V + +HGY K G F +VSN L+ YA G I K
Sbjct: 44 PDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKAGLE-FDSYVSNSLMGMYASLGKIEITHK 102
Query: 142 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFLSVLNACSH 200
+F+++ ++++VSW +IS + +G ++A+ F+RM Q+ LK + T +S L+ACS
Sbjct: 103 VFDEMP--QRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSA 160
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
+E G + + +V E E+ ++ L+DM + G L++A V + + NV W
Sbjct: 161 LKNLEIGERIYRFVVTEFEM--SVRIGNALVDMFCKCGCLDKARAVFDSMRDK--NVKCW 216
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+++ G V G R+ + ER D VL ++ G ++
Sbjct: 217 TSMV-----FGYVSTG-RIDEARVLFERSPVKDVVLWTAMMNGYVQF 257
>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
Length = 587
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 112/302 (37%), Positives = 180/302 (59%), Gaps = 5/302 (1%)
Query: 30 WGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILA 89
+G+ + A LF EMPCR+VVSW ++ Y + + N ALALF +M A +P+E T+++
Sbjct: 161 FGKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVG-VKPTEATVVS 219
Query: 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE 149
+ A G + +H Y I V L+D YAKCG I A ++F ++E
Sbjct: 220 LLSACAHLGALDKGLHLHTYINDNRIEVNSI-VGTALVDMYAKCGKISLATQVFN--AME 276
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
K++++W +II+G A+HG KEA F+ M++ ++PN +TF+++L+ACSH G+V+EG K
Sbjct: 277 SKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQK 336
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
D M + P ++HYGC+ID+L RAG LE+A ++ +P E N LLG C
Sbjct: 337 LLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPME-PNPCALGALLGGCRI 395
Query: 270 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
HGN E+GE V ++++ ++ + G Y+L+ NI A ++ DA ++R ++ K PG S
Sbjct: 396 HGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVS 455
Query: 330 LV 331
++
Sbjct: 456 VI 457
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 4/159 (2%)
Query: 10 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALA 69
D E N + ++ K G++ A +F M ++V++W II G A
Sbjct: 242 DNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQR 301
Query: 70 LFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQ-LIHGYGEKRGFNAFHIHVSNCLID 128
LF+ M EP++IT +A+ A G V Q L+ G H C+ID
Sbjct: 302 LFKEMKEAG-VEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYG-CVID 359
Query: 129 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 167
A+ G + A++L + +E N + +++ G +HG
Sbjct: 360 LLARAGLLEEAMELIGTMPME-PNPCALGALLGGCRIHG 397
>gi|242032157|ref|XP_002463473.1| hypothetical protein SORBIDRAFT_01g000443 [Sorghum bicolor]
gi|241917327|gb|EER90471.1| hypothetical protein SORBIDRAFT_01g000443 [Sorghum bicolor]
Length = 438
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 170/290 (58%), Gaps = 4/290 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ FD +P+RN+V+WN M+ G L AR LF+ MP RN +W+ ++ G
Sbjct: 151 LQRARHFFDAMPDRNVVSWNAMLGAYASAGMLSQARDLFDAMPQRNAATWSSMLTGLVLS 210
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R AL +F MV P+E +++V A Q + +HGY E+ A +
Sbjct: 211 GRCGEALRVFHDMVRSGAV-PNEPALVSVVSACAQLRSLEYGAWVHGYAEQELQGAMSVI 269
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+++ +ID Y KCG I SA+++F + V +N+ SW ++I+G AM+G ++A+ +MQ
Sbjct: 270 LASAIIDMYGKCGGIHSAVRVFAAMPV--RNVYSWNAMIAGLAMNGGERQALSLLWKMQM 327
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++PN +TF+ +L+ACSH GLV EG + FD M+E+ + P HYG ++D++GR+GR++
Sbjct: 328 AGVRPNDITFIGLLSACSHSGLVNEGRRLFDSMIEDFGIQPVQHHYGLMVDLIGRSGRVK 387
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG 291
+A +P E + +W L AC HG VE+GE V +K++E+E +G
Sbjct: 388 EALFFVKSMPVE-PHPGLWGALASACKMHGEVELGEEVAKKLIELEPRHG 436
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 92/243 (37%), Gaps = 70/243 (28%)
Query: 105 LIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE--------------- 149
L H + G +A ++V+N I +Y + SA +LF ++S +
Sbjct: 87 LFHSLALRLG-HARDVYVANAAISSYFAASDVASADRLFAELSADDVADVVTWTTMVTGH 145
Query: 150 -----------------RKNLVSWTSIISGFAMHGMGKEAVENFERMQK----------- 181
+N+VSW +++ +A GM +A + F+ M +
Sbjct: 146 ANATNLQRARHFFDAMPDRNVVSWNAMLGAYASAGMLSQARDLFDAMPQRNAATWSSMLT 205
Query: 182 -VVLK-------------------PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVL 221
+VL PN +SV++AC+ +E G +E +
Sbjct: 206 GLVLSGRCGEALRVFHDMVRSGAVPNEPALVSVVSACAQLRSLEYGAWVHGYAEQELQGA 265
Query: 222 PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTR 281
+ +IDM G+ G + A +V + +P + NV W ++ + +G GER
Sbjct: 266 MSVILASAIIDMYGKCGGIHSAVRVFAAMP--VRNVYSWNAMIAGLAMNG----GERQAL 319
Query: 282 KIL 284
+L
Sbjct: 320 SLL 322
>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Glycine max]
Length = 629
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 190/332 (57%), Gaps = 9/332 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+D K+FD +PER++V VMI G +E A +F EM R+ V WT +IDG R
Sbjct: 176 LEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRN 235
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF--NAFH 119
N L +FR M + EP+E+T + V A Q G + + IH Y K G N F
Sbjct: 236 GEFNRGLEVFREM-QVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRF- 293
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
V+ LI+ Y++CG I A LF+ + V K++ ++ S+I G A+HG EAVE F M
Sbjct: 294 --VAGALINMYSRCGDIDEAQALFDGVRV--KDVSTYNSMIGGLALHGKSIEAVELFSEM 349
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
K ++PN +TF+ VLNACSHGGLV+ G + F+ M + P+++HYGC++D+LGR GR
Sbjct: 350 LKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCMVDILGRVGR 409
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
LE+A + E + ++ +LL AC H N+ MGE+V + + E R G ++++ N
Sbjct: 410 LEEAFDFIGRMGVEADDKMLC-SLLSACKIHKNIGMGEKVAKLLSEHYRIDSGSFIMLSN 468
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + R+ A +R +++ +K PG S +
Sbjct: 469 FYASLGRWSYAAEVREKMEKGGIIKEPGCSSI 500
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 33/184 (17%)
Query: 102 NCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 161
+C I + F AF L+ Y K I A+KLF + N+ +TS+I
Sbjct: 47 HCHAIKTRTSQDPFVAFE------LLRVYCKVNYIDHAIKLFR--CTQNPNVYLYTSLID 98
Query: 162 GFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC-----------SHGGLVEEGLKF 210
GF G +A+ F +M + + + ++L AC HG +++ GL
Sbjct: 99 GFVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGL 158
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
+ + L+++ G+ G LE A K+ G+P +VV ++G+C
Sbjct: 159 DRSIALK------------LVELYGKCGVLEDARKMFDGMPER--DVVACTVMIGSCFDC 204
Query: 271 GNVE 274
G VE
Sbjct: 205 GMVE 208
>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/328 (35%), Positives = 185/328 (56%), Gaps = 9/328 (2%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FDE+P + V+W+VMI+G K G+++ AR F+E P ++ W +I GY + +
Sbjct: 162 VFDEMPRLSAVSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMISGYVQNSCFKEG 221
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LFR ++ + P E +++ A G + IH Y ++ + I +S L+
Sbjct: 222 LYLFR-LLQLTHVVPDESIFVSILSACAHLGALDIGIWIHRYLNRKTV-SLSIRLSTSLL 279
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D YAKCG + A +LF+ S+ +++V W ++ISG AMHG G A++ F M+K +KP+
Sbjct: 280 DMYAKCGNLELAKRLFD--SMPERDIVCWNAMISGLAMHGDGASALKMFSEMEKTGIKPD 337
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TF++V ACS+ G+ EGL+ DKM E+ P +HYGCL+D+L RAG +A +
Sbjct: 338 DITFIAVFTACSYSGMAHEGLQLLDKMSSLYEIEPKSEHYGCLVDLLSRAGLFGEAMVMI 397
Query: 248 SGIPSEITN----VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
I S N + WR L AC HG ++ ER +++L +E + G YVL+ N+ A
Sbjct: 398 RRITSTSWNGSEETLAWRAFLSACCNHGQAQLAERAAKRLLRLE-NHSGVYVLLSNLYAA 456
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
++ DA R+R ++ + K PG S V
Sbjct: 457 SGKHSDARRVRNMMRNKGVDKAPGCSSV 484
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 137/325 (42%), Gaps = 42/325 (12%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G L YA +FE + + II + G +F +M+ P TI V
Sbjct: 53 GSLTYACRVFERIHHPTLCICNTIIKTFLVNGNFYGTFHVFTKMLH-NGLGPDNYTIPYV 111
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A D +++HGY K G F I V N L+ Y+ CG + +A +F+++ R
Sbjct: 112 LKACAALRDCSLGKMVHGYSSKLGL-VFDIFVGNSLMAMYSVCGDVIAARHVFDEM--PR 168
Query: 151 KNLVSWTSIISGFAMHG-------------------------------MGKEAVENFERM 179
+ VSW+ +ISG+A G KE + F +
Sbjct: 169 LSAVSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMISGYVQNSCFKEGLYLFRLL 228
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
Q + P+ F+S+L+AC+H G ++ G+ + + + V I+ L+DM + G
Sbjct: 229 QLTHVVPDESIFVSILSACAHLGALDIGI-WIHRYLNRKTVSLSIRLSTSLLDMYAKCGN 287
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER-GYGGDYVLMY 298
LE A+++ +P ++V W ++ + HG+ G + EME+ G D +
Sbjct: 288 LELAKRLFDSMPER--DIVCWNAMISGLAMHGD---GASALKMFSEMEKTGIKPDDITFI 342
Query: 299 NILAGVWRYGDAERLRRVVDERNAL 323
+ G A +++D+ ++L
Sbjct: 343 AVFTACSYSGMAHEGLQLLDKMSSL 367
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 79/203 (38%), Gaps = 38/203 (18%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ +LFD +PER++V WN MI+GL G+ A +F EM TGI
Sbjct: 288 LELAKRLFDSMPERDIVCWNAMISGLAMHGDGASALKMFSEM------EKTGI------- 334
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRN-CQLIHGYGEKRGFNAFHI 120
+P +IT +AVF A +G QL+
Sbjct: 335 -------------------KPDDITFIAVFTACSYSGMAHEGLQLLDKMSSLYEIEPKSE 375
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKN----LVSWTSIISGFAMHGMGKEAVENF 176
H CL+D ++ G A+ + I+ N ++W + +S HG + A
Sbjct: 376 HY-GCLVDLLSRAGLFGEAMVMIRRITSTSWNGSEETLAWRAFLSACCNHGQAQLAERAA 434
Query: 177 ERMQKVVLKPNRVTFLSVLNACS 199
+R+ ++ LS L A S
Sbjct: 435 KRLLRLENHSGVYVLLSNLYAAS 457
>gi|357126462|ref|XP_003564906.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 582
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 121/325 (37%), Positives = 181/325 (55%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFDE P R+LV W MI G + G ++ AR+LFEEMP RNV+SW+ ++DGY R +
Sbjct: 227 ELFDETPNRDLVCWCSMIDGYARQGRMDEARALFEEMPERNVISWSIVVDGYVRCGEPSE 286
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL LF+RM+ C +P + + F A Q G + + +H Y EK+ F + V L
Sbjct: 287 ALELFQRMLRCG-IKPDRVAAVGAFTACAQLGALEQGRWLHSYLEKKKV-LFDVVVQTAL 344
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y KCG + +FE S+ K++V+W +I G H G AV+ F +M+
Sbjct: 345 IDMYMKCGRLDLGKLIFE--SMPDKSVVTWNVMIIGLGTHSCGLHAVKLFYQMEAEGAPI 402
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ ++ L+VL AC+H GL+ EGL F +M ++ + P ++HYG L+D+LGRAG L+ A
Sbjct: 403 DDLSVLAVLTACTHAGLISEGLGIFHRMRKDFGMDPKVEHYGALVDLLGRAGHLDHARHA 462
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E T +W +LL AC H VE+ E ++ + G YVL+ NI A
Sbjct: 463 IETMPMEPTP-ELWGSLLAACRSHRCVELAELSVERLASLGADDFGVYVLLSNIYADEGM 521
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ R+RR++ K GRS++
Sbjct: 522 WDGVFRIRRLMSAEGMKKDIGRSVI 546
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 94/223 (42%), Gaps = 27/223 (12%)
Query: 46 RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQL 105
R+ W +I + + N ALA F M EP T FPA+ + L
Sbjct: 76 RDAFPWNTLIRLHAPASPRN-ALAYFACMRRAA-VEPDAYT----FPAVLKACACGVLGL 129
Query: 106 -IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFA 164
+H + G + + N L+ Y + G S K+F+ + ++LVSW S+++G+
Sbjct: 130 PVHAEAVRTGMDG-DLFTRNALVSFYCRIGDCRSGRKVFDHGA---RDLVSWNSMVAGYV 185
Query: 165 MHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHG---GLVEEGLKFFDKMVEECEVL 221
G + A E F+ M P R F ++G G V+ + FD+
Sbjct: 186 ACGELELAQELFDGM------PLRDAFSWATMIDAYGKRSGGVDRARELFDETPNR---- 235
Query: 222 PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
D+ + +ID R GR+++A + +P NV+ W ++
Sbjct: 236 -DLVCWCSMIDGYARQGRMDEARALFEEMPER--NVISWSIVV 275
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 121/338 (35%), Positives = 183/338 (54%), Gaps = 15/338 (4%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+K+ +FD +P RN++ M++G + AR +F +M RNVVSW +I GYT+
Sbjct: 305 IKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQN 364
Query: 62 NRSNGALALF---RRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN-- 116
+ AL+LF +R C P+ T + A D+ H + K GF
Sbjct: 365 GENEEALSLFCLLKRESVC----PTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQ 420
Query: 117 ---AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAV 173
I V N LID Y KCGC+ +F + +ER + VSW ++I GFA +G G EA+
Sbjct: 421 SGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKM-MER-DCVSWNAMIIGFAQNGYGNEAL 478
Query: 174 ENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDM 233
E F M KP+ +T + VL+AC H G VEEG +F M + V P HY C++D+
Sbjct: 479 ELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDL 538
Query: 234 LGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD 293
LGRAG LE+A+ + +P + + V+W +LL AC H N+ +G+ V K+ E+E G
Sbjct: 539 LGRAGFLEEAKSIIEEMPVQ-PDSVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSGP 597
Query: 294 YVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
YVL+ N+ A + ++GDA +R+++ + K PG S +
Sbjct: 598 YVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCSWI 635
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 154/289 (53%), Gaps = 16/289 (5%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+DG +LFD++P+RN+ TWN ++TGL K G L+ A SLF MP R+ +W ++ G+ +
Sbjct: 71 LEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQH 130
Query: 62 NRSNGALALFRRM-----VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN 116
+R AL F M V EYT S ++ + D+ IH K
Sbjct: 131 DRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGL------NDMNRGVQIHSLIAKSPCL 184
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
+ +++ + L+D Y+KCG + A ++F+++ +N+VSW S+I+ + +G EA++ F
Sbjct: 185 S-DVYIGSALVDMYSKCGNVNDAQQVFDEMG--DRNVVSWNSLITCYEQNGPAVEALKVF 241
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
+ M + ++P+ VT SV++AC+ ++ G + ++V+ ++ DI +DM +
Sbjct: 242 QVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAK 301
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
R+++A + +P I NV+ +++ + + + + K+ E
Sbjct: 302 CSRIKEARFIFDSMP--IRNVIAETSMVSGYAMAASTKAARLMFTKMAE 348
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 93/216 (43%), Gaps = 36/216 (16%)
Query: 99 DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI------------ 146
DVR +H K GF+ + + N LID YAKCG + +LF+ +
Sbjct: 38 DVR---CVHASVIKSGFSN-EVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVV 93
Query: 147 -----------------SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
S+ ++ +W S++SGFA H +EA+ F M K N
Sbjct: 94 TGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEY 153
Query: 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
TF S L+ACS + G++ ++ + L D+ L+DM + G + A++V
Sbjct: 154 TFASGLSACSGLNDMNRGVQIH-SLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDE 212
Query: 250 IPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
+ NVV W +L+ +G +V + +LE
Sbjct: 213 MGDR--NVVSWNSLITCYEQNGPAVEALKVFQVMLE 246
>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 900
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/335 (36%), Positives = 187/335 (55%), Gaps = 9/335 (2%)
Query: 1 FLKDGSKLFDELP----ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIID 56
FL +G ++ + L E N+ N +IT K + A +F+E+ + VSW +I
Sbjct: 443 FLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMIL 502
Query: 57 GYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN 116
G T+ S A+ LF RM E +P T++++ PA+ D + IHGY + +
Sbjct: 503 GCTQNGSSEDAVRLFSRM-QLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLD 561
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
++V LID YAKCG + A LF S +++++W ++I G+ HG GK AVE F
Sbjct: 562 Q-DVYVLTALIDMYAKCGRVSIARSLFN--SARDRHVITWNAMIHGYGSHGSGKVAVELF 618
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
E M+ PN TFLSVL+ACSH GLV+EG ++F M E+ + P ++HYG ++D+LGR
Sbjct: 619 EEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGR 678
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
AG+L +A +P E + V+ +LGAC H NVE+ E ++I E+E G +VL
Sbjct: 679 AGKLHEAWSFIQKMPME-PGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVL 737
Query: 297 MYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ NI A + D R+R ++++ K PG S+V
Sbjct: 738 LANIYANASLWKDVARVRTAMEKKGLQKTPGWSIV 772
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 142/289 (49%), Gaps = 11/289 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDG 57
L G + +L R L + T L K AR +F+ MP R+ V+W ++ G
Sbjct: 241 LATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAG 300
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
Y R + A+ + RM + P +T+++V PA + C+ +H + + GF+
Sbjct: 301 YARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDE 360
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
++VS ++D Y KCG + SA K+F+ ++ +N VSW ++I G+A +G EA+ F+
Sbjct: 361 -QVNVSTAILDVYCKCGAVDSARKVFD--GMQDRNSVSWNAMIKGYAENGDATEALALFK 417
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
RM + V+ L+ L+AC G ++EG + + +V + ++ LI M +
Sbjct: 418 RMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLV-RIGLESNVNVMNALITMYCKC 476
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERV-TRKILE 285
R + A +V + + V W ++ C+ +G+ E R+ +R LE
Sbjct: 477 KRTDLAAQVFDELGYKTR--VSWNAMILGCTQNGSSEDAVRLFSRMQLE 523
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 123/246 (50%), Gaps = 11/246 (4%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
K G ++ AR +F+ M RN VSW +I GY + ALALF+RMV E + +++++L
Sbjct: 374 KCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVG-EGVDVTDVSVL 432
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
A A + G + + +H + G + +++V N LI Y KC A ++F+++
Sbjct: 433 AALHACGELGFLDEGRRVHELLVRIGLES-NVNVMNALITMYCKCKRTDLAAQVFDELGY 491
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
K VSW ++I G +G ++AV F RMQ +KP+ T +S++ A + + + L
Sbjct: 492 --KTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALAD---ISDPL 546
Query: 209 --KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
++ + D+ LIDM + GR+ A + + + +V+ W ++
Sbjct: 547 QARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNS--ARDRHVITWNAMIHG 604
Query: 267 CSFHGN 272
HG+
Sbjct: 605 YGSHGS 610
>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 189/330 (57%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L++ LF+++P RN+V+W +++G G+++ AR LF + ++++ WT +I+ Y +
Sbjct: 197 LEEAVNLFEKMPSRNVVSWTTLVSGYAFAGQVDKARLLFHQCTEKDLIMWTAMINAYVQH 256
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL+LFR M EP T++ + G + QLIH + E R +
Sbjct: 257 GCFIEALSLFRDM-QMHQIEPDRFTVVTLLTCCANLGALDQGQLIHQFAEGRNMKLDAV- 314
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LID YAKCG + ++++FE +E ++ +WT+II G A +G A+E FE M++
Sbjct: 315 LGTALIDMYAKCGHVEKSVEVFE--RMEGRDTKAWTAIICGLATNGQAGRALELFEDMER 372
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KP+ VTF+ VL+AC HGGLV+EG K F M E + P ++HY CL+++LGRAG+L+
Sbjct: 373 SEAKPDSVTFIGVLSACCHGGLVDEGRKQFRAMKEVYRIRPRVEHYSCLVNLLGRAGQLD 432
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AEK+ IP + ++ L+ AC GNV+M ER+T++I + +LM N+
Sbjct: 433 EAEKLIKSIPINKDAMPLFGALITACKAQGNVKMSERLTKRIGKQGYQIPDVNLLMSNVY 492
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ D R+R + + K G SL+
Sbjct: 493 ATASRWEDVVRVRSKMAHPSVKKNAGCSLI 522
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 133/290 (45%), Gaps = 42/290 (14%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G LE AR +F+EMP R VV W ++ Y R R+ A+AL M T P +T+L
Sbjct: 95 GRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVALAEEMERGRLT-PDRVTLLTA 153
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A + GD+ + IH Y + G F + V+N L+D Y K GC+ A+ LFE +
Sbjct: 154 LTACSRAGDLSLGRKIHAYMD--GVTGFSLPVANALLDMYVKNGCLEEAVNLFEKMP--S 209
Query: 151 KNLVSWTSIISGFA-------------------------------MHGMGKEAVENFERM 179
+N+VSWT+++SG+A HG EA+ F M
Sbjct: 210 RNVVSWTTLVSGYAFAGQVDKARLLFHQCTEKDLIMWTAMINAYVQHGCFIEALSLFRDM 269
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
Q ++P+R T +++L C++ G +++G + + E + D LIDM + G
Sbjct: 270 QMHQIEPDRFTVVTLLTCCANLGALDQG-QLIHQFAEGRNMKLDAVLGTALIDMYAKCGH 328
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 289
+E++ +V + T W ++ C N + G R +MER
Sbjct: 329 VEKSVEVFERMEGRDTK--AWTAII--CGLATNGQAG-RALELFEDMERS 373
>gi|326507244|dbj|BAJ95699.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 524
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/331 (34%), Positives = 192/331 (58%), Gaps = 10/331 (3%)
Query: 8 LFDELPERN--LVTWNVMITGLVKWGELEYARSLFEEM-----PCRNVVSWTGIIDGYTR 60
LFDE+P++ + +N +IT VK ++ AR LF+EM R++VSW +I G T
Sbjct: 182 LFDEMPQQRKCTIAYNTLITAYVKAKDIFTARHLFDEMQRFKRSRRSMVSWNAMISGCTW 241
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
R + A+ F+ MV P + T+ AV PA + G+ + H Y K+G +
Sbjct: 242 CGRDDMAVRYFQDMVREGKVAPDDGTLAAVLPACGRIGNAGAGRWAHEYACKKGILDISV 301
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
HV+N ++D Y KCG + SA ++FE + +++++VSW ++ISGF+++G G + +E F +M
Sbjct: 302 HVANAVVDMYCKCGVVNSAREVFEGM--QQRSVVSWNTMISGFSLNGQGIKGIELFRQMV 359
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ +PN VTFL VL C+H G V+ G F M E + I+HYGC++D+LGR+G L
Sbjct: 360 RSGGEPNSVTFLGVLGCCAHAGAVDTGQLIFQTMQSEHGIEAGIEHYGCMVDLLGRSGLL 419
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+A + G+ N +W +LL AC H + + E ++++ +E G+Y+L+ N+
Sbjct: 420 EEAHALIQGMRMS-PNSAIWGSLLSACRAHAGLGIAEVALKELISLEPWNSGNYMLLANL 478
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ +A +R+++ + K PG+SL+
Sbjct: 479 YAETQRWDEAGDVRKLMRRMSVQKAPGQSLI 509
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/319 (36%), Positives = 182/319 (57%), Gaps = 8/319 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ +L N ++ K G + A S+F EM +++VSW +I GY++ + N AL LF
Sbjct: 384 QSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVE 443
Query: 74 MVACEY-TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK 132
M +Y ++P+ IT+ + PA + Q IHG+ + GF + HV+N L+D Y K
Sbjct: 444 M---QYNSKPNSITMACILPACASLAALERGQEIHGHILRNGF-SLDRHVANALVDMYLK 499
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
CG + A LF+ I K+LVSWT +I+G+ MHG G EA+ F M+ ++P+ V+F+
Sbjct: 500 CGALGLARLLFDMIP--EKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFI 557
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
S+L ACSH GL++EG FF+ M C + P +HY C++D+L RAG L +A K +P
Sbjct: 558 SILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPI 617
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312
E + +W LL C + +V++ E+V + E+E G YVL+ NI A ++ + ++
Sbjct: 618 E-PDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKK 676
Query: 313 LRRVVDERNALKFPGRSLV 331
LR + R K PG S +
Sbjct: 677 LRERIGRRGLRKNPGCSWI 695
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 162/329 (49%), Gaps = 28/329 (8%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGE------------------LEYARSLFEEM 43
L++G ++FD++ + WN+++ G K G +E AR LF+E+
Sbjct: 152 LREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDEL 211
Query: 44 PCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNC 103
R+V+SW +I GY S L LF +M+ T+++V G +
Sbjct: 212 GDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLG-INTDLATMVSVVAGCSNTGMLLLG 270
Query: 104 QLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 163
+ +HGY K F + ++NCL+D Y+K G + SA+++FE ++ +++VSWTS+I+G+
Sbjct: 271 RALHGYAIKASFGK-ELTLNNCLLDMYSKSGNLNSAIQVFE--TMGERSVVSWTSMIAGY 327
Query: 164 AMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD 223
A G+ +V F M+K + P+ T ++L+AC+ GL+E G K ++E ++ D
Sbjct: 328 AREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENG-KDVHNYIKENKMQSD 386
Query: 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
+ L+DM + G + A V S + ++ ++V W T++G S + +
Sbjct: 387 LFVSNALMDMYAKCGSMGDAHSVFSEM--QVKDIVSWNTMIGGYSKNS---LPNEALNLF 441
Query: 284 LEMERGYGGDYVLMYNILAGVWRYGDAER 312
+EM+ + + M IL ER
Sbjct: 442 VEMQYNSKPNSITMACILPACASLAALER 470
>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/298 (39%), Positives = 175/298 (58%), Gaps = 9/298 (3%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW 95
A LF+EMP RN V+W +I GYT + A+ FR M+A + +PSE T++ V A
Sbjct: 143 ASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLA-DGAQPSERTVVVVLSACS 201
Query: 96 QNGDVRNCQLIHG--YGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 153
G + IH Y + N F V LID YAKCG ++ K+FE+I KN+
Sbjct: 202 HLGAFNQGKWIHEFIYHNRLRLNVF---VGTALIDMYAKCGAVYEVEKVFEEI--REKNV 256
Query: 154 VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDK 213
+W +ISG+AM+G G A++ F RM KP+ VTFL VL AC H GLV EG F
Sbjct: 257 YTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMS 316
Query: 214 MVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
M ++ + P I+HYGC++D+LGRAG LE+A ++ + E + ++WR LL AC HGN
Sbjct: 317 MKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIE-PDPIIWRALLCACRVHGNT 375
Query: 274 EMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
++GE + ++++E+E G +YVL+ NI + R+ + +LR +++ R K PG S +
Sbjct: 376 KLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRKVPGCSSI 433
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 6/173 (3%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
N+ +I K G + +FEE+ +NV +W +I GY + + AL F RM+
Sbjct: 224 NVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRML 283
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQ-LIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
E +P E+T L V A G V + ++ G I C++D + G
Sbjct: 284 M-ENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQP-RIEHYGCMVDLLGRAG 341
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
+ AL+L + +S+E ++ W +++ +HG K +R+ + L+PN
Sbjct: 342 LLEEALELIQSMSIEPDPII-WRALLCACRVHGNTKLGEYIIKRL--IELEPN 391
>gi|224094065|ref|XP_002310070.1| predicted protein [Populus trichocarpa]
gi|222852973|gb|EEE90520.1| predicted protein [Populus trichocarpa]
Length = 438
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/325 (33%), Positives = 192/325 (59%), Gaps = 4/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FD P +NLV+WN M+ G K G L+ AR LF+ MP R+V SW+ +IDGY +
Sbjct: 66 KVFDGTPVKNLVSWNSMVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKSGNYGD 125
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A+A+F +M + +E+T+++V A G + +++H Y GF ++ + L
Sbjct: 126 AMAVFEKMRTSG-PKANEVTMVSVLCACAHLGALDKGRMMHQYLVDNGFE-LNLVLRTSL 183
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YAKCG + A +F +S+ + +++ W ++I G A HG+ KE+++ + MQ +KP
Sbjct: 184 IDMYAKCGAVEEAFAVFRGVSLRKSDVLIWNAMIGGLATHGLVKESLDLYTEMQIAGIKP 243
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +TFL +L+AC+HGGLV++ F+ + + + P +HY C++D++ RAG++ +A +
Sbjct: 244 DEITFLCLLSACAHGGLVKQASYVFEGLGKN-GMTPKTEHYACMVDVMARAGQVAEAYQF 302
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E T ++ LL C HG +++ E + +K++E++ + G YV + N+ A R
Sbjct: 303 LCQMPLEPTASMLG-ALLSGCMNHGKLDLAELIGKKLIELDPEHDGRYVGLSNVYAIGRR 361
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ +A +R ++ R K PG S +
Sbjct: 362 WDEARIMREAMERRGVKKTPGYSFL 386
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 35/200 (17%)
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFA- 164
IHG+ K GF V+N LI Y CG I A K+F+ V KNLVSW S++ G+A
Sbjct: 32 IHGHVIKSGFEIDRF-VANSLIHMYGSCGDIVYARKVFDGTPV--KNLVSWNSMVDGYAK 88
Query: 165 -------------------------MHGMGK-----EAVENFERMQKVVLKPNRVTFLSV 194
+ G K +A+ FE+M+ K N VT +SV
Sbjct: 89 CGYLDLARGLFDLMPERDVRSWSCLIDGYAKSGNYGDAMAVFEKMRTSGPKANEVTMVSV 148
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L AC+H G +++G +V+ L ++ LIDM + G +E+A V G+
Sbjct: 149 LCACAHLGALDKGRMMHQYLVDNGFEL-NLVLRTSLIDMYAKCGAVEEAFAVFRGVSLRK 207
Query: 255 TNVVVWRTLLGACSFHGNVE 274
++V++W ++G + HG V+
Sbjct: 208 SDVLIWNAMIGGLATHGLVK 227
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 190/317 (59%), Gaps = 5/317 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL N +I K GE+E A LFE + ++V+SW +I GY +N AL +F+ M+
Sbjct: 244 NLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEML 303
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF-HIHVSNCLIDTYAKCG 134
T P+++T+L++ PA G + + IH Y +K+ + + LID YAKCG
Sbjct: 304 KLGET-PNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCG 362
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
I +A ++F+ ++ K+L S ++I GFAMHG A + RM+K ++P+ +TF+ +
Sbjct: 363 NIEAANQVFD--TILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGL 420
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L+ACSH GL + G K F M + + P ++HYGC+ID+LGR+G ++AE++ + + E
Sbjct: 421 LSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTME- 479
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLR 314
+ V+W +LL AC H N+E+GE + +K++++E G YVL+ NI A R+ D R+R
Sbjct: 480 PDGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVR 539
Query: 315 RVVDERNALKFPGRSLV 331
+++++ K PG S +
Sbjct: 540 TLLNDKGLKKVPGCSSI 556
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 141/253 (55%), Gaps = 9/253 (3%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
++D K+FD R++V++ MITG G ++ A+ +F+E+P ++VVSW +I GY
Sbjct: 128 IVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAE 187
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+ R AL LF M+ + +P E T+ V +G+V + IH + + GF + ++
Sbjct: 188 IGRYKEALELFNEMMKMD-VKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGS-NL 245
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+ N LID Y+KCG + A LFE ++ K+++SW ++I G+A KEA+ F+ M
Sbjct: 246 KLVNALIDLYSKCGEMERAHGLFE--GLQYKDVISWNTLIGGYAYINHHKEALLVFQEML 303
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEG---LKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
K+ PN VT LS+L AC+H G ++ G + DK ++ ++ + LIDM +
Sbjct: 304 KLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLK--GIITNTSLQTSLIDMYAKC 361
Query: 238 GRLEQAEKVASGI 250
G +E A +V I
Sbjct: 362 GNIEAANQVFDTI 374
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 142/305 (46%), Gaps = 36/305 (11%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
L YA S+F+ + N +SW +I G+ + AL L+ M++ + P+ T +F
Sbjct: 28 LPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLS-PNSYTFPFLFK 86
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS----- 147
+ ++ + + IH K G +HV LI YA+ G + A K+F+ S
Sbjct: 87 SCAKSKAAQEGKQIHAQILKYGLTV-DLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVV 145
Query: 148 ------------------------VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
+ K++VSW ++ISG+A G KEA+E F M K+
Sbjct: 146 SYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMD 205
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
+KP+ T +VL+ C+H G VE G + ++ ++K LID+ + G +E+A
Sbjct: 206 VKPDESTMATVLSTCTHSGNVELGRQIH-SWIDNHGFGSNLKLVNALIDLYSKCGEMERA 264
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
+ G+ + +V+ W TL+G ++ + + V +++L++ G + V M +IL
Sbjct: 265 HGLFEGL--QYKDVISWNTLIGGYAYINHHKEALLVFQEMLKL--GETPNDVTMLSILPA 320
Query: 304 VWRYG 308
G
Sbjct: 321 CAHLG 325
>gi|125539877|gb|EAY86272.1| hypothetical protein OsI_07642 [Oryza sativa Indica Group]
Length = 596
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/317 (35%), Positives = 186/317 (58%), Gaps = 8/317 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D LFD++ R+ V+W MI G + L+ A +F+ MP ++ ++WT +I G+ +
Sbjct: 221 VEDARGLFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQN 280
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR--GFNAFH 119
AL LF RM E P+ +++ A + G V + +HG+ +R G + F+
Sbjct: 281 GEEEIALELFERMTG-EGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFN 339
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+ + N LID Y+KCG + +A+ +F D +ER +++SW S+++GF+ +G GK+++ FERM
Sbjct: 340 VFIHNALIDMYSKCGDMVAAMAVF-DRMLER-DIISWNSMVTGFSHNGQGKQSLAVFERM 397
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
K ++P VTFL+VL ACSH GLV +G + + M ++ V P +HY ID LGR +
Sbjct: 398 LKDEVQPTYVTFLAVLTACSHAGLVSDGRRILESM-QDHGVEPRAEHYAAFIDALGRNHQ 456
Query: 240 LEQAEKVASGIPSEI--TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297
LE+A + G+ S+I W LLGAC HGN+E+ E V + ++E G YV++
Sbjct: 457 LEEASEFIKGLSSKIGLGTTGSWGALLGACHVHGNIEIAEEVAEALFQLEPENSGRYVML 516
Query: 298 YNILAGVWRYGDAERLR 314
NI + ++ DA ++R
Sbjct: 517 SNIYSAAGQWDDARQVR 533
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 111/230 (48%), Gaps = 15/230 (6%)
Query: 9 FDELPERNLVTWNVMITGLVKW-GELEYARSLFEEMP--CRNVVSWTGIIDGYTRMNRSN 65
FD+LP +N ++N ++ L + G L A L + MP RNVVS+ +I R R +
Sbjct: 87 FDDLPHKNAHSYNSLLAALARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRES 146
Query: 66 GALALFRRM-----VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
AL +F ++ + + T+++ A D R+ + +HG G I
Sbjct: 147 EALRVFAQLARDRGLGQQQVAIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVI 206
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
++N ++D Y+K G + A LF+ +++ ++ VSWTS+I+G+ M +AV+ F+ M
Sbjct: 207 -MANAMVDAYSKAGRVEDARGLFDQMTI--RDSVSWTSMIAGYCRASMLDDAVQVFDMMP 263
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCL 230
+ + + ++++ G E L+ F++M E V CL
Sbjct: 264 ----AQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCL 309
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 37/168 (22%)
Query: 121 HVSNCLIDTYAKC-GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
H N L+ A+ G + AL+L + + +N+VS+ ++IS A HG EA+ F ++
Sbjct: 96 HSYNSLLAALARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQL 155
Query: 180 --------QKVVLKPNRVTFLSVLNACS-----------HGGLVEEGLKFFDKMVEECEV 220
Q+V + +R T +S +AC+ HG +V G++ M
Sbjct: 156 ARDRGLGQQQVAI--DRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMAN---- 209
Query: 221 LPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL-GAC 267
++D +AGR+E A + + I + V W +++ G C
Sbjct: 210 --------AMVDAYSKAGRVEDARGLFDQMT--IRDSVSWTSMIAGYC 247
>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/334 (34%), Positives = 188/334 (56%), Gaps = 17/334 (5%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + K+F +P RN++TWN +++G V G +E A+S FEEMP +N+++ T +I G +
Sbjct: 344 VDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQN 403
Query: 62 NRSNGALALFRRM-----VACEYTEPSEITILAVFPAIWQNGDVRNCQLIH-GYGEKRGF 115
+ L LF++M C++ +T +V A+ +NG + QL+H GY
Sbjct: 404 GFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGAL-ENGRQLHAQLVHLGYESS--- 459
Query: 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
+ V N +I YAKCG + +A +F +++ +LVSW S+I+ HG G +A+E
Sbjct: 460 ----LSVGNAMISMYAKCGVVEAAESVF--VTMPSVDLVSWNSMIAALGQHGHGVKAIEL 513
Query: 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
F++M K + P+R+TFL+VL ACSH GLVE+G +F+ M+E + P HY ++D+
Sbjct: 514 FDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFC 573
Query: 236 RAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV 295
RAG A V +PS+ VW LL C HGN+++G ++ ++ G YV
Sbjct: 574 RAGMFSYARIVIDSMPSK-PGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYV 632
Query: 296 LMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
L+ NI A V R+ D ++R+++ ++ K P S
Sbjct: 633 LLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACS 666
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 88/305 (28%), Positives = 137/305 (44%), Gaps = 50/305 (16%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
KLFDE+P+R+ +TW MITG V+ +L AR +FE M +W +I GY
Sbjct: 213 KLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQE 272
Query: 67 ALALFRRM--VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH---IH 121
AL L R+M + ++ +IT + A G + + +H Y K N H +
Sbjct: 273 ALTLCRKMRFLGIQF---DDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLS 329
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VSN LI Y K + A K+F + V +N+++W +I+SG+ G +EA FE M
Sbjct: 330 VSNALITLYCKNNKVDEARKIFYAMPV--RNIITWNAILSGYVNAGRMEEAKSFFEEMP- 386
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKM---------------VEECEVL----- 221
N +T +++ + G +EGLK F +M + C VL
Sbjct: 387 ---VKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALEN 443
Query: 222 -----PDIKHYG---------CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC 267
+ H G +I M + G +E AE V +PS ++V W +++ A
Sbjct: 444 GRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPS--VDLVSWNSMIAAL 501
Query: 268 SFHGN 272
HG+
Sbjct: 502 GQHGH 506
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 137/314 (43%), Gaps = 52/314 (16%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYTRMNRS 64
+LF+E+P + + +IT G LE R +F P R+ V + +I GY
Sbjct: 69 QLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDG 128
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPA-IWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
+ AL LFR M ++ P + T +V A + G+ + C +H K G V
Sbjct: 129 HSALELFRAMRRDDF-RPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVL 187
Query: 124 NCLIDTYAK--------CGCIFSALKLFEDIS--------------VERKNL-------- 153
N L+ Y K C + SA KLF+++ V +L
Sbjct: 188 NALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFE 247
Query: 154 -------VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEE 206
+W ++ISG+ G +EA+ +M+ + ++ + +T+ ++++AC++ G +
Sbjct: 248 AMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQM 307
Query: 207 GLKFFDKMVEECEVLPDIKHYGC------LIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
G + +++ E+ P+ H C LI + + ++++A K+ +P + N++ W
Sbjct: 308 GKQMHAYILKN-ELNPN--HSFCLSVSNALITLYCKNNKVDEARKIFYAMP--VRNIITW 362
Query: 261 RTLLGACSFHGNVE 274
+L G +E
Sbjct: 363 NAILSGYVNAGRME 376
>gi|242061948|ref|XP_002452263.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
gi|241932094|gb|EES05239.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
Length = 603
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/323 (35%), Positives = 188/323 (58%), Gaps = 8/323 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+++ LFD++ R+ VTW MI+G + +L+ A +F+ MP ++ V+WT +I G+ +
Sbjct: 227 VEEARHLFDQISIRDNVTWTSMISGYCQVKKLDEALQVFDMMPDKDRVAWTALISGHEQN 286
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR--GFNAFH 119
+ AL LF RM+A E P+ +++V A + G V + +H +R G + F+
Sbjct: 287 GEEDTALELFERMLA-EGVSPTTFALVSVLGACAKLGLVTRGKELHCSILRRSIGSDPFN 345
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
I + N L+D Y+KCG + +A+ +F + ++ +SW S+++GF+ +G+GK+++ FE M
Sbjct: 346 IFIHNALVDMYSKCGDMTAAMAVFHRMP--ERDFISWNSMVTGFSHNGLGKQSLAIFEEM 403
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
++P VTFL+VL ACSH GLV G + M E+ V P +HY ID LGR +
Sbjct: 404 LVAGVRPTHVTFLAVLTACSHSGLVSNGRLILESM-EDHGVEPRAEHYAAFIDALGRNRQ 462
Query: 240 LEQAEKVASGIPSEITNVVV--WRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297
LE+A + +PS I W LLGAC HGN+E+ E V + ++E G G YV++
Sbjct: 463 LEEAIEFIKDLPSRIGPGTAGSWGALLGACRLHGNIELAEEVAEFLFKLEPGNSGRYVML 522
Query: 298 YNILAGVWRYGDAERLRRVVDER 320
NI A ++ DA R+R ++ E+
Sbjct: 523 SNIYAAAGQWDDARRVRGLMKEK 545
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 129/307 (42%), Gaps = 53/307 (17%)
Query: 9 FDELPERNLVTWNVMITGLVKWGE-LEYARSLFEEMP--CRNVVSWTGIIDGYTRMNRSN 65
FD+LP +N ++N ++ L++ + A LF+ MP RN+VS+ ++ R
Sbjct: 94 FDDLPHKNAHSYNTLLAALLRRPDTFPDALHLFDTMPADARNLVSYNTLMSSLVHHGRQA 153
Query: 66 GALALFRRMVACEYTEP----SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL + R+ + P T+++V A R + +HG G +
Sbjct: 154 EALRVVARLARDRFLGPGLAMDRFTVVSVATACAGIRAARPLREMHGAVVVSGME-LTVI 212
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVE-----------------------------RKN 152
++N +++ Y+K + A LF+ IS+ K+
Sbjct: 213 MANAMVNAYSKAWRVEEARHLFDQISIRDNVTWTSMISGYCQVKKLDEALQVFDMMPDKD 272
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
V+WT++ISG +G A+E FERM + P +SVL AC+ GLV G +
Sbjct: 273 RVAWTALISGHEQNGEEDTALELFERMLAEGVSPTTFALVSVLGACAKLGLVTRGKEL-- 330
Query: 213 KMVEECEVL-------P-DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
C +L P +I + L+DM + G + A V +P + + W +++
Sbjct: 331 ----HCSILRRSIGSDPFNIFIHNALVDMYSKCGDMTAAMAVFHRMPER--DFISWNSMV 384
Query: 265 GACSFHG 271
S +G
Sbjct: 385 TGFSHNG 391
>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Glycine max]
Length = 778
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 180/311 (57%), Gaps = 5/311 (1%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
+ T + E++ AR LF+E + V +W +I GY + + A++LF+ M+ E+T
Sbjct: 344 TALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFT 403
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P+ +TI ++ A Q G + + +H + + +I+VS LID YAKCG I A
Sbjct: 404 -PNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQ-NIYVSTALIDMYAKCGNISEAS 461
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
+LF D++ E KN V+W ++I G+ +HG G EA++ F M + +P+ VTFLSVL ACSH
Sbjct: 462 QLF-DLTSE-KNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSH 519
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
GLV EG + F MV + + P +HY C++D+LGRAG+LE+A + +P E VW
Sbjct: 520 AGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVE-PGPAVW 578
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320
TLLGAC H + + + ++ E++ G G YVL+ NI + + A +R V +R
Sbjct: 579 GTLLGACMIHKDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKR 638
Query: 321 NALKFPGRSLV 331
N K PG +L+
Sbjct: 639 NLSKTPGCTLI 649
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 87/166 (52%), Gaps = 4/166 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ NL + ++ K+ + YAR +F++MP R+ V W +I G R + ++ +F+
Sbjct: 135 DSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKD 194
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
MVA + T+ V PA+ + +V+ I K GF+ F +V LI ++KC
Sbjct: 195 MVA-QGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFH-FDDYVLTGLISVFSKC 252
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+ +A LF I + +LVS+ ++ISGF+ +G + AV+ F +
Sbjct: 253 EDVDTARLLFGMI--RKPDLVSYNALISGFSCNGETECAVKYFREL 296
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 90/195 (46%), Gaps = 7/195 (3%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ +L T + L G +AR+LF +P ++ + +I G++ + +++ +
Sbjct: 37 QHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGFS-FSPDASSISFYTH 95
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
++ P T AI + D +H + GF++ ++ V++ L+D Y K
Sbjct: 96 LLKNTTLSPDNFTYAF---AISASPDDNLGMCLHAHAVVDGFDS-NLFVASALVDLYCKF 151
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
+ A K+F+ + ++ V W ++I+G + ++V+ F+ M ++ + T +
Sbjct: 152 SRVAYARKVFDKM--PDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVAT 209
Query: 194 VLNACSHGGLVEEGL 208
VL A + V+ G+
Sbjct: 210 VLPAVAEMQEVKVGM 224
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 80/196 (40%), Gaps = 37/196 (18%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + S+LFD E+N VTWN MI G +G + GY
Sbjct: 457 ISEASQLFDLTSEKNTVTWNTMIFG---YG-----------------------LHGY--- 487
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNC-QLIHGYGEKRGFNAFHI 120
+ AL LF M+ + +PS +T L+V A G VR ++ H K
Sbjct: 488 --GDEALKLFNEMLHLGF-QPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAE 544
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
H + C++D + G + AL+ + VE V W +++ +H A ER+
Sbjct: 545 HYA-CMVDILGRAGQLEKALEFIRKMPVEPGPAV-WGTLLGACMIHKDTNLARVASERLF 602
Query: 181 KVVLKPNRVTFLSVLN 196
+ L P V + +L+
Sbjct: 603 E--LDPGNVGYYVLLS 616
>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
[Vitis vinifera]
Length = 643
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 190/316 (60%), Gaps = 9/316 (2%)
Query: 21 NVMITGLVKW----GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVA 76
N+++T L+ + E A +F+E+P + VSW +I R+ AL +F M +
Sbjct: 203 NLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCCIHNRRTRDALRMFDIMQS 262
Query: 77 -CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
+ EP ++T L + A G + + +H Y E+ G++ +++ N LI Y++CG
Sbjct: 263 TADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHGYDGA-LNLCNSLITMYSRCGR 321
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ A +F+ ++ +N+VSW+++ISGFAMHG G+EA+E FE+MQ++ + P+ T VL
Sbjct: 322 LEKAYSIFK--RMDERNVVSWSAMISGFAMHGYGREAIEAFEQMQQLGVSPDDQTLTGVL 379
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+ACSH GLV++GL FFD+M + + P+I HYGC++D+LGRAG L+QA ++ + +
Sbjct: 380 SACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLGRAGLLDQAYQLIMSMVIK-P 438
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
+ +WRTLLGAC H + +GERV ++E++ GDYVL+ NI + V + LR+
Sbjct: 439 DSTLWRTLLGACRIHRHATLGERVIGHLIELKAQEAGDYVLLLNIYSSVGNWDKVTDLRK 498
Query: 316 VVDERNALKFPGRSLV 331
+ E+ PG S +
Sbjct: 499 FMKEKGIQTSPGCSTI 514
>gi|50253500|gb|AAT71952.1| At3g21470 [Arabidopsis thaliana]
gi|53850541|gb|AAU95447.1| At3g21470 [Arabidopsis thaliana]
Length = 442
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 125/335 (37%), Positives = 195/335 (58%), Gaps = 16/335 (4%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D K F+++PE+N W++M++G + G++ AR++F + R++V W +I GY +
Sbjct: 112 MEDARKFFEDIPEKNAFVWSLMMSGYFRIGDVHEARAIFYRVFARDLVIWNTLIAGYAQN 171
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG--FNAFH 119
S+ A+ F M Y EP +T+ ++ A Q+G + + +H RG N F
Sbjct: 172 GYSDDAIDAFFNMQGEGY-EPDAVTVSSILSACAQSGRLDVGREVHSLINHRGIELNQF- 229
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
VSN LID YAKCG + +A +FE ISV +++ S+IS A+HG GKEA+E F M
Sbjct: 230 --VSNALIDMYAKCGDLENATSVFESISV--RSVACCNSMISCLAIHGKGKEALEMFSTM 285
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+ + LKP+ +TF++VL AC HGG + EGLK F +M + +V P++KH+GCLI +LGR+G+
Sbjct: 286 ESLDLKPDEITFIAVLTACVHGGFLMEGLKIFSEMKTQ-DVKPNVKHFGCLIHLLGRSGK 344
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY----- 294
L++A ++ + + N V LLGAC H + EM E+V KI+E Y
Sbjct: 345 LKEAYRLVKEMHVK-PNDTVLGALLGACKVHMDTEMAEQVM-KIIETAGSITNSYSENHL 402
Query: 295 VLMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
+ N+ A R+ AE LR +++R K PG S
Sbjct: 403 ASISNLYAHTERWQTAEALRVEMEKRGLEKSPGLS 437
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 128/275 (46%), Gaps = 32/275 (11%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP-CRNVVSWTGIIDGYTRMNRSN 65
K+FDE+PERN+ TWN MI G + G+ A LFEE+ CRN V+W +I GY +
Sbjct: 21 KVFDEMPERNVATWNAMIGGYMSNGDAVLASGLFEEISVCRNTVTWIEMIKGYGKRIEIE 80
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
A LF RM + +L V+ + D R + EK F V +
Sbjct: 81 KARELFERMPFELKNVKAWSVMLGVYVNNRKMEDAR--KFFEDIPEKNAF------VWSL 132
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
++ Y + G + A +F V ++LV W ++I+G+A +G +A++ F MQ +
Sbjct: 133 MMSGYFRIGDVHEARAIF--YRVFARDLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYE 190
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG---------CLIDMLGR 236
P+ VT S+L+AC+ G ++ G EV I H G LIDM +
Sbjct: 191 PDAVTVSSILSACAQSGRLDVGR----------EVHSLINHRGIELNQFVSNALIDMYAK 240
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
G LE A V I + +V +++ + HG
Sbjct: 241 CGDLENATSVFESIS--VRSVACCNSMISCLAIHG 273
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 90/187 (48%), Gaps = 16/187 (8%)
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V + LI Y KCGC+ SA K+F+++ +N+ +W ++I G+ +G +AV ++
Sbjct: 2 VGSSLISMYGKCGCVVSARKVFDEMP--ERNVATWNAMIGGYMSNG---DAVLASGLFEE 56
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ + N VT++ ++ +E+ + F++M E L ++K + ++ + ++E
Sbjct: 57 ISVCRNTVTWIEMIKGYGKRIEIEKARELFERMPFE---LKNVKAWSVMLGVYVNNRKME 113
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A K IP + N VW ++ G+V + ++ + D V+ ++
Sbjct: 114 DARKFFEDIPEK--NAFVWSLMMSGYFRIGDVHEARAIFYRV------FARDLVIWNTLI 165
Query: 302 AGVWRYG 308
AG + G
Sbjct: 166 AGYAQNG 172
>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 748
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 187/330 (56%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + LF ++P +N V+WN MI+G + G+++ A +F+ M +N+VSW +I G+ +
Sbjct: 375 MDEALNLFRQMPIKNSVSWNTMISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQN 434
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
N AL M+ E +P + T A ++ +H Y K G+ +
Sbjct: 435 NLYLDALKSLV-MMGKEGKKPDQSTFACTLSACANLAALQVGNQLHEYILKSGY-MNDLF 492
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LI YAKCG + SA ++F DI E +L+SW S+ISG+A++G +A + FE+M
Sbjct: 493 VGNALIAMYAKCGRVQSAEQVFRDI--ECVDLISWNSLISGYALNGYANKAFKAFEQMSS 550
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ P+ VTF+ +L+ACSH GL +GL F M+E+ + P +HY CL+D+LGR GRLE
Sbjct: 551 ERVVPDEVTFIGMLSACSHAGLANQGLDIFKCMIEDFAIEPLAEHYSCLVDLLGRVGRLE 610
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A G+ + N +W +LLGAC H N+E+G ++ E+E +Y+ + N+
Sbjct: 611 EAFNTVRGMKVK-ANAGLWGSLLGACRVHKNLELGRFAAERLFELEPHNASNYITLSNMH 669
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ + ER+R ++ + A K PG S +
Sbjct: 670 AEAGRWEEVERVRMLMRGKRAGKQPGCSWI 699
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 150/327 (45%), Gaps = 67/327 (20%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV------------- 48
L +LF+++P N V+W M+ GL K+G++ AR LF+ MP +NV
Sbjct: 220 LSSAWQLFEKIPNPNAVSWVTMLCGLAKYGKMAEARELFDRMPSKNVVSWNAMIATYVQD 279
Query: 49 ------------------VSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
VSWT II+GY R+ + + A ++ +M + T + A+
Sbjct: 280 LQVDEAVKLFKKMPHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQT-----AL 334
Query: 91 FPAIWQNGDVRNC----------------QLIHGYGEK----RGFNAFH---IHVS---N 124
+ QNG + +I GY N F I S N
Sbjct: 335 MSGLIQNGRIDEADQMFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMPIKNSVSWN 394
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
+I YA+ G + A ++F+ ++ KN+VSW S+I+GF + + +A+++ M K
Sbjct: 395 TMISGYAQAGQMDRATEIFQ--AMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGK 452
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
KP++ TF L+AC++ ++ G + + +++ + D+ LI M + GR++ AE
Sbjct: 453 KPDQSTFACTLSACANLAALQVGNQLHEYILKSG-YMNDLFVGNALIAMYAKCGRVQSAE 511
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHG 271
+V I E +++ W +L+ + +G
Sbjct: 512 QVFRDI--ECVDLISWNSLISGYALNG 536
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 147/330 (44%), Gaps = 43/330 (13%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D +LFD++ RNLV+WN MI G + +E A LF+ MP R+ SW +I YTR
Sbjct: 64 IRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMPERDNFSWALMITCYTRK 123
Query: 62 NRSNGA------------LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY 109
+ A A + M+A + VF + V ++ GY
Sbjct: 124 GKLEKARELLELVPDKLDTACWNAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGY 183
Query: 110 GEKRGFN-AFHIHVS---------NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 159
+ + A S N ++ Y K G + SA +LFE I N VSW ++
Sbjct: 184 TQNGKMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIP--NPNAVSWVTM 241
Query: 160 ISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECE 219
+ G A +G EA E F+RM N V++ +++ V+E +K F KM +
Sbjct: 242 LCGLAKYGKMAEARELFDRMP----SKNVVSWNAMIATYVQDLQVDEAVKLFKKMPHK-- 295
Query: 220 VLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERV 279
D + +I+ R G+L++A +V + +P + ++ L+ +G ++ +++
Sbjct: 296 ---DSVSWTTIINGYIRVGKLDEARQVYNQMPCK--DITAQTALMSGLIQNGRIDEADQM 350
Query: 280 TRKILEMERGYGGDYVLMYN-ILAGVWRYG 308
+I G V+ +N ++AG R G
Sbjct: 351 FSRI-------GAHDVVCWNSMIAGYSRSG 373
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 135/284 (47%), Gaps = 23/284 (8%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
D K+F+++P ++LV++N M+ G + G++ A FE M RNVVSW ++ GY +
Sbjct: 158 FNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNVVSWNLMVAGYVKS 217
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ A LF ++ P+ ++ + + + + G + + + + ++
Sbjct: 218 GDLSSAWQLFEKI-----PNPNAVSWVTMLCGLAKYGKMAEARELFDRMPSKNVVSW--- 269
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
N +I TY + + A+KLF+ + K+ VSWT+II+G+ G EA + + +M
Sbjct: 270 --NAMIATYVQDLQVDEAVKLFKKMP--HKDSVSWTTIINGYIRVGKLDEARQVYNQMPC 325
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ ++++ G ++E + F ++ D+ + +I R+GR++
Sbjct: 326 KDITAQ----TALMSGLIQNGRIDEADQMFSRIGAH-----DVVCWNSMIAGYSRSGRMD 376
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
+A + +P I N V W T++ + G ++ + + + E
Sbjct: 377 EALNLFRQMP--IKNSVSWNTMISGYAQAGQMDRATEIFQAMRE 418
>gi|413953445|gb|AFW86094.1| hypothetical protein ZEAMMB73_140838 [Zea mays]
Length = 508
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/335 (35%), Positives = 190/335 (56%), Gaps = 7/335 (2%)
Query: 1 FLKDGSKLFDELPERNLVTW----NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIID 56
L + + FDELP N M++ + G + A LF MP R+VVSWT ++
Sbjct: 132 LLAESRRAFDELPAGAGAGAAAARNAMLSAYARGGRVGDAERLFAGMPDRSVVSWTAMVS 191
Query: 57 GYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN 116
GY + R A+ F M P+E+T+ +V PA G + + + Y RG
Sbjct: 192 GYAQNGRHEEAVRTFLDMWDGAGVRPNELTVSSVLPACAALGALALGRKVERYARGRGM- 250
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
+++V+N L++ YAKCG I A K+F + R++L SW S+I FA+HG+ EA+ F
Sbjct: 251 LRNVYVANALVEMYAKCGSIRRAWKVFRGMGT-RRDLCSWNSMIMAFAVHGLWTEALALF 309
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
+++ KP+ +TF+ V+ AC+HGGLV+EG F+ M E + P I+HYGC++D+LGR
Sbjct: 310 HKLRMTGAKPDGITFVGVILACTHGGLVDEGKLLFNSMRGEFGLKPRIEHYGCMVDLLGR 369
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
AG L++A+ + + +P E + V+W LLGACSFHGN E+ E K++ +E + V+
Sbjct: 370 AGLLKEADSLIASMPME-PDAVIWGALLGACSFHGNFELAEIAVEKLMHLEPHNTANLVI 428
Query: 297 MYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ NI A ++ R+ +++ E++ K G S +
Sbjct: 429 LSNIYASCGKWDGVARVWKLLKEKDHKKSAGYSFI 463
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/319 (36%), Positives = 192/319 (60%), Gaps = 9/319 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL N ++ K GELE A LFE + ++V+SW +I GYT MN AL LF+ M+
Sbjct: 300 NLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEML 359
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR---GFNAFHIHVSNCLIDTYAK 132
P+++T+L++ PA G + + IH Y +KR NA + S LID YAK
Sbjct: 360 RSG-ERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTS--LIDMYAK 416
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
CG I +A ++F S+ K+L SW ++I GFAMHG A + F RM+K+ ++P+ +TF+
Sbjct: 417 CGDIEAAHQVFN--SILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFV 474
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
+L+ACS G+++ G F M ++ ++ P ++HYGC+ID+LG +G ++AE++ + +
Sbjct: 475 GLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEM 534
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312
E + V+W +LL AC GNVE+GE + ++++E G YVL+ NI A R+ + +
Sbjct: 535 E-PDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAK 593
Query: 313 LRRVVDERNALKFPGRSLV 331
+R +++++ K PG S +
Sbjct: 594 IRALLNDKGMKKVPGCSSI 612
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 163/310 (52%), Gaps = 13/310 (4%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+D K+FD P R++V++ +I G G +E A+ LF+E+P ++VVSW +I GY
Sbjct: 185 LEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAET 244
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL LF+ M+ P E T++ V A Q+G + + +H + + GF + ++
Sbjct: 245 GNYKEALELFKEMMKTN-IRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGS-NLK 302
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N L+D Y+KCG + +A LFE + K+++SW ++I G+ + KEA+ F+ M +
Sbjct: 303 IVNSLMDLYSKCGELETACGLFEGLLY--KDVISWNTLIGGYTHMNLYKEALLLFQEMLR 360
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEG---LKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
+PN VT LS+L AC+H G ++ G + DK ++ ++ LIDM + G
Sbjct: 361 SGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLR--TSLIDMYAKCG 418
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMY 298
+E A +V + I + ++ W ++ + HG + + ++ ++ G D +
Sbjct: 419 DIEAAHQVFNSILHK--SLSSWNAMIFGFAMHGRADAAFDIFSRMRKI--GIEPDDITFV 474
Query: 299 NILAGVWRYG 308
+L+ R G
Sbjct: 475 GLLSACSRSG 484
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 90/188 (47%), Gaps = 11/188 (5%)
Query: 100 VRNCQLIHGYGEKRGFNAFHIHVSN----CLIDTYAKCGCIFSALKLFEDISVERKNLVS 155
+++ +LIH K G + + +S C+I + G + A+ +FE +++ NL+
Sbjct: 46 LQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFD-GLPY-AISVFE--TIQEPNLLI 101
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215
W ++ G A+ A++ + M + L PN TF +L +C+ +EG + ++
Sbjct: 102 WNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVL 161
Query: 216 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEM 275
+ L D+ + LI + + GRLE A KV P +VV + L+ + G +E
Sbjct: 162 KLGYDL-DLFVHTSLISVYVQNGRLEDARKVFDRSPHR--DVVSYTALIKGYASRGYIES 218
Query: 276 GERVTRKI 283
+++ +I
Sbjct: 219 AQKLFDEI 226
>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/335 (35%), Positives = 190/335 (56%), Gaps = 17/335 (5%)
Query: 9 FDELPERNLVTWNVM--ITGLVKWGE----LEY------ARSLFEEMPCRNVVSWTGIID 56
F + + +LV+WN M +TG ++G+ LE+ A S+F E+ R+VV W II
Sbjct: 271 FGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIIS 330
Query: 57 GYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN 116
+ RS AL L R M E + +T+++ PA + +R + IH + + G +
Sbjct: 331 ACAQSGRSVNALDLLREM-NLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLD 389
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
+ + N LID Y +CG I + ++F+ + +++LVSW +IS + MHG G +AV F
Sbjct: 390 TCNF-ILNSLIDMYGRCGSIQKSRRIFD--LMPQRDLVSWNVMISVYGMHGFGMDAVNLF 446
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
++ + + LKPN +TF ++L+ACSH GL+EEG K+F M E + P ++ Y C++D+L R
Sbjct: 447 QQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSR 506
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
AG+ + + +P E N VW +LLGAC H N ++ E R + E+E G+YVL
Sbjct: 507 AGQFNETLEFIEKMPFE-PNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVL 565
Query: 297 MYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
M NI + R+ DA ++R ++ ER K PG S +
Sbjct: 566 MANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWI 600
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 128/287 (44%), Gaps = 47/287 (16%)
Query: 27 LVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEIT 86
+K G ++ AR FEE+ ++V W ++ GYT AL +FR+MV E +P+ IT
Sbjct: 156 FIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVL-EGVKPNSIT 214
Query: 87 ILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI 146
I + A +R+ + IHGY K + V N L+D YAKC + A + F
Sbjct: 215 IASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFG-- 272
Query: 147 SVERKNLVSWTSI--ISGFAMHGMGKEAVENFERMQKV------VLKPNRVTFLSVLNAC 198
+++ +LVSW ++ ++GF +G GK A+E F+RM + + V + S+++AC
Sbjct: 273 MIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISAC 332
Query: 199 SHGGLVEEGLKFFDKM---------------VEECEVLPDIKH----------------- 226
+ G L +M + C L ++
Sbjct: 333 AQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCN 392
Query: 227 --YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
LIDM GR G ++++ ++ +P ++V W ++ HG
Sbjct: 393 FILNSLIDMYGRCGSIQKSRRIFDLMPQR--DLVSWNVMISVYGMHG 437
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 114/239 (47%), Gaps = 6/239 (2%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G +E AR +F++M RNV SWT I++ Y + + LF MV E P V
Sbjct: 59 GCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVN-EGVRPDHFVFPKV 117
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
F A + + R + ++ Y GF + V ++D + KCG + A + FE+I E
Sbjct: 118 FKACSELKNYRVGKDVYDYMLSIGFEG-NSCVKGSILDMFIKCGRMDIARRFFEEI--EF 174
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
K++ W ++SG+ G K+A+ F +M +KPN +T S ++AC++ L+ G +
Sbjct: 175 KDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREI 234
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
++ E+ D+ L+D + +E A + I T++V W +L F
Sbjct: 235 HGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQ--TDLVSWNAMLAVTGF 291
>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 119/298 (39%), Positives = 174/298 (58%), Gaps = 9/298 (3%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW 95
A LF+EMP RN V+W +I GYT + A+ FR M+A + +PSE T++ V A
Sbjct: 143 ASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLA-DGAQPSERTVVVVLSACS 201
Query: 96 QNGDVRNCQLIHG--YGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNL 153
G + IH Y + N F V LID YAKCG ++ K+FE+I KN+
Sbjct: 202 HLGAFNQGKWIHEFIYHNRLRLNVF---VGTALIDMYAKCGAVYEVEKVFEEI--REKNV 256
Query: 154 VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDK 213
+W +ISG+AM+G G A++ F RM KP+ VTFL VL AC H GLV EG F
Sbjct: 257 YTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMS 316
Query: 214 MVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
M ++ + P I+HYGC++D+LGRAG LE+A ++ + E + ++WR LL AC HGN
Sbjct: 317 MKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIE-PDPIIWRALLCACRVHGNT 375
Query: 274 EMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
++GE + ++++E+E G +YVL+ NI + R+ + +LR ++ R K PG S +
Sbjct: 376 KLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMSLRGIRKVPGCSSI 433
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 6/173 (3%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
N+ +I K G + +FEE+ +NV +W +I GY + + AL F RM+
Sbjct: 224 NVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRML 283
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQ-LIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
E +P E+T L V A G V + ++ G I C++D + G
Sbjct: 284 M-ENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQP-RIEHYGCMVDLLGRAG 341
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
+ AL+L + +S+E ++ W +++ +HG K +R+ + L+PN
Sbjct: 342 LLEEALELIQSMSIEPDPII-WRALLCACRVHGNTKLGEYIIKRL--IELEPN 391
>gi|449527549|ref|XP_004170773.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 487
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 119/326 (36%), Positives = 189/326 (57%), Gaps = 6/326 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
LK LFD+ +++V W VM+ G K G++E AR LF+EMP RNV+SW+ ++ Y+R+
Sbjct: 162 LKVARVLFDKSSGKDVVVWTVMVDGYGKVGDIESARVLFDEMPERNVISWSAMMAAYSRV 221
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ L LFR+M + P++ I++V A G + +H Y ++ G ++ I
Sbjct: 222 SDFREVLCLFRQMQK-KNIVPNDSVIVSVLTACAHLGAITQGLWMHSYAKRYGLDSNPI- 279
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
++ L+D Y+KCG I SAL++FE IS K+ +W ++ISGFAM G +++E F++M
Sbjct: 280 LATALVDMYSKCGYIESALEVFEGIS--NKDAGAWNAMISGFAMTGNVVKSLELFDKMIA 337
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ TF+S+L AC+H +VE GL+FFD+M V P +HY C++D++ RAG +E
Sbjct: 338 SGTQATEATFVSILAACTHAKMVERGLEFFDQMYPVYRVQPQFEHYACVVDLMARAGMVE 397
Query: 242 QAEKVASGIPSEITNVV--VWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
AEK +NV VW +L AC + N+E+G+R+ K+ + GG VL YN
Sbjct: 398 DAEKFVEEKMGGFSNVDANVWGAILSACRQYRNIEIGDRIWTKLSALGLLDGGTQVLSYN 457
Query: 300 ILAGVWRYGDAERLRRVVDERNALKF 325
I + R A+ +R+ E + K+
Sbjct: 458 IFSEAGREMAAKEVRKKFSEARSKKY 483
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 120/271 (44%), Gaps = 35/271 (12%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALF-----RRMVACEYTEPSEITI 87
YA +F+ + RN+ + +I GY A+ + R +A +YT P I
Sbjct: 60 FSYACGIFKNLQQRNIFMYNSMIRGYFLSRFPKQAILCYLDLMDRGFLANKYTFPPLIKA 119
Query: 88 LA-VFPAIWQNGDVRNCQLIHGYGEKRGF---------NAFHIHVSNCL----------- 126
A V+ + + G + + +I E F + F + V+ L
Sbjct: 120 CALVYRELKRIGYLVHAHVIVLGYENDAFVVSALVEFYSLFDLKVARVLFDKSSGKDVVV 179
Query: 127 ----IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
+D Y K G I SA LF+++ +N++SW+++++ ++ +E + F +MQK
Sbjct: 180 WTVMVDGYGKVGDIESARVLFDEMP--ERNVISWSAMMAAYSRVSDFREVLCLFRQMQKK 237
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
+ PN +SVL AC+H G + +GL + + + + L+DM + G +E
Sbjct: 238 NIVPNDSVIVSVLTACAHLGAITQGL-WMHSYAKRYGLDSNPILATALVDMYSKCGYIES 296
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
A +V GI ++ + W ++ + GNV
Sbjct: 297 ALEVFEGISNK--DAGAWNAMISGFAMTGNV 325
>gi|297842491|ref|XP_002889127.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334968|gb|EFH65386.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 466
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 189/309 (61%), Gaps = 9/309 (2%)
Query: 24 ITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPS 83
IT K GELE AR++F+E P R + SW II G R+N A+ +F M + EP
Sbjct: 158 ITLYCKAGELENARNVFDENPERKLGSWNAIIGGLNHAGRANEAVEMFMEMRRSGF-EPD 216
Query: 84 EITILAVFPAIWQNGDVRNC-QLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
+ T+++V A GD+ QL + + + + N LID Y KCG + A+++
Sbjct: 217 DFTMVSVTSACGGLGDLNLAFQLHKCVLQAKTEEKSDVMMMNSLIDMYGKCGRMDFAIQV 276
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202
FE++ ++N+VSW+S+I+G+A +G EA+E F +M++ ++PN++TF+ VL+AC HGG
Sbjct: 277 FEEMP--QRNVVSWSSMITGYAANGNTLEALECFRQMREFGVRPNKITFVGVLSACVHGG 334
Query: 203 LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
LVEEG +F M E + P + HYGC++D+L R G+L++A+KV +P + NV+VW
Sbjct: 335 LVEEGKAYFAMMKSEFNLEPGLSHYGCIVDLLSRDGQLKEAKKVVEEMPMK-PNVMVWGC 393
Query: 263 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI--LAGVWRYGDAERLRRVVDER 320
L+G C G+VEM E V ++E+E G YV++ N+ L G+W+ D ER+R+V+ E+
Sbjct: 394 LMGGCEKFGDVEMAEWVAPYMVELEPWNDGVYVVLANVYALKGMWK--DVERVRKVMKEK 451
Query: 321 NALKFPGRS 329
K P S
Sbjct: 452 KVAKIPAYS 460
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 4/150 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ +++ N +I K G +++A +FEEMP RNVVSW+ +I GY + AL FR+
Sbjct: 251 KSDVMMMNSLIDMYGKCGRMDFAIQVFEEMPQRNVVSWSSMITGYAANGNTLEALECFRQ 310
Query: 74 MVACEY-TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK 132
M E+ P++IT + V A G V + + + C++D ++
Sbjct: 311 MR--EFGVRPNKITFVGVLSACVHGGLVEEGKAYFAMMKSEFNLEPGLSHYGCIVDLLSR 368
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISG 162
G + A K+ E++ + + N++ W ++ G
Sbjct: 369 DGQLKEAKKVVEEMPM-KPNVMVWGCLMGG 397
>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 110/326 (33%), Positives = 192/326 (58%), Gaps = 6/326 (1%)
Query: 7 KLFDELP-ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 65
K D+L ++ N +I+ K ++ A +F + R VSW +I GY + R +
Sbjct: 373 KFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVS 432
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
AL F M + +P T+++V PA+ + R+ + IHG + + +I V+
Sbjct: 433 EALNCFSEMKSLG-MKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDK-NIFVTTA 490
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
L+D Y+KCG I A KLF+ IS +++++W ++I G+ HG+G+ A++ F++M+K ++
Sbjct: 491 LVDMYSKCGAIHMARKLFDMIS--DRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVE 548
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN +T+LSV++ACSH GLV+EGL+ F M ++ + P + HYG ++D+LGRAGR+++A
Sbjct: 549 PNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWD 608
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
+P + V+ +LGAC H N+E+GE+ +K+ E+ GG +VL+ NI A
Sbjct: 609 FIENMPIS-PGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTS 667
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
++ +R+ ++++ K PG S+V
Sbjct: 668 KWSKVAEVRKTMEKKGLKKTPGCSVV 693
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 133/249 (53%), Gaps = 9/249 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDG 57
LK G ++ +L + +TG+V K +++ A +F+ MP R++VSW II G
Sbjct: 163 LKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAG 222
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
+++ + AL L RM E P IT++ V PA G + + IHGY + GF
Sbjct: 223 FSQNGFAKKALELVLRM-QDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAK 281
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
+++S L D Y+KCG + +A +F+ +++K +VSW S++ G+ +G ++A+ FE
Sbjct: 282 L-VNISTALADMYSKCGSVETARLIFD--GMDQKTVVSWNSMMDGYVQNGEPEKAIAVFE 338
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
+M + + P VT + L+AC+ G +E G KF K V++ + DI LI M +
Sbjct: 339 KMLEEGIDPTGVTIMEALHACADLGDLERG-KFVHKFVDQLNLGSDISVMNSLISMYSKC 397
Query: 238 GRLEQAEKV 246
R++ A +
Sbjct: 398 KRVDIASDI 406
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 137/310 (44%), Gaps = 28/310 (9%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
+++ K+G + A +FE + + + ++ GY + + ALA RM + +P
Sbjct: 87 LVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRM-RYDDVKP 145
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
+ N D++ + IHG F A ++ +++ YAKC I A K+
Sbjct: 146 VVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAA-NVFAMTGVVNMYAKCRQIDDAYKM 204
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202
F+ + ++LVSW +II+GF+ +G K+A+E RMQ +P+ +T ++VL A + G
Sbjct: 205 FD--RMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVG 262
Query: 203 LVEEGLKF--------FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L+ G F K+V L DM + G +E A + G+ +
Sbjct: 263 LLMVGKSIHGYAIRAGFAKLVNISTALA---------DMYSKCGSVETARLIFDGMDQK- 312
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER-- 312
VV W +++ +G E V K+L E G V + L GD ER
Sbjct: 313 -TVVSWNSMMDGYVQNGEPEKAIAVFEKML--EEGIDPTGVTIMEALHACADLGDLERGK 369
Query: 313 -LRRVVDERN 321
+ + VD+ N
Sbjct: 370 FVHKFVDQLN 379
>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
Length = 690
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 119/354 (33%), Positives = 190/354 (53%), Gaps = 33/354 (9%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FDE+PE++ V+WN M+ G K GE E A LF+ MP RNVVSW+ ++ Y + A
Sbjct: 292 MFDEMPEKDTVSWNTMLDGYAKAGEAEEAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMA 351
Query: 68 LALFRRMVA------------CE-----------YTEPSE-------ITILAVFPAIWQN 97
+F +M A C +TE E + ++++ A ++
Sbjct: 352 RVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVSILAACAES 411
Query: 98 GDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 157
G + + IH + +R + V N L+D + KCGC+ A +F D + K+ VSW
Sbjct: 412 GCLALGKRIHRHVRQRKLGRSTL-VCNALMDMFCKCGCVNRADYIF-DTEIVEKDSVSWN 469
Query: 158 SIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE 217
II GFAMHG G++A+ F +M++ P+ VT ++VL+AC+H GLVEEG +FF M +
Sbjct: 470 IIIGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETD 529
Query: 218 CEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGE 277
+ P+I+HYGC++D+LGR G +++A + +P E N V+W +LL AC H NVE E
Sbjct: 530 YGIKPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWE-PNEVIWGSLLSACRLHKNVEYAE 588
Query: 278 RVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
++ ++ G+Y ++ NI A ++ D + R + + K G S +
Sbjct: 589 LAANELSNLQPSNAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWI 642
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 149/318 (46%), Gaps = 55/318 (17%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D K+FDE+ R++V+WN + +V+ GE++ ARS+F+EMP ++ VSW ++DGY +
Sbjct: 255 LSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAARSMFDEMPEKDTVSWNTMLDGYAKA 314
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ A LF+RM RN
Sbjct: 315 GEAEEAFELFQRMPG------------------------RNV------------------ 332
Query: 122 VS-NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
VS + ++ Y K G + A +F+ + KNLV+WT ++S A G+ EA F M+
Sbjct: 333 VSWSTVVSAYCKKGDMEMARVIFDKMPA--KNLVTWTIMVSACAQKGLVGEAGRLFTEMK 390
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ ++ + V +S+L AC+ G + G K + V + ++ L+DM + G +
Sbjct: 391 EAAIELDVVAVVSILAACAESGCLALG-KRIHRHVRQRKLGRSTLVCNALMDMFCKCGCV 449
Query: 241 EQAEKVASGIPSEIT--NVVVWRTLLGACSFHGNVEMGERVTRKILEM-ERGYGGDYVLM 297
+A+ + +EI + V W ++G + HG+ GE+ +M ++G+ D V +
Sbjct: 450 NRADYI---FDTEIVEKDSVSWNIIIGGFAMHGH---GEKALNLFTQMKQQGFHPDAVTL 503
Query: 298 YNILAGVWRYGDAERLRR 315
N+L+ G E RR
Sbjct: 504 INVLSACTHMGLVEEGRR 521
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 91/198 (45%), Gaps = 38/198 (19%)
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDIS-----------------------------VERKN 152
V N LID Y+K + A K+F++++ + K+
Sbjct: 241 VGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAARSMFDEMPEKD 300
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
VSW +++ G+A G +EA E F+RM N V++ +V++A G +E FD
Sbjct: 301 TVSWNTMLDGYAKAGEAEEAFELFQRMPGR----NVVSWSTVVSAYCKKGDMEMARVIFD 356
Query: 213 KMVEECEVLPDIKHYGCLID-MLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
KM + V I C ++G AGRL K A+ I ++ VV ++L AC+ G
Sbjct: 357 KMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAA-IELDVVAVV---SILAACAESG 412
Query: 272 NVEMGERVTRKILEMERG 289
+ +G+R+ R + + + G
Sbjct: 413 CLALGKRIHRHVRQRKLG 430
>gi|147825156|emb|CAN75501.1| hypothetical protein VITISV_034156 [Vitis vinifera]
Length = 532
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 114/325 (35%), Positives = 187/325 (57%), Gaps = 4/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FDE+ RN V+WN M+ G K G+L+ A +F MP R+VVSW+ +IDG +
Sbjct: 161 KVFDEMLIRNSVSWNAMLDGYAKCGDLDSAHQVFXSMPDRDVVSWSSMIDGCVKGGEYGV 220
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
ALA+F RM + + +T+++V A G + + +H Y F + + L
Sbjct: 221 ALAIFERMRVVG-PKANXVTMVSVLCACAHLGALEXGRXMHQYMVDNTMR-FTLVLRTSL 278
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+D YAKCG I A+ +F + +++ +++ W +II G A HG+ E++E F+ MQ + + P
Sbjct: 279 MDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVXESLELFKEMQVLGIVP 338
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +T+L + +AC+HGGLV E FF + ++ V P +HY C++D+L RAG+L +A
Sbjct: 339 DEITYLCLFSACAHGGLVHEAWHFFKSLGKQGMV-PKSEHYACMVDVLSRAGQLAEAYDF 397
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ +P E T ++ LL C H ++ ERV RK++E+E + G Y+ + N+ AGV
Sbjct: 398 IAQMPMEPTASML-GALLNGCMNHRRFDLAERVGRKLIELEPDHDGRYIGLSNVYAGVKL 456
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ +A +R ++ R K PG S V
Sbjct: 457 WDNARMMREAMERRGVKKSPGFSFV 481
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 143/282 (50%), Gaps = 40/282 (14%)
Query: 25 TGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV---ACEYTE 81
+ + WG+++++ +F ++P + +W II G+++ N ++++F +M+ C
Sbjct: 47 SAISSWGDIDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVC---- 102
Query: 82 PSEITILAVFPAIWQNGDVR-----NCQ---------------LIHGYGE-------KRG 114
P +T V A+ + ++R +C+ LIH YG ++
Sbjct: 103 PDHLTYPFVAKAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKV 162
Query: 115 FNAFHIHVS---NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKE 171
F+ I S N ++D YAKCG + SA ++F S+ +++VSW+S+I G G
Sbjct: 163 FDEMLIRNSVSWNAMLDGYAKCGDLDSAHQVFX--SMPDRDVVSWSSMIDGCVKGGEYGV 220
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLI 231
A+ FERM+ V K N VT +SVL AC+H G +E G MV+ + L+
Sbjct: 221 ALAIFERMRVVGPKANXVTMVSVLCACAHLGALEXGRXMHQYMVDNTMRFTLVLRTS-LM 279
Query: 232 DMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
DM + G +E+A V G+P + T+V++W T++G + HG V
Sbjct: 280 DMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLV 321
>gi|414587316|tpg|DAA37887.1| TPA: hypothetical protein ZEAMMB73_488455 [Zea mays]
Length = 622
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 125/359 (34%), Positives = 184/359 (51%), Gaps = 35/359 (9%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP------C------------ 45
D LFD +P+RN+V WNVM+ G VK G+LE AR LF+EMP C
Sbjct: 266 DARALFDTMPQRNVVHWNVMVDGYVKCGDLEGARRLFDEMPERTATACTSLIGGYAKAGN 325
Query: 46 -------------RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
R+V SW+ +I GY + AL F + P E+ ++ +
Sbjct: 326 MEAARLLFDKLEDRDVFSWSAMISGYAQNGYPGEALRTFDEFQG-QGIHPDELVVVGLMS 384
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
A Q G++R I Y K + + HV L++ AKCG + A LFE + V ++
Sbjct: 385 ACSQLGNIRLASWIEDYITKYSIDMNNAHVLAGLVNMNAKCGNLERATFLFESMPV--RD 442
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
+ S+ S++ G+ +HG +AV+ F RM L P+ F VL AC H GLVEEG KFFD
Sbjct: 443 VFSYCSLMQGYCLHGSADKAVKLFSRMLLEGLTPDNAVFTIVLTACCHAGLVEEGKKFFD 502
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
M ++P +HY CL+++LGR G LE A + +P + + W LLG C H N
Sbjct: 503 IMKNVYLMVPSGEHYACLVNLLGRCGMLEDAYWLIMSMPGK-PHPGAWGALLGGCKLHCN 561
Query: 273 VEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+E+G+ +K+ E+E G+YV + N+ A + R+GD +R + + K GR+LV
Sbjct: 562 IELGKIAAKKLFEIEPDNAGNYVSLSNMYANIDRWGDVSEVRAEMTGKRITKIAGRTLV 620
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 133/301 (44%), Gaps = 38/301 (12%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
+ G + AR+LF ++ + VSWT II Y +NG + I
Sbjct: 229 RCGVADAARALFYQIDIPSEVSWTAIIVAYV----NNGGI----------------IDAR 268
Query: 89 AVFPAIWQNGDVRNCQLIHGY-------GEKRGFNAFHIHVSNC---LIDTYAKCGCIFS 138
A+F + Q V ++ GY G +R F+ + LI YAK G + +
Sbjct: 269 ALFDTMPQRNVVHWNVMVDGYVKCGDLEGARRLFDEMPERTATACTSLIGGYAKAGNMEA 328
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198
A LF+ + E +++ SW+++ISG+A +G EA+ F+ Q + P+ + + +++AC
Sbjct: 329 ARLLFDKL--EDRDVFSWSAMISGYAQNGYPGEALRTFDEFQGQGIHPDELVVVGLMSAC 386
Query: 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
S G + D + + + + L++M + G LE+A + +P + +V
Sbjct: 387 SQLGNIRLASWIEDYITKYSIDMNNAHVLAGLVNMNAKCGNLERATFLFESMP--VRDVF 444
Query: 259 VWRTLLGACSFHGNVEMGERV-TRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVV 317
+ +L+ HG+ + ++ +R +LE G D + +L G E ++
Sbjct: 445 SYCSLMQGYCLHGSADKAVKLFSRMLLE---GLTPDNAVFTIVLTACCHAGLVEEGKKFF 501
Query: 318 D 318
D
Sbjct: 502 D 502
>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 658
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 111/327 (33%), Positives = 184/327 (56%), Gaps = 6/327 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FDE+PER++++W +I + G +E A LFE +P +++V+WT ++ G+ + +
Sbjct: 206 KVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQE 265
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN-AFHIHVSNC 125
AL F RM E+T+ A Q G + +K G++ + H+ + +
Sbjct: 266 ALEYFDRMEKSG-IRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSA 324
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVL 184
LID Y+KCG + A+ +F +S+ KN+ S++S+I G A HG +EA++ F M + +
Sbjct: 325 LIDMYSKCGNVEEAVNVF--VSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAI 382
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
KPN VTF+ L ACSH GLV++G + F M + V P HY C++D+LGRAGRL++A
Sbjct: 383 KPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEAL 442
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
++ + E + VW LLGAC H N ++ E + E+E G+Y+L+ N+ +
Sbjct: 443 ELIKTMSVE-PHGGVWGALLGACRIHNNPDIAEIAAEHLFELEPDIIGNYILLSNVYSSA 501
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
+G +R+++ E+ K P S V
Sbjct: 502 GDWGGVLSVRKLIKEKGLKKTPAVSWV 528
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 128/275 (46%), Gaps = 44/275 (16%)
Query: 35 YARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAI 94
Y R + E + RN WT +I GYT + + A+A++ M E T P T A+ A
Sbjct: 102 YPRRVIEPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEIT-PVSFTFSALLKAC 160
Query: 95 WQNGDVRNCQLIHGYGEK-RGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI------- 146
GD+ + H + RGF ++V N +ID Y KCG I A K+F+++
Sbjct: 161 GSMGDLNLGRQFHAQTFRLRGF--CFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVIS 218
Query: 147 ----------------------SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
S+ K++V+WT++++GFA + +EA+E F+RM+K +
Sbjct: 219 WTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGI 278
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEV--LPDIKHY---GCLIDMLGRAGR 239
+ + VT ++AC+ G K+ D+ V+ + H LIDM + G
Sbjct: 279 RADEVTVAGYISACAQLG----ASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGN 334
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
+E+A V + ++ NV + +++ + HG +
Sbjct: 335 VEEAVNVFVSMNNK--NVFSYSSMILGLATHGRAQ 367
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 87/200 (43%), Gaps = 10/200 (5%)
Query: 78 EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIF 137
E + E+ + ++ + ++ + IHG+ ++G + ++ LI T K G
Sbjct: 41 EISHQRELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQ-SCYILTKLIRTLTKLGVPM 99
Query: 138 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197
V+ +N WT++I G+ + G EA+ + M+K + P TF ++L A
Sbjct: 100 DPYPRRVIEPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKA 159
Query: 198 CSHGGLVEEGLKFFDKMVEE---CEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
C G + G +F + C V +IDM + G + A KV +P
Sbjct: 160 CGSMGDLNLGRQFHAQTFRLRGFCFVYVG----NTMIDMYVKCGSIVCARKVFDEMPER- 214
Query: 255 TNVVVWRTLLGACSFHGNVE 274
+V+ W L+ A + GN+E
Sbjct: 215 -DVISWTELIAAYARVGNME 233
>gi|357123975|ref|XP_003563682.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Brachypodium distachyon]
Length = 527
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 188/330 (56%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L++ KLF+++P RN+++W ++++G G+L+ AR LF + ++++ WT +I+ +
Sbjct: 197 LEEAVKLFEQMPSRNIISWTILVSGYAFAGQLDKARVLFYQCSEKDLIMWTAMINACVQH 256
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL+LFR M + EP TI+ + G + + IH + R +
Sbjct: 257 GCFEEALSLFREM-QMQRVEPDRFTIVTLLTCCANLGALDQGEWIHQFAVDRKMKVDAV- 314
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LID YAKCG + ++++FE + + ++ +WTSII G A +G A+E FE M++
Sbjct: 315 LGTALIDMYAKCGHVKKSMEVFEQM--QGRDTTAWTSIICGLATNGQAGRALELFEDMER 372
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KP+ +TF+ VL+AC HGGLV+EG K F M + + P I+HY CL+++LGRAG L+
Sbjct: 373 SKVKPDSITFIGVLSACCHGGLVDEGRKQFHAMKDVYRIPPRIEHYSCLVNLLGRAGLLD 432
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AEK+ I + ++ LL AC GNVEM ER+T++I E +LM N+
Sbjct: 433 EAEKLIRDIQINKDAMPLFGALLTACKAQGNVEMSERLTKRIGEQGYQIPDVNLLMSNVY 492
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ DA R+R + K G SL+
Sbjct: 493 ATASRWEDAIRVRSKMAHPTIKKTAGCSLI 522
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 135/289 (46%), Gaps = 42/289 (14%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G + AR LF+EMP R +V W +I Y R R A+AL M T P ++T++
Sbjct: 95 GRADVARKLFDEMPHRALVVWNMMIRCYVRCGRYTAAIALAEEMERSGLT-PDKVTLVTS 153
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
+ GD+ + IH Y + G F + V+N L+D Y K GC+ A+KLFE +
Sbjct: 154 VTVCSRAGDLSLGRRIHAYMD--GVFGFSLPVANALLDMYMKNGCLEEAVKLFEQMP--S 209
Query: 151 KNLVSWTSIISGFAM-------------------------------HGMGKEAVENFERM 179
+N++SWT ++SG+A HG +EA+ F M
Sbjct: 210 RNIISWTILVSGYAFAGQLDKARVLFYQCSEKDLIMWTAMINACVQHGCFEEALSLFREM 269
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
Q ++P+R T +++L C++ G +++G ++ + + ++ D LIDM + G
Sbjct: 270 QMQRVEPDRFTIVTLLTCCANLGALDQG-EWIHQFAVDRKMKVDAVLGTALIDMYAKCGH 328
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
++++ +V + T W +++ C N + G R +MER
Sbjct: 329 VKKSMEVFEQMQGRDTT--AWTSII--CGLATNGQAG-RALELFEDMER 372
>gi|357142551|ref|XP_003572610.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Brachypodium distachyon]
Length = 454
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 120/335 (35%), Positives = 189/335 (56%), Gaps = 11/335 (3%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L ++FD ++ +WN M++G K G+L AR +F MP RN+VSW+ +ID
Sbjct: 126 LLPHARRVFDSGAALDVASWNTMVSGYGKSGDLAAAREVFGRMPGRNLVSWSAMIDALVH 185
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH- 119
AL++F +M+ E +P + ++++ A G V+ + H Y E GF
Sbjct: 186 AEEFGEALSVFDQMMR-EGFKPDVVVLVSMLKACAHLGAVKRGRWAHQYLETEGFAGRQR 244
Query: 120 -IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER 178
+ V L+D Y KCGC+ A +F+ V +++V W S+I G AM+G G A+E F+R
Sbjct: 245 NVMVETALVDMYCKCGCMEEAWCVFD--GVRYRDVVLWNSMIGGLAMNGHGDRALELFQR 302
Query: 179 MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
M + PN+ TF L AC+H G V+EG + F M + P +HYGCL D+LGRAG
Sbjct: 303 MLQEGFVPNQSTFAGALCACTHTGHVDEGREIFKSMWHH-GIEPQREHYGCLADLLGRAG 361
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMY 298
R+ +AE V +P E + W L+ +C H ++ +GERV ++++E+E +GG Y +++
Sbjct: 362 RVGEAEAVLLDMPME-PHASQWGALMLSCQMHNDITVGERVGKRLIELEPHHGGRYAILF 420
Query: 299 NILA--GVWRYGDAERLRRVVDERNALKFPGRSLV 331
N+ A G+W DA +R+++ E+ A K G SLV
Sbjct: 421 NLYAVNGLW--DDARAIRQMMVEKGAKKDAGLSLV 453
>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 113/327 (34%), Positives = 186/327 (56%), Gaps = 6/327 (1%)
Query: 4 DGS-KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
DG+ K+F E+P ++++TWN +++G V G +E A+S F +MP +N+++WT +I G +
Sbjct: 345 DGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNG 404
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV 122
AL LF +M Y EP++ A G + N + +H G ++ + V
Sbjct: 405 FGEQALKLFNQMKLDGY-EPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDS-TLSV 462
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
N +I YA+CG + +A +F +++ + VSW S+I+ HG G +A+E +E+M K
Sbjct: 463 GNAMITMYARCGIVEAARTMF--LTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKE 520
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
+ P+R TFL+VL+ACSH GLVEEG ++F+ M+E + P HY +ID+ RAG+
Sbjct: 521 GILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSD 580
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302
A+ V +P E +W LL C HGN+++G K+ ++ + G YVL+ N+ A
Sbjct: 581 AKNVIDSMPFE-ARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYA 639
Query: 303 GVWRYGDAERLRRVVDERNALKFPGRS 329
+ R+ D R R+++ +R K P S
Sbjct: 640 SLGRWNDVARTRKLMRDRGVKKEPACS 666
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 142/317 (44%), Gaps = 40/317 (12%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ KLFDE+P+RN W +ITG V+ G+L AR + + M + ++W +I GY
Sbjct: 208 MASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHH 267
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA---F 118
AL LFR+M + E T +V A G + +H Y K N F
Sbjct: 268 GLFEDALTLFRKMRLLG-VQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDF 326
Query: 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVE----------------------------- 149
+ V N LI Y K G + A K+F ++ V+
Sbjct: 327 LLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMP 386
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
KNL++WT +ISG A +G G++A++ F +M+ +PN F + ACS G +E G +
Sbjct: 387 EKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQ 446
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
++V + +I M R G +E A + +P + V W +++ A
Sbjct: 447 LHAQIVHLGHD-STLSVGNAMITMYARCGIVEAARTMFLTMP--FVDPVSWNSMIAALGQ 503
Query: 270 HGN----VEMGERVTRK 282
HG+ +E+ E++ ++
Sbjct: 504 HGHGVKAIELYEQMLKE 520
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 148/315 (46%), Gaps = 54/315 (17%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYTRMNRS 64
KLFDE+P+ +++ +IT G L+ AR +F E P R+ V + +I GY+ MN
Sbjct: 69 KLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDG 128
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPA---IWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ A+ LFR M + +P + T +V A I+ D R C +HG K G F
Sbjct: 129 HSAIELFRAMRWANF-QPDDFTFASVLSASTLIFY--DERQCGQMHGTVVKFGIEIFPA- 184
Query: 122 VSNCLIDTYAKCG---------CIFSALKLFE---------------------DISVERK 151
V N L+ Y KC + SA KLF+ D++ R+
Sbjct: 185 VLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGARE 244
Query: 152 NL--------VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGL 203
L ++W ++ISG+ HG+ ++A+ F +M+ + ++ + T+ SV++AC+ GG
Sbjct: 245 ILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGF 304
Query: 204 VEEGLKFFDKMVEECEVLPD----IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVV 259
G K + + E+ PD + LI + + G+++ A K+ +P + +++
Sbjct: 305 FLLG-KQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMP--VKDIIT 361
Query: 260 WRTLLGACSFHGNVE 274
W TLL G +E
Sbjct: 362 WNTLLSGYVNAGRME 376
>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 705
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 179/296 (60%), Gaps = 5/296 (1%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW 95
A+ +F+E P ++ V+W+ +I GY R S A+ LFR M P EIT+++V A
Sbjct: 286 AKKVFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVC-PDEITMVSVLSACA 344
Query: 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 155
G + + + Y E++ + + N LID +AKCG + A+K+F ++ V + +VS
Sbjct: 345 DLGALELGKWLESYIERKNIMR-SVELCNALIDMFAKCGDVDRAVKVFREMKV--RTIVS 401
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215
WTS+I G AMHG G EAV F+ M + + P+ V F+ VL+ACSH GLV++G +F+ M
Sbjct: 402 WTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTME 461
Query: 216 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEM 275
++P I+HYGC++DML RAGR+ +A + +P E N V+WR+++ AC G +++
Sbjct: 462 NMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAMPVE-PNQVIWRSIVTACHARGELKL 520
Query: 276 GERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
GE V ++++ E + +YVL+ NI A + R+ ++R ++D + K PG +++
Sbjct: 521 GESVAKELIRREPSHESNYVLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMI 576
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 4/156 (2%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
R++ N +I K G+++ A +F EM R +VSWT +I G R A+ +F M
Sbjct: 366 RSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEM 425
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
+ + +P ++ + V A +G V E I C++D ++ G
Sbjct: 426 ME-QGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSRAG 484
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK 170
+ AL+ + VE N V W SI++ A H G+
Sbjct: 485 RVNEALEFVRAMPVE-PNQVIWRSIVT--ACHARGE 517
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 118/319 (36%), Positives = 192/319 (60%), Gaps = 9/319 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL N +I K GELE A LF+ + ++V+SW +I GYT MN AL LF+ M+
Sbjct: 269 NLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDML 328
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR---GFNAFHIHVSNCLIDTYAK 132
+P+++T+L++ A G + + IH Y +KR NA + S LID YAK
Sbjct: 329 RSG-EKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTS--LIDMYAK 385
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
CG I +A ++F+ S+ ++L SW ++I GFAMHG A + F RM+K ++P+ +TF+
Sbjct: 386 CGDIEAAQQVFD--SMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFV 443
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
+L+ACSH G+++ G F M + +++P ++HYGC+ID+ G +G ++AEK+ + +
Sbjct: 444 GLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEM 503
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312
E + V+W +LL AC HGNVE+GE + ++++E G YVL+ NI A R+ + +
Sbjct: 504 E-PDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENPGSYVLLSNIYATAERWNEVAK 562
Query: 313 LRRVVDERNALKFPGRSLV 331
R +++++ K PG S +
Sbjct: 563 TRALLNDKGMKKVPGCSSI 581
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 148/273 (54%), Gaps = 11/273 (4%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+D K+ D+ R++V++ +ITG G +E A +F+E+P ++VVSW I GY
Sbjct: 154 LEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAET 213
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL LF++M+ P E T++ V A Q+G + + +H + GF ++
Sbjct: 214 GNYKEALELFKKMMKTN-VRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGF-GXNLK 271
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N LID Y+KCG + +A LF+ +S K+++SW ++I G+ + KEA+ F+ M +
Sbjct: 272 IVNALIDLYSKCGELETACGLFQGLS--NKDVISWNTLIGGYTHMNLYKEALLLFQDMLR 329
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEG---LKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
KPN VT LS+L+AC+H G ++ G + DK ++ ++ LIDM + G
Sbjct: 330 SGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLR--TSLIDMYAKCG 387
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+E A++V + + ++ W ++ + HG
Sbjct: 388 DIEAAQQVFDSMLNR--SLSSWNAMIFGFAMHG 418
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 71/145 (48%), Gaps = 5/145 (3%)
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198
A+ +F+ +++ L+ W ++ G A+ A++ + M + L PN TF +L +C
Sbjct: 56 AISVFD--TIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSC 113
Query: 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
+ +EG + ++++ L D+ + LI M + GRLE A+KV S +VV
Sbjct: 114 AKSXAFKEGQQLHGQVLKFGFDL-DLYIHTSLISMYVQNGRLEDAQKVXD--KSSHRDVV 170
Query: 259 VWRTLLGACSFHGNVEMGERVTRKI 283
+ L+ + G +E ++ +I
Sbjct: 171 SYTALITGYASRGXIESAHKMFDEI 195
>gi|334185512|ref|NP_188784.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274363|sp|Q9LVF9.1|PP245_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g21470
gi|11994382|dbj|BAB02341.1| unnamed protein product [Arabidopsis thaliana]
gi|332642992|gb|AEE76513.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 523
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 125/335 (37%), Positives = 195/335 (58%), Gaps = 16/335 (4%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D K F+++PE+N W++M++G + G++ AR++F + R++V W +I GY +
Sbjct: 193 MEDARKFFEDIPEKNAFVWSLMMSGYFRIGDVHEARAIFYRVFARDLVIWNTLIAGYAQN 252
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG--FNAFH 119
S+ A+ F M Y EP +T+ ++ A Q+G + + +H RG N F
Sbjct: 253 GYSDDAIDAFFNMQGEGY-EPDAVTVSSILSACAQSGRLDVGREVHSLINHRGIELNQF- 310
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
VSN LID YAKCG + +A +FE ISV +++ S+IS A+HG GKEA+E F M
Sbjct: 311 --VSNALIDMYAKCGDLENATSVFESISV--RSVACCNSMISCLAIHGKGKEALEMFSTM 366
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+ + LKP+ +TF++VL AC HGG + EGLK F +M + +V P++KH+GCLI +LGR+G+
Sbjct: 367 ESLDLKPDEITFIAVLTACVHGGFLMEGLKIFSEMKTQ-DVKPNVKHFGCLIHLLGRSGK 425
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY----- 294
L++A ++ + + N V LLGAC H + EM E+V KI+E Y
Sbjct: 426 LKEAYRLVKEMHVK-PNDTVLGALLGACKVHMDTEMAEQVM-KIIETAGSITNSYSENHL 483
Query: 295 VLMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
+ N+ A R+ AE LR +++R K PG S
Sbjct: 484 ASISNLYAHTERWQTAEALRVEMEKRGLEKSPGLS 518
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 128/275 (46%), Gaps = 32/275 (11%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP-CRNVVSWTGIIDGYTRMNRSN 65
K+FDE+PERN+ TWN MI G + G+ A LFEE+ CRN V+W +I GY +
Sbjct: 102 KVFDEMPERNVATWNAMIGGYMSNGDAVLASGLFEEISVCRNTVTWIEMIKGYGKRIEIE 161
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
A LF RM + +L V+ + D R + EK F V +
Sbjct: 162 KARELFERMPFELKNVKAWSVMLGVYVNNRKMEDAR--KFFEDIPEKNAF------VWSL 213
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
++ Y + G + A +F V ++LV W ++I+G+A +G +A++ F MQ +
Sbjct: 214 MMSGYFRIGDVHEARAIF--YRVFARDLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYE 271
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG---------CLIDMLGR 236
P+ VT S+L+AC+ G ++ G EV I H G LIDM +
Sbjct: 272 PDAVTVSSILSACAQSGRLDVGR----------EVHSLINHRGIELNQFVSNALIDMYAK 321
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
G LE A V I + +V +++ + HG
Sbjct: 322 CGDLENATSVFESI--SVRSVACCNSMISCLAIHG 354
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 98/205 (47%), Gaps = 17/205 (8%)
Query: 104 QLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 163
+L+H K G + + V + LI Y KCGC+ SA K+F+++ +N+ +W ++I G+
Sbjct: 66 KLLHSESIKFGVCS-DVMVGSSLISMYGKCGCVVSARKVFDEMP--ERNVATWNAMIGGY 122
Query: 164 AMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD 223
+G +AV +++ + N VT++ ++ +E+ + F++M E L +
Sbjct: 123 MSNG---DAVLASGLFEEISVCRNTVTWIEMIKGYGKRIEIEKARELFERMPFE---LKN 176
Query: 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
+K + ++ + ++E A K IP + N VW ++ G+V + ++
Sbjct: 177 VKAWSVMLGVYVNNRKMEDARKFFEDIPEK--NAFVWSLMMSGYFRIGDVHEARAIFYRV 234
Query: 284 LEMERGYGGDYVLMYNILAGVWRYG 308
+ D V+ ++AG + G
Sbjct: 235 ------FARDLVIWNTLIAGYAQNG 253
>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
Length = 590
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 190/316 (60%), Gaps = 6/316 (1%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E ++ + ++ K ++ AR +F+ +P R+VVS T II GY + AL LFR+
Sbjct: 143 ESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQ 202
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
+ + E + + +T + A+ + + +H ++ F + + N LID Y+KC
Sbjct: 203 LYS-EGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKEL-PFFVALQNSLIDMYSKC 260
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + + ++F+++ +ER ++VSW +++ G+ HG+G E + F+ + K V KP+ VT L+
Sbjct: 261 GKLLYSRRVFDNM-LER-SVVSWNAMLMGYGRHGLGHEVISLFKDLHKEV-KPDSVTLLA 317
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VL+ CSHGGLV+EGL FD +V+E L HYGC+ID+LGR+GRLE+A + +P E
Sbjct: 318 VLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFE 377
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
T +W +LLGAC H NV +GE V +K+LEME G+YV++ NI A + D ++
Sbjct: 378 STP-SIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKV 436
Query: 314 RRVVDERNALKFPGRS 329
R+++ E+ K PG+S
Sbjct: 437 RKLMLEKTVTKEPGQS 452
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 154/310 (49%), Gaps = 14/310 (4%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
++T V+ G L+ AR++ + MP R+VVSWT +I GY++ R AL LF +M+ P
Sbjct: 51 LVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCI-P 109
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
+E T+ V + + + +H K F + H+ V + L+D YAK I A ++
Sbjct: 110 NEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFES-HMFVGSSLLDMYAKSENIQEARRV 168
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202
F+ ++ +++VS T+IISG+A G+ +EA++ F ++ ++ N VTF +++ A S
Sbjct: 169 FD--TLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLA 226
Query: 203 LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
++ G K ++ E+ + LIDM + G+L + +V + +VV W
Sbjct: 227 SLDYG-KQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLER--SVVSWNA 283
Query: 263 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER----LRRVVD 318
+L HG +G V ++ + D V + +L+G G + VV
Sbjct: 284 MLMGYGRHG---LGHEVISLFKDLHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVK 340
Query: 319 ERNALKFPGR 328
E++AL G
Sbjct: 341 EQSALLHTGH 350
>gi|147860852|emb|CAN83162.1| hypothetical protein VITISV_022557 [Vitis vinifera]
Length = 562
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 117/327 (35%), Positives = 189/327 (57%), Gaps = 10/327 (3%)
Query: 7 KLFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
+L DE+P +L+T N++I L+K GE ++A+ +F +M R+VV+W +I G R R
Sbjct: 115 QLLDEMPYWGFDLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERF 174
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
AL FR M+ EP T +V + G + +L+HG ++ I +S+
Sbjct: 175 EEALRFFREMLNSN-VEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLNFI-LSS 232
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LID Y+KCG I +A K+F S++ ++ W S+I+G A+HG+ +A+ F +M+ +
Sbjct: 233 ALIDLYSKCGRINTAKKVFN--SIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESV 290
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
P+ +TF+ +L ACSH GLVE+G ++FD M + P ++HYG ++D+LGRAG +E+A
Sbjct: 291 SPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMVDLLGRAGLVEEAY 350
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+ +P E ++V+WR LL AC N E+GE KI + GDY+L+ N+ +
Sbjct: 351 AMIKAMPME-PDIVIWRALLSACRNFKNPELGEVAIAKISHLN---SGDYILLSNMYCSL 406
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
++ AER+R ++ K GRS V
Sbjct: 407 EKWDSAERVREMMKRDGVRKNRGRSWV 433
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 105/253 (41%), Gaps = 37/253 (14%)
Query: 97 NGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI---------- 146
+ D R H K G+ + +++ L+ TYA C C+ A +L +++
Sbjct: 72 SSDFRTAFQSHAKIIKFGYGTYPSLITS-LVSTYAHCDCLDLAHQLLDEMPYWGFDLITA 130
Query: 147 ---------------------SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
+ R+++V+W S+I G + +EA+ F M ++
Sbjct: 131 NLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVE 190
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
P+ TF SV+N C+ G M+E+ ++ + LID+ + GR+ A+K
Sbjct: 191 PDGFTFASVINGCARLGSSHHAELVHGLMIEK-KIQLNFILSSALIDLYSKCGRINTAKK 249
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
V + I + +V VW +++ + HG + + +EME D + IL
Sbjct: 250 VFNSIQHD--DVSVWNSMINGLAIHG-LALDAIGVFSQMEME-SVSPDSITFIGILTACS 305
Query: 306 RYGDAERLRRVVD 318
G E+ RR D
Sbjct: 306 HCGLVEQGRRYFD 318
>gi|225435933|ref|XP_002267829.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14170-like [Vitis vinifera]
Length = 455
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 192/317 (60%), Gaps = 6/317 (1%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E++L + ++ V +G++ AR LF+EMP R+ V WT ++ GY + AL++FR+
Sbjct: 142 EKSLFVASALVFMYVTFGKVLDARVLFDEMPERDAVLWTAMLAGYAQHEEPMLALSVFRQ 201
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
MV+ + ++++ A Q G +++ + +HG+ +R A +++ N L+ Y KC
Sbjct: 202 MVSAG-VALDGVVMISLLLACGQLGWLKHGKSVHGWITRRCL-ALGLNLGNALVYFYVKC 259
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
+ + LF+ + ++++SW+SII G+ + G A++ F+RM+ +KPN VTFL
Sbjct: 260 AALGYSYNLFDKM--PERDVISWSSIILGYGLSGNVDIALDLFDRMRVAGVKPNDVTFLG 317
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
L+AC+H G+VE +F+ M++E V P++KHY C++D LGRAG LE AE+ +P E
Sbjct: 318 ALSACTHTGMVERAHTYFE-MMKEYGVAPELKHYACMVDCLGRAGMLEDAERFIEEMPVE 376
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
V+ LLG C HGN E+GERV +K++ +E +YV++ NI AG R+ DAE++
Sbjct: 377 ADGAVLG-ALLGGCRVHGNAEVGERVAKKLMGLEPEKASNYVMLANIYAGAGRFEDAEKV 435
Query: 314 RRVVDERNALKFPGRSL 330
R+++ +R K PG S
Sbjct: 436 RQLMKQRKLSKVPGCSF 452
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 123/263 (46%), Gaps = 10/263 (3%)
Query: 16 NLVTWNVMITGLVKWGELE-YARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
N++ + ++ + G+L ++ S+F MP RN+ SW II ++R + + ++ LF +M
Sbjct: 42 NVILSSKLLLMYSQLGKLSPHSLSVFLHMPHRNIYSWNIIIGEFSRSHLPHKSIDLFLQM 101
Query: 75 VACEYTEPSEI-TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
+ +P ++ T+ V A +G V+ +HG + G + V++ L+ Y
Sbjct: 102 R--HFNQPPDVFTLPLVLRACAASGSVKLGVSVHGLCVEMGMEK-SLFVASALVFMYVTF 158
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + A LF+++ ++ V WT++++G+A H A+ F +M + + V +S
Sbjct: 159 GKVLDARVLFDEM--PERDAVLWTAMLAGYAQHEEPMLALSVFRQMVSAGVALDGVVMIS 216
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L AC G ++ G + C L + L+ + L + + +P
Sbjct: 217 LLLACGQLGWLKHGKSVHGWITRRCLAL-GLNLGNALVYFYVKCAALGYSYNLFDKMPER 275
Query: 254 ITNVVVWRTLLGACSFHGNVEMG 276
+V+ W +++ GNV++
Sbjct: 276 --DVISWSSIILGYGLSGNVDIA 296
>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 121/336 (36%), Positives = 186/336 (55%), Gaps = 35/336 (10%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ KLFDE+PER++V+WN M+ G K GE++ A LFE MP RN+VSW+ ++ GY++
Sbjct: 204 LEGACKLFDEMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYSKG 263
Query: 62 NRSNGALALFRRMVAC-------------------EYTE-----------PSEITILAVF 91
+ A LF R A E TE P + ++++
Sbjct: 264 GDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISIL 323
Query: 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151
A ++G + + IH + F V N ID YAKCGC+ +A +F + + +K
Sbjct: 324 AACAESGMLGLGKRIHASMRRWRFRC-GTKVLNAFIDMYAKCGCLDAAFDVFSGM-MAKK 381
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
++VSW S+I GFAMHG G++A+E F RM +P+ TF+ +L AC+H GLV EG K+F
Sbjct: 382 DVVSWNSMIQGFAMHGHGEKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYF 441
Query: 212 DKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
M + ++P ++HYGC++D+LGR G L++A + +P E N ++ TLL AC H
Sbjct: 442 YSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFTLLRSMPME-PNAIILGTLLNACRMHN 500
Query: 272 NVEMGERVTRKILEMERGYGGDYVLMYNIL--AGVW 305
+V+ V ++ ++E G+Y L+ NI AG W
Sbjct: 501 DVDFARAVCEQLFKVEPTDPGNYSLLSNIYAQAGDW 536
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 37/283 (13%)
Query: 16 NLVTWNVMITGLVKWGE--LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
++ N +I + G L+ A SLF M R+VV+W +I G R GA LF
Sbjct: 154 DIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDE 213
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGE----KRGFNAF------HIHVS 123
M + W ++ GY + R F F +I
Sbjct: 214 MPERDMVS-------------WNT-------MLDGYAKAGEMDRAFELFERMPQRNIVSW 253
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
+ ++ Y+K G + A LF+ KN+V WT+II+G+A G +EA E + +M++
Sbjct: 254 STMVCGYSKGGDMDMARVLFDRCPA--KNVVLWTTIIAGYAEKGFVREATELYGKMEEAG 311
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
L+P+ +S+L AC+ G++ G + M K IDM + G L+ A
Sbjct: 312 LRPDDGFLISILAACAESGMLGLGKRIHASM-RRWRFRCGTKVLNAFIDMYAKCGCLDAA 370
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMG-ERVTRKILE 285
V SG+ ++ +VV W +++ + HG+ E E +R + E
Sbjct: 371 FDVFSGMMAK-KDVVSWNSMIQGFAMHGHGEKALELFSRMVPE 412
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 135/302 (44%), Gaps = 28/302 (9%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGAL---AL 70
++L +I L A ++F +P NV + II + N S+ +L A
Sbjct: 50 HQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAH-NTSHPSLPFNAF 108
Query: 71 FRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTY 130
F+ + P T + A + ++IH + EK GF I V N LID+Y
Sbjct: 109 FQMQKNGLF--PDNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGFYG-DIFVPNSLIDSY 165
Query: 131 AKCGC--IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR 188
++CG + A+ LF ++++ +++V+W S+I G G + A + F+ M P R
Sbjct: 166 SRCGSAGLDGAMSLF--LAMKERDVVTWNSMIGGLVRCGELEGACKLFDEM------PER 217
Query: 189 --VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
V++ ++L+ + G ++ + F++M + +I + ++ + G ++ A +
Sbjct: 218 DMVSWNTMLDGYAKAGEMDRAFELFERMPQR-----NIVSWSTMVCGYSKGGDMDMARVL 272
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
P++ NVV+W T++ + G V + K+ E G D + +ILA
Sbjct: 273 FDRCPAK--NVVLWTTIIAGYAEKGFVREATELYGKM--EEAGLRPDDGFLISILAACAE 328
Query: 307 YG 308
G
Sbjct: 329 SG 330
>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 785
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 179/304 (58%), Gaps = 6/304 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL N ++ K G +E A +F ++P +N+VSW +I GY++ + N AL LF M
Sbjct: 394 NLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQ 453
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
+ +P ++T+ V PA + + IHG+ ++G+ + +HV+ L+D Y KCG
Sbjct: 454 --KQLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFS-DLHVACALVDMYVKCGL 510
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ A +LF+ I +K+++ WT +I+G+ MHG GKEA+ FE+M+ ++P +F S+L
Sbjct: 511 LVLAQQLFDMIP--KKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSIL 568
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
AC+H GL++EG K FD M EC + P ++HY C++D+L R+G L +A K +P +
Sbjct: 569 YACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIK-P 627
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
+ +W LL C H +VE+ E+V I E+E YVL+ N+ A ++ + ++++R
Sbjct: 628 DAAIWGALLSGCRIHHDVELAEKVAEHIFELEPENTRYYVLLANVYAEAEKWEEVKKIQR 687
Query: 316 VVDE 319
+ +
Sbjct: 688 RISK 691
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 149/296 (50%), Gaps = 10/296 (3%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I K GE+E AR LF+E+ R+VVSW +I G T S L F +M+
Sbjct: 197 NSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLG-V 255
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+ T++ V A G++ + +H YG K GF+ + +N L+D Y+KCG + A
Sbjct: 256 DVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSG-GVMFNNTLLDMYSKCGNLNGAN 314
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
++F + + +VSWTSII+ G+ EA+ F+ MQ L+P+ SV++AC+
Sbjct: 315 EVF--VKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACAC 372
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
+++G + + +++ + ++ L++M + G +E+A + S +P + N+V W
Sbjct: 373 SNSLDKGREVHNH-IKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLP--VKNIVSW 429
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRV 316
T++G S + + + L+M++ D V M +L E+ R +
Sbjct: 430 NTMIGGYSQN---SLPNEALQLFLDMQKQLKPDDVTMACVLPACAGLAALEKGREI 482
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 125/269 (46%), Gaps = 11/269 (4%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDG 57
L+DG ++ + + V+ LV G+L R +F+ + + W ++
Sbjct: 73 LEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSE 132
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
Y ++ ++ LF +M S T V + VR C+ +HGY K GF +
Sbjct: 133 YAKIGNYRESVGLFEKMQELGIRGDS-YTFTCVLKGFAASAKVRECKRVHGYVLKLGFGS 191
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
++ V N LI Y KCG + SA LF+++S +++VSW S+ISG M+G + +E F
Sbjct: 192 YNA-VVNSLIAAYFKCGEVESARILFDELS--DRDVVSWNSMISGCTMNGFSRNGLEFFI 248
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
+M + + + T ++VL AC++ G + G V + + L+DM +
Sbjct: 249 QMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGV-KAGFSGGVMFNNTLLDMYSKC 307
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGA 266
G L A +V + T +V W +++ A
Sbjct: 308 GNLNGANEVFVKMGE--TTIVSWTSIIAA 334
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 83/195 (42%), Gaps = 29/195 (14%)
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
L+ Y CG + ++F+ I ++ + W ++S +A G +E+V FE+MQ++ ++
Sbjct: 98 LVFMYVNCGDLVKGRRIFDGILNDK--IFLWNLLMSEYAKIGNYRESVGLFEKMQELGIR 155
Query: 186 PNRVTFLSVLNACS-----------HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDML 234
+ TF VL + HG +++ G ++ +V LI
Sbjct: 156 GDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNS------------LIAAY 203
Query: 235 GRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY 294
+ G +E A + + +VV W +++ C+ +G G ++L + G D
Sbjct: 204 FKCGEVESARILFDELSDR--DVVSWNSMISGCTMNGFSRNGLEFFIQMLNL--GVDVDS 259
Query: 295 VLMYNILAGVWRYGD 309
+ N+L G+
Sbjct: 260 ATLVNVLVACANVGN 274
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 117/319 (36%), Positives = 190/319 (59%), Gaps = 9/319 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL N +I K G++E A LFE + C++VVSW +I GYT MN AL LF+ M+
Sbjct: 232 NLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEML 291
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR---GFNAFHIHVSNCLIDTYAK 132
+ P+++TI+++ PA G + + IH Y +K+ NA + S LID YAK
Sbjct: 292 RSGES-PNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTS--LIDMYAK 348
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
CG I +A ++F S+ K+L SW ++I GFAMHG + F RM+K ++P+ +TF+
Sbjct: 349 CGDIEAAHQVFN--SMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFV 406
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
+L+ACSH G ++ G F M ++ ++ P ++HYGC+ID+LG +G ++A+++ +P
Sbjct: 407 GLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPM 466
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312
E + V+W +LL AC HGN+E+ E R ++++E G YVL+ NI A + + +
Sbjct: 467 E-PDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAK 525
Query: 313 LRRVVDERNALKFPGRSLV 331
+R +++ + K PG S +
Sbjct: 526 VRALLNGKGMKKVPGCSSI 544
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 150/278 (53%), Gaps = 11/278 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+D K+FD R++V++ +ITG G + A+ +F+E+P ++VVSW +I GY
Sbjct: 117 LEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAET 176
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL LF+ M+ P E T++ V A Q+ V + +H + + GF + ++
Sbjct: 177 GSYKEALELFKEMMKTN-VRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGS-NLK 234
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N LID Y+KCG + +A LFE +S K++VSW ++I G+ + KEA+ F+ M +
Sbjct: 235 IVNALIDLYSKCGQVETACGLFEGLSC--KDVVSWNTLIGGYTHMNLYKEALLLFQEMLR 292
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEG---LKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
PN VT +S+L AC+H G ++ G + DK +++ P ++ LIDM + G
Sbjct: 293 SGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLR--TSLIDMYAKCG 350
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMG 276
+E A +V + + + ++ W ++ + HG G
Sbjct: 351 DIEAAHQVFNSMLHK--SLSSWNAMIFGFAMHGRANAG 386
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 123/261 (47%), Gaps = 36/261 (13%)
Query: 35 YARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAI 94
YA S+F + N + W ++ GY + AL L+ M++ P+ T + +
Sbjct: 18 YAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLL-PNSYTFPFLLKSC 76
Query: 95 WQNGDVRNCQLIHGYGEKRGFNA-FHIHVS-----------------------------N 124
++ Q IHG+ K G+ ++H S
Sbjct: 77 AKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYT 136
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LI YA G I SA ++F++I V K++VSW ++ISG+A G KEA+E F+ M K +
Sbjct: 137 ALITGYASSGNIRSAQEMFDEIPV--KDVVSWNAMISGYAETGSYKEALELFKEMMKTNV 194
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
+P+ T ++VL+AC+ VE G + +++ ++K LID+ + G++E A
Sbjct: 195 RPDEGTMVTVLSACAQSRSVELGRQVH-SWIDDHGFGSNLKIVNALIDLYSKCGQVETAC 253
Query: 245 KVASGIPSEITNVVVWRTLLG 265
+ G+ + +VV W TL+G
Sbjct: 254 GLFEGLSCK--DVVSWNTLIG 272
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 147 SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEE 206
+++ N + W +++ G+A+ A++ + M + L PN TF +L +C+ EE
Sbjct: 25 TIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKAFEE 84
Query: 207 GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
G + ++ + PD+ + LI M + GRLE A KV S +VV + L+
Sbjct: 85 GQQIHGHVL-KLGYEPDLYVHTSLISMYAQNGRLEDAHKVFD--RSSHRDVVSYTALITG 141
Query: 267 CSFHGNVEMGERVTRKI 283
+ GN+ + + +I
Sbjct: 142 YASSGNIRSAQEMFDEI 158
>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Glycine max]
Length = 661
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 116/301 (38%), Positives = 179/301 (59%), Gaps = 13/301 (4%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G+ E A ++FE M R++V+ +I+G+ R + AL LFR M A E EP T++++
Sbjct: 179 GDTESAHNVFELMRDRDLVAXISVINGFALNGRPSEALTLFREMSA-EGVEPDGFTVVSL 237
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A + G + + +H Y K G + HV+N L+D YAKC I+
Sbjct: 238 LSASAELGALELGRRVHVYLLKVGLRE-NSHVTNSLLDLYAKCDAIWEX----------E 286
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
+N VSWTS+I G A++G G+EA+E F M+ L P+ +TF+ VL ACSH G+++EG +
Sbjct: 287 RNAVSWTSLIVGLAVNGFGEEALELFREMEGQGLVPSEITFVGVLYACSHCGMLDEGFDY 346
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
F +M EE ++P I+HYGC++D+L RAG ++QA + +P + N V WRTLLGAC+ H
Sbjct: 347 FRRMKEEFGIMPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQ-PNAVTWRTLLGACTIH 405
Query: 271 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSL 330
G++ +GE +L++E + GDYVL+ N+ R+ D + +RR + + K G SL
Sbjct: 406 GHLGLGETARSHLLKLEPKHSGDYVLLSNLYTSECRWADVQLIRRSMLKDGVKKTSGYSL 465
Query: 331 V 331
V
Sbjct: 466 V 466
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 122/256 (47%), Gaps = 20/256 (7%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
L YA ++F + NV +W + GY + + AL +R+M+ EP T +
Sbjct: 80 LSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSR-IEPDTHTYPFLLK 138
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
AI ++ +VR + IH + GF + + V N L+ YA CG SA +FE + ++
Sbjct: 139 AISKSLNVREGEAIHSVTIRNGFESL-VFVQNSLLHIYAACGDTESAHNVFE--LMRDRD 195
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
LV+ S+I+GFA++G EA+ F M ++P+ T +S+L+A + G +E G +
Sbjct: 196 LVAXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGRRVHV 255
Query: 213 KMVEECEVLPDIKHY-GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+++ L + H L+D+ + + + E+ N V W +L+ + +G
Sbjct: 256 YLLKVG--LRENSHVTNSLLDLYAKCDAIWEXER----------NAVSWTSLIVGLAVNG 303
Query: 272 NVEMGERVTRKILEME 287
GE EME
Sbjct: 304 ---FGEEALELFREME 316
>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
Length = 920
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 112/316 (35%), Positives = 182/316 (57%), Gaps = 5/316 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
++ WN ++ + G E A SLF E+ ++ ++W G+I G+ + AL +F +M
Sbjct: 481 DISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMS 540
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
+ + T ++ A+ D++ + +HG K G + V+N LI Y KCG
Sbjct: 541 QAG-AKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTS-ETEVANALISLYGKCGS 598
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
I A +F ++S+ +N VSW +II+ + HG G EA++ F++M++ LKPN VTF+ VL
Sbjct: 599 IEDAKMIFSEMSL--RNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVL 656
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
ACSH GLVEEGL +F M + P HY C++D+LGRAG+L++A + +P
Sbjct: 657 AACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPI-TA 715
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
N ++WRTLL AC H N+E+GE + +LE+E YVL+ N A ++ + +++R+
Sbjct: 716 NAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRK 775
Query: 316 VVDERNALKFPGRSLV 331
++ +R K PGRS +
Sbjct: 776 MMKDRGIRKEPGRSWI 791
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 129/258 (50%), Gaps = 7/258 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E ++ V+I K+ L+ AR + E + R+VVSWT +I GY + + ALA F+
Sbjct: 378 ESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKE 437
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M C P I + + A +R IH G+ A I + N L++ YA+C
Sbjct: 438 MQDCG-VWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAA-DISIWNTLVNLYARC 495
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G A LF +I + K+ ++W +ISGF + ++A+ F +M + K N TF+S
Sbjct: 496 GRSEEAFSLFREI--DHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFIS 553
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
++A ++ +++G + + V+ + + LI + G+ G +E A+ + S +
Sbjct: 554 AISALANLADIKQGKQVHGRAVKTGHT-SETEVANALISLYGKCGSIEDAKMIFSEM--S 610
Query: 254 ITNVVVWRTLLGACSFHG 271
+ N V W T++ +CS HG
Sbjct: 611 LRNEVSWNTIITSCSQHG 628
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 9/246 (3%)
Query: 2 LKDGSKLFDELPERNL----VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDG 57
L+ G +L L + + +T ++ VK G++E A +F NVV W ++
Sbjct: 261 LQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVA 320
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
Y +++ + +F +M A P++ T + G + + IH K GF +
Sbjct: 321 YGQISDLAKSFEIFGQMQATG-IHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFES 379
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
++VS LID Y+K C+ A K+ E +E++++VSWTS+I+G+ H +EA+ F+
Sbjct: 380 -DMYVSGVLIDMYSKYRCLDKARKILE--MLEKRDVVSWTSMIAGYVQHDFCEEALATFK 436
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
MQ + P+ + S +AC+ + +GL+ + V DI + L+++ R
Sbjct: 437 EMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHAR-VYVSGYAADISIWNTLVNLYARC 495
Query: 238 GRLEQA 243
GR E+A
Sbjct: 496 GRSEEA 501
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 122/248 (49%), Gaps = 11/248 (4%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N++I K G + AR +F+E+ R+ VSW ++ GY + A L+ +M +T
Sbjct: 82 NLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQM---HWT 138
Query: 81 E--PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFS 138
P+ + +V A + ++IH K+ F + V N LI Y G
Sbjct: 139 AVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCS-ETFVGNALIALYLGFGSFKL 197
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198
A ++F D+ + V++ ++ISG A G G+ A++ F+ MQ L+P+ VT S+L AC
Sbjct: 198 AERVFCDMLFCDR--VTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAAC 255
Query: 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
+ G +++G + +++ I G L+D+ + G +E A + + + TNVV
Sbjct: 256 ASVGDLQKGKQLHSYLLKAGMSFDYITE-GSLLDLYVKCGDIETAHDIFN--LGDRTNVV 312
Query: 259 VWRTLLGA 266
+W +L A
Sbjct: 313 LWNLMLVA 320
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 102/212 (48%), Gaps = 10/212 (4%)
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 165
IH RG A + + N LID YAK G ++ A ++F+++S ++ VSW +++SG+A
Sbjct: 65 IHATSVVRGLGADRL-IGNLLIDLYAKNGLVWQARQVFKELS--SRDHVSWVAMLSGYAQ 121
Query: 166 HGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIK 225
G+GKEA + +M + P SVL+AC+ G L +G + V + +
Sbjct: 122 RGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQG-RMIHAQVYKQAFCSETF 180
Query: 226 HYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
LI + G + AE+V + + V + TL+ S H GE + E
Sbjct: 181 VGNALIALYLGFGSFKLAERVFCDML--FCDRVTFNTLI---SGHAQCGHGECALQIFDE 235
Query: 286 ME-RGYGGDYVLMYNILAGVWRYGDAERLRRV 316
M+ G D V + ++LA GD ++ +++
Sbjct: 236 MQLSGLRPDCVTVASLLAACASVGDLQKGKQL 267
>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 801
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 187/330 (56%), Gaps = 10/330 (3%)
Query: 7 KLFDELPERNLVTWN-VMITGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
KL RN T + V+ T + K G++ ARS+F+ ++++ W+ +I Y +
Sbjct: 348 KLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQN 407
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
N + A +F M C P+E T++++ + G + + IH Y +K+G I
Sbjct: 408 NCIDEAFDIFVHMTGCG-IRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMI- 465
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ +D YA CG I +A +LF + + +++ W ++ISGFAMHG G+ A+E FE M+
Sbjct: 466 LKTSFVDMYANCGDIDTAHRLFAEAT--DRDISMWNAMISGFAMHGHGEAALELFEEMEA 523
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ + PN +TF+ L+ACSH GL++EG + F KMV E P ++HYGC++D+LGRAG L+
Sbjct: 524 LGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLD 583
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++ +P N+ V+ + L AC H N+++GE ++ L +E G VLM NI
Sbjct: 584 EAHELIKSMPMR-PNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIY 642
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+GD +RR + + +K PG S +
Sbjct: 643 ASANRWGDVAYIRRAMKDEGIVKEPGVSSI 672
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 132/267 (49%), Gaps = 10/267 (3%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
+I VK L YAR +F+ + +++SWT +I Y N N + LF +M+ E
Sbjct: 266 TALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLG-EGM 324
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P+EIT+L++ G + +L+H + + GF + ++ ID Y KCG + SA
Sbjct: 325 FPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFT-LSLVLATAFIDMYGKCGDVRSAR 383
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
+F+ S + K+L+ W+++IS +A + EA + F M ++PN T +S+L C+
Sbjct: 384 SVFD--SFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAK 441
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
G +E G K+ +++ + D+ +DM G ++ A ++ + ++ +W
Sbjct: 442 AGSLEMG-KWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDR--DISMW 498
Query: 261 RTLLGACSFHGNVEMGERVTRKILEME 287
++ + HG+ GE EME
Sbjct: 499 NAMISGFAMHGH---GEAALELFEEME 522
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 118/247 (47%), Gaps = 7/247 (2%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I + G L AR LF+++ ++VVSW+ +I Y R + AL L R M
Sbjct: 163 NALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMR-V 221
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG-FNAFHIHVSNCLIDTYAKCGCIFSA 139
+PSEI ++++ + + D++ + +H Y + G + + LID Y KC + A
Sbjct: 222 KPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYA 281
Query: 140 LKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS 199
++F+ +S + +++SWT++I+ + E V F +M + PN +T LS++ C
Sbjct: 282 RRVFDGLS--KASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECG 339
Query: 200 HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVV 259
G +E G K + IDM G+ G + A V S+ ++++
Sbjct: 340 TAGALELG-KLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSK--DLMM 396
Query: 260 WRTLLGA 266
W ++ +
Sbjct: 397 WSAMISS 403
>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Vitis vinifera]
Length = 629
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 119/314 (37%), Positives = 177/314 (56%), Gaps = 9/314 (2%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I K +E A +FE M +++ SW I+ + + +G L L RM+
Sbjct: 276 NSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAG-I 334
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYG-----EKRGFNAFHIHVSNCLIDTYAKCGC 135
+P +T+ V PA + + + IHGY K G + + + N +ID YAKCG
Sbjct: 335 QPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGS 394
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ A +FE +S K++ SW +I G+ MHG G EA+E F RM +V LKP+ VTF+ VL
Sbjct: 395 MRDAHLVFERMS--NKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVL 452
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+ACSH G V +G F +M + +V P I+HY C+IDMLGRAG+L++A ++A +P E
Sbjct: 453 SACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIE-A 511
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
N VVWR LL AC H + + E +++ E+E + G YVLM N+ V RY + +R
Sbjct: 512 NPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRH 571
Query: 316 VVDERNALKFPGRS 329
+ ++N K PG S
Sbjct: 572 TMRQQNVRKTPGCS 585
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 135/263 (51%), Gaps = 11/263 (4%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E ++ + ++ +K+G +E+A+ FEE+P R+VV W +++GY ++ + L FRR
Sbjct: 168 ELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRR 227
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M E PS T+ V GD+ N ++IHG+ K G+++ + VSN LID Y KC
Sbjct: 228 MND-ESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDS-GVAVSNSLIDMYGKC 285
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
CI AL++FE + K++ SW SI+S G + +RM ++P+ VT +
Sbjct: 286 KCIEDALEIFE--MMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTT 343
Query: 194 VLNACSHGGLVEEGLKFFDKMV-----EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
VL ACSH + G + M+ ++ + + D+ +IDM + G + A V
Sbjct: 344 VLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFE 403
Query: 249 GIPSEITNVVVWRTLLGACSFHG 271
+ ++ +V W ++ HG
Sbjct: 404 RMSNK--DVASWNIMIMGYGMHG 424
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 100/214 (46%), Gaps = 25/214 (11%)
Query: 79 YTEPSEITI-LAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIF 137
+ +P +T +A A + ++ + IH Y GF + +++ LI+ Y+KC +
Sbjct: 31 FQQPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITS-LINMYSKCNQMN 89
Query: 138 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197
AL +F D + E N+ ++ +IISGF +G +E E +++M+ + P++ TF + A
Sbjct: 90 FALSIFSDPTHE-INVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKA 148
Query: 198 C--------SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
C HG L + GL+ D+ L++ + G +E A+
Sbjct: 149 CLDVLEIKKIHGLLFKFGLEL------------DVFIGSALVNCYLKFGLMEHAQVAFEE 196
Query: 250 IPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
+P I +VV+W ++ + G EM R++
Sbjct: 197 LP--IRDVVLWNAMVNGYAQIGQFEMVLETFRRM 228
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Query: 3 KDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
KDG + D L + N +I K G + A +FE M ++V SW +I GY
Sbjct: 371 KDGKDIDDVLLK------NAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHG 424
Query: 63 RSNGALALFRRMVACEYT-EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
N AL +F RM CE +P E+T + V A G V + + + A I
Sbjct: 425 YGNEALEMFSRM--CEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIE 482
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 166
C+ID + G + A +L + +E N V W ++++ +H
Sbjct: 483 HYTCVIDMLGRAGQLDEAYELALTMPIE-ANPVVWRALLAACRLH 526
>gi|356532382|ref|XP_003534752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09410-like [Glycine max]
Length = 669
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 119/325 (36%), Positives = 186/325 (57%), Gaps = 7/325 (2%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K FD +P +++ W MIT V G ++ AR LF+++P +NV SW +IDGY R +
Sbjct: 303 KYFDLMPYKDMAAWTAMITACVDEGLMDEARKLFDQIPEKNVGSWNTMIDGYARNSYVGE 362
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL LF M+ + P+E T+ +V + +G V Q H GF + ++N L
Sbjct: 363 ALNLFVLMLRSCF-RPNETTMTSVVTSC--DGMVELMQ-AHAMVIHLGFE-HNTWLTNAL 417
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
I Y+K G + SA +FE + + K++VSWT++I ++ HG G A++ F RM +KP
Sbjct: 418 ITLYSKSGDLCSARLVFEQL--KSKDVVSWTAMIVAYSNHGHGHHALQVFARMLVSGIKP 475
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ VTF+ +L+ACSH GLV +G + FD + + P +HY CL+D+LGRAG +++A V
Sbjct: 476 DEVTFVGLLSACSHVGLVHQGRRLFDSIKGTYNLTPKAEHYSCLVDILGRAGLVDEAMDV 535
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ IP + V LLGAC HG+V + + K+LE+E G YVL+ N A +
Sbjct: 536 VATIPPSARDEAVLVALLGACRLHGDVAIANSIGEKLLELEPSSSGGYVLLANTYAAEGQ 595
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ + ++R+ + ERN + PG S +
Sbjct: 596 WDEFAKVRKRMRERNVKRIPGYSQI 620
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 119/267 (44%), Gaps = 54/267 (20%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + KLFDE+P+R+ V++N MI +K +L A ++F+EMP RNVV+ + +IDGY ++
Sbjct: 81 LDEARKLFDEMPQRDDVSYNSMIAVYLKNKDLLEAETVFKEMPQRNVVAESAMIDGYAKV 140
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R + A +F M NAF
Sbjct: 141 GRLDDARKVFDNMTQ--------------------------------------RNAFSW- 161
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
LI Y CG I AL LF+ + +N+VSWT ++ GFA +G+ A F M
Sbjct: 162 --TSLISGYFSCGKIEEALHLFDQMP--ERNVVSWTMVVLGFARNGLMDHAGRFFYLMP- 216
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ N + + +++ A G E K F +M E +++ + +I RA R++
Sbjct: 217 ---EKNIIAWTAMVKAYLDNGCFSEAYKLFLEMPER-----NVRSWNIMISGCLRANRVD 268
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACS 268
+A + +P N V W ++ +
Sbjct: 269 EAIGLFESMPDR--NHVSWTAMVSGLA 293
>gi|225456505|ref|XP_002280974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50990
[Vitis vinifera]
Length = 523
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 117/327 (35%), Positives = 189/327 (57%), Gaps = 10/327 (3%)
Query: 7 KLFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
+L DE+P +L+T N++I L+K GE ++A+ +F +M R+VV+W +I G R R
Sbjct: 76 QLLDEMPYWGFDLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERF 135
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
AL FR M+ EP T +V + G + +L+HG ++ I +S+
Sbjct: 136 EEALRFFREMLNSN-VEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLNFI-LSS 193
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LID Y+KCG I +A K+F S++ ++ W S+I+G A+HG+ +A+ F +M+ +
Sbjct: 194 ALIDLYSKCGRINTAKKVFN--SIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESV 251
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
P+ +TF+ +L ACSH GLVE+G ++FD M + P ++HYG ++D+LGRAG +E+A
Sbjct: 252 SPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMVDLLGRAGLVEEAY 311
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+ +P E ++V+WR LL AC N E+GE KI + GDY+L+ N+ +
Sbjct: 312 AMIKAMPME-PDIVIWRALLSACRNFKNPELGEVAIAKISHLN---SGDYILLSNMYCSL 367
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
++ AER+R ++ K GRS V
Sbjct: 368 EKWDSAERVREMMKRDGVRKNRGRSWV 394
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 105/253 (41%), Gaps = 37/253 (14%)
Query: 97 NGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI---------- 146
+ D R H K G+ + +++ L+ TYA C C+ A +L +++
Sbjct: 33 SSDFRTAFQSHAKIIKFGYGTYPSLITS-LVSTYAHCDCLDLAHQLLDEMPYWGFDLITA 91
Query: 147 ---------------------SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
+ R+++V+W S+I G + +EA+ F M ++
Sbjct: 92 NLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVE 151
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
P+ TF SV+N C+ G M+E+ ++ + LID+ + GR+ A+K
Sbjct: 152 PDGFTFASVINGCARLGSSHHAELVHGLMIEK-KIQLNFILSSALIDLYSKCGRINTAKK 210
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
V + I + +V VW +++ + HG + + +EME D + IL
Sbjct: 211 VFNSIQHD--DVSVWNSMINGLAIHG-LALDAIGVFSQMEME-SVSPDSITFIGILTACS 266
Query: 306 RYGDAERLRRVVD 318
G E+ RR D
Sbjct: 267 HCGLVEQGRRYFD 279
>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 573
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 110/295 (37%), Positives = 178/295 (60%), Gaps = 6/295 (2%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
+E A+ LFE M +++V+WT +I Y N + +L LF RM E P ++ ++ V
Sbjct: 152 VEDAQRLFERMLSKDLVTWTVMIGAYADCN-AYESLVLFDRMRE-EGVVPDKVAMVTVVN 209
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
A + G + + + Y + GF + + + +ID YAKCG + SA ++F+ ++ KN
Sbjct: 210 ACAKLGAMHRARFANDYIVRNGF-SLDVILGTAMIDMYAKCGSVESAREVFD--RMKEKN 266
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
++SW+++I+ + HG GK+A++ F M + PNRVTF+S+L ACSH GL+EEGL+FF+
Sbjct: 267 VISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFN 326
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
M EE V PD+KHY C++D+LGRAGRL++A ++ + E + +W LLGAC H
Sbjct: 327 SMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVE-KDERLWSALLGACRIHSK 385
Query: 273 VEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPG 327
+E+ E+ +LE++ G YVL+ NI A ++ + R ++ +R K PG
Sbjct: 386 MELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKIPG 440
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 128/257 (49%), Gaps = 8/257 (3%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
++LV N ++ + ++ A SLF+ + R+ +W+ ++ G+ + G A FR +
Sbjct: 33 QDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKAGDHAGCYATFREL 92
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
+ C T P T+ V D++ ++IH K G + H V L+D YAKC
Sbjct: 93 LRCGVT-PDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHF-VCASLVDMYAKCI 150
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
+ A +LFE + K+LV+WT +I +A E++ F+RM++ + P++V ++V
Sbjct: 151 VVEDAQRLFE--RMLSKDLVTWTVMIGAYA-DCNAYESLVLFDRMREEGVVPDKVAMVTV 207
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
+NAC+ G + +F + + D+ +IDM + G +E A +V + +
Sbjct: 208 VNACAKLGAMHRA-RFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEK- 265
Query: 255 TNVVVWRTLLGACSFHG 271
NV+ W ++ A +HG
Sbjct: 266 -NVISWSAMIAAYGYHG 281
>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Glycine max]
Length = 566
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 124/359 (34%), Positives = 185/359 (51%), Gaps = 35/359 (9%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ KLFDE+P RN+ +WN M+ G VK G+L AR +F+ MP +NVVS+T +IDGY +
Sbjct: 212 EARKLFDEMPHRNVASWNSMLQGFVKMGDLSGARGVFDAMPEKNVVSFTTMIDGYAKAGD 271
Query: 64 -------------------------------SNGALALFRRMVACEYTEPSEITILAVFP 92
N AL +F M +P E ++++
Sbjct: 272 MAAARFLFDCSLEKDVVAWSALISGYVQNGLPNQALRVFLEMELMN-VKPDEFILVSLMS 330
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
A Q G + Q + Y K + HV L+D AKCG + ALKLF++ R++
Sbjct: 331 ASAQLGHLELAQWVDSYVSKICIDLQQDHVIAALLDMNAKCGNMERALKLFDE--KPRRD 388
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
+V + S+I G ++HG G+EAV F RM L P+ V F +L ACS GLV+EG +F
Sbjct: 389 VVLYCSMIQGLSIHGRGEEAVNLFNRMLMEGLTPDEVAFTVILTACSRAGLVDEGRNYFQ 448
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
M ++ + P HY C++D+L R+G + A ++ IP E + W LLGAC +G+
Sbjct: 449 SMKQKYCISPLPDHYACMVDLLSRSGHIRDAYELIKLIPWE-PHAGAWGALLGACKLYGD 507
Query: 273 VEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
E+GE V ++ E+E +YVL+ +I A R+ D +R + ER K PG S +
Sbjct: 508 SELGEIVANRLFELEPLNAANYVLLSDIYAAAERWIDVSLVRSKMRERRVRKIPGSSKI 566
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 148/308 (48%), Gaps = 49/308 (15%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ D K+FD + +RN+V+W M+ G V G++ AR LF+EMP RNV SW ++ G+ +M
Sbjct: 179 IADARKVFDGMSDRNVVSWTAMLVGYVAVGDVVEARKLFDEMPHRNVASWNSMLQGFVKM 238
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+GA +F M ++ +F
Sbjct: 239 GDLSGARGVFDAM------------------------------------PEKNVVSF--- 259
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ID YAK G + +A LF D S+E K++V+W+++ISG+ +G+ +A+ F M+
Sbjct: 260 --TTMIDGYAKAGDMAAARFLF-DCSLE-KDVVAWSALISGYVQNGLPNQALRVFLEMEL 315
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE-CEVLPDIKHYGCLIDMLGRAGRL 240
+ +KP+ +S+++A + G +E ++ D V + C L L+DM + G +
Sbjct: 316 MNVKPDEFILVSLMSASAQLGHLELA-QWVDSYVSKICIDLQQDHVIAALLDMNAKCGNM 374
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+A K+ P +VV++ +++ S HG E + ++L ME G D V I
Sbjct: 375 ERALKLFDEKPRR--DVVLYCSMIQGLSIHGRGEEAVNLFNRML-ME-GLTPDEVAFTVI 430
Query: 301 LAGVWRYG 308
L R G
Sbjct: 431 LTACSRAG 438
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 115/257 (44%), Gaps = 22/257 (8%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
L YA S+F + + V W +I + + N + L+ F RM A P T +V
Sbjct: 78 LSYASSVFHRVLAPSTVLWNTLIKSHCQKNLFSHTLSAFARMKA-HGALPDSFTYPSVIK 136
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
A R + +HG + G + ++V LID Y KCG I A K+F+ +S +N
Sbjct: 137 ACSGTCKAREGKSLHGSAFRCGVDQ-DLYVGTSLIDMYGKCGEIADARKVFDGMS--DRN 193
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR--VTFLSVLNACSHGGLVEEGLKF 210
+VSWT+++ G+ G EA + F+ M P+R ++ S+L G +
Sbjct: 194 VVSWTAMLVGYVAVGDVVEARKLFDEM------PHRNVASWNSMLQGFVKMGDLSGARGV 247
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
FD M E+ ++ + +ID +AG + A + S +VV W L+ +
Sbjct: 248 FDAMPEK-----NVVSFTTMIDGYAKAGDMAAARFLFDC--SLEKDVVAWSALISGYVQN 300
Query: 271 GNVEMGERVTRKILEME 287
G + + R LEME
Sbjct: 301 G---LPNQALRVFLEME 314
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 92/226 (40%), Gaps = 23/226 (10%)
Query: 105 LIHGYGEKRGFNAF-HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 163
+IH E+ F F I ++ L+ T + +F V + V W ++I
Sbjct: 52 IIHRGLEQDHFLVFLFISRAHTLLSTLSYASSVFH--------RVLAPSTVLWNTLIKSH 103
Query: 164 AMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD 223
+ + F RM+ P+ T+ SV+ ACS EG K C V D
Sbjct: 104 CQKNLFSHTLSAFARMKAHGALPDSFTYPSVIKACSGTCKAREG-KSLHGSAFRCGVDQD 162
Query: 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
+ LIDM G+ G + A KV G+ NVV W +L G V +G+ V +
Sbjct: 163 LYVGTSLIDMYGKCGEIADARKVFDGMSDR--NVVSWTAMLV-----GYVAVGDVVEARK 215
Query: 284 LEMERGYGGDYVLMYN-ILAGVWRYGDAERLRRVVD---ERNALKF 325
L E + V +N +L G + GD R V D E+N + F
Sbjct: 216 LFDEMPHRN--VASWNSMLQGFVKMGDLSGARGVFDAMPEKNVVSF 259
>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 525
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 115/328 (35%), Positives = 184/328 (56%), Gaps = 7/328 (2%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FDE+P N+V+W+VMI+G K G+++ AR F+E P ++ W +I GY + + +
Sbjct: 164 VFDEIPSLNVVSWSVMISGYAKVGDVDSARLFFDEAPEKDKGIWGAMISGYVQNSCFKES 223
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LFR M + P E +++ A G + IH + + + +S L+
Sbjct: 224 LYLFRLMQLTDIV-PDESIFVSILSACAHLGALEIGVWIHQHLNQLKLVPLSVRLSTSLL 282
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D YAKCG + A +LF+ S+ +++V W ++ISG AMHG GK A++ F M+KV +KP+
Sbjct: 283 DMYAKCGNLELAKRLFD--SMNMRDVVCWNAMISGMAMHGDGKGALKLFYDMEKVGVKPD 340
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TF++V ACS+ G+ EGL DKM ++P +HYGCL+D+L RAG E+A +
Sbjct: 341 DITFIAVFTACSYSGMAYEGLMLLDKMCSVYNIVPKSEHYGCLVDLLSRAGLFEEAMVMI 400
Query: 248 SGIPSE---ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERG-YGGDYVLMYNILAG 303
I + + WR L AC HG ++ E K+L+++ + G YVL+ N+ A
Sbjct: 401 RKITNSWNGSEETLAWRAFLSACCNHGETQLAELAAEKVLQLDNHIHSGVYVLLSNLYAA 460
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
++ DA R+R ++ + K PG S V
Sbjct: 461 SGKHSDARRVRDMMKIKGTNKAPGCSSV 488
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 134/289 (46%), Gaps = 42/289 (14%)
Query: 32 ELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVF 91
L YA +FE++ V + +I + N+ AL +F +M+ E +P TI V
Sbjct: 56 SLTYACRVFEQIQNPTVCIYNTLIKAFLVNNKFKSALQVFVKMLQSE-LKPDNYTIPYVL 114
Query: 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151
A D ++IHGY K G F I+V N L+ Y G + +A +F++I
Sbjct: 115 KACGTFHDCSFGKMIHGYSSKLGL-VFDIYVGNSLMAMYCVFGDVVAARYVFDEI--PSL 171
Query: 152 NLVSWTSIISGFAMHG-------------------------------MGKEAVENFERMQ 180
N+VSW+ +ISG+A G KE++ F MQ
Sbjct: 172 NVVSWSVMISGYAKVGDVDSARLFFDEAPEKDKGIWGAMISGYVQNSCFKESLYLFRLMQ 231
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP-DIKHYGCLIDMLGRAGR 239
+ P+ F+S+L+AC+H G +E G+ + + + + +++P ++ L+DM + G
Sbjct: 232 LTDIVPDESIFVSILSACAHLGALEIGV-WIHQHLNQLKLVPLSVRLSTSLLDMYAKCGN 290
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
LE A+++ + + +VV W ++ + HG+ G+ + +ME+
Sbjct: 291 LELAKRLFDSM--NMRDVVCWNAMISGMAMHGD---GKGALKLFYDMEK 334
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 27/171 (15%)
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198
A ++FE I + + + ++I F ++ K A++ F +M + LKP+ T VL AC
Sbjct: 60 ACRVFEQI--QNPTVCIYNTLIKAFLVNNKFKSALQVFVKMLQSELKPDNYTIPYVLKAC 117
Query: 199 S-----------HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
HG + GL F DI L+ M G + A V
Sbjct: 118 GTFHDCSFGKMIHGYSSKLGLVF------------DIYVGNSLMAMYCVFGDVVAARYVF 165
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMY 298
IPS NVV W ++ + G+V+ + E ++G G + Y
Sbjct: 166 DEIPS--LNVVSWSVMISGYAKVGDVDSARLFFDEAPEKDKGIWGAMISGY 214
>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
Length = 601
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 118/325 (36%), Positives = 188/325 (57%), Gaps = 14/325 (4%)
Query: 14 ERNLVTWNVMI-TGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGAL 68
E V W+V + + LV K G + A +F EMP RN+VSW +I GY + NR AL
Sbjct: 232 ESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEAL 291
Query: 69 ALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGE--KRGFNAFHIHVSNCL 126
+F+ M+ E EP++ T+ + A Q G + + +H Y + K G N+ + L
Sbjct: 292 KVFQEMII-EGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNS---KLGTAL 347
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+D Y+KCGC+ AL +FE + K++ WT++I+G AM G ++ F +M + ++P
Sbjct: 348 VDMYSKCGCVDEALLVFEKLPA--KDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQP 405
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N VTFL VL+AC+HGGLV+EGL+ F M+ + + P++ HYGC++D+LGRAGRLE+A K
Sbjct: 406 NGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKF 465
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E T VW L C H E+GE + +++++ + G Y+L+ N+ + +
Sbjct: 466 IESMPMEPTP-GVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQK 524
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ A +RR++ + K PG S +
Sbjct: 525 WEAAANVRRLMKGKGVDKSPGCSWI 549
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 137/252 (54%), Gaps = 6/252 (2%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +++ G ++ +R LF E ++VVSWT +I+G R R+ AL F M +
Sbjct: 142 NSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRS-SGV 200
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
E E+TI++V A DV + +HG+ + G + ++V + L+D Y+KCG A+
Sbjct: 201 EVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAV 260
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
K+F ++ +NLVSW ++I+G+ KEA++ F+ M ++PN+ T S L AC+
Sbjct: 261 KVFNEMPT--RNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQ 318
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
G +++G ++ + V+ ++ + K L+DM + G +++A V +P++ +V W
Sbjct: 319 LGSLDQG-RWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAK--DVYPW 375
Query: 261 RTLLGACSFHGN 272
++ + G+
Sbjct: 376 TAMINGLAMRGD 387
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 111/239 (46%), Gaps = 17/239 (7%)
Query: 32 ELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM-----VACEYTEPSEIT 86
+L Y LF+ + + W II G++ ++ L + R+ + +T P
Sbjct: 53 DLGYTLLLFDRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFP---L 109
Query: 87 ILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI 146
+L F + + I +G F+AF V N L+ +A CG + + +LF I
Sbjct: 110 LLKAFSKLRNENPFQFYAHIVKFGLD--FDAF---VQNSLVSAFAHCGYVDCSRRLF--I 162
Query: 147 SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEE 206
+K++VSWT++I+G +G EA+E F M+ ++ + VT +SVL A + V
Sbjct: 163 ETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWF 222
Query: 207 GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
G VE V+ D+ L+DM + G + A KV + +P+ N+V W L+
Sbjct: 223 GRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTR--NLVSWGALIA 279
>gi|356567066|ref|XP_003551744.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 488
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 125/318 (39%), Positives = 194/318 (61%), Gaps = 5/318 (1%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E ++V+W+ ++ VK GELE AR +F+EMP R+VVSWT ++ GY++ R AL LF
Sbjct: 174 EVDVVSWSGLLVAHVKAGELEVARRVFDEMPQRDVVSWTAMLTGYSQAKRPREALELFGE 233
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M P E+T++++ A GD+ ++H + E+ GF + + + N LID Y KC
Sbjct: 234 MRRSG-VWPDEVTMVSLVSACASLGDMETGMMVHRFVEENGF-GWMVALCNALIDMYGKC 291
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
GC+ A ++F ++ RK+L++W ++++ A +G EA FE M + P+ VT L+
Sbjct: 292 GCLEEAWRVFHGMT--RKSLITWNTMVTVCANYGNADEAFRLFEWMVCSGVVPDSVTLLA 349
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L A +H GLV+EG++ F+ M + V P I+HYG +IDMLGRAGRL++A + + IP
Sbjct: 350 LLVAYAHKGLVDEGIRLFESMDRDYGVEPRIEHYGAVIDMLGRAGRLQEAYDLLTNIPIP 409
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
N VW LLGAC HG+VEMGE++ +K+LE++ GG Y+L+ +I + +A
Sbjct: 410 -CNDAVWGALLGACRIHGDVEMGEKLIKKLLELKPDEGGYYILLRDIYVAAGQTVEANET 468
Query: 314 RRVVDERNALKFPGRSLV 331
R+ + A K PG S V
Sbjct: 469 RQAMLASRARKNPGCSWV 486
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 129/282 (45%), Gaps = 38/282 (13%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G+L YA +F++MP + +I + + + F M P + + +
Sbjct: 55 GDLRYAHRMFDQMPHPTTFFYNTLIRAHAHSTTPSLSSLSFNLMRQ-NNVAPDQFSFNFL 113
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI---- 146
+ + + + +HG K GF H+HV N LI YA G A ++FED+
Sbjct: 114 LKSRSRTTPLTHHNDVHGAVLKFGF-CRHLHVQNGLIHFYANRGMTLLARRVFEDVLQLG 172
Query: 147 -----------------------------SVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
+ ++++VSWT++++G++ +EA+E F
Sbjct: 173 LEVDVVSWSGLLVAHVKAGELEVARRVFDEMPQRDVVSWTAMLTGYSQAKRPREALELFG 232
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
M++ + P+ VT +S+++AC+ G +E G+ + VEE + LIDM G+
Sbjct: 233 EMRRSGVWPDEVTMVSLVSACASLGDMETGM-MVHRFVEENGFGWMVALCNALIDMYGKC 291
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERV 279
G LE+A +V G+ + +++ W T++ C+ +GN + R+
Sbjct: 292 GCLEEAWRVFHGMTRK--SLITWNTMVTVCANYGNADEAFRL 331
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 62/167 (37%), Gaps = 35/167 (20%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L++ ++F + ++L+TWN M+T +G + A LFE M C VV
Sbjct: 294 LEEAWRVFHGMTRKSLITWNTMVTVCANYGNADEAFRLFEWMVCSGVV------------ 341
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDV-RNCQLIHGYGEKRGFNAFHI 120
P +T+LA+ A G V +L G I
Sbjct: 342 --------------------PDSVTLLALLVAYAHKGLVDEGIRLFESMDRDYGVEP-RI 380
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 167
+ID + G + A L +I + + V W +++ +HG
Sbjct: 381 EHYGAVIDMLGRAGRLQEAYDLLTNIPIPCNDAV-WGALLGACRIHG 426
>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 118/329 (35%), Positives = 194/329 (58%), Gaps = 8/329 (2%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
DG KL EL + ++V N MI G K GE++ +R+LF++M R VSW +I GY R +
Sbjct: 186 DGKKL--ELYDHDVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGK 243
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
AL LF +M E E SE T++++ A G +++ + +H Y ++ F ++ V
Sbjct: 244 LMEALELFNKM-QVEGFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFE-LNVIVV 301
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV- 182
+ID Y KCG + +A+++FE + R+ L W SII G AM+G +EA E F +++
Sbjct: 302 TAIIDMYCKCGSVENAVEVFE--TCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESSK 359
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
+LKP+ V+F+ VL AC H G + + +F+ M+ + E+ P IKHY C++D+LG+AG LE+
Sbjct: 360 LLKPDSVSFIGVLTACKHLGAINKARDYFELMMNKYEIEPSIKHYTCIVDVLGQAGLLEE 419
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302
AE++ G+P + + ++W +LL +C H NV++ R +++ E+ YVLM N+ A
Sbjct: 420 AEELIKGMPLK-PDAIIWGSLLSSCRKHRNVQIARRAAQRVYELNPSDASGYVLMSNVHA 478
Query: 303 GVWRYGDAERLRRVVDERNALKFPGRSLV 331
++ +A R ++ E K PG S +
Sbjct: 479 ASNKFEEAIEQRLLMKENLTEKEPGCSSI 507
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 132/318 (41%), Gaps = 41/318 (12%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G + YA LF MP N+ SW II ++R + A++LF M+ + +P +T +V
Sbjct: 75 GNINYAYKLFVRMPNPNLYSWNTIIRAFSRSSTPQFAISLFVDMLYSQ-IQPQYLTYPSV 133
Query: 91 FPAIWQNGDVRNCQLIHGY----------------------------------GEKRGFN 116
F A Q G +HG G+K
Sbjct: 134 FKAYAQLGHAHYGAQLHGRVVKLGLQNDQFICNTIIYMYANGGLMSEARRVFDGKKLELY 193
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
+ N +I YAKCG I + LF+D+ + VSW S+ISG+ +G EA+E F
Sbjct: 194 DHDVVAINSMIMGYAKCGEIDESRNLFDDMIT--RTSVSWNSMISGYVRNGKLMEALELF 251
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
+MQ + + T +S+LNAC+H G ++ G K+ ++ ++ +IDM +
Sbjct: 252 NKMQVEGFEVSEFTMVSLLNACAHLGALQHG-KWVHDYIKRNHFELNVIVVTAIIDMYCK 310
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
G +E A +V P + W +++ + +G+ K LE + D V
Sbjct: 311 CGSVENAVEVFETCPRR--GLSCWNSIIIGLAMNGHEREAFEFFSK-LESSKLLKPDSVS 367
Query: 297 MYNILAGVWRYGDAERLR 314
+L G + R
Sbjct: 368 FIGVLTACKHLGAINKAR 385
>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
mitochondrial [Vitis vinifera]
gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
Length = 688
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 117/319 (36%), Positives = 181/319 (56%), Gaps = 12/319 (3%)
Query: 3 KDGSKLFDELPERNLVTWNVMI-TGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDG 57
K+G ++N + N + T LV K G L++A LFEE+ R+VV W+ II G
Sbjct: 231 KEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAG 290
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
+ R R+ ++++FR+M+A T P+ +T ++ A G ++ + +HGY + G
Sbjct: 291 FARNGRALESISMFRQMLADSVT-PNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVE- 348
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
+ ID YAKCGCI +A ++F + KN+ SW+++I+GF MHG+ EA+ F
Sbjct: 349 LDVKNYTSFIDMYAKCGCIVTAYRVF--CQIPEKNVFSWSTMINGFGMHGLCAEALNLFY 406
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
M+ V PN VTF+SVL+ACSH G +EEG F M + + P +HY C++D+LGRA
Sbjct: 407 EMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRA 466
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297
G++++A + +P+E W LLGAC H E+ E V +K+L +E G YV++
Sbjct: 467 GKIDEALSFINNMPTE-PGASAWGALLGACRIHRRAELAEEVAKKLLPLESDQSGVYVML 525
Query: 298 YNILA--GVWRYGDAERLR 314
NI A G+W RL+
Sbjct: 526 SNIYADVGMWEMVKKTRLK 544
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 136/278 (48%), Gaps = 17/278 (6%)
Query: 2 LKDGSKLFDELP-----ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIID 56
L G+KLF L E + ++ + G LE A +FEE+P +N V W +I
Sbjct: 128 LFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIK 187
Query: 57 GYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDV---RNCQLIHGYGEKR 113
G+ + G LF RM + E+ V I G+V + + HG K+
Sbjct: 188 GHLNFSEEFGVFELFSRMRRSGF----ELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKK 243
Query: 114 GFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAV 173
F + + L+D Y KCG + ALKLFE+IS +++V W++II+GFA +G E++
Sbjct: 244 NFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISY--RDVVVWSAIIAGFARNGRALESI 301
Query: 174 ENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDM 233
F +M + PN VTF S++ ACS G +++G M+ L D+K+Y IDM
Sbjct: 302 SMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVEL-DVKNYTSFIDM 360
Query: 234 LGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ G + A +V IP + NV W T++ HG
Sbjct: 361 YAKCGCIVTAYRVFCQIPEK--NVFSWSTMINGFGMHG 396
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 114/271 (42%), Gaps = 6/271 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
R+L+ ++ ++ G L A F + N+ SW I+ +++ L LF+R
Sbjct: 44 HRSLLFGPMIFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKR 103
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M+ S + AV A + + +L H K +V+ L++ Y +
Sbjct: 104 MLKEGKLVDSFNLVFAV-KACFGLSLFQGAKLFHSLAIKLRLEG-DPYVAPALMNVYTEL 161
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + A K+FE++ + KN V W +I G E F RM++ + +
Sbjct: 162 GSLEEAHKVFEEVPL--KNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEG 219
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
++ AC + +EG F +++ + + L+DM + G L+ A K+ I
Sbjct: 220 LIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEI--S 277
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKIL 284
+VVVW ++ + +G + R++L
Sbjct: 278 YRDVVVWSAIIAGFARNGRALESISMFRQML 308
>gi|38347497|emb|CAE05845.2| OSJNBa0091C07.7 [Oryza sativa Japonica Group]
Length = 749
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 192/332 (57%), Gaps = 9/332 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC-RNVVSWTGIIDGYTR 60
L+D ++F+ +P RN+VT N M++ L++ G+LE R LFE++ RN V+W +I GY +
Sbjct: 361 LEDCRRMFEMMPRRNMVTLNSMMSVLLQNGKLEEGRKLFEQIKDERNTVTWNSMISGYVQ 420
Query: 61 MNRSNGALALFRRMVACEYT-EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
++S+ AL LF V C + E S T A+ A G + +++H K F + +
Sbjct: 421 NDQSSEALKLF--AVMCRLSIECSASTFPALLHACATIGTIEQGKMVHALLCKTPFES-N 477
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+V L+D Y+KCGC+ A F + N+ SWTS+I+G A +G EA+ F RM
Sbjct: 478 GYVGTALVDMYSKCGCVSDARAAFS--CIMSPNVASWTSLINGLAQNGHWMEAIVQFARM 535
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
K +KPN +TFL +L A + GLV +G++FF M E V+P ++HY C +D+LGRA R
Sbjct: 536 LKNNVKPNEITFLGILMASARAGLVNKGMRFFHSM-ESYGVVPTVEHYTCAVDLLGRARR 594
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
+ +AEK S +P + VVW LL AC + ++EMGE+V K+ M + YV M N
Sbjct: 595 VREAEKFISKMPIP-ADGVVWGALLTACWYTMDLEMGEKVAEKLFYMGTKHISAYVAMSN 653
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
I A + ++ D ++R + NA K PG S +
Sbjct: 654 IYAKLGKWEDVVKVRTRLRSINAKKEPGCSWI 685
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 131/267 (49%), Gaps = 16/267 (5%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM-PCRNVVSWTGIIDGYTR 60
L LFD L N + W+ M+ LV++ L A L + M P R++ +WT II GY R
Sbjct: 163 LDAARTLFDTLHANNELLWSPMVVALVRFNLLSDALDLLQRMPPSRDLFAWTAIISGYAR 222
Query: 61 MNRSN--GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF 118
+L LF +++A + P+E T +V A + G + + IHG + GF +
Sbjct: 223 GANEYCCKSLELFVQLLAEDGVMPNEFTYDSVLRACVKMGALEFGRSIHGCLIQSGFESE 282
Query: 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER 178
+ +++ L+D Y + G + A+ ++ + + +L++ ++I+GF G ++A F +
Sbjct: 283 QL-ITSALVDLYCRSGAVDDAVMVYNGLQM--PSLITSNTLIAGFISMGRTEDAKLVFSQ 339
Query: 179 MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
M + + ++ ++ A + G +E+ + F+ M ++ ++ +L + G
Sbjct: 340 MT----EHDSGSYNLMIKAYADEGRLEDCRRMFEMMPRR-----NMVTLNSMMSVLLQNG 390
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLG 265
+LE+ K+ I E N V W +++
Sbjct: 391 KLEEGRKLFEQIKDE-RNTVTWNSMIS 416
>gi|125582503|gb|EAZ23434.1| hypothetical protein OsJ_07125 [Oryza sativa Japonica Group]
Length = 596
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 112/317 (35%), Positives = 186/317 (58%), Gaps = 8/317 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D +FD++ R+ V+W MI G + L+ A +F+ MP ++ ++WT +I G+ +
Sbjct: 221 VEDARGVFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQN 280
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR--GFNAFH 119
AL LF RM E P+ +++ A + G V + +HG+ +R G + F+
Sbjct: 281 GEEEIALELFERMTG-EGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFN 339
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+ + N LID Y+KCG + +A+ +F D +ER +++SW S+++GF+ +G GK+++ FERM
Sbjct: 340 VFIHNALIDMYSKCGDMVAAMAVF-DRMLER-DIISWNSMVTGFSHNGQGKQSLAVFERM 397
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
K ++P VTFL+VL ACSH GLV +G + + M ++ V P +HY ID LGR +
Sbjct: 398 LKDEVQPTYVTFLAVLTACSHAGLVSDGRRILESM-QDHGVEPRAEHYAAFIDALGRNRQ 456
Query: 240 LEQAEKVASGIPSEI--TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297
LE+A + G+ S+I W LLGAC HGN+E+ E V + ++E G YV++
Sbjct: 457 LEEASEFIKGLSSKIGLGTTGSWGALLGACHVHGNIEIAEEVAEALFQLEPENSGRYVML 516
Query: 298 YNILAGVWRYGDAERLR 314
NI + ++ DA ++R
Sbjct: 517 SNIYSAAGQWDDARQVR 533
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 135/290 (46%), Gaps = 21/290 (7%)
Query: 9 FDELPERNLVTWNVMITGLVKW-GELEYARSLFEEMP--CRNVVSWTGIIDGYTRMNRSN 65
FD+LP +N ++N ++ L + G L A L + MP RNVVS+ +I R R +
Sbjct: 87 FDDLPHKNAHSYNSLLAALARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRES 146
Query: 66 GALALFRRM-----VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
AL +F ++ + + T+++ A D R+ + +HG G I
Sbjct: 147 EALRVFAQLARDRGLGQQQVAIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVI 206
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
++N ++D Y+K G + A +F+ +++ ++ VSWTS+I+G+ M +AV+ F+ M
Sbjct: 207 -MANAMVDAYSKAGRVEDARGVFDQMTI--RDSVSWTSMIAGYCRASMLDDAVQVFDMMP 263
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ + + ++++ G E L+ F++M E V CL + G +
Sbjct: 264 ----AQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCL-GACAKVGLV 318
Query: 241 EQAEKVAS-----GIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
+ ++V I S+ NV + L+ S G++ V ++LE
Sbjct: 319 ARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRMLE 368
>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
Length = 920
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 113/318 (35%), Positives = 183/318 (57%), Gaps = 9/318 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM- 74
++ WN ++ + G E A SLF E+ ++ ++W G+I G+ + AL +F +M
Sbjct: 481 DISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMG 540
Query: 75 -VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
+Y + T ++ A+ D++ + +HG K G + V+N LI Y KC
Sbjct: 541 QAGAKY---NVFTFISAISALANLADIKQGKQVHGRAVKTGHTS-ETEVANALISLYGKC 596
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G I A +F ++S+ +N VSW +II+ + HG G EA++ F++M++ LKPN VTF+
Sbjct: 597 GSIEDAKMIFSEMSL--RNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIG 654
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VL ACSH GLVEEGL +F M + P HY C++D+LGRAG+L++A + +P
Sbjct: 655 VLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPI- 713
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
N ++WRTLL AC H N+E+GE + +LE+E YVL+ N A ++ + +++
Sbjct: 714 TANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQV 773
Query: 314 RRVVDERNALKFPGRSLV 331
R+++ +R K PGRS +
Sbjct: 774 RKMMKDRGIRKEPGRSWI 791
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 130/258 (50%), Gaps = 7/258 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E ++ V+I K+G L+ AR + E + R+VVSWT +I GY + + ALA F+
Sbjct: 378 ESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKE 437
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M C P I + + A +R IH G+ A I + N L++ YA+C
Sbjct: 438 MQDCG-VWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAA-DISIWNTLVNLYARC 495
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G A LF +I E K+ ++W +ISGF + K+A+ F +M + K N TF+S
Sbjct: 496 GRSEEAFSLFREI--EHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFIS 553
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
++A ++ +++G + + V+ + + LI + G+ G +E A+ + S +
Sbjct: 554 AISALANLADIKQGKQVHGRAVKTGHT-SETEVANALISLYGKCGSIEDAKMIFSEM--S 610
Query: 254 ITNVVVWRTLLGACSFHG 271
+ N V W T++ +CS HG
Sbjct: 611 LRNEVSWNTIITSCSQHG 628
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 130/267 (48%), Gaps = 11/267 (4%)
Query: 2 LKDGSKLFDELPERNL----VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDG 57
L+ G +L L + + +T ++ VK G++E A +F NVV W ++
Sbjct: 261 LQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVA 320
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
Y +++ + +F +M A P++ T + G + + IH K GF +
Sbjct: 321 YGQISDLAKSFEIFGQMQATG-IHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFES 379
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
++VS LID Y+K GC+ A K+ E +E++++VSWTS+I+G+ H +EA+ F+
Sbjct: 380 -DMYVSGVLIDMYSKYGCLDKARKILE--MLEKRDVVSWTSMIAGYVQHDFCEEALATFK 436
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
MQ + P+ + S +AC+ + +GL+ + V DI + L+++ R
Sbjct: 437 EMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHAR-VYVSGYAADISIWNTLVNLYARC 495
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLL 264
GR E+A + I E + + W L+
Sbjct: 496 GRSEEAFSLFREI--EHKDEITWNGLI 520
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 151/335 (45%), Gaps = 48/335 (14%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N++I K G + AR +F+E+ R+ VSW ++ GY + A L+ +M +T
Sbjct: 82 NLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQM---HWT 138
Query: 81 E--PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFS 138
P+ + +V A + ++IH K+ F + V N LI Y G
Sbjct: 139 AVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCS-ETFVGNALIALYLGFGSFKL 197
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198
A ++F D+ + V++ ++ISG A G G+ A++ F+ MQ L+P+ VT S+L AC
Sbjct: 198 AERVFCDMLFCDR--VTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAAC 255
Query: 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
+ G +++G + +++ I G L+D+ + G +E A + + + TNVV
Sbjct: 256 ASVGDLQKGKQLHSYLLKAGMSFDYITE-GSLLDLYVKCGDIETAHDIFN--LGDRTNVV 312
Query: 259 VWRTLLGA-----------------------------------CSFHGNVEMGERVTRKI 283
+W +L A C+ G +E+GE++
Sbjct: 313 LWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHS-- 370
Query: 284 LEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVD 318
L ++ G+ D + ++ +YG ++ R++++
Sbjct: 371 LSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILE 405
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 102/212 (48%), Gaps = 10/212 (4%)
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 165
IH RG A + + N LID YAK G ++ A ++F+++S ++ VSW +++SG+A
Sbjct: 65 IHATSVVRGLGADRL-IGNLLIDLYAKNGLVWQARQVFKELS--SRDHVSWVAMLSGYAQ 121
Query: 166 HGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIK 225
G+GKEA + +M + P SVL+AC+ G L +G + V + +
Sbjct: 122 SGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQG-RMIHAQVYKQAFCSETF 180
Query: 226 HYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
LI + G + AE+V + + V + TL+ S H GE + E
Sbjct: 181 VGNALIALYLGFGSFKLAERVFCDML--FCDRVTFNTLI---SGHAQCGHGECALQIFDE 235
Query: 286 ME-RGYGGDYVLMYNILAGVWRYGDAERLRRV 316
M+ G D V + ++LA GD ++ +++
Sbjct: 236 MQLSGLRPDCVTVASLLAACASVGDLQKGKQL 267
>gi|115446683|ref|NP_001047121.1| Os02g0555100 [Oryza sativa Japonica Group]
gi|113536652|dbj|BAF09035.1| Os02g0555100 [Oryza sativa Japonica Group]
Length = 596
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 112/317 (35%), Positives = 186/317 (58%), Gaps = 8/317 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D +FD++ R+ V+W MI G + L+ A +F+ MP ++ ++WT +I G+ +
Sbjct: 221 VEDARGVFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQN 280
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR--GFNAFH 119
AL LF RM E P+ +++ A + G V + +HG+ +R G + F+
Sbjct: 281 GEEEIALELFERMTG-EGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFN 339
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+ + N LID Y+KCG + +A+ +F D +ER +++SW S+++GF+ +G GK+++ FERM
Sbjct: 340 VFIHNALIDMYSKCGDMVAAMAVF-DRMLER-DIISWNSMVTGFSHNGQGKQSLAVFERM 397
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
K ++P VTFL+VL ACSH GLV +G + + M ++ V P +HY ID LGR +
Sbjct: 398 LKDEVQPTYVTFLAVLTACSHAGLVSDGRRILESM-QDHGVEPRAEHYAAFIDALGRNRQ 456
Query: 240 LEQAEKVASGIPSEI--TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297
LE+A + G+ S+I W LLGAC HGN+E+ E V + ++E G YV++
Sbjct: 457 LEEASEFIKGLSSKIGLGTTGSWGALLGACHVHGNIEIAEEVAEALFQLEPENSGRYVML 516
Query: 298 YNILAGVWRYGDAERLR 314
NI + ++ DA ++R
Sbjct: 517 SNIYSAAGQWDDARQVR 533
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 111/230 (48%), Gaps = 15/230 (6%)
Query: 9 FDELPERNLVTWNVMITGLVKW-GELEYARSLFEEMP--CRNVVSWTGIIDGYTRMNRSN 65
FD+LP +N ++N ++ L + G L A L + MP RNVVS+ +I R R +
Sbjct: 87 FDDLPHKNAHSYNSLLAALARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRES 146
Query: 66 GALALFRRM-----VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
AL +F ++ + + T+++ A D R+ + +HG G I
Sbjct: 147 EALRVFAQLARDRGLGQQQVAIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVI 206
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
++N ++D Y+K G + A +F+ +++ ++ VSWTS+I+G+ M +AV+ F+ M
Sbjct: 207 -MANAMVDAYSKAGRVEDARGVFDQMTI--RDSVSWTSMIAGYCRASMLDDAVQVFDMMP 263
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCL 230
+ + + ++++ G E L+ F++M E V CL
Sbjct: 264 ----AQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCL 309
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 37/168 (22%)
Query: 121 HVSNCLIDTYAKC-GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
H N L+ A+ G + AL+L + + +N+VS+ ++IS A HG EA+ F ++
Sbjct: 96 HSYNSLLAALARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQL 155
Query: 180 --------QKVVLKPNRVTFLSVLNACS-----------HGGLVEEGLKFFDKMVEECEV 220
Q+V + +R T +S +AC+ HG +V G++ M
Sbjct: 156 ARDRGLGQQQVAI--DRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMAN---- 209
Query: 221 LPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL-GAC 267
++D +AGR+E A V + I + V W +++ G C
Sbjct: 210 --------AMVDAYSKAGRVEDARGVFDQMT--IRDSVSWTSMIAGYC 247
>gi|125589995|gb|EAZ30345.1| hypothetical protein OsJ_14392 [Oryza sativa Japonica Group]
Length = 704
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 192/332 (57%), Gaps = 9/332 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC-RNVVSWTGIIDGYTR 60
L+D ++F+ +P RN+VT N M++ L++ G+LE R LFE++ RN V+W +I GY +
Sbjct: 316 LEDCRRMFEMMPRRNMVTLNSMMSVLLQNGKLEEGRKLFEQIKDERNTVTWNSMISGYVQ 375
Query: 61 MNRSNGALALFRRMVACEYT-EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
++S+ AL LF V C + E S T A+ A G + +++H K F + +
Sbjct: 376 NDQSSEALKLF--AVMCRLSIECSASTFPALLHACATIGTIEQGKMVHALLCKTPFES-N 432
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+V L+D Y+KCGC+ A F + N+ SWTS+I+G A +G EA+ F RM
Sbjct: 433 GYVGTALVDMYSKCGCVSDARAAFS--CIMSPNVASWTSLINGLAQNGHWMEAIVQFARM 490
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
K +KPN +TFL +L A + GLV +G++FF M E V+P ++HY C +D+LGRA R
Sbjct: 491 LKNNVKPNEITFLGILMASARAGLVNKGMRFFHSM-ESYGVVPTVEHYTCAVDLLGRARR 549
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
+ +AEK S +P + VVW LL AC + ++EMGE+V K+ M + YV M N
Sbjct: 550 VREAEKFISKMPIP-ADGVVWGALLTACWYTMDLEMGEKVAEKLFYMGTKHISAYVAMSN 608
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
I A + ++ D ++R + NA K PG S +
Sbjct: 609 IYAKLGKWEDVVKVRTRLRSINAKKEPGCSWI 640
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 131/267 (49%), Gaps = 16/267 (5%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEM-PCRNVVSWTGIIDGYTR 60
L LFD L N + W+ M+ LV++ L A L + M P R++ +WT II GY R
Sbjct: 118 LDAARTLFDTLHANNELLWSPMVVALVRFNLLSDALDLLQRMPPSRDLFAWTAIISGYAR 177
Query: 61 MNRSN--GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF 118
+L LF +++A + P+E T +V A + G + + IHG + GF +
Sbjct: 178 GANEYCCKSLELFVQLLAEDGVMPNEFTYDSVLRACVKMGALEFGRSIHGCLIQSGFESE 237
Query: 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER 178
+ +++ L+D Y + G + A+ ++ + + +L++ ++I+GF G ++A F +
Sbjct: 238 QL-ITSALVDLYCRSGAVDDAVMVYNGL--QMPSLITSNTLIAGFISMGRTEDAKLVFSQ 294
Query: 179 MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
M + + ++ ++ A + G +E+ + F+ M ++ ++ +L + G
Sbjct: 295 MT----EHDSGSYNLMIKAYADEGRLEDCRRMFEMMPRR-----NMVTLNSMMSVLLQNG 345
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLG 265
+LE+ K+ I E N V W +++
Sbjct: 346 KLEEGRKLFEQIKDE-RNTVTWNSMIS 371
>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Brachypodium distachyon]
Length = 654
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 179/310 (57%), Gaps = 5/310 (1%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
+I K G + YA S+F MP RNVVSW+ +I Y + R A+ LF+ M+A +
Sbjct: 218 TTLIDCYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDAD 277
Query: 81 -EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSA 139
P+ ITI++V A + + +L+H Y +RGF++ + V N L+ Y +CGC+
Sbjct: 278 LVPNSITIVSVLNACAGVNALSHGKLLHAYILRRGFDSL-VSVLNALMAMYMRCGCLEVG 336
Query: 140 LKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS 199
+F+ I R+++VSW S+ISG+ MHG G EAV+ FE M V P+ +TF+SVL ACS
Sbjct: 337 RHIFKWIG-HRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACS 395
Query: 200 HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVV 259
H GLV EG F+ MVE V P +HY C++D+LGRAG+L++A ++ + E + V
Sbjct: 396 HAGLVNEGKMLFESMVEY-GVTPRAEHYACMVDLLGRAGQLDEAMELIRSMHIE-PSPQV 453
Query: 260 WRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319
W LLGAC HG+VE E + ++E G+YVL+ +I A + L+ +++E
Sbjct: 454 WGALLGACRIHGHVEYAEIACSHLFDLEPRNAGNYVLLADIYARAKLHNQVGVLKELLEE 513
Query: 320 RNALKFPGRS 329
K G S
Sbjct: 514 HALEKVTGCS 523
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 119/266 (44%), Gaps = 33/266 (12%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM-------V 75
+I G L AR +F+E P +N+ W ++ + + ALA M
Sbjct: 114 LIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALADHGDEALARLADMGRLGVPVD 173
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
+ YT + I + VR +H + +RG+ A H HV+ LID YAK G
Sbjct: 174 SYSYTHGLKACIAVSASHAPASARVRE---VHAHAIRRGY-ALHTHVATTLIDCYAKLGI 229
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM--QKVVLKPNRVTFLS 193
+ A +F ++ +N+VSW+++I +A + +A+E F+ M L PN +T +S
Sbjct: 230 VRYAESVFA--AMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPNSITIVS 287
Query: 194 VLNAC------SHGGLVEEGL--KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
VLNAC SHG L+ + + FD +V VL L+ M R G LE
Sbjct: 288 VLNACAGVNALSHGKLLHAYILRRGFDSLV---SVL------NALMAMYMRCGCLEVGRH 338
Query: 246 VASGIPSEITNVVVWRTLLGACSFHG 271
+ I +VV W +L+ HG
Sbjct: 339 IFKWI-GHRRDVVSWNSLISGYGMHG 363
>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
Length = 499
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 194/330 (58%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ ++FD + R++ +W ++ +E AR +F+EMP R+VVS++ ++ Y R
Sbjct: 138 MDSARRVFDGMGYRDIASWTTLLACYANSCSVEAARKVFDEMPERSVVSYSAMLAAYVRG 197
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
NR AL LFR + + + EPS+ +++V A G + + ++ + +
Sbjct: 198 NRFREALELFRELFSVK-IEPSDSCVMSVLCACANLGALDVGRWVYSFVCHSKGDYVDSR 256
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
++ LID + KCG I AL +FE + K++ WT+++SG AMHG+G++ +E FE+M
Sbjct: 257 IATALIDMFFKCGSIEHALLVFE--GAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVD 314
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KP+ VTF+++L+ CSH GLV EGL +FD+M + V P ++H+GC++D+LGRAG ++
Sbjct: 315 SGIKPDEVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVEPTVEHFGCVVDLLGRAGLID 374
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
QA ++ S +P E N +W LL AC + NVE+GE + +++ E G Y+ + ++
Sbjct: 375 QAMQLISEMPFE-PNAAIWGALLNACRVYKNVEVGELAAQWLIKDEPWNGALYMTLLSLY 433
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
R+ + E+++ + E K PG SL+
Sbjct: 434 REAGRWDEVEKVKLKMKEVGCRKGPGCSLI 463
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 117/319 (36%), Positives = 191/319 (59%), Gaps = 9/319 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL N +I K GE+E A LF+ + ++V+SW +I GYT +N AL LF+ M+
Sbjct: 269 NLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEML 328
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR---GFNAFHIHVSNCLIDTYAK 132
P+++T+L++ PA Q G + + IH Y +KR NA + S LID YAK
Sbjct: 329 RSG-ENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTS--LIDMYAK 385
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
CG I +A ++F S+ + L + ++I GFAMHG A + F RM+K ++P+ +TF+
Sbjct: 386 CGDIEAAHQVFN--SMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFV 443
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
+L+ACSH G+++ G + F M + ++ P ++HYGC+ID+LG G ++AE++ + +
Sbjct: 444 GLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTM 503
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312
E + V+W +LL AC HGNVE+GE +K++++E G YVL+ NI A R+ +
Sbjct: 504 E-PDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVAN 562
Query: 313 LRRVVDERNALKFPGRSLV 331
+R +++++ K PG S +
Sbjct: 563 IRALLNDKGMKKVPGCSSI 581
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 160/323 (49%), Gaps = 50/323 (15%)
Query: 3 KDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
KD K+FD R++V++ +ITG G +E A+ +F+E+P ++VVSW II GY
Sbjct: 155 KDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTG 214
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV 122
+ AL LF+ M+ +P E T++ V A Q+G ++ + +H + + G + ++ +
Sbjct: 215 NNKEALDLFKEMMKTN-VKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGS-NLKI 272
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
N LID Y+KCG + +A LF+ +S K+++SW ++I G+ + KEA+ F+ M +
Sbjct: 273 VNALIDLYSKCGEVETACGLFQGLS--NKDVISWNTMIGGYTHLNLYKEALLLFQEMLRS 330
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEG---LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
PN VT LS+L AC+ G ++ G + DK ++ ++ LIDM + G
Sbjct: 331 GENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLR--TSLIDMYAKCGD 388
Query: 240 LEQAEKVASGI-------------------------------------PSEITNVVVWRT 262
+E A +V + + P +IT V
Sbjct: 389 IEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFV----G 444
Query: 263 LLGACSFHGNVEMGERVTRKILE 285
LL ACS G +++G R+ R + +
Sbjct: 445 LLSACSHSGMLDLGRRIFRSMTQ 467
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 72/145 (49%), Gaps = 5/145 (3%)
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198
A+ +FE +++ NL+ W ++ G A+ A++ + M + L PN TF +L +C
Sbjct: 56 AISVFE--TIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSC 113
Query: 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
+ + +EG + +++ L D+ + LI M + GR + A KV G S +VV
Sbjct: 114 AKLKVSKEGQQIHGHVLKLGYEL-DLYVHTSLISMYVKNGRWKDAHKVFDG--SSHRDVV 170
Query: 259 VWRTLLGACSFHGNVEMGERVTRKI 283
+ L+ + G +E +++ +I
Sbjct: 171 SYTALITGYASRGYIESAQKMFDEI 195
>gi|413939497|gb|AFW74048.1| hypothetical protein ZEAMMB73_972326 [Zea mays]
Length = 576
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 108/317 (34%), Positives = 185/317 (58%), Gaps = 4/317 (1%)
Query: 7 KLFDELPER--NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
K FD E+ ++ W+VM++G + GE+ AR LF+EMP +++V+WT ++ GY + R
Sbjct: 257 KTFDLFGEKVKDVRVWSVMVSGYARVGEIGMARKLFDEMPNKDLVAWTVLVGGYVQAGRY 316
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
AL LF M A E E+T++ V A QN + + +H + G + + V+
Sbjct: 317 KEALGLFEEMEAAGL-EADEMTVVTVLSACAQNDAISLVKRLHYRMNQNGLVSRNARVAT 375
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
+ YAK GCI +A+ +F I+ E K + + ++I G A HG G++A+ F++M+ + L
Sbjct: 376 SFVHIYAKHGCIQTAMDVFRGITDEFKTVELFNAMIHGLAHHGYGEKAISLFDKMESLGL 435
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
+P+ +TF+ +L ACS LVE+G K F M+++ V PD+KH+ C+ D+LGRAGRL+ A
Sbjct: 436 QPDDITFVGILCACSRSNLVEQGCKMFSSMLDKYGVKPDVKHHACMADLLGRAGRLDDAY 495
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+P + N+V+W +LL AC HGN ++ + V R+IL ++ Y + + + + +
Sbjct: 496 NFIQNMPFK-ANLVIWSSLLTACKIHGNNKIRKLVERQILGLDATYKPEKLTLSGLFSDE 554
Query: 305 WRYGDAERLRRVVDERN 321
R + R R+ + ++
Sbjct: 555 KRKELSARARKAIKHKS 571
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 137/327 (41%), Gaps = 42/327 (12%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
++ N ++ +G A LF+EMP R+ VS+ +I Y + R AL +FR MV
Sbjct: 131 DVFAANSLLHFYAAFGLHALACKLFDEMPTRDTVSFNTLIGSYVQSGRVERALVVFRNMV 190
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEK----RGFNAFHIHVSNCLIDTYA 131
+ E TI A+ A GD + HG+ + R ++ + + L+D Y
Sbjct: 191 EGGF-RLDEWTIRALLGACAGLGDFMVAKAAHGFASRTLRHRLLDSGEVVIG--LVDMYV 247
Query: 132 KCGCIFSALKLFE-------DISV------------------------ERKNLVSWTSII 160
KCG + A K F+ D+ V K+LV+WT ++
Sbjct: 248 KCGAVHLARKTFDLFGEKVKDVRVWSVMVSGYARVGEIGMARKLFDEMPNKDLVAWTVLV 307
Query: 161 SGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEV 220
G+ G KEA+ FE M+ L+ + +T ++VL+AC+ + + +M + V
Sbjct: 308 GGYVQAGRYKEALGLFEEMEAAGLEADEMTVVTVLSACAQNDAISLVKRLHYRMNQNGLV 367
Query: 221 LPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVT 280
+ + + + + G ++ A V GI E V ++ ++ + HG GE+
Sbjct: 368 SRNARVATSFVHIYAKHGCIQTAMDVFRGITDEFKTVELFNAMIHGLAHHG---YGEKAI 424
Query: 281 RKILEMER-GYGGDYVLMYNILAGVWR 306
+ME G D + IL R
Sbjct: 425 SLFDKMESLGLQPDDITFVGILCACSR 451
>gi|186478293|ref|NP_172391.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099767|sp|O80488.1|PPR23_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09190
gi|3249103|gb|AAC24086.1| Contains similarity to membrane-associated salt-inducible protein
homolog TM021B04.10 gb|2191192 from A. thaliana BAC
gb|AF007271 [Arabidopsis thaliana]
gi|28393182|gb|AAO42022.1| unknown protein [Arabidopsis thaliana]
gi|332190289|gb|AEE28410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 484
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 114/331 (34%), Positives = 189/331 (57%), Gaps = 5/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ D K+FDE+ ERN+V WN+MI G G++E LF++M R++VSW +I ++
Sbjct: 153 MGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSKC 212
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R AL LF M+ + +P E T++ V P G + + IH E G I
Sbjct: 213 GRDREALELFCEMIDQGF-DPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKDFIT 271
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-Q 180
V N L+D Y K G + +A +F + +R+N+VSW ++ISG A++G G+ ++ F+ M +
Sbjct: 272 VGNALVDFYCKSGDLEAATAIFRKM--QRRNVVSWNTLISGSAVNGKGEFGIDLFDAMIE 329
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ + PN TFL VL CS+ G VE G + F M+E ++ +HYG ++D++ R+GR+
Sbjct: 330 EGKVAPNEATFLGVLACCSYTGQVERGEELFGLMMERFKLEARTEHYGAMVDLMSRSGRI 389
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
+A K +P N +W +LL AC HG+V++ E +++++E G G+YVL+ N+
Sbjct: 390 TEAFKFLKNMPVN-ANAAMWGSLLSACRSHGDVKLAEVAAMELVKIEPGNSGNYVLLSNL 448
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ D E++R ++ + K G+S +
Sbjct: 449 YAEEGRWQDVEKVRTLMKKNRLRKSTGQSTI 479
>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
Length = 603
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 175/316 (55%), Gaps = 11/316 (3%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I K + A +FE + +++ SW II + + +G L LF +M+
Sbjct: 250 NALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGIL 309
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN-------AFHIHVSNCLIDTYAKC 133
P +TI V PA + + + IHGY G ++ VSN ++D YAKC
Sbjct: 310 -PDLVTITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKC 368
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + +ALK+F+ +S +K++ SW +I G+ MHG EA+ F +M + KPN VT +
Sbjct: 369 GSMNNALKIFDSMS--KKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVG 426
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VL+AC+H G V G F +M V+P I+HY C+IDMLGRAG LE A ++ +P +
Sbjct: 427 VLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQ 486
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
N VVWR LLGAC HGN E+ E R++L++E + G YVLM N+ + RY + +
Sbjct: 487 -ANPVVWRALLGACRLHGNAELAEIAARQVLQLEPEHCGSYVLMSNVYGVIGRYEEVLEV 545
Query: 314 RRVVDERNALKFPGRS 329
R+ + E+N K PG S
Sbjct: 546 RKTMKEQNVKKTPGCS 561
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 130/265 (49%), Gaps = 13/265 (4%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E ++ + ++ +K G +E A+ +F E+ R+VV W +I+GY ++ + AL +FRR
Sbjct: 142 ELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRR 201
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M + PS TI + GD+ N + +HG K G+++ + VSN LID Y KC
Sbjct: 202 M-HVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDS-GVSVSNALIDMYGKC 259
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
I AL +FE I+ K++ SW SIIS G + F++M + P+ VT +
Sbjct: 260 KHIGDALIIFEMIN--EKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITT 317
Query: 194 VLNACSHGGLVEEGLKFFDKMV-------EECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
VL ACSH + G + M+ +E + ++ ++DM + G + A K+
Sbjct: 318 VLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKI 377
Query: 247 ASGIPSEITNVVVWRTLLGACSFHG 271
+ + +V W ++ HG
Sbjct: 378 FDSMSKK--DVASWNIMIMGYGMHG 400
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 100/237 (42%), Gaps = 41/237 (17%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+D ERN+ +N +I+G V G +++M V+ D YT
Sbjct: 69 FYDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMP-----DKYT-------- 115
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQN-GDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
FP + + +V + IHG K G + V + L
Sbjct: 116 -----------------------FPCVVRTCCEVMEVKKIHGCLLKMGLE-LDVFVGSAL 151
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
++TY K G + A K+F ++S+ +++V W ++I+G+A G EA+E F RM + P
Sbjct: 152 VNTYLKNGSMEDAQKVFGELSI--RDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAP 209
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
+R T +L+ + G ++ G K +V + + LIDM G+ + A
Sbjct: 210 SRFTITGILSVFASRGDLDNG-KTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDA 265
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 2/152 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL+ N ++ K G + A +F+ M ++V SW +I GY + AL +F +M
Sbjct: 354 NLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMC 413
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
E+ +P+E+T++ V A G V + +L E I C+ID + G
Sbjct: 414 EAEF-KPNEVTLVGVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDMLGRAGH 472
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHG 167
+ A ++ + + ++ N V W +++ +HG
Sbjct: 473 LEDAYEIVQKMPIQ-ANPVVWRALLGACRLHG 503
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 83/166 (50%), Gaps = 23/166 (13%)
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
LI+ Y+KCG + A+ +F D ER N+ ++ +IISGF +G+ + + +++M+ +
Sbjct: 52 LINMYSKCGQMGEAILVFYDPCHER-NVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVM 110
Query: 186 PNRVTFLSVLNACS--------HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
P++ TF V+ C HG L++ GL+ D+ L++ +
Sbjct: 111 PDKYTFPCVVRTCCEVMEVKKIHGCLLKMGLEL------------DVFVGSALVNTYLKN 158
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
G +E A+KV + I +VV+W ++ + G ++ V R++
Sbjct: 159 GSMEDAQKVFGEL--SIRDVVLWNAMINGYAKIGCLDEALEVFRRM 202
>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
[Vitis vinifera]
Length = 799
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 114/331 (34%), Positives = 190/331 (57%), Gaps = 7/331 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + ++F+++P ++LV+WN +++G V G ++ A+S FEEMP RN+++WT +I G +
Sbjct: 346 VDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQN 405
Query: 62 NRSNGALALFRRMVACEYTEPSEITIL-AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+L LF RM + E EP + A+ W + QL H + GF++ +
Sbjct: 406 GFGEESLKLFNRMKS-EGFEPCDYAFAGAIIACAWLAALMHGRQL-HAQLVRLGFDS-SL 462
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
N LI YAKCG + +A LF +++ + VSW ++I+ HG G +A+E FE M
Sbjct: 463 SAGNALITMYAKCGVVEAAHCLF--LTMPYLDSVSWNAMIAALGQHGHGAQALELFELML 520
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
K + P+R+TFL+VL+ CSH GLVEEG ++F M + P HY +ID+L RAG+
Sbjct: 521 KEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKF 580
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
+A+ + +P E +W LL C HGN+++G + ++ E+ + G YVL+ N+
Sbjct: 581 SEAKDMIETMPVE-PGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNM 639
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A V R+ D ++R+++ ++ K PG S +
Sbjct: 640 YATVGRWDDVAKVRKLMRDKGVKKEPGCSWI 670
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 126/268 (47%), Gaps = 14/268 (5%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
KLFDE+ ER+ ++W MI G V+ GEL+ AR + M + VV+W +I GY
Sbjct: 215 KLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLE 274
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY---GEKRGFNAFHIHVS 123
AL +FR+M + E T +V A G + + +H Y E R F + V+
Sbjct: 275 ALEMFRKMYLLG-IQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVN 333
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N L Y KCG + A ++F + V K+LVSW +I+SG+ G EA FE M
Sbjct: 334 NALATLYWKCGKVDEARQVFNQMPV--KDLVSWNAILSGYVNAGRIDEAKSFFEEMP--- 388
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA----GR 239
+ N +T+ +++ + G EE LK F++M E D G +I A GR
Sbjct: 389 -ERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGR 447
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGAC 267
A+ V G S ++ T+ C
Sbjct: 448 QLHAQLVRLGFDSSLSAGNALITMYAKC 475
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 133/308 (43%), Gaps = 50/308 (16%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDGYT 59
L LFDE+ + ++V +I G AR +F P R+ V + +I GY+
Sbjct: 66 LVSAHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYS 125
Query: 60 RMNRSNGALALFRRMVACEYTEPSEITILAVFPAI-WQNGDVRNCQLIHGYGEKRGFNAF 118
N GA+ LFR ++ + P T +V A+ D + CQ IH K G + F
Sbjct: 126 HNNDGFGAIELFRDLLRNGF-RPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSG-SGF 183
Query: 119 HIHVSNCLIDTYAKCG---------CIFSALKLFEDIS---------------------- 147
V N L+ + KC + +A KLF++++
Sbjct: 184 VTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDA 243
Query: 148 -------VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
+ K +V+W ++ISG+ HG EA+E F +M + ++ + T+ SVL+AC++
Sbjct: 244 ARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACAN 303
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHY----GCLIDMLGRAGRLEQAEKVASGIPSEITN 256
G G K + E P + L + + G++++A +V + +P + +
Sbjct: 304 AGFFLHG-KQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMP--VKD 360
Query: 257 VVVWRTLL 264
+V W +L
Sbjct: 361 LVSWNAIL 368
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 118/319 (36%), Positives = 190/319 (59%), Gaps = 9/319 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL N +I K GE+E A LF + ++V+SW +I GYT +N AL LF+ M+
Sbjct: 229 NLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEML 288
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR---GFNAFHIHVSNCLIDTYAK 132
+ P+++T+L++ A G + + IH Y +KR NA + S LID Y+K
Sbjct: 289 RSGES-PNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTS--LIDMYSK 345
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
CG I +A ++F S+ K+L +W ++I GFAMHG A + F RM+K +KP+ +TF+
Sbjct: 346 CGDIEAAHQVFN--SMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFV 403
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
+L+ACSH G+++ G F M ++ P ++HYGC+ID+LG +G ++AE++ S +
Sbjct: 404 GLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTM 463
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312
E + V+W +LL AC HGNVE+GE+ + + ++E G YVL+ NI A R+ + R
Sbjct: 464 E-PDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVAR 522
Query: 313 LRRVVDERNALKFPGRSLV 331
+R +++++ K PG S +
Sbjct: 523 IRGLLNDKGMKKVPGCSSI 541
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 148/273 (54%), Gaps = 11/273 (4%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+D K+FD R++V++ ++TG G +E AR++F+E+P ++VVSW +I GY
Sbjct: 114 LEDAHKVFDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVET 173
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL LF+ M+ P E T++ V A ++G + + +H + GF + ++
Sbjct: 174 GNYKEALELFKEMMKTN-VRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGS-NLK 231
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N LID Y+KCG + +A LF + + K+++SW +I G+ + KEA+ F+ M +
Sbjct: 232 IVNALIDFYSKCGEMETACGLF--LGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLR 289
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEG---LKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
PN VT LS+L+AC+H G ++ G + DK ++ ++ LIDM + G
Sbjct: 290 SGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLR--TSLIDMYSKCG 347
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+E A +V + + + ++ W ++ + HG
Sbjct: 348 DIEAAHQVFNSMLHK--SLPAWNAMIFGFAMHG 378
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 5/145 (3%)
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198
A+ +FE +++ NL+ W ++ G A+ A++ + M + L PN TF +L +C
Sbjct: 16 AISVFE--TIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSC 73
Query: 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
+ +EGL+ +++ L D+ + LI M + RLE A KV S +VV
Sbjct: 74 AKLKASKEGLQIHGHVLKLGYEL-DLYVHTSLISMYVQNERLEDAHKVFD--RSSHRDVV 130
Query: 259 VWRTLLGACSFHGNVEMGERVTRKI 283
+ L+ + G +E + +I
Sbjct: 131 SYTALVTGYASRGYIESARNMFDEI 155
>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 119/335 (35%), Positives = 191/335 (57%), Gaps = 18/335 (5%)
Query: 2 LKDGSKLFDEL-PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L+ +FDEL +RN VTWN+MI+ + G+L AR LF+ MP R+VVSW +I GY +
Sbjct: 309 LEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQ 368
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNC----QLIHGYGEKRGFN 116
S ++ LF+ M++C +P E+TI +V A G ++ ++ K G +
Sbjct: 369 NGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGIS 428
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
F N LI Y+KCG + A ++F+ + +++VS+ ++ISGFA +G GKEA++
Sbjct: 429 GF-----NSLIFMYSKCGSVADAHRIFQTMGT--RDVVSFNTLISGFAANGHGKEAIKLV 481
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
M++ ++P+ VT++ VL ACSH GL+ EG F + P + HY C++D+LGR
Sbjct: 482 LTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQA-----PTVDHYACMVDLLGR 536
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
AG L++A+ + +P + + V+ +LL A H V +GE K+ E+E G+YVL
Sbjct: 537 AGELDEAKMLIQSMPMK-PHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVL 595
Query: 297 MYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ NI A R+ D +R+R ++ + K G S V
Sbjct: 596 LSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWV 630
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 156/335 (46%), Gaps = 44/335 (13%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LF+ +P RN++TW M+TG K G+LE AR F+EMP R+VVSW + Y + A
Sbjct: 183 LFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEA 242
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG--FNAFHIHVSNC 125
L LF +M+ E P + T + + GD I +++ N+F V
Sbjct: 243 LNLFHQMLE-EGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSF---VKTA 298
Query: 126 LIDTYAKCGCIFSALKLFEDISVER------------------------------KNLVS 155
L+D +AK G + A +F+++ +R +++VS
Sbjct: 299 LLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVS 358
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFLSVLNACSHGGLVEEGLKFFDKM 214
W S+I+G+A +G ++E F+ M + ++P+ VT SVL+AC H G ++ D +
Sbjct: 359 WNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLD-I 417
Query: 215 VEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
V E + I + LI M + G + A ++ + + +VV + TL+ + +G+
Sbjct: 418 VREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTR--DVVSFNTLISGFAANGH-- 473
Query: 275 MGERVTRKILEM-ERGYGGDYVLMYNILAGVWRYG 308
G+ + +L M E G D+V +L G
Sbjct: 474 -GKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAG 507
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 124/296 (41%), Gaps = 28/296 (9%)
Query: 35 YARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT---EPSEITILAVF 91
Y S+F P + ++ ++ Y+RM N ++LF+ C ++ P + +
Sbjct: 52 YVDSIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFK----CTHSLNLRPQPFVYIYLI 107
Query: 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151
++G+ + H Y K G H + N ++D YAK G + A LFE ++ +
Sbjct: 108 KLAGKSGN-----MFHAYVLKLGHIDDHF-IRNAILDMYAKNGQVDLARNLFEQMA--ER 159
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
L W S+ISG G EAV F M N +T+ S++ + G +E ++F
Sbjct: 160 TLADWNSMISGCWKSGNETEAVVLFNMMP----ARNIITWTSMVTGYAKMGDLESARRYF 215
Query: 212 DKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
D+M E V + + + + GI + T W + +CS G
Sbjct: 216 DEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDT---TWVVTISSCSSIG 272
Query: 272 NVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE----RNAL 323
+ + + + R I ++ + + +L ++G+ E R + DE RNA+
Sbjct: 273 DPTLADSILRMI--DQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAV 326
>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
Length = 629
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 116/304 (38%), Positives = 174/304 (57%), Gaps = 9/304 (2%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
+E A +FE M +++ SW I+ + + +G L L RM+ +P +T+ V P
Sbjct: 288 IEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAG-IQPDLVTVTTVLP 346
Query: 93 AIWQNGDVRNCQLIHGYG-----EKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS 147
A + + + IHGY K G + + + N +ID YAKCG + A +FE +S
Sbjct: 347 ACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMS 406
Query: 148 VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEG 207
K++ SW +I G+ MHG G EA+E F RM +V LKP+ VTF+ VL+ACSH G V +G
Sbjct: 407 --NKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQG 464
Query: 208 LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC 267
F +M + +V P I+HY C+IDMLGRAG+L++A ++A +P E N VVWR LL AC
Sbjct: 465 RNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIE-ANPVVWRALLAAC 523
Query: 268 SFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPG 327
H + + E +++ E+E + G YVLM N+ V RY + +R + ++N K PG
Sbjct: 524 RLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPG 583
Query: 328 RSLV 331
S +
Sbjct: 584 CSWI 587
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 134/263 (50%), Gaps = 11/263 (4%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E ++ + ++ +K+G +E+A+ FEE+P R+VV W +++GY ++ + L FRR
Sbjct: 168 ELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRR 227
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M E PS T+ GD+ N ++IHG+ K G+++ + VSN LID Y KC
Sbjct: 228 M-NDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDS-GVAVSNSLIDMYGKC 285
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
CI AL++FE + K++ SW SI+S G + +RM ++P+ VT +
Sbjct: 286 KCIEDALEIFE--MMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTT 343
Query: 194 VLNACSHGGLVEEGLKFFDKMV-----EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
VL ACSH + G + M+ ++ + + D+ +IDM + G + A V
Sbjct: 344 VLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFE 403
Query: 249 GIPSEITNVVVWRTLLGACSFHG 271
+ ++ +V W ++ HG
Sbjct: 404 RMSNK--DVASWNIMIMGYGMHG 424
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Query: 3 KDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
KDG + D L + N +I K G + A +FE M ++V SW +I GY
Sbjct: 371 KDGKDIDDVLLK------NAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHG 424
Query: 63 RSNGALALFRRMVACEYT-EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
N AL +F RM CE +P E+T + V A G V + + + A I
Sbjct: 425 YGNEALEMFSRM--CEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIE 482
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 166
C+ID + G + A +L + +E N V W ++++ +H
Sbjct: 483 HYTCVIDMLGRAGQLDEAYELALTMPIE-ANPVVWRALLAACRLH 526
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 22/154 (14%)
Query: 138 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197
+ LK E+ N+ ++ +IISGF +G +E E +++M+ + P++ TF + A
Sbjct: 89 NTLKAGENDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKA 148
Query: 198 C--------SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
C HG L + GL+ D+ L++ + G +E A+
Sbjct: 149 CLDVLEIKKIHGLLFKFGLEL------------DVFIGSALVNCYLKFGLMEHAQVAFEE 196
Query: 250 IPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
+P I +VV+W ++ + G EM R++
Sbjct: 197 LP--IRDVVLWNAMVNGYAQIGQFEMVLETFRRM 228
>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 119/335 (35%), Positives = 191/335 (57%), Gaps = 18/335 (5%)
Query: 2 LKDGSKLFDEL-PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L+ +FDEL +RN VTWN+MI+ + G+L AR LF+ MP R+VVSW +I GY +
Sbjct: 309 LEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQ 368
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNC----QLIHGYGEKRGFN 116
S ++ LF+ M++C +P E+TI +V A G ++ ++ K G +
Sbjct: 369 NGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGIS 428
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
F N LI Y+KCG + A ++F+ + +++VS+ ++ISGFA +G GKEA++
Sbjct: 429 GF-----NSLIFMYSKCGSVADAHRIFQTMGT--RDVVSFNTLISGFAANGHGKEAIKLV 481
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
M++ ++P+ VT++ VL ACSH GL+ EG F + P + HY C++D+LGR
Sbjct: 482 LTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQA-----PTVDHYACMVDLLGR 536
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
AG L++A+ + +P + + V+ +LL A H V +GE K+ E+E G+YVL
Sbjct: 537 AGELDEAKMLIQSMPMK-PHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVL 595
Query: 297 MYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ NI A R+ D +R+R ++ + K G S V
Sbjct: 596 LSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWV 630
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 156/335 (46%), Gaps = 44/335 (13%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LF+ +P RN++TW M+TG K G+LE AR F+EMP R+VVSW + Y + A
Sbjct: 183 LFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEA 242
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG--FNAFHIHVSNC 125
L LF +M+ E P + T + + GD I +++ N+F V
Sbjct: 243 LNLFHQMLE-EGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSF---VKTA 298
Query: 126 LIDTYAKCGCIFSALKLFEDISVER------------------------------KNLVS 155
L+D +AK G + A +F+++ +R +++VS
Sbjct: 299 LLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVS 358
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFLSVLNACSHGGLVEEGLKFFDKM 214
W S+I+G+A +G ++E F+ M + ++P+ VT SVL+AC H G ++ D +
Sbjct: 359 WNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLD-I 417
Query: 215 VEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
V E + I + LI M + G + A ++ + + +VV + TL+ + +G+
Sbjct: 418 VREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTR--DVVSFNTLISGFAANGH-- 473
Query: 275 MGERVTRKILEM-ERGYGGDYVLMYNILAGVWRYG 308
G+ + +L M E G D+V +L G
Sbjct: 474 -GKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAG 507
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 124/296 (41%), Gaps = 28/296 (9%)
Query: 35 YARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT---EPSEITILAVF 91
Y S+F P + ++ ++ Y+RM N ++LF+ C ++ P + +
Sbjct: 52 YVDSIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFK----CTHSLNLRPQPFVYIYLI 107
Query: 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151
++G+ L H Y K G H + N ++D YAK G + A LFE ++ +
Sbjct: 108 KLAGKSGN-----LFHAYVLKLGHIDDHF-IRNAILDMYAKNGQVDLARNLFEQMA--ER 159
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
L W S+ISG G EAV F M N +T+ S++ + G +E ++F
Sbjct: 160 TLADWNSMISGCWKSGNETEAVVLFNMMP----ARNIITWTSMVTGYAKMGDLESARRYF 215
Query: 212 DKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
D+M E V + + + + GI + T W + +CS G
Sbjct: 216 DEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDT---TWVVTISSCSSIG 272
Query: 272 NVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE----RNAL 323
+ + + + R I ++ + + +L ++G+ E R + DE RNA+
Sbjct: 273 DPTLADSILRMI--DQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAV 326
>gi|356545987|ref|XP_003541414.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 613
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 180/316 (56%), Gaps = 3/316 (0%)
Query: 17 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVA 76
+ W +++ GE+E AR LF++M R+VVSWT +I GY AL LF +
Sbjct: 250 VAAWTSLVSAYALRGEVEVARRLFDQMGERDVVSWTAMISGYCHAGCFQEALELFVELED 309
Query: 77 CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC-LIDTYAKCGC 135
EP E+ ++A A + G + + IH ++ + H C ++D YAKCG
Sbjct: 310 LG-MEPDEVVVVAALSACARLGALELGRRIHHKYDRDSWQCGHNRGFTCAVVDMYAKCGS 368
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
I +AL +F S + K + SI+SG A HG G+ A+ FE M+ V L+P+ VT++++L
Sbjct: 369 IEAALDVFLKTSDDMKTTFLYNSIMSGLAHHGRGEHAMALFEEMRLVGLEPDEVTYVALL 428
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
AC H GLV+ G + F+ M+ E V P ++HYGC++D+LGRAG L +A + +P +
Sbjct: 429 CACGHSGLVDHGKRLFESMLSEYGVNPQMEHYGCMVDLLGRAGHLNEAYLLIQNMPFK-A 487
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
N V+WR LL AC G+VE+ ++++L ME +G YV++ N+L + ++ +A +RR
Sbjct: 488 NAVIWRALLSACKVDGDVELARLASQELLAMENDHGARYVMLSNMLTLMDKHDEAASVRR 547
Query: 316 VVDERNALKFPGRSLV 331
+D K PG S V
Sbjct: 548 AIDNVGIQKPPGWSHV 563
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 141/308 (45%), Gaps = 39/308 (12%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ + +F E N+ N ++ +G+ A +F+E P R+ VS+ +I+G R
Sbjct: 100 LQVHTHVFKSGFESNVFVVNALLQVYFVFGDARNACRVFDESPVRDSVSYNTVINGLVRA 159
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR----GFNA 117
R+ ++ +F M + EP E T +A+ A D +++HG ++ G N
Sbjct: 160 GRAGCSMRIFAEMRG-GFVEPDEYTFVALLSACSLLEDRGIGRVVHGLVYRKLGCFGENE 218
Query: 118 FHIHVSNCLIDTYAKCGC----------------------IFSALKLFEDISVER----- 150
+ N L+D YAKCGC + SA L ++ V R
Sbjct: 219 LLV---NALVDMYAKCGCLEVAERVVRNGNGKSGVAAWTSLVSAYALRGEVEVARRLFDQ 275
Query: 151 ---KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEG 207
+++VSWT++ISG+ G +EA+E F ++ + ++P+ V ++ L+AC+ G +E G
Sbjct: 276 MGERDVVSWTAMISGYCHAGCFQEALELFVELEDLGMEPDEVVVVAALSACARLGALELG 335
Query: 208 LKFFDKMVEECEVLPDIKHYGC-LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
+ K + + + C ++DM + G +E A V ++ ++ +++
Sbjct: 336 RRIHHKYDRDSWQCGHNRGFTCAVVDMYAKCGSIEAALDVFLKTSDDMKTTFLYNSIMSG 395
Query: 267 CSFHGNVE 274
+ HG E
Sbjct: 396 LAHHGRGE 403
>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
Length = 583
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 190/316 (60%), Gaps = 6/316 (1%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E ++ + ++ K ++ AR +F+ +P R+VVS T II GY + AL LFR+
Sbjct: 143 ESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQ 202
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
+ + E + + +T + A+ + + +H ++ F + + N LID Y+KC
Sbjct: 203 LYS-EGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKEL-PFFVALQNSLIDMYSKC 260
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + + ++F+++ +ER ++VSW +++ G+ HG+G E + F+ + K V KP+ VT L+
Sbjct: 261 GKLLYSRRVFDNM-LER-SVVSWNAMLMGYGRHGLGHEVISLFKDLHKEV-KPDSVTLLA 317
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VL+ CSHGGLV+EGL FD +V+E L HYGC+ID+LGR+GRLE+A + +P E
Sbjct: 318 VLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFE 377
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
T +W +LLGAC H NV +GE V +K+LEME G+YV++ NI A + D ++
Sbjct: 378 STP-SIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKV 436
Query: 314 RRVVDERNALKFPGRS 329
R+++ E+ K PG+S
Sbjct: 437 RKLMLEKTVTKEPGQS 452
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 154/310 (49%), Gaps = 14/310 (4%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
++T V+ G L+ AR++ + MP R+VVSWT +I GY++ R AL LF +M+ P
Sbjct: 51 LVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCI-P 109
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
+E T+ V + + + +H K F + H+ V + L+D YAK I A ++
Sbjct: 110 NEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFES-HMFVGSSLLDMYAKSENIQEARRV 168
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202
F+ ++ +++VS T+IISG+A G+ +EA++ F ++ ++ N VTF +++ A S
Sbjct: 169 FD--TLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLA 226
Query: 203 LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
++ G K ++ E+ + LIDM + G+L + +V + +VV W
Sbjct: 227 SLDYG-KQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLER--SVVSWNA 283
Query: 263 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER----LRRVVD 318
+L HG +G V ++ + D V + +L+G G + VV
Sbjct: 284 MLMGYGRHG---LGHEVISLFKDLHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVK 340
Query: 319 ERNALKFPGR 328
E++AL G
Sbjct: 341 EQSALLHTGH 350
>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
Length = 709
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 119/314 (37%), Positives = 177/314 (56%), Gaps = 9/314 (2%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I K +E A +FE M +++ SW I+ + + +G L L RM+
Sbjct: 276 NSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAG-I 334
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYG-----EKRGFNAFHIHVSNCLIDTYAKCGC 135
+P +T+ V PA + + + IHGY K G + + + N +ID YAKCG
Sbjct: 335 QPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGS 394
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ A +FE +S K++ SW +I G+ MHG G EA+E F RM +V LKP+ VTF+ VL
Sbjct: 395 MRDAHLVFERMS--NKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVL 452
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+ACSH G V +G F +M + +V P I+HY C+IDMLGRAG+L++A ++A +P E
Sbjct: 453 SACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIE-A 511
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
N VVWR LL AC H + + E +++ E+E + G YVLM N+ V RY + +R
Sbjct: 512 NPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRH 571
Query: 316 VVDERNALKFPGRS 329
+ ++N K PG S
Sbjct: 572 TMRQQNVRKTPGCS 585
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 135/263 (51%), Gaps = 11/263 (4%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E ++ + ++ +K+G +E+A+ FEE+P R+VV W +++GY ++ + L FRR
Sbjct: 168 ELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRR 227
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M E PS T+ V GD+ N ++IHG+ K G+++ + VSN LID Y KC
Sbjct: 228 MND-ESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDS-GVAVSNSLIDMYGKC 285
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
CI AL++FE + K++ SW SI+S G + +RM ++P+ VT +
Sbjct: 286 KCIEDALEIFE--MMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTT 343
Query: 194 VLNACSHGGLVEEGLKFFDKMV-----EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
VL ACSH + G + M+ ++ + + D+ +IDM + G + A V
Sbjct: 344 VLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFE 403
Query: 249 GIPSEITNVVVWRTLLGACSFHG 271
+ ++ +V W ++ HG
Sbjct: 404 RMSNK--DVASWNIMIMGYGMHG 424
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 100/215 (46%), Gaps = 25/215 (11%)
Query: 78 EYTEPSEITI-LAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136
+ +P +T +A A + ++ + IH Y GF + +++ LI+ Y+KC +
Sbjct: 30 SFQQPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITS-LINMYSKCNQM 88
Query: 137 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLN 196
AL +F D + E N+ ++ +IISGF +G +E E +++M+ + P++ TF +
Sbjct: 89 NFALSIFSDPTHE-INVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIK 147
Query: 197 AC--------SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
AC HG L + GL+ D+ L++ + G +E A+
Sbjct: 148 ACLDVLEIKKIHGLLFKFGLEL------------DVFIGSALVNCYLKFGLMEHAQVAFE 195
Query: 249 GIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
+P I +VV+W ++ + G EM R++
Sbjct: 196 ELP--IRDVVLWNAMVNGYAQIGQFEMVLETFRRM 228
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Query: 3 KDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
KDG + D L + N +I K G + A +FE M ++V SW +I GY
Sbjct: 371 KDGKDIDDVLLK------NAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHG 424
Query: 63 RSNGALALFRRMVACEYT-EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
N AL +F RM CE +P E+T + V A G V + + + A I
Sbjct: 425 YGNEALEMFSRM--CEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIE 482
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 166
C+ID + G + A +L + +E N V W ++++ +H
Sbjct: 483 HYTCVIDMLGRAGQLDEAYELALTMPIE-ANPVVWRALLAACRLH 526
>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 615
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 116/316 (36%), Positives = 190/316 (60%), Gaps = 6/316 (1%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E ++ + ++ K ++ AR +F+ +P R+VVS T II GY + AL LFR+
Sbjct: 175 ESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQ 234
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
+ + E + + +T + A+ + + +H ++ F + + N LID Y+KC
Sbjct: 235 LYS-EGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKEL-PFFVALQNSLIDMYSKC 292
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + + ++F+++ +ER ++VSW +++ G+ HG+G E + F+ + K V KP+ VT L+
Sbjct: 293 GKLLYSRRVFDNM-LER-SVVSWNAMLMGYGRHGLGHEVISLFKDLHKEV-KPDSVTLLA 349
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VL+ CSHGGLV+EGL FD +V+E L HYGC+ID+LGR+GRLE+A + +P E
Sbjct: 350 VLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFE 409
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
T +W +LLGAC H NV +GE V +K+LEME G+YV++ NI A + D ++
Sbjct: 410 STP-SIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKV 468
Query: 314 RRVVDERNALKFPGRS 329
R+++ E+ K PG+S
Sbjct: 469 RKLMLEKTVTKEPGQS 484
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 154/309 (49%), Gaps = 14/309 (4%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
++T V+ G L+ AR++ + MP R+VVSWT +I GY++ R AL LF +M+ P
Sbjct: 83 LVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCI-P 141
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
+E T+ V + + + +H K F + H+ V + L+D YAK I A ++
Sbjct: 142 NEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFES-HMFVGSSLLDMYAKSENIQEARRV 200
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202
F+ ++ +++VS T+IISG+A G+ +EA++ F ++ ++ N VTF +++ A S
Sbjct: 201 FD--TLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLA 258
Query: 203 LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
++ G K ++ E+ + LIDM + G+L + +V + +VV W
Sbjct: 259 SLDYG-KQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLER--SVVSWNA 315
Query: 263 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER----LRRVVD 318
+L HG +G V ++ + D V + +L+G G + VV
Sbjct: 316 MLMGYGRHG---LGHEVISLFKDLHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVK 372
Query: 319 ERNALKFPG 327
E++AL G
Sbjct: 373 EQSALLHTG 381
>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 122/360 (33%), Positives = 195/360 (54%), Gaps = 33/360 (9%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ KLFDE+P+R++V+WN M+ G K GE++ A LFE MP RN+VSW+ ++ GY++
Sbjct: 204 LQGACKLFDEMPDRDMVSWNTMLDGYAKAGEMDTAFELFERMPWRNIVSWSTMVCGYSKG 263
Query: 62 NRSNGALALFRRM-------------------VACEYTE-----------PSEITILAVF 91
+ A LF R +A E TE P + +L++
Sbjct: 264 GDMDMARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSIL 323
Query: 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151
A ++G + + IH + F V N ID YAKCGC+ +A +F + + +K
Sbjct: 324 AACAESGMLGLGKRIHASMRRWRFRC-GAKVLNAFIDMYAKCGCLDAAFDVFSGM-MAKK 381
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211
++VSW S+I GFAMHG G++A+E F M + +P+ TF+ +L AC+H GLV EG K+F
Sbjct: 382 DVVSWNSMIQGFAMHGHGEKALELFSWMVQEGFEPDTYTFVGLLCACTHAGLVNEGRKYF 441
Query: 212 DKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
M + ++P ++HYGC++D+LGR G L++A + +P E N ++ TLL AC H
Sbjct: 442 YSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFMLLRSMPME-PNAIILGTLLNACRMHN 500
Query: 272 NVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+V++ V ++ ++E G+Y L+ NI A + + +R + K G S +
Sbjct: 501 DVDLARAVCEQLFKLEPSDPGNYSLLSNIYAQAGDWMNVANVRLQMKNTGGEKPSGASSI 560
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 128/284 (45%), Gaps = 28/284 (9%)
Query: 32 ELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGAL---ALFRRMVACEYTEPSEITIL 88
L A ++F +P NV + II + N S+ +L A F+ + P T
Sbjct: 68 HLASAVNVFNHVPHPNVHLYNSIIRAHAH-NSSHRSLPFNAFFQMQKNGLF--PDNFTYP 124
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG--CIFSALKLFEDI 146
+ A + ++IH + EK GF I V N LID+Y++CG + A+ LF +
Sbjct: 125 FLLKACSGPSSLPLVRMIHAHVEKIGFYG-DIFVPNSLIDSYSRCGNAGLDGAMSLF--L 181
Query: 147 SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR--VTFLSVLNACSHGGLV 204
++E +++V+W S+I G G + A + F+ M P+R V++ ++L+ + G +
Sbjct: 182 AMEERDVVTWNSMIGGLVRCGELQGACKLFDEM------PDRDMVSWNTMLDGYAKAGEM 235
Query: 205 EEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
+ + F++M +I + ++ + G ++ A + P + NVV+W T++
Sbjct: 236 DTAFELFERMPWR-----NIVSWSTMVCGYSKGGDMDMARMLFDRCP--VKNVVLWTTII 288
Query: 265 GACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
+ G + K+ E G D + +ILA G
Sbjct: 289 AGYAEKGLAREATELYGKM--EEAGMRPDDGFLLSILAACAESG 330
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 109/303 (35%), Positives = 180/303 (59%), Gaps = 5/303 (1%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
K GE+ AR++F+ M ++V++WT +I Y + N + A LF +M P+E+T++
Sbjct: 279 KCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRD-NGVRPNELTMV 337
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
++ NG + + H Y +K+G + + LID YAKCG I A +LF + ++
Sbjct: 338 SLLSLCAVNGALDMGKWFHAYIDKQGVEV-DVILKTALIDMYAKCGDISGAQRLFSE-AI 395
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
+R ++ +W +++G+ MHG G++A++ F M+ + +KPN +TF+ L+ACSH GLV EG
Sbjct: 396 DR-DICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGK 454
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
F+KM+ + ++P ++HYGC++D+LGRAG L++A K+ +P N+ +W +L AC
Sbjct: 455 GLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPV-TPNIAIWGAMLAACK 513
Query: 269 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGR 328
H N MGE R++L +E G VLM NI A R+ D +R+ V + K PG
Sbjct: 514 IHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGM 573
Query: 329 SLV 331
S +
Sbjct: 574 SSI 576
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 148/280 (52%), Gaps = 19/280 (6%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFD++ ER++V+W+ MI + +LF R++VSWT +I GY R N
Sbjct: 166 LFDKMSERDVVSWSTMIRAYI---------TLFYGFSQRSIVSWTAMIAGYIRCNDLEEG 216
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
LF RM+ E P++IT+L++ + G V+ + +H Y + GF + ++ L+
Sbjct: 217 ERLFVRMIE-ENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGF-GMSLALATALV 274
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y KCG I SA +F+ S++ K++++WT++IS +A A + F +M+ ++PN
Sbjct: 275 DMYGKCGEIRSARAIFD--SMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPN 332
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+T +S+L+ C+ G ++ G K+F +++ V D+ LIDM + G + A+++
Sbjct: 333 ELTMVSLLSLCAVNGALDMG-KWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLF 391
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME 287
S ++ W ++ HG GE+ + EME
Sbjct: 392 SEAIDR--DICTWNVMMAGYGMHG---YGEKALKLFTEME 426
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 93/206 (45%), Gaps = 24/206 (11%)
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
E I +V A Q R + IHG+ K G + + V N L+ Y++CG + SA
Sbjct: 106 EVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVS-DVFVVNALMQMYSECGSLVSAR 164
Query: 141 KLFEDIS--------------------VERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
LF+ +S ++++VSWT++I+G+ +E F RM
Sbjct: 165 LLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMI 224
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ + PN +T LS++ +C G V+ G + ++ + + L+DM G+ G +
Sbjct: 225 EENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGM-SLALATALVDMYGKCGEI 283
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGA 266
A + + ++ +V+ W ++ A
Sbjct: 284 RSARAIFDSMKNK--DVMTWTAMISA 307
>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 114/334 (34%), Positives = 188/334 (56%), Gaps = 17/334 (5%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + K+F +P RN++TWN +++G V G +E A+S FEEMP +N+++ T +I G +
Sbjct: 344 VDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQN 403
Query: 62 NRSNGALALFRRM-----VACEYTEPSEITILAVFPAIWQNGDVRNCQLIH-GYGEKRGF 115
+ L LF++M C++ +T +V A+ +NG + QL+H GY
Sbjct: 404 GFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGAL-ENGRQLHAQLVHLGYESS--- 459
Query: 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
+ V N +I YAKCG + +A +F +++ +LVSW S+I+ HG G +A+E
Sbjct: 460 ----LSVGNAMISMYAKCGVVEAAESVF--VTMPSVDLVSWNSMIAALGQHGHGVKAIEL 513
Query: 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
F++M K + P+R+TFL+VL ACSH GLVE+G +F+ M+E + P HY ++D+
Sbjct: 514 FDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFC 573
Query: 236 RAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV 295
RAG A V +PS+ VW LL C HGN+++G ++ ++ G YV
Sbjct: 574 RAGMFSYARIVIDSMPSK-PGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYV 632
Query: 296 LMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
L+ NI A V R+ + ++R+++ ++ K P S
Sbjct: 633 LLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACS 666
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 88/305 (28%), Positives = 137/305 (44%), Gaps = 50/305 (16%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
KLFDE+P+R+ +TW MITG V+ +L AR +FE M +W +I GY
Sbjct: 213 KLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQE 272
Query: 67 ALALFRRM--VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH---IH 121
AL L R+M + ++ +IT + A G + + +H Y K N H +
Sbjct: 273 ALTLCRKMRFLGIQF---DDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLS 329
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VSN LI Y K + A K+F + V +N+++W +I+SG+ G +EA FE M
Sbjct: 330 VSNALITLYCKNNKVDEARKIFYAMPV--RNIITWNAILSGYVNAGRMEEAKSFFEEMP- 386
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKM---------------VEECEVL----- 221
N +T +++ + G +EGLK F +M + C VL
Sbjct: 387 ---VKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALEN 443
Query: 222 -----PDIKHYG---------CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC 267
+ H G +I M + G +E AE V +PS ++V W +++ A
Sbjct: 444 GRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPS--VDLVSWNSMIAAL 501
Query: 268 SFHGN 272
HG+
Sbjct: 502 GQHGH 506
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 137/314 (43%), Gaps = 52/314 (16%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYTRMNRS 64
+LF+E+P + + +IT G LE R +F P R+ V + +I GY
Sbjct: 69 QLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDG 128
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPA-IWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
+ AL LFR M ++ P + T +V A + G+ + C +H K G V
Sbjct: 129 HSALELFRAMRRDDF-RPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVL 187
Query: 124 NCLIDTYAK--------CGCIFSALKLFEDIS--------------VERKNL-------- 153
N L+ Y K C + SA KLF+++ V +L
Sbjct: 188 NALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFE 247
Query: 154 -------VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEE 206
+W ++ISG+ G +EA+ +M+ + ++ + +T+ ++++AC++ G +
Sbjct: 248 AMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQM 307
Query: 207 GLKFFDKMVEECEVLPDIKHYGC------LIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
G + +++ E+ P+ H C LI + + ++++A K+ +P + N++ W
Sbjct: 308 GKQVHAYILKN-ELNPN--HSFCLSVSNALITLYCKNNKVDEARKIFYAMP--VRNIITW 362
Query: 261 RTLLGACSFHGNVE 274
+L G +E
Sbjct: 363 NAILSGYVNAGRME 376
>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 730
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 186/307 (60%), Gaps = 4/307 (1%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +IT + L +A +LF+ +N+++W ++ GYT M+RS A LFR M+
Sbjct: 369 NALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMDRSEEASFLFREMLLSG-I 427
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
EP+ +TI ++ P + ++++ + H Y +R ++ + N L+D YA+ G + A
Sbjct: 428 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMYARSGKVLEAK 487
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
+LF+ IS R++ V++TS+I+G+ + G G+EA++ F+ M+K +KP+ VT ++VL+ACSH
Sbjct: 488 RLFDSIS--RRDEVTYTSLIAGYGIQGEGREALKLFDEMKKRHIKPDHVTMVAVLSACSH 545
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
GLV EG+K F+ M ++P ++H+ C++D+ GRAG L +A+++ + +P ++ +W
Sbjct: 546 SGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLLHKAKEMITRMPYRPSS-AMW 604
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320
TLLGAC HGN E+GE K+LEM G YVL+ N+ A + ++R + +
Sbjct: 605 ATLLGACRIHGNAEIGEWAAEKLLEMRPENSGYYVLIANMYAAAGCWSKLAKVRTYMRDL 664
Query: 321 NALKFPG 327
K PG
Sbjct: 665 GVRKAPG 671
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 139/306 (45%), Gaps = 14/306 (4%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR----NVVSWTGIIDGYTRMNR 63
LF+ + ER+ V+WN MI+G G + A LF +M N+++W I G +
Sbjct: 251 LFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMRVEGIELNIITWNTIAGGCVQSGN 310
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
AL L M + S TI+ + A G ++ + IHG + ++ +V
Sbjct: 311 FEEALELLSHMRSYGIDMDSVATIIGL-GACSHIGAIKLGREIHGSAIRSFYDGVD-NVK 368
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N LI Y++C + A LF+ S KN+++W S++SG+ +EA F M
Sbjct: 369 NALITMYSRCKYLRHAYNLFQ--STRTKNIITWNSMLSGYTHMDRSEEASFLFREMLLSG 426
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
++PN VT S+L C+ ++ G +F ++ + + L+DM R+G++ +A
Sbjct: 427 IEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMYARSGKVLEA 486
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM-ERGYGGDYVLMYNILA 302
+++ I + V + +L+ G G + EM +R D+V M +L+
Sbjct: 487 KRLFDSISRR--DEVTYTSLIAGYGIQGE---GREALKLFDEMKKRHIKPDHVTMVAVLS 541
Query: 303 GVWRYG 308
G
Sbjct: 542 ACSHSG 547
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 123/268 (45%), Gaps = 42/268 (15%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E++ + ++T + L A ++ E + + W +I Y R AL+ +++
Sbjct: 125 EQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLLISSYVRNGLHGEALSAYKQ 184
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR--GFNAFHIHVSNCLIDTYA 131
M + P + T +V A + D+ + +H G+N F V N L+ YA
Sbjct: 185 MTH-KGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLGWNLF---VHNSLVSMYA 240
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191
K G + +A LFE++ +ER + VSW ++ISG+A GM KEA E F +M+ ++ N +T+
Sbjct: 241 KTGELSTARCLFENM-LERDD-VSWNTMISGYASKGMWKEAFELFGKMRVEGIELNIITW 298
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
++ C G EE L E+L ++ YG IDM + VA+ I
Sbjct: 299 NTIAGGCVQSGNFEEAL----------ELLSHMRSYG--IDM----------DSVATIIG 336
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERV 279
LGACS G +++G +
Sbjct: 337 ------------LGACSHIGAIKLGREI 352
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 7/168 (4%)
Query: 17 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVA 76
L+ WN ++ + G++ A+ LF+ + R+ V++T +I GY AL LF M
Sbjct: 467 LLLWNSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKK 526
Query: 77 CEYTEPSEITILAVFPAIWQNGDV-RNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
+ +P +T++AV A +G V +L G H + C++D + + G
Sbjct: 527 -RHIKPDHVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFA-CMVDLFGRAGL 584
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKEAVENFERMQ 180
+ A ++ + R + W +++ +HG +G+ A E M+
Sbjct: 585 LHKAKEMITRMPY-RPSSAMWATLLGACRIHGNAEIGEWAAEKLLEMR 631
>gi|357153075|ref|XP_003576330.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g18840-like [Brachypodium distachyon]
Length = 535
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 115/329 (34%), Positives = 192/329 (58%), Gaps = 8/329 (2%)
Query: 3 KDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
+ ++ E+PER++ WN IT + G++E A +F EMP R+ VSW +I Y ++
Sbjct: 208 RGAERVSQEMPERSVSWWNAEITRHARVGDMEAAARVFREMPGRDAVSWNSLIGSYAKLG 267
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV 122
+ AL +FR M EP+E+T+++V A + G++ + +HGY +G A +V
Sbjct: 268 QCARALKVFREMQD-SGVEPTELTLVSVLGACTEIGELELGKGVHGYLSSKGVLA-DGYV 325
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
N L+D YAKCG + A ++FE +S +++ W ++I G ++HG +EA+E F M+
Sbjct: 326 GNALVDMYAKCGSLELARQVFESMST--RDITCWNAMIVGLSVHGYSREALELFNVMR-- 381
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
++P+ VTFL VL CSH GLV+EG F M E+ +++P +KHYGC++DML R G++ +
Sbjct: 382 -VEPDHVTFLGVLIVCSHSGLVDEGRVXFRSMTEDYKIVPGVKHYGCMVDMLCRCGKVAE 440
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302
A ++ + +P + N V+W+ +L AC HG++ + ++ ++ GD ++M +I A
Sbjct: 441 AYQMLNYMPLK-ANSVLWKMVLAACRLHGHIHHANKAFHELHQLMPIDDGDVIMMSSIYA 499
Query: 303 GVWRYGDAERLRRVVDERNALKFPGRSLV 331
R+ D E LR V E + K S V
Sbjct: 500 EGKRWDDVEHLRTKVIEPSFWKHGAHSQV 528
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 106/251 (42%), Gaps = 46/251 (18%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +++ K G L AR +F+ MP RN VSW ++ + + S GA V+ E
Sbjct: 164 NALVSMYGKLGRLGDARKVFDGMPARNAVSWNALVAAHGDVGDSRGA-----ERVSQEMP 218
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
E S W N + I +A+ G + +A
Sbjct: 219 ERS---------VSWWNAE---------------------------ITRHARVGDMEAAA 242
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
++F ++ ++ VSW S+I +A G A++ F MQ ++P +T +SVL AC+
Sbjct: 243 RVFREM--PGRDAVSWNSLIGSYAKLGQCARALKVFREMQDSGVEPTELTLVSVLGACTE 300
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
G +E G K + VL D L+DM + G LE A +V + + ++ W
Sbjct: 301 IGELELG-KGVHGYLSSKGVLADGYVGNALVDMYAKCGSLELARQVFESMSTR--DITCW 357
Query: 261 RTLLGACSFHG 271
++ S HG
Sbjct: 358 NAMIVGLSVHG 368
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 28/189 (14%)
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHG------------GL 203
++ I+ A ++ F R+ ++ L F ++L +C+ G
Sbjct: 81 YSPAIAALASSPYPAASLAVFNRVSRLSLPIPLPAFPALLKSCARAFNLCAAADGGGEGF 140
Query: 204 VEEGLKFFDKMVE-ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
V +G++ +++ C D L+ M G+ GRL A KV G+P+ N V W
Sbjct: 141 VSKGMELHGCVLKLGCGA--DRYVQNALVSMYGKLGRLGDARKVFDGMPAR--NAVSWNA 196
Query: 263 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNA 322
L+ A G+ ERV++++ E + + + R GD E RV E
Sbjct: 197 LVAAHGDVGDSRGAERVSQEMPERSVSWWNAEITRHA------RVGDMEAAARVFRE--- 247
Query: 323 LKFPGRSLV 331
PGR V
Sbjct: 248 --MPGRDAV 254
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 109/264 (41%), Gaps = 44/264 (16%)
Query: 39 LFEEMPCR-NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQN 97
L PC + ++ I +LA+F R+ P L FPA+ ++
Sbjct: 68 LLSAAPCSLSPPLYSPAIAALASSPYPAASLAVFNRVSRLSLPIP-----LPAFPALLKS 122
Query: 98 ----------------GDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
G V +HG K G A +V N L+ Y K G + A K
Sbjct: 123 CARAFNLCAAADGGGEGFVSKGMELHGCVLKLGCGADR-YVQNALVSMYGKLGRLGDARK 181
Query: 142 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHG 201
+F+ + +N VSW ++++ G + A ER+ + + + + + + + +
Sbjct: 182 VFDGMPA--RNAVSWNALVAAHGDVGDSRGA----ERVSQEMPERSVSWWNAEITRHARV 235
Query: 202 GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV-----ASGI-PSEIT 255
G +E + F +M D + LI + G+ +A KV SG+ P+E+T
Sbjct: 236 GDMEAAARVFREMPGR-----DAVSWNSLIGSYAKLGQCARALKVFREMQDSGVEPTELT 290
Query: 256 NVVVWRTLLGACSFHGNVEMGERV 279
V ++LGAC+ G +E+G+ V
Sbjct: 291 LV----SVLGACTEIGELELGKGV 310
>gi|15221226|ref|NP_177580.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169846|sp|Q9CA73.1|PP119_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g74400
gi|12324820|gb|AAG52382.1|AC011765_34 hypothetical protein; 20273-21661 [Arabidopsis thaliana]
gi|332197466|gb|AEE35587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 462
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 118/307 (38%), Positives = 182/307 (59%), Gaps = 15/307 (4%)
Query: 31 GELEYARSLFEEMPCR-NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILA 89
G+++YAR +F+E P + N+V WT +I YT S A+ LF+RM A E E + +
Sbjct: 114 GDVDYARQVFDETPEKQNIVLWTAMISAYTENENSVEAIELFKRMEA-EKIELDGVIVTV 172
Query: 90 VFPAIWQNGDVRNCQLIHGYGEKRGFN-AFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
A G V+ + I+ KR A + + N L++ Y K G A KLF++
Sbjct: 173 ALSACADLGAVQMGEEIYSRSIKRKRRLAMDLTLRNSLLNMYVKSGETEKARKLFDE--S 230
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERM------QKVVLKPNRVTFLSVLNACSHGG 202
RK++ ++TS+I G+A++G +E++E F++M Q V+ PN VTF+ VL ACSH G
Sbjct: 231 MRKDVTTYTSMIFGYALNGQAQESLELFKKMKTIDQSQDTVITPNDVTFIGVLMACSHSG 290
Query: 203 LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
LVEEG + F M+ + + P H+GC++D+ R+G L+ A + + +P + N V+WRT
Sbjct: 291 LVEEGKRHFKSMIMDYNLKPREAHFGCMVDLFCRSGHLKDAHEFINQMPIK-PNTVIWRT 349
Query: 263 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNA 322
LLGACS HGNVE+GE V R+I E++R + GDYV + NI A + + ++R V +R
Sbjct: 350 LLGACSLHGNVELGEEVQRRIFELDRDHVGDYVALSNIYASKGMWDEKSKMRDRVRKR-- 407
Query: 323 LKFPGRS 329
+ PG+S
Sbjct: 408 -RMPGKS 413
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 102/212 (48%), Gaps = 23/212 (10%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
+L N ++ VK GE E AR LF+E ++V ++T +I GY ++ +L LF++M
Sbjct: 203 DLTLRNSLLNMYVKSGETEKARKLFDESMRKDVTTYTSMIFGYALNGQAQESLELFKKMK 262
Query: 76 ACEYTE-----PSEITILAVFPAIWQNGDVRNCQ-----LIHGYGEKRGFNAFHIHVSNC 125
+ ++ P+++T + V A +G V + +I Y K F C
Sbjct: 263 TIDQSQDTVITPNDVTFIGVLMACSHSGLVEEGKRHFKSMIMDYNLKPREAHF-----GC 317
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
++D + + G + A + + + + N V W +++ ++HG VE E +Q+ + +
Sbjct: 318 MVDLFCRSGHLKDAHEFINQMPI-KPNTVIWRTLLGACSLHG----NVELGEEVQRRIFE 372
Query: 186 PNRV---TFLSVLNACSHGGLVEEGLKFFDKM 214
+R ++++ N + G+ +E K D++
Sbjct: 373 LDRDHVGDYVALSNIYASKGMWDEKSKMRDRV 404
>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 119/334 (35%), Positives = 192/334 (57%), Gaps = 7/334 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDG 57
LKDG L + ++ L + + T L+ K L + S+F + V W ++ G
Sbjct: 339 LKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLGLSFSVFTRTSRKKTVPWNALLSG 398
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
+ A+ LF++M+ E E + T ++ PA D++ I+ Y + GF +
Sbjct: 399 CVHNKLATEAIGLFKKMLM-EGVEINAATCNSLLPAYGILADLQPVNNINSYLMRSGFVS 457
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
+I V+ LID Y+KCG + SA K+F I V+ +++ W+ II+G+ MHG G+ AV F+
Sbjct: 458 -NIQVATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFVWSIIIAGYGMHGHGETAVSLFK 516
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
+M + +KPN VTF SVL +CSH G+V++GL F M+++ + +P+ HY C++D+LGRA
Sbjct: 517 QMVQSGVKPNDVTFTSVLQSCSHAGMVDDGLYLFKFMLKDHQTIPNDDHYTCMVDLLGRA 576
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297
GR+++A + +P + VW LLGAC H NVE+GE R + E+E G G+YVL+
Sbjct: 577 GRMDEAYDLIKTMPF-MPGHAVWGALLGACVMHENVELGEVAARWLFELEPGNTGNYVLL 635
Query: 298 YNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ A + R+ DAE +R+ +D+ K P SL+
Sbjct: 636 AKLYAALGRWEDAENVRQRMDDIGLRKAPAHSLI 669
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 134/252 (53%), Gaps = 8/252 (3%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
+L N ++ + GE+E AR +F+ M ++VVSW +I+GY + +N AL +F +MV
Sbjct: 156 HLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMINGYFKNGFANTALVVFNQMV 215
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
E ++++V PA ++ + +HG E++ VSN L+D YAKCG
Sbjct: 216 DSG-VEIDGASVVSVLPACGYLKELEVGRRVHGLVEEKVLG--KKIVSNALVDMYAKCGS 272
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ A +F+++ VER ++VSWTS+I+G+ ++G K A+ F+ MQ L+PN VT +L
Sbjct: 273 MDEARLVFDNM-VER-DVVSWTSMINGYILNGDAKSALSLFKIMQIEGLRPNSVTIALIL 330
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
AC+ +++G + V + + ++ LIDM + L + V + + T
Sbjct: 331 LACASLNNLKDG-RCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLGLSFSVFTRTSRKKT 389
Query: 256 NVVVWRTLLGAC 267
V W LL C
Sbjct: 390 --VPWNALLSGC 399
Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF-ER 178
I + + L+ TYA CG + +A KLF+++ ++ + + +I + G EA++ F E
Sbjct: 55 IDIRSVLVATYAHCGYVHNARKLFDEL--RQRGTLLYNFMIKMYIAKGDYFEAMKVFLEM 112
Query: 179 MQKVVLKPNRVTFLSVLNACSHGGLVE-----EGLKFFDKMVEECEVLPDIKHYGCLIDM 233
+ P+ T+ V+ ACS LVE GL K VL L+ M
Sbjct: 113 LGSKDCCPDNYTYPFVIKACSELLLVEYGRVLHGLTLVSKFGSHLFVL------NSLLAM 166
Query: 234 LGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
G +E+A KV + + +VV W T++
Sbjct: 167 YMNCGEVEEARKVFDAMKEK--SVVSWNTMI 195
>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 116/326 (35%), Positives = 183/326 (56%), Gaps = 5/326 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FDE+P R++VTW +I + G+++ A LF +P +++V+WT ++ GY++
Sbjct: 165 KVFDEMPHRDVVTWTELIVAYARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKK 224
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF-NAFHIHVSNC 125
AL FR+M EIT++ A Q G I E F + ++ V +
Sbjct: 225 ALQFFRKMREAGVVT-DEITLVGAISACAQLGVSGYADWIREIAESSRFGSGSNVFVGSA 283
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
LID Y+KCG + A +F+ ++ N+ S++S+I GFA+HG + A++ F M + +K
Sbjct: 284 LIDMYSKCGNVEEAYNVFK--GMKEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIK 341
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN VTF+ + ACSH G+VE+G + F M E V P HY C+ D+LGRAG LE+A +
Sbjct: 342 PNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGVSPTADHYACMADLLGRAGHLEKALQ 401
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
+ +P E N VW LLGA HGN ++ E +R + E+E G+Y+L+ A
Sbjct: 402 LVQTMPME-PNGGVWGALLGASHIHGNPDVAEIASRSLFELEPDNLGNYLLLSKTYALAA 460
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
++ D R+R+++ E+ K PG S V
Sbjct: 461 KWDDVSRVRKLMREKQLRKNPGCSWV 486
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/323 (20%), Positives = 140/323 (43%), Gaps = 48/323 (14%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGEL-------EYARSLFEEMPCRNVVSWTGI 54
L +L + NL + +IT L+++ Y LF ++ N ++ +
Sbjct: 24 LNHAKQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLLFSQVHSPNPFLYSAL 83
Query: 55 IDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG 114
I Y R + ++ L+ M+ P T A+F ++ +N + + +H + G
Sbjct: 84 IRAYARNGPFHHSIRLYTSMLN-NNVSPVSFTFSALF-SLLKNPSLGSQLHLHAF--LFG 139
Query: 115 FNAFHIHVSNCLIDTYAKCGCIFSALKLFED----------------------------- 145
F ++V N +I Y K G + A K+F++
Sbjct: 140 F-VNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACELF 198
Query: 146 ISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVE 205
+ + K++V+WTS+++G++ + M K+A++ F +M++ + + +T + ++AC+ G+
Sbjct: 199 VGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGV-- 256
Query: 206 EGLKFFDKMVEECEVL---PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
G + + + E ++ LIDM + G +E+A V G+ NV + +
Sbjct: 257 SGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKE--MNVFSYSS 314
Query: 263 LLGACSFHGNVEMGERVTRKILE 285
++ + HG ++ ++LE
Sbjct: 315 MIVGFAVHGRARSAIKLFYEMLE 337
>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
Length = 485
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 112/316 (35%), Positives = 187/316 (59%), Gaps = 5/316 (1%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ NL N ++ K ++E A+ +F + ++V+SWT ++ G + +LALFR+
Sbjct: 43 DENLSVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRK 102
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M EP EIT++ V A Q G + + IH +K N + + L+D YAKC
Sbjct: 103 M-QLHKIEPDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINC-DLVLETALVDMYAKC 160
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G I AL++F + V +N+ +W ++I G AMHG G++A+ F++M+ L P+ VTF++
Sbjct: 161 GSIDLALQVFRRMRV--RNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIA 218
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L ACSH GLV+EGL F M + ++ P ++HYGC++D+L RA +++ A +P +
Sbjct: 219 LLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIK 278
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
N V+W TLLGAC G+ ++ E++ R+++E+E G YV++ N+ AGV ++ A +L
Sbjct: 279 -ANSVLWATLLGACRSGGHFDLAEKIXRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKL 337
Query: 314 RRVVDERNALKFPGRS 329
R+ + + K PG S
Sbjct: 338 RKQMKNKGIEKTPGCS 353
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 117/201 (58%), Gaps = 6/201 (2%)
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M + P E+T++++ PA Q G++ +L+H Y ++ G + ++ V+N ++D Y KC
Sbjct: 1 MTKLDNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDE-NLSVNNAILDMYCKC 59
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
I SA ++F I K+++SWTS++SG A G +E++ F +MQ ++P+ +T +
Sbjct: 60 DDIESAQEVFNRI--REKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVG 117
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VL+AC+ G +++G K+ ++++ E+ D+ L+DM + G ++ A +V +
Sbjct: 118 VLSACAQTGALDQG-KYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRM--R 174
Query: 254 ITNVVVWRTLLGACSFHGNVE 274
+ NV W ++G + HG+ E
Sbjct: 175 VRNVFTWNAMIGGLAMHGHGE 195
>gi|223948849|gb|ACN28508.1| unknown [Zea mays]
gi|413937254|gb|AFW71805.1| hypothetical protein ZEAMMB73_337002 [Zea mays]
Length = 608
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 113/323 (34%), Positives = 186/323 (57%), Gaps = 8/323 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D LFD++ R+ VTW MI+G + +L A +F+ MP ++ ++WT +I G+ +
Sbjct: 223 VEDARHLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQN 282
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR--GFNAFH 119
+ AL LF +M+A + P+ +++ A + G V + +H + +R G F+
Sbjct: 283 GEEDTALELFEQMLA-KGVSPTPFVLVSALGACAKLGLVTRGKELHCFILRRNIGSVPFN 341
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
I + N L+D Y+KCG + +A+ +F+ + ++ +SW S+++GF+ +G+GK+++ FE M
Sbjct: 342 IFIHNALVDMYSKCGDMMAAMAVFD--WMPERDFISWNSMVTGFSHNGLGKQSLAIFEEM 399
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
++P VTFL+VL ACSH GLV G + M E+ V P +HY ID LGR +
Sbjct: 400 LVAGVRPTHVTFLAVLTACSHSGLVSNGRLVLESM-EDHGVEPRAEHYAAFIDALGRNHQ 458
Query: 240 LEQAEKVASGIPSEITNVVV--WRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297
LE+A + +PS I W LLGAC HGN+E+ E V + +E G G YV+M
Sbjct: 459 LEEATEFIKDLPSRIGPGTAGSWGALLGACRLHGNIELAEEVAEFLFRLEPGNSGRYVMM 518
Query: 298 YNILAGVWRYGDAERLRRVVDER 320
NI A ++ DA R+R ++ E+
Sbjct: 519 SNIYAAAGQWDDARRVRGLMKEK 541
Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 31/146 (21%)
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK-VVLKP----NRVTFLS 193
A +LF+ + + +NLVS+ +++S A HG EA+ R+ + L P +R T +S
Sbjct: 118 AFRLFDTMPADSRNLVSYNTLMSSLAHHGRQVEALRVVARLARDRFLGPGLAMDRFTVVS 177
Query: 194 VLNACS-----------HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
V AC+ HG +V G++F M +++ +A R+E
Sbjct: 178 VATACAGIGAARPLREMHGAVVVSGMEFTVIMAN------------AMLNAYSKARRVED 225
Query: 243 AEKVASGIPSEITNVVVWRTLL-GAC 267
A + + I + V W +++ G C
Sbjct: 226 ARHLFDQV--SIRDNVTWTSMISGYC 249
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 115/331 (34%), Positives = 190/331 (57%), Gaps = 6/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP-CRNVVSWTGIIDGYTR 60
L K+FD++ +++V+W MI +W A LF M N+ W +I+G+
Sbjct: 126 LVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVE 185
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+ AL+LF M + ++T+ ++ A G + + +H Y EK +
Sbjct: 186 DSDYEEALSLFNEM-QLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEV-DV 243
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+ L+D YAKCG I SA+++F+++ K++++WT++I G AM G G +A+E F MQ
Sbjct: 244 ALGTALVDMYAKCGSIESAMRVFQEMP--EKDVMTWTALIVGLAMCGQGLKALELFHEMQ 301
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+KP+ +TF+ VL ACSH GLV EG+ +F+ M + + P I+HYGC++DMLGRAGR+
Sbjct: 302 MSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRI 361
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
+AE + +P + V LL AC HGN+ + ER ++++E++ GG YVL+ NI
Sbjct: 362 AEAEDLIQNMPMA-PDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNI 420
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ + + A+++R ++ ERN K PG S +
Sbjct: 421 YSSMKNWEAAKKMRELMVERNIKKPPGCSAI 451
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 132/276 (47%), Gaps = 44/276 (15%)
Query: 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTE 81
V L G L YAR +F ++P + II GYT N A+ LF +++ + +
Sbjct: 17 VAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAI-LFYQLMMLQGLD 75
Query: 82 PSEITILAVFPAIWQN-GDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P T FP+++++ G + + +H + K GF A ++ N L++ Y+ CGC+ SA
Sbjct: 76 PDRFT----FPSLFKSCGVLCEGKQLHCHSTKLGF-ASDAYIQNTLMNMYSNCGCLVSAR 130
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER---------------------- 178
K+F+ + K++VSW ++I +A + EA++ F R
Sbjct: 131 KVFDKMV--NKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSD 188
Query: 179 ----------MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG 228
MQ +K ++VT S+L AC+H G +E G K+ +E+ ++ D+
Sbjct: 189 YEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELG-KWLHVYIEKEKIEVDVALGT 247
Query: 229 CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
L+DM + G +E A +V +P + +V+ W L+
Sbjct: 248 ALVDMYAKCGSIESAMRVFQEMPEK--DVMTWTALI 281
>gi|449434194|ref|XP_004134881.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 436
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 117/317 (36%), Positives = 185/317 (58%), Gaps = 10/317 (3%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FDE+P +N VTWN MI+G K G++ AR LF+ MP R++ SW+ +I Y GA
Sbjct: 112 VFDEMPHKNSVTWNTMISGYSKAGDVHTARQLFDRMPSRDLASWSAMIAAYINNRNYRGA 171
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGD--VRNCQLIHGYGEKRGFNAFHIHVSNC 125
L LF+ M+ P ++ ++ G + + +HG+ K + ++ +
Sbjct: 172 LLLFQDMI-INGINPDQMAAGSILNGCAHMGSLGLLAGKSVHGFVVKNRWE-LNLELGTV 229
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
L+D YAKCG + A ++F +S +N+ +WT++I G A HG KEA+ FE M+ ++
Sbjct: 230 LVDMYAKCGFLKYACQIFNLMS--ERNVRTWTALICGLAHHGCCKEALVLFETMRHEGVE 287
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN TF VL+AC H GLV+EG K+F+ M+EEC + I+HYGC +D+LGR+G LE+A
Sbjct: 288 PNEFTFTGVLSACVHAGLVQEGRKYFN-MIEECGLEIRIQHYGCFVDLLGRSGLLEEAYG 346
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM--ERGYGGDYVLMYNILAG 303
V + E NV+VW +LL AC H + ++ ERV +ILE + G Y L+ ++
Sbjct: 347 VIKSMRLE-PNVIVWSSLLSACKQHKSFDLAERVIEQILEKIEPDNHAGVYSLVSDLYVL 405
Query: 304 VWRYGDAERLRRVVDER 320
++ DAE +R ++++
Sbjct: 406 QDKWDDAENIRNLLNQH 422
>gi|293336045|ref|NP_001168520.1| uncharacterized protein LOC100382300 [Zea mays]
gi|195615774|gb|ACG29717.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
gi|223946951|gb|ACN27559.1| unknown [Zea mays]
Length = 616
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 113/323 (34%), Positives = 186/323 (57%), Gaps = 8/323 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D LFD++ R+ VTW MI+G + +L A +F+ MP ++ ++WT +I G+ +
Sbjct: 231 VEDARHLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQN 290
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR--GFNAFH 119
+ AL LF +M+A + P+ +++ A + G V + +H + +R G F+
Sbjct: 291 GEEDTALELFEQMLA-KGVSPTPFVLVSALGACAKLGLVTRGKELHCFILRRNIGSVPFN 349
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
I + N L+D Y+KCG + +A+ +F+ + ++ +SW S+++GF+ +G+GK+++ FE M
Sbjct: 350 IFIHNALVDMYSKCGDMMAAMAVFD--WMPERDFISWNSMVTGFSHNGLGKQSLAIFEEM 407
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
++P VTFL+VL ACSH GLV G + M E+ V P +HY ID LGR +
Sbjct: 408 LVAGVRPTHVTFLAVLTACSHSGLVSNGRLVLESM-EDHGVEPRAEHYAAFIDALGRNHQ 466
Query: 240 LEQAEKVASGIPSEITNVVV--WRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297
LE+A + +PS I W LLGAC HGN+E+ E V + +E G G YV+M
Sbjct: 467 LEEATEFIKDLPSRIGPGTAGSWGALLGACRLHGNIELAEEVAEFLFRLEPGNSGRYVMM 526
Query: 298 YNILAGVWRYGDAERLRRVVDER 320
NI A ++ DA R+R ++ E+
Sbjct: 527 SNIYAAAGQWDDARRVRGLMKEK 549
Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 31/146 (21%)
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK-VVLKP----NRVTFLS 193
A +LF+ + + +NLVS+ +++S A HG EA+ R+ + L P +R T +S
Sbjct: 126 AFRLFDTMPADSRNLVSYNTLMSSLAHHGRQVEALRVVARLARDRFLGPGLAMDRFTVVS 185
Query: 194 VLNACS-----------HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
V AC+ HG +V G++F M +++ +A R+E
Sbjct: 186 VATACAGIGAARPLREMHGAVVVSGMEFTVIMAN------------AMLNAYSKARRVED 233
Query: 243 AEKVASGIPSEITNVVVWRTLL-GAC 267
A + + I + V W +++ G C
Sbjct: 234 ARHLFDQV--SIRDNVTWTSMISGYC 257
>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 788
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 112/311 (36%), Positives = 181/311 (58%), Gaps = 6/311 (1%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
+ T + E+++AR LF+E P +++ SW +I GYT+ ++ A++LF+ M+
Sbjct: 354 TALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP--QL 411
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P+ +T+ ++ A Q G + + +HG + + +++VS L+D YAKCG I A
Sbjct: 412 SPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLES-NVYVSTALVDMYAKCGSIVEAR 470
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
+LF D+ V+ KN+V+W ++I+G+ +HG GKEA++ F M + + P VTFLS+L ACSH
Sbjct: 471 QLF-DLMVD-KNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSH 528
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
GLV EG + F M P +HY C++D+LGRAG+L A + +P E VW
Sbjct: 529 SGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLE-PGPAVW 587
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320
LLGAC H N EM ++++ +++ G YVL+ NI + + A +R+VV +R
Sbjct: 588 GALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKR 647
Query: 321 NALKFPGRSLV 331
K PG +L+
Sbjct: 648 KLAKTPGCTLI 658
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 129/268 (48%), Gaps = 15/268 (5%)
Query: 23 MITGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACE 78
++TGL+ K G+ R LF+++ +++S+ +I GYT + + A+ LFR ++A
Sbjct: 251 VLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASG 310
Query: 79 YTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFS 138
S T++ + P ++ +LI K G VS L Y + +
Sbjct: 311 QRVNSS-TLVGLIPVYLPFNHLQLSRLIQNLSLKIGI-ILQPSVSTALTTVYCRLNEVQF 368
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198
A +LF++ K+L SW ++ISG+ +G+ A+ F+ M L PN VT S+L+AC
Sbjct: 369 ARQLFDE--SPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP-QLSPNPVTVTSILSAC 425
Query: 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
+ G + G K+ +++ + ++ L+DM + G + +A ++ + + NVV
Sbjct: 426 AQLGALSIG-KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDK--NVV 482
Query: 259 VWRTLLGACSFHGNVEMGERVTRKILEM 286
W ++ HG+ G+ + EM
Sbjct: 483 TWNAMITGYGLHGH---GKEALKLFYEM 507
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 4/164 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL + ++ K+ E AR +F+ MP R+ V W +I G++R + ++ +F M+
Sbjct: 147 NLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDML 206
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
+ S T+ V A+ + + R I K+G ++ ++V LI Y+KCG
Sbjct: 207 DVGLSFDST-TLATVLTAVAELQEYRLGMGIQCLASKKGLHS-DVYVLTGLISLYSKCGK 264
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
LF+ I ++ +L+S+ ++ISG+ + + AV F +
Sbjct: 265 SCKGRILFDQI--DQPDLISYNAMISGYTFNHETESAVTLFREL 306
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 37/194 (19%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ +LFD + ++N+VTWN MITG G + A LF EM +GI
Sbjct: 468 EARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEM------LQSGI--------- 512
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRN-CQLIHGYGEKRGFNAFHIHV 122
P+ +T L++ A +G V ++ H GF H
Sbjct: 513 -----------------PPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHY 555
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
+ C++D + G + +AL+ E + +E V W +++ +H + A +R+ +
Sbjct: 556 A-CMVDILGRAGQLTNALEFIERMPLEPGPAV-WGALLGACMIHKNTEMANVASKRLFQ- 612
Query: 183 VLKPNRVTFLSVLN 196
L P V + +L+
Sbjct: 613 -LDPENVGYYVLLS 625
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 3/169 (1%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G + + R LF ++ ++ + +I G++ ++ L+ + P T
Sbjct: 60 GAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFA 119
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A + D R L+H + G A ++ V + ++D Y K A K+F D+ ER
Sbjct: 120 ISAASRLEDERVGVLLHAHSIVDGV-ASNLFVGSAIVDLYFKFTRAELARKVF-DVMPER 177
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS 199
+ V W ++ISGF+ + ++++ F M V L + T +VL A +
Sbjct: 178 -DTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVA 225
>gi|357153639|ref|XP_003576518.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 538
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 117/331 (35%), Positives = 192/331 (58%), Gaps = 8/331 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D K+FDE+PER + WN M++ V+ GE++ A F EMP R+ V+WT +I G
Sbjct: 205 LGDAGKVFDEMPERTVAAWNCMLSAYVRCGEVDAALHFFGEMPGRDAVAWTTVIAGCANA 264
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R+ A+ LF RM + +T++A+ A + GD++ + +H ++ G + +
Sbjct: 265 GRAAEAVDLFWRMRKARVKD-DAVTMVALLTACAELGDLQLGRWVHARVDQDGQDQRIVL 323
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N LI Y +CG + A +F + + R++ VSWT++ISG A+HG +EA+E F RM++
Sbjct: 324 LDNALIHMYVRCGAVEDAHCMF--LRMPRRSTVSWTTMISGLAIHGRAEEALELFRRMEE 381
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+P+ T L+VL ACSH G V+ ++F+ M + P+I HYGC++DML R+ RL
Sbjct: 382 ---RPDGATLLAVLWACSHSGKVDFAWRYFESMERLYGITPEIHHYGCMVDMLCRSRRLY 438
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG-GDYVLMYNI 300
+A ++A +P + +N VW LL C GN+E+ +V +++E++ G VL+ N+
Sbjct: 439 EALELAETMPLQ-SNEAVWGALLSGCKREGNLELSAKVVDRLIELQPNRAVGHLVLLSNM 497
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A V ++ A+ +R V N+ K G S V
Sbjct: 498 YAAVGQWEQAQMVRERVAAMNSGKPAGGSWV 528
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 105/248 (42%), Gaps = 36/248 (14%)
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS------------------ 147
+H G HV L+D YA G + A K+F+++
Sbjct: 175 LHASALATGLAQSSSHVMTSLLDMYATAGQLGDAGKVFDEMPERTVAAWNCMLSAYVRCG 234
Query: 148 -----------VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLN 196
+ ++ V+WT++I+G A G EAV+ F RM+K +K + VT +++L
Sbjct: 235 EVDAALHFFGEMPGRDAVAWTTVIAGCANAGRAAEAVDLFWRMRKARVKDDAVTMVALLT 294
Query: 197 ACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256
AC+ G ++ G ++ ++ + + LI M R G +E A + +P T
Sbjct: 295 ACAELGDLQLGRWVHARVDQDGQDQRIVLLDNALIHMYVRCGAVEDAHCMFLRMPRRST- 353
Query: 257 VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG----VWRYGDA-E 311
V W T++ + HG E + R++ E G VL +G WRY ++ E
Sbjct: 354 -VSWTTMISGLAIHGRAEEALELFRRMEERPDGATLLAVLWACSHSGKVDFAWRYFESME 412
Query: 312 RLRRVVDE 319
RL + E
Sbjct: 413 RLYGITPE 420
>gi|297826975|ref|XP_002881370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327209|gb|EFH57629.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 627
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 117/331 (35%), Positives = 192/331 (58%), Gaps = 4/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + +LF +PER+ +WN MITG ++ E+ A LF+ MP +NV+SWT +I GY
Sbjct: 249 IDEADQLFQVMPERDFASWNTMITGFIRNREINRACGLFDRMPQKNVISWTAMITGYVEN 308
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ AL +F +M+ +P+ T +++ A + Q IH K +
Sbjct: 309 KENEEALKVFSKMLRDGCVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQENEV- 367
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V++ LI+ Y+K G + +A K+F++ V +++L+SW S+I+ +A HG GKEA+E +++M+K
Sbjct: 368 VTSALINMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYDQMRK 427
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRL 240
KP+ VT+L++L ACSH GLVE+G++FF ++V + E LP +HY CL+D+ GRAGRL
Sbjct: 428 HGFKPSEVTYLNLLFACSHAGLVEKGMEFFKELVRD-ESLPLREEHYTCLVDLCGRAGRL 486
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
+ + + ++ + +L AC+ H V + + V +K+LE G YV+M NI
Sbjct: 487 KDVLNFINCDDARLSR-SFYGAILSACNVHSEVSIAKEVVKKVLETGSDDAGTYVMMSNI 545
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + A +R + E+ K PG S V
Sbjct: 546 YAASGKREKAAEMRMKMKEKGLKKQPGCSWV 576
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 146/271 (53%), Gaps = 22/271 (8%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFDE+PERN V+WN MI LV+ G ++ A +LFE MP ++V+SWT ++DG + NG
Sbjct: 161 ELFDEMPERNTVSWNTMIKALVQRGRIDEAMNLFERMPIKDVISWTAMVDGLAK----NG 216
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
+ RR+ C E + I+ A+ N + + +R F ++ N +
Sbjct: 217 KVDEARRLFDC-MPERNIISWNAMITGYTYNNRIDEADQLFQVMPERDFASW-----NTM 270
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLK 185
I + + I A LF+ + +KN++SWT++I+G+ + +EA++ F +M + +K
Sbjct: 271 ITGFIRNREINRACGLFDRMP--QKNVISWTAMITGYVENKENEEALKVFSKMLRDGCVK 328
Query: 186 PNRVTFLSVLNACSH-GGLVE--EGLKFFDKMV-EECEVLPDIKHYGCLIDMLGRAGRLE 241
PN T++S+L+ACS GLVE + + K V +E EV+ LI+M ++G L
Sbjct: 329 PNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQENEVVT-----SALINMYSKSGELI 383
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
A K+ +++ W +++ + HG+
Sbjct: 384 AARKMFDNGLVCQRDLISWNSMIAVYAHHGH 414
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 124/264 (46%), Gaps = 55/264 (20%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR-NVVSWTGIIDGYTR 60
L + KLFD LPER++VTW +ITG +K G + AR LF+ + R NVV+WT ++ GY R
Sbjct: 62 LAEARKLFDGLPERDVVTWTDVITGYIKLGNMREARELFDRVDSRKNVVTWTAMVSGYLR 121
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+ + A LF+ M E I++ W
Sbjct: 122 SKQLSVAETLFQEM--------PERNIVS-----W------------------------- 143
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
N +ID YA+ G I AL+LF+++ +N VSW ++I G EA+ FERM
Sbjct: 144 ---NTMIDGYAQSGRIDKALELFDEMP--ERNTVSWNTMIKALVQRGRIDEAMNLFERMP 198
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ +++ ++++ + G V+E + FD M E +I + +I R+
Sbjct: 199 ----IKDVISWTAMVDGLAKNGKVDEARRLFDCMPER-----NIISWNAMITGYTYNNRI 249
Query: 241 EQAEKVASGIPSEITNVVVWRTLL 264
++A+++ +P + W T++
Sbjct: 250 DEADQLFQVMPER--DFASWNTMI 271
>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 122/329 (37%), Positives = 187/329 (56%), Gaps = 9/329 (2%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FD +P RN+V+ M+ G + ++ AR +F M +NVVSW +I GYT+ + A
Sbjct: 310 VFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEA 369
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF-----NAFHIHV 122
+ LF ++ E P+ T + A D++ + H K GF I V
Sbjct: 370 VRLFL-LLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFV 428
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
N LID Y KCG + +FE + VER ++VSW ++I G+A +G G A+E F +M
Sbjct: 429 GNSLIDMYMKCGMVEDGCLVFERM-VER-DVVSWNAMIVGYAQNGYGTNALEIFRKMLVS 486
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
KP+ VT + VL+ACSH GLVEEG ++F M E + P H+ C++D+LGRAG L++
Sbjct: 487 GQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDE 546
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302
A + +P + N VVW +LL AC HGN+E+G+ V K++E++ G YVL+ N+ A
Sbjct: 547 ANDLIQTMPMQPDN-VVWGSLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYA 605
Query: 303 GVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ R+ D R+R+ + +R +K PG S +
Sbjct: 606 ELGRWKDVVRVRKQMRQRGVIKQPGCSWI 634
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 140/258 (54%), Gaps = 6/258 (2%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
+ +D K+FD +P+RN ++N +++ L K+G+L+ A ++F+ MP + SW ++ G+ +
Sbjct: 69 YFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQ 128
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+R AL F M + ++ +E + + A D+ IH K + +
Sbjct: 129 HDRFEEALRFFVDMHSEDFV-LNEYSFGSALSACAGLTDLNMGIQIHALISKSRY-LLDV 186
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
++ + L+D Y+KCG + A + F+ ++V +N+VSW S+I+ + +G +A+E F M
Sbjct: 187 YMGSALVDMYSKCGVVACAQRAFDGMAV--RNIVSWNSLITCYEQNGPAGKALEVFVMMM 244
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
++P+ +T SV++AC+ + EGL+ ++V+ + D+ L+DM + R+
Sbjct: 245 DNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRV 304
Query: 241 EQAEKVASGIPSEITNVV 258
+A V +P + NVV
Sbjct: 305 NEARLVFDRMP--LRNVV 320
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 35/227 (15%)
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI------------------- 146
IH K F++ I + N L+D Y KCG A K+F+ +
Sbjct: 41 IHARIIKTQFSS-EIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFG 99
Query: 147 ----------SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLN 196
S+ + SW +++SGFA H +EA+ F M N +F S L+
Sbjct: 100 KLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALS 159
Query: 197 ACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256
AC+ + G++ ++ + L D+ L+DM + G + A++ G+ + N
Sbjct: 160 ACAGLTDLNMGIQIH-ALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMA--VRN 216
Query: 257 VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
+V W +L+ + N G+ + ++ M+ G D + + ++++
Sbjct: 217 IVSWNSLITC--YEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSA 261
>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g30700-like [Cucumis sativus]
Length = 788
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 112/311 (36%), Positives = 181/311 (58%), Gaps = 6/311 (1%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
+ T + E+++AR LF+E P +++ SW +I GYT+ ++ A++LF+ M+
Sbjct: 354 TALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP--QL 411
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P+ +T+ ++ A Q G + + +HG + + +++VS L+D YAKCG I A
Sbjct: 412 SPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLES-NVYVSTALVDMYAKCGSIVEAR 470
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
+LF D+ V+ KN+V+W ++I+G+ +HG GKEA++ F M + + P VTFLS+L ACSH
Sbjct: 471 QLF-DLMVD-KNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSH 528
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
GLV EG + F M P +HY C++D+LGRAG+L A + +P E VW
Sbjct: 529 SGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLE-PGPAVW 587
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320
LLGAC H N EM ++++ +++ G YVL+ NI + + A +R+VV +R
Sbjct: 588 GALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKR 647
Query: 321 NALKFPGRSLV 331
K PG +L+
Sbjct: 648 KLAKTPGCTLI 658
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 129/268 (48%), Gaps = 15/268 (5%)
Query: 23 MITGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACE 78
++TGL+ K G+ R LF+++ +++S+ +I GYT + + A+ LFR ++A
Sbjct: 251 VLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASG 310
Query: 79 YTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFS 138
S T++ + P ++ +LI K G VS L Y + +
Sbjct: 311 QRVNSS-TLVGLIPVYLPFNHLQLSRLIQNLSLKIGI-ILQPSVSTALTTVYCRLNEVQF 368
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198
A +LF++ K+L SW ++ISG+ +G+ A+ F+ M L PN VT S+L+AC
Sbjct: 369 ARQLFDE--SPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP-QLSPNPVTVTSILSAC 425
Query: 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
+ G + G K+ +++ + ++ L+DM + G + +A ++ + + NVV
Sbjct: 426 AQLGALSIG-KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDK--NVV 482
Query: 259 VWRTLLGACSFHGNVEMGERVTRKILEM 286
W ++ HG+ G+ + EM
Sbjct: 483 TWNAMITGYGLHGH---GKEALKLFYEM 507
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 87/180 (48%), Gaps = 4/180 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL + ++ K+ E AR +F+ MP R+ V W +I G++R + ++ +F M+
Sbjct: 147 NLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDML 206
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
+ S T+ V A+ + + R I K+G ++ ++V LI Y+KCG
Sbjct: 207 DVGLSFDST-TLATVLTAVAELQEYRLGMGIQCLASKKGLHS-DVYVLTGLISLYSKCGK 264
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
LF+ I ++ +L+S+ ++ISG+ + + AV F + + N T + ++
Sbjct: 265 SCKGRILFDQI--DQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLI 322
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 37/194 (19%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ +LFD + ++N+VTWN MITG G + A LF EM +GI
Sbjct: 468 EARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEM------LQSGI--------- 512
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRN-CQLIHGYGEKRGFNAFHIHV 122
P+ +T L++ A +G V ++ H GF H
Sbjct: 513 -----------------PPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHY 555
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
+ C++D + G + +AL+ E + +E V W +++ +H + A +R+ +
Sbjct: 556 A-CMVDILGRAGQLTNALEFIERMPLEPGPAV-WGALLGACMIHKNTEMANVASKRLFQ- 612
Query: 183 VLKPNRVTFLSVLN 196
L P V + +L+
Sbjct: 613 -LDPENVGYYVLLS 625
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 3/169 (1%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G + + R LF ++ ++ + +I G++ ++ L+ + P T
Sbjct: 60 GAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFA 119
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A + D R L+H + G A ++ V + ++D Y K A K+F D+ ER
Sbjct: 120 ISAASRLEDERVGVLLHAHSIVDGV-ASNLFVGSAIVDLYFKFTRAELARKVF-DVMPER 177
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS 199
+ V W ++ISGF+ + ++++ F M V L + T +VL A +
Sbjct: 178 -DTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVA 225
>gi|147828480|emb|CAN64316.1| hypothetical protein VITISV_027915 [Vitis vinifera]
Length = 841
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 185/340 (54%), Gaps = 37/340 (10%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LF ++PERN +WN MI+G V++G+++ ARS F+ MP N VSW +I GY++ + A
Sbjct: 223 LFQQMPERNFASWNAMISGYVEFGDIDSARSFFDAMPQXNNVSWMTMISGYSKCGDVDSA 282
Query: 68 -----------LALFRRMVACEY---------------------TEPSEITILAVFPAIW 95
L LF M+AC +P E+T+ +V A
Sbjct: 283 CELFDQVGGKDLLLFNAMIACYAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACS 342
Query: 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 155
Q GD+R I Y + G H++ L+D YAKCG I A +LF + +K+LV+
Sbjct: 343 QLGDLRFGPWIESYMRRLGIE-MDGHLATALLDLYAKCGSIDKAYELFH--GLRKKDLVA 399
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215
+T++I G ++G +A++ F+ M + PN +TF+ +L A +H GLVEEG + F M
Sbjct: 400 YTAMILGCGINGKAIDAIKLFDEMVDAQIFPNLITFIGLLTAYNHAGLVEEGYRCFTSM- 458
Query: 216 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEM 275
++ ++P + HYG ++D+LGRAGRL++A ++ +P + + VW LL AC H NVE
Sbjct: 459 KKYNLVPSVDHYGIMVDLLGRAGRLQEALELIKSMPMQ-PHAGVWGALLLACRLHNNVEF 517
Query: 276 GERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
GE + E+E G L+ NI A R+ D +RLR+
Sbjct: 518 GEIAAQHCFELEPDTTGYXSLLSNIYASGERWDDVKRLRK 557
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 143/273 (52%), Gaps = 25/273 (9%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FDE+ ERN+V+WN M+ G +K G+L A+ +F+E+P ++V+SW +I GY R
Sbjct: 160 KMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEK 219
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN-- 124
AL+LF++M E + + A+ + GD+ + R F +N
Sbjct: 220 ALSLFQQM-----PERNFASWNAMISGYVEFGDIDSA---------RSFFDAMPQXNNVS 265
Query: 125 --CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM--Q 180
+I Y+KCG + SA +LF+ + K+L+ + ++I+ +A + KEA++ F M
Sbjct: 266 WMTMISGYSKCGDVDSACELFDQVG--GKDLLLFNAMIACYAQNSRPKEALKLFNNMLNP 323
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
V ++P+ +T SV++ACS G + G + + + + D L+D+ + G +
Sbjct: 324 DVNVQPDEMTLASVISACSQLGDLRFG-PWIESYMRRLGIEMDGHLATALLDLYAKCGSI 382
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
++A ++ G+ + ++V + ++ C +G
Sbjct: 383 DKAYELFHGLRKK--DLVAYTAMILGCGINGKA 413
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 117/275 (42%), Gaps = 25/275 (9%)
Query: 34 EYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPA 93
+Y S+ + SW I T+ + A AL+ +M P+ + + A
Sbjct: 52 QYVHSVLHHSKSPDSFSWACAIRFSTQHGQFKEAFALYVQMQRWGLW-PTTFALSSALKA 110
Query: 94 IWQNGDVRNCQLIHGYGEKRGFNA--FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151
+ IHG +K GF+ I+V L+D Y K G + A K+F++++ +
Sbjct: 111 CARIAYRMGGLSIHGQVQKFGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMA--ER 168
Query: 152 NLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
N+VSW S+++G+ G A F+ + QK V+ N S+++ + G +E+ L
Sbjct: 169 NVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWN-----SMISGYARAGDMEKALSL 223
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
F +M E + + +I G ++ A +P N V W T++ S
Sbjct: 224 FQQMPER-----NFASWNAMISGYVEFGDIDSARSFFDAMPQ--XNNVSWMTMISGYSKC 276
Query: 271 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
G+V+ E+ GG +L++N + +
Sbjct: 277 GDVD-------SACELFDQVGGKDLLLFNAMIACY 304
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 33/182 (18%)
Query: 155 SWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKM 214
SW I HG KEA + +MQ+ L P S L AC+ GL +
Sbjct: 68 SWACAIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIAYRMGGLSIHGQ- 126
Query: 215 VEECEVLPDIKHYG------------CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
++ +G L+D + G +E A K+ + NVV W +
Sbjct: 127 ---------VQKFGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAER--NVVSWNS 175
Query: 263 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER---LRRVVDE 319
+L G++ + +RV +I + D + ++++G R GD E+ L + + E
Sbjct: 176 MLAGYLKSGDLVVAQRVFDEIPQK------DVISWNSMISGYARAGDMEKALSLFQQMPE 229
Query: 320 RN 321
RN
Sbjct: 230 RN 231
>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 1083
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 109/318 (34%), Positives = 184/318 (57%), Gaps = 4/318 (1%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
++++V N ++ K G + A ++F+++P ++ +SW ++ GYT+ ++ A+ +
Sbjct: 356 DKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNM 415
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M C T P++ T +++ PA G ++ IH K + V+ CLID Y KC
Sbjct: 416 MEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSL-YLDVFVATCLIDLYGKC 474
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + A+ LF +I R V W +II+ +HG G+EA++ F+ M +K + +TF+S
Sbjct: 475 GRLEDAMSLFYEI--PRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVS 532
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L+ACSH GLV+EG K FD M +E + P +KHYGC++D+LGRAG LE+A ++ +P +
Sbjct: 533 LLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQ 592
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
+ +W LL AC +GN E+G + ++LE++ G YVL+ NI A ++ ++
Sbjct: 593 -PDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKV 651
Query: 314 RRVVDERNALKFPGRSLV 331
R + +R K PG S V
Sbjct: 652 RSLARDRGLRKTPGWSSV 669
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 161/306 (52%), Gaps = 9/306 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ ++ N +I K+G L+ A+ +F++M R++VSW II Y + N + AL F+
Sbjct: 254 DSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKG 313
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M P +T++++ Q D R + I G+ +R + + + N L++ YAK
Sbjct: 314 M-QLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKL 372
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFL 192
G + A +F+ + RK+ +SW ++++G+ +G+ EA++ + M++ PN+ T++
Sbjct: 373 GYMNCAHTVFDQL--PRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWV 430
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
S++ A SH G +++G+K K+++ L D+ CLID+ G+ GRLE A + IP
Sbjct: 431 SIIPAYSHVGALQQGMKIHAKLIKNSLYL-DVFVATCLIDLYGKCGRLEDAMSLFYEIPR 489
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312
+ + V W ++ + HG E ++ + +L ER D++ ++L+ G +
Sbjct: 490 DTS--VPWNAIIASLGIHGRGEEALQLFKDMLA-ER-VKADHITFVSLLSACSHSGLVDE 545
Query: 313 LRRVVD 318
++ D
Sbjct: 546 GQKCFD 551
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 122/243 (50%), Gaps = 6/243 (2%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
++G L+ A +F +MP ++V SW +I G+ + + GAL + RM E + IT+
Sbjct: 168 RYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKG-EGVKMDTITVA 226
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
++ P Q+ DV N LIH + K G ++ + VSN LI+ Y+K G + A +F+ + V
Sbjct: 227 SILPVCAQSDDVINGVLIHLHVLKHGLDS-DVFVSNALINMYSKFGRLQDAQMVFDQMEV 285
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
++LVSW SII+ + + A+ F+ MQ ++P+ +T +S+ + S
Sbjct: 286 --RDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISR 343
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
++ + D+ L++M + G + A V +P + T + W TL+ +
Sbjct: 344 SILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDT--ISWNTLVTGYT 401
Query: 269 FHG 271
+G
Sbjct: 402 QNG 404
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 122/257 (47%), Gaps = 14/257 (5%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+N+V +I V G++ +RS F+ + +N+ SW II Y R + + A+ +
Sbjct: 51 SQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQ 110
Query: 74 ---MVACEYTEPSEITILAVFPAIWQNG-DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDT 129
M + P T FP I + + + + +H K GF + V+ L+
Sbjct: 111 LFSMCGGGHLRPDFYT----FPPILKACVSLVDGKKVHCCVFKMGFED-DVFVAASLVHL 165
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
Y++ G + A K+F D+ V K++ SW ++ISGF +G A+ RM+ +K + +
Sbjct: 166 YSRYGVLDVAHKVFVDMPV--KDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTI 223
Query: 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
T S+L C+ V G+ V + + D+ LI+M + GRL+ A+ V
Sbjct: 224 TVASILPVCAQSDDVINGV-LIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQ 282
Query: 250 IPSEITNVVVWRTLLGA 266
+ E+ ++V W +++ A
Sbjct: 283 M--EVRDLVSWNSIIAA 297
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/331 (34%), Positives = 187/331 (56%), Gaps = 7/331 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
LK +FD++ ++++V+W MI G ++ A F +MP +NVVSW II + +
Sbjct: 286 LKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQE 345
Query: 62 NRSNGALALFRRMVACEY-TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
A+ LF RM C+ ++ T++A+ + GD+ + H Y
Sbjct: 346 GLYAEAVDLFYRM--CDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNIT-LSA 402
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+ N +ID YAKCG + +A+ +F + KN VSW II A+HG GKEA+E FE+MQ
Sbjct: 403 TLCNAIIDMYAKCGALQTAMDVF--FGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQ 460
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ P+ +TF +L+ACSH GLV+ G +F+ M + PD++HY C++D+LGR G L
Sbjct: 461 ASGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRRGLL 520
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
+A + +P + +VVVW LLGAC +GN+ +G+++ +++LE+ R G YVL+ N+
Sbjct: 521 GEAISLIKKMPVK-PDVVVWSALLGACRTYGNLAIGKQIMKQLLELGRYNSGLYVLLSNM 579
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ R+ D + + +++D+ K S +
Sbjct: 580 YSESQRWDDMKNIWKILDQNGIKKCRAISFI 610
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 142/298 (47%), Gaps = 50/298 (16%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ V G + AR +F+++ R +VSW +I+GY++M RS A+ +FR M
Sbjct: 173 NAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVG-L 231
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
EP T++ + ++G+ + +H + G I V+N L+D YAKCG + A
Sbjct: 232 EPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSI-VTNALMDMYAKCGNLKCAK 290
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGM------------GK------------------ 170
+F+ + K++VSWT +I+ +A HG+ GK
Sbjct: 291 SVFDQM--LDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLY 348
Query: 171 -EAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK----FFDKMVEECEVLPDIK 225
EAV+ F RM + N T +++L++CSH G + G + FD + L +
Sbjct: 349 AEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCN-- 406
Query: 226 HYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG----NVEMGERV 279
+IDM + G L+ A V G+P + N V W ++GA + HG +EM E++
Sbjct: 407 ---AIIDMYAKCGALQTAMDVFFGMPEK--NAVSWNVIIGALALHGYGKEAIEMFEKM 459
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 136/263 (51%), Gaps = 15/263 (5%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
++T +++ V+ +L YA LF+++P N + +I GY+ + +L L+RRMV
Sbjct: 67 QVLTLGKLVSSSVQLRDLRYAHKLFDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMV 126
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQ----LIHGYGEKRGFNAFHIHVSNCLIDTYA 131
C+ P++ TI P + + ++C +H K G + H V N +++ Y
Sbjct: 127 -CDGILPNQFTI----PFVLKACAAKSCYWLGVCVHAQSFKLGMGS-HACVQNAILNIYV 180
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191
CG I SA ++F+DIS + LVSW S+I+G++ G +EAV F MQ+V L+P+ T
Sbjct: 181 ACGLITSARRVFDDIS--ERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTL 238
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
+ +L+ + G + G +F + + D L+DM + G L+ A+ V +
Sbjct: 239 VGLLSVSTKHGNFDLG-RFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQML 297
Query: 252 SEITNVVVWRTLLGACSFHGNVE 274
+ +VV W ++ A + HG ++
Sbjct: 298 DK--DVVSWTCMINAYANHGLID 318
>gi|224090799|ref|XP_002309086.1| predicted protein [Populus trichocarpa]
gi|222855062|gb|EEE92609.1| predicted protein [Populus trichocarpa]
Length = 555
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/301 (37%), Positives = 171/301 (56%), Gaps = 11/301 (3%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW 95
A +FE M +++ SW I+ + +G L LF RM+ + + +TI + PA
Sbjct: 215 ALEIFETMNEKDIFSWNSILSANELCSDHDGTLRLFDRMLG-DGVQLDLVTITTILPACS 273
Query: 96 QNGDVRNCQLIHGYGEKRGF-------NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
+ + + IHGY GF N +++ N L+D YAKCG + A +F ++S
Sbjct: 274 HLAALVHGREIHGYMIVNGFVKDGESENMYNLQTINALMDMYAKCGSMRDAGMVFYNMS- 332
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
++ SW +I G+ MHG G EA+ F M K LKPN +TF+ VL ACSH G + +G+
Sbjct: 333 -NRDTASWNIMIMGYGMHGYGNEALYMFSDMCKSGLKPNEITFVGVLLACSHAGFISQGI 391
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
KF +M + V+P I+HY C+IDMLGRAG+LE+A K+A +P + TN VVWR LL AC
Sbjct: 392 KFLGEMELKHGVVPTIQHYTCVIDMLGRAGQLEEAYKLAVTMPIQ-TNPVVWRALLAACQ 450
Query: 269 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGR 328
+GNV++ E +K+ E+ + G+YVLM N RY + +R + +++ K PG
Sbjct: 451 LYGNVDLAEVAAQKVFELNPAHCGNYVLMSNAYVAAGRYQEVLDIRHTMRQQDVKKTPGC 510
Query: 329 S 329
S
Sbjct: 511 S 511
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 129/256 (50%), Gaps = 13/256 (5%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
+++ +K ++ AR LF+E+P R+VV W +++GY ++ R + AL + R M + E
Sbjct: 101 LVSSYLKSELMKEARELFDEIPDRDVVLWNSMVNGYAQIGRFDEALGVCREM-SQEGVLM 159
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
S+ T+ V GD N +L+HG+ K GF++ + V N LID Y KC C+ AL++
Sbjct: 160 SKFTVSGVLSVFAGRGDFDNGRLVHGFMIKMGFDSC-VSVCNALIDMYGKCRCVVDALEI 218
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202
FE ++ K++ SW SI+S + + F+RM ++ + VT ++L ACSH
Sbjct: 219 FE--TMNEKDIFSWNSILSANELCSDHDGTLRLFDRMLGDGVQLDLVTITTILPACSHLA 276
Query: 203 LVEEGLKFFDKMV-------EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+ G + M+ E E + +++ L+DM + G + A V + + T
Sbjct: 277 ALVHGREIHGYMIVNGFVKDGESENMYNLQTINALMDMYAKCGSMRDAGMVFYNMSNRDT 336
Query: 256 NVVVWRTLLGACSFHG 271
W ++ HG
Sbjct: 337 --ASWNIMIMGYGMHG 350
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 6/167 (3%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
F+KDG + NL T N ++ K G + A +F M R+ SW +I GY
Sbjct: 293 FVKDG----ESENMYNLQTINALMDMYAKCGSMRDAGMVFYNMSNRDTASWNIMIMGYGM 348
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
N AL +F M +P+EIT + V A G + G E + I
Sbjct: 349 HGYGNEALYMFSDMCKSG-LKPNEITFVGVLLACSHAGFISQGIKFLGEMELKHGVVPTI 407
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 167
C+ID + G + A KL + ++ N V W ++++ ++G
Sbjct: 408 QHYTCVIDMLGRAGQLEEAYKLAVTMPIQ-TNPVVWRALLAACQLYG 453
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 90/203 (44%), Gaps = 23/203 (11%)
Query: 46 RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQL 105
RNV ++ +I G+ L + M P + T + + + +V +
Sbjct: 23 RNVFAYNALISGFVLNGLPQDGLGAYEEMRQAGVL-PDKYTFPCLIKGLCEVMEVFQVKK 81
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 165
IHG K G + ++V + L+ +Y K + A +LF++I +++V W S+++G+A
Sbjct: 82 IHGLVRKLGLD-LDMYVGSSLVSSYLKSELMKEARELFDEIP--DRDVVLWNSMVNGYAQ 138
Query: 166 HGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS-----------HGGLVEEGLKFFDKM 214
G EA+ M + + ++ T VL+ + HG +++ G FD
Sbjct: 139 IGRFDEALGVCREMSQEGVLMSKFTVSGVLSVFAGRGDFDNGRLVHGFMIKMG---FDSC 195
Query: 215 VEECEVLPDIKHYG---CLIDML 234
V C L D+ YG C++D L
Sbjct: 196 VSVCNALIDM--YGKCRCVVDAL 216
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 77/158 (48%), Gaps = 11/158 (6%)
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
YAKC + AL + + +N+ ++ ++ISGF ++G+ ++ + +E M++ + P++
Sbjct: 2 YAKCNQMNQALLVLNRTADYARNVFAYNALISGFVLNGLPQDGLGAYEEMRQAGVLPDKY 61
Query: 190 TFLSVLNACSHGGLVEE----GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
TF C GL E +K +V + + D+ L+ ++ +++A +
Sbjct: 62 TF-----PCLIKGLCEVMEVFQVKKIHGLVRKLGLDLDMYVGSSLVSSYLKSELMKEARE 116
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
+ IP +VV+W +++ + G + V R++
Sbjct: 117 LFDEIPDR--DVVLWNSMVNGYAQIGRFDEALGVCREM 152
>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 848
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/315 (36%), Positives = 185/315 (58%), Gaps = 5/315 (1%)
Query: 17 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVA 76
+V N ++ K G ++ A +F +P ++VVSW +I GYT+ ++ A+ ++R M
Sbjct: 410 VVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEE 469
Query: 77 CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136
C + ++ T +++ A G ++ IHG+ K + + V CLID Y KCG +
Sbjct: 470 CREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLH-LDVFVGTCLIDLYGKCGRL 528
Query: 137 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLN 196
A+ LF V R++ V W +IIS +HG G++A++ F MQ +KP+ VTF+S+L+
Sbjct: 529 VDAMCLF--YQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLS 586
Query: 197 ACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256
ACSH GLV+EG K+F +++E + P +KHYGC++D+LGRAG LE A +P +
Sbjct: 587 ACSHSGLVDEG-KWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLH-PD 644
Query: 257 VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRV 316
+W LLGAC HGN+E+G+ + ++ E++ G YVL+ NI A V ++ +++R +
Sbjct: 645 ASIWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSL 704
Query: 317 VDERNALKFPGRSLV 331
ER K PG S +
Sbjct: 705 ARERGLKKTPGWSSI 719
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 159/297 (53%), Gaps = 11/297 (3%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E L N +I K+G L A+ +F++M R+VVSW II Y + + A F +
Sbjct: 305 EFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFK 364
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M EP +T++++ Q+ D +N + +HG+ +RG+ + + N ++D YAK
Sbjct: 365 M-QLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKL 423
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV-VLKPNRVTFL 192
G I SA K+F I V K++VSW ++ISG+ +G+ EA+E + M++ +K N+ T++
Sbjct: 424 GVIDSAHKVFNLIPV--KDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWV 481
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
S+L A +H G +++G++ +++ L D+ CLID+ G+ GRL A + +P
Sbjct: 482 SILAAYAHVGALQQGMRIHGHLIKTNLHL-DVFVGTCLIDLYGKCGRLVDAMCLFYQVPR 540
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEME-RGYGGDYVLMYNILAGVWRYG 308
E + V W ++ HG+ GE+ + EM+ G D+V ++L+ G
Sbjct: 541 ESS--VPWNAIISCHGIHGH---GEKALKLFREMQDEGVKPDHVTFISLLSACSHSG 592
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 132/271 (48%), Gaps = 11/271 (4%)
Query: 20 WNVMITGLV-----KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
W+V + + ++G + ARSLF++MP R++ SW +I G + + AL + M
Sbjct: 205 WDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEM 264
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
E +T+ ++ P Q GD+ LIH Y K G F + VSN LI+ YAK G
Sbjct: 265 -RLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLE-FELFVSNALINMYAKFG 322
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
+ A K+F+ + + +++VSW SII+ + + A F +MQ L+P+ +T +S+
Sbjct: 323 NLGDAQKVFQQMFL--RDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSL 380
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
+ + + ++ ++ + ++DM + G ++ A KV + IP +
Sbjct: 381 ASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIP--V 438
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
+VV W TL+ + +G V R + E
Sbjct: 439 KDVVSWNTLISGYTQNGLASEAIEVYRMMEE 469
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 110/239 (46%), Gaps = 15/239 (6%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G++ +R F+++ ++V +W +I Y R A+ F +++ + T V
Sbjct: 122 GDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPV 181
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A D R IH + K GF + + V+ LI Y++ G + A LF+D+
Sbjct: 182 LKACQTLVDGRK---IHCWVFKLGFQ-WDVFVAASLIHMYSRFGFVGIARSLFDDMPF-- 235
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
+++ SW ++ISG +G +A++ + M+ + + VT S+L C+ G +
Sbjct: 236 RDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLI 295
Query: 211 FDKMVE---ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
+++ E E+ LI+M + G L A+KV + + +VV W +++ A
Sbjct: 296 HLYVIKHGLEFELFVS----NALINMYAKFGNLGDAQKVFQQM--FLRDVVSWNSIIAA 348
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 21/194 (10%)
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+S L++ YA G + + F+ I +RK++ +W S+IS + +G +EA++ F ++
Sbjct: 110 ISIRLVNLYASLGDVSLSRGTFDQI--QRKDVYTWNSMISAYVRNGHFREAIDCFYQLLL 167
Query: 182 VV-LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP-----DIKHYGCLIDMLG 235
V + + TF VL AC + +G K C V D+ LI M
Sbjct: 168 VTKFQADFYTFPPVLKACQ---TLVDGRKI------HCWVFKLGFQWDVFVAASLIHMYS 218
Query: 236 RAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV 295
R G + A + +P ++ W ++ +GN V + + +E G D V
Sbjct: 219 RFGFVGIARSLFDDMP--FRDMGSWNAMISGLIQNGNAAQALDVLDE-MRLE-GINMDSV 274
Query: 296 LMYNILAGVWRYGD 309
+ +IL + GD
Sbjct: 275 TVASILPVCAQLGD 288
>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
Length = 816
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 178/311 (57%), Gaps = 4/311 (1%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I K G ++ AR +FE +P ++V+SW +I GY++ +N A+ ++ M
Sbjct: 381 NAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGA 440
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P++ T +++ A Q G ++ HG K F F I VS CL+D Y KCG + AL
Sbjct: 441 VPNQGTWVSILTAHSQLGALKQGMKAHGQLIK-NFLYFDIFVSTCLVDMYGKCGKLADAL 499
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
LF + V ++ VSW +IIS +HG G +AV+ F+ MQ +KP+ +TF+S+L+ACSH
Sbjct: 500 SLFYE--VPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSH 557
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
GLV+EG F M E + P +KHYGC++D+ GRAG LE+A +P +V VW
Sbjct: 558 SGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVR-PDVSVW 616
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320
LLGAC H NVE+ V+ +L++E G YVL+ NI A + + + +R + +R
Sbjct: 617 GALLGACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDR 676
Query: 321 NALKFPGRSLV 331
K PG S +
Sbjct: 677 GLKKTPGWSSI 687
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 158/297 (53%), Gaps = 11/297 (3%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E +L N +I K+GEL A ++F +M R++VSW ++ + + + AL ++ +
Sbjct: 272 EFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNK 331
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M + P +T++++ + G+ + + IHG+ +R + I + N +ID YAK
Sbjct: 332 MHSIGVV-PDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKL 390
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFL 192
G I SA K+FE + V K+++SW S+I+G++ +G+ EA++ + M+ PN+ T++
Sbjct: 391 GFIDSARKVFEGLPV--KDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWV 448
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
S+L A S G +++G+K ++++ + DI CL+DM G+ G+L A + +P
Sbjct: 449 SILTAHSQLGALKQGMKAHGQLIKNF-LYFDIFVSTCLVDMYGKCGKLADALSLFYEVPH 507
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEME-RGYGGDYVLMYNILAGVWRYG 308
+ + V W ++ HG G + + EM+ G D++ ++L+ G
Sbjct: 508 QSS--VSWNAIISCHGLHG---YGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSG 559
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 120/243 (49%), Gaps = 6/243 (2%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
++G + A +LF+ M R++ +W +I G+ + AL +F M + S +TI
Sbjct: 186 RFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDS-VTIS 244
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
++ P Q D+ + LIH Y K G F + V N LI+ YAK G + SA +F + V
Sbjct: 245 SLLPICVQLDDIISGVLIHVYAIKLGLE-FDLFVCNALINMYAKFGELRSAETIFNQMKV 303
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
+++VSW S+++ F + A+ + +M + + P+ +T +S+ + + G
Sbjct: 304 --RDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSR 361
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
+ C L DI +IDM + G ++ A KV G+P + +V+ W +L+ S
Sbjct: 362 SIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLP--VKDVISWNSLITGYS 419
Query: 269 FHG 271
+G
Sbjct: 420 QNG 422
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 119/247 (48%), Gaps = 31/247 (12%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G++ +AR F+++ ++V +W +I Y R+ + A+ F ++ + + T
Sbjct: 89 GDIPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFP-- 146
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
P I G++ + + +H K GF ++++ I Y++ G + A LF+++ +
Sbjct: 147 -PVIRACGNLDDGRKVHCLVLKLGFEC-DVYIAASFIHFYSRFGFVSLACNLFDNMMI-- 202
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS----------- 199
+++ +W ++ISGF ++G EA+E F+ M+ + + VT S+L C
Sbjct: 203 RDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLI 262
Query: 200 HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVV 259
H ++ GL+F D+ LI+M + G L AE + + + ++ ++V
Sbjct: 263 HVYAIKLGLEF------------DLFVCNALINMYAKFGELRSAETIFNQM--KVRDIVS 308
Query: 260 WRTLLGA 266
W +LL A
Sbjct: 309 WNSLLAA 315
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 115/320 (35%), Positives = 192/320 (60%), Gaps = 7/320 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL N +I K GE+E A L E + ++V+SW +I GYT MN AL LF+ M+
Sbjct: 241 NLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEML 300
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN---CLIDTYAK 132
T P+++T+L++ PA G + + IH Y +K+ + S+ LID YAK
Sbjct: 301 RSGET-PNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAK 359
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
CG I +A ++ D S ++L +W ++I GFAMHG A + F RM+K ++P+ +TF+
Sbjct: 360 CGDIDAAPQV-SDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFV 418
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
+L+ACSH G+++ G F M ++ + P ++HYGC+ID+LG +G ++AE++ + +P
Sbjct: 419 GLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPM 478
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312
E + V+W +LL AC HGN+E+GE +K++++E G YVL+ NI A ++ + +
Sbjct: 479 E-PDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXK 537
Query: 313 LRRVVDERN-ALKFPGRSLV 331
+R +++++ K PG S +
Sbjct: 538 IRTLLNDKGMKKKVPGCSSI 557
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 145/273 (53%), Gaps = 8/273 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+D K+FD R++V++ +ITG G +E A+ +F+E+P ++VVSW +I GY
Sbjct: 126 LEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAET 185
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL LF+ M+ +P E T+ V A Q+G + + +H + GF + ++
Sbjct: 186 GNYKKALELFKEMMKTN-VKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGS-NLK 243
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N LID Y+KCG + +A +L E +S K+++SW ++I G+ + KEA+ F+ M +
Sbjct: 244 IVNALIDLYSKCGEVETACELLEGLS--NKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 301
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGL---KFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
PN VT LS+L AC+H G ++ G + DK ++ V LIDM + G
Sbjct: 302 SGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCG 361
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
++ A +V+ ++ W ++ + HG
Sbjct: 362 DIDAAPQVSDSSAFN-RSLSTWNAMIFGFAMHG 393
Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 5/145 (3%)
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198
A+ +FE ++ N + W + G A+ A++ + M + L PN TF +L +C
Sbjct: 28 AISVFE--TIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSC 85
Query: 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
+ +EG + +++ L D+ + LI M + GRLE A+KV S +VV
Sbjct: 86 AKSKTFKEGQQIHGHVLKLGFDL-DLYVHTSLISMYAQNGRLEDAQKVFDR--SSHRDVV 142
Query: 259 VWRTLLGACSFHGNVEMGERVTRKI 283
+ L+ + G +E +++ +I
Sbjct: 143 SYTALITGYASRGYIESAQKMFDEI 167
>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 633
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/321 (35%), Positives = 187/321 (58%), Gaps = 4/321 (1%)
Query: 13 PERNLVT-WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALF 71
P +++V W +++ GE++ AR LF++M R+VVSWT +I GY+ AL LF
Sbjct: 284 PGKSVVAAWTSLVSAYALRGEVKVARRLFDQMGERDVVSWTAMISGYSHAGCFQEALELF 343
Query: 72 RRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIH-GYGEKRGFNAFHIHVSNCLIDTY 130
++ +P E+ ++A A + G + + IH Y + + + ++ ++D Y
Sbjct: 344 VKLEGLG-MKPDEVAVVAALSACARLGALELGRRIHRQYAGENWTCSINRGFTSAVVDMY 402
Query: 131 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVT 190
AKCG I AL +F S ++K + SIISG A HG G+ A FE M + LKP+ +T
Sbjct: 403 AKCGSIDIALDVFRKTSDDKKTTFLYNSIISGLAHHGRGEYAKNLFEEMGLLGLKPDNIT 462
Query: 191 FLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI 250
F++VL+AC H GLV+ G K F+ M V P+++HYGC++D+LGRAG L++A ++ +
Sbjct: 463 FVAVLSACGHCGLVDFGKKLFESMFTVYGVSPEMEHYGCMVDLLGRAGHLDEAHRLILKM 522
Query: 251 PSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDA 310
P + N V+WR LL AC HG+V + + +++E++ +G YV++ N+L+ ++ +A
Sbjct: 523 PFK-ANAVIWRALLSACKVHGDVALARVASYELVELQHDHGAGYVMLSNMLSDTDQHDEA 581
Query: 311 ERLRRVVDERNALKFPGRSLV 331
LR+ +D K PG S V
Sbjct: 582 ASLRKAIDNVGIQKPPGWSYV 602
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 132/295 (44%), Gaps = 40/295 (13%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ +G++ A +F+E R+ VS+ +I+G+ R +G +F M
Sbjct: 157 NALLNFYCGFGDVVNAYKVFDESFVRDCVSFNTMINGFARKGDVSGCFRVFGEMRGV-CV 215
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHG--YGEKRGFNAFHIHVSNCLIDTYAKCG---- 134
P E T +A+ D R + +HG Y E F ++ + N L+D YAKCG
Sbjct: 216 RPDEYTFVALLSGCSVLEDYRIGRQVHGLVYRELGCFGG-NVLLVNKLVDMYAKCGRLVM 274
Query: 135 -------------------CIFSALKLFEDISVER--------KNLVSWTSIISGFAMHG 167
+ SA L ++ V R +++VSWT++ISG++ G
Sbjct: 275 AETVLSVVKPGKSVVAAWTSLVSAYALRGEVKVARRLFDQMGERDVVSWTAMISGYSHAG 334
Query: 168 MGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE---CEVLPDI 224
+EA+E F +++ + +KP+ V ++ L+AC+ G +E G + + E C + +
Sbjct: 335 CFQEALELFVKLEGLGMKPDEVAVVAALSACARLGALELGRRIHRQYAGENWTCSI--NR 392
Query: 225 KHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERV 279
++DM + G ++ A V + ++ +++ + HG E + +
Sbjct: 393 GFTSAVVDMYAKCGSIDIALDVFRKTSDDKKTTFLYNSIISGLAHHGRGEYAKNL 447
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 125/262 (47%), Gaps = 24/262 (9%)
Query: 38 SLFEEMPCRNVVSWTGIIDGYTRMNRS-NGALALFRRMVACE-----YTEPSEITILA-V 90
+LF ++ ++ W II Y++++ +LF+ M+ +T P + A V
Sbjct: 70 TLFTQITNPDIFLWNAIIKAYSQIHSPPQHPFSLFKTMLNSSVLPDSFTFPFLLKACANV 129
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
+ Q G +C ++ + GF + + V+N L++ Y G + +A K+F++ V
Sbjct: 130 LISAPQFGFQVHCHVL-----RNGFGS-DVFVNNALLNFYCGFGDVVNAYKVFDESFV-- 181
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS-----HGGLVE 205
++ VS+ ++I+GFA G F M+ V ++P+ TF+++L+ CS G
Sbjct: 182 RDCVSFNTMINGFARKGDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCSVLEDYRIGRQV 241
Query: 206 EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
GL + + VL K L+DM + GRL AE V S + + V W +L+
Sbjct: 242 HGLVYRELGCFGGNVLLVNK----LVDMYAKCGRLVMAETVLSVVKPGKSVVAAWTSLVS 297
Query: 266 ACSFHGNVEMGERVTRKILEME 287
A + G V++ R+ ++ E +
Sbjct: 298 AYALRGEVKVARRLFDQMGERD 319
>gi|413943789|gb|AFW76438.1| hypothetical protein ZEAMMB73_890738 [Zea mays]
Length = 529
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 192/332 (57%), Gaps = 5/332 (1%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
+L++ K+F+++PERN+++W ++++G G+L+ AR F + ++++ WT +I+ +
Sbjct: 196 YLEEAVKMFEQMPERNIISWTILVSGYGIAGQLDKARVFFYQCTQKDLILWTSMINACVQ 255
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
AL LFR M + EP + T++ + G + + IH Y E R +
Sbjct: 256 HGSFEEALILFRDM-QLQRVEPDKFTVVTLLTCCANIGALDQGEWIHQYAESRNMKIDAV 314
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+ LI+ Y+KCG + +L++F ++ K+ +WT+II G A +G +A+E FE MQ
Sbjct: 315 -LGTALIEMYSKCGHVDKSLQIFG--RMQGKDAAAWTAIICGLATNGQASKALELFEEMQ 371
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ KP+ +TF+ VL+AC HGGLV+EG ++F M E + P I+HY CL+++LG AG L
Sbjct: 372 RSKTKPDGITFIGVLSACCHGGLVDEGQRYFQAMKEVYHIEPRIEHYSCLVNLLGHAGLL 431
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY-VLMYN 299
+AEK+ + +P + ++ LL AC +GNVEM E +T++I + + D VLM N
Sbjct: 432 YEAEKLITDMPVNNDTMPLFGALLTACKANGNVEMSEWLTKRIAKEDCSPNPDVNVLMSN 491
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ A R+ +A R+R + K G S++
Sbjct: 492 VYATASRWEEAIRVRSKMTNPAVKKTAGCSMI 523
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 109/215 (50%), Gaps = 12/215 (5%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G + AR +F+EMP R +V W ++ Y R R A+AL +M + T P +T++
Sbjct: 95 GRADSARRVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVALAVQMESGGAT-PDRVTLVTA 153
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A + GD+ + IH Y + G F + V+N L+D Y K G + A+K+FE +
Sbjct: 154 VTACSRAGDLNLGRRIHSYMD--GVFGFSLPVANALLDMYTKNGYLEEAVKMFEQMP--E 209
Query: 151 KNLVSWTSIISGFAMHG-MGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
+N++SWT ++SG+ + G + K V ++ QK + + + S++NAC G EE L
Sbjct: 210 RNIISWTILVSGYGIAGQLDKARVFFYQCTQK-----DLILWTSMINACVQHGSFEEALI 264
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
F M + V PD L+ G L+Q E
Sbjct: 265 LFRDMQLQ-RVEPDKFTVVTLLTCCANIGALDQGE 298
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 183/310 (59%), Gaps = 6/310 (1%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
+I K G++E AR +F+ +P RN V WT +I GY + + A+ LFR M +
Sbjct: 272 LIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAAD 331
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
+ TI V A G + + IH Y E+ ++ N LI Y+KCG I AL++
Sbjct: 332 AA-TIACVLSACGHWGALAQGRWIHLYCERNSIE-MDLNARNALIGMYSKCGDIQKALEI 389
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFLSVLNACSHG 201
F ++ + ++ SW+++ISG AM+G +A+ F +M+ + ++PN +TFL VL AC+HG
Sbjct: 390 FHGLT--QPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHG 447
Query: 202 GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWR 261
G V++GL +F+ M + + P I+HYGC++D+LGRA L +AEK +P + +VV+WR
Sbjct: 448 GFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQ-PDVVIWR 506
Query: 262 TLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321
+LL AC HGN+E+ E ++I E+E G VL+ N+ A R+GD +R+R+ + +
Sbjct: 507 SLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYASASRWGDVKRVRKDMATQR 566
Query: 322 ALKFPGRSLV 331
K PG S V
Sbjct: 567 IKKQPGCSFV 576
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 143/312 (45%), Gaps = 12/312 (3%)
Query: 17 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVA 76
+V+ ++ L + ++R+LF ++ NV SW + Y+R + +AL+ M+
Sbjct: 61 VVSSKLLYYSLSHDHDFAFSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLR 120
Query: 77 CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136
T P + V A + + + IH K G + + V N LI ++ CG +
Sbjct: 121 -NGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVH-LDVFVQNALISAFSSCGAV 178
Query: 137 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF-ERMQKVVLKPNRVTFLSVL 195
+A +F+ + +++VSW S+ISG+ + A++ F E + L P+ VT +S L
Sbjct: 179 EAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSAL 238
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+ C GL++ G K VL D+ LIDM + G++E A KV IP
Sbjct: 239 SVCGRLGLLDLGKKIHGLFTGSGFVL-DVFVGSSLIDMYSKCGQIEDARKVFDRIPHR-- 295
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEME-RGYGGDYVLMYNILAGVWRYGDAERLR 314
N V W +++ + ++ + EM+ G+ D + +L+ +G + R
Sbjct: 296 NTVCWTSMIAG---YAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGR 352
Query: 315 --RVVDERNALK 324
+ ERN+++
Sbjct: 353 WIHLYCERNSIE 364
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 75/186 (40%), Gaps = 25/186 (13%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E +L N +I K G+++ A +F + ++ SW+ +I G S+ AL LF +
Sbjct: 364 EMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQ 423
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG---FNAFH--------IHV 122
M P+EIT L V C HG +G FNA I
Sbjct: 424 MEMISDIRPNEITFLGVL-----------CACNHGGFVDKGLYYFNAMTQIYNLTPGIEH 472
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
C++D + + A K + ++ ++V W S++ FA G + F Q
Sbjct: 473 YGCMVDLLGRANLLVEAEKFIRTLPIQ-PDVVIWRSLL--FACRNHGNIELAEFAAKQIE 529
Query: 183 VLKPNR 188
L+P R
Sbjct: 530 ELEPRR 535
>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Brachypodium distachyon]
Length = 614
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 185/305 (60%), Gaps = 14/305 (4%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM----VACEYTEPSE 84
K G ++ AR +F+ +P R+ VS T II GY ++ + AL LFR++ + C Y
Sbjct: 189 KSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNY----- 243
Query: 85 ITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFE 144
+T + ++ + + +HG ++ F I + N LID Y+KCG + + ++F+
Sbjct: 244 VTFTTLLTSLSGLASLNYGKQVHGLILRKEL-PFFIVLQNSLIDMYSKCGKLLYSRRVFD 302
Query: 145 DISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLV 204
++ +++ +SW +++ G+ HG+G+E V+ F M + V KP+ VT L+VL+ CSHGGLV
Sbjct: 303 NMP--QRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEEV-KPDSVTLLAVLSGCSHGGLV 359
Query: 205 EEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
+EGL FD +V+E + I HYGC+ID+LGR+G+L++A + +P E T +W +LL
Sbjct: 360 DEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPTP-AIWGSLL 418
Query: 265 GACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALK 324
GAC H NV +GE V +K+L+ME G G+YV++ NI A + D R+R+++ E K
Sbjct: 419 GACRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGMWKDVFRVRKLMLENTVTK 478
Query: 325 FPGRS 329
P +S
Sbjct: 479 EPAKS 483
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 153/318 (48%), Gaps = 40/318 (12%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV--ACEYT 80
+I V+ G L+ AR++ + MP RNVVSWT +I GY++ R AL LF RM+ C+
Sbjct: 82 LIILYVRCGALDDARNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKAN 141
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
E + T+L P + ++ + +H K F + H+ V + L+D Y K G I A
Sbjct: 142 EFTLATVLTSCPV---HQSIQQVEQVHSLVVKTNFES-HMFVGSSLLDMYGKSGNIQEAR 197
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS- 199
K+F D+ ER + VS T+IISG+A G+ EA++ F ++ ++ N VTF ++L + S
Sbjct: 198 KVF-DMLPER-DTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSG 255
Query: 200 ----------HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
HG ++ + L FF I LIDM + G+L + +V
Sbjct: 256 LASLNYGKQVHGLILRKELPFF------------IVLQNSLIDMYSKCGKLLYSRRVFDN 303
Query: 250 IPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGD 309
+P + + W +L HG +G+ V + M D V + +L+G G
Sbjct: 304 MPQR--SAISWNAMLMGYGRHG---IGQEVVQLFRTMTEEVKPDSVTLLAVLSGCSHGGL 358
Query: 310 AER----LRRVVDERNAL 323
+ +V E+NA+
Sbjct: 359 VDEGLDIFDLIVKEQNAV 376
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 72/162 (44%), Gaps = 4/162 (2%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
G L ELP +V N +I K G+L Y+R +F+ MP R+ +SW ++ GY R
Sbjct: 267 GLILRKELP-FFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIG 325
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
+ LFR M E +P +T+LAV G V I K HI
Sbjct: 326 QEVVQLFRTMT--EEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYG 383
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 166
C+ID + G + AL L E + E + W S++ +H
Sbjct: 384 CVIDLLGRSGQLQKALDLIEHMPFEPTPAI-WGSLLGACRVH 424
>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1092
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 109/318 (34%), Positives = 184/318 (57%), Gaps = 4/318 (1%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
++++V N ++ K G + A ++F+++P ++ +SW ++ GYT+ ++ A+ +
Sbjct: 356 DKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNM 415
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M C T P++ T +++ PA G ++ IH K + V+ CLID Y KC
Sbjct: 416 MEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSL-YLDVFVATCLIDLYGKC 474
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + A+ LF +I R V W +II+ +HG G+EA++ F+ M +K + +TF+S
Sbjct: 475 GRLEDAMSLFYEI--PRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVS 532
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L+ACSH GLV+EG K FD M +E + P +KHYGC++D+LGRAG LE+A ++ +P +
Sbjct: 533 LLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQ 592
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
+ +W LL AC +GN E+G + ++LE++ G YVL+ NI A ++ ++
Sbjct: 593 -PDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKV 651
Query: 314 RRVVDERNALKFPGRSLV 331
R + +R K PG S V
Sbjct: 652 RSLARDRGLRKTPGWSSV 669
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 161/306 (52%), Gaps = 9/306 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ ++ N +I K+G L+ A+ +F++M R++VSW II Y + N + AL F+
Sbjct: 254 DSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKG 313
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M P +T++++ Q D R + I G+ +R + + + N L++ YAK
Sbjct: 314 M-QLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKL 372
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFL 192
G + A +F+ + RK+ +SW ++++G+ +G+ EA++ + M++ PN+ T++
Sbjct: 373 GYMNCAHTVFDQL--PRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWV 430
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
S++ A SH G +++G+K K+++ L D+ CLID+ G+ GRLE A + IP
Sbjct: 431 SIIPAYSHVGALQQGMKIHAKLIKNSLYL-DVFVATCLIDLYGKCGRLEDAMSLFYEIPR 489
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312
+ + V W ++ + HG E ++ + +L ER D++ ++L+ G +
Sbjct: 490 DTS--VPWNAIIASLGIHGRGEEALQLFKDMLA-ER-VKADHITFVSLLSACSHSGLVDE 545
Query: 313 LRRVVD 318
++ D
Sbjct: 546 GQKCFD 551
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 122/243 (50%), Gaps = 6/243 (2%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
++G L+ A +F +MP ++V SW +I G+ + + GAL + RM E + IT+
Sbjct: 168 RYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKG-EGVKMDTITVA 226
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
++ P Q+ DV N LIH + K G ++ + VSN LI+ Y+K G + A +F+ + V
Sbjct: 227 SILPVCAQSDDVINGVLIHLHVLKHGLDS-DVFVSNALINMYSKFGRLQDAQMVFDQMEV 285
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
++LVSW SII+ + + A+ F+ MQ ++P+ +T +S+ + S
Sbjct: 286 --RDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISR 343
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
++ + D+ L++M + G + A V +P + T + W TL+ +
Sbjct: 344 SILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDT--ISWNTLVTGYT 401
Query: 269 FHG 271
+G
Sbjct: 402 QNG 404
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 122/257 (47%), Gaps = 14/257 (5%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+N+V +I V G++ +RS F+ + +N+ SW II Y R + + A+ +
Sbjct: 51 SQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQ 110
Query: 74 ---MVACEYTEPSEITILAVFPAIWQNG-DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDT 129
M + P T FP I + + + + +H K GF + V+ L+
Sbjct: 111 LFSMCGGGHLRPDFYT----FPPILKACVSLVDGKKVHCCVFKMGFED-DVFVAASLVHL 165
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
Y++ G + A K+F D+ V K++ SW ++ISGF +G A+ RM+ +K + +
Sbjct: 166 YSRYGVLDVAHKVFVDMPV--KDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTI 223
Query: 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
T S+L C+ V G+ V + + D+ LI+M + GRL+ A+ V
Sbjct: 224 TVASILPVCAQSDDVINGV-LIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQ 282
Query: 250 IPSEITNVVVWRTLLGA 266
+ E+ ++V W +++ A
Sbjct: 283 M--EVRDLVSWNSIIAA 297
>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 658
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/319 (34%), Positives = 186/319 (58%), Gaps = 5/319 (1%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFR- 72
E N+ ++ K+G + YA S+F MP +N VSW+ +I + + AL LF+
Sbjct: 215 EANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQL 274
Query: 73 RMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK 132
M+ + P+ +T++ V A + +LIHGY +RG ++ + V N LI Y +
Sbjct: 275 MMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSI-LPVLNALITMYGR 333
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
CG I ++F+++ + +++VSW S+IS + MHG GK+A++ FE M P+ ++F+
Sbjct: 334 CGEILMGQRVFDNM--KNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFI 391
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
+VL ACSH GLVEEG F+ M+ + + P ++HY C++D+LGRA RL++A K+ +
Sbjct: 392 TVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHF 451
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312
E VW +LLG+C H NVE+ ER + + E+E G+YVL+ +I A + +A+
Sbjct: 452 E-PGPTVWGSLLGSCRIHCNVELAERASTLLFELEPRNAGNYVLLADIYAEAKMWSEAKS 510
Query: 313 LRRVVDERNALKFPGRSLV 331
+ ++++ R K PG S +
Sbjct: 511 VMKLLEARGLQKLPGCSWI 529
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 136/310 (43%), Gaps = 44/310 (14%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FDE ER + WN + L G + L+ +M +W GI +R
Sbjct: 134 KVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQM------NWIGIPS-----DRFTY 182
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
L AC +E L+V P Q G + IH + + G+ A +IHV L
Sbjct: 183 TFVL----KACVVSE------LSVSP--LQKG-----KEIHAHILRHGYEA-NIHVMTTL 224
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK- 185
+D YAK G + A +F ++ KN VSW+++I+ FA + M +A+E F+ M
Sbjct: 225 LDVYAKFGSVSYANSVF--CAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDS 282
Query: 186 -PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEEC--EVLPDIKHYGCLIDMLGRAGRLEQ 242
PN VT ++VL AC+ +E+G ++ +LP + LI M GR G +
Sbjct: 283 VPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSILPVL---NALITMYGRCGEILM 339
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM-ERGYGGDYVLMYNIL 301
++V + + +VV W +L+ HG G++ + M +G Y+ +L
Sbjct: 340 GQRVFDNMKNR--DVVSWNSLISIYGMHG---FGKKAIQIFENMIHQGSSPSYISFITVL 394
Query: 302 AGVWRYGDAE 311
G E
Sbjct: 395 GACSHAGLVE 404
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 12/206 (5%)
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
G L ++ CE P++ T + + Q + + +H GF+ ++
Sbjct: 61 GNLKQAIHLLCCE-PNPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQ-DPFLATK 118
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
LI+ Y + G I A K+F++ + + W ++ AM G GKE ++ + +M + +
Sbjct: 119 LINMYYELGSIDRARKVFDE--TRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIP 176
Query: 186 PNRVTFLSVLNACSHGGL----VEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+R T+ VL AC L +++G + ++ +I L+D+ + G +
Sbjct: 177 SDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRH-GYEANIHVMTTLLDVYAKFGSVS 235
Query: 242 QAEKVASGIPSEITNVVVWRTLLGAC 267
A V +P++ N V W ++ AC
Sbjct: 236 YANSVFCAMPTK--NFVSWSAMI-AC 258
>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 734
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/318 (36%), Positives = 180/318 (56%), Gaps = 5/318 (1%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ N+ N +IT K ++ A +F+E+ R VSW +I G + S A+ LF R
Sbjct: 294 DSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTR 353
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M E +P T+++V PA+ D + IHGY + + ++V LID YAKC
Sbjct: 354 M-QLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQ-DVYVLTALIDMYAKC 411
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + A LF S +++++W ++I G+ HG GK AVE FE M+ + + PN TFLS
Sbjct: 412 GRVNIARILFN--SARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLS 469
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VL+ACSH GLV+EG ++F M E+ + P ++HYG ++D+LGRAG+L++A +P +
Sbjct: 470 VLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMD 529
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
+ V+ +LGAC H NVE+ E +KI E+ G +VL+ NI A + D R+
Sbjct: 530 -PGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARV 588
Query: 314 RRVVDERNALKFPGRSLV 331
R +++ K PG S++
Sbjct: 589 RTAMEKNGLQKTPGWSII 606
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 129/253 (50%), Gaps = 11/253 (4%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
++ K G++ AR +F+ MP +N VSW +IDGY + S ALALF RMV E
Sbjct: 200 TAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVE-EGV 258
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+ +++++LA A + G + +H + G ++ ++ V N LI Y+KC + A
Sbjct: 259 DVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDS-NVSVMNALITMYSKCKRVDLAS 317
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
+F+++ +R+ VSW ++I G A +G ++AV F RMQ +KP+ T +SV+ A +
Sbjct: 318 HVFDEL--DRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALAD 375
Query: 201 GGLVEEGL--KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
+ + L ++ + D+ LIDM + GR+ A + + + +V+
Sbjct: 376 ---ISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNS--ARERHVI 430
Query: 259 VWRTLLGACSFHG 271
W ++ HG
Sbjct: 431 TWNAMIHGYGSHG 443
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 125/251 (49%), Gaps = 7/251 (2%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW 95
AR +F+ MP R+ V+W ++ GY R + A+ + RM E P IT+++V PA
Sbjct: 113 ARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACA 172
Query: 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 155
+ C+ H + + G ++V+ ++D Y KCG I +A +F+ + KN VS
Sbjct: 173 NARALAACREAHAFAIRSGLEEL-VNVATAILDAYCKCGDIRAARVVFDWMPT--KNSVS 229
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215
W ++I G+A +G +EA+ F RM + + V+ L+ L AC G ++EG++ + +V
Sbjct: 230 WNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLV 289
Query: 216 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEM 275
+ ++ LI M + R++ A V + V W ++ C+ +G E
Sbjct: 290 -RIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQ--VSWNAMILGCAQNGCSED 346
Query: 276 GERV-TRKILE 285
R+ TR LE
Sbjct: 347 AVRLFTRMQLE 357
>gi|347954488|gb|AEP33744.1| chloroplast biogenesis 19, partial [Aethionema grandiflorum]
Length = 413
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/325 (36%), Positives = 186/325 (57%), Gaps = 6/325 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
+FD + ++N VTWN MI ++ G+++ A LF+EMP +++SWT +I+G+ + A
Sbjct: 77 VFDYMEDKNSVTWNTMIDAYMRSGKVDRAVKLFDEMPDPDLISWTAMINGFVKKGFHEEA 136
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L FR M +P + I+A A G + +H Y + F ++ V+N LI
Sbjct: 137 LVWFREM-QISGVKPDYVAIIAALAACTNLGALSFGLWVHRYVLSQDFKN-NVRVNNSLI 194
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y +CGC+ A ++F+ + E++ +VSW S+I G A +G E++ F +MQ+ P+
Sbjct: 195 DLYCRCGCVEFAREVFDKM--EKRTVVSWNSVIVGSAANGNAHESLVYFRKMQEEGFNPD 252
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
VTF L ACSH GLVEEG+++F M + ++ P I+HYGCL+D+ RAGRLE A K+
Sbjct: 253 AVTFTGALTACSHVGLVEEGIQYFQTMKRDYKISPRIEHYGCLVDLYSRAGRLEDALKLV 312
Query: 248 SGIPSEITNVVVWRTLLGACSFHG-NVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ S N VV +LL AC HG N E+ ER+ + + EM +YV++ N+ A +
Sbjct: 313 QSM-SMKPNEVVIGSLLAACRTHGNNTELAERLMKHLSEMNVKGHSNYVILSNMYAADGK 371
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ A ++RR + K PG S +
Sbjct: 372 WEGAXKMRRKMKGLGLKKQPGFSSI 396
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 114/264 (43%), Gaps = 40/264 (15%)
Query: 81 EPSEITILAVFPAI--WQNGDVRNCQLIHGYGEKRGFNAFHIHVS--------------- 123
EP+ IT +A+ + G L+HGY K G + H+ V
Sbjct: 14 EPNHITFIALISGCGDFPTGSETLGDLLHGYACKLGLDRTHVMVGTAILGMYSKRCRFGK 73
Query: 124 ----------------NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 167
N +ID Y + G + A+KLF+++ +L+SWT++I+GF G
Sbjct: 74 ARCVFDYMEDKNSVTWNTMIDAYMRSGKVDRAVKLFDEMP--DPDLISWTAMINGFVKKG 131
Query: 168 MGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY 227
+EA+ F MQ +KP+ V ++ L AC++ G + GL + + V + +++
Sbjct: 132 FHEEALVWFREMQISGVKPDYVAIIAALAACTNLGALSFGL-WVHRYVLSQDFKNNVRVN 190
Query: 228 GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME 287
LID+ R G +E A +V + E VV W +++ + +GN RK+ E
Sbjct: 191 NSLIDLYCRCGCVEFAREVFDKM--EKRTVVSWNSVIVGSAANGNAHESLVYFRKM--QE 246
Query: 288 RGYGGDYVLMYNILAGVWRYGDAE 311
G+ D V L G E
Sbjct: 247 EGFNPDAVTFTGALTACSHVGLVE 270
>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840 [Vitis vinifera]
Length = 713
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 112/316 (35%), Positives = 186/316 (58%), Gaps = 5/316 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
+L N ++T K G+L + +F EM R++VSW+ II GY++ + A L M
Sbjct: 352 SLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWM- 410
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
E +P+E + +V A + + + +H Y G + V + LI+ Y KCG
Sbjct: 411 RMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAM-VLSALINMYCKCGS 469
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
I A ++F+ + E ++VSWT++I+G+A HG +E ++ FE++ +V L+P+ VTF+ VL
Sbjct: 470 IEEASRIFD--AAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVL 527
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+ACSH GLV+ G ++F+ M ++ ++ P +HYGC+ID+L RAGRL AE + +P
Sbjct: 528 SACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRD 587
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
+ VVW TLL AC HG+VE G R +IL++E G ++ + NI A ++ +A +R+
Sbjct: 588 D-VVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRK 646
Query: 316 VVDERNALKFPGRSLV 331
++ + +K PG S +
Sbjct: 647 LMKSKGVIKEPGWSWI 662
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 131/265 (49%), Gaps = 11/265 (4%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N + T K G+LEY +LFE+M R+VVSWT II +M + A+ F RM + +
Sbjct: 256 NTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVS 315
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P+E T AV + + +H G A + V N ++ YAKCG + S+
Sbjct: 316 -PNEYTFAAVISGCANLARIEWGEQLHALILHLGLAA-SLSVENSIMTMYAKCGQLTSSS 373
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
+F +++ R+++VSW++II+G++ G EA E M+ KP SVL+AC +
Sbjct: 374 VIFHEMT--RRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGN 431
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
++E G K V + LI+M + G +E+A ++ +E ++V W
Sbjct: 432 MAILEHG-KQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDA--AENDDIVSW 488
Query: 261 RTLLGACSFHGN----VEMGERVTR 281
++ + HG +++ E++ R
Sbjct: 489 TAMINGYAEHGYSREVIDLFEKIPR 513
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 129/269 (47%), Gaps = 20/269 (7%)
Query: 11 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALAL 70
+LPE N + LVK G L AR +F++M ++ +SWT +I GY N S+ AL L
Sbjct: 48 DLPESN-----KQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLL 102
Query: 71 FRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTY 130
F+ M + A N DV +L+HGY K G + V + L+D Y
Sbjct: 103 FKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGL-VNSVFVGSALLDMY 161
Query: 131 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVT 190
K G IF ++F ++ + +N+VSWT+II+G G KEA+ F M + ++ + T
Sbjct: 162 TKNGKIFEGRRVFHEMPM--RNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYT 219
Query: 191 FLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY--GCLIDMLGRAGRLEQAEKVAS 248
F L AC+ G + G + + +++ D+ + L M + G+LE +
Sbjct: 220 FAIALKACADSGALNYGREIHAQAMKKG---FDVSSFVANTLATMYNKCGKLEYGLTLFE 276
Query: 249 GIPSEITNVVVWRTLLGACSFHGNVEMGE 277
+ + +VV W T++ V+MG+
Sbjct: 277 KM--SMRDVVSWTTIITTL-----VQMGQ 298
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 131/272 (48%), Gaps = 42/272 (15%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+G ++F E+P RN+V+W +ITGLV+ G + A F EM R+ V + D YT
Sbjct: 169 EGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEM-WRSRVEY----DSYTF--- 220
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
A+AL A +G + + IH K+GF+ V+
Sbjct: 221 ---AIAL---------------------KACADSGALNYGREIHAQAMKKGFDVSSF-VA 255
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N L Y KCG + L LFE +S+ +++VSWT+II+ G + AV+ F RM++
Sbjct: 256 NTLATMYNKCGKLEYGLTLFEKMSM--RDVVSWTTIITTLVQMGQEECAVQAFIRMRESD 313
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
+ PN TF +V++ C++ +E G + ++ + + ++ M + G+L
Sbjct: 314 VSPNEYTFAAVISGCANLARIEWGEQLH-ALILHLGLAASLSVENSIMTMYAKCGQLTS- 371
Query: 244 EKVASGIPSEIT--NVVVWRTLLGACSFHGNV 273
+S I E+T ++V W T++ S G+V
Sbjct: 372 ---SSVIFHEMTRRDIVSWSTIIAGYSQGGHV 400
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 6/175 (3%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E + + +I K G +E A +F+ ++VSWT +I+GY S + LF +
Sbjct: 451 EHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEK 510
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVR-NCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK 132
+ P +T + V A G V + + +K + H C+ID +
Sbjct: 511 IPRVGL-RPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHY-GCMIDLLCR 568
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
G + A + E + R ++V W++++ +HG + ER+ + L+PN
Sbjct: 569 AGRLSDAEHMIEAMPFHRDDVV-WSTLLRACRVHGDVERGRRTAERILQ--LEPN 620
>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
Length = 611
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/319 (34%), Positives = 180/319 (56%), Gaps = 5/319 (1%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCR-NVVSWTGIIDGYTRMNRSNGALALFR 72
+++V ++ K G+LE AR +F+ + + V W +I Y + R AL L+R
Sbjct: 168 HKDVVVGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYR 227
Query: 73 RMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK 132
M P + T + V + ++ + IH F+A ++ VSN L+ Y K
Sbjct: 228 SMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDA-NLLVSNALVHMYGK 286
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
CGC+ AL +F S++ K+ +SW +IIS +A HG +A+ ++ M +KP VTF+
Sbjct: 287 CGCLDEALDVFH--SMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFV 344
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
+L+ACSHGGLV +GL +F +M ++ + P + H+GC+ID+LGR GRL +AE V +P
Sbjct: 345 GLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPI 404
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312
+ N V W +LLGAC HG+++ G R ++++ G YVL+ NI A R+ D E+
Sbjct: 405 Q-ANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEK 463
Query: 313 LRRVVDERNALKFPGRSLV 331
+R+++ R K PG+S +
Sbjct: 464 IRKIMAARGVKKSPGKSWI 482
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 131/267 (49%), Gaps = 13/267 (4%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
N+V +I+ K G L+ AR+ FEE+ +N V+W ++ Y R AL LFR M
Sbjct: 65 NVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREM- 123
Query: 76 ACEYT---EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH--IHVSNCLIDTY 130
CE + P + + A D+ + IH + G H + V L++ Y
Sbjct: 124 -CERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREG-KELHKDVVVGTALLNMY 181
Query: 131 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRV 189
+KCG + A K+F+ I + + V W ++I+ +A HG GK+A++ + M L P +
Sbjct: 182 SKCGDLEEARKVFDSIRHD-ADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQG 240
Query: 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
TF++V++ C+ +++G + V ++ L+ M G+ G L++A V
Sbjct: 241 TFVTVIDVCAELSALKQG-RAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHS 299
Query: 250 IPSEITNVVVWRTLLGACSFHGNVEMG 276
+ ++ + + W T++ + ++HG+ +
Sbjct: 300 M--KLKDEISWNTIISSYAYHGHSDQA 324
>gi|449476598|ref|XP_004154781.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Cucumis sativus]
Length = 709
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/372 (31%), Positives = 189/372 (50%), Gaps = 45/372 (12%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLV--------------------------------- 28
+ + S +F E E++++TW MI G +
Sbjct: 336 IDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSA 395
Query: 29 ---------KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEY 79
K + Y+ +F + + V W ++ G + A+ LF+ M+ E
Sbjct: 396 CASLCYMYAKCNAVSYSFQVFAKTSKKRTVPWNALLSGLIHNELAREAVGLFKSML-IEE 454
Query: 80 TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSA 139
E + T +V PA D++ +H Y + GF + I V LID Y+KCG + A
Sbjct: 455 VEANHATFNSVIPAYAILADLKQVMNLHSYLVRSGFIS-KIAVITGLIDMYSKCGSLDYA 513
Query: 140 LKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS 199
K+F++I + K+++ W+ +I+G+ MHG G+ AV F +M ++PN +TF SVL+ACS
Sbjct: 514 HKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTSVLHACS 573
Query: 200 HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVV 259
H GLV++GL F M+E P HY C++D+LGRAGRL++A + +P + N +
Sbjct: 574 HRGLVDDGLTLFKYMIENYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSMPFQ-QNHSI 632
Query: 260 WRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319
W LLGAC H NVE+GE ++ E+E G+Y+L+ NI A V R+ DAE +R ++ +
Sbjct: 633 WGALLGACLIHQNVELGEVAAERLFELEPESTGNYILLANIYAAVGRWKDAENVRHIMSK 692
Query: 320 RNALKFPGRSLV 331
K P +S V
Sbjct: 693 IGLRKTPAQSSV 704
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 141/334 (42%), Gaps = 82/334 (24%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
N+ N ++ + G++ AR +F M R+VVSW +I G+ + R ALA+F M+
Sbjct: 218 NMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMM 277
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQL---IHGYGEKRGFNAFHIHVSNCLIDTYAK 132
EP TI++ P+ G ++ +L +H +K I V N L+D Y++
Sbjct: 278 DAR-VEPDSATIVSALPSC---GYLKELELGIKVHKLVQKNHLQE-KIEVRNALVDMYSR 332
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
CG I A +F + + K++++WTS+I+G+ M+G K A+ MQ + PN VT
Sbjct: 333 CGGIDEASLVFAE--TKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLA 390
Query: 193 SVLNACS--------------------------------------HGGLVEEGLKFFDKM 214
S+L+AC+ H L E + F M
Sbjct: 391 SLLSACASLCYMYAKCNAVSYSFQVFAKTSKKRTVPWNALLSGLIHNELAREAVGLFKSM 450
Query: 215 -VEECE--------------VLPDIKHY-------------------GCLIDMLGRAGRL 240
+EE E +L D+K LIDM + G L
Sbjct: 451 LIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSL 510
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
+ A K+ IP++ +++VW L+ HG+ E
Sbjct: 511 DYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGE 544
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 120/244 (49%), Gaps = 6/244 (2%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G + AR LF+++ ++ W II Y AL +F M+ P + T V
Sbjct: 131 GCVPLARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKFWPDKYTFPLV 190
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A + LIHG GF++ ++ V N L+ Y CG + A ++F + +
Sbjct: 191 IKACSVMSMLNVGVLIHGRALVSGFSS-NMFVQNSLLAMYMNCGKVGLARQVFN--VMLK 247
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
+++VSW ++ISG+ +G +EA+ F M ++P+ T +S L +C + +E G+K
Sbjct: 248 RSVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGYLKELELGIK- 306
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
K+V++ + I+ L+DM R G +++A V + ++ +V+ W +++ +
Sbjct: 307 VHKLVQKNHLQEKIEVRNALVDMYSRCGGIDEASLVFA--ETKEKDVITWTSMINGYIMN 364
Query: 271 GNVE 274
GN +
Sbjct: 365 GNAK 368
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 104 QLIHGYGEKRGF--NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 161
+++HG+ G + IH+ + L +YA CGC+ A KLF+D+S +L W +II
Sbjct: 99 KILHGHTITSGLLHSPNFIHLPSHLAVSYAFCGCVPLARKLFDDLS--DPSLFLWNAIIK 156
Query: 162 GFAMHGMGKEAVENFERMQ-KVVLKPNRVTFLSVLNACSHGGLVEEGL 208
+ G +A+ F+ M P++ TF V+ ACS ++ G+
Sbjct: 157 MYVDKGFHFDALRVFDSMICSGKFWPDKYTFPLVIKACSVMSMLNVGV 204
>gi|15226879|ref|NP_181048.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099187|sp|O64766.1|PP185_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g35030, mitochondrial; Flags: Precursor
gi|3033399|gb|AAC12843.1| hypothetical protein [Arabidopsis thaliana]
gi|209414526|gb|ACI46503.1| At2g35030 [Arabidopsis thaliana]
gi|330253957|gb|AEC09051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 627
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 189/330 (57%), Gaps = 2/330 (0%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + +LF +PER+ +WN MITG ++ E+ A LF+ MP +NV+SWT +I GY
Sbjct: 249 IDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVEN 308
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ AL +F +M+ +P+ T +++ A + Q IH K I
Sbjct: 309 KENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEI- 367
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V++ L++ Y+K G + +A K+F++ V +++L+SW S+I+ +A HG GKEA+E + +M+K
Sbjct: 368 VTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRK 427
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KP+ VT+L++L ACSH GLVE+G++FF +V + + +HY CL+D+ GRAGRL+
Sbjct: 428 HGFKPSAVTYLNLLFACSHAGLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCGRAGRLK 487
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+ + ++ + +L AC+ H V + + V +K+LE G YVLM NI
Sbjct: 488 DVTNFINCDDARLSR-SFYGAILSACNVHNEVSIAKEVVKKVLETGSDDAGTYVLMSNIY 546
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + +A +R + E+ K PG S V
Sbjct: 547 AANGKREEAAEMRMKMKEKGLKKQPGCSWV 576
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 141/267 (52%), Gaps = 14/267 (5%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFDE+PERN+V+WN M+ LV+ G ++ A +LFE MP R+VVSWT ++DG + NG
Sbjct: 161 ELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAK----NG 216
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
+ RR+ C E + I+ A+ QN + + +R F ++ N +
Sbjct: 217 KVDEARRLFDC-MPERNIISWNAMITGYAQNNRIDEADQLFQVMPERDFASW-----NTM 270
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLK 185
I + + + A LF+ + KN++SWT++I+G+ + +EA+ F +M + +K
Sbjct: 271 ITGFIRNREMNKACGLFDRMP--EKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVK 328
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN T++S+L+ACS + EG + + + +I L++M ++G L A K
Sbjct: 329 PNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIV-TSALLNMYSKSGELIAARK 387
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGN 272
+ +++ W +++ + HG+
Sbjct: 388 MFDNGLVCQRDLISWNSMIAVYAHHGH 414
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 133/279 (47%), Gaps = 61/279 (21%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR-NVVSWTGIIDGYTR 60
+ + KLFD LPER++VTW +ITG +K G++ AR LF+ + R NVV+WT ++ GY R
Sbjct: 62 IAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGYLR 121
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+ + A LF+ M E +++ W
Sbjct: 122 SKQLSIAEMLFQEM--------PERNVVS-----W------------------------- 143
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
N +ID YA+ G I AL+LF+++ +N+VSW S++ G EA+ FERM
Sbjct: 144 ---NTMIDGYAQSGRIDKALELFDEMP--ERNIVSWNSMVKALVQRGRIDEAMNLFERM- 197
Query: 181 KVVLKPNR--VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
P R V++ ++++ + G V+E + FD M E +I + +I +
Sbjct: 198 -----PRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPER-----NIISWNAMITGYAQNN 247
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGE 277
R+++A+++ +P + W T++ F N EM +
Sbjct: 248 RIDEADQLFQVMPER--DFASWNTMI--TGFIRNREMNK 282
>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 572
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/322 (36%), Positives = 188/322 (58%), Gaps = 13/322 (4%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
+L NV++ ++G+L ARSLF+ MP R+VVSWT +I G + A+ LF RM+
Sbjct: 129 DLYIQNVLLHMYSEFGDLLLARSLFDRMPHRDVVSWTSMIGGLVNHDLPVEAINLFERML 188
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH----VSNCLIDTYA 131
C E +E T+++V A +G + + +H E+ G IH VS L+D YA
Sbjct: 189 QCG-VEVNEATVISVLRACADSGALSMGRKVHANLEEWGIE---IHSKSNVSTALVDMYA 244
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191
K GCI SA K+F+D V +++ WT++ISG A HG+ K+A++ F M+ +KP+ T
Sbjct: 245 KGGCIASARKVFDD--VVHRDVFVWTAMISGLASHGLCKDAIDMFVDMESSGVKPDERTV 302
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
+VL AC + GL+ EG F + + P I+H+GCL+D+L RAGRL++AE + +P
Sbjct: 303 TAVLTACRNAGLIREGFMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAMP 362
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTR--KILEMERGYGGDYVLMYNILAGVWRYGD 309
E + V+WRTL+ AC HG+ + ER+ + +I +M G Y+L N+ A ++ +
Sbjct: 363 IE-PDTVLWRTLIWACKVHGDADRAERLMKHLEIQDMRADDSGSYILASNVYASTGKWCN 421
Query: 310 AERLRRVVDERNALKFPGRSLV 331
+R +++++ +K PG S +
Sbjct: 422 KAEVRELMNKKGLVKPPGTSRI 443
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 112/251 (44%), Gaps = 13/251 (5%)
Query: 25 TGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG---ALALFRRMVACEYTE 81
L +G+L YAR L P N + ++ +++ AL+LF M +
Sbjct: 37 AALSPFGDLNYARLLLSTNPTLNSYYYNTLLRAFSQTPLPTPPFHALSLFLSMP----SP 92
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
P T + ++ + +H K GF A +++ N L+ Y++ G + A
Sbjct: 93 PDNFTFPFLLKCCSRSKLPPLGKQLHALLTKLGF-APDLYIQNVLLHMYSEFGDLLLARS 151
Query: 142 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHG 201
LF+ + +++VSWTS+I G H + EA+ FERM + ++ N T +SVL AC+
Sbjct: 152 LFD--RMPHRDVVSWTSMIGGLVNHDLPVEAINLFERMLQCGVEVNEATVISVLRACADS 209
Query: 202 GLVEEGLKFFDKMVE-ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
G + G K + E E+ L+DM + G + A KV + +V VW
Sbjct: 210 GALSMGRKVHANLEEWGIEIHSKSNVSTALVDMYAKGGCIASARKVFDDVVHR--DVFVW 267
Query: 261 RTLLGACSFHG 271
++ + HG
Sbjct: 268 TAMISGLASHG 278
>gi|449523019|ref|XP_004168522.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17210-like [Cucumis sativus]
Length = 747
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/319 (33%), Positives = 189/319 (59%), Gaps = 6/319 (1%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E N + N +I K +E AR +F+ M ++VV+W+ +I G+ R + + A+++F++
Sbjct: 383 ESNELLLNSVIDAYAKCNLVELARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISVFKQ 442
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M E P+ ++I+ + A + ++R + HG +RG A + + +ID Y+KC
Sbjct: 443 M--NEEVIPNNVSIMNLMEACAVSAELRQSKWAHGIAVRRGL-ASEVAIGTSIIDMYSKC 499
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G I ++++ F I +KN+V W+++IS F ++G+ EA+ FE++++ KPN VT LS
Sbjct: 500 GDIEASIRAFNQI--PQKNVVCWSAMISAFRINGLAHEALMLFEKIKQNGTKPNAVTALS 557
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L+ACSHGGL+EEGL FF MV++ + P ++HY C++DML RAG+ +A ++ +P E
Sbjct: 558 LLSACSHGGLIEEGLSFFTSMVQKHGIEPGLEHYSCIVDMLSRAGKFNEALELIEKLPKE 617
Query: 254 I-TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312
+ +W TLL +C +GN+ +G ++L++E Y+L N+ A D+ +
Sbjct: 618 MEAGASIWGTLLSSCRSYGNISLGSGAASRVLQLEPLSSAGYMLASNLYANCGLMIDSAK 677
Query: 313 LRRVVDERNALKFPGRSLV 331
+RR+ E+ G SLV
Sbjct: 678 MRRLAKEKGVKVVAGYSLV 696
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 132/269 (49%), Gaps = 30/269 (11%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E +L N +I K + A F+E+P +N++SW ++ Y ALAL
Sbjct: 282 EDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSAYILNESHLEALALLGT 341
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
MV E E E+T+ V D C+ +HG ++G+ + + + N +ID YAKC
Sbjct: 342 MVR-EGAEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRKGYESNELLL-NSVIDAYAKC 399
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
+ A +F+ ++ +K++V+W+++I+GFA +G EA+ F++M + V+ PN V+ ++
Sbjct: 400 NLVELARMVFDGMN--KKDVVAWSTMIAGFARNGKPDEAISVFKQMNEEVI-PNNVSIMN 456
Query: 194 VLNAC-----------SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
++ AC +HG V GL ++ +IDM + G +E
Sbjct: 457 LMEACAVSAELRQSKWAHGIAVRRGLA------------SEVAIGTSIIDMYSKCGDIEA 504
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ + + IP + NVV W ++ A +G
Sbjct: 505 SIRAFNQIPQK--NVVCWSAMISAFRING 531
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 120/262 (45%), Gaps = 21/262 (8%)
Query: 32 ELEYARSLFEEMPCRN-VVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
+ +A LF EM RN VVSW+ +I G+ ++ +FR MV P +T+++V
Sbjct: 197 HMYFAYKLFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSV 256
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A D+ ++HG RG + V N LID Y+KC + SA K F++I
Sbjct: 257 LKACTNLKDISLGTMVHGLVIFRGLED-DLFVGNSLIDMYSKCFNVHSAFKAFKEI--PE 313
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK- 209
KN++SW ++S + ++ EA+ M + + + VT +VL H + LK
Sbjct: 314 KNIISWNLMLSAYILNESHLEALALLGTMVREGAEKDEVTLANVLQIAKH---FLDSLKC 370
Query: 210 ------FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTL 263
K E E+L + +ID + +E A V G+ + +VV W T+
Sbjct: 371 RSVHGVIIRKGYESNELLLN-----SVIDAYAKCNLVELARMVFDGMNKK--DVVAWSTM 423
Query: 264 LGACSFHGNVEMGERVTRKILE 285
+ + +G + V +++ E
Sbjct: 424 IAGFARNGKPDEAISVFKQMNE 445
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 139/306 (45%), Gaps = 28/306 (9%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA----LALFRRMVA 76
N I +K+G+L+ A+ F+ ++ VSW ++ G N SNG+ L F +
Sbjct: 86 NSTIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHG----NFSNGSIMAGLCWFIKGRF 141
Query: 77 CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136
+ +P+ ++L V A + HGY + GF+A + V N L+ YA+
Sbjct: 142 AHF-QPNISSLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAI-LSVQNSLLSLYAEVHMY 199
Query: 137 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFLSVL 195
F A KLF ++SV R ++VSW+ +I GF G ++ F M + + P+ VT +SVL
Sbjct: 200 F-AYKLFGEMSV-RNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVL 257
Query: 196 NACSH-----GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI 250
AC++ G + GL F + + D+ LIDM + + A K I
Sbjct: 258 KACTNLKDISLGTMVHGLVIFRGLED------DLFVGNSLIDMYSKCFNVHSAFKAFKEI 311
Query: 251 PSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDA 310
P + N++ W +L A + N E + + G D V + N+L + D+
Sbjct: 312 PEK--NIISWNLMLSA--YILNESHLEALALLGTMVREGAEKDEVTLANVLQIAKHFLDS 367
Query: 311 ERLRRV 316
+ R V
Sbjct: 368 LKCRSV 373
>gi|125595818|gb|EAZ35598.1| hypothetical protein OsJ_19887 [Oryza sativa Japonica Group]
Length = 495
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 180/317 (56%), Gaps = 28/317 (8%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCR-NVVSWTGIIDGYTRMNRSNGALALFRRM 74
++V WN ++ MP + NVVSW ++ + R ALALF+ M
Sbjct: 188 DVVAWNALVD---------------MRMPVKKNVVSWNTMMSAFARAGELEEALALFQEM 232
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
A P + T +A A Q G + + +H Y + G +A + V N L+D YAKCG
Sbjct: 233 QAAA-VRPDDATFVAALGACAQLGALDTGRWLHAYMGRMGHSADGV-VGNALLDMYAKCG 290
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
+ A ++F+ ++ R+++ ++TS+I G AMHG G++A+ F MQ+ + PN VT L V
Sbjct: 291 AVDQATEVFDGMA--RRDVYTYTSMILGLAMHGRGEDALSLFAGMQRAGVTPNEVTLLGV 348
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L AC H GLVEEGL+ + M E P I+HYGC++DMLGRAGRL++AE++ + +P
Sbjct: 349 LTACCHAGLVEEGLQQLNAMPE-----PRIEHYGCVVDMLGRAGRLDKAEELIAAMPVH- 402
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLR 314
++ ++W +LL AC HG+VE ERV R+ + GDYVLM N A R+G+A ++R
Sbjct: 403 SDALIWSSLLAACRAHGDVERAERVMRR--RVADADAGDYVLMSNTYASNGRHGEAVKVR 460
Query: 315 RVVDERNALKFPGRSLV 331
+ K PG SL+
Sbjct: 461 GQMRRNEIDKVPGCSLI 477
>gi|297793453|ref|XP_002864611.1| hypothetical protein ARALYDRAFT_496037 [Arabidopsis lyrata subsp.
lyrata]
gi|297310446|gb|EFH40870.1| hypothetical protein ARALYDRAFT_496037 [Arabidopsis lyrata subsp.
lyrata]
Length = 534
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/330 (35%), Positives = 188/330 (56%), Gaps = 15/330 (4%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D K+FDE+P+R+ V VMI + G ++ A LF+++ ++ V WT +IDG R
Sbjct: 174 LADAKKVFDEMPDRDQVVATVMINCYSECGCIKEALELFQDVKIKDTVCWTAMIDGLVRN 233
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
N AL LFR M + P+ I + W +G +H + E + +
Sbjct: 234 REMNKALELFREMQLSVFYLPARIWVR------WSSG-----AGVHSFVENQKMELSNF- 281
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LI+ Y++CG I A ++F+ + K+++S+ ++ISG AMHG EA+ F M
Sbjct: 282 VGNALINMYSRCGDINVAKRVFK--GMRDKDVISYNTMISGLAMHGASVEAINVFRDMVN 339
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+PN+VT +++LNACSHGGL++ GL+ F+ M V P I+HYGC++D+LGR GRLE
Sbjct: 340 RGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMWRVFSVEPQIEHYGCIVDLLGRVGRLE 399
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + + E ++++ LL AC HGN+E+GE++ +++ E E G YVL+ +I
Sbjct: 400 EAYRFIENMLIEPDHIMLG-ALLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSHIY 458
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ ++ +R + E K PG S +
Sbjct: 459 ASSGKWKESTEIRESMRESGIEKEPGCSTI 488
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 128/300 (42%), Gaps = 54/300 (18%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
++YA +F + NV +T +IDG+ RS ++L+ RM+ P I +V
Sbjct: 77 IDYAYDVFRYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHSSVL-PDNYVITSVLK 135
Query: 93 AIWQNGDVRNCQLIH------GYGEKR--GFNAFHIH----------------------V 122
A + C+ IH G+G R G I+ V
Sbjct: 136 AC----GLDECREIHSQVLKLGFGSSRSVGLKLMEIYGKSGELADAKKVFDEMPDRDQVV 191
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ-K 181
+ +I+ Y++CGCI AL+LF+D+ + K+ V WT++I G + +A+E F MQ
Sbjct: 192 ATVMINCYSECGCIKEALELFQDVKI--KDTVCWTAMIDGLVRNREMNKALELFREMQLS 249
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
V P R+ A H + + ++ + + LI+M R G +
Sbjct: 250 VFYLPARIWVRWSSGAGVHSFVENQKMELSNFV------------GNALINMYSRCGDIN 297
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A++V G+ + +V+ + T++ + HG V R ++ RG+ + V + +L
Sbjct: 298 VAKRVFKGMRDK--DVISYNTMISGLAMHGASVEAINVFRDMV--NRGFRPNQVTLVALL 353
>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 585
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 186/330 (56%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + K+FD + R+LV+WN MI G G++ AR +F+ R+ SW+ +I Y +
Sbjct: 132 VAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKG 191
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
S AL L+R M P I++++V A G + +H + E +
Sbjct: 192 RCSKEALELWREMRVAGVA-PDCISMVSVLSACSAMGALAIGAEVHRFVESNRVE-VDMK 249
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ L+D YAKCG I ++LK+F + V K++++W+S+I G A HG+G +A+ F M
Sbjct: 250 LGTALVDMYAKCGDIENSLKVFHAMPV--KDVLTWSSMIIGLANHGLGHDALSLFSEMIS 307
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
L+PN +TF+ VL AC+H GLV +G K+F M + V+P ++HYGC++D+LGRAG +E
Sbjct: 308 QGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVE 367
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++ + + + ++WRTLLGAC H NVE+ E K+ ++ G YVL+ NI
Sbjct: 368 EAMELIRSMTFK-PDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLADGHYVLLSNIY 426
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + +R+ + N + PGRS +
Sbjct: 427 AQANSWEGVAEMRKTIRRENIQRVPGRSSI 456
>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
Length = 865
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 106/328 (32%), Positives = 185/328 (56%), Gaps = 4/328 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ +F + E+++V+W MIT + G + AR F+ M +NV++W ++ Y +
Sbjct: 422 LQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQH 481
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
L ++ M++ + P +T + +F G + I G K G
Sbjct: 482 GAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGL-ILDTS 540
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V+N +I Y+KCG I A K+F+ ++V K++VSW ++I+G++ HGMGK+A+E F+ + K
Sbjct: 541 VANAVITMYSKCGRILEARKVFDFLNV--KDIVSWNAMITGYSQHGMGKQAIEIFDDILK 598
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KP+ +++++VL+ CSH GLV+EG +FD M + P ++H+ C++D+LGRAG L
Sbjct: 599 RGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLT 658
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A+ + +P + T VW LL AC HGN E+ E + + E++ G Y+LM I
Sbjct: 659 EAKDLIDEMPMKPT-AEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIY 717
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRS 329
A + D+ ++R+++ ++ K PG S
Sbjct: 718 ADAGKSDDSAQIRKLMRDKGIKKNPGYS 745
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 150/342 (43%), Gaps = 53/342 (15%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
S+LF + E + N M+ G VK +++A LF+ MP R+VVSW ++ ++ R
Sbjct: 192 ASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRV 251
Query: 65 NGALALF-------RRMVACEYTEPSEITILAVFPAI-WQNGDVRNCQLIHGYGEKRGFN 116
AL + R+ + YT S +T A ++ W G + Q+I R
Sbjct: 252 REALDMVVDMQSKGVRLDSTTYT--SSLTACARLSSLRW--GKQLHAQVI------RNLP 301
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
+V++ L++ YAKCGC A +F S+ +N V+WT +I+GF HG E+VE F
Sbjct: 302 CIDPYVASALVELYAKCGCFKEAKGVFN--SLHDRNNVAWTVLIAGFLQHGCFTESVELF 359
Query: 177 ERMQKVVLKPNRVTFLSVLNACS-----------HGGLVEEGL-------KFFDKMVEEC 218
+M+ ++ ++ ++++ C H ++ G M +C
Sbjct: 360 NQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKC 419
Query: 219 EVL------------PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
+ L DI + +I + G + +A + G+ ++ NV+ W +LGA
Sbjct: 420 DNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTK--NVITWNAMLGA 477
Query: 267 CSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
HG E G R+ +L E+ D+V + G G
Sbjct: 478 YIQHGAEEDGLRMYNVMLS-EKDVRPDWVTYVTLFKGCADLG 518
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 136/316 (43%), Gaps = 41/316 (12%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
L ++ N++T NVM+ G VK G L A LF MP R+V SW ++ GY + + +
Sbjct: 62 LLTDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLAS 121
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L F M + P+ T + G+ + G +K G + V+ L+
Sbjct: 122 LESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFG-SQDDSDVAAALV 180
Query: 128 DTYAKCGCIFSALKLFEDI-----------------------------SVERKNLVSWTS 158
D + +CG + A +LF I S+ +++VSW
Sbjct: 181 DMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNM 240
Query: 159 IISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEEC 218
++S + G +EA++ MQ ++ + T+ S L AC+ + G + +++
Sbjct: 241 MVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRN- 299
Query: 219 EVLPDIKHY--GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG----N 272
LP I Y L+++ + G ++A+ V + + N V W L+ HG +
Sbjct: 300 --LPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDR--NNVAWTVLIAGFLQHGCFTES 355
Query: 273 VEMGERVTRKILEMER 288
VE+ ++ +++ +++
Sbjct: 356 VELFNQMRAELMTLDQ 371
>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
Length = 734
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/318 (36%), Positives = 180/318 (56%), Gaps = 5/318 (1%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ N+ N +IT K ++ A +F+E+ R VSW +I G + S A+ LF R
Sbjct: 294 DSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTR 353
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M E +P T+++V PA+ D + IHGY + + ++V LID YAKC
Sbjct: 354 M-QLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQ-DVYVLTALIDMYAKC 411
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + A LF S +++++W ++I G+ HG GK AVE FE M+ + + PN TFLS
Sbjct: 412 GRVNIARILFN--SARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLS 469
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VL+ACSH GLV+EG ++F M E+ + P ++HYG ++D+LGRAG+L++A +P +
Sbjct: 470 VLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMD 529
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
+ V+ +LGAC H NVE+ E +KI E+ G +VL+ NI A + D R+
Sbjct: 530 -PGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARV 588
Query: 314 RRVVDERNALKFPGRSLV 331
R +++ K PG S++
Sbjct: 589 RTAMEKNGLQKTPGWSII 606
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 129/253 (50%), Gaps = 11/253 (4%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
++ K G++ AR +F+ MP +N VSW +IDGY + S ALALF RMV E
Sbjct: 200 TAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVE-EGV 258
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+ +++++LA A + G + +H + G ++ ++ V N LI Y+KC + A
Sbjct: 259 DVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDS-NVSVMNALITMYSKCKRVDLAS 317
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
+F+++ +R+ VSW ++I G A +G ++AV F RMQ +KP+ T +SV+ A +
Sbjct: 318 HVFDEL--DRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALAD 375
Query: 201 GGLVEEGL--KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
+ + L ++ + D+ LIDM + GR+ A + + + +V+
Sbjct: 376 ---ISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNS--ARERHVI 430
Query: 259 VWRTLLGACSFHG 271
W ++ HG
Sbjct: 431 TWNAMIHGYGSHG 443
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 125/251 (49%), Gaps = 7/251 (2%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW 95
AR +F+ MP R+ V+W ++ GY R + A+ + RM E P IT+++V PA
Sbjct: 113 ARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACA 172
Query: 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 155
+ C+ H + + G ++V+ ++D Y KCG I +A +F+ + KN VS
Sbjct: 173 NARALAACREAHAFAIRSGLEEL-VNVATAILDAYCKCGDIRAARVVFDWMPT--KNSVS 229
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215
W ++I G+A +G +EA+ F RM + + V+ L+ L AC G ++EG++ + +V
Sbjct: 230 WNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLV 289
Query: 216 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEM 275
+ ++ LI M + R++ A V + V W ++ C+ +G E
Sbjct: 290 -RIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQ--VSWNAMILGCAQNGCSED 346
Query: 276 GERV-TRKILE 285
R+ TR LE
Sbjct: 347 AVRLFTRMQLE 357
>gi|242045040|ref|XP_002460391.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
gi|241923768|gb|EER96912.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
Length = 573
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/332 (33%), Positives = 189/332 (56%), Gaps = 4/332 (1%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVK-WGELEYARSLFEEMPCRNVVSWTGIIDGYT 59
L ++FD + ++V WN ++ G + G+ + R F MP R+ VSW ++
Sbjct: 129 MLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDADLLRDFFARMPSRDSVSWNTVLSLCV 188
Query: 60 RMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
+ A+A+FR M+A + +P +T+++V AI G + H Y ++G
Sbjct: 189 VNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAQGLWAHAYVIRKGVEVEE 248
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+S+ LI+ Y+KCG + A+ +F+++ +R +L +W ++++GF +G A+ F RM
Sbjct: 249 -KLSSALINMYSKCGFLEGAVYVFDNVRGKR-SLDTWNAMLAGFTANGCSGRALALFTRM 306
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+ L PN++TF +LNACSHGGLVEEG++ F +M + PDI HYGC++D+ RAG
Sbjct: 307 ETTGLMPNKITFNCILNACSHGGLVEEGMRCFQRMSRVYGIEPDIAHYGCMVDLFCRAGM 366
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
E+AE++ +P E + + + LLGAC H N+E+G++ +++E YVL+ N
Sbjct: 367 FEKAEEIIQIMPME-PDASMLKALLGACRTHKNLELGKKAGHRLIEAAPNDHAGYVLLSN 425
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
I A +G ++R+++ +R LK PG S V
Sbjct: 426 IYALDGNWGRVHKVRKLMLDRGVLKTPGSSSV 457
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 12/179 (6%)
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL LF ++ +P + + D +H + KRGF A H V L
Sbjct: 62 ALRLFDHLLR-SGADPDPAAYELALASCARGKDRATAAQLHAHAAKRGFLASHRRVRCRL 120
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN-FERMQKVVLK 185
+ YA CG + A ++F+ + ++V+W ++ G+A G + + + F RM
Sbjct: 121 VHAYAVCGMLPHARRVFDGGT--DNDMVAWNCLLRGYAQEGGDADLLRDFFARM------ 172
Query: 186 PNR--VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
P+R V++ +VL+ C G +E + F +M+ E PD ++ + G L Q
Sbjct: 173 PSRDSVSWNTVLSLCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAQ 231
>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
Length = 602
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/327 (34%), Positives = 191/327 (58%), Gaps = 9/327 (2%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+ F E P +N+V WN MI V+ LE + LF+ MP R+VVSW +I G+ R+ +
Sbjct: 248 RFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQE 307
Query: 67 ALALFRRMVACEYT--EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
AL F M E++ P+ +T+L+ A +G + IH Y +K N + +
Sbjct: 308 ALTWFHEM---EFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNR-DGSLDS 363
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
LID Y+KCG I A+++FE+ + R++L +WTSI+ G AMHG G++A+ F +M++ +
Sbjct: 364 SLIDMYSKCGDIDKAVQIFEEST--RRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQV 421
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
+P+ VT + VL+AC+H GL+++G +F M + ++P ++HYG ++D+LGR G L++A
Sbjct: 422 QPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGXMVDLLGRMGCLKEAY 481
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
+ G+P E N ++W L AC H NVE+GE R++L + V++ N+ A
Sbjct: 482 DLIMGMPME-ANEIIWGAFLSACRVHNNVELGEVAARRLLGLXPRDPWARVMLSNMYAEE 540
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
++ + LR+ + ++ K PG S +
Sbjct: 541 AKWDRSMGLRKEIKKKGLKKSPGCSSI 567
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 137/312 (43%), Gaps = 40/312 (12%)
Query: 28 VKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITI 87
V G + R +F+EM +V WT II Y + AL LFR M T P + +
Sbjct: 137 VACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLT-PDMVAV 195
Query: 88 LAVFPAIWQNGDVRNCQLIHGYGEKRGF--NAFHIHVSNCLIDTYAKCGCIFSALKLFED 145
V A GD+ + +H + EK G +AF VS+ LI TY +CG + A + F++
Sbjct: 196 STVVSACGLLGDLGVAKAMHCFIEKSGIEVDAF---VSSTLISTYGECGSLDYAYRFFQE 252
Query: 146 I--------------SVERKNL---------------VSWTSIISGFAMHGMGKEAVENF 176
SVE NL VSW S+I GFA G +EA+ F
Sbjct: 253 TPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWF 312
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
M+ + PN +T LS L+AC+ G ++ G + V++ ++ D LIDM +
Sbjct: 313 HEMEFSGVSPNALTLLSTLSACASHGALDTG-AWIHAYVDKNDMNRDGSLDSSLIDMYSK 371
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
G +++A ++ S ++ W +++ + HG E K+ E + D V
Sbjct: 372 CGDIDKAVQIFE--ESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQ--VQPDDVT 427
Query: 297 MYNILAGVWRYG 308
M +L+ G
Sbjct: 428 MVGVLSACAHAG 439
>gi|297810935|ref|XP_002873351.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319188|gb|EFH49610.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1281
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 112/325 (34%), Positives = 189/325 (58%), Gaps = 3/325 (0%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
KLFDE+P +NLVTWN ++ K G++ AR +F+EM R+VV+W+ +IDGY + N
Sbjct: 910 KLFDEMPYKNLVTWNSILDSYAKSGDVVSARLVFDEMTMRDVVTWSSMIDGYVKSGEYNE 969
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL +F +M+ ++ +E+T+++V A G++ +++H Y + + L
Sbjct: 970 ALEIFDQMMRMGSSKANEVTMVSVLCACAHLGELNRGKVVHRYILDVHL-PLTVILQTSL 1028
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YAKCG I A +F SV++ + + W ++I G A HG +E++ F +M++ + P
Sbjct: 1029 IDMYAKCGSIGDAWGVFCGASVKKTDALMWNAMIGGLASHGFIRESLLLFHKMRESEIDP 1088
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +TFL +L ACSHGGLV+E FF + +E P +HY C++D+L RAG ++ A
Sbjct: 1089 DEITFLCLLAACSHGGLVKEAWHFFTSL-KESGAEPKSEHYACMVDVLSRAGLVKDAHDF 1147
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
S + + T V+ L C HGN+E+ E V +K++E++ G YV + N+ A +
Sbjct: 1148 ISEMLIKPTGSVLG-ALFNGCINHGNLELAETVGKKLIELQPHNDGRYVGLANVYAINKQ 1206
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+G A +R ++++ K G S++
Sbjct: 1207 FGAARSMREAMEKKGVKKIAGHSII 1231
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 5/184 (2%)
Query: 46 RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQL 105
R++VS+T I+G R + L LFR A + P I + A+ +
Sbjct: 577 RHMVSYTAAIEGLIRNEGVDRGLELFRDTCANGHC-PDVIAYHVLIKALCKACRTTEADN 635
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN--LVSWTSIISGF 163
+ +G + N +ID + K G I L + + KN ++++TS+I G
Sbjct: 636 LFNEMVSKGLKP-SVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGL 694
Query: 164 AMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD 223
EA+ + M+ PNR+TF++++ + G E L +F +M EE E+ PD
Sbjct: 695 CASRRPSEAISRWNEMKGKDCYPNRITFMALIQGLCNCGWSSEALVYFREM-EEKEMEPD 753
Query: 224 IKHY 227
Y
Sbjct: 754 SAVY 757
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 104/244 (42%), Gaps = 15/244 (6%)
Query: 31 GELEYARSLFEE-----MPCRNVVSWTGIIDGYTRMNRSNGAL--ALFRRMVACEYTEPS 83
G +E A S+F+ + N ++ +++ ++ N S+ L A + M C +
Sbjct: 155 GLVEEASSVFDRVREMGLCVPNAYTYNCLLEAISKSNSSSVELVEARLKEMRDCGF-HFD 213
Query: 84 EITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLF 143
+ T+ V NG + RG+ H+S L+ ++ K G + A +L
Sbjct: 214 KFTLTPVLQVYCNNGKSERALSVFNEILSRGW--LDEHISTILVVSFCKWGQVDKAFELI 271
Query: 144 EDISVE--RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA-CSH 200
E + R N ++ +I GF +A + FE+M+++ + P+ + ++ C H
Sbjct: 272 EMLEERHIRLNYKTFCVLIHGFVKESRIDKAFQLFEKMRRMGMNPDIALYDVLIGGLCKH 331
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
L E L + + ++ + PD G L+ L + KV G + ++++
Sbjct: 332 KDL-EMALSLYLE-IKRSGIPPDRGILGKLLCSFSEESELSRITKVIIGDIDTKSVMLLY 389
Query: 261 RTLL 264
++LL
Sbjct: 390 KSLL 393
>gi|224097410|ref|XP_002310922.1| predicted protein [Populus trichocarpa]
gi|222850742|gb|EEE88289.1| predicted protein [Populus trichocarpa]
Length = 554
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 191/338 (56%), Gaps = 12/338 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L K+FD++ ERN+V WN M+ G ++ G L+ AR +F EMP RNVVSWT +I GY +
Sbjct: 183 LASARKVFDDMSERNVVCWNSMLAGYMRRGNLDGARRIFYEMPERNVVSWTTMISGYAKN 242
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH-- 119
+ AL LF +M E ++ +LA A + GD++ IH Y + +
Sbjct: 243 GKCKQALNLFDQMRKAG-VELDQVVLLAALTACAELGDLKMGMWIHSYIQDTFVGSNQRV 301
Query: 120 -IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER 178
+ ++N LI YA CG I A ++F + ++ VSWTS+I+ FA G + +E F
Sbjct: 302 LVSLNNALIHMYASCGMIDEAYEVFR--WMPERSAVSWTSLITAFAKQGYAQAVLEIFRS 359
Query: 179 MQKV---VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
MQ++ +P+ +TF+ VL ACSH GLV+EG + F M++ + P I+HYGC++D+L
Sbjct: 360 MQRLGTSEARPDGITFIGVLCACSHAGLVDEGRQLFKDMIQRWGIKPRIEHYGCMVDLLS 419
Query: 236 RAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKIL-EMERGYGGDY 294
RAG L++A+++ + +P + N VW LLG C F+ N E+ V++K++ E + Y
Sbjct: 420 RAGFLDEAQELIATMPVKPNN-AVWGALLGGCRFYRNAELASLVSQKLVAEPDPDKAAGY 478
Query: 295 V-LMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ L+ + A ++ D +R+ + K G+S V
Sbjct: 479 LSLLAQVYASAEKWQDVATVRQKMVAMGVKKPAGQSWV 516
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 66/155 (42%), Gaps = 9/155 (5%)
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ SA +F+DI + + + W +I A ++++ F +M +P+ T+ +L
Sbjct: 76 LLSAHYVFKDI--QSPSTILWNQMIRAHARSQTPAKSIQFFNQMLLTDSRPDAHTYSFLL 133
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDML-----GRAGRLEQAEKVASGI 250
AC+ + EG + K++ ++ L++ G L A KV +
Sbjct: 134 AACTSSLSLREGQQVHSKVLTNGYYSSNVFLMSKLVNFYAAVVGGEGAALASARKVFDDM 193
Query: 251 PSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
NVV W ++L GN++ R+ ++ E
Sbjct: 194 SER--NVVCWNSMLAGYMRRGNLDGARRIFYEMPE 226
>gi|357155797|ref|XP_003577241.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Brachypodium distachyon]
Length = 519
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/337 (34%), Positives = 185/337 (54%), Gaps = 10/337 (2%)
Query: 2 LKDGSKLFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEM-----PCRNVVSWTGI 54
L LFDE+P+ R V++N +IT + ++ AR LF+EM R+VVSW +
Sbjct: 180 LPHARTLFDEMPQKIRCAVSYNTLITACFRTRDILAARRLFDEMQRHNRSRRSVVSWNAM 239
Query: 55 IDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG 114
I G R R + A+ F MV P + T+ A PA + G+ + H Y + G
Sbjct: 240 IAGCARCGRDDMAVRYFEDMVREGEVAPDDGTLAAALPACGRTGNAGAGRWAHEYAREAG 299
Query: 115 FNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVE 174
+HV N +ID Y KCG + SA ++FE + ++ +VSW ++ISGF+++G G E ++
Sbjct: 300 LLDGSVHVVNAVIDMYCKCGDVGSAREVFERM--RQRTVVSWNTMISGFSLNGQGVEGID 357
Query: 175 NFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDML 234
F M + P+ VTFL VL C+H G G + F M E + ++HYGC++D+L
Sbjct: 358 LFREMMRSGENPDAVTFLGVLGCCAHAGAANVGQEIFQSMQSEYGIEAGVEHYGCMVDVL 417
Query: 235 GRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY 294
GR+G LE+A + G+P N +W LL AC H + + E ++++++E G+Y
Sbjct: 418 GRSGLLEEAHALIQGMPMR-PNAAIWGALLSACRAHAGLSIAEVALKELIDLEPFNSGNY 476
Query: 295 VLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
VL+ N+ A R+ +A +R+++ +A K PG+S +
Sbjct: 477 VLLANLYAETGRWEEAGDVRKLMRRMSAKKAPGQSSI 513
>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 672
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 119/315 (37%), Positives = 183/315 (58%), Gaps = 4/315 (1%)
Query: 17 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVA 76
L N ++ K GE+ +R +F+ M +V SW +I Y + S A +LF MV
Sbjct: 233 LAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVK 292
Query: 77 CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136
+ +T+ AV A +G ++ + IH K ++ V ++D Y KCG +
Sbjct: 293 RGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELED-NLVVGTSIVDMYCKCGRV 351
Query: 137 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLN 196
A K F+ + +RKN+ SWT +++G+ MHG GKEA++ F M + +KPN +TF+SVL
Sbjct: 352 EMARKAFDRL--KRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLA 409
Query: 197 ACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256
ACSH GL++EG +F+KM E +V P I+HY C++D+LGRAG L++A + + + +
Sbjct: 410 ACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVK-PD 468
Query: 257 VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRV 316
+VW +LLGAC H NVE+GE RK+ +++ G YVL+ NI A R+ D ER+R +
Sbjct: 469 FIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAGRWDDVERMRIL 528
Query: 317 VDERNALKFPGRSLV 331
+ LK PG S+V
Sbjct: 529 MKNHGLLKTPGYSIV 543
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 154/305 (50%), Gaps = 21/305 (6%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
++ + +I K G L AR LF+E+P RNVVSWT +I GY + R+ A+ LF+ +
Sbjct: 120 DIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFL 179
Query: 76 ACEYTEPSEITIL-----AVFPAIWQNGDVRNC-----QLIHGYGEKRGFNAFHIHVSNC 125
+ T+ EI + +V + R C + +HG K+GF + V N
Sbjct: 180 LVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGC-LAVGNT 238
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVL 184
L+D YAKCG I + K+F+ +E ++ SW S+I+ +A +G+ EA F M ++ +
Sbjct: 239 LMDAYAKCGEISVSRKVFD--GMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEV 296
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
+ N VT +VL AC+H G ++ G D++V+ E+ ++ ++DM + GR+E A
Sbjct: 297 RYNAVTLSAVLLACAHSGALQIGKCIHDQVVKM-ELEDNLVVGTSIVDMYCKCGRVEMAR 355
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER-GYGGDYVLMYNILAG 303
K + + NV W ++ HG+ G+ + EM R G +Y+ ++LA
Sbjct: 356 KAFDRLKRK--NVKSWTVMVAGYGMHGH---GKEAMKVFYEMIRCGIKPNYITFVSVLAA 410
Query: 304 VWRYG 308
G
Sbjct: 411 CSHAG 415
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 113/263 (42%), Gaps = 51/263 (19%)
Query: 37 RSLF-EEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEY-----TEPSEITILAV 90
RS+F + + +V SW II + R S AL F M T P I +
Sbjct: 39 RSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSS 98
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
+ + + GYG I V++ LID Y+KCG + A KLF++I
Sbjct: 99 LYDLCAGKQIHQQAFVFGYGSD-------IFVASALIDMYSKCGYLNDARKLFDEIP--E 149
Query: 151 KNLVSWTSIISGFAMHGMGKEAV-----------ENFERMQKVVLKPNRVTFLSVLNACS 199
+N+VSWTS+ISG+ + +EAV +++ + V + + V V++AC+
Sbjct: 150 RNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACA 209
Query: 200 -----------HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
HG V++G E C + + L+D + G + + KV
Sbjct: 210 RVCVKSVTECVHGLAVKKGF-------EGCLAVGNT-----LMDAYAKCGEISVSRKVFD 257
Query: 249 GIPSEITNVVVWRTLLGACSFHG 271
G+ E T+V W +L+ + +G
Sbjct: 258 GM--EETDVCSWNSLIAVYAQNG 278
>gi|242084708|ref|XP_002442779.1| hypothetical protein SORBIDRAFT_08g002705 [Sorghum bicolor]
gi|241943472|gb|EES16617.1| hypothetical protein SORBIDRAFT_08g002705 [Sorghum bicolor]
Length = 560
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/316 (34%), Positives = 189/316 (59%), Gaps = 8/316 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+ ++ PERN+ WN I V+ G+L A +F +MP R+V+SW +I GY ++
Sbjct: 236 LQGAERVSQATPERNISWWNSEIMRNVRLGDLVEAARIFRDMPERDVISWNSLISGYAKL 295
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ AL +FR M + EP+E+T+++ A + G++ + IH Y + +G A +
Sbjct: 296 GMYSRALDVFRDMWKND-IEPTELTVVSALGACAEVGELELGRGIHDYLKSKGIEA-DGY 353
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N L+D YAKCG + A ++F+ +S+ K++ W ++I G ++HG +A++ F+ M
Sbjct: 354 VGNALVDMYAKCGNLKLARQVFDSMSI--KDVTCWNTMIVGLSVHGHSHDALKLFDLMN- 410
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++P+ VTFL VL ACSH GL+ EG +F M+E+ +++P +KHYGC+I+ML R G++
Sbjct: 411 --IEPDHVTFLGVLTACSHSGLLNEGRVYFKSMIEDYKIVPSMKHYGCIINMLCRYGKVH 468
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++ + +P + N V+W+ ++ AC HG+ ++ +R ++ E+ GD + + N
Sbjct: 469 EAYQMINDMPVK-ANSVLWKMVMAACRVHGHFDIADRAVHRMHELMPMDDGDVITVSNAY 527
Query: 302 AGVWRYGDAERLRRVV 317
A R+ D E LR V
Sbjct: 528 AEAERWDDVEHLRTKV 543
>gi|297741541|emb|CBI32673.3| unnamed protein product [Vitis vinifera]
Length = 819
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 184/330 (55%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + K F++ E N+V++ +I G +K + A +LF +MP RNVVSW +I GY++M
Sbjct: 443 INEAQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFRKMPERNVVSWNAMISGYSQM 502
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ A+ LF M+ E T P+E T A+ + + HG K F +
Sbjct: 503 GYNEEAVNLFVVMLR-EGTLPNERTFPCAISAVANIAALGMGRSFHGSAVKF-LGKFDVF 560
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N L+ YAKCG + +L +F ++ +KN+VSW ++I G+A HG G EA+ FE+MQ
Sbjct: 561 IGNSLVSFYAKCGSMEESLLVFN--TLPKKNIVSWNALICGYANHGRGMEAIYFFEKMQD 618
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
L+PN VT L +L AC+H GLV++G +F+K E L +H+ C++D+L R+GR +
Sbjct: 619 TGLRPNSVTLLGLLLACNHSGLVDKGYSYFNKARVEEPGLLTPEHHACMVDLLSRSGRFK 678
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AEK +P + + W+ LLG C H N+E+GE RKIL ++ YV++ N
Sbjct: 679 EAEKFLHELPF-VPGIGFWKALLGGCRIHSNMELGELAARKILALDPEDVSSYVMLSNAH 737
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ R+ +R+ + E+ PG S +
Sbjct: 738 SAAGRWQSVSMIRKEMREKRMKGVPGSSWI 767
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 115/262 (43%), Gaps = 34/262 (12%)
Query: 39 LFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNG 98
LF+E+P +VVS T I + R + A+ F RM+A +P++ + V P+
Sbjct: 348 LFDEVPNWDVVSATATIGCFARYHHHEEAIYFFSRMLALN-IKPNQFSFGTVIPSSTALQ 406
Query: 99 DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI------------ 146
D+ + + +H K G + ++ V + ++D YAK I A K FED
Sbjct: 407 DLNSGRQLHACAIKMGLES-NVFVGSAVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLI 465
Query: 147 -----------------SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
+ +N+VSW ++ISG++ G +EAV F M + PN
Sbjct: 466 RGYLKKERFDDALALFRKMPERNVVSWNAMISGYSQMGYNEEAVNLFVVMLREGTLPNER 525
Query: 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
TF ++A ++ + G F V+ D+ L+ + G +E++ V +
Sbjct: 526 TFPCAISAVANIAALGMGRSFHGSAVKFLGKF-DVFIGNSLVSFYAKCGSMEESLLVFNT 584
Query: 250 IPSEITNVVVWRTLLGACSFHG 271
+P + N+V W L+ + HG
Sbjct: 585 LPKK--NIVSWNALICGYANHG 604
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 84/203 (41%), Gaps = 38/203 (18%)
Query: 99 DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 158
++ Q IHG K G + + +Y+ ++ A KLF++ V ++VS T+
Sbjct: 309 QLKESQRIHGRAIKLGTTILEPDI----VCSYSASKALWDACKLFDE--VPNWDVVSATA 362
Query: 159 IISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS-----------HGGLVEEG 207
I FA + +EA+ F RM + +KPN+ +F +V+ + + H ++ G
Sbjct: 363 TIGCFARYHHHEEAIYFFSRMLALNIKPNQFSFGTVIPSSTALQDLNSGRQLHACAIKMG 422
Query: 208 LK-----------FFDKMVEECEVL--------PDIKHYGCLIDMLGRAGRLEQAEKVAS 248
L+ F+ K+ E P++ Y LI + R + A +
Sbjct: 423 LESNVFVGSAVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFR 482
Query: 249 GIPSEITNVVVWRTLLGACSFHG 271
+P NVV W ++ S G
Sbjct: 483 KMPER--NVVSWNAMISGYSQMG 503
>gi|326506208|dbj|BAJ86422.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 582
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/331 (32%), Positives = 183/331 (55%), Gaps = 3/331 (0%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L D K+FD PE +++ WN ++ G + + R F +MP R+ VSW +I
Sbjct: 125 MLFDARKVFDHGPEVDMIAWNCLLRGYAQGRDTGALREFFAQMPARDSVSWNTVIAWCVA 184
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
A+A+FR M+A +P +T+++V AI G + H Y ++
Sbjct: 185 NGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLGALAQGLWAHAYVCRKEIEVDE- 243
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+S+ LI+ Y+KCG I A+ +FE+ S +++ +W ++++GF G + A+E F RM+
Sbjct: 244 KLSSALINMYSKCGFIEGAVYVFEN-SCALRSVDTWNAMLAGFTASGCSERALELFTRME 302
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
PN++TF ++LNACSHGG VEEG+ +F++M + PDI HYGC++D+ RAG
Sbjct: 303 SSGFVPNKITFNTLLNACSHGGFVEEGIGYFERMTNSSSIEPDIAHYGCMVDLFCRAGLF 362
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+AE++ +P E + VW+ L+GAC + N E+G++ +++E YVL+ NI
Sbjct: 363 EKAEEMIQMMPME-PDAAVWKALVGACRTYSNFELGKKAGHRLIEAAPNDHAGYVLLSNI 421
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + ++R+++ K PG S +
Sbjct: 422 YALDGNWKGVYKVRKLMLNCGVQKVPGSSSI 452
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 99/243 (40%), Gaps = 70/243 (28%)
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFED-------------------- 145
+HG+ KRG A H V N LI Y+ CG +F A K+F+
Sbjct: 97 LHGHAAKRG-AASHRRVRNGLIHAYSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQGR 155
Query: 146 ---------ISVERKNLVSWTSIISGFAMHGMGKEAVENF-ERMQKVVLKPNRVTFLSVL 195
+ ++ VSW ++I+ +G +EAV F E + +P+RVT +SV+
Sbjct: 156 DTGALREFFAQMPARDSVSWNTVIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVI 215
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV--------- 246
+A ++ G + +GL + V E+ D K LI+M + G +E A V
Sbjct: 216 SAIAYLGALAQGL-WAHAYVCRKEIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRS 274
Query: 247 ------------ASGIPSE-------------ITNVVVWRTLLGACSFHGNVEMG----E 277
ASG + N + + TLL ACS G VE G E
Sbjct: 275 VDTWNAMLAGFTASGCSERALELFTRMESSGFVPNKITFNTLLNACSHGGFVEEGIGYFE 334
Query: 278 RVT 280
R+T
Sbjct: 335 RMT 337
>gi|356532565|ref|XP_003534842.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g50990-like [Glycine max]
Length = 569
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 187/316 (59%), Gaps = 8/316 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
+L + N++I LVK G+ + A+ +F +M R+VV+W +I GY R R AL++FRRM+
Sbjct: 133 DLFSMNLVIESLVKGGQCDIAKKVFGKMSVRDVVTWNSMIGGYVRNLRFFDALSIFRRML 192
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
+ + EP T +V A + G + N + +HG ++ +I +S LID YAKCG
Sbjct: 193 SAK-VEPDGFTFASVVTACARLGALGNAKWVHGLMVEKRVELNYI-LSAALIDMYAKCGR 250
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
I + ++FE+++ R ++ W ++ISG A+HG+ +A F RM+ + P+ +TF+ +L
Sbjct: 251 IDVSRQVFEEVA--RDHVSVWNAMISGLAIHGLAMDATLVFSRMEMEHVLPDSITFIGIL 308
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
ACSH GLVEEG K+F M + P ++HYG ++D+LGRAG +E+A V + E
Sbjct: 309 TACSHCGLVEEGRKYFGMMQNRFMIQPQLEHYGTMVDLLGRAGLMEEAYAVIKEMRME-P 367
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
++V+WR LL AC H E+GE I +E GD+VL+ N+ + + AER+RR
Sbjct: 368 DIVIWRALLSACRIHRKKELGEVAIANISRLE---SGDFVLLSNMYCSLNNWDGAERVRR 424
Query: 316 VVDERNALKFPGRSLV 331
++ R K G+S V
Sbjct: 425 MMKTRGVRKSRGKSWV 440
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 75/170 (44%), Gaps = 5/170 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E N + +I K G ++ +R +FEE+ +V W +I G + A +F R
Sbjct: 232 ELNYILSAALIDMYAKCGRIDVSRQVFEEVARDHVSVWNAMISGLAIHGLAMDATLVFSR 291
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M E+ P IT + + A G V + G + R + ++D +
Sbjct: 292 M-EMEHVLPDSITFIGILTACSHCGLVEEGRKYFGMMQNRFMIQPQLEHYGTMVDLLGRA 350
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMH---GMGKEAVENFERMQ 180
G + A + +++ +E ++V W +++S +H +G+ A+ N R++
Sbjct: 351 GLMEEAYAVIKEMRME-PDIVIWRALLSACRIHRKKELGEVAIANISRLE 399
>gi|242082435|ref|XP_002445986.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
gi|241942336|gb|EES15481.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
Length = 567
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/326 (35%), Positives = 179/326 (54%), Gaps = 5/326 (1%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ +KLF+ +PE+N+V MIT K G++E AR LF+ + ++V+SW +I GY
Sbjct: 191 EATKLFEAMPEKNVVACTAMITSYCKQGDVESARRLFDGIRAKDVISWNTMIAGYVHNGH 250
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
A+ L M E +P T++AV A +R + H K + I S
Sbjct: 251 GEEAMRLHAVMFR-EGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLES-GISFS 308
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N L+ Y+KCG + + +F I++ K++VSW +II+ +A HG ++ + F M+
Sbjct: 309 NALMTMYSKCGNVGESELVF--INLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEMTG 366
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
L P+ +TFLSVL+AC H G V+ LK FD M + + P +HY C++D+L RAG+LE+A
Sbjct: 367 LIPDDITFLSVLSACGHVGKVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKA 426
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
+P E VW +LLGAC HGNV++GE + +++ + G YV++ NI A
Sbjct: 427 SSYIKDMPLEAEK-NVWGSLLGACQMHGNVQLGELAAKMLVQSDSESSGPYVILSNIYAA 485
Query: 304 VWRYGDAERLRRVVDERNALKFPGRS 329
+G ++R + ER K PG S
Sbjct: 486 AGMWGQVNQVRGQMKERGVKKQPGYS 511
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/319 (27%), Positives = 155/319 (48%), Gaps = 21/319 (6%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L S F P+RN+ TWN M+ GL++ G + A LF EMP RNVVS+T ++DG R
Sbjct: 96 LDAASAYFAGAPKRNVATWNAMLAGLLRLGRADDADRLFGEMPKRNVVSYTTMVDGLARR 155
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGD-VRNCQLIHGYGEKRGFNAFHI 120
A +F M + + ++ A+ +NG V +L EK ++
Sbjct: 156 GEVARAREVFDAM-----PDRNLVSWAAMISGYVENGMFVEATKLFEAMPEK------NV 204
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+I +Y K G + SA +LF+ I K+++SW ++I+G+ +G G+EA+ M
Sbjct: 205 VACTAMITSYCKQGDVESARRLFDGIRA--KDVISWNTMIAGYVHNGHGEEAMRLHAVMF 262
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ +KP+ T ++VL ACS L+ +G K + + + I L+ M + G +
Sbjct: 263 REGVKPDHATLIAVLTACSALALLRQG-KSTHAIAIKAMLESGISFSNALMTMYSKCGNV 321
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME-RGYGGDYVLMYN 299
++E V + ++ ++V W T++ A + HG ++V EME G D + +
Sbjct: 322 GESELVFINLRTK--DIVSWNTIIAAYAQHGKY---QKVIALFHEMEMTGLIPDDITFLS 376
Query: 300 ILAGVWRYGDAERLRRVVD 318
+L+ G + ++ D
Sbjct: 377 VLSACGHVGKVDASLKLFD 395
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 122/271 (45%), Gaps = 24/271 (8%)
Query: 11 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALAL 70
L R L+ N I+ L + G++ AR +F+ MP R+VVSW ++ R R + L
Sbjct: 9 SLAARRLLRDNQRISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRHH--LPA 66
Query: 71 FRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTY 130
RR+ ++ ++ +GD+ KR + N ++
Sbjct: 67 ARRLFDEAMPSRDVVSWNSIIAGCLAHGDLDAASAYFAGAPKRNVATW-----NAMLAGL 121
Query: 131 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR-- 188
+ G A +LF ++ ++N+VS+T+++ G A G A E F+ M P+R
Sbjct: 122 LRLGRADDADRLFGEMP--KRNVVSYTTMVDGLARRGEVARAREVFDAM------PDRNL 173
Query: 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
V++ ++++ G+ E K F+ M E+ ++ +I + G +E A ++
Sbjct: 174 VSWAAMISGYVENGMFVEATKLFEAMPEK-----NVVACTAMITSYCKQGDVESARRLFD 228
Query: 249 GIPSEITNVVVWRTLLGACSFHGNVEMGERV 279
GI ++ +V+ W T++ +G+ E R+
Sbjct: 229 GIRAK--DVISWNTMIAGYVHNGHGEEAMRL 257
>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
mitochondrial [Vitis vinifera]
Length = 673
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 172/297 (57%), Gaps = 5/297 (1%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
+E AR F+ M +N+VSWT +I GY + A+ L + M+ YT P E+ + ++
Sbjct: 330 IEDARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRV-YTYPDELALASILS 388
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
+ +H Y + GF AF + ++N L+ Y+KCG I SA + F SV +
Sbjct: 389 SCGNLSATSEVVQVHAYVVENGFEAF-LSIANALVSAYSKCGSIGSAFQSFS--SVAEPD 445
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
++SWTS++ +A HG+ KE VE FE+M ++P++V FL VL+AC+HGG V EGL +F+
Sbjct: 446 IISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLSACAHGGFVLEGLHYFN 505
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
M+ +++PD +HY C+ID+LGRAG L++A + + +P E + + LGAC H N
Sbjct: 506 LMINVYQIMPDSEHYTCIIDLLGRAGFLDEAINLLTSMPVEPRSDTLG-AFLGACKVHRN 564
Query: 273 VEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
V + + K+ ME +Y LM N+ A V + D R+R+++ ER K PG S
Sbjct: 565 VGLARWASEKLFVMEPNEPANYSLMSNMYASVGHWFDVARVRKLMRERCDFKVPGCS 621
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 149/299 (49%), Gaps = 20/299 (6%)
Query: 1 FLKDGSKLFD---ELPERNLVTW-NVMITGLVKWGELEYARSLFEEMPCRNVVSWT---- 52
FL G +L +L NL++ N ++ VK E +F+EMP +NVVSW
Sbjct: 88 FLHGGKQLHAHVIKLGNCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVVSWNTLIC 147
Query: 53 GIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEK 112
G+++G + FR+MV E P+ IT+ + A + DV C+ +H + K
Sbjct: 148 GVVEGNCKFALVRLGFHYFRQMV-LEMMAPNCITLNGLLRASIELNDVGICRQLHCFILK 206
Query: 113 RGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEA 172
GF++ + V + L+D+YAK G + A F+++S ++LV W ++S +A++G+ +A
Sbjct: 207 SGFDS-NCFVGSALVDSYAKFGLVDEAQSAFDEVS--SRDLVLWNVMVSCYALNGVQGKA 263
Query: 173 VENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL-KFFDKMVEECEVLPDIKHYGCLI 231
F+ M+ +K + TF S++N+C G L GL K ++ D+ L+
Sbjct: 264 FGVFKLMRLEGVKGDNFTFTSMINSC--GVLGSCGLGKQVHGLIIRLSFDLDVLVASALV 321
Query: 232 DMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 290
DM + +E A K G+ + N+V W T++ HG+ G+ R + EM R Y
Sbjct: 322 DMYSKNENIEDARKAFDGMI--VKNIVSWTTMIVGYGQHGD---GKEAMRLLQEMIRVY 375
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 131/272 (48%), Gaps = 9/272 (3%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ N + ++ K+G ++ A+S F+E+ R++V W ++ Y A +F+
Sbjct: 210 DSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKL 269
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M E + T ++ + G + +HG + F+ + V++ L+D Y+K
Sbjct: 270 M-RLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFD-LDVLVASALVDMYSKN 327
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
I A K F+ + V KN+VSWT++I G+ HG GKEA+ + M +V P+ + S
Sbjct: 328 ENIEDARKAFDGMIV--KNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTYPDELALAS 385
Query: 194 VLNACSHGGLVEEGLKFFDKMVEE-CEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
+L++C + E ++ +VE E I + L+ + G + A + S +
Sbjct: 386 ILSSCGNLSATSEVVQVHAYVVENGFEAFLSIAN--ALVSAYSKCGSIGSAFQSFSSVAE 443
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKIL 284
+++ W +L+GA +FHG + G V K+L
Sbjct: 444 P--DIISWTSLMGAYAFHGLSKEGVEVFEKML 473
>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Cucumis sativus]
Length = 678
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 111/318 (34%), Positives = 183/318 (57%), Gaps = 6/318 (1%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ N+ + ++ +W + A+ +F + +NVVSW +I G+ R + LF +
Sbjct: 238 DMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQ 297
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M+ + EP+ T +VF A +G + + +H + K G ++ N LID YAK
Sbjct: 298 MLRQGF-EPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPI-AYIGNTLIDMYAKS 355
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G I A K+F + ++++VSW SIISG+A HG+G EA++ FE+M K ++PN +TFLS
Sbjct: 356 GSIKDAKKVFRRLV--KQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLS 413
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VL ACSH GL++EG +F+ ++++ ++ + H+ ++D+LGRAGRL +A K +P +
Sbjct: 414 VLTACSHSGLLDEGQYYFE-LMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIK 472
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313
T VW LLG+C H N+++G +I E++ G +VL+ NI A R DA ++
Sbjct: 473 PT-AAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKV 531
Query: 314 RRVVDERNALKFPGRSLV 331
R+++ E K P S V
Sbjct: 532 RKMMKESGVKKEPACSWV 549
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 143/258 (55%), Gaps = 7/258 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E +LV N ++ K G LE A+ LF++MP +++VSWT +I GY++ +++ ALALF +
Sbjct: 137 EDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPK 196
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M+ + +P+E T+ ++ A + + +H + K G++ ++HV + L+D YA+
Sbjct: 197 MLHLGF-QPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYD-MNVHVGSSLLDMYARW 254
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
+ A +F ++ KN+VSW ++I+G A G G+ + F +M + +P T+ S
Sbjct: 255 AHMREAKVIFNSLAA--KNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSS 312
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
V AC+ G +E+G K+ V + P LIDM ++G ++ A+KV + +
Sbjct: 313 VFTACASSGSLEQG-KWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQ 371
Query: 254 ITNVVVWRTLLGACSFHG 271
++V W +++ + HG
Sbjct: 372 --DIVSWNSIISGYAQHG 387
>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1182
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 121/335 (36%), Positives = 195/335 (58%), Gaps = 13/335 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D +FD +R+ +WN MI V G + A+ LF+EM R+VVSW+ II GY ++
Sbjct: 329 VEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQV 388
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL F +M+ E +P+E T+++ A + + IH Y + +
Sbjct: 389 GCFMEALDFFHKMLQSE-VKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIK-MNDR 446
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ LID YAKCG I SA +F + V+RK + W ++I GFAMHG +EA+ FE+M+
Sbjct: 447 LLASLIDMYAKCGEIDSASSVFHEHKVKRK-VWPWNAMIGGFAMHGKPEEAINVFEKMKV 505
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ PN+VTF+++LNACSHG +V+EG +F+ M + + P+I+HYGC++D+L R+G L+
Sbjct: 506 EKVSPNKVTFIALLNACSHGYMVKEGKSYFELMASDYGINPEIEHYGCMVDLLSRSGHLK 565
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+E++ +P +V +W LL AC + ++E G R+ R I E++ + G VL+ NI
Sbjct: 566 DSEEMILSMPMA-PDVAIWGALLNACRIYKDMERGYRIGRIIKEIDPNHIGCNVLLGNIY 624
Query: 302 AGVWRYGDAERLRRVVDERNAL-----KFPGRSLV 331
+ R+ +A R+V E+N + K PG S +
Sbjct: 625 STSGRWNEA----RMVREKNEINSDRKKIPGFSSI 655
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 19/175 (10%)
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK-----PNRVTFLS 193
A KLF+ I + +L + ++I H M + + + + +++ PNR +F+
Sbjct: 229 AHKLFDQIP--QPDLFIYNTMIKS---HSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVF 283
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
AC +G V EG + F V + + ++ LI M G+ GR+E A V
Sbjct: 284 AFGACGNGMCVREGEQVFTHAV-KVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDR 342
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
+ W T++GA GN+ + + + ++ E D V I+AG + G
Sbjct: 343 --DFYSWNTMIGAYVGSGNMVLAKELFDEMHER------DVVSWSTIIAGYVQVG 389
>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
[Vitis vinifera]
gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/325 (36%), Positives = 187/325 (57%), Gaps = 14/325 (4%)
Query: 14 ERNLVTWNVMI-TGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGAL 68
E V W+V + + LV K G + A +F EMP RN+VSW +I GY + NR AL
Sbjct: 232 ESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEAL 291
Query: 69 ALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGE--KRGFNAFHIHVSNCL 126
+F+ M+ E EP++ T+ + A Q G + + +H Y + K G N+ + L
Sbjct: 292 KVFQEMII-EGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNS---KLGTAL 347
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+D Y+KCGC+ AL +FE + K++ WT++I+G AM G ++ F +M + ++P
Sbjct: 348 VDMYSKCGCVDEALLVFEKLPA--KDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQP 405
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N VTFL VL+AC+HGGLV+EGL+ F M+ + + P++ HYGC++D+LGRAGRLE+A K
Sbjct: 406 NGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKF 465
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P E T VW L C H E+GE + +++++ + G Y+L+ N+ + +
Sbjct: 466 IESMPMEPTP-GVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQK 524
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ A +RR++ + K P S +
Sbjct: 525 WEAAANVRRLMKGKGVDKSPACSWI 549
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 137/252 (54%), Gaps = 6/252 (2%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +++ G ++ +R LF E ++VVSWT +I+G R R+ AL F M +
Sbjct: 142 NSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRS-SGV 200
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
E E+T+++V A DV + +HG+ + G + ++V + L+D Y+KCG A+
Sbjct: 201 EVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAV 260
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
K+F ++ +NLVSW ++I+G+ KEA++ F+ M ++PN+ T S L AC+
Sbjct: 261 KVFNEMPT--RNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQ 318
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
G +++G ++ + V+ ++ + K L+DM + G +++A V +P++ +V W
Sbjct: 319 LGSLDQG-RWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAK--DVYPW 375
Query: 261 RTLLGACSFHGN 272
++ + G+
Sbjct: 376 TAMINGLAMRGD 387
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 110/239 (46%), Gaps = 17/239 (7%)
Query: 32 ELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM-----VACEYTEPSEIT 86
+L Y LF+ + + W I+ ++ ++ L + R+ + +T P
Sbjct: 53 DLGYTLLLFDRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFP---L 109
Query: 87 ILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI 146
+L F + + I +G F+AF V N L+ +A CG + + +LF I
Sbjct: 110 LLKAFSKLRNENPFQFYAHIVKFGLD--FDAF---VQNSLVSAFAHCGYVDCSRRLF--I 162
Query: 147 SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEE 206
+K++VSWT++I+G +G EA+E F M+ ++ + VT +SVL A + V
Sbjct: 163 ETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWF 222
Query: 207 GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
G VE V+ D+ L+DM + G + A KV + +P+ N+V W L+
Sbjct: 223 GRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTR--NLVSWGALIA 279
>gi|449444600|ref|XP_004140062.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17210-like [Cucumis sativus]
Length = 747
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/319 (33%), Positives = 189/319 (59%), Gaps = 6/319 (1%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E N + N +I K +E AR +F+ M ++VV+W+ +I G+ R + + A+++F++
Sbjct: 383 ESNELLLNSVIDAYAKCNLVELARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISVFKQ 442
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M E P+ ++I+ + A + ++R + HG +RG A + + +ID Y+KC
Sbjct: 443 M--NEEVIPNNVSIMNLMEACAVSAELRQSKWAHGIAVRRGL-ASEVDIGTSIIDMYSKC 499
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G I ++++ F I +KN+V W+++IS F ++G+ EA+ FE++++ KPN VT LS
Sbjct: 500 GDIEASIRAFNQI--PQKNVVCWSAMISAFRINGLAHEALMLFEKIKQNGTKPNAVTALS 557
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L+ACSHGGL+EEGL FF MV++ + P ++HY C++DML RAG+ +A ++ +P E
Sbjct: 558 LLSACSHGGLMEEGLSFFTSMVQKHGIEPGLEHYSCIVDMLSRAGKFNEALELIEKLPKE 617
Query: 254 I-TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312
+ +W TLL +C +GN+ +G ++L++E Y+L N+ A D+ +
Sbjct: 618 MEAGASIWGTLLSSCRSYGNISLGSGAASRVLQLEPLSSAGYMLASNLYANCGLMIDSAK 677
Query: 313 LRRVVDERNALKFPGRSLV 331
+RR+ E+ G SLV
Sbjct: 678 MRRLAKEKGVKVVAGYSLV 696
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 133/269 (49%), Gaps = 30/269 (11%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E +L N +I K + A F+E+P +N++SW ++ Y ALAL
Sbjct: 282 EDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSAYILNESHLEALALLGT 341
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
MV E E E+T+ V D C+ +HG ++G+ + + + N +ID YAKC
Sbjct: 342 MVR-EGAEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRKGYESNEL-LLNSVIDAYAKC 399
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
+ A +F+ ++ +K++V+W+++I+GFA +G EA+ F++M + V+ PN V+ ++
Sbjct: 400 NLVELARMVFDGMN--KKDVVAWSTMIAGFARNGKPDEAISVFKQMNEEVI-PNNVSIMN 456
Query: 194 VLNAC-----------SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
++ AC +HG V GL E ++ I IDM + G +E
Sbjct: 457 LMEACAVSAELRQSKWAHGIAVRRGL------ASEVDIGTSI------IDMYSKCGDIEA 504
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHG 271
+ + + IP + NVV W ++ A +G
Sbjct: 505 SIRAFNQIPQK--NVVCWSAMISAFRING 531
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 120/262 (45%), Gaps = 21/262 (8%)
Query: 32 ELEYARSLFEEMPCRN-VVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
+ +A LF EM RN VVSW+ +I G+ ++ +FR MV P +T+++V
Sbjct: 197 HMYFAHKLFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSV 256
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A D+ ++HG RG + V N LID Y+KC + SA K F++I
Sbjct: 257 LKACTNLKDISLGTMVHGLVIFRGLED-DLFVGNSLIDMYSKCFNVHSAFKAFKEI--PE 313
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK- 209
KN++SW ++S + ++ EA+ M + + + VT +VL H + LK
Sbjct: 314 KNIISWNLMLSAYILNESHLEALALLGTMVREGAEKDEVTLANVLQIAKH---FLDSLKC 370
Query: 210 ------FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTL 263
K E E+L + +ID + +E A V G+ + +VV W T+
Sbjct: 371 RSVHGVIIRKGYESNELLLN-----SVIDAYAKCNLVELARMVFDGMNKK--DVVAWSTM 423
Query: 264 LGACSFHGNVEMGERVTRKILE 285
+ + +G + V +++ E
Sbjct: 424 IAGFARNGKPDEAISVFKQMNE 445
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 139/306 (45%), Gaps = 28/306 (9%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA----LALFRRMVA 76
N I +K+G+L+ A+ F+ ++ VSW ++ G N SNG+ L F +
Sbjct: 86 NSTIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHG----NFSNGSIMAGLCWFIKGRF 141
Query: 77 CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136
+ +P+ ++L V A + HGY + GF+A + V N L+ YA+
Sbjct: 142 AHF-QPNISSLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAI-LSVQNSLLSLYAEVHMY 199
Query: 137 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFLSVL 195
F A KLF ++SV R ++VSW+ +I GF G ++ F M + + P+ VT +SVL
Sbjct: 200 F-AHKLFGEMSV-RNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVL 257
Query: 196 NACSH-----GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI 250
AC++ G + GL F + + D+ LIDM + + A K I
Sbjct: 258 KACTNLKDISLGTMVHGLVIFRGLED------DLFVGNSLIDMYSKCFNVHSAFKAFKEI 311
Query: 251 PSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDA 310
P + N++ W +L A + N E + + G D V + N+L + D+
Sbjct: 312 PEK--NIISWNLMLSA--YILNESHLEALALLGTMVREGAEKDEVTLANVLQIAKHFLDS 367
Query: 311 ERLRRV 316
+ R V
Sbjct: 368 LKCRSV 373
>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 889
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/328 (32%), Positives = 186/328 (56%), Gaps = 4/328 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L++ +F + ER++V+W M+T + G + AR F+ M RNV++W ++ Y +
Sbjct: 446 LQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQH 505
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
L ++ M+ + P +T + +F G + I G+ K G
Sbjct: 506 GAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGL-ILDTS 564
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N +I Y+KCG I A K+F+ +S RK+LVSW ++I+G++ HGMGK+A+E F+ M K
Sbjct: 565 VMNAVITMYSKCGRISEARKIFDFLS--RKDLVSWNAMITGYSQHGMGKQAIEIFDDMLK 622
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KP+ +++++VL++CSH GLV+EG +FD + + V P ++H+ C++D+L RAG L
Sbjct: 623 KGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLI 682
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A+ + +P + T VW LL AC HGN E+ E + + +++ G Y+L+ I
Sbjct: 683 EAKNLIDEMPMKPT-AEVWGALLSACKTHGNNELAELAAKHLFDLDSPDSGGYMLLAKIY 741
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRS 329
A + D+ ++R+++ ++ K PG S
Sbjct: 742 ADAGKSVDSAQVRKLMRDKGIKKNPGYS 769
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 145/315 (46%), Gaps = 30/315 (9%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
SK F ++ + N M+ G K +++A LFE MP R+VVSW ++ ++ R+
Sbjct: 216 ASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRA 275
Query: 65 NGALALF-------RRMVACEYTEPSEITILAVFPAI-WQNGDVRNCQLIHGYGEKRGFN 116
AL++ R+ + YT S +T A ++ W G + Q+I R
Sbjct: 276 REALSVAVDMHNRGVRLDSTTYT--SSLTACAKLSSLGW--GKQLHAQVI------RSLP 325
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
+V++ +++ YAKCGC A ++F S+ +N VSWT +I GF +G E++E F
Sbjct: 326 CIDPYVASAMVELYAKCGCFKEARRVFS--SLRDRNTVSWTVLIGGFLQYGCFSESLELF 383
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
+M+ ++ ++ ++++ CS+ + + ++ + LI M +
Sbjct: 384 NQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVIS-NSLISMYAK 442
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
G L+ AE + S + E ++V W +L A S GN+ K E G V+
Sbjct: 443 CGNLQNAESIFSSM--EERDIVSWTGMLTAYSQVGNIG-------KAREFFDGMSTRNVI 493
Query: 297 MYNILAGVWRYGDAE 311
+N + G + AE
Sbjct: 494 TWNAMLGAYIQHGAE 508
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 143/343 (41%), Gaps = 80/343 (23%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
K+ ++F L +RN V+W V+I G +++G F E
Sbjct: 345 FKEARRVFSSLRDRNTVSWTVLIGGFLQYG-------CFSE------------------- 378
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+L LF +M A E + + + D+ + +H K G + +
Sbjct: 379 -----SLELFNQMRA-ELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSG-HTRAVV 431
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+SN LI YAKCG + +A +F S+E +++VSWT +++ ++ G +A E F+ M
Sbjct: 432 ISNSLISMYAKCGNLQNAESIFS--SMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMS- 488
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY-----GC------- 229
N +T+ ++L A G E+GLK + M+ E +V+PD Y GC
Sbjct: 489 ---TRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANK 545
Query: 230 -----------------------LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
+I M + GR+ +A K+ + + ++V W ++
Sbjct: 546 LGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRK--DLVSWNAMITG 603
Query: 267 CSFHGNVEMGERVTRKILEM-ERGYGGDYVLMYNILAGVWRYG 308
S HG MG++ +M ++G DY+ +L+ G
Sbjct: 604 YSQHG---MGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSG 643
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 117/286 (40%), Gaps = 37/286 (12%)
Query: 11 ELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALAL 70
++ E N++T N+M+ G K G L A LF MP R+V SW ++ GY + R A+
Sbjct: 89 DITEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMES 148
Query: 71 FRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTY 130
F M + P+ T + G + G K GF V+ ++D +
Sbjct: 149 FVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQG-DPDVATGIVDMF 207
Query: 131 AKCGCIFSALKLFEDI-----------------------------SVERKNLVSWTSIIS 161
+CG + A K F I S+ +++VSW ++S
Sbjct: 208 VRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVS 267
Query: 162 GFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVL 221
+ G +EA+ M ++ + T+ S L AC+ + G + +++ L
Sbjct: 268 ALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRS---L 324
Query: 222 PDIKHY--GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
P I Y ++++ + G ++A +V S + N V W L+G
Sbjct: 325 PCIDPYVASAMVELYAKCGCFKEARRVFSSLRDR--NTVSWTVLIG 368
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 194/330 (58%), Gaps = 6/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D ++F+E+PE ++V VMI+ G +E A ++F + ++ V WT +IDG+ R
Sbjct: 198 LGDARRVFEEMPE-DVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRN 256
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+N AL FR M E P+E TI+ V A Q G + + +H Y K ++
Sbjct: 257 EETNRALEAFRGMQG-ENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIE-LNLF 314
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LI+ Y++CG I A +F+++ + ++++++ ++ISG +M+G ++A+E F M
Sbjct: 315 VGNALINMYSRCGSIDEAQTVFDEM--KDRDVITYNTMISGLSMNGKSRQAIELFRVMVG 372
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
L+P VTF+ VLNACSHGGLV+ G + F M + V P I+HYGC++D+LGR GRLE
Sbjct: 373 RRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLE 432
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + + ++++ TLL AC H N+E+GE+V +++ + + G YVL+ ++
Sbjct: 433 EAYDLIRTMKMTPDHIMLG-TLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVY 491
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ +A ++R + E K PG S +
Sbjct: 492 ASSGKWKEAAQVRAKMKEAGMQKEPGCSSI 521
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 123/271 (45%), Gaps = 33/271 (12%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
K ++YA +F+ NV +T +IDG+ A+ L+ RM+ E P +
Sbjct: 93 KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLH-ESILPDNYLMA 151
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS- 147
++ A +R + +H K GF++ + V +++ Y KCG + A ++FE++
Sbjct: 152 SILKACGSQLALREGREVHSRALKLGFSSNRL-VRLRIMELYGKCGELGDARRVFEEMPE 210
Query: 148 ---------------------------VERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V RK+ V WT++I GF + A+E F MQ
Sbjct: 211 DVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQ 270
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
++PN T + VL+ACS G +E G ++ + + E+ ++ LI+M R G +
Sbjct: 271 GENVRPNEFTIVCVLSACSQLGALEIG-RWVHSYMRKFEIELNLFVGNALINMYSRCGSI 329
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
++A+ V + +V+ + T++ S +G
Sbjct: 330 DEAQTVFDEMKDR--DVITYNTMISGLSMNG 358
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 22/188 (11%)
Query: 102 NCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 161
+ QLI + F F L+ + +KC I A ++F+ N+ +T++I
Sbjct: 69 HAQLIRNGHSQDPFMVFE------LLRSCSKCHAIDYASRIFQ--YTHNPNVYLYTALID 120
Query: 162 GFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVE---EC 218
GF G EA++ + RM + P+ S+L AC + EG + + ++
Sbjct: 121 GFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSS 180
Query: 219 EVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMG-- 276
L ++ ++++ G+ G L A +V +P + VV ++ + S G VE
Sbjct: 181 NRLVRLR----IMELYGKCGELGDARRVFEEMPED---VVASTVMISSYSDQGLVEEAGA 233
Query: 277 --ERVTRK 282
RV RK
Sbjct: 234 VFSRVRRK 241
>gi|359481504|ref|XP_002274656.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
mitochondrial-like [Vitis vinifera]
Length = 538
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 184/330 (55%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + K F++ E N+V++ +I G +K + A +LF +MP RNVVSW +I GY++M
Sbjct: 162 INEAQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFRKMPERNVVSWNAMISGYSQM 221
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ A+ LF M+ E T P+E T A+ + + HG K F +
Sbjct: 222 GYNEEAVNLFVVMLR-EGTLPNERTFPCAISAVANIAALGMGRSFHGSAVKF-LGKFDVF 279
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N L+ YAKCG + +L +F ++ +KN+VSW ++I G+A HG G EA+ FE+MQ
Sbjct: 280 IGNSLVSFYAKCGSMEESLLVFN--TLPKKNIVSWNALICGYANHGRGMEAIYFFEKMQD 337
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
L+PN VT L +L AC+H GLV++G +F+K E L +H+ C++D+L R+GR +
Sbjct: 338 TGLRPNSVTLLGLLLACNHSGLVDKGYSYFNKARVEEPGLLTPEHHACMVDLLSRSGRFK 397
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+AEK +P + + W+ LLG C H N+E+GE RKIL ++ YV++ N
Sbjct: 398 EAEKFLHELPF-VPGIGFWKALLGGCRIHSNMELGELAARKILALDPEDVSSYVMLSNAH 456
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ R+ +R+ + E+ PG S +
Sbjct: 457 SAAGRWQSVSMIRKEMREKRMKGVPGSSWI 486
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 115/262 (43%), Gaps = 34/262 (12%)
Query: 39 LFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNG 98
LF+E+P +VVS T I + R + A+ F RM+A +P++ + V P+
Sbjct: 67 LFDEVPNWDVVSATATIGCFARYHHHEEAIYFFSRMLALN-IKPNQFSFGTVIPSSTALQ 125
Query: 99 DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI------------ 146
D+ + + +H K G + ++ V + ++D YAK I A K FED
Sbjct: 126 DLNSGRQLHACAIKMGLES-NVFVGSAVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLI 184
Query: 147 -----------------SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
+ +N+VSW ++ISG++ G +EAV F M + PN
Sbjct: 185 RGYLKKERFDDALALFRKMPERNVVSWNAMISGYSQMGYNEEAVNLFVVMLREGTLPNER 244
Query: 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
TF ++A ++ + G F V+ D+ L+ + G +E++ V +
Sbjct: 245 TFPCAISAVANIAALGMGRSFHGSAVKFLGKF-DVFIGNSLVSFYAKCGSMEESLLVFNT 303
Query: 250 IPSEITNVVVWRTLLGACSFHG 271
+P + N+V W L+ + HG
Sbjct: 304 LPKK--NIVSWNALICGYANHG 323
Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 84/203 (41%), Gaps = 38/203 (18%)
Query: 99 DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 158
++ Q IHG K G + + +Y+ ++ A KLF++ V ++VS T+
Sbjct: 28 QLKESQRIHGRAIKLGTTILEPDI----VCSYSASKALWDACKLFDE--VPNWDVVSATA 81
Query: 159 IISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS-----------HGGLVEEG 207
I FA + +EA+ F RM + +KPN+ +F +V+ + + H ++ G
Sbjct: 82 TIGCFARYHHHEEAIYFFSRMLALNIKPNQFSFGTVIPSSTALQDLNSGRQLHACAIKMG 141
Query: 208 LK-----------FFDKMVEECEVL--------PDIKHYGCLIDMLGRAGRLEQAEKVAS 248
L+ F+ K+ E P++ Y LI + R + A +
Sbjct: 142 LESNVFVGSAVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFR 201
Query: 249 GIPSEITNVVVWRTLLGACSFHG 271
+P NVV W ++ S G
Sbjct: 202 KMPER--NVVSWNAMISGYSQMG 222
>gi|116309337|emb|CAH66421.1| H0622F05.4 [Oryza sativa Indica Group]
gi|116309402|emb|CAH66479.1| OSIGBa0137L20.8 [Oryza sativa Indica Group]
Length = 545
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 122/355 (34%), Positives = 184/355 (51%), Gaps = 33/355 (9%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD++P RN+V WN M+ G VK G+LE AR LF+EMP R ++T +I GY
Sbjct: 192 ELFDQIPHRNVVHWNAMVDGYVKCGDLEGARKLFDEMPERTPAAYTSLIGGYLNAGNMGA 251
Query: 67 ALALFRRM--------------------------VACEYTE----PSEITILAVFPAIWQ 96
A LF ++ + E+ + P E+ I+ + A Q
Sbjct: 252 ARTLFDKLEDRDLFAWSTMISGCAQNGYPGEALRIFNEFQKQEICPDELVIVGLMSACSQ 311
Query: 97 NGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 156
G++ + I GY + ++HV LI+ AKCG + A LFE +SV +++ S+
Sbjct: 312 LGNITLARWIEGYIMIYPIDMNNVHVMAGLINMNAKCGNMERATLLFESMSV--RDVFSY 369
Query: 157 TSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVE 216
S++ G +HG +AVE F +M + P+ F VL ACSH GLVEEG ++FD M
Sbjct: 370 CSMMQGHCLHGSASKAVELFSQMLLEGITPDNAAFTVVLTACSHAGLVEEGKRYFDMMKN 429
Query: 217 ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMG 276
E ++P HY CL+ +LGR G L A ++ +P E + W LLG C FH ++E+G
Sbjct: 430 EYMIVPSGDHYACLVSLLGRFGMLRDAYELIKSMPGE-PHPGAWGALLGGCKFHCDIELG 488
Query: 277 ERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ +K+ E+E G+YV + NI A + R+G+ R + R K G +LV
Sbjct: 489 KIAAKKLFEIEPENAGNYVSLSNIYANIDRWGNVSETRAEMTGRGITKIAGCTLV 543
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 131/312 (41%), Gaps = 49/312 (15%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFD L + V+W ++T V G++ AR LF+++P RNVV W ++DGY + GA
Sbjct: 162 LFDSLTNPSEVSWTAIVTAYVNSGDILTARELFDQIPHRNVVHWNAMVDGYVKCGDLEGA 221
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
LF M P PA + + LI
Sbjct: 222 RKLFDEM-------PERT------PAAYTS----------------------------LI 240
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
Y G + +A LF+ + E ++L +W+++ISG A +G EA+ F QK + P+
Sbjct: 241 GGYLNAGNMGAARTLFDKL--EDRDLFAWSTMISGCAQNGYPGEALRIFNEFQKQEICPD 298
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+ + +++ACS G + ++ + ++ LI+M + G +E+A +
Sbjct: 299 ELVIVGLMSACSQLGNITLARWIEGYIMIYPIDMNNVHVMAGLINMNAKCGNMERATLLF 358
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMG-ERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ + +V + +++ HG+ E ++ +LE G D +L
Sbjct: 359 ESM--SVRDVFSYCSMMQGHCLHGSASKAVELFSQMLLE---GITPDNAAFTVVLTACSH 413
Query: 307 YGDAERLRRVVD 318
G E +R D
Sbjct: 414 AGLVEEGKRYFD 425
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 14/192 (7%)
Query: 80 TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSA 139
+ P + + A + + +H + G +A + V LI Y +CG +A
Sbjct: 101 SRPDAFSFPPLLCACARASSLPTGASLHAAAIRLGVDA-DLFVRTALIQFYGRCGAAAAA 159
Query: 140 LKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS 199
LF+ S+ + VSWT+I++ + G A E F+++ N V + ++++
Sbjct: 160 RALFD--SLTNPSEVSWTAIVTAYVNSGDILTARELFDQIPHR----NVVHWNAMVDGYV 213
Query: 200 HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVV 259
G +E K FD+M E Y LI AG + A + + E ++
Sbjct: 214 KCGDLEGARKLFDEMPERTPAA-----YTSLIGGYLNAGNMGAARTLFDKL--EDRDLFA 266
Query: 260 WRTLLGACSFHG 271
W T++ C+ +G
Sbjct: 267 WSTMISGCAQNG 278
>gi|147797709|emb|CAN61058.1| hypothetical protein VITISV_011618 [Vitis vinifera]
Length = 529
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 121/324 (37%), Positives = 186/324 (57%), Gaps = 11/324 (3%)
Query: 12 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALF 71
L E ++ N +I K G + A +F+ MP RNVVSWT +I+GY+ N N AL F
Sbjct: 210 LIEXDVFVHNALIDVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFF 269
Query: 72 RRMVACEYTEPSEITILAVFPAIWQNGDVRNCQL---IHGYGEKRGFNAFHIHVSNCLID 128
++M A E P EIT+L V + +R+ +L I Y K G ++N L+D
Sbjct: 270 KQMEA-ENIRPDEITVLGV---VCMCSKLRSFELGEWISQYVVKTGLVKESPAIANVLMD 325
Query: 129 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR 188
+AKCG I A ++F+ +E K +VSWT +I G AM+G G A+ F +MQ+ KP+
Sbjct: 326 MHAKCGNIKRACQIFD--GMEEKTIVSWTIMIQGLAMYGHGLSALVRFCQMQREGFKPDS 383
Query: 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
+ FLS+L+ACSH GLV+EG + F M + + P ++HYGC++D+L RAG +++A K
Sbjct: 384 LVFLSLLSACSHAGLVDEGWRCFSSMEADYHIXPWMEHYGCMVDILCRAGLVDEAFKFVQ 443
Query: 249 GIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
+P + +++VWRTLLGAC GN+ + +V + E+ DYVL+ N+ A +
Sbjct: 444 NMPIK-PDMIVWRTLLGACXXQGNISLANQVMNXLCELGPKKSEDYVLLSNLFASNAEWD 502
Query: 309 DAERLRRVVDERNALKF-PGRSLV 331
+ +R+ + +R K PG S +
Sbjct: 503 NVXEVRKEMGDRGVTKQDPGCSFI 526
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 136/273 (49%), Gaps = 10/273 (3%)
Query: 37 RSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQ 96
+ +F+EMP R++V W +I Y N + MV+ +P+ +T +++
Sbjct: 134 QQIFDEMPQRDLVMWNALIAAYAHGNCPYKVREVSYDMVSSN-VKPNGVTAVSILSVCSS 192
Query: 97 NGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 156
+R + +HGY K + V N LID Y+KCG I A+++F+ + + +N+VSW
Sbjct: 193 LRALREGKAVHGYVTKNLIEX-DVFVHNALIDVYSKCGSIRDAVQVFQLMPM--RNVVSW 249
Query: 157 TSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVE 216
TS+I+G++ + EA+ F++M+ ++P+ +T L V+ CS E G +V+
Sbjct: 250 TSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCMCSKLRSFELGEWISQYVVK 309
Query: 217 ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMG 276
V L+DM + G +++A ++ G+ E +V W ++ + +G+ G
Sbjct: 310 TGLVKESPAIANVLMDMHAKCGNIKRACQIFDGM--EEKTIVSWTIMIQGLAMYGH---G 364
Query: 277 ERVTRKILEMER-GYGGDYVLMYNILAGVWRYG 308
+ +M+R G+ D ++ ++L+ G
Sbjct: 365 LSALVRFCQMQREGFKPDSLVFLSLLSACSHAG 397
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 108/242 (44%), Gaps = 15/242 (6%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G AR + +++ + +W II GY N A+ ++ V + + T++ V
Sbjct: 27 GTTSVARRIADQIDGLDTYTWNTIIRGYLEGNDPEEAILIYNH-VRKKGLKVDTYTLVFV 85
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYA----KCGCIFSALKLFEDI 146
A + + IHG K GF F + + L+ Y CG ++F+++
Sbjct: 86 IKACGLRPVILEGEQIHGQIFKLGFE-FEVIIQTALLSMYGLFDEDCG----LQQIFDEM 140
Query: 147 SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEE 206
+++LV W ++I+ +A + E M +KPN VT +S+L+ CS + E
Sbjct: 141 P--QRDLVMWNALIAAYAHGNCPYKVREVSYDMVSSNVKPNGVTAVSILSVCSSLRALRE 198
Query: 207 GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
G K V + + D+ + LID+ + G + A +V +P + NVV W +L+
Sbjct: 199 G-KAVHGYVTKNLIEXDVFVHNALIDVYSKCGSIRDAVQVFQLMP--MRNVVSWTSLING 255
Query: 267 CS 268
S
Sbjct: 256 YS 257
>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 970
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/320 (36%), Positives = 193/320 (60%), Gaps = 8/320 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
ER+L + +++ + GEL ++LF+ M +++VSW +I GY + + AL +FR+
Sbjct: 528 ERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQ 587
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF--NAFHIHVSNCLIDTYA 131
MV + I+++ VF A +R + H Y K +AF ++ LID YA
Sbjct: 588 MVLYG-IQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAF---IACSLIDMYA 643
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191
K G I + K+F ++ K+ SW ++I G+ +HG+ KEA++ FE MQ+ P+ +TF
Sbjct: 644 KNGSITQSSKVFN--GLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTF 701
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
L VL AC+H GL+ EGL++ D+M + P++KHY C+IDMLGRAG+L++A +V +
Sbjct: 702 LGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEM 761
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
SE +V +W++LL +C H N+EMGE+V K+ E+E +YVL+ N+ AG+ ++ D
Sbjct: 762 SEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVR 821
Query: 312 RLRRVVDERNALKFPGRSLV 331
++R+ ++E + K G S +
Sbjct: 822 KVRQRMNEMSLRKDAGCSWI 841
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 98/187 (52%), Gaps = 4/187 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
++ LV N ++ K G + A+ +F+ +NVVSW ++ G++ ++G + R+
Sbjct: 324 DKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQ 383
Query: 74 MVA-CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK 132
M+A E + E+TIL P + + + + +H Y K+ F ++ V+N + +YAK
Sbjct: 384 MLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEF-VYNELVANAFVASYAK 442
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
CG + A ++F I K + SW ++I G A + +++ +M+ L P+ T
Sbjct: 443 CGSLSYAQRVFHGI--RSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVC 500
Query: 193 SVLNACS 199
S+L+ACS
Sbjct: 501 SLLSACS 507
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 118/281 (41%), Gaps = 10/281 (3%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
+IT G + +R +F+ + +N+ W +I Y+R + L F M++ P
Sbjct: 126 IITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLP 185
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
T V A DV +HG K G + V N L+ Y G + AL+L
Sbjct: 186 DHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGL-VEDVFVGNALVSFYGTHGFVTDALQL 244
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAV----ENFERMQKVVLKPNRVTFLSVLNAC 198
F DI ER NLVSW S+I F+ +G +E+ E E P+ T ++VL C
Sbjct: 245 F-DIMPER-NLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVC 302
Query: 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
+ + G K + + ++ L+DM + G + A+ + + NVV
Sbjct: 303 AREREIGLG-KGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFK--MNNNKNVV 359
Query: 259 VWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
W T++G S G+ V R++L D V + N
Sbjct: 360 SWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILN 400
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 119/254 (46%), Gaps = 19/254 (7%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +++ G + A LF+ MP RN+VSW +I ++ S + L M+ E
Sbjct: 226 NALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMME-ENG 284
Query: 81 E----PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136
+ P T++ V P + ++ + +HG+ K + + ++N L+D Y+KCGCI
Sbjct: 285 DGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDK-ELVLNNALMDMYSKCGCI 343
Query: 137 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV-----LKPNRVTF 191
+A +F+ KN+VSW +++ GF+ G + F+ +++++ +K + VT
Sbjct: 344 TNAQMIFK--MNNNKNVVSWNTMVGGFSAEG---DTHGTFDVLRQMLAGGEDVKADEVTI 398
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
L+ + C H + LK + E + + + + G L A++V GI
Sbjct: 399 LNAVPVCFHESFL-PSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIR 457
Query: 252 SEITNVVVWRTLLG 265
S+ N W L+G
Sbjct: 458 SKTVN--SWNALIG 469
>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/314 (37%), Positives = 180/314 (57%), Gaps = 5/314 (1%)
Query: 18 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVAC 77
V N +I + G ++YA +FE + C++VVSWT +I Y +N AL +F M
Sbjct: 397 VLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKET 456
Query: 78 EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIF 137
EP +T++++ A+ ++ + IHG+ ++GF +SN L+D YA+CG +
Sbjct: 457 G-LEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGF-ILEGSISNTLVDMYARCGSVE 514
Query: 138 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197
A K+F + +NL+ WT++IS + MHG G+ AVE F RM+ + P+ +TFL++L A
Sbjct: 515 DAYKIF--TCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYA 572
Query: 198 CSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNV 257
CSH GLV EG F + M E ++ P +HY CL+D+LGR LE+A ++ + +E T
Sbjct: 573 CSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTP- 631
Query: 258 VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVV 317
VW LLGAC H N E+GE K+LE++ G+YVL+ N+ A R+ D E +R +
Sbjct: 632 EVWCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRM 691
Query: 318 DERNALKFPGRSLV 331
K PG S +
Sbjct: 692 KGSGLTKNPGCSWI 705
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 131/258 (50%), Gaps = 8/258 (3%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ N++ N +I K + Y F+ M ++++SWT GY + AL L R+
Sbjct: 293 DSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQ 352
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
+ E + I ++ A + + IHGY + G + + N +ID Y +C
Sbjct: 353 L-QMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLS--DPVLQNTIIDVYGEC 409
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G I A+++FE S+E K++VSWTS+IS + +G+ +A+E F M++ L+P+ VT +S
Sbjct: 410 GIIDYAVRIFE--SIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVS 467
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+L+A +++G + ++ + +L L+DM R G +E A K+ + +
Sbjct: 468 ILSAVCSLSTLKKGKEIHGFIIRKGFILEG-SISNTLVDMYARCGSVEDAYKIFTCTKNR 526
Query: 254 ITNVVVWRTLLGACSFHG 271
N+++W ++ A HG
Sbjct: 527 --NLILWTAMISAYGMHG 542
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 16/241 (6%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVAC-----EYTEPS 83
K G + A +F++M R++ +W ++ GY + GAL ++R M YT P
Sbjct: 4 KCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPV 63
Query: 84 EITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLF 143
+ + ++ + IHG K G ++F + V N L+ YAKC I A KLF
Sbjct: 64 LLKACGIVEDLFCGAE------IHGLAIKYGCDSF-VFVVNSLVALYAKCNDINGARKLF 116
Query: 144 EDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGL 203
+ + V R ++VSW SIIS ++ +GM EA+ F M K + N TF + L AC
Sbjct: 117 DRMYV-RNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSF 175
Query: 204 VEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTL 263
++ G++ +++ VL D+ L+ M R G++ +A + + E ++V W ++
Sbjct: 176 IKLGMQIHAAILKSGRVL-DVYVANALVAMYVRFGKMPEAAVIFGNL--EGKDIVTWNSM 232
Query: 264 L 264
L
Sbjct: 233 L 233
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 144/294 (48%), Gaps = 30/294 (10%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ V++G++ A +F + +++V+W ++ G+ + + AL F + +
Sbjct: 199 NALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNAD-L 257
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+P +++I+++ A + G + N + IH Y K GF++ +I V N LID YAKC C+
Sbjct: 258 KPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDS-NILVGNTLIDMYAKCCCMSYGG 316
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
+ F+ ++ K+L+SWT+ +G+A + +A+E ++Q + + S+L AC
Sbjct: 317 RAFDLMA--HKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLAC-- 372
Query: 201 GGLVEEGLKFFDKMVEECEV-----LPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
GL K+ E L D +ID+ G G ++ A ++ I E
Sbjct: 373 -----RGLNCLGKIKEIHGYTIRGGLSDPVLQNTIIDVYGECGIIDYAVRIFESI--ECK 425
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEM-----ERGYGGDYVLMYNILAGV 304
+VV W +++ +C H + K LE+ E G DYV + +IL+ V
Sbjct: 426 DVVSWTSMI-SCYVHNG------LANKALEVFSSMKETGLEPDYVTLVSILSAV 472
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 105/226 (46%), Gaps = 13/226 (5%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRN-VVSWTGIIDGYTRMNRSNGALALFRRMVACEY 79
N ++ K ++ AR LF+ M RN VVSW II Y+ AL LF M+
Sbjct: 97 NSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGV 156
Query: 80 TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSA 139
+ T A A + ++ IH K G ++V+N L+ Y + G + A
Sbjct: 157 V-TNTYTFAAALQACEDSSFIKLGMQIHAAILKSG-RVLDVYVANALVAMYVRFGKMPEA 214
Query: 140 LKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS 199
+F ++ E K++V+W S+++GF +G+ EA+E F +Q LKP++V+ +S++ A
Sbjct: 215 AVIFGNL--EGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASG 272
Query: 200 HGGLVEEGLKF--------FDKMVEECEVLPDIKHYGCLIDMLGRA 237
G + G + FD + L D+ C + GRA
Sbjct: 273 RLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRA 318
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
Y KCG + A +F+ +S +++ +W +++ G+ +G A+E + M+ + + +
Sbjct: 2 YGKCGSVLDAEMIFDKMS--ERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSY 59
Query: 190 TFLSVLNACSHGGLVEE 206
TF +L AC G+VE+
Sbjct: 60 TFPVLLKAC---GIVED 73
>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
Length = 865
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/328 (31%), Positives = 184/328 (56%), Gaps = 4/328 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L++ +F + ER++V+W MIT + G + AR F+ M RN ++W ++ Y +
Sbjct: 422 LQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQH 481
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
L ++ M++ + P +T + +F G + I G+ K G ++
Sbjct: 482 GAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGL-ILNVS 540
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V+N I Y+KCG I A KLF+ ++ K++VSW ++I+G++ HGMGK+A + F+ M
Sbjct: 541 VANAAITMYSKCGRISEAQKLFDLLN--GKDVVSWNAMITGYSQHGMGKQAAKTFDDMLS 598
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KP+ +++++VL+ CSH GLV+EG +FD M + P ++H+ C++D+LGRAG L
Sbjct: 599 KGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLT 658
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A+ + +P + T VW LL AC HGN E+ E + + E++ G Y+L+ I
Sbjct: 659 EAKDLIDKMPMKPT-AEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIY 717
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRS 329
+ + D+ ++R+++ ++ K PG S
Sbjct: 718 SDAGKSDDSAQVRKLMRDKGIKKNPGYS 745
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 142/324 (43%), Gaps = 44/324 (13%)
Query: 2 LKDGSKLF-DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L D +L ++ E N++T N+M+ G K G L A LF+ MP R+V SW ++ GY +
Sbjct: 55 LSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQ 114
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPA---------------------IWQNGD 99
R L F M + P+ T V + W + D
Sbjct: 115 ARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPD 174
Query: 100 VRNCQLIH----GYGE--KRGFNAFH---IHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
V + GY + R F+ I N ++ YAK I A++ FED++
Sbjct: 175 VETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMA--E 232
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
+++VSW +I+ + G +EA+ M + ++ + T+ S L AC+ + G +
Sbjct: 233 RDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQL 292
Query: 211 FDKMVEECEVLPDIKHY--GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC- 267
K++ LP I Y LI++ + G ++A++V + + N V W L+G
Sbjct: 293 HAKVIRS---LPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDR--NSVSWTVLIGGSL 347
Query: 268 ---SFHGNVEMGERVTRKILEMER 288
F +VE+ ++ +++ +++
Sbjct: 348 QYECFSKSVELFNQMRAELMAIDQ 371
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 143/343 (41%), Gaps = 80/343 (23%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
K+ ++F+ L +RN V+W V+I G +++ + LF +M + ID +
Sbjct: 321 FKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMA-----IDQFALA 375
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+G F RM C + +H K G N I
Sbjct: 376 TLISGC---FNRMDLCLGRQ------------------------LHSLCLKSGHNR-AIV 407
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VSN LI YAKCG + +A +F +S +++VSWTS+I+ ++ G +A E F+ M
Sbjct: 408 VSNSLISLYAKCGDLQNAEFVFSSMS--ERDIVSWTSMITAYSQIGNIIKAREFFDGMA- 464
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY-----GC------- 229
N +T+ ++L A G E+GLK + M+ + +V PD Y GC
Sbjct: 465 ---TRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANK 521
Query: 230 -----------------------LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
I M + GR+ +A+K+ + + +VV W ++
Sbjct: 522 LGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGK--DVVSWNAMITG 579
Query: 267 CSFHGNVEMGERVTRKILEM-ERGYGGDYVLMYNILAGVWRYG 308
S HG MG++ + +M +G DY+ +L+G G
Sbjct: 580 YSQHG---MGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSG 619
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 129/275 (46%), Gaps = 19/275 (6%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
S+LF ++ + N M+ G K +++A FE+M R+VVSW +I ++ R
Sbjct: 192 ASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRV 251
Query: 65 NGALALF----RRMVACEYTE-PSEITILA-VFPAIWQNGDVRNCQLIHGYGEKRGFNAF 118
AL L R+ V + T S +T A +F W G + ++I R
Sbjct: 252 REALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGW--GKQLHAKVI------RSLPQI 303
Query: 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER 178
+V++ LI+ YAKCG A ++F S++ +N VSWT +I G + ++VE F +
Sbjct: 304 DPYVASALIELYAKCGSFKEAKRVFN--SLQDRNSVSWTVLIGGSLQYECFSKSVELFNQ 361
Query: 179 MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
M+ ++ ++ ++++ C + + G + ++ I LI + + G
Sbjct: 362 MRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRA-IVVSNSLISLYAKCG 420
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
L+ AE V S + ++V W +++ A S GN+
Sbjct: 421 DLQNAEFVFSSMSER--DIVSWTSMITAYSQIGNI 453
>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
Length = 1702
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/320 (36%), Positives = 193/320 (60%), Gaps = 8/320 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
ER+L + +++ + GEL ++LF+ M +++VSW +I GY + + AL +FR+
Sbjct: 883 ERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQ 942
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF--NAFHIHVSNCLIDTYA 131
MV + I+++ VF A +R + H Y K +AF ++ LID YA
Sbjct: 943 MVLYG-IQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAF---IACSLIDMYA 998
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191
K G I + K+F ++ K+ SW ++I G+ +HG+ KEA++ FE MQ+ P+ +TF
Sbjct: 999 KNGSITQSSKVFN--GLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTF 1056
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
L VL AC+H GL+ EGL++ D+M + P++KHY C+IDMLGRAG+L++A +V +
Sbjct: 1057 LGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEM 1116
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
SE +V +W++LL +C H N+EMGE+V K+ E+E +YVL+ N+ AG+ ++ D
Sbjct: 1117 SEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVR 1176
Query: 312 RLRRVVDERNALKFPGRSLV 331
++R+ ++E + K G S +
Sbjct: 1177 KVRQRMNEMSLRKDAGCSWI 1196
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 98/187 (52%), Gaps = 4/187 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
++ LV N ++ K G + A+ +F+ +NVVSW ++ G++ ++G + R+
Sbjct: 679 DKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQ 738
Query: 74 MVA-CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK 132
M+A E + E+TIL P + + + + +H Y K+ F ++ V+N + +YAK
Sbjct: 739 MLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEF-VYNELVANAFVASYAK 797
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
CG + A ++F I K + SW ++I G A + +++ +M+ L P+ T
Sbjct: 798 CGSLSYAQRVFHGI--RSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVC 855
Query: 193 SVLNACS 199
S+L+ACS
Sbjct: 856 SLLSACS 862
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 118/281 (41%), Gaps = 10/281 (3%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
+IT G + +R +F+ + +N+ W +I Y+R + L F M++ P
Sbjct: 481 IITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLP 540
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
T V A DV +HG K G + V N L+ Y G + AL+L
Sbjct: 541 DHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGL-VEDVFVGNALVSFYGTHGFVTDALQL 599
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAV----ENFERMQKVVLKPNRVTFLSVLNAC 198
F DI ER NLVSW S+I F+ +G +E+ E E P+ T ++VL C
Sbjct: 600 F-DIMPER-NLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVC 657
Query: 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
+ + G K + + ++ L+DM + G + A+ + + NVV
Sbjct: 658 AREREIGLG-KGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKM--NNNKNVV 714
Query: 259 VWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
W T++G S G+ V R++L D V + N
Sbjct: 715 SWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILN 755
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 119/254 (46%), Gaps = 19/254 (7%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +++ G + A LF+ MP RN+VSW +I ++ S + L M+ E
Sbjct: 581 NALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMME-ENG 639
Query: 81 E----PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136
+ P T++ V P + ++ + +HG+ K + + ++N L+D Y+KCGCI
Sbjct: 640 DGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDK-ELVLNNALMDMYSKCGCI 698
Query: 137 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV-----LKPNRVTF 191
+A +F+ KN+VSW +++ GF+ G + F+ +++++ +K + VT
Sbjct: 699 TNAQMIFK--MNNNKNVVSWNTMVGGFSAEG---DTHGTFDVLRQMLAGGEDVKADEVTI 753
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
L+ + C H + LK + E + + + + G L A++V GI
Sbjct: 754 LNAVPVCFHESFL-PSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIR 812
Query: 252 SEITNVVVWRTLLG 265
S+ N W L+G
Sbjct: 813 SKTVN--SWNALIG 824
>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g66520-like [Glycine max]
Length = 622
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 122/329 (37%), Positives = 193/329 (58%), Gaps = 5/329 (1%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ K+F +R+L +WN +I V G + A+ LF+ M R+VVSW+ II GY ++
Sbjct: 168 ESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGC 227
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
AL F +M+ +P+E T+++ A + + IH Y K G + +
Sbjct: 228 FMEALDFFHKMLQIG-PKPNEYTLVSALAACSNLVALDQGKWIHAYIGK-GEIKMNERLL 285
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
+ID YAKCG I SA ++F + V++K + W ++I GFAMHGM EA+ FE+M+
Sbjct: 286 ASIIDMYAKCGEIESASRVFFEHKVKQKVWL-WNAMIGGFAMHGMPNEAINVFEQMKVEK 344
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
+ PN+VTF+++LNACSHG +VEEG +F MV + + P+I+HYGC++D+L R+G L++A
Sbjct: 345 ISPNKVTFIALLNACSHGYMVEEGKLYFRLMVSDYAITPEIEHYGCMVDLLSRSGLLKEA 404
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
E + S +P +V +W LL AC + ++E G R+ R I M+ + G +VL+ NI +
Sbjct: 405 EDMISSMPMA-PDVAIWGALLNACRIYKDMERGYRIGRIIKGMDPNHIGCHVLLSNIYST 463
Query: 304 VWRYGDAERLRRVVD-ERNALKFPGRSLV 331
R+ +A LR + R+ K PG S +
Sbjct: 464 SGRWNEARILREKNEISRDRKKIPGCSSI 492
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 125/275 (45%), Gaps = 33/275 (12%)
Query: 27 LVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS-NGALALFRRMVACEYTEPSEI 85
L L YA LF+++P ++ + +I ++ S + +L +FR + P+
Sbjct: 57 LAACASLSYAHKLFDQIPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRY 116
Query: 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFE- 144
+ + F A V+ + + + K G ++ V N LI Y K G + + K+F+
Sbjct: 117 SFVFAFSACGNGLGVQEGEQVRIHAVKVGLEN-NVFVVNALIGMYGKWGLVGESQKVFQW 175
Query: 145 --------------------DISVER--------KNLVSWTSIISGFAMHGMGKEAVENF 176
++S+ + +++VSW++II+G+ G EA++ F
Sbjct: 176 AVDRDLYSWNTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFF 235
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
+M ++ KPN T +S L ACS+ +++G K+ + + E+ + + +IDM +
Sbjct: 236 HKMLQIGPKPNEYTLVSALAACSNLVALDQG-KWIHAYIGKGEIKMNERLLASIIDMYAK 294
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
G +E A +V + V +W ++G + HG
Sbjct: 295 CGEIESASRVFFEHKVK-QKVWLWNAMIGGFAMHG 328
Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 7/151 (4%)
Query: 131 AKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM--HGMGKEAVENFERMQKVVLKPNR 188
A C + A KLF+ I + +L + ++I ++ H + Q + L PNR
Sbjct: 58 AACASLSYAHKLFDQIP--QPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNR 115
Query: 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248
+F+ +AC +G V+EG + V + + ++ LI M G+ G + +++KV
Sbjct: 116 YSFVFAFSACGNGLGVQEGEQVRIHAV-KVGLENNVFVVNALIGMYGKWGLVGESQKVFQ 174
Query: 249 GIPSEITNVVVWRTLLGACSFHGNVEMGERV 279
++ W TL+ A GN+ + + +
Sbjct: 175 WAVDR--DLYSWNTLIAAYVGSGNMSLAKEL 203
>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
Length = 771
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/303 (36%), Positives = 179/303 (59%), Gaps = 5/303 (1%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
K ++ AR+LF+ R+V+ WT ++ Y + N + A LF +M P+++TI+
Sbjct: 345 KCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQM-RTSGVRPTKVTIV 403
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
++ G + + +H Y +K I ++ L+D YAKCG I +A +LF I
Sbjct: 404 SLLSLCAVAGALDLGKWVHSYIDKERVEVDCI-LNTALVDMYAKCGDINAAGRLF--IEA 460
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
+++ W +II+GFAMHG G+EA++ F M++ +KPN +TF+ +L+ACSH GLV EG
Sbjct: 461 ISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGK 520
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
K F+KMV ++P I+HYGC++D+LGRAG L++A ++ +P + N +VW L+ AC
Sbjct: 521 KLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIK-PNTIVWGALVAACR 579
Query: 269 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGR 328
H N ++GE ++LE+E G VLM NI A R+ DA +R+ + K PG
Sbjct: 580 LHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGH 639
Query: 329 SLV 331
S++
Sbjct: 640 SVI 642
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 130/255 (50%), Gaps = 9/255 (3%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+R++ N ++ + +EYAR +F++M R+VVSW+ +I +R + AL L R
Sbjct: 126 DRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIRE 185
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV--SNCLIDTYA 131
M + PSE+ ++++ ++R + +H Y R N H+ V + L+D YA
Sbjct: 186 MNFMQ-VRPSEVAMVSMVNLFADTANMRMGKAMHAY-VIRNSNNEHMGVPTTTALLDMYA 243
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191
KCG + A +LF ++ +K +VSWT++I+G +E + F RMQ+ + PN +T
Sbjct: 244 KCGHLGLARQLFNGLT--QKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITM 301
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
LS++ C G ++ G + ++ + + L+DM G+ + A +
Sbjct: 302 LSLIVECGFTGALQLGKQLHAYILRNGFSV-SLALATALVDMYGKCSDIRNARALFDS-- 358
Query: 252 SEITNVVVWRTLLGA 266
++ +V++W +L A
Sbjct: 359 TQNRDVMIWTAMLSA 373
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 130/282 (46%), Gaps = 41/282 (14%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LF+ L ++ +V+W MI G ++ LE LF M N+
Sbjct: 253 QLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIF----------------- 295
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
P+EIT+L++ G ++ + +H Y + GF + + ++ L
Sbjct: 296 ---------------PNEITMLSLIVECGFTGALQLGKQLHAYILRNGF-SVSLALATAL 339
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
+D Y KC I +A LF+ S + ++++ WT+++S +A +A F++M+ ++P
Sbjct: 340 VDMYGKCSDIRNARALFD--STQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRP 397
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+VT +S+L+ C+ G ++ G K+ +++ V D L+DM + G + A ++
Sbjct: 398 TKVTIVSLLSLCAVAGALDLG-KWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRL 456
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
I + ++ +W ++ + HG GE EMER
Sbjct: 457 F--IEAISRDICMWNAIITGFAMHG---YGEEALDIFAEMER 493
>gi|115458312|ref|NP_001052756.1| Os04g0414800 [Oryza sativa Japonica Group]
gi|32479728|emb|CAE01515.1| OJ991214_12.4 [Oryza sativa Japonica Group]
gi|113564327|dbj|BAF14670.1| Os04g0414800 [Oryza sativa Japonica Group]
gi|125590342|gb|EAZ30692.1| hypothetical protein OsJ_14749 [Oryza sativa Japonica Group]
Length = 545
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 122/355 (34%), Positives = 184/355 (51%), Gaps = 33/355 (9%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFD++P RN+V WN M+ G VK G+LE AR LF+EMP R ++T +I GY
Sbjct: 192 ELFDQIPHRNVVHWNAMVDGYVKCGDLEGARKLFDEMPERTPAAYTSLIGGYLNAGNMGA 251
Query: 67 ALALFRRM--------------------------VACEYTE----PSEITILAVFPAIWQ 96
A LF ++ + E+ + P E+ I+ + A Q
Sbjct: 252 ARTLFDKLEDRDLFAWSTMISGCAQNGYPGEALRIFNEFQKQEICPDELVIVGLMSACSQ 311
Query: 97 NGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 156
G++ + I GY + ++HV LI+ AKCG + A LFE +SV +++ S+
Sbjct: 312 LGNITLARWIEGYIMIYPIDMNNVHVMAGLINMNAKCGNMERATLLFESMSV--RDVFSY 369
Query: 157 TSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVE 216
S++ G +HG +AVE F +M + P+ F VL ACSH GLVEEG ++FD M
Sbjct: 370 CSMMQGHCLHGSASKAVELFSQMLLEGITPDNAAFTVVLTACSHAGLVEEGKRYFDMMKN 429
Query: 217 ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMG 276
E ++P HY CL+ +LGR G L A ++ +P E + W LLG C FH ++E+G
Sbjct: 430 EYMIVPSGDHYACLVSLLGRFGMLRDAYELIKSMPGE-PHPGAWGALLGGCKFHCDIELG 488
Query: 277 ERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ +K+ E+E G+YV + NI A + R+G+ R + R K G +LV
Sbjct: 489 KIAAKKLFEIEPENAGNYVSLSNIYANIDRWGNVSETRAEMTGRGITKIAGCTLV 543
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 131/312 (41%), Gaps = 49/312 (15%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFD L + V+W ++T V G++ AR LF+++P RNVV W ++DGY + GA
Sbjct: 162 LFDSLTNPSEVSWTAIVTAYVNSGDILTARELFDQIPHRNVVHWNAMVDGYVKCGDLEGA 221
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
LF M P PA + + LI
Sbjct: 222 RKLFDEM-------PERT------PAAYTS----------------------------LI 240
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
Y G + +A LF+ + E ++L +W+++ISG A +G EA+ F QK + P+
Sbjct: 241 GGYLNAGNMGAARTLFDKL--EDRDLFAWSTMISGCAQNGYPGEALRIFNEFQKQEICPD 298
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+ + +++ACS G + ++ + ++ LI+M + G +E+A +
Sbjct: 299 ELVIVGLMSACSQLGNITLARWIEGYIMIYPIDMNNVHVMAGLINMNAKCGNMERATLLF 358
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMG-ERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+ + +V + +++ HG+ E ++ +LE G D +L
Sbjct: 359 ESM--SVRDVFSYCSMMQGHCLHGSASKAVELFSQMLLE---GITPDNAAFTVVLTACSH 413
Query: 307 YGDAERLRRVVD 318
G E +R D
Sbjct: 414 AGLVEEGKRYFD 425
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 14/192 (7%)
Query: 80 TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSA 139
+ P + + A + + +H + G +A + V LI Y +CG +A
Sbjct: 101 SRPDAFSFPPLLCACARASSLPTGASLHAAAIRLGVDA-DLFVRTALIQFYGRCGAAAAA 159
Query: 140 LKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS 199
LF+ S+ + VSWT+I++ + G A E F+++ N V + ++++
Sbjct: 160 RALFD--SLTNPSEVSWTAIVTAYVNSGDILTARELFDQIPHR----NVVHWNAMVDGYV 213
Query: 200 HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVV 259
G +E K FD+M E Y LI AG + A + + E ++
Sbjct: 214 KCGDLEGARKLFDEMPERTPAA-----YTSLIGGYLNAGNMGAARTLFDKL--EDRDLFA 266
Query: 260 WRTLLGACSFHG 271
W T++ C+ +G
Sbjct: 267 WSTMISGCAQNG 278
>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/326 (33%), Positives = 190/326 (58%), Gaps = 6/326 (1%)
Query: 7 KLFDELP-ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 65
K D+L ++ N +I+ K ++ A +F + R VSW +I GY + R +
Sbjct: 373 KFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVS 432
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
AL F M + +P T+++V PA+ + R+ + IHG + + +I V+
Sbjct: 433 EALNCFSEMKSLG-MKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDK-NIFVTTA 490
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
L+D Y+KCG I A KLF+ IS +++++W ++I G+ HG+G+ A++ F++M+K ++
Sbjct: 491 LVDMYSKCGAIHMARKLFDMIS--DRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVE 548
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN +T+LSV++ACSH GLV+EGL+ F M ++ + P + HYG ++D+LGRAGR+++A
Sbjct: 549 PNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWD 608
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
+P + V+ GAC H N+E+GE+ +K+ E+ GG +VL+ NI A
Sbjct: 609 FIENMPIS-PGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTS 667
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
++ +R+ ++++ K PG S+V
Sbjct: 668 KWSKVAEVRKTMEKKGLKKTPGCSVV 693
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 133/249 (53%), Gaps = 9/249 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDG 57
LK G ++ +L + +TG+V K +++ A +F+ MP R++VSW II G
Sbjct: 163 LKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAG 222
Query: 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117
+++ + AL L RM E P IT++ V PA G + + IHGY + GF
Sbjct: 223 FSQNGFAKKALELVLRM-QDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAK 281
Query: 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
+++S L D Y+KCG + +A +F+ +++K +VSW S++ G+ +G ++A+ FE
Sbjct: 282 L-VNISTALADMYSKCGSVETARLIFD--GMDQKTVVSWNSMMDGYVQNGEPEKAIAVFE 338
Query: 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
+M + + P VT + L+AC+ G +E G KF K V++ + DI LI M +
Sbjct: 339 KMLEEGIDPTGVTIMEALHACADLGDLERG-KFVHKFVDQLNLGSDISVMNSLISMYSKC 397
Query: 238 GRLEQAEKV 246
R++ A +
Sbjct: 398 KRVDIASDI 406
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 137/310 (44%), Gaps = 28/310 (9%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
+++ K+G + A +FE + + + ++ GY + + ALA RM + +P
Sbjct: 87 LVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRM-RYDDVKP 145
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
+ N D++ + IHG F A ++ +++ YAKC I A K+
Sbjct: 146 VVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAA-NVFAMTGVVNMYAKCRQIDDAYKM 204
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202
F+ + ++LVSW +II+GF+ +G K+A+E RMQ +P+ +T ++VL A + G
Sbjct: 205 FD--RMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVG 262
Query: 203 LVEEGLKF--------FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L+ G F K+V L DM + G +E A + G+ +
Sbjct: 263 LLMVGKSIHGYAIRAGFAKLVNISTALA---------DMYSKCGSVETARLIFDGMDQK- 312
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER-- 312
VV W +++ +G E V K+L E G V + L GD ER
Sbjct: 313 -TVVSWNSMMDGYVQNGEPEKAIAVFEKML--EEGIDPTGVTIMEALHACADLGDLERGK 369
Query: 313 -LRRVVDERN 321
+ + VD+ N
Sbjct: 370 FVHKFVDQLN 379
>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
Length = 720
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/320 (36%), Positives = 193/320 (60%), Gaps = 8/320 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
ER+L + +++ + GEL ++LF+ M +++VSW +I GY + + AL +FR+
Sbjct: 278 ERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQ 337
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF--NAFHIHVSNCLIDTYA 131
MV + I+++ VF A +R + H Y K +AF ++ LID YA
Sbjct: 338 MVLYG-IQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAF---IACSLIDMYA 393
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191
K G I + K+F ++ K+ SW ++I G+ +HG+ KEA++ FE MQ+ P+ +TF
Sbjct: 394 KNGSITQSSKVFN--GLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTF 451
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
L VL AC+H GL+ EGL++ D+M + P++KHY C+IDMLGRAG+L++A +V +
Sbjct: 452 LGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEM 511
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
SE +V +W++LL +C H N+EMGE+V K+ E+E +YVL+ N+ AG+ ++ D
Sbjct: 512 SEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVR 571
Query: 312 RLRRVVDERNALKFPGRSLV 331
++R+ ++E + K G S +
Sbjct: 572 KVRQRMNEMSLRKDAGCSWI 591
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 98/187 (52%), Gaps = 4/187 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
++ LV N ++ K G + A+ +F+ +NVVSW ++ G++ ++G + R+
Sbjct: 74 DKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQ 133
Query: 74 MVA-CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK 132
M+A E + E+TIL P + + + + +H Y K+ F ++ V+N + +YAK
Sbjct: 134 MLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEF-VYNELVANAFVASYAK 192
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
CG + A ++F I K + SW ++I G A + +++ +M+ L P+ T
Sbjct: 193 CGSLSYAQRVFHGI--RSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVC 250
Query: 193 SVLNACS 199
S+L+ACS
Sbjct: 251 SLLSACS 257
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 7/153 (4%)
Query: 151 KNLVSWTSIISGFAMHGMGKEAV----ENFERMQKVVLKPNRVTFLSVLNACSHGGLVEE 206
+N VSW S+I F+ +G +E+ E E P+ T ++VL C+ +
Sbjct: 1 RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60
Query: 207 GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
G K + + ++ L+DM + G + A+ + + NVV W T++G
Sbjct: 61 G-KGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFK--MNNNKNVVSWNTMVGG 117
Query: 267 CSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
S G+ V R++L D V + N
Sbjct: 118 FSAEGDTHGTFDVLRQMLAGGEDVKADEVTILN 150
>gi|20160775|dbj|BAB89716.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|125573261|gb|EAZ14776.1| hypothetical protein OsJ_04704 [Oryza sativa Japonica Group]
Length = 916
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/320 (35%), Positives = 189/320 (59%), Gaps = 7/320 (2%)
Query: 12 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALF 71
L E NL N ++T ++G+ E A +F + RN+ SW +I G+ + N A +
Sbjct: 603 LIEFNLRVKNALLTMYFRFGDTESAELIFSSLVGRNLCSWNCMISGFAQNNEGLRAFQFY 662
Query: 72 RRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYA 131
++M E EP+EI+I+ + A Q GD+R + IHG+ + G ++ +S L+D Y+
Sbjct: 663 KKM---EDFEPNEISIVGIICACTQLGDLRQGKNIHGHVVRFGLQT-NVFISASLVDMYS 718
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191
KCG + ++++FE S K++ W S+IS F HG+G +++E F +M +K R TF
Sbjct: 719 KCGRLDISIRVFE--SSAEKSIACWNSMISAFGFHGLGLKSIEIFWKMNNSGVKATRSTF 776
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
+++L+ACSH GL +EGLK++ M+E ++P +H+ C++DMLGRAGRL++A K +P
Sbjct: 777 IALLSACSHSGLTDEGLKYYHLMIEHFGIIPTPEHHVCVVDMLGRAGRLQEAHKFVESLP 836
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
S+ + VW LL ACS ++M E V + +L +E G YV M N+ A + A
Sbjct: 837 SKQAH-GVWGALLSACSKKSELKMCESVAKHLLCLEPENSGYYVTMSNLYAYQDMWSGAV 895
Query: 312 RLRRVVDERNALKFPGRSLV 331
++R ++ ++ +K GRS++
Sbjct: 896 QVRDILQDKGLMKPRGRSII 915
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 124/248 (50%), Gaps = 10/248 (4%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG--ALALFRRMVACE 78
N ++ +K + AR LF MP R+++SW +I GY+R N S G A A+F+ +++ E
Sbjct: 407 NSLLDLYMKCNDPSTARILFRTMPMRDLISWNTMISGYSR-NDSLGEEAKAMFKGLLS-E 464
Query: 79 YTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFS 138
+ T++AV P+ + D+ + +H + K GF + +N LI Y CG +
Sbjct: 465 GLSCTLSTVVAVIPSCFCPQDLNFGKSVHSFILKYGFLT-GVSAANSLIHMYICCGDSLA 523
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK-VVLKPNRVTFLSVLNA 197
A L E I+ +++SW + I G +G+ +A+E F+ M + L P+ +T +SVL+
Sbjct: 524 AFSLLESIT-PISDIISWNTAIVGCVQNGLYGDALEAFQFMHSTLTLNPDSITLVSVLSV 582
Query: 198 CSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNV 257
C + L G K M + + +++ L+ M R G E AE + S + N+
Sbjct: 583 CGNLKLQSLG-KSIHCMALKRLIEFNLRVKNALLTMYFRFGDTESAELIFSSLVGR--NL 639
Query: 258 VVWRTLLG 265
W ++
Sbjct: 640 CSWNCMIS 647
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 124/265 (46%), Gaps = 9/265 (3%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ +L WN ++ K G+ + +F+ MP R+ SW ++ G + + F+
Sbjct: 196 DTDLSLWNTLMDMYAKCGDFYSSEVVFQRMPYRDTTSWNSMVSGSLFNGLAEISAYYFKE 255
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNC-QLIHGYGEKRGFNAFHIHVSNCLIDTYAK 132
MV + + E+++ V A D+ + + +H K G+ V+N LI Y +
Sbjct: 256 MVRSSF-QADEVSLSCVLSACSHLKDLFSFGESVHSSVIKLGYEDTTSSVANSLITFYYE 314
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
G +A ++F +S KNLV+W ++I G + EA+ F+ M+ +P+ T +
Sbjct: 315 LGFPEAAEEVF--LSTSNKNLVTWNAMIKGLVENDRVNEAMCMFQEMRSKN-QPDVATLV 371
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
++++AC GL+ EG + ++++ + + L+D+ + A + +P
Sbjct: 372 TIISACGDHGLLPEGKEVHGYIIKKGHIYEECSVGNSLLDLYMKCNDPSTARILFRTMP- 430
Query: 253 EITNVVVWRTLLGACSFHGNVEMGE 277
+ +++ W T++ + N +GE
Sbjct: 431 -MRDLISWNTMISG--YSRNDSLGE 452
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 117/255 (45%), Gaps = 13/255 (5%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +IT + G E A +F +N+V+W +I G +R N A+ +F+ M +
Sbjct: 306 NSLITFYYELGFPEAAEEVFLSTSNKNLVTWNAMIKGLVENDRVNEAMCMFQEMRS--KN 363
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+P T++ + A +G + + +HGY K+G V N L+D Y KC +A
Sbjct: 364 QPDVATLVTIISACGDHGLLPEGKEVHGYIIKKGHIYEECSVGNSLLDLYMKCNDPSTAR 423
Query: 141 KLFEDISVERKNLVSWTSIISGFAMH-GMGKEAVENFERMQKVVLKPNRVTFLSVLNACS 199
LF + + ++L+SW ++ISG++ + +G+EA F+ + L T ++V+ +C
Sbjct: 424 ILFRTMPM--RDLISWNTMISGYSRNDSLGEEAKAMFKGLLSEGLSCTLSTVVAVIPSC- 480
Query: 200 HGGLVEEGLKF---FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256
+ L F + + L + LI M G A + I + I++
Sbjct: 481 ---FCPQDLNFGKSVHSFILKYGFLTGVSAANSLIHMYICCGDSLAAFSLLESI-TPISD 536
Query: 257 VVVWRTLLGACSFHG 271
++ W T + C +G
Sbjct: 537 IISWNTAIVGCVQNG 551
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 93/199 (46%), Gaps = 11/199 (5%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
LK G+ L + P R V IT + ++ A +F+E +++ W I T
Sbjct: 90 LKSGAVL--DPPVRTSV-----ITAYSRVRDVCSALQVFDEAAAPDLILWNAAISALTLN 142
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R A+ LFR MV S +++ + + + + HG KR + +
Sbjct: 143 CRYGDAVVLFRWMVDVLGVIDST-SMVIMLSGASRARSLEHGIAFHGMALKRCLDT-DLS 200
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N L+D YAKCG +S+ +F+ + ++ SW S++SG +G+ + + F+ M +
Sbjct: 201 LWNTLMDMYAKCGDFYSSEVVFQRM--PYRDTTSWNSMVSGSLFNGLAEISAYYFKEMVR 258
Query: 182 VVLKPNRVTFLSVLNACSH 200
+ + V+ VL+ACSH
Sbjct: 259 SSFQADEVSLSCVLSACSH 277
>gi|414872719|tpg|DAA51276.1| TPA: methyltransferase small domain protein [Zea mays]
Length = 601
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/328 (32%), Positives = 186/328 (56%), Gaps = 5/328 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ +F E E++ ++WN M++G V G L+ A F E P R+++SW ++ GY R
Sbjct: 275 MNAAKTIFGETGEKDAISWNTMVSGFVNAGMLDLASRFFSEAPSRDLISWNALLAGYARY 334
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
N + LF MVA ++T + + A G + + + +HG+ K F+
Sbjct: 335 KSFNEVMKLFHDMVA-SCVNLDKVTAVTLISAATGKGSLNHAKSVHGWVVKE-FDHQDAF 392
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+++ L+D Y KCG + +A +FE K++ WT++ISG A +G G EA+E F +MQ
Sbjct: 393 LASALVDMYCKCGNVKTAYYVFEK--ALDKDVTLWTAMISGLAFNGHGTEALELFCKMQT 450
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
V+ PN VT L+VL+ACSH GL++EG K FD M + + P I+H+GC++D+L R+GRL
Sbjct: 451 EVVAPNGVTLLAVLSACSHSGLLDEGCKIFDAMKQRYSIEPGIEHFGCMVDLLARSGRLI 510
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A +A +P + +W ++L A N+E+ E ++++L ++ G YVL+ N+
Sbjct: 511 DALALARRMPMRPSR-SIWGSILNASLAGQNIEVAEIASKELLRLDPAEEGGYVLLSNLH 569
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRS 329
A + ++++R++++ + K G S
Sbjct: 570 AAGGHWNHSDKVRQIMERKGLRKLAGAS 597
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 113/272 (41%), Gaps = 15/272 (5%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I + G++E A +F + VS ++ GY + AL FR M A
Sbjct: 160 NSLIKMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYVNEGCTLKALWFFRDM-ASRGI 218
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH-IHVSNCLIDTYAKCGCIFSA 139
+ T +A+ + + + +HG +R H + + N L+D YAKCG + +A
Sbjct: 219 VVDQYTAVALLTCCGRLKNELIGRSVHGVIVRRMDAGDHGLILVNALLDMYAKCGRMNAA 278
Query: 140 LKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR--VTFLSVLNA 197
+F + K+ +SW +++SGF GM A F P+R +++ ++L
Sbjct: 279 KTIFGETG--EKDAISWNTMVSGFVNAGMLDLASRFFSE------APSRDLISWNALLAG 330
Query: 198 CSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI--T 255
+ E +K F MV C L + + G+ G L A+ V + E
Sbjct: 331 YARYKSFNEVMKLFHDMVASCVNLDKVTAVTLISAATGK-GSLNHAKSVHGWVVKEFDHQ 389
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEME 287
+ + L+ GNV+ V K L+ +
Sbjct: 390 DAFLASALVDMYCKCGNVKTAYYVFEKALDKD 421
>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Cucumis sativus]
Length = 849
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/311 (36%), Positives = 181/311 (58%), Gaps = 5/311 (1%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I+ + G ++ AR F+ + +N++S+ +ID Y + S AL LF + +
Sbjct: 415 NSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNE-IEDQGM 473
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
S T ++ G + + IH K G + V N LI Y++CG I SA
Sbjct: 474 GASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLK-LNQSVCNALISMYSRCGNIESAF 532
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
++FED+ E +N++SWTSII+GFA HG +A+E F +M + ++PN VT+++VL+ACSH
Sbjct: 533 QVFEDM--EDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSH 590
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
GLV EG K F M E V+P ++HY C++D+LGR+G L +A + + +P + + +VW
Sbjct: 591 VGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYK-ADALVW 649
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320
RT LGAC HGN+E+G+ + I+E E Y+L+ N+ A ++ + +R+ + E+
Sbjct: 650 RTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEK 709
Query: 321 NALKFPGRSLV 331
N +K G S V
Sbjct: 710 NLIKEAGCSWV 720
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 133/286 (46%), Gaps = 21/286 (7%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G+L A +FE+MP RN V+WT +I + + A+ LF M+ Y EP T+ V
Sbjct: 219 GDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGY-EPDRFTLSGV 277
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC---GCIFSALKLFEDIS 147
A + Q +H + G V CLI+ YAKC G + +A K+F+ I
Sbjct: 278 ISACANMELLLLGQQLHSQAIRHGLTLDRC-VGCCLINMYAKCSVDGSMCAARKIFDQIL 336
Query: 148 VERKNLVSWTSIISGFAMH-GMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEE 206
N+ SWT++I+G+ G +EA++ F M + PN TF S L AC++ +
Sbjct: 337 --DHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRI 394
Query: 207 GLKFFDKMVEECEVLPDIKHYGC----LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
G + F V+ C LI M R+GR++ A K A I E N++ + T
Sbjct: 395 GEQVFTHAVK-----LGFSSVNCVANSLISMYARSGRIDDARK-AFDILFE-KNLISYNT 447
Query: 263 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308
++ A + + N E + +I ++G G ++L+G G
Sbjct: 448 VIDAYAKNLNSEEALELFNEI--EDQGMGASAFTFASLLSGAASIG 491
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 6/143 (4%)
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N LI Y+KCG A +F+ + R +L+SW++++S FA + MG A+ F M +
Sbjct: 105 NSLISLYSKCGQWEKATSIFQLMGSSR-DLISWSAMVSCFANNNMGFRALLTFVDMIENG 163
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC-LIDMLGRA-GRLE 241
PN F + ACS V G F +V+ + D+ GC LIDM + G L
Sbjct: 164 YYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVC-VGCGLIDMFVKGRGDLV 222
Query: 242 QAEKVASGIPSEITNVVVWRTLL 264
A KV +P N V W ++
Sbjct: 223 SAFKVFEKMPER--NAVTWTLMI 243
>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
Length = 855
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/328 (31%), Positives = 184/328 (56%), Gaps = 4/328 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L++ +F + ER++V+W MIT + G + AR F+ M RN ++W ++ Y +
Sbjct: 412 LQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQH 471
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
L ++ M++ + P +T + +F G + I G+ K G ++
Sbjct: 472 GAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGL-ILNVS 530
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V+N I Y+KCG I A KLF+ ++ K++VSW ++I+G++ HGMGK+A + F+ M
Sbjct: 531 VANAAITMYSKCGRISEAQKLFDLLN--GKDVVSWNAMITGYSQHGMGKQAAKTFDDMLS 588
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KP+ +++++VL+ CSH GLV+EG +FD M + P ++H+ C++D+LGRAG L
Sbjct: 589 KGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLT 648
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A+ + +P + T VW LL AC HGN E+ E + + E++ G Y+L+ I
Sbjct: 649 EAKDLIDKMPMKPT-AEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIY 707
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRS 329
+ + D+ ++R+++ ++ K PG S
Sbjct: 708 SDAGKSDDSAQVRKLMRDKGIKKNPGYS 735
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 88/339 (25%), Positives = 151/339 (44%), Gaps = 49/339 (14%)
Query: 6 SKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 65
+K+ LP+ + + +I K G + A+ +F + RN VSWT +I G + +
Sbjct: 284 AKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFS 343
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
++ LF +M A E + + + + D+ + +H K G N I VSN
Sbjct: 344 KSVELFNQMRA-ELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNR-AIVVSNS 401
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
LI YAKCG + +A +F +S +++VSWTS+I+ ++ G +A E F+ M
Sbjct: 402 LISLYAKCGDLQNAEFVFSSMS--ERDIVSWTSMITAYSQIGNIIKAREFFDGMA----T 455
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY-----GC----------- 229
N +T+ ++L A G E+GLK + M+ + +V PD Y GC
Sbjct: 456 RNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQ 515
Query: 230 -------------------LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
I M + GR+ +A+K+ + + +VV W ++ S H
Sbjct: 516 IIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGK--DVVSWNAMITGYSQH 573
Query: 271 GNVEMGERVTRKILEM-ERGYGGDYVLMYNILAGVWRYG 308
G MG++ + +M +G DY+ +L+G G
Sbjct: 574 G---MGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSG 609
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 140/306 (45%), Gaps = 34/306 (11%)
Query: 2 LKDGSKLF-DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L D +L ++ E N++T N+M+ G K G L A LF+ MP R+V SW ++ +R
Sbjct: 71 LSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSR 130
Query: 61 MN---RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIH----GYGE-- 111
S GAL C P + + F W + DV + GY +
Sbjct: 131 PAGSWMSCGAL-------GCRELAPQLLGLFWKFD-FWGDPDVETALVDMFVRCGYVDFA 182
Query: 112 KRGFNAFH---IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 168
R F+ I N ++ YAK I A++ FED++ +++VSW +I+ + G
Sbjct: 183 SRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMA--ERDVVSWNMMIAALSQSGR 240
Query: 169 GKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY- 227
+EA+ M + ++ + T+ S L AC+ + G + K++ LP I Y
Sbjct: 241 VREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRS---LPQIDPYV 297
Query: 228 -GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC----SFHGNVEMGERVTRK 282
LI++ + G ++A++V + + N V W L+G F +VE+ ++ +
Sbjct: 298 ASALIELYAKCGSFKEAKRVFNSLQDR--NSVSWTVLIGGSLQYECFSKSVELFNQMRAE 355
Query: 283 ILEMER 288
++ +++
Sbjct: 356 LMAIDQ 361
>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 109/319 (34%), Positives = 187/319 (58%), Gaps = 16/319 (5%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFDE+ +++ W +++G KWG++ A LF +MP +N VSW+ +I GY R + + A
Sbjct: 252 LFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEA 311
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L F +M+ P + T + A +++ + +HGY + F I VS+ LI
Sbjct: 312 LDYFTKMMKFG-INPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSS-LI 369
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y+KCG + ++ +F + ++++V W ++IS A +G G++A++ F M + LKP+
Sbjct: 370 DMYSKCGMLEASCCVFHLMG-NKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPD 428
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
R+TF+ +L+ACSH GLV+EGL+FF M + V PD +HY CLID+LGRAG +
Sbjct: 429 RITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGRAGCFVE----- 483
Query: 248 SGIPSEITNVV------VWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+ +E+ N+ VW LLG C H N+E+G +V +++E++ YV + ++
Sbjct: 484 --LVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLY 541
Query: 302 AGVWRYGDAERLRRVVDER 320
A + ++ E++R ++DE+
Sbjct: 542 AFLGKWESVEKVRELMDEK 560
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 161/340 (47%), Gaps = 47/340 (13%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ K+FD++ RNL +WN M+ G K G++ AR LF+ M ++VVSW I+ Y +
Sbjct: 116 EARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGC 175
Query: 64 SNGALALFR--RMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
N A+ L+R R + + S +L + + +++ + +HG GF + ++
Sbjct: 176 FNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKL---KELQLAKQVHGQVLVAGFLS-NLV 231
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVE-----------------------------RKN 152
+S+ ++D YAKCG + A LF+++ V+ KN
Sbjct: 232 LSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKN 291
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
VSW+++ISG+A + +G EA++ F +M K + P + TF S L AC+ ++ G +
Sbjct: 292 PVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHG 351
Query: 213 KMVE---ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
++ C + LIDM + G LE A + +VVVW T++ A +
Sbjct: 352 YLIRTYFRCNTIV----VSSLIDMYSKCGMLE-ASCCVFHLMGNKQDVVVWNTMISALAQ 406
Query: 270 HGNVEMGERVTRKILEM-ERGYGGDYVLMYNILAGVWRYG 308
+G+ GE+ + +M E G D + IL+ G
Sbjct: 407 NGH---GEKAMQMFNDMVESGLKPDRITFIVILSACSHSG 443
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 165
+H + + GF V+N LI Y +CG A K+F+ +SV +NL SW +++G+A
Sbjct: 84 VHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSV--RNLYSWNHMLAGYAK 141
Query: 166 HGMGKEAVENFER-MQKVVLKPNRVTFLSVLNAC 198
G A + F+R M+K V+ N + C
Sbjct: 142 LGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGC 175
>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 615
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/310 (36%), Positives = 187/310 (60%), Gaps = 6/310 (1%)
Query: 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTE 81
+I + G+ AR++F + VVS+ +I R +R AL LFR M A + +
Sbjct: 182 TLINMYAECGDARAARTMFGRVDGECVVSYNAMITAAVRSSRPGEALVLFREMQA-KGLK 240
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
+ +T+++V A G + + IH Y K ++ + V+ LID Y KCG + A+
Sbjct: 241 LTSVTLISVLSACALLGALELGRWIHEYVRKVQLDSL-VKVNTALIDMYGKCGSLEDAIS 299
Query: 142 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHG 201
+F+ +E ++ +W+ +I +A H G+EA+ FE M+K +KP+ VTFL VL ACSH
Sbjct: 300 VFQ--GMESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYACSHS 357
Query: 202 GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWR 261
GLV EGL++FD M E ++P IKHYGC+ D+L R+G+L++A + +P + T ++WR
Sbjct: 358 GLVSEGLQYFDSM-REFGLVPGIKHYGCVADLLARSGQLDRAYEFIDELPIKPT-AILWR 415
Query: 262 TLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321
TLL AC G+ ++G++V +ILE++ +GGDYV+ N+ A R+ + R+R++++E+
Sbjct: 416 TLLSACGSRGDADLGKQVFERILELDDSHGGDYVIFSNLCANTGRWEEMNRVRKLMNEKG 475
Query: 322 ALKFPGRSLV 331
+K PG S +
Sbjct: 476 VVKVPGCSSI 485
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 119/253 (47%), Gaps = 15/253 (5%)
Query: 26 GLVKWGELEYARSLFEEMPCRNVVSW-TGIIDGYTRMNRSNGALA-------LFRRMVAC 77
G K +L YAR +F+ +P V W ++ GY R + + GA +F RM+
Sbjct: 77 GAAKPAQLSYARQVFDRIPGPGDVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLE- 135
Query: 78 EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIF 137
E P T +++ A + HG K G A H +V LI+ YA+CG
Sbjct: 136 EGVAPDTYTFVSLLKACAAARAGEEGRQAHGVAVKVG-AAEHEYVLPTLINMYAECGDAR 194
Query: 138 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197
+A +F V+ + +VS+ ++I+ EA+ F MQ LK VT +SVL+A
Sbjct: 195 AARTMFG--RVDGECVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSA 252
Query: 198 CSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNV 257
C+ G +E G ++ + V + ++ +K LIDM G+ G LE A V G+ S +
Sbjct: 253 CALLGALELG-RWIHEYVRKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGMESR--DR 309
Query: 258 VVWRTLLGACSFH 270
W ++ A + H
Sbjct: 310 QAWSVMIVAYANH 322
>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
trifida]
gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
Length = 575
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 118/313 (37%), Positives = 189/313 (60%), Gaps = 8/313 (2%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I GE A +F++MP R+VVSWT IIDG+ +R A+ LF M+
Sbjct: 140 NALIHLYSVSGEPNLAYKVFDKMPDRDVVSWTSIIDGFVDNDRPIEAIRLFTHMIE-NGI 198
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
EP+E+T+ +V A G + + IH + +++ F++ + +VS LID YAKCGCI AL
Sbjct: 199 EPNEVTVASVLRACADTGALNTGERIHSFVKEKNFSS-NANVSTALIDMYAKCGCIDGAL 257
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
++F++ K++ WT+II+G A HG+ +A+E FE M+K +K + +VL+A +
Sbjct: 258 EVFDE--TLEKDVYVWTAIIAGLASHGLCMKAIEFFENMKKSDVKMDERAITAVLSAYRN 315
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
GLV EGL FF ++ ++ ++ P I+HYGC++DML RAGRL+ AE+ +P E + V+W
Sbjct: 316 AGLVSEGLLFFRRL-KKHKIKPTIQHYGCVVDMLTRAGRLKDAEEFIRKMPIE-PDAVLW 373
Query: 261 RTLLGACSFHGNVEMGERVTR--KILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVD 318
RTL+ C G+VE ER+ R ++L M+ G YVL+ N+ A ++ + + R ++
Sbjct: 374 RTLIWGCKILGDVERSERLVRELELLNMDSRDTGSYVLLENVYAATGKWEEKAKTRELMY 433
Query: 319 ERNALKFPGRSLV 331
+R +K P S +
Sbjct: 434 QRGLMKPPACSRI 446
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 121/287 (42%), Gaps = 26/287 (9%)
Query: 25 TGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM-----VACEY 79
+ L G+L YAR + + N + +I Y+ A LF M +
Sbjct: 37 SALSPSGDLNYARHILRTLHTPNSFYYNTMIRAYSDSTDPTRAFTLFLYMQNPDDASVAV 96
Query: 80 TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSA 139
P T V A ++G R + IHG K G + +++N LI Y+ G A
Sbjct: 97 PRPDHFTYPFVLKACSKSGHARFGKQIHGLVFKSGVGSDR-YINNALIHLYSVSGEPNLA 155
Query: 140 LKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS 199
K+F+ + +++VSWTSII GF + EA+ F M + ++PN VT SVL AC+
Sbjct: 156 YKVFDKMP--DRDVVSWTSIIDGFVDNDRPIEAIRLFTHMIENGIEPNEVTVASVLRACA 213
Query: 200 HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVV 259
G + G + V+E + LIDM + G ++ A +V + +V V
Sbjct: 214 DTGALNTGERIH-SFVKEKNFSSNANVSTALIDMYAKCGCIDGALEVFDETLEK--DVYV 270
Query: 260 WRTLLGACSFHG---------------NVEMGERVTRKILEMERGYG 291
W ++ + HG +V+M ER +L R G
Sbjct: 271 WTAIIAGLASHGLCMKAIEFFENMKKSDVKMDERAITAVLSAYRNAG 317
>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 109/319 (34%), Positives = 187/319 (58%), Gaps = 16/319 (5%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFDE+ +++ W +++G KWG++ A LF +MP +N VSW+ +I GY R + + A
Sbjct: 252 LFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEA 311
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L F +M+ P + T + A +++ + +HGY + F I VS+ LI
Sbjct: 312 LDYFTKMMKFG-INPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSS-LI 369
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D Y+KCG + ++ +F + ++++V W ++IS A +G G++A++ F M + LKP+
Sbjct: 370 DMYSKCGMLEASCCVFHLMG-NKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPD 428
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
R+TF+ +L+ACSH GLV+EGL+FF M + V PD +HY CLID+LGRAG +
Sbjct: 429 RITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYACLIDLLGRAGCFVE----- 483
Query: 248 SGIPSEITNVV------VWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+ +E+ N+ VW LLG C H N+E+G +V +++E++ YV + ++
Sbjct: 484 --LVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLY 541
Query: 302 AGVWRYGDAERLRRVVDER 320
A + ++ E++R ++DE+
Sbjct: 542 AFLGKWESVEKVRELMDEK 560
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 161/340 (47%), Gaps = 47/340 (13%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ K+FD++ RNL +WN M+ G K G++ AR LF+ M ++VVSW I+ Y +
Sbjct: 116 EARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGC 175
Query: 64 SNGALALFR--RMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
N A+ L+R R + + S +L + + +++ + +HG GF + ++
Sbjct: 176 FNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKL---KELQLAKQVHGQVLVAGFLS-NLV 231
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVE-----------------------------RKN 152
+S+ ++D Y+KCG + A LF+++ V+ KN
Sbjct: 232 LSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKN 291
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
VSW+++ISG+A + +G EA++ F +M K + P + TF S L AC+ ++ G +
Sbjct: 292 PVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHG 351
Query: 213 KMVE---ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
++ C + LIDM + G LE A + +VVVW T++ A +
Sbjct: 352 YLIRTYFRCNTIV----VSSLIDMYSKCGMLE-ASCCVFHLMGNKQDVVVWNTMISALAQ 406
Query: 270 HGNVEMGERVTRKILEM-ERGYGGDYVLMYNILAGVWRYG 308
+G+ GE+ + +M E G D + IL+ G
Sbjct: 407 NGH---GEKAMQMFNDMVESGLKPDRITFIVILSACSHSG 443
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 165
+H + + GF V+N LI Y +CG A K+F+ +SV +NL SW +++G+A
Sbjct: 84 VHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSV--RNLYSWNHMLAGYAK 141
Query: 166 HGMGKEAVENFER-MQKVVLKPNRVTFLSVLNAC 198
G A + F+R M+K V+ N + C
Sbjct: 142 LGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGC 175
>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
Length = 865
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 104/328 (31%), Positives = 184/328 (56%), Gaps = 4/328 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L++ +F + ER++V+W MIT + G + AR F+ M RN ++W ++ Y +
Sbjct: 422 LQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQH 481
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
L ++ M++ + P +T + +F G + I G+ K G ++
Sbjct: 482 GAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGL-ILNVS 540
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V+N I Y+KCG I A KLF+ ++ K++VSW ++I+G++ HGMGK+A + F+ M
Sbjct: 541 VANAAITMYSKCGRISEAQKLFDLLN--GKDVVSWNAMITGYSQHGMGKQAAKTFDDMLS 598
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KP+ +++++VL+ CSH GLV+EG +FD M + P ++H+ C++D+LGRAG L
Sbjct: 599 KGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLT 658
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A+ + +P + T VW LL AC HGN E+ E + + E++ G Y+L+ I
Sbjct: 659 EAKDLIDKMPMKPT-AEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIY 717
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRS 329
+ + D+ ++R+++ ++ K PG S
Sbjct: 718 SDAGKSDDSAQVRKLMRDKGIKKNPGYS 745
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 142/324 (43%), Gaps = 44/324 (13%)
Query: 2 LKDGSKLF-DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L D +L ++ E N++T N+M+ G K G L A LF+ MP R+V SW ++ GY +
Sbjct: 55 LSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQ 114
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPA---------------------IWQNGD 99
R L F M + P+ T V + W + D
Sbjct: 115 ARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPD 174
Query: 100 VRNCQLIH----GYGE--KRGFNAFH---IHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
V + GY + R F+ I N ++ YAK I A++ FED++
Sbjct: 175 VETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMA--E 232
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
+++VSW +I+ + G +EA+ M + ++ + T+ S L AC+ + G +
Sbjct: 233 RDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQL 292
Query: 211 FDKMVEECEVLPDIKHY--GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC- 267
K++ LP I Y LI++ + G ++A++V + + N V W L+G
Sbjct: 293 HAKVIRS---LPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDR--NSVSWTVLIGGSL 347
Query: 268 ---SFHGNVEMGERVTRKILEMER 288
F +VE+ ++ +++ +++
Sbjct: 348 QYECFSKSVELFNQMRAELMAIDQ 371
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 143/343 (41%), Gaps = 80/343 (23%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
K+ ++F+ L +RN V+W V+I G +++ + LF +M + ID +
Sbjct: 321 FKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMA-----IDQFALA 375
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+G F RM C + +H K G N I
Sbjct: 376 TLISGC---FNRMDLCLGRQ------------------------LHSLCLKSGHNR-AIV 407
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VSN LI YAKCG + +A +F +S +++VSWTS+I+ ++ G +A E F+ M
Sbjct: 408 VSNSLISLYAKCGDLQNAEFVFSSMS--ERDIVSWTSMITAYSQIGNIIKAREFFDGMD- 464
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY-----GC------- 229
N +T+ ++L A G E+GLK + M+ + +V PD Y GC
Sbjct: 465 ---TRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANK 521
Query: 230 -----------------------LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
I M + GR+ +A+K+ + + +VV W ++
Sbjct: 522 LGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGK--DVVSWNAMITG 579
Query: 267 CSFHGNVEMGERVTRKILEM-ERGYGGDYVLMYNILAGVWRYG 308
S HG MG++ + +M +G DY+ +L+G G
Sbjct: 580 YSQHG---MGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSG 619
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 129/275 (46%), Gaps = 19/275 (6%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
S+LF ++ + N M+ G K +++A FE+M R+VVSW +I ++ R
Sbjct: 192 ASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRV 251
Query: 65 NGALALF----RRMVACEYTE-PSEITILA-VFPAIWQNGDVRNCQLIHGYGEKRGFNAF 118
AL L R+ V + T S +T A +F W G + ++I R
Sbjct: 252 REALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGW--GKQLHAKVI------RSLPQI 303
Query: 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER 178
+V++ LI+ YAKCG A ++F S++ +N VSWT +I G + ++VE F +
Sbjct: 304 DPYVASALIELYAKCGSFKEAKRVFN--SLQDRNSVSWTVLIGGSLQYECFSKSVELFNQ 361
Query: 179 MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
M+ ++ ++ ++++ C + + G + ++ I LI + + G
Sbjct: 362 MRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRA-IVVSNSLISLYAKCG 420
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
L+ AE V S + ++V W +++ A S GN+
Sbjct: 421 DLQNAEFVFSSMSER--DIVSWTSMITAYSQIGNI 453
>gi|115436706|ref|NP_001043111.1| Os01g0390600 [Oryza sativa Japonica Group]
gi|21328171|dbj|BAC00748.1| pentatricopeptide (PPR) repeat-containing-like protein [Oryza
sativa Japonica Group]
gi|113532642|dbj|BAF05025.1| Os01g0390600 [Oryza sativa Japonica Group]
Length = 657
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 107/330 (32%), Positives = 182/330 (55%), Gaps = 4/330 (1%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
F+ F + ++ +WN ++ L++ + AR LF++MP R+ +SW+ +I GY +
Sbjct: 326 FIDHAQMQFKLSDKSHVASWNALMASLLRRNLVHEARQLFDDMPERDTISWSTLISGYVQ 385
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
SN AL +F M+ EP+EIT+ + A+ +G + + IH Y R
Sbjct: 386 SGNSNMALQIFCSMLDAG-VEPNEITLASALSAVANSGTLGQARWIHDYIISRSIQ-LTD 443
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+S LI+ YAKCG I A++LF + + ++ W SII A+HG ++E F ++Q
Sbjct: 444 KLSAGLINVYAKCGSIAEAVQLFNHVKDKSISVSPWNSIICNLAIHGYVNMSLELFSQLQ 503
Query: 181 KVV-LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+KPN +T+L VLNAC H G+V EG + F+ M ++ + P+IKHYGC++D+L RAG
Sbjct: 504 STTHIKPNSITYLGVLNACCHAGMVAEGKRQFESMRQQYGIQPEIKHYGCMVDLLCRAGY 563
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
LE+AE + +P + +VV W +L A GNV +GE+ ++ +++ +G + + N
Sbjct: 564 LEEAELLIKTMPMK-ADVVAWGCILAAARTQGNVALGEKAAEELSKLDPSHGASKIALSN 622
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRS 329
+ A + + +R+ + N + G S
Sbjct: 623 LYADAGHWSNVSVVRKELQNENLERLTGSS 652
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 135/301 (44%), Gaps = 35/301 (11%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+F+ +P+RN VTWN M+ VK G + A +F +P R+ VSW +IDGY +
Sbjct: 199 SIFELMPDRNTVTWNTMLNCYVKAGMINMAAEVFGVIPERDEVSWLTMIDGYMCADFLLQ 258
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL + MV +E+ ++ + A ++ V Q +H K GF+A H V L
Sbjct: 259 ALRTYVAMVGTVGIRANEVILVGLVKACSRHSAVSEGQQLHTVILKNGFDA-HAFVQATL 317
Query: 127 IDTYAKC-------------------------------GCIFSALKLFEDISVERKNLVS 155
I Y C + A +LF+D+ ++ +S
Sbjct: 318 IHYYGSCDFIDHAQMQFKLSDKSHVASWNALMASLLRRNLVHEARQLFDDM--PERDTIS 375
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215
W+++ISG+ G A++ F M ++PN +T S L+A ++ G + + D ++
Sbjct: 376 WSTLISGYVQSGNSNMALQIFCSMLDAGVEPNEITLASALSAVANSGTLGQARWIHDYII 435
Query: 216 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEM 275
L D K LI++ + G + +A ++ + + + +V W +++ + HG V M
Sbjct: 436 SRSIQLTD-KLSAGLINVYAKCGSIAEAVQLFNHVKDKSISVSPWNSIICNLAIHGYVNM 494
Query: 276 G 276
Sbjct: 495 S 495
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 109/211 (51%), Gaps = 11/211 (5%)
Query: 8 LFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 65
LFDE+P R+ N++++ L + G LE A+ L EMP R+ VS+T +I +R
Sbjct: 65 LFDEIPPLLRDATAHNILLSALARAGRLERAQCLLAEMPQRDAVSFTTVISALSRSGHPE 124
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIW-QNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
ALA+FR M+ E +P+E+T+ V A+ +G HG +RG + F I +N
Sbjct: 125 RALAVFRDMLT-EAVQPNEVTLAEVLTAMACDHGAPAPVGAAHGVAVRRGLDGFVIVATN 183
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
L+ Y + SA +FE + +N V+W ++++ + GM A E F V+
Sbjct: 184 -LVHAYGAVSQVPSARSIFELM--PDRNTVTWNTMLNCYVKAGMINMAAEVF----GVIP 236
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215
+ + V++L++++ + + L+ + MV
Sbjct: 237 ERDEVSWLTMIDGYMCADFLLQALRTYVAMV 267
>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 654
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/314 (35%), Positives = 190/314 (60%), Gaps = 10/314 (3%)
Query: 21 NVMITGL---VKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV-- 75
+VM T L ++G + YA S+F MP +N+VSW+ +I Y + AL LF+ M+
Sbjct: 215 HVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLE 274
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
AC+ T P+ IT+++V A + + +L+H Y +RG ++ + V N LI Y +CG
Sbjct: 275 ACD-TVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDST-LPVLNTLITMYGRCGE 332
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
I + ++F+ +++++++SW S+IS + MHG+GK+A++ FE M + P+ +TF++VL
Sbjct: 333 ISTGQRVFD--YMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVL 390
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
ACSH GLVEE F+ M+ + + P ++HY C++D+LGRA RL++A ++ + +
Sbjct: 391 CACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQNMDFK-P 449
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315
VW +LLG+C H NVE+ ER + + E+E G+YVL+ +I A + D R+R+
Sbjct: 450 GPTVWGSLLGSCRIHCNVELAERASAMLFELEPKNAGNYVLLSHIYAKSRMWNDVRRVRK 509
Query: 316 VVDERNALKFPGRS 329
++ R K P S
Sbjct: 510 QLESRGLQKIPSCS 523
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 134/311 (43%), Gaps = 40/311 (12%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FDE E+ + WN + L E L+ +M +W GI NR
Sbjct: 130 KVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQM------NWIGIPS-----NRFTY 178
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
L AC +E L++ P +R + IH + + G+ H+HV L
Sbjct: 179 TYVL----KACVVSE------LSICP-------LRKGKEIHAHILRHGYEG-HVHVMTTL 220
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM--QKVVL 184
+D YA+ G + A +F ++ KN+VSW+++I+ +A + M +A+E F+ M +
Sbjct: 221 LDVYARFGYVSYASSVFG--AMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDT 278
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
PN +T +SVL AC+ +E G K V + + LI M GR G + +
Sbjct: 279 VPNPITMVSVLQACASLAALEHG-KLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQ 337
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM-ERGYGGDYVLMYNILAG 303
+V + +V+ W +L+ HG +G++ + M RG Y+ +L
Sbjct: 338 RVFDYMKKR--DVISWNSLISIYGMHG---LGKKAIQIFENMINRGVSPSYITFITVLCA 392
Query: 304 VWRYGDAERLR 314
G E +
Sbjct: 393 CSHAGLVEEAK 403
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 10/157 (6%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
+ L N +IT + GE+ + +F+ M R+V+SW +I Y A+ +F
Sbjct: 314 DSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFEN 373
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS----NCLIDT 129
M+ PS IT + V A G V +++ + N + IH C++D
Sbjct: 374 MIN-RGVSPSYITFITVLCACSHAGLVEEAKILF----ESMLNKYRIHPRMEHYACMVDI 428
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH 166
+ + A++L +++ + V W S++ +H
Sbjct: 429 LGRANRLDEAIELIQNMDFKPGPTV-WGSLLGSCRIH 464
>gi|125570503|gb|EAZ12018.1| hypothetical protein OsJ_01900 [Oryza sativa Japonica Group]
Length = 657
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 107/330 (32%), Positives = 182/330 (55%), Gaps = 4/330 (1%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
F+ F + ++ +WN ++ L++ + AR LF++MP R+ +SW+ +I GY +
Sbjct: 326 FIDHAQMQFKLSDKSHVASWNALMASLLRRNLVHEARQLFDDMPERDTISWSTLISGYVQ 385
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
SN AL +F M+ EP+EIT+ + A+ +G + + IH Y R
Sbjct: 386 SGNSNMALQIFCSMLDAG-VEPNEITLASALSAVANSGTLGQARWIHDYIISRSIQ-LTD 443
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+S LI+ YAKCG I A++LF + + ++ W SII A+HG ++E F ++Q
Sbjct: 444 KLSAGLINVYAKCGSIAEAVQLFNHVKDKSISVSPWNSIICNLAIHGYVNMSLELFSQLQ 503
Query: 181 KVV-LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+KPN +T+L VLNAC H G+V EG + F+ M ++ + P+IKHYGC++D+L RAG
Sbjct: 504 STTHIKPNSITYLGVLNACCHAGMVAEGKRQFESMRQQYGIQPEIKHYGCMVDLLCRAGY 563
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
LE+AE + +P + +VV W +L A GNV +GE+ ++ +++ +G + + N
Sbjct: 564 LEEAELLIKTMPMK-ADVVAWGCILAAARTQGNVALGEKAAEELSKLDPSHGASKIALSN 622
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRS 329
+ A + + +R+ + N + G S
Sbjct: 623 LYADAGHWSNVSVVRKELQNENLERLTGSS 652
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 135/301 (44%), Gaps = 35/301 (11%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+F+ +P+RN VTWN M+ VK G + A +F +P R+ VSW +IDGY +
Sbjct: 199 SIFELMPDRNTVTWNTMLNCYVKAGMINMAAEVFGVIPERDEVSWLTMIDGYMCADFLLQ 258
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL + MV +E+ ++ + A ++ V Q +H K GF+A H V L
Sbjct: 259 ALRTYVAMVGTVGIRANEVILVGLVKACSRHSAVSEGQQLHTVILKNGFDA-HAFVQATL 317
Query: 127 IDTYAKC-------------------------------GCIFSALKLFEDISVERKNLVS 155
I Y C + A +LF+D+ ++ +S
Sbjct: 318 IHYYGSCDFIDHAQMQFKLSDKSHVASWNALMASLLRRNLVHEARQLFDDM--PERDTIS 375
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215
W+++ISG+ G A++ F M ++PN +T S L+A ++ G + + D ++
Sbjct: 376 WSTLISGYVQSGNSNMALQIFCSMLDAGVEPNEITLASALSAVANSGTLGQARWIHDYII 435
Query: 216 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEM 275
L D K LI++ + G + +A ++ + + + +V W +++ + HG V M
Sbjct: 436 SRSIQLTD-KLSAGLINVYAKCGSIAEAVQLFNHVKDKSISVSPWNSIICNLAIHGYVNM 494
Query: 276 G 276
Sbjct: 495 S 495
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 109/211 (51%), Gaps = 11/211 (5%)
Query: 8 LFDELPE--RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 65
LFDE+P R+ N++++ L + G LE A+ L EMP R+ VS+T +I +R
Sbjct: 65 LFDEIPPLLRDATAQNILLSALARAGRLERAQCLLAEMPQRDAVSFTTVISALSRSGHPE 124
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIW-QNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
ALA+FR M+ E +P+E+T+ V A+ +G HG +RG + F I +N
Sbjct: 125 RALAVFRDMLT-EAVQPNEVTLAEVLTAMACDHGAPAPVGAAHGVAVRRGLDGFVIVATN 183
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
L+ Y + SA +FE + +N V+W ++++ + GM A E F V+
Sbjct: 184 -LVHAYGAVSQVPSARSIFELM--PDRNTVTWNTMLNCYVKAGMINMAAEVF----GVIP 236
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215
+ + V++L++++ + + L+ + MV
Sbjct: 237 ERDEVSWLTMIDGYMCADFLLQALRTYVAMV 267
>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 109/279 (39%), Positives = 178/279 (63%), Gaps = 5/279 (1%)
Query: 36 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW 95
A+ LF+ M R++VSW +I GY++ + A+ LFR+M++ + +P EI I+ V A
Sbjct: 364 AQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLS-DGIQPYEIAIMCVCGACS 422
Query: 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVS 155
Q +R + +H + K I VS+ +ID YAK GCI + ++F+ + K++ S
Sbjct: 423 QLSALRLGKELHCFALKAHLTE-DIFVSSSIIDMYAKGGCIGLSQRIFD--RLREKDVAS 479
Query: 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215
W II+G+ +HG GKEA+E FE+M ++ LKP+ TF +L ACSH GLVE+GL++F++M+
Sbjct: 480 WNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQML 539
Query: 216 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEM 275
+ P ++HY C++DMLGRAGR++ A ++ +P + + +W +LL +C HGN+ +
Sbjct: 540 NLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGD-PDSRIWSSLLSSCRIHGNLGL 598
Query: 276 GERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLR 314
GE+V K+LE+E +YVL+ N+ AG ++ D R+R
Sbjct: 599 GEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVR 637
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 2/177 (1%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
+IT G +R +F+++ +N+ W I+ YTR A+++F +++ +P
Sbjct: 147 IITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKP 206
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
T+ V A D+ Q+IHG K + + V N LI Y KCG + A+K
Sbjct: 207 DNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVS-DVFVGNALIAMYGKCGLVEEAVKR 265
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS 199
D+ ++ K + SW +++ G+A + ++A++ + +M L P+ T S+L ACS
Sbjct: 266 VFDL-MDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACS 321
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 83/185 (44%), Gaps = 17/185 (9%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
+I K G + ++ +F+ + ++V SW II GY R AL LF +M+ +P
Sbjct: 452 IIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGL-KP 510
Query: 83 SEITILAVFPAIWQNGDVRN-----CQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIF 137
+ T + A G V + Q+++ + + + C++D + G I
Sbjct: 511 DDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHY-----TCVVDMLGRAGRID 565
Query: 138 SALKLFEDISVERKNLVSWTSIISGFAMH---GMGKEAVENFERMQKVVLKPNRVTFLSV 194
AL+L E++ + + + W+S++S +H G+G++ ++ KP +S
Sbjct: 566 DALRLIEEMPGDPDSRI-WSSLLSSCRIHGNLGLGEKVANKLLELEPE--KPENYVLISN 622
Query: 195 LNACS 199
L A S
Sbjct: 623 LFAGS 627
>gi|225444117|ref|XP_002266487.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 553
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/328 (34%), Positives = 183/328 (55%), Gaps = 6/328 (1%)
Query: 5 GSKLFDELPE-RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
LF E+ R++V+ ++ G V G ++ AR +F++M +++VSW +I Y +
Sbjct: 227 AQSLFVEMAAMRDVVSHTILFNGYVDMGSIDLARGIFDQMSVKDLVSWNSMIHAYVKAKH 286
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
A+ LFR+M E EP E T+++V A D++N +L H + + + V
Sbjct: 287 PKKAIELFRKM-ENEMVEPDETTMVSVLAACASLADLQNGRLAHRFIIQNNPRQ-DLFVG 344
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
LID YAKCG + A+ F ++ +++ +WT+ I G A HG G +A+ F M+K
Sbjct: 345 TALIDMYAKCGSLEEAMVTF--YKMDSRDVFTWTTAIEGLANHGHGDKALSLFTEMEKQG 402
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
+KPN+ TF+SVL ACS GLV+EG F +MVE ++ P I+H GCL+D+L RAG L QA
Sbjct: 403 IKPNQATFVSVLMACSRSGLVKEGCLLFKRMVEAYQIQPKIEHLGCLLDILSRAGLLHQA 462
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
E+ +P + ++ +TLL AC H ++GE++ + E+ ++L+ N A
Sbjct: 463 EEFIKLMPPK-EKIIANKTLLSACMNHLEYDLGEKIANGLTELSSQSHATHILLSNFYAL 521
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
++ + + RRV+ E + K PG S V
Sbjct: 522 AGQWAEVAKTRRVMKEIDIRKVPGISSV 549
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 139/309 (44%), Gaps = 41/309 (13%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G++ AR LF+ MP R++ SW ++ Y + + L LF+RM+ E I+++ V
Sbjct: 123 GQVTDARRLFDGMPHRDLASWNTLLGAYN--DNAVEVLVLFKRMMY-EGIGGDHISMVIV 179
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
F A + G + +HGY K G + +SN L+ Y KCG + +A LF +++ R
Sbjct: 180 FSACGKIGGTEFGKEVHGYVIKVGIRP-ALSLSNALLGVYTKCGEMDAAQSLFVEMAAMR 238
Query: 151 ------------------------------KNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
K+LVSW S+I + K+A+E F +M+
Sbjct: 239 DVVSHTILFNGYVDMGSIDLARGIFDQMSVKDLVSWNSMIHAYVKAKHPKKAIELFRKME 298
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+++P+ T +SVL AC+ ++ G + + + + D+ LIDM + G L
Sbjct: 299 NEMVEPDETTMVSVLAACASLADLQNG-RLAHRFIIQNNPRQDLFVGTALIDMYAKCGSL 357
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER-GYGGDYVLMYN 299
E+A + S +V W T + + HG+ G++ EME+ G + +
Sbjct: 358 EEAMVTFYKMDSR--DVFTWTTAIEGLANHGH---GDKALSLFTEMEKQGIKPNQATFVS 412
Query: 300 ILAGVWRYG 308
+L R G
Sbjct: 413 VLMACSRSG 421
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 104/228 (45%), Gaps = 12/228 (5%)
Query: 50 SWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY 109
+W +I ++R A+ ++ + + P + T A+ A W+ G + + +H +
Sbjct: 40 TWNCLIRAFSRSPTPITAILIYNHFIKGRFVFPDKYTYPAMLKACWRMGSLSKGKEVHAH 99
Query: 110 GEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 169
K G ++ ++V N L+ Y G + A +LF+ + ++L SW +++ + + +
Sbjct: 100 VTKTGLDS-DVYVGNALLHLYGSTGQVTDARRLFD--GMPHRDLASWNTLLGAYNDNAV- 155
Query: 170 KEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC 229
E + F+RM + + ++ + V +AC G E G K V + + P +
Sbjct: 156 -EVLVLFKRMMYEGIGGDHISMVIVFSACGKIGGTEFG-KEVHGYVIKVGIRPALSLSNA 213
Query: 230 LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGE 277
L+ + + G ++ A+ + + VV T+L F+G V+MG
Sbjct: 214 LLGVYTKCGEMDAAQSLF--VEMAAMRDVVSHTIL----FNGYVDMGS 255
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
P++ T+ ++L AC G + +G K V + + D+ L+ + G G++ A +
Sbjct: 72 PDKYTYPAMLKACWRMGSLSKG-KEVHAHVTKTGLDSDVYVGNALLHLYGSTGQVTDARR 130
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
+ G+P ++ W TLLGA + + VE+ R + E G GGD++ M + +
Sbjct: 131 LFDGMPHR--DLASWNTLLGAYNDNA-VEVLVLFKRMMYE---GIGGDHISMVIVFSACG 184
Query: 306 RYGDAE 311
+ G E
Sbjct: 185 KIGGTE 190
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.140 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,350,266,084
Number of Sequences: 23463169
Number of extensions: 218592537
Number of successful extensions: 568161
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7686
Number of HSP's successfully gapped in prelim test: 2998
Number of HSP's that attempted gapping in prelim test: 438673
Number of HSP's gapped (non-prelim): 53170
length of query: 331
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 188
effective length of database: 9,003,962,200
effective search space: 1692744893600
effective search space used: 1692744893600
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 77 (34.3 bits)