BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048799
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PJF|A Chain A, Structure Of Enr G93v Mutant-Nad+-Triclosan Complex
pdb|3PJF|B Chain B, Structure Of Enr G93v Mutant-Nad+-Triclosan Complex
Length = 270
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 74/199 (37%), Gaps = 32/199 (16%)
Query: 77 CEYTEPSEI-TILAVFPAIWQNGDVRNCQLIHGYGE-----------KRGFNAFHIHVSN 124
C+ E + I T+ A +W D ++ G+ + GF H S
Sbjct: 63 CDVAEDASIDTMFAELGKVWPKFDGFVHSIVFAPGDQLDGDYVNAVTREGFKIAHDISSY 122
Query: 125 CLIDTYAKCGCIF---SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ C + SAL + ER I + + G+ K ++E R
Sbjct: 123 SFVAMAKACRSMLNPGSALLTLSYLGAERA--------IPNYNVMGLAKASLEANVRYMA 174
Query: 182 VVLKPNRVTFLSVLNACSHG---GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
+ P V +NA S G L G+K F KM+ CE + I+ + D+ A
Sbjct: 175 NAMGPEGVR----VNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVGNSAA 230
Query: 239 RLEQAEKVASGIPSEITNV 257
L +++GI E+ +V
Sbjct: 231 FL--CSDLSAGISGEVVHV 247
>pdb|3PJD|A Chain A, Structure Of Enr G93a Mutant-Nad+-Triclosan Complex
pdb|3PJD|B Chain B, Structure Of Enr G93a Mutant-Nad+-Triclosan Complex
Length = 270
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 66/176 (37%), Gaps = 26/176 (14%)
Query: 88 LAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIF---SALKLFE 144
+A P +GD N + GF H S + C + SAL
Sbjct: 92 IAFAPGDQLDGDYVNAV------TREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLS 145
Query: 145 DISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHG--- 201
+ ER I + + G+ K ++E R + P V +NA S G
Sbjct: 146 YLGAERA--------IPNYNVMGLAKASLEANVRYMANAMGPEGVR----VNAISAGPIR 193
Query: 202 GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNV 257
L G+K F KM+ CE + I+ + D+ A L +++GI E+ +V
Sbjct: 194 TLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVGNSAAFL--CSDLSAGISGEVVHV 247
>pdb|3PJE|A Chain A, Structure Of Enr G93s Mutant-Nad+-Triclosan Complex
pdb|3PJE|B Chain B, Structure Of Enr G93s Mutant-Nad+-Triclosan Complex
Length = 270
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 20/152 (13%)
Query: 112 KRGFNAFHIHVSNCLIDTYAKCGCIF---SALKLFEDISVERKNLVSWTSIISGFAMHGM 168
+ GF H S + C + SAL + ER I + + G+
Sbjct: 110 REGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERA--------IPNYNVMGL 161
Query: 169 GKEAVENFERMQKVVLKPNRVTFLSVLNACSHG---GLVEEGLKFFDKMVEECEVLPDIK 225
K ++E R + P V +NA S G L G+K F KM+ CE + I+
Sbjct: 162 AKASLEANVRYMANAMGPEGVR----VNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIR 217
Query: 226 HYGCLIDMLGRAGRLEQAEKVASGIPSEITNV 257
+ D+ A L +++GI E+ +V
Sbjct: 218 RTVTIEDVGNSAAFL--CSDLSAGISGEVVHV 247
>pdb|1C14|A Chain A, Crystal Structure Of E Coli Enoyl Reductase-nad+-triclosan
Complex
pdb|1C14|B Chain B, Crystal Structure Of E Coli Enoyl Reductase-nad+-triclosan
Complex
pdb|1I2Z|A Chain A, E. Coli Enoyl Reductase In Complex With Nad And Brl-12654
pdb|1I2Z|B Chain B, E. Coli Enoyl Reductase In Complex With Nad And Brl-12654
pdb|1I30|A Chain A, E. Coli Enoyl Reductase +nad+sb385826
pdb|1I30|B Chain B, E. Coli Enoyl Reductase +nad+sb385826
pdb|1LX6|A Chain A, Crystal Structure Of E. Coli Enoyl Reductase-Nad+ With A
Bound Benzamide Inhibitor
pdb|1LX6|B Chain B, Crystal Structure Of E. Coli Enoyl Reductase-Nad+ With A
Bound Benzamide Inhibitor
pdb|1LXC|A Chain A, Crystal Structure Of E. Coli Enoyl Reductase-Nad+ With A
Bound Acrylamide Inhibitor
pdb|1LXC|B Chain B, Crystal Structure Of E. Coli Enoyl Reductase-Nad+ With A
Bound Acrylamide Inhibitor
pdb|1MFP|A Chain A, E. Coli Enoyl Reductase In Complex With Nad And Sb611113
pdb|1MFP|B Chain B, E. Coli Enoyl Reductase In Complex With Nad And Sb611113
pdb|2FHS|A Chain A, Structure Of Acyl Carrier Protein Bound To Fabi, The Enoyl
Reductase From Escherichia Coli
pdb|2FHS|B Chain B, Structure Of Acyl Carrier Protein Bound To Fabi, The Enoyl
Reductase From Escherichia Coli
Length = 262
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 73/203 (35%), Gaps = 40/203 (19%)
Query: 77 CEYTEPSEI-TILAVFPAIWQNGDVRNCQLIHGYG---------------EKRGFNAFHI 120
C+ E + I T+ A +W D +H G + GF H
Sbjct: 63 CDVAEDASIDTMFAELGKVWPKFD----GFVHSIGFAPGDQLDGDYVNAVTREGFKIAHD 118
Query: 121 HVSNCLIDTYAKCGCIF---SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
S + C + SAL + ER I + + G+ K ++E
Sbjct: 119 ISSYSFVAMAKACRSMLNPGSALLTLSYLGAERA--------IPNYNVMGLAKASLEANV 170
Query: 178 RMQKVVLKPNRVTFLSVLNACSHG---GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDML 234
R + P V +NA S G L G+K F KM+ CE + I+ + D+
Sbjct: 171 RYMANAMGPEGVR----VNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVG 226
Query: 235 GRAGRLEQAEKVASGIPSEITNV 257
A L +++GI E+ +V
Sbjct: 227 NSAAFL--CSDLSAGISGEVVHV 247
>pdb|1DFG|A Chain A, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad And Benzo-Diazaborine
pdb|1DFG|B Chain B, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad And Benzo-Diazaborine
pdb|1DFH|A Chain A, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad And Thieno-Diazaborine
pdb|1DFH|B Chain B, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad And Thieno-Diazaborine
pdb|1DFI|A Chain A, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad
pdb|1DFI|B Chain B, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad
pdb|1DFI|C Chain C, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad
pdb|1DFI|D Chain D, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad
pdb|1QG6|A Chain A, Crystal Structure Of E. Coli Enoyl Acyl Carrier Protein
Reductase In Complex With Nad And Triclosan
pdb|1QG6|B Chain B, Crystal Structure Of E. Coli Enoyl Acyl Carrier Protein
Reductase In Complex With Nad And Triclosan
pdb|1QG6|C Chain C, Crystal Structure Of E. Coli Enoyl Acyl Carrier Protein
Reductase In Complex With Nad And Triclosan
pdb|1QG6|D Chain D, Crystal Structure Of E. Coli Enoyl Acyl Carrier Protein
Reductase In Complex With Nad And Triclosan
pdb|1D8A|A Chain A, E. Coli Enoyl ReductaseNAD+TRICLOSAN COMPLEX
pdb|1D8A|B Chain B, E. Coli Enoyl ReductaseNAD+TRICLOSAN COMPLEX
Length = 261
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 73/203 (35%), Gaps = 40/203 (19%)
Query: 77 CEYTEPSEI-TILAVFPAIWQNGDVRNCQLIHGYG---------------EKRGFNAFHI 120
C+ E + I T+ A +W D +H G + GF H
Sbjct: 62 CDVAEDASIDTMFAELGKVWPKFD----GFVHSIGFAPGDQLDGDYVNAVTREGFKIAHD 117
Query: 121 HVSNCLIDTYAKCGCIF---SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
S + C + SAL + ER I + + G+ K ++E
Sbjct: 118 ISSYSFVAMAKACRSMLNPGSALLTLSYLGAERA--------IPNYNVMGLAKASLEANV 169
Query: 178 RMQKVVLKPNRVTFLSVLNACSHG---GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDML 234
R + P V +NA S G L G+K F KM+ CE + I+ + D+
Sbjct: 170 RYMANAMGPEGVR----VNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVG 225
Query: 235 GRAGRLEQAEKVASGIPSEITNV 257
A L +++GI E+ +V
Sbjct: 226 NSAAFL--CSDLSAGISGEVVHV 246
>pdb|1QSG|A Chain A, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|B Chain B, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|C Chain C, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|D Chain D, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|E Chain E, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|F Chain F, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|G Chain G, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|H Chain H, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
Length = 265
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 73/203 (35%), Gaps = 40/203 (19%)
Query: 77 CEYTEPSEI-TILAVFPAIWQNGDVRNCQLIHGYG---------------EKRGFNAFHI 120
C+ E + I T+ A +W D +H G + GF H
Sbjct: 66 CDVAEDASIDTMFAELGKVWPKFD----GFVHSIGFAPGDQLDGDYVNAVTREGFKIAHD 121
Query: 121 HVSNCLIDTYAKCGCIF---SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177
S + C + SAL + ER I + + G+ K ++E
Sbjct: 122 ISSYSFVAMAKACRSMLNPGSALLTLSYLGAERA--------IPNYNVMGLAKASLEANV 173
Query: 178 RMQKVVLKPNRVTFLSVLNACSHG---GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDML 234
R + P V +NA S G L G+K F KM+ CE + I+ + D+
Sbjct: 174 RYMANAMGPEGVR----VNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVG 229
Query: 235 GRAGRLEQAEKVASGIPSEITNV 257
A L +++GI E+ +V
Sbjct: 230 NSAAFL--CSDLSAGISGEVVHV 250
>pdb|3UGM|A Chain A, Structure Of Tal Effector Pthxo1 Bound To Its Dna Target
Length = 1047
Score = 28.9 bits (63), Expect = 4.3, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 160 ISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202
+ A HG GK+A+E +R+ V+ + + +T V+ SH G
Sbjct: 294 VVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDG 336
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,384,175
Number of Sequences: 62578
Number of extensions: 427792
Number of successful extensions: 1012
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 996
Number of HSP's gapped (non-prelim): 21
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)