BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048799
(331 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q680Z7|PPR24_ARATH Pentatricopeptide repeat-containing protein At1g09220,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E25 PE=2
SV=1
Length = 504
Score = 403 bits (1036), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/329 (59%), Positives = 240/329 (72%), Gaps = 2/329 (0%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
D K+FDE+PERN VTWNVMITGL G+ E A E+MP R VVSWT IIDGY R+++
Sbjct: 176 DAHKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMPNRTVVSWTTIIDGYARVDK 235
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
A+ LF RMVAC+ +P+EITILA+ PA+W GD++ C +H Y KRGF I V+
Sbjct: 236 PKEAILLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCGSVHAYVGKRGFVPCDIRVT 295
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N LID YAKCGCI SA K F +I RKNLVSWT++IS FA+HGMGKEAV F+ M+++
Sbjct: 296 NSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVSMFKDMERLG 355
Query: 184 LKPNRVTFLSVLNACSHGGLVEEG-LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
LKPNRVT +SVLNACSHGGL EE L+FF+ MV E ++ PD+KHYGCL+DML R GRLE+
Sbjct: 356 LKPNRVTMISVLNACSHGGLAEEEFLEFFNTMVNEYKITPDVKHYGCLVDMLRRKGRLEE 415
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302
AEK+A IP E VVWR LLGACS + + E+ ERVTRK++E+ER +GGDYVLM NI
Sbjct: 416 AEKIALEIPIE-EKAVVWRMLLGACSVYDDAELAERVTRKLMELERSHGGDYVLMSNIFC 474
Query: 303 GVWRYGDAERLRRVVDERNALKFPGRSLV 331
G R+ DA+R R+ +D R K PG S V
Sbjct: 475 GTGRFLDAQRFRKQMDVRGVAKLPGHSQV 503
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 101/231 (43%), Gaps = 35/231 (15%)
Query: 112 KRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI------------------------- 146
K GF + H++V L+ Y G + A K+F+++
Sbjct: 151 KLGFES-HVYVQTALVGMYLVGGNMIDAHKVFDEMPERNPVTWNVMITGLTNLGDFEKAL 209
Query: 147 ----SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV-VLKPNRVTFLSVLNACSHG 201
+ + +VSWT+II G+A KEA+ F RM +KPN +T L++L A +
Sbjct: 210 CFLEKMPNRTVVSWTTIIDGYARVDKPKEAILLFSRMVACDAIKPNEITILAILPAVWNL 269
Query: 202 GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWR 261
G ++ + + V DI+ LID + G ++ A K IP+ N+V W
Sbjct: 270 GDLKMCGSVHAYVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWT 329
Query: 262 TLLGACSFHGNVEMGERVTRKILEMER-GYGGDYVLMYNILAGVWRYGDAE 311
T++ A + HG MG+ +MER G + V M ++L G AE
Sbjct: 330 TMISAFAIHG---MGKEAVSMFKDMERLGLKPNRVTMISVLNACSHGGLAE 377
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 258 bits (660), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 130/330 (39%), Positives = 210/330 (63%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L D K+FDE+ ER++++WN +++G + G+++ A+ LF M + +VSWT +I GYT +
Sbjct: 160 LVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGI 219
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
A+ FR M EP EI++++V P+ Q G + + IH Y E+RGF
Sbjct: 220 GCYVEAMDFFREMQLAG-IEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLK-QTG 277
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LI+ Y+KCG I A++LF + E K+++SW+++ISG+A HG A+E F MQ+
Sbjct: 278 VCNALIEMYSKCGVISQAIQLFGQM--EGKDVISWSTMISGYAYHGNAHGAIETFNEMQR 335
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPN +TFL +L+ACSH G+ +EGL++FD M ++ ++ P I+HYGCLID+L RAG+LE
Sbjct: 336 AKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLE 395
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A ++ +P + + +W +LL +C GN+++ ++E+E G+YVL+ NI
Sbjct: 396 RAVEITKTMPMK-PDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIY 454
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + ++ D RLR+++ N K PG SL+
Sbjct: 455 ADLGKWEDVSRLRKMIRNENMKKTPGGSLI 484
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 129/286 (45%), Gaps = 39/286 (13%)
Query: 23 MITGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACE 78
M+T +V K +++YA LF ++ NV + II YT + + ++++++
Sbjct: 44 MVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKS 103
Query: 79 YTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFS 138
+ P T +F + G + +HG+ K G FH+ N LID Y K +
Sbjct: 104 FELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFG-PRFHVVTENALIDMYMKFDDLVD 162
Query: 139 ALKLFEDISVER------------------------------KNLVSWTSIISGFAMHGM 168
A K+F+++ ER K +VSWT++ISG+ G
Sbjct: 163 AHKVFDEM-YERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGC 221
Query: 169 GKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG 228
EA++ F MQ ++P+ ++ +SVL +C+ G +E G K+ E L
Sbjct: 222 YVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELG-KWIHLYAERRGFLKQTGVCN 280
Query: 229 CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
LI+M + G + QA ++ + E +V+ W T++ ++HGN
Sbjct: 281 ALIEMYSKCGVISQAIQLFGQM--EGKDVISWSTMISGYAYHGNAH 324
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 252 bits (644), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 131/332 (39%), Positives = 209/332 (62%), Gaps = 7/332 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYT 59
L D K+FDE+ +++ WN ++ G K GE++ ARSL E MPC RN VSWT +I GY
Sbjct: 167 LGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYA 226
Query: 60 RMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119
+ R++ A+ +F+RM+ E EP E+T+LAV A G + + I Y + RG N
Sbjct: 227 KSGRASEAIEVFQRMLM-ENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRA- 284
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+ ++N +ID YAK G I AL +FE V +N+V+WT+II+G A HG G EA+ F RM
Sbjct: 285 VSLNNAVIDMYAKSGNITKALDVFE--CVNERNVVTWTTIIAGLATHGHGAEALAMFNRM 342
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
K ++PN VTF+++L+ACSH G V+ G + F+ M + + P+I+HYGC+ID+LGRAG+
Sbjct: 343 VKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGK 402
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
L +A++V +P + N +W +LL A + H ++E+GER +++++E G+Y+L+ N
Sbjct: 403 LREADEVIKSMPFK-ANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNSGNYMLLAN 461
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ + + R+ ++ +R ++ K G S +
Sbjct: 462 LYSNLGRWDESRMMRNMMKGIGVKKMAGESSI 493
Score = 95.1 bits (235), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 124/276 (44%), Gaps = 39/276 (14%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG---ALALFRRMVACEYTEPSEITI 87
G L YA S+F PC N +I + ++ N A+ ++R++ A +P T
Sbjct: 61 GHLRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAHSIAITVYRKLWAL-CAKPDTFTF 119
Query: 88 LAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS 147
V + DV + IHG GF++ +HV LI Y CG + A K+F+++
Sbjct: 120 PFVLKIAVRVSDVWFGRQIHGQVVVFGFDS-SVHVVTGLIQMYFSCGGLGDARKMFDEML 178
Query: 148 VER-------------------------------KNLVSWTSIISGFAMHGMGKEAVENF 176
V+ +N VSWT +ISG+A G EA+E F
Sbjct: 179 VKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVF 238
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
+RM ++P+ VT L+VL+AC+ G +E G + V+ + + +IDM +
Sbjct: 239 QRMLMENVEPDEVTLLAVLSACADLGSLELGERIC-SYVDHRGMNRAVSLNNAVIDMYAK 297
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
+G + +A V + NVV W T++ + HG+
Sbjct: 298 SGNITKALDVFECVNER--NVVTWTTIIAGLATHGH 331
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 246 bits (629), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 126/325 (38%), Positives = 203/325 (62%), Gaps = 4/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FD++ RN +WNVM+ G +K GELE A+ +F EMP R+ VSW+ +I G N
Sbjct: 193 EIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNE 252
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
+ FR + + P+E+++ V A Q+G +++HG+ EK G+ ++ + V+N L
Sbjct: 253 SFLYFRELQRAGMS-PNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGY-SWIVSVNNAL 310
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y++CG + A +FE + E++ +VSWTS+I+G AMHG G+EAV F M + P
Sbjct: 311 IDMYSRCGNVPMARLVFEGMQ-EKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTP 369
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ ++F+S+L+ACSH GL+EEG +F +M + P+I+HYGC++D+ GR+G+L++A
Sbjct: 370 DGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDF 429
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P T +VWRTLLGACS HGN+E+ E+V +++ E++ GD VL+ N A +
Sbjct: 430 ICQMPIPPT-AIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGK 488
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ D +R+ + + K SLV
Sbjct: 489 WKDVASIRKSMIVQRIKKTTAWSLV 513
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 107/250 (42%), Gaps = 20/250 (8%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
L YAR L P + + ++ GY+ + + ++A+F M+ + P + V
Sbjct: 55 LPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIK 114
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
A+ +R +H K G + H+ V LI Y CGC+ A K+F+++ + N
Sbjct: 115 AVENFRSLRTGFQMHCQALKHGLES-HLFVGTTLIGMYGGCGCVEFARKVFDEM--HQPN 171
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
LV+W ++I+ A E F++M L N ++ +L G +E + F
Sbjct: 172 LVAWNAVITACFRGNDVAGAREIFDKM----LVRNHTSWNVMLAGYIKAGELESAKRIFS 227
Query: 213 KMVEECEV-----LPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC 267
+M +V + I H G + L++A P+E++ V L AC
Sbjct: 228 EMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMS----PNEVSLTGV----LSAC 279
Query: 268 SFHGNVEMGE 277
S G+ E G+
Sbjct: 280 SQSGSFEFGK 289
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 245 bits (625), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 133/335 (39%), Positives = 203/335 (60%), Gaps = 11/335 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + +LFDE+P ++ V WNVMITG +K E++ AR LF+ ++VV+W +I GY
Sbjct: 194 IDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNC 253
Query: 62 NRSNGALALFRRMV-ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
AL +F+ M A E+ P +TIL++ A GD+ + +H Y + + I
Sbjct: 254 GYPKEALGIFKEMRDAGEH--PDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSI 311
Query: 121 HVS----NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
+V N LID YAKCG I A+++F V+ ++L +W ++I G A+H + ++E F
Sbjct: 312 YVGTPIWNALIDMYAKCGSIDRAIEVFR--GVKDRDLSTWNTLIVGLALH-HAEGSIEMF 368
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
E MQ++ + PN VTF+ V+ ACSH G V+EG K+F M + + P+IKHYGC++DMLGR
Sbjct: 369 EEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGR 428
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
AG+LE+A + E N +VWRTLLGAC +GNVE+G+ K+L M + GDYVL
Sbjct: 429 AGQLEEAFMFVESMKIE-PNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVL 487
Query: 297 MYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ NI A ++ +++R++ D+ K G SL+
Sbjct: 488 LSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLI 522
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 122/268 (45%), Gaps = 52/268 (19%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I G+L A LF++ + V+W+ + GY + + + A+ LF M
Sbjct: 151 NALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEM------ 204
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P + + A+++ ++ CL KC + SA
Sbjct: 205 -PYKDQV-----------------------------AWNVMITGCL-----KCKEMDSAR 229
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
+LF+ + K++V+W ++ISG+ G KEA+ F+ M+ P+ VT LS+L+AC+
Sbjct: 230 ELFDRFT--EKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAV 287
Query: 201 GGLVEEGLKFFDKMVEECEVLPDI----KHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256
G +E G + ++E V I + LIDM + G +++A +V G+ +
Sbjct: 288 LGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDR--D 345
Query: 257 VVVWRTLLGACSFH---GNVEMGERVTR 281
+ W TL+ + H G++EM E + R
Sbjct: 346 LSTWNTLIVGLALHHAEGSIEMFEEMQR 373
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 119/267 (44%), Gaps = 15/267 (5%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G L+YA LF+E+P +V ++ G + + ++L+ M P T V
Sbjct: 60 GALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEK-RGVSPDRYTFTFV 118
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A + N HG + GF + +V N LI +A CG + A +LF+D +
Sbjct: 119 LKACSKLEWRSNGFAFHGKVVRHGF-VLNEYVKNALILFHANCGDLGIASELFDDSAKAH 177
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
K V+W+S+ SG+A G EA+ F+ M ++V + ++ C ++ +
Sbjct: 178 K--VAWSSMTSGYAKRGKIDEAMRLFDEMP----YKDQVAWNVMITGCLKCKEMDSAREL 231
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI--PSEITNVVVWRTLLGACS 268
FD+ E+ D+ + +I G ++A + + E +VV +LL AC+
Sbjct: 232 FDRFTEK-----DVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACA 286
Query: 269 FHGNVEMGERVTRKILEMERGYGGDYV 295
G++E G+R+ ILE YV
Sbjct: 287 VLGDLETGKRLHIYILETASVSSSIYV 313
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 9/191 (4%)
Query: 92 PAIWQN-GDVRNCQLIHGYGEKRGFNAFHIHVSNCLI--DTYAKCGCIFSALKLFEDISV 148
P +WQN ++R + IH G + ++ V LI + + G + A KLF++I
Sbjct: 16 PKLWQNCKNIRTLKQIHASMVVNGLMS-NLSVVGELIYSASLSVPGALKYAHKLFDEIP- 73
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208
+ ++ ++ G A ++ V + M+K + P+R TF VL ACS G
Sbjct: 74 -KPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGF 132
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
F K+V VL + LI G L A ++ S + V W ++ +
Sbjct: 133 AFHGKVVRHGFVLNEYVK-NALILFHANCGDLGIASELFDD--SAKAHKVAWSSMTSGYA 189
Query: 269 FHGNVEMGERV 279
G ++ R+
Sbjct: 190 KRGKIDEAMRL 200
>sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g33350
OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
Length = 538
Score = 244 bits (622), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 123/328 (37%), Positives = 202/328 (61%), Gaps = 7/328 (2%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFDE+ ERN+V+W M++G + G++ A +LFE+MP R+V SW I+ T+
Sbjct: 183 QLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLE 242
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
A++LFRRM+ P+E+T++ V A Q G ++ + IH + +R ++ + VSN L
Sbjct: 243 AVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSS-DVFVSNSL 301
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV--- 183
+D Y KCG + A +F+ S +K+L +W S+I+ FA+HG +EA+ FE M K+
Sbjct: 302 VDLYGKCGNLEEASSVFKMAS--KKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNIND 359
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
+KP+ +TF+ +LNAC+HGGLV +G +FD M + P I+HYGCLID+LGRAGR ++A
Sbjct: 360 IKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDEA 419
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
+V S + + + +W +LL AC HG++++ E + ++ + GG +M N+
Sbjct: 420 LEVMSTMKMK-ADEAIWGSLLNACKIHGHLDLAEVAVKNLVALNPNNGGYVAMMANLYGE 478
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
+ + +A R R+++ +NA K PG S +
Sbjct: 479 MGNWEEARRARKMIKHQNAYKPPGWSRI 506
Score = 35.4 bits (80), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 74/197 (37%), Gaps = 38/197 (19%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L++ S +F +++L WN MI G E A ++FEEM N+
Sbjct: 311 LEEASSVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNI------------- 357
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+P IT + + A G V + R I
Sbjct: 358 ----------------NDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIE 401
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKEAVENFER 178
CLID + G AL++ + ++ + W S+++ +HG + + AV+N
Sbjct: 402 HYGCLIDLLGRAGRFDEALEVMSTMKMKADEAI-WGSLLNACKIHGHLDLAEVAVKNL-- 458
Query: 179 MQKVVLKPNRVTFLSVL 195
V L PN +++++
Sbjct: 459 ---VALNPNNGGYVAMM 472
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 239 bits (610), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 121/328 (36%), Positives = 198/328 (60%), Gaps = 5/328 (1%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
K+FD +PER+LV+ MIT K G +E AR+LF+ M R++VSW +IDGY +
Sbjct: 180 AQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFP 239
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
N AL LF++++A +P EIT++A A Q G + + IH + + ++ V
Sbjct: 240 NDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIR-LNVKVCT 298
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV- 183
LID Y+KCG + A+ +F D RK++V+W ++I+G+AMHG ++A+ F MQ +
Sbjct: 299 GLIDMYSKCGSLEEAVLVFND--TPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITG 356
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
L+P +TF+ L AC+H GLV EG++ F+ M +E + P I+HYGCL+ +LGRAG+L++A
Sbjct: 357 LQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRA 416
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
+ + + + V+W ++LG+C HG+ +G+ + ++ + G YVL+ NI A
Sbjct: 417 YETIKNMNMD-ADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYAS 475
Query: 304 VWRYGDAERLRRVVDERNALKFPGRSLV 331
V Y ++R ++ E+ +K PG S +
Sbjct: 476 VGDYEGVAKVRNLMKEKGIVKEPGISTI 503
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 131/271 (48%), Gaps = 39/271 (14%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G++ ++ +LF + ++ +T I+ + + A L+ ++++ E P+E T
Sbjct: 78 GKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSE-INPNEFT---- 132
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI---- 146
F ++ ++ ++ +LIH + K G +V+ L+D YAK G + SA K+F+ +
Sbjct: 133 FSSLLKSCSTKSGKLIHTHVLKFGL-GIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERS 191
Query: 147 -------------------------SVERKNLVSWTSIISGFAMHGMGKEAVENFER-MQ 180
S+ +++VSW +I G+A HG +A+ F++ +
Sbjct: 192 LVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLA 251
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ KP+ +T ++ L+ACS G +E G ++ V+ + ++K LIDM + G L
Sbjct: 252 EGKPKPDEITVVAALSACSQIGALETG-RWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSL 310
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
E+A V + P + ++V W ++ + HG
Sbjct: 311 EEAVLVFNDTPRK--DIVAWNAMIAGYAMHG 339
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 75/177 (42%), Gaps = 37/177 (20%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L++ +F++ P +++V WN MI G YA + GY
Sbjct: 310 LEEAVLVFNDTPRKDIVAWNAMIAG--------YA------------------MHGY--- 340
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRN-CQLIHGYGEKRGFNAFHI 120
S AL LF M +P++IT + A G V ++ G++ G I
Sbjct: 341 --SQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKP-KI 397
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKEAVE 174
CL+ + G + A + ++++++ +++ W+S++ +HG +GKE E
Sbjct: 398 EHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVL-WSSVLGSCKLHGDFVLGKEIAE 453
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 13/147 (8%)
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
YA G I +L LF +L +T+ I+ +++G+ +A + ++ + PN
Sbjct: 74 YASHGKIRHSLALFHQ--TIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEF 131
Query: 190 TFLSVLNACS--HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
TF S+L +CS G L+ + F ++ P + L+D+ + G + A+KV
Sbjct: 132 TFSSLLKSCSTKSGKLIHTHVLKFGLGID-----PYVA--TGLVDVYAKGGDVVSAQKVF 184
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVE 274
+P ++V ++ + GNVE
Sbjct: 185 DRMPER--SLVSSTAMITCYAKQGNVE 209
>sp|Q9FLS9|PP441_ARATH Pentatricopeptide repeat-containing protein At5g61800
OS=Arabidopsis thaliana GN=PCMP-E8 PE=2 SV=1
Length = 499
Score = 239 bits (609), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 125/323 (38%), Positives = 197/323 (60%), Gaps = 11/323 (3%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFDE P+R++VT+NV+I GLVK E+ AR LF+ MP R++VSW +I GY +MN
Sbjct: 173 QLFDENPQRDVVTYNVLIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCRE 232
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF--NAFHIHVSN 124
A+ LF MVA +P + I++ A Q+GD + + IH Y +++ ++F ++
Sbjct: 233 AIKLFDEMVALGL-KPDNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLFIDSF---LAT 288
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
L+D YAKCG I +A+++FE S K L +W ++I+G AMHG G+ V+ F +M +
Sbjct: 289 GLVDFYAKCGFIDTAMEIFELCS--DKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGI 346
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
KP+ VTF+SVL CSH GLV+E FD+M +V ++KHYGC+ D+LGRAG +E+A
Sbjct: 347 KPDGVTFISVLVGCSHSGLVDEARNLFDQMRSLYDVNREMKHYGCMADLLGRAGLIEEAA 406
Query: 245 KVASGIPSEITN---VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
++ +P + N ++ W LLG C HGN+E+ E+ ++ + GG Y +M +
Sbjct: 407 EMIEQMPKDGGNREKLLAWSGLLGGCRIHGNIEIAEKAANRVKALSPEDGGVYKVMVEMY 466
Query: 302 AGVWRYGDAERLRRVVDERNALK 324
A R+ + ++R ++D +K
Sbjct: 467 ANAERWEEVVKVREIIDRDKKVK 489
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 114/260 (43%), Gaps = 35/260 (13%)
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFED------- 145
A +NGD+ + +H + G + + N LI Y+ I SAL+LF++
Sbjct: 126 AAKKNGDLTLVKTLHCQALRFGLLS-DLFTLNTLIRVYSLIAPIDSALQLFDENPQRDVV 184
Query: 146 ----------------------ISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
S+ ++LVSW S+ISG+A +EA++ F+ M +
Sbjct: 185 TYNVLIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIKLFDEMVALG 244
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243
LKP+ V +S L+AC+ G ++G D + + G L+D + G ++ A
Sbjct: 245 LKPDNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLFIDSFLATG-LVDFYAKCGFIDTA 303
Query: 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303
++ + S+ T + W ++ + HGN E+ RK++ G D V ++L G
Sbjct: 304 MEIFE-LCSDKT-LFTWNAMITGLAMHGNGELTVDYFRKMV--SSGIKPDGVTFISVLVG 359
Query: 304 VWRYGDAERLRRVVDERNAL 323
G + R + D+ +L
Sbjct: 360 CSHSGLVDEARNLFDQMRSL 379
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 79/203 (38%), Gaps = 59/203 (29%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
F+ ++F+ ++ L TWN MITGL G
Sbjct: 299 FIDTAMEIFELCSDKTLFTWNAMITGLAMHG----------------------------- 329
Query: 61 MNRSNGALAL--FRRMVACEYTEPSEITILAVFPAIWQNG---DVRNC--QLIHGYGEKR 113
NG L + FR+MV+ +P +T ++V +G + RN Q+ Y R
Sbjct: 330 ----NGELTVDYFRKMVSSG-IKPDGVTFISVLVGCSHSGLVDEARNLFDQMRSLYDVNR 384
Query: 114 GFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE---RKNLVSWTSIISGFAMHGMGK 170
+ C+ D + G I A ++ E + + R+ L++W+ ++ G +HG
Sbjct: 385 EMKHY-----GCMADLLGRAGLIEEAAEMIEQMPKDGGNREKLLAWSGLLGGCRIHG--- 436
Query: 171 EAVENFERMQKVVLKPNRVTFLS 193
N E +K NRV LS
Sbjct: 437 ----NIEIAEKAA---NRVKALS 452
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 239 bits (609), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 126/324 (38%), Positives = 196/324 (60%), Gaps = 5/324 (1%)
Query: 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67
LFD +PE + V+WN +I G VK G+++ A +LF +M +N +SWT +I GY + + + A
Sbjct: 172 LFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEA 231
Query: 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127
L LF M + EP +++ A Q G + + IH Y K + + LI
Sbjct: 232 LQLFHEMQNSD-VEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSV-LGCVLI 289
Query: 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187
D YAKCG + AL++F++I ++K++ +WT++ISG+A HG G+EA+ F MQK+ +KPN
Sbjct: 290 DMYAKCGEMEEALEVFKNI--KKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPN 347
Query: 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247
+TF +VL ACS+ GLVEEG F M + + P I+HYGC++D+LGRAG L++A++
Sbjct: 348 VITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFI 407
Query: 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+P + N V+W LL AC H N+E+GE + ++ ++ +GG YV NI A ++
Sbjct: 408 QEMPLK-PNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKW 466
Query: 308 GDAERLRRVVDERNALKFPGRSLV 331
A RR++ E+ K PG S +
Sbjct: 467 DKAAETRRLMKEQGVAKVPGCSTI 490
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 137/301 (45%), Gaps = 36/301 (11%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYT- 59
FL +FD + WN+MI G E E + L++ M C + + YT
Sbjct: 64 FLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPH-----NAYTF 118
Query: 60 -RMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF 118
+ ++ L+ F ++IT L ++N LI+ Y F
Sbjct: 119 PSLLKACSNLSAFEETTQIH----AQITKLG-----YENDVYAVNSLINSYAVTGNFKLA 169
Query: 119 HI---------HVS-NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 168
H+ VS N +I Y K G + AL LF ++ KN +SWT++ISG+ M
Sbjct: 170 HLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMA--EKNAISWTTMISGYVQADM 227
Query: 169 GKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG 228
KEA++ F MQ ++P+ V+ + L+AC+ G +E+G K+ + + + D G
Sbjct: 228 NKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQG-KWIHSYLNKTRIRMD-SVLG 285
Query: 229 C-LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME 287
C LIDM + G +E+A +V I + +V W L+ ++HG+ G K +EM+
Sbjct: 286 CVLIDMYAKCGEMEEALEVFKNIKKK--SVQAWTALISGYAYHGH---GREAISKFMEMQ 340
Query: 288 R 288
+
Sbjct: 341 K 341
>sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510
OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1
Length = 511
Score = 238 bits (606), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 124/323 (38%), Positives = 198/323 (61%), Gaps = 3/323 (0%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++FDE+ +R++ WN MITG + G+++ A LF+ MP +NV SWT +I G+++ +
Sbjct: 138 RVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSE 197
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL +F M + +P+ IT+++V PA G++ + + GY + GF +I+V N
Sbjct: 198 ALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFD-NIYVCNAT 256
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
I+ Y+KCG I A +LFE++ +R NL SW S+I A HG EA+ F +M + KP
Sbjct: 257 IEMYSKCGMIDVAKRLFEELGNQR-NLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKP 315
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ VTF+ +L AC HGG+V +G + F M E ++ P ++HYGC+ID+LGR G+L++A +
Sbjct: 316 DAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDL 375
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P + + VVW TLLGACSFHGNVE+ E + + ++E G+ V+M NI A +
Sbjct: 376 IKTMPMK-PDAVVWGTLLGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEK 434
Query: 307 YGDAERLRRVVDERNALKFPGRS 329
+ R+R+++ + K G S
Sbjct: 435 WDGVLRMRKLMKKETMTKAAGYS 457
>sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350,
chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=3 SV=2
Length = 613
Score = 233 bits (595), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 201/332 (60%), Gaps = 8/332 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D LFD +P R++VTW MI G K G + +A++LF++MP R+VV++ ++ GY +
Sbjct: 268 IEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQN 327
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY-GEKRGFNAFHI 120
AL +F M + P + T++ V PAI Q G + +H Y EK+ + +
Sbjct: 328 KYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKL 387
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V+ LID Y+KCG I A+ +FE I E K++ W ++I G A+HG+G+ A + +++
Sbjct: 388 GVA--LIDMYSKCGSIQHAMLVFEGI--ENKSIDHWNAMIGGLAIHGLGESAFDMLLQIE 443
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
++ LKP+ +TF+ VLNACSH GLV+EGL F+ M + ++ P ++HYGC++D+L R+G +
Sbjct: 444 RLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSI 503
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG-GDYVLMYN 299
E A+ + +P E N V+WRT L ACS H E GE V + ++ ++ GY YVL+ N
Sbjct: 504 ELAKNLIEEMPVE-PNDVIWRTFLTACSHHKEFETGELVAKHLI-LQAGYNPSSYVLLSN 561
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ A + D R+R ++ ER K PG S +
Sbjct: 562 MYASFGMWKDVRRVRTMMKERKIEKIPGCSWI 593
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 143/286 (50%), Gaps = 22/286 (7%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDGYTRMNRS 64
++FD +P+R+ V++N MI G VK G + AR LF+ MP +N++SW +I GY + +
Sbjct: 177 QMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDG 236
Query: 65 -NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
+ A LF M E I+ ++ ++G + + + + +R +
Sbjct: 237 VDIASKLFADM-----PEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTW----- 286
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
+ID YAK G + A LF+ + +++V++ S+++G+ + EA+E F M+K
Sbjct: 287 ATMIDGYAKLGFVHHAKTLFDQMP--HRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKES 344
Query: 184 -LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242
L P+ T + VL A + G + + + +VE+ L K LIDM + G ++
Sbjct: 345 HLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGG-KLGVALIDMYSKCGSIQH 403
Query: 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
A V GI E ++ W ++G + HG +GE +L++ER
Sbjct: 404 AMLVFEGI--ENKSIDHWNAMIGGLAIHG---LGESAFDMLLQIER 444
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 94/213 (44%), Gaps = 42/213 (19%)
Query: 84 EITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC-------- 135
+ ++ V A + G V+ IHG+ +K G + + + NCLI Y KCGC
Sbjct: 121 KFSLSLVLKACSRLGFVKGGMQIHGFLKKTGLWS-DLFLQNCLIGLYLKCGCLGLSRQMF 179
Query: 136 -----------------------IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEA 172
I SA +LF+ + +E KNL+SW S+ISG+A +
Sbjct: 180 DRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYA---QTSDG 236
Query: 173 VENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLID 232
V+ ++ + + + +++ S+++ G +E+ FD M D+ + +ID
Sbjct: 237 VDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRR-----DVVTWATMID 291
Query: 233 MLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
+ G + A+ + +P +VV + +++
Sbjct: 292 GYAKLGFVHHAKTLFDQMPHR--DVVAYNSMMA 322
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 233 bits (595), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 120/330 (36%), Positives = 192/330 (58%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + ++FD L +R +V+W MI+G + G L+ +R LF++M ++VV W +I G +
Sbjct: 308 IHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQA 367
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R ALALF+ M T+P EIT++ A Q G + IH Y EK + ++
Sbjct: 368 KRGQDALALFQEMQTSN-TKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSL-SLNVA 425
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ L+D YAKCG I AL +F I + +N +++T+II G A+HG A+ F M
Sbjct: 426 LGTSLVDMYAKCGNISEALSVFHGI--QTRNSLTYTAIIGGLALHGDASTAISYFNEMID 483
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ P+ +TF+ +L+AC HGG+++ G +F +M + P +KHY ++D+LGRAG LE
Sbjct: 484 AGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLE 543
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A+++ +P E + VW LL C HGNVE+GE+ +K+LE++ G YVL+ +
Sbjct: 544 EADRLMESMPME-ADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMY 602
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ DA+R RR+++ER K PG S +
Sbjct: 603 GEANMWEDAKRARRMMNERGVEKIPGCSSI 632
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 145/284 (51%), Gaps = 38/284 (13%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N I G++E AR +F+E P R++VSW +I+GY ++ + A+ +++ M + E
Sbjct: 195 NASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMES-EGV 253
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+P ++T++ + + GD+ + + Y ++ G I + N L+D ++KCG I A
Sbjct: 254 KPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLR-MTIPLVNALMDMFSKCGDIHEAR 312
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGM-------------------------------G 169
++F+++ E++ +VSWT++ISG+A G+ G
Sbjct: 313 RIFDNL--EKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRG 370
Query: 170 KEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC 229
++A+ F+ MQ KP+ +T + L+ACS G ++ G+ + + +E+ + ++
Sbjct: 371 QDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGI-WIHRYIEKYSLSLNVALGTS 429
Query: 230 LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNV 273
L+DM + G + +A V GI + N + + ++G + HG+
Sbjct: 430 LVDMYAKCGNISEALSVFHGI--QTRNSLTYTAIIGGLALHGDA 471
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 127/258 (49%), Gaps = 18/258 (6%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV--ACEYTEPSEITILAV 90
L+Y+ + + + N+ SW I G++ + L+++M+ C + P T +
Sbjct: 103 LDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVL 162
Query: 91 FPAIWQNGDVRNCQLIH---GYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS 147
F D+R L H G+ K HV N I +A CG + +A K+F++
Sbjct: 163 FKVC---ADLRLSSLGHMILGHVLKLRLELVS-HVHNASIHMFASCGDMENARKVFDESP 218
Query: 148 VERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEG 207
V ++LVSW +I+G+ G ++A+ ++ M+ +KP+ VT + ++++CS G + G
Sbjct: 219 V--RDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRG 276
Query: 208 LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC 267
+F++ V+E + I L+DM + G + +A ++ + E +V W T++
Sbjct: 277 KEFYE-YVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNL--EKRTIVSWTTMISGY 333
Query: 268 SFHGNVEMGERVTRKILE 285
+ G ++ V+RK+ +
Sbjct: 334 ARCGLLD----VSRKLFD 347
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 233 bits (593), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/315 (37%), Positives = 200/315 (63%), Gaps = 5/315 (1%)
Query: 17 LVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVA 76
+V WNVMI G ++ G+ + AR LF++M R+VVSW +I GY+ A+ +FR M
Sbjct: 208 IVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKK 267
Query: 77 CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136
+ P+ +T+++V PAI + G + + +H Y E G + + + LID Y+KCG I
Sbjct: 268 GD-IRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDV-LGSALIDMYSKCGII 325
Query: 137 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLN 196
A+ +FE + R+N+++W+++I+GFA+HG +A++ F +M++ ++P+ V ++++L
Sbjct: 326 EKAIHVFE--RLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLT 383
Query: 197 ACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256
ACSHGGLVEEG ++F +MV + P I+HYGC++D+LGR+G L++AE+ +P + +
Sbjct: 384 ACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDD 443
Query: 257 VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRV 316
V+W+ LLGAC GNVEMG+RV +++M G YV + N+ A + + +R
Sbjct: 444 -VIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLR 502
Query: 317 VDERNALKFPGRSLV 331
+ E++ K PG SL+
Sbjct: 503 MKEKDIRKDPGCSLI 517
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 132/286 (46%), Gaps = 49/286 (17%)
Query: 32 ELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG--ALALFRRMVACEYTEPSEITILA 89
+L+YA +F +MP RN SW II G++ + A+ LF M++ E+ EP+ T +
Sbjct: 74 DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133
Query: 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE 149
V A + G ++ + IHG K GF +SN L+ Y CG + A LF +E
Sbjct: 134 VLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSN-LVRMYVMCGFMKDARVLFYKNIIE 192
Query: 150 R-------------------------------------------KNLVSWTSIISGFAMH 166
+ +++VSW ++ISG++++
Sbjct: 193 KDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLN 252
Query: 167 GMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH 226
G K+AVE F M+K ++PN VT +SVL A S G +E G ++ E+ + D
Sbjct: 253 GFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG-EWLHLYAEDSGIRIDDVL 311
Query: 227 YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
LIDM + G +E+A V +P E NV+ W ++ + HG
Sbjct: 312 GSALIDMYSKCGIIEKAIHVFERLPRE--NVITWSAMINGFAIHGQ 355
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 232 bits (592), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 120/325 (36%), Positives = 194/325 (59%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++F + R++++W ++ G V+ G L+ AR+ F++MP R+ +SWT +IDGY R N
Sbjct: 292 RIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNE 351
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
+L +FR M + P E T+++V A G + + I Y +K + V N L
Sbjct: 352 SLEIFREMQSAGMI-PDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKN-DVVVGNAL 409
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID Y KCGC A K+F D+ ++++ +WT+++ G A +G G+EA++ F +MQ + ++P
Sbjct: 410 IDMYFKCGCSEKAQKVFHDM--DQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQP 467
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +T+L VL+AC+H G+V++ KFF KM + + P + HYGC++DMLGRAG +++A ++
Sbjct: 468 DDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEI 527
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P N +VW LLGA H + M E +KILE+E G Y L+ NI AG R
Sbjct: 528 LRKMPMN-PNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKR 586
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ D +RR + + K PG SL+
Sbjct: 587 WKDLREVRRKIVDVAIKKTPGFSLI 611
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 118/260 (45%), Gaps = 32/260 (12%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL N ++ G ++ AR +F+ +V SW +I GY RM ++ L M
Sbjct: 169 NLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEME 228
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
P+ +T+L V A + D C+ +H Y + + + N L++ YA CG
Sbjct: 229 R-NLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEP-SLRLENALVNAYAACGE 286
Query: 136 IFSALKLFEDIS--------------VERKNL---------------VSWTSIISGFAMH 166
+ A+++F + VER NL +SWT +I G+
Sbjct: 287 MDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRA 346
Query: 167 GMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH 226
G E++E F MQ + P+ T +SVL AC+H G +E G ++ +++ ++ D+
Sbjct: 347 GCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIG-EWIKTYIDKNKIKNDVVV 405
Query: 227 YGCLIDMLGRAGRLEQAEKV 246
LIDM + G E+A+KV
Sbjct: 406 GNALIDMYFKCGCSEKAQKV 425
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 125/248 (50%), Gaps = 10/248 (4%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G + YA LF ++P +VV W +I G+++++ + L+ M+ E P T +
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLK-EGVTPDSHTFPFL 140
Query: 91 FPAIWQNGDVRNC-QLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE 149
+ ++G C + +H + K G + +++V N L+ Y+ CG + A +F+
Sbjct: 141 LNGLKRDGGALACGKKLHCHVVKFGLGS-NLYVQNALVKMYSLCGLMDMARGVFDRRC-- 197
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL- 208
++++ SW +ISG+ +E++E M++ ++ P VT L VL+ACS + ++ L
Sbjct: 198 KEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSK--VKDKDLC 255
Query: 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268
K + V EC+ P ++ L++ G ++ A ++ + + +V+ W +++
Sbjct: 256 KRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKAR--DVISWTSIVKGYV 313
Query: 269 FHGNVEMG 276
GN+++
Sbjct: 314 ERGNLKLA 321
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 231 bits (590), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 123/322 (38%), Positives = 199/322 (61%), Gaps = 13/322 (4%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEM--PCRNVVSWTGIIDGYTRMNRSNGALALF 71
+ N+ +I + +++ AR +F+ + PC VV + +I GY R NR N AL+LF
Sbjct: 161 DDNVYVCPTLINMYTECEDVDSARCVFDRIVEPC--VVCYNAMITGYARRNRPNEALSLF 218
Query: 72 RRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYA 131
R M +Y +P+EIT+L+V + G + + IH Y +K F + + V+ LID +A
Sbjct: 219 REMQG-KYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKY-VKVNTALIDMFA 276
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191
KCG + A+ +FE + K+ +W+++I +A HG ++++ FERM+ ++P+ +TF
Sbjct: 277 KCGSLDDAVSIFEKM--RYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITF 334
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
L +LNACSH G VEEG K+F +MV + ++P IKHYG ++D+L RAG LE A + +P
Sbjct: 335 LGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLP 394
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA--GVWRYGD 309
T ++WR LL ACS H N+++ E+V+ +I E++ +GGDYV++ N+ A W Y D
Sbjct: 395 ISPTP-MLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVD 453
Query: 310 AERLRRVVDERNALKFPGRSLV 331
+ LR+V+ +R A+K PG S +
Sbjct: 454 S--LRKVMKDRKAVKVPGCSSI 473
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 17/249 (6%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR-----MVACEYTEPSEI 85
+ YAR LFE M ++V + + GY+R +LF ++ YT PS +
Sbjct: 77 SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLL 136
Query: 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFED 145
AV A+ + + +H K G + +++V LI+ Y +C + SA +F+
Sbjct: 137 KACAVAKALEEG------RQLHCLSMKLGLDD-NVYVCPTLINMYTECEDVDSARCVFDR 189
Query: 146 ISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVE 205
I VE +V + ++I+G+A EA+ F MQ LKPN +T LSVL++C+ G ++
Sbjct: 190 I-VE-PCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLD 247
Query: 206 EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
G K+ K ++ +K LIDM + G L+ A + + + T W ++
Sbjct: 248 LG-KWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQ--AWSAMIV 304
Query: 266 ACSFHGNVE 274
A + HG E
Sbjct: 305 AYANHGKAE 313
Score = 35.0 bits (79), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV----VSWTGIIDG 57
L D +F+++ ++ W+ MI G+ E + +FE M NV +++ G+++
Sbjct: 281 LDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNA 340
Query: 58 YTRMNRSNGALALFRRMVA 76
+ R F +MV+
Sbjct: 341 CSHTGRVEEGRKYFSQMVS 359
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 230 bits (587), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 129/327 (39%), Positives = 202/327 (61%), Gaps = 21/327 (6%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDGYTRMNRS 64
+LF+++PERN V+W+ M+ G K G++E AR +F++MP +NVV+WT II GY
Sbjct: 237 ELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLL 296
Query: 65 NGALALFRRMVAC--EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR--GFNAFHI 120
A L +MVA ++ + I+ILA A ++G + IH ++ G NA+
Sbjct: 297 KEADRLVDQMVASGLKFDAAAVISILA---ACTESGLLSLGMRIHSILKRSNLGSNAY-- 351
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V N L+D YAKCG + A +F DI +K+LVSW +++ G +HG GKEA+E F RM+
Sbjct: 352 -VLNALLDMYAKCGNLKKAFDVFNDIP--KKDLVSWNTMLHGLGVHGHGKEAIELFSRMR 408
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ ++P++VTF++VL +C+H GL++EG+ +F M + +++P ++HYGCL+D+LGR GRL
Sbjct: 409 REGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRL 468
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
++A KV +P E NVV+W LLGAC H V++ + V +++++ G+Y L+ NI
Sbjct: 469 KEAIKVVQTMPME-PNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNI 527
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPG 327
Y AE V D R+ +K G
Sbjct: 528 ------YAAAEDWEGVADIRSKMKSMG 548
Score = 128 bits (321), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 143/285 (50%), Gaps = 48/285 (16%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D KLF+++ ER+ V+WN M+ GLVK GEL AR LF+EMP R+++SW ++DGY R
Sbjct: 170 VRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARC 229
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ A LF +M P T+ W
Sbjct: 230 REMSKAFELFEKM-------PERNTV------SW-------------------------- 250
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ ++ Y+K G + A +F+ + + KN+V+WT II+G+A G+ KEA ++M
Sbjct: 251 --STMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVA 308
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
LK + +S+L AC+ GL+ G++ +++ + + L+DM + G L+
Sbjct: 309 SGLKFDAAAVISILAACTESGLLSLGMRIH-SILKRSNLGSNAYVLNALLDMYAKCGNLK 367
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGN----VEMGERVTRK 282
+A V + IP + ++V W T+L HG+ +E+ R+ R+
Sbjct: 368 KAFDVFNDIPKK--DLVSWNTMLHGLGVHGHGKEAIELFSRMRRE 410
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 102/207 (49%), Gaps = 16/207 (7%)
Query: 104 QLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG--CIFSALKLFEDISVERKNLVSWTSIIS 161
+++H + EK G ++ I+V N LID Y++CG + A+KLFE +S ++ VSW S++
Sbjct: 137 KMMHNHIEKLGLSS-DIYVPNALIDCYSRCGGLGVRDAMKLFEKMS--ERDTVSWNSMLG 193
Query: 162 GFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVL 221
G G ++A F+ M + L +++ ++L+ + + + + F+KM E V
Sbjct: 194 GLVKAGELRDARRLFDEMPQRDL----ISWNTMLDGYARCREMSKAFELFEKMPERNTV- 248
Query: 222 PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTR 281
+ ++ +AG +E A + +P NVV W ++ + G ++ +R+
Sbjct: 249 ----SWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVD 304
Query: 282 KILEMERGYGGDYVLMYNILAGVWRYG 308
+++ G D + +ILA G
Sbjct: 305 QMV--ASGLKFDAAAVISILAACTESG 329
Score = 38.1 bits (87), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 9/167 (5%)
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
+H++ LI + C A+++F V+ N+ S+I A + +A F M
Sbjct: 51 LHIAPKLISALSLCRQTNLAVRVFN--QVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEM 108
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
Q+ L + T+ +L ACS G +K +E+ + DI LID R G
Sbjct: 109 QRFGLFADNFTYPFLLKACS-GQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGG 167
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGE-RVTRKILE 285
L + + + V W ++LG G V+ GE R R++ +
Sbjct: 168 LGVRDAMKLFEKMSERDTVSWNSMLG-----GLVKAGELRDARRLFD 209
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 228 bits (582), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 121/335 (36%), Positives = 195/335 (58%), Gaps = 8/335 (2%)
Query: 1 FLKDGSKLFDELPERNL----VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIID 56
L +G ++ + + E +L N ++ K G ++ A +F EM ++++SW II
Sbjct: 412 LLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIG 471
Query: 57 GYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN 116
GY++ +N AL+LF ++ + P E T+ V PA + IHGY + G+
Sbjct: 472 GYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYF 531
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
+ HV+N L+D YAKCG + A LF+DI+ K+LVSWT +I+G+ MHG GKEA+ F
Sbjct: 532 SDR-HVANSLVDMYAKCGALLLAHMLFDDIA--SKDLVSWTVMIAGYGMHGFGKEAIALF 588
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
+M++ ++ + ++F+S+L ACSH GLV+EG +FF+ M EC++ P ++HY C++DML R
Sbjct: 589 NQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLAR 648
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
G L +A + +P + +W LL C H +V++ E+V K+ E+E G YVL
Sbjct: 649 TGDLIKAYRFIENMPIP-PDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVL 707
Query: 297 MYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
M NI A ++ +RLR+ + +R K PG S +
Sbjct: 708 MANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWI 742
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 143/255 (56%), Gaps = 8/255 (3%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
ERN V N ++ +K ++ AR +F+EM R+V+SW II+GY + L++F +
Sbjct: 228 ERNSVG-NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQ 286
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M+ E TI++VF + + + +H G K F+ N L+D Y+KC
Sbjct: 287 MLV-SGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSR-EDRFCNTLLDMYSKC 344
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + SA +F ++S +++VS+TS+I+G+A G+ EAV+ FE M++ + P+ T +
Sbjct: 345 GDLDSAKAVFREMS--DRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTA 402
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
VLN C+ L++EG K + ++E ++ DI L+DM + G +++AE V S +
Sbjct: 403 VLNCCARYRLLDEG-KRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEM--R 459
Query: 254 ITNVVVWRTLLGACS 268
+ +++ W T++G S
Sbjct: 460 VKDIISWNTIIGGYS 474
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 106/216 (49%), Gaps = 5/216 (2%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G+L+ A +F+E+ + W +++ + +G++ LF++M++ E T V
Sbjct: 143 GDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMS-SGVEMDSYTFSCV 201
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
+ V + +HG+ K GF + V N L+ Y K + SA K+F++++
Sbjct: 202 SKSFSSLRSVHGGEQLHGFILKSGFGERN-SVGNSLVAFYLKNQRVDSARKVFDEMT--E 258
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
++++SW SII+G+ +G+ ++ + F +M ++ + T +SV C+ L+ G
Sbjct: 259 RDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAV 318
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
V+ C D + L+DM + G L+ A+ V
Sbjct: 319 HSIGVKACFSRED-RFCNTLLDMYSKCGDLDSAKAV 353
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/330 (38%), Positives = 193/330 (58%), Gaps = 11/330 (3%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
+LFD +P RN+ TWN MITG + G++ A++LF++MP R+ VSW +I GY++ S
Sbjct: 331 AKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHS 390
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQL---IHGYGEKRGFNAFHIH 121
AL LF +M E + + A+ DV +L +HG K G+
Sbjct: 391 FEALRLFVQM----EREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYET-GCF 445
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N L+ Y KCG I A LF++++ K++VSW ++I+G++ HG G+ A+ FE M++
Sbjct: 446 VGNALLLMYCKCGSIEEANDLFKEMA--GKDIVSWNTMIAGYSRHGFGEVALRFFESMKR 503
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
LKP+ T ++VL+ACSH GLV++G ++F M ++ V+P+ +HY C++D+LGRAG LE
Sbjct: 504 EGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLE 563
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A + +P E + +W TLLGA HGN E+ E KI ME G YVL+ N+
Sbjct: 564 DAHNLMKNMPFE-PDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLY 622
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+GD +LR + ++ K PG S +
Sbjct: 623 ASSGRWGDVGKLRVRMRDKGVKKVPGYSWI 652
Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 147/290 (50%), Gaps = 32/290 (11%)
Query: 1 FLKDGS-----KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGII 55
+L++G KLFDE+PER+LV+WNVMI G V+ L AR LFE MP R+V SW ++
Sbjct: 105 YLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTML 164
Query: 56 DGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF 115
GY + + A ++F RM E ++++ A+ A QN + ++ E
Sbjct: 165 SGYAQNGCVDDARSVFDRM-----PEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWAL 219
Query: 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
++ NCL+ + K I A + F+ ++V +++VSW +II+G+A G EA +
Sbjct: 220 VSW-----NCLLGGFVKKKKIVEARQFFDSMNV--RDVVSWNTIITGYAQSGKIDEARQL 272
Query: 176 FER--MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDM 233
F+ +Q V T+ ++++ +VEE + FDKM E EV + ++
Sbjct: 273 FDESPVQDV------FTWTAMVSGYIQNRMVEEARELFDKMPERNEV-----SWNAMLAG 321
Query: 234 LGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
+ R+E A+++ +P NV W T++ + G + + + K+
Sbjct: 322 YVQGERMEMAKELFDVMPCR--NVSTWNTMITGYAQCGKISEAKNLFDKM 369
Score = 107 bits (268), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 153/318 (48%), Gaps = 29/318 (9%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
+ + FD + R++V+WN +ITG + G+++ AR LF+E P ++V +WT ++ GY +
Sbjct: 237 EARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRM 296
Query: 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS 123
A LF +M E +E++ A+ Q + + + R + +
Sbjct: 297 VEEARELFDKM-----PERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTW----- 346
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N +I YA+CG I A LF+ + +++ VSW ++I+G++ G EA+ F +M++
Sbjct: 347 NTMITGYAQCGKISEAKNLFDKMP--KRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREG 404
Query: 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC-----LIDMLGRAG 238
+ NR +F S L+ C+ +E G + ++V+ GC L+ M + G
Sbjct: 405 GRLNRSSFSSALSTCADVVALELGKQLHGRLVKGG------YETGCFVGNALLLMYCKCG 458
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER-GYGGDYVLM 297
+E+A + + + ++V W T++ S HG GE R M+R G D M
Sbjct: 459 SIEEANDLFKEMAGK--DIVSWNTMIAGYSRHG---FGEVALRFFESMKREGLKPDDATM 513
Query: 298 YNILAGVWRYGDAERLRR 315
+L+ G ++ R+
Sbjct: 514 VAVLSACSHTGLVDKGRQ 531
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 123/273 (45%), Gaps = 45/273 (16%)
Query: 3 KDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
K +K + + ++ WNV I+ ++ G A +F+ MP + VS+ G+I GY R
Sbjct: 50 KSQTKPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLR-- 107
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV 122
NG L R++ + E E +++ I G VRN L G+ R F I
Sbjct: 108 --NGEFELARKL----FDEMPERDLVSWNVMI--KGYVRNRNL----GKAREL--FEIMP 153
Query: 123 S------NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
N ++ YA+ GC+ A +F+ + KN VSW +++S + V+N
Sbjct: 154 ERDVCSWNTMLSGYAQNGCVDDARSVFDRMP--EKNDVSWNALLSAY---------VQNS 202
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVE-----EGLKFFDKMVEECEVLPDIKHYGCLI 231
+ + +L +R + V C GG V+ E +FFD M + D+ + +I
Sbjct: 203 KMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSM-----NVRDVVSWNTII 257
Query: 232 DMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
++G++++A ++ P + +V W ++
Sbjct: 258 TGYAQSGKIDEARQLFDESP--VQDVFTWTAMV 288
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 224 bits (572), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 116/325 (35%), Positives = 189/325 (58%), Gaps = 5/325 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+ F ++ RNL M++G K G L+ A+ +F++ +++V WT +I Y +
Sbjct: 268 EFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQE 327
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL +F M C +P +++ +V A G + + +H G + + ++N L
Sbjct: 328 ALRVFEEM-CCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLES-ELSINNAL 385
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
I+ YAKCG + + +FE + R+N+VSW+S+I+ +MHG +A+ F RM++ ++P
Sbjct: 386 INMYAKCGGLDATRDVFEKMP--RRNVVSWSSMINALSMHGEASDALSLFARMKQENVEP 443
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
N VTF+ VL CSH GLVEEG K F M +E + P ++HYGC++D+ GRA L +A +V
Sbjct: 444 NEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEV 503
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
+P +NVV+W +L+ AC HG +E+G+ ++ILE+E + G VLM NI A R
Sbjct: 504 IESMPVA-SNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQR 562
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ D +RRV++E+N K G S +
Sbjct: 563 WEDVRNIRRVMEEKNVFKEKGLSRI 587
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 125/270 (46%), Gaps = 34/270 (12%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G + YAR++F+EM R+VV+W +I+ Y R + A LF M P E+ + +
Sbjct: 160 GRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVM-PDEMILCNI 218
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV-- 148
A + G++R + I+ + + H+ L+ YA GC+ A + F +SV
Sbjct: 219 VSACGRTGNMRYNRAIYEFLIENDVR-MDTHLLTALVTMYAGAGCMDMAREFFRKMSVRN 277
Query: 149 ---------------------------ERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
E+K+LV WT++IS + +EA+ FE M
Sbjct: 278 LFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCC 337
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KP+ V+ SV++AC++ G++++ K+ + + ++ LI+M + G L+
Sbjct: 338 SGIKPDVVSMFSVISACANLGILDKA-KWVHSCIHVNGLESELSINNALINMYAKCGGLD 396
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHG 271
V +P NVV W +++ A S HG
Sbjct: 397 ATRDVFEKMPRR--NVVSWSSMINALSMHG 424
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 3/120 (2%)
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
+D YA CG I A +F+++S +++V+W ++I + G+ EA + FE M+ +
Sbjct: 152 FMDMYASCGRINYARNVFDEMS--HRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVM 209
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
P+ + ++++AC G + ++ ++E +V D L+ M AG ++ A +
Sbjct: 210 PDEMILCNIVSACGRTGNMRYNRAIYEFLIEN-DVRMDTHLLTALVTMYAGAGCMDMARE 268
>sp|Q9FHR3|PP403_ARATH Putative pentatricopeptide repeat-containing protein At5g37570
OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1
Length = 550
Score = 224 bits (571), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 127/362 (35%), Positives = 195/362 (53%), Gaps = 37/362 (10%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR- 60
L++ +FD +PERNL +WN ++ GLVK G+L A+ LF+EMP R+++S+T +IDGY +
Sbjct: 192 LEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIISYTSMIDGYAKG 251
Query: 61 ------------------------------MNRSNGALALFRRMVACEYTEPSEITILAV 90
+ N A +F M A + +P E ++ +
Sbjct: 252 GDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCA-KNVKPDEFIMVGL 310
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH-VSNCLIDTYAKCGCIFSALKLFEDISVE 149
A Q G C+ + Y +R N F H V LID AKCG + A KLFE++
Sbjct: 311 MSACSQMGCFELCEKVDSYLHQR-MNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEMP-- 367
Query: 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
+++LVS+ S++ G A+HG G EA+ FE+M + P+ V F +L C LVEEGL+
Sbjct: 368 QRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEGLR 427
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
+F+ M ++ +L HY C++++L R G+L++A ++ +P E + W +LLG CS
Sbjct: 428 YFELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFE-AHASAWGSLLGGCSL 486
Query: 270 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
HGN E+ E V R + E+E G YVL+ NI A + R+ D LR ++E K GRS
Sbjct: 487 HGNTEIAEVVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITKICGRS 546
Query: 330 LV 331
+
Sbjct: 547 WI 548
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 127/272 (46%), Gaps = 14/272 (5%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
++++V + K +L AR +F EMP RN VSWT ++ Y + A ++F
Sbjct: 142 DKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVVAYVKSGELEEAKSMFDL 201
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133
M E + + A+ + ++GD+ N + + KR ++ +ID YAK
Sbjct: 202 M-----PERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIISY-----TSMIDGYAKG 251
Query: 134 GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193
G + SA LFE+ ++ +W+++I G+A +G EA + F M +KP+ +
Sbjct: 252 GDMVSARDLFEE--ARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVG 309
Query: 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253
+++ACS G E K + + LIDM + G +++A K+ +P
Sbjct: 310 LMSACSQMGCFELCEKVDSYLHQRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEMPQR 369
Query: 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
++V + +++ + HG R+ K+++
Sbjct: 370 --DLVSYCSMMEGMAIHGCGSEAIRLFEKMVD 399
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 129/326 (39%), Gaps = 51/326 (15%)
Query: 39 LFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNG 98
+FE +P W +I GY+ +++ RM+ P E T V NG
Sbjct: 65 VFERVPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNG 124
Query: 99 DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 158
VR +HG + GF+ + V +D Y KC +FSA K+F ++ +N VSWT+
Sbjct: 125 QVRVGSSVHGLVLRIGFDK-DVVVGTSFVDFYGKCKDLFSARKVFGEMP--ERNAVSWTA 181
Query: 159 IISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEEC 218
++ + G +EA F+ M + N ++ ++++ G + K FD+M +
Sbjct: 182 LVVAYVKSGELEEAKSMFDLMP----ERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKR- 236
Query: 219 EVLPDIKHYGCLIDMLGRAGRLEQAEKV--------------------ASGIPSEITNV- 257
DI Y +ID + G + A + +G P+E V
Sbjct: 237 ----DIISYTSMIDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVF 292
Query: 258 ------------VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
+ L+ ACS G E+ E+V + + + YV+ I
Sbjct: 293 SEMCAKNVKPDEFIMVGLMSACSQMGCFELCEKVDSYLHQRMNKFSSHYVVPALIDMNA- 351
Query: 306 RYGDAERLRRVVDERNALKFPGRSLV 331
+ G +R ++ +E P R LV
Sbjct: 352 KCGHMDRAAKLFEE-----MPQRDLV 372
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 222 bits (566), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 190/330 (57%), Gaps = 4/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D +LFD + E++ VTW M+ G + E AR + MP +++V+W +I Y +
Sbjct: 283 IEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQN 342
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ N AL +F + + + ++IT+++ A Q G + + IH Y +K G + H
Sbjct: 343 GKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIR-MNFH 401
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V++ LI Y+KCG + + ++F SVE++++ W+++I G AMHG G EAV+ F +MQ+
Sbjct: 402 VTSALIHMYSKCGDLEKSREVFN--SVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQE 459
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+KPN VTF +V ACSH GLV+E F +M ++P+ KHY C++D+LGR+G LE
Sbjct: 460 ANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLE 519
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A K +P + VW LLGAC H N+ + E ++LE+E G +VL+ NI
Sbjct: 520 KAVKFIEAMPIP-PSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIY 578
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + ++ + LR+ + K PG S +
Sbjct: 579 AKLGKWENVSELRKHMRVTGLKKEPGCSSI 608
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 126/256 (49%), Gaps = 6/256 (2%)
Query: 24 ITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPS 83
+ L + LEYAR +F+E+P N +W +I Y ++ F MV+ P+
Sbjct: 71 MAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPN 130
Query: 84 EITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLF 143
+ T + A + + Q +HG K + + V+N LI Y CG + SA K+F
Sbjct: 131 KYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGS-DVFVANSLIHCYFSCGDLDSACKVF 189
Query: 144 EDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGL 203
+++ K++VSW S+I+GF G +A+E F++M+ +K + VT + VL+AC+
Sbjct: 190 --TTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRN 247
Query: 204 VEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTL 263
+E G + +EE V ++ ++DM + G +E A+++ + E + V W T+
Sbjct: 248 LEFGRQVCS-YIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAM--EEKDNVTWTTM 304
Query: 264 LGACSFHGNVEMGERV 279
L + + E V
Sbjct: 305 LDGYAISEDYEAAREV 320
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 140/281 (49%), Gaps = 35/281 (12%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N +I G+L+ A +F + ++VVSW +I+G+ + + AL LF++M + E
Sbjct: 170 NSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMES-EDV 228
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+ S +T++ V A + ++ + + Y E+ N ++ ++N ++D Y KCG I A
Sbjct: 229 KASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNV-NLTLANAMLDMYTKCGSIEDAK 287
Query: 141 KLFEDI-----------------------------SVERKNLVSWTSIISGFAMHGMGKE 171
+LF+ + S+ +K++V+W ++IS + +G E
Sbjct: 288 RLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNE 347
Query: 172 AVENFERMQ-KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCL 230
A+ F +Q + +K N++T +S L+AC+ G +E G ++ +++ + + L
Sbjct: 348 ALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELG-RWIHSYIKKHGIRMNFHVTSAL 406
Query: 231 IDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
I M + G LE++ +V + + E +V VW ++G + HG
Sbjct: 407 IHMYSKCGDLEKSREVFNSV--EKRDVFVWSAMIGGLAMHG 445
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 222 bits (566), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 115/302 (38%), Positives = 192/302 (63%), Gaps = 6/302 (1%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G++ A +F++MP +++V+W +I+G+ + ALAL+ M + + +P TI+++
Sbjct: 170 GDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNS-KGIKPDGFTIVSL 228
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A + G + + +H Y K G ++H SN L+D YA+CG + A LF+++
Sbjct: 229 LSACAKIGALTLGKRVHVYMIKVGLTR-NLHSSNVLLDLYARCGRVEEAKTLFDEMV--D 285
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFLSVLNACSHGGLVEEGLK 209
KN VSWTS+I G A++G GKEA+E F+ M+ L P +TF+ +L ACSH G+V+EG +
Sbjct: 286 KNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFE 345
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269
+F +M EE ++ P I+H+GC++D+L RAG++++A + +P + NVV+WRTLLGAC+
Sbjct: 346 YFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQ-PNVVIWRTLLGACTV 404
Query: 270 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
HG+ ++ E +IL++E + GDYVL+ N+ A R+ D +++R+ + K PG S
Sbjct: 405 HGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHS 464
Query: 330 LV 331
LV
Sbjct: 465 LV 466
Score = 111 bits (277), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 124/241 (51%), Gaps = 9/241 (3%)
Query: 33 LEYARSLFE--EMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
+ YA +F E P NV W +I GY + S A +L+R M EP T +
Sbjct: 69 MSYAHKVFSKIEKPI-NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFL 127
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
A+ DVR + IH + GF + I+V N L+ YA CG + SA K+F+ +
Sbjct: 128 IKAVTTMADVRLGETIHSVVIRSGFGSL-IYVQNSLLHLYANCGDVASAYKVFDKMP--E 184
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210
K+LV+W S+I+GFA +G +EA+ + M +KP+ T +S+L+AC+ G + G +
Sbjct: 185 KDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRV 244
Query: 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270
M+ + + ++ L+D+ R GR+E+A+ + + + N V W +L+ + +
Sbjct: 245 HVYMI-KVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDK--NSVSWTSLIVGLAVN 301
Query: 271 G 271
G
Sbjct: 302 G 302
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 25/185 (13%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
RNL + NV++ + G +E A++LF+EM +N VSWT +I G A+ LF+ M
Sbjct: 255 RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYM 314
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF-----------HIHVS 123
+ E P EIT + + A G V K GF F I
Sbjct: 315 ESTEGLLPCEITFVGILYACSHCGMV-----------KEGFEYFRRMREEYKIEPRIEHF 363
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
C++D A+ G + A + + + ++ N+V W +++ +HG A F R+Q +
Sbjct: 364 GCMVDLLARAGQVKKAYEYIKSMPMQ-PNVVIWRTLLGACTVHGDSDLA--EFARIQILQ 420
Query: 184 LKPNR 188
L+PN
Sbjct: 421 LEPNH 425
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 221 bits (564), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 120/330 (36%), Positives = 191/330 (57%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L + K+FDE+P+R+ V VMI + G ++ A LF+++ ++ V WT +IDG R
Sbjct: 174 LVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRN 233
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
N AL LFR M E +E T + V A G + + +H + E + +
Sbjct: 234 KEMNKALELFREM-QMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNF- 291
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V N LI+ Y++CG I A ++F + K+++S+ ++ISG AMHG EA+ F M
Sbjct: 292 VGNALINMYSRCGDINEARRVFR--VMRDKDVISYNTMISGLAMHGASVEAINEFRDMVN 349
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+PN+VT +++LNACSHGGL++ GL+ F+ M V P I+HYGC++D+LGR GRLE
Sbjct: 350 RGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLE 409
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A + IP E ++++ TLL AC HGN+E+GE++ +++ E E G YVL+ N+
Sbjct: 410 EAYRFIENIPIEPDHIMLG-TLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLY 468
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ ++ +R + + K PG S +
Sbjct: 469 ASSGKWKESTEIRESMRDSGIEKEPGCSTI 498
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 126/271 (46%), Gaps = 44/271 (16%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
++YA +F + NV +T +IDG+ RS ++L+ RM+ P I +V
Sbjct: 77 VDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIH-NSVLPDNYVITSVLK 135
Query: 93 AIWQNGDVRNCQLIH------GYGEKR--GFNAFHIH----------------------V 122
A D++ C+ IH G+G R G I+
Sbjct: 136 AC----DLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVA 191
Query: 123 SNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182
+ +I+ Y++CG I AL+LF+D+ + K+ V WT++I G + +A+E F MQ
Sbjct: 192 ATVMINCYSECGFIKEALELFQDVKI--KDTVCWTAMIDGLVRNKEMNKALELFREMQME 249
Query: 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY--GCLIDMLGRAGRL 240
+ N T + VL+ACS G +E G ++ VE + ++ ++ LI+M R G +
Sbjct: 250 NVSANEFTAVCVLSACSDLGALELG-RWVHSFVENQRM--ELSNFVGNALINMYSRCGDI 306
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
+A +V + + +V+ + T++ + HG
Sbjct: 307 NEARRVFRVMRDK--DVISYNTMISGLAMHG 335
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 221 bits (563), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 197/332 (59%), Gaps = 9/332 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDG 57
L G ++ L R + ++T LV ++G ++YA +F MP RNVVSW+ +I
Sbjct: 198 LMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIAC 257
Query: 58 YTRMNRSNGALALFRRMV-ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN 116
Y + ++ AL FR M+ + + P+ +T+++V A + +LIHGY +RG +
Sbjct: 258 YAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLD 317
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
+ + V + L+ Y +CG + ++F+ + +++VSW S+IS + +HG GK+A++ F
Sbjct: 318 SI-LPVISALVTMYGRCGKLEVGQRVFDRM--HDRDVVSWNSLISSYGVHGYGKKAIQIF 374
Query: 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236
E M P VTF+SVL ACSH GLVEEG + F+ M + + P I+HY C++D+LGR
Sbjct: 375 EEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGR 434
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
A RL++A K+ + +E VW +LLG+C HGNVE+ ER +R++ +E G+YVL
Sbjct: 435 ANRLDEAAKMVQDMRTE-PGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVL 493
Query: 297 MYNILAGVWRYGDAERLRRVVDERNALKFPGR 328
+ +I A + + +R++++++ R K PGR
Sbjct: 494 LADIYAEAQMWDEVKRVKKLLEHRGLQKLPGR 525
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 119/249 (47%), Gaps = 17/249 (6%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
G ++YAR +F++ R + W + T L L+ +M E T V
Sbjct: 126 GSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIG-VESDRFTYTYV 184
Query: 91 FPAIWQNGDVRNCQL----IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI 146
A + N + IH + +RG+++ H+++ L+D YA+ GC+ A +F +
Sbjct: 185 LKACVASECTVNHLMKGKEIHAHLTRRGYSS-HVYIMTTLVDMYARFGCVDYASYVFGGM 243
Query: 147 SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV--LKPNRVTFLSVLNACSHGGLV 204
V +N+VSW+++I+ +A +G EA+ F M + PN VT +SVL AC+ +
Sbjct: 244 PV--RNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAAL 301
Query: 205 EEGLKFFDKMVEEC--EVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
E+G ++ +LP I L+ M GR G+LE ++V + +VV W +
Sbjct: 302 EQGKLIHGYILRRGLDSILPVI---SALVTMYGRCGKLEVGQRVFDRMHDR--DVVSWNS 356
Query: 263 LLGACSFHG 271
L+ + HG
Sbjct: 357 LISSYGVHG 365
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 81/187 (43%), Gaps = 19/187 (10%)
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
LI Y+ G + A K+F+ ++ + W ++ + G G+E + + +M ++ ++
Sbjct: 118 LIGMYSDLGSVDYARKVFD--KTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVE 175
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG---------CLIDMLGR 236
+R T+ VL AC + +++ E+ + G L+DM R
Sbjct: 176 SDRFTYTYVLKACVASECT------VNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYAR 229
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296
G ++ A V G+P + NVV W ++ + +G R R+++ + + V
Sbjct: 230 FGCVDYASYVFGGMP--VRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVT 287
Query: 297 MYNILAG 303
M ++L
Sbjct: 288 MVSVLQA 294
>sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880
OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2
Length = 555
Score = 220 bits (560), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/336 (35%), Positives = 199/336 (59%), Gaps = 11/336 (3%)
Query: 1 FLKDGS-----KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGII 55
F+K G +LFDE+ + ++TW MI G +++ AR LF+ MP RN+VSW +I
Sbjct: 186 FVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMI 245
Query: 56 DGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF 115
GY + + + LF+ M A +P ++TIL+V PAI G + + H + +++
Sbjct: 246 GGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKL 305
Query: 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175
+ + V ++D Y+KCG I A ++F+++ K + SW ++I G+A++G + A++
Sbjct: 306 DK-KVKVCTAILDMYSKCGEIEKAKRIFDEMP--EKQVASWNAMIHGYALNGNARAALDL 362
Query: 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
F M + KP+ +T L+V+ AC+HGGLVEEG K+F M E + I+HYGC++D+LG
Sbjct: 363 FVTMM-IEEKPDEITMLAVITACNHGGLVEEGRKWFHVM-REMGLNAKIEHYGCMVDLLG 420
Query: 236 RAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV 295
RAG L++AE + + +P E N ++ + L AC + ++E ER+ +K +E+E G+YV
Sbjct: 421 RAGSLKEAEDLITNMPFE-PNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYV 479
Query: 296 LMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
L+ N+ A R+ D ++ V+ + A K G SL+
Sbjct: 480 LLRNLYAADKRWDDFGMVKNVMRKNQAKKEVGCSLI 515
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750,
chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2
SV=1
Length = 500
Score = 220 bits (560), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 121/331 (36%), Positives = 192/331 (58%), Gaps = 6/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
K +FD + ++N VTWN MI G ++ G+++ A +F++MP R+++SWT +I+G+ +
Sbjct: 125 FKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKK 184
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL FR M +P + I+A A G + +H Y + F ++
Sbjct: 185 GYQEEALLWFREM-QISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKN-NVR 242
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VSN LID Y +CGC+ A ++F ++ E++ +VSW S+I GFA +G E++ F +MQ+
Sbjct: 243 VSNSLIDLYCRCGCVEFARQVFYNM--EKRTVVSWNSVIVGFAANGNAHESLVYFRKMQE 300
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KP+ VTF L ACSH GLVEEGL++F M + + P I+HYGCL+D+ RAGRLE
Sbjct: 301 KGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLE 360
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHG-NVEMGERVTRKILEMERGYGGDYVLMYNI 300
A K+ +P + N VV +LL ACS HG N+ + ER+ + + ++ +YV++ N+
Sbjct: 361 DALKLVQSMPMK-PNEVVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNM 419
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A ++ A ++RR + K PG S +
Sbjct: 420 YAADGKWEGASKMRRKMKGLGLKKQPGFSSI 450
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 129/297 (43%), Gaps = 41/297 (13%)
Query: 48 VVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAI--WQNGDVRNCQL 105
VSWT I+ TR R A F M EP+ IT +A+ + +G L
Sbjct: 36 TVSWTSRINLLTRNGRLAEAAKEFSDMTLAG-VEPNHITFIALLSGCGDFTSGSEALGDL 94
Query: 106 IHGYGEKRGFNAFHIHVS-------------------------------NCLIDTYAKCG 134
+HGY K G + H+ V N +ID Y + G
Sbjct: 95 LHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSG 154
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
+ +A K+F+ + ++L+SWT++I+GF G +EA+ F MQ +KP+ V ++
Sbjct: 155 QVDNAAKMFDKMP--ERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAA 212
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
LNAC++ G + GL + + V + +++ LID+ R G +E A +V + E
Sbjct: 213 LNACTNLGALSFGL-WVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNM--EK 269
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
VV W +++ + +GN RK+ E+G+ D V L G E
Sbjct: 270 RTVVSWNSVIVGFAANGNAHESLVYFRKM--QEKGFKPDAVTFTGALTACSHVGLVE 324
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 218 bits (555), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 114/327 (34%), Positives = 190/327 (58%), Gaps = 13/327 (3%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
+ + LFDE+ ERN+ +WN MI+G G ++ A+ +F+ MP R+VVSW ++ Y
Sbjct: 221 LVDEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAH 280
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+ N L +F +M+ +P T+++V A G + + +H Y +K G
Sbjct: 281 VGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIE-IEG 339
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
++ L+D Y+KCG I AL++F S ++++ +W SIIS ++HG+GK+A+E F M
Sbjct: 340 FLATALVDMYSKCGKIDKALEVFRATS--KRDVSTWNSIISDLSVHGLGKDALEIFSEMV 397
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
KPN +TF+ VL+AC+H G++++ K F+ M V P I+HYGC++D+LGR G++
Sbjct: 398 YEGFKPNGITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKI 457
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+AE++ + IP++ ++++ +LLGAC G +E ER+ ++LE+ Y M N+
Sbjct: 458 EEAEELVNEIPADEASILL-ESLLGACKRFGQLEQAERIANRLLELNLRDSSGYAQMSNL 516
Query: 301 LA--GVW-------RYGDAERLRRVVD 318
A G W R AER+ R +D
Sbjct: 517 YASDGRWEKVIDGRRNMRAERVNRSLD 543
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 126/303 (41%), Gaps = 57/303 (18%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ + G E AR + + MP R+ VSW ++ Y + A ALF M
Sbjct: 179 NTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEM------ 232
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
E+R ++ N +I YA G + A
Sbjct: 233 ------------------------------EERNVESW-----NFMISGYAAAGLVKEAK 257
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFLSVLNACS 199
++F+ + V +++VSW ++++ +A G E +E F +M KP+ T +SVL+AC+
Sbjct: 258 EVFDSMPV--RDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACA 315
Query: 200 HGGLVEEG---LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256
G + +G + DK E E L+DM + G++++A +V +
Sbjct: 316 SLGSLSQGEWVHVYIDKHGIEIEGFLAT----ALVDMYSKCGKIDKALEVFRATSKR--D 369
Query: 257 VVVWRTLLGACSFHGNVEMGERVTRKILEM-ERGYGGDYVLMYNILAGVWRYGDAERLRR 315
V W +++ S HG +G+ EM G+ + + +L+ G ++ R+
Sbjct: 370 VSTWNSIISDLSVHG---LGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGMLDQARK 426
Query: 316 VVD 318
+ +
Sbjct: 427 LFE 429
>sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090
OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
Length = 597
Score = 218 bits (554), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 114/323 (35%), Positives = 189/323 (58%), Gaps = 4/323 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++ + FDE+ +++ W +I+G K G++E A LF EMP +N VSWT +I GY R
Sbjct: 230 MESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQ 289
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
N AL LFR+M+A +P + T + A +R+ + IHGY + I
Sbjct: 290 GSGNRALDLFRKMIALG-VKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIV 348
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+S+ LID Y+K G + ++ ++F I ++ + V W ++IS A HG+G +A+ + M K
Sbjct: 349 ISS-LIDMYSKSGSLEASERVFR-ICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIK 406
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++PNR T + +LNACSH GLVEEGL++F+ M + ++PD +HY CLID+LGRAG +
Sbjct: 407 FRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFK 466
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+ + +P E + +W +LG C HGN E+G++ ++++++ Y+L+ +I
Sbjct: 467 ELMRKIEEMPFE-PDKHIWNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSIY 525
Query: 302 AGVWRYGDAERLRRVVDERNALK 324
A ++ E+LR V+ +R K
Sbjct: 526 ADHGKWELVEKLRGVMKKRRVNK 548
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 155/312 (49%), Gaps = 36/312 (11%)
Query: 4 DGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNR 63
D K+FD++ RNL +WN M++G VK G L AR +F+ MP R+VVSW ++ GY +
Sbjct: 100 DACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGN 159
Query: 64 SNGALAL---FRR-------------MVACEYTEPSEITILA---VFPAIWQNGDVRNCQ 104
+ AL FRR + AC + ++ A V A + + V +C
Sbjct: 160 LHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCS 219
Query: 105 LIHGYGE-------KRGFNAF---HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 154
+I Y + KR F+ IH+ LI YAK G + +A KLF ++ KN V
Sbjct: 220 IIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMP--EKNPV 277
Query: 155 SWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKM 214
SWT++I+G+ G G A++ F +M + +KP + TF S L A + + G + M
Sbjct: 278 SWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYM 337
Query: 215 VEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
+ V P+ LIDM ++G LE +E+V I + + V W T++ A + HG
Sbjct: 338 I-RTNVRPNAIVISSLIDMYSKSGSLEASERVFR-ICDDKHDCVFWNTMISALAQHG--- 392
Query: 275 MGERVTRKILEM 286
+G + R + +M
Sbjct: 393 LGHKALRMLDDM 404
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 109/260 (41%), Gaps = 63/260 (24%)
Query: 96 QNGDVRNCQL---IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI------ 146
Q GD ++ + IH + + GF + +SN LI Y KCG A K+F+ +
Sbjct: 55 QCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLY 114
Query: 147 -----------------------SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
S+ +++VSW +++ G+A G EA+ ++ ++
Sbjct: 115 SWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSG 174
Query: 184 LKPNRVTFLSVLNAC-----------SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLID 232
+K N +F +L AC +HG ++ G F +V C + ID
Sbjct: 175 IKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAG--FLSNVVLSCSI----------ID 222
Query: 233 MLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG 292
+ G++E A++ + + ++ +W TL+ + G++E E++ ++ E
Sbjct: 223 AYAKCGQMESAKRCFDEMT--VKDIHIWTTLISGYAKLGDMEAAEKLFCEMPE------K 274
Query: 293 DYVLMYNILAGVWRYGDAER 312
+ V ++AG R G R
Sbjct: 275 NPVSWTALIAGYVRQGSGNR 294
>sp|Q9LJ69|PP243_ARATH Pentatricopeptide repeat-containing protein At3g18970
OS=Arabidopsis thaliana GN=PCMP-E93 PE=2 SV=1
Length = 472
Score = 218 bits (554), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 121/318 (38%), Positives = 185/318 (58%), Gaps = 17/318 (5%)
Query: 28 VKWGELEYARSLFEEMPCRNVVSWTGIIDGY-TRMNRSN----GALALFRRMVAC-EYTE 81
K G+L YAR +F+EMP R V+W +I GY + ++ N A+ LFRR C
Sbjct: 158 AKNGDLRYARKVFDEMPERTSVTWNAMIGGYCSHKDKGNHNARKAMVLFRRFSCCGSGVR 217
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA-FHIHVSNCLIDTYAKCGCIFSAL 140
P++ T++ V AI Q G + L+HGY EK GF + + L+D Y+KCGC+ +A
Sbjct: 218 PTDTTMVCVLSAISQTGLLEIGSLVHGYIEKLGFTPEVDVFIGTALVDMYSKCGCLNNAF 277
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
+FE + V KN+ +WTS+ +G A++G G E RM + +KPN +TF S+L+A H
Sbjct: 278 SVFELMKV--KNVFTWTSMATGLALNGRGNETPNLLNRMAESGIKPNEITFTSLLSAYRH 335
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
GLVEEG++ F M V P I+HYGC++D+LG+AGR+++A + +P + + ++
Sbjct: 336 IGLVEEGIELFKSMKTRFGVTPVIEHYGCIVDLLGKAGRIQEAYQFILAMPIK-PDAILL 394
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMER-------GYGGDYVLMYNILAGVWRYGDAERL 313
R+L ACS +G MGE + + +LE+ER DYV + N+LA ++ + E+L
Sbjct: 395 RSLCNACSIYGETVMGEEIGKALLEIEREDEKLSGSECEDYVALSNVLAHKGKWVEVEKL 454
Query: 314 RRVVDERNALKFPGRSLV 331
R+ + ER PG S V
Sbjct: 455 RKEMKERRIKTRPGYSFV 472
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 10/197 (5%)
Query: 13 PERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFR 72
PE ++ ++ K G L A S+FE M +NV +WT + G R N L
Sbjct: 253 PEVDVFIGTALVDMYSKCGCLNNAFSVFELMKVKNVFTWTSMATGLALNGRGNETPNLLN 312
Query: 73 RMVACEYTEPSEITILAVFPAIWQNGDVRN-CQLIHGYGEKRGFNAFHIHVSNCLIDTYA 131
RM A +P+EIT ++ A G V +L + G H C++D
Sbjct: 313 RM-AESGIKPNEITFTSLLSAYRHIGLVEEGIELFKSMKTRFGVTPVIEHY-GCIVDLLG 370
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKE---AVENFERMQKVVLK 185
K G I A + + + + + + S+ + +++G MG+E A+ ER + +
Sbjct: 371 KAGRIQEAYQFILAMPI-KPDAILLRSLCNACSIYGETVMGEEIGKALLEIEREDEKLSG 429
Query: 186 PNRVTFLSVLNACSHGG 202
++++ N +H G
Sbjct: 430 SECEDYVALSNVLAHKG 446
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 217 bits (552), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/322 (37%), Positives = 185/322 (57%), Gaps = 9/322 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYTRMNRSNGALALF 71
+ N+V N +I K +++ AR++F+ + R+VV+WT +I GY++ +N AL L
Sbjct: 405 DENMVI-NQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELL 463
Query: 72 RRMVA--CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDT 129
M C+ T P+ TI A +R + IH Y + NA + VSNCLID
Sbjct: 464 SEMFEEDCQ-TRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDM 522
Query: 130 YAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV 189
YAKCG I A +F+++ KN V+WTS+++G+ MHG G+EA+ F+ M+++ K + V
Sbjct: 523 YAKCGSISDARLVFDNMMA--KNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGV 580
Query: 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249
T L VL ACSH G++++G+++F++M V P +HY CL+D+LGRAGRL A ++
Sbjct: 581 TLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEE 640
Query: 250 IPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGD 309
+P E VVW L C HG VE+GE KI E+ + G Y L+ N+ A R+ D
Sbjct: 641 MPME-PPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKD 699
Query: 310 AERLRRVVDERNALKFPGRSLV 331
R+R ++ + K PG S V
Sbjct: 700 VTRIRSLMRHKGVKKRPGCSWV 721
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 137/311 (44%), Gaps = 44/311 (14%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
N+ N ++ + L AR +F+EM +VVSW II+ Y ++ + AL +F RM
Sbjct: 161 NVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMT 220
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF--NAFHIHVSNCLIDTYAKC 133
P IT++ V P G + +H + N F V NCL+D YAKC
Sbjct: 221 NEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMF---VGNCLVDMYAKC 277
Query: 134 G------CIFS-------------------------ALKLFEDISVER--KNLVSWTSII 160
G +FS A++LFE + E+ ++V+W++ I
Sbjct: 278 GMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAI 337
Query: 161 SGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEV 220
SG+A G+G EA+ +M +KPN VT +SVL+ C+ G + G + ++
Sbjct: 338 SGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPID 397
Query: 221 LPDIKH------YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
L H LIDM + +++ A + + + +VV W ++G S HG+
Sbjct: 398 LRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDAN 457
Query: 275 MGERVTRKILE 285
+ ++ E
Sbjct: 458 KALELLSEMFE 468
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 141/330 (42%), Gaps = 48/330 (14%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
+N+ N ++ K G ++ A ++F M ++VVSW ++ GY+++ R A+ LF +M
Sbjct: 262 QNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKM 321
Query: 75 ----------------------------------VACEYTEPSEITILAVFPAIWQNGDV 100
+ +P+E+T+++V G +
Sbjct: 322 QEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGAL 381
Query: 101 RNCQLIHGYGEK------RGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV 154
+ + IH Y K + + V N LID YAKC + +A +F+ +S + +++V
Sbjct: 382 MHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVV 441
Query: 155 SWTSIISGFAMHGMGKEAVENFERM--QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
+WT +I G++ HG +A+E M + +PN T L AC+ + G +
Sbjct: 442 TWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHA 501
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
+ + + CLIDM + G + A V + ++ N V W +L+ HG
Sbjct: 502 YALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAK--NEVTWTSLMTGYGMHG- 558
Query: 273 VEMGERVTRKILEMER-GYGGDYVLMYNIL 301
GE EM R G+ D V + +L
Sbjct: 559 --YGEEALGIFDEMRRIGFKLDGVTLLVVL 586
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 89/233 (38%), Gaps = 32/233 (13%)
Query: 80 TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSA 139
T EIT P I + + +LIH + F +++++ LI TY GC+ A
Sbjct: 25 TSAPEITP----PFIHKCKTISQVKLIHQ--KLLSFGILTLNLTSHLISTYISVGCLSHA 78
Query: 140 LKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS 199
+ L + W S+I + +G + + F M + P+ TF V AC
Sbjct: 79 VSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACG 138
Query: 200 HGGLVEEGLKFFDKMVEECEVLPDIKHY-------GCLIDMLGRAGRLEQAEKVASGIPS 252
V G E L + + L+ M R L A KV +
Sbjct: 139 EISSVRCG--------ESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEM-- 188
Query: 253 EITNVVVWRTLLGACSFHGN----VEMGERVTRKILEMERGYGGDYVLMYNIL 301
+ +VV W +++ + + G +EM R+T E G D + + N+L
Sbjct: 189 SVWDVVSWNSIIESYAKLGKPKVALEMFSRMTN-----EFGCRPDNITLVNVL 236
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 74/181 (40%), Gaps = 36/181 (19%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ D +FD + +N VTW ++TG G E A +F+EM R+
Sbjct: 529 ISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEM---------------RRI 573
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ L + AC ++ I Q + N ++ +G G +
Sbjct: 574 GFKLDGVTLLVVLYACSHSG-----------MIDQGMEYFN-RMKTVFGVSPGPEHY--- 618
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG---MGKEAVENFER 178
CL+D + G + +AL+L E++ +E +V W + +S +HG +G+ A E
Sbjct: 619 --ACLVDLLGRAGRLNAALRLIEEMPMEPPPVV-WVAFLSCCRIHGKVELGEYAAEKITE 675
Query: 179 M 179
+
Sbjct: 676 L 676
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 216 bits (550), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/319 (37%), Positives = 189/319 (59%), Gaps = 9/319 (2%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
NL N +I K GELE A LFE +P ++V+SW +I GYT MN AL LF+ M+
Sbjct: 300 NLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEML 359
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR---GFNAFHIHVSNCLIDTYAK 132
T P+++T+L++ PA G + + IH Y +KR NA + S LID YAK
Sbjct: 360 RSGET-PNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTS--LIDMYAK 416
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
CG I +A ++F S+ K+L SW ++I GFAMHG + + F RM+K+ ++P+ +TF+
Sbjct: 417 CGDIEAAHQVFN--SILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFV 474
Query: 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
+L+ACSH G+++ G F M ++ ++ P ++HYGC+ID+LG +G L + + +
Sbjct: 475 GLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSG-LFKEAEEMINMME 533
Query: 253 EITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312
+ V+W +LL AC HGNVE+GE ++++E G YVL+ NI A R+ + +
Sbjct: 534 MEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAK 593
Query: 313 LRRVVDERNALKFPGRSLV 331
R +++++ K PG S +
Sbjct: 594 TRALLNDKGMKKVPGCSSI 612
Score = 147 bits (372), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 150/276 (54%), Gaps = 11/276 (3%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+D K+FD+ P R++V++ +I G G +E A+ LF+E+P ++VVSW +I GY
Sbjct: 185 LEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAET 244
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
AL LF+ M+ P E T++ V A Q+G + + +H + + GF + ++
Sbjct: 245 GNYKEALELFKDMMKTN-VRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGS-NLK 302
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ N LID Y+KCG + +A LFE + K+++SW ++I G+ + KEA+ F+ M +
Sbjct: 303 IVNALIDLYSKCGELETACGLFERLPY--KDVISWNTLIGGYTHMNLYKEALLLFQEMLR 360
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEG---LKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
PN VT LS+L AC+H G ++ G + DK ++ ++ LIDM + G
Sbjct: 361 SGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLR--TSLIDMYAKCG 418
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
+E A +V + I + ++ W ++ + HG +
Sbjct: 419 DIEAAHQVFNSILHK--SLSSWNAMIFGFAMHGRAD 452
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 112/247 (45%), Gaps = 42/247 (17%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
L YA S+F+ + N++ W + G+ + AL L+ M++ P+ T V
Sbjct: 84 LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLL-PNSYTFPFVLK 142
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
+ ++ + Q IHG+ K G + ++V LI Y + G + A K+F+ ++
Sbjct: 143 SCAKSKAFKEGQQIHGHVLKLGCD-LDLYVHTSLISMYVQNGRLEDAHKVFD--KSPHRD 199
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
+VS+T++I G+A G +EN +++ + + V++ ++++ + G +E L+ F
Sbjct: 200 VVSYTALIKGYASRGY----IENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFK 255
Query: 213 KMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGN 272
M++ V PD E T V T++ AC+ G+
Sbjct: 256 DMMKT-NVRPD-----------------------------ESTMV----TVVSACAQSGS 281
Query: 273 VEMGERV 279
+E+G +V
Sbjct: 282 IELGRQV 288
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 7/146 (4%)
Query: 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198
A+ +F+ +++ NL+ W ++ G A+ A++ + M + L PN TF VL +C
Sbjct: 87 AISVFK--TIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSC 144
Query: 199 SHGGLVEEGLKFFDKMVE-ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNV 257
+ +EG + +++ C++ D+ + LI M + GRLE A KV P +V
Sbjct: 145 AKSKAFKEGQQIHGHVLKLGCDL--DLYVHTSLISMYVQNGRLEDAHKVFDKSPHR--DV 200
Query: 258 VVWRTLLGACSFHGNVEMGERVTRKI 283
V + L+ + G +E +++ +I
Sbjct: 201 VSYTALIKGYASRGYIENAQKLFDEI 226
>sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2
SV=1
Length = 661
Score = 215 bits (547), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 194/330 (58%), Gaps = 8/330 (2%)
Query: 5 GSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
+ FD + ++++ +WN M+ G V+ G++E A+++F++MP R++VSW ++ GY++
Sbjct: 288 AKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCD 347
Query: 65 NGAL-ALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF--NAFHIH 121
+ LF M E +P +T++++ NG++ + + +HG + +AF
Sbjct: 348 QRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAF--- 404
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+S+ LID Y KCG I A +F+ + K++ WTS+I+G A HG G++A++ F RMQ+
Sbjct: 405 LSSALIDMYCKCGIIERAFMVFK--TATEKDVALWTSMITGLAFHGNGQQALQLFGRMQE 462
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ PN VT L+VL ACSH GLVEEGL F+ M ++ P+ +HYG L+D+L RAGR+E
Sbjct: 463 EGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRVE 522
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+A+ + + +W ++L AC ++E E ++L++E G YVL+ NI
Sbjct: 523 EAKDIVQKKMPMRPSQSMWGSILSACRGGEDIETAELALTELLKLEPEKEGGYVLLSNIY 582
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A V R+G +++ R ++ R K G S V
Sbjct: 583 ATVGRWGYSDKTREAMENRGVKKTAGYSSV 612
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 153/326 (46%), Gaps = 42/326 (12%)
Query: 20 WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEY 79
WN ++ ++ G A +F MP +V S+ +I GY + S AL L+ +MV+ +
Sbjct: 169 WNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVS-DG 227
Query: 80 TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG-FNAFHIHVSNCLIDTYAKC----- 133
EP E T+L++ D+R + +HG+ E+RG + ++ +SN L+D Y KC
Sbjct: 228 IEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGL 287
Query: 134 --------------------------GCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 167
G + +A +F+ + +++LVSW S++ G++ G
Sbjct: 288 AKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMP--KRDLVSWNSLLFGYSKKG 345
Query: 168 MGKEAV-ENFERMQKV-VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIK 225
+ V E F M V +KP+RVT +S+++ ++ G + G ++ +V ++ D
Sbjct: 346 CDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHG-RWVHGLVIRLQLKGDAF 404
Query: 226 HYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
LIDM + G +E+A V + +V +W +++ +FHGN + ++ ++
Sbjct: 405 LSSALIDMYCKCGIIERAFMVFKTATEK--DVALWTSMITGLAFHGNGQQALQLFGRM-- 460
Query: 286 MERGYGGDYVLMYNILAGVWRYGDAE 311
E G + V + +L G E
Sbjct: 461 QEEGVTPNNVTLLAVLTACSHSGLVE 486
>sp|Q9FX24|PPR71_ARATH Pentatricopeptide repeat-containing protein At1g34160
OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2
Length = 581
Score = 214 bits (545), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 123/331 (37%), Positives = 197/331 (59%), Gaps = 17/331 (5%)
Query: 7 KLFDELPERNLVTWNVMITGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
+L ++ R L +++ T L+ K G+L A LF+EMP R+V SW +I G N
Sbjct: 130 QLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLFDEMPVRDVASWNALIAGLVSGN 189
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQ-LIHGYGEKRGFNAFHIH 121
R++ A+ L++RM E SE+T++A A GDV+ + + HGY ++
Sbjct: 190 RASEAMELYKRM-ETEGIRRSEVTVVAALGACSHLGDVKEGENIFHGYSND------NVI 242
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
VSN ID Y+KCG + A ++FE + +K++V+W ++I+GFA+HG A+E F++++
Sbjct: 243 VSNAAIDMYSKCGFVDKAYQVFEQFT-GKKSVVTWNTMITGFAVHGEAHRALEIFDKLED 301
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECE-VLPDIKHYGCLIDMLGRAGRL 240
+KP+ V++L+ L AC H GLVE GL F+ M C+ V ++KHYGC++D+L RAGRL
Sbjct: 302 NGIKPDDVSYLAALTACRHAGLVEYGLSVFNNMA--CKGVERNMKHYGCVVDLLSRAGRL 359
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
+A + + S I + V+W++LLGA + +VEM E +R+I EM GD+VL+ N+
Sbjct: 360 REAHDIICSM-SMIPDPVLWQSLLGASEIYSDVEMAEIASREIKEMGVNNDGDFVLLSNV 418
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ D R+R ++ + K PG S +
Sbjct: 419 YAAQGRWKDVGRVRDDMESKQVKKIPGLSYI 449
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 127/268 (47%), Gaps = 24/268 (8%)
Query: 26 GLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPS-- 83
+ +G+L +A +F +P W II G+ + + A + +R M+ + +
Sbjct: 46 AISPFGDLSFAVQIFRYIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAIC 105
Query: 84 -------EITILAVFPAIWQNG-DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
T+ A A+ + D +CQ+ +RG +A + + L+D Y+K G
Sbjct: 106 RVDALTCSFTLKACARALCSSAMDQLHCQI-----NRRGLSADSL-LCTTLLDAYSKNGD 159
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
+ SA KLF+++ V +++ SW ++I+G EA+E ++RM+ ++ + VT ++ L
Sbjct: 160 LISAYKLFDEMPV--RDVASWNALIAGLVSGNRASEAMELYKRMETEGIRRSEVTVVAAL 217
Query: 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
ACSH G V+EG F + ++ + IDM + G +++A +V +
Sbjct: 218 GACSHLGDVKEGENIFHGYSNDNVIVSN-----AAIDMYSKCGFVDKAYQVFEQFTGK-K 271
Query: 256 NVVVWRTLLGACSFHGNVEMGERVTRKI 283
+VV W T++ + HG + K+
Sbjct: 272 SVVTWNTMITGFAVHGEAHRALEIFDKL 299
Score = 38.9 bits (89), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC-RNVVSWTGIIDGYTR 60
+K+G +F N++ N I K G ++ A +FE+ ++VV+W +I G+
Sbjct: 226 VKEGENIFHGYSNDNVIVSNAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGFAV 285
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNG 98
++ AL +F ++ +P +++ LA A G
Sbjct: 286 HGEAHRALEIFDKLED-NGIKPDDVSYLAALTACRHAG 322
>sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305
OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
Length = 534
Score = 214 bits (545), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 114/325 (35%), Positives = 189/325 (58%), Gaps = 3/325 (0%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
KLFDE+P +NLVTWN ++ K G++ AR +F+EM R+VV+W+ +IDGY + N
Sbjct: 164 KLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNK 223
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
AL +F +M+ ++ +E+T+++V A G + + +H Y + + L
Sbjct: 224 ALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHL-PLTVILQTSL 282
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186
ID YAKCG I A +F SV+ + + W +II G A HG +E+++ F +M++ + P
Sbjct: 283 IDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDP 342
Query: 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246
+ +TFL +L ACSHGGLV+E FF K ++E P +HY C++D+L RAG ++ A
Sbjct: 343 DEITFLCLLAACSHGGLVKEAWHFF-KSLKESGAEPKSEHYACMVDVLSRAGLVKDAHDF 401
Query: 247 ASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306
S +P + T ++ LL C HGN+E+ E V +K++E++ G YV + N+ A +
Sbjct: 402 ISEMPIKPTGSML-GALLNGCINHGNLELAETVGKKLIELQPHNDGRYVGLANVYAINKQ 460
Query: 307 YGDAERLRRVVDERNALKFPGRSLV 331
+ A +R ++++ K G S++
Sbjct: 461 FRAARSMREAMEKKGVKKIAGHSIL 485
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 137/307 (44%), Gaps = 43/307 (14%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
E V+ + + L G+++YA ++ W +I G++ +++++ +
Sbjct: 39 EEPFVSQTLSFSALSSSGDVDYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQ 98
Query: 74 MVACEYTEPSEITILAVFPAIWQN---------GDVRNCQ---------------LIHGY 109
M+ P +T +P + ++ G +C LIH Y
Sbjct: 99 MLRFGLL-PDHMT----YPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMY 153
Query: 110 GEKRG-------FNAF---HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 159
G R F+ ++ N ++D YAK G + SA +F+++S +++V+W+S+
Sbjct: 154 GSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMS--ERDVVTWSSM 211
Query: 160 ISGFAMHGMGKEAVENFERMQKV-VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEEC 218
I G+ G +A+E F++M ++ K N VT +SV+ AC+H G + G K + + +
Sbjct: 212 IDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRG-KTVHRYILDV 270
Query: 219 EVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGER 278
+ + LIDM + G + A V + T+ ++W ++G + HG + +
Sbjct: 271 HLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQ 330
Query: 279 VTRKILE 285
+ K+ E
Sbjct: 331 LFHKMRE 337
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 213 bits (543), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 175/311 (56%), Gaps = 5/311 (1%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
+ T K E+E AR LF+E P +++ SW +I GYT+ + A++LFR M E++
Sbjct: 358 TALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFS 417
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
P+ +TI + A Q G + + +H F + I+VS LI YAKCG I A
Sbjct: 418 -PNPVTITCILSACAQLGALSLGKWVHDLVRSTDFES-SIYVSTALIGMYAKCGSIAEAR 475
Query: 141 KLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200
+LF+ ++ +KN V+W ++ISG+ +HG G+EA+ F M + P VTFL VL ACSH
Sbjct: 476 RLFDLMT--KKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSH 533
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
GLV+EG + F+ M+ P +KHY C++D+LGRAG L++A + + E VW
Sbjct: 534 AGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIE-PGSSVW 592
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320
TLLGAC H + + V+ K+ E++ G +VL+ NI + Y A +R+ +R
Sbjct: 593 ETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKR 652
Query: 321 NALKFPGRSLV 331
K PG +L+
Sbjct: 653 KLAKAPGYTLI 663
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 128/258 (49%), Gaps = 14/258 (5%)
Query: 19 TWNVMITGLV----KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
+ + ++TG + K G+++ +LF E ++V++ +I GYT + +L+LF+ +
Sbjct: 254 SHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKEL 313
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
+ S T++++ P +G + IHGY K F + H VS L Y+K
Sbjct: 314 MLSGARLRSS-TLVSLVPV---SGHLMLIYAIHGYCLKSNFLS-HASVSTALTTVYSKLN 368
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
I SA KLF++ K+L SW ++ISG+ +G+ ++A+ F MQK PN VT +
Sbjct: 369 EIESARKLFDE--SPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCI 426
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L+AC+ G + G K+ +V + I LI M + G + +A ++ + +
Sbjct: 427 LSACAQLGALSLG-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKK- 484
Query: 255 TNVVVWRTLLGACSFHGN 272
N V W T++ HG
Sbjct: 485 -NEVTWNTMISGYGLHGQ 501
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 85/176 (48%), Gaps = 3/176 (1%)
Query: 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88
K+ +E AR +F+ MP ++ + W +I GY + ++ +FR ++ T T+L
Sbjct: 166 KFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLL 225
Query: 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
+ PA+ + ++R IH K G + H +V I Y+KCG I LF +
Sbjct: 226 DILPAVAELQELRLGMQIHSLATKTGCYS-HDYVLTGFISLYSKCGKIKMGSALFREF-- 282
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLV 204
+ ++V++ ++I G+ +G + ++ F+ + + T +S++ H L+
Sbjct: 283 RKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLI 338
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 213 bits (542), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/327 (34%), Positives = 184/327 (56%), Gaps = 6/327 (1%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
K+FDE+PER++++W +I + G +E A LFE +P +++V+WT ++ G+ + +
Sbjct: 205 KVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQE 264
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN-AFHIHVSNC 125
AL F RM E+T+ A Q G + +K G++ + H+ + +
Sbjct: 265 ALEYFDRMEKSG-IRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSA 323
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVL 184
LID Y+KCG + A+ +F +S+ KN+ +++S+I G A HG +EA+ F M + +
Sbjct: 324 LIDMYSKCGNVEEAVNVF--MSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEI 381
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
KPN VTF+ L ACSH GLV++G + FD M + V P HY C++D+LGR GRL++A
Sbjct: 382 KPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEAL 441
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304
++ + E + VW LLGAC H N E+ E + E+E G+Y+L+ N+ A
Sbjct: 442 ELIKTMSVE-PHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASA 500
Query: 305 WRYGDAERLRRVVDERNALKFPGRSLV 331
+G R+R+++ E+ K P S V
Sbjct: 501 GDWGGVLRVRKLIKEKGLKKTPAVSWV 527
Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 126/275 (45%), Gaps = 44/275 (16%)
Query: 35 YARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAI 94
YAR + E + RN WT +I GY + + A+A++ M E T P T A+ A
Sbjct: 101 YARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEIT-PVSFTFSALLKAC 159
Query: 95 WQNGDVRNCQLIHGYGEK-RGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI------- 146
D+ + H + RGF ++V N +ID Y KC I A K+F+++
Sbjct: 160 GTMKDLNLGRQFHAQTFRLRGF--CFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVIS 217
Query: 147 ----------------------SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
S+ K++V+WT++++GFA + +EA+E F+RM+K +
Sbjct: 218 WTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGI 277
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEV--LPDIKHY---GCLIDMLGRAGR 239
+ + VT ++AC+ G K+ D+ V+ + H LIDM + G
Sbjct: 278 RADEVTVAGYISACAQLG----ASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGN 333
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVE 274
+E+A V + ++ NV + +++ + HG +
Sbjct: 334 VEEAVNVFMSMNNK--NVFTYSSMILGLATHGRAQ 366
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 91/202 (45%), Gaps = 14/202 (6%)
Query: 78 EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIF 137
E + E+ + ++ + ++ + IHG+ ++G + ++ LI T K G
Sbjct: 40 EISNQKELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQ-SCYILTKLIRTLTKLGVPM 98
Query: 138 S--ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195
A ++ E V+ +N WT++I G+A+ G EA+ + M+K + P TF ++L
Sbjct: 99 DPYARRVIE--PVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALL 156
Query: 196 NACSHGGLVEEGLKFFDKMVEE---CEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252
AC + G +F + C V +IDM + ++ A KV +P
Sbjct: 157 KACGTMKDLNLGRQFHAQTFRLRGFCFVYVG----NTMIDMYVKCESIDCARKVFDEMPE 212
Query: 253 EITNVVVWRTLLGACSFHGNVE 274
+V+ W L+ A + GN+E
Sbjct: 213 R--DVISWTELIAAYARVGNME 232
>sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430
OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
Length = 570
Score = 213 bits (541), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 188/332 (56%), Gaps = 6/332 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L +FD + ++N+ W M+ G V G ++ AR LFE P ++VV WT +++GY +
Sbjct: 198 LDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQF 257
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
NR + AL LFR M P ++++ Q G + + IHGY + +
Sbjct: 258 NRFDEALELFRCMQTAG-IRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKV- 315
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V L+D YAKCGCI +AL++F +I + ++ SWTS+I G AM+GM A++ + M+
Sbjct: 316 VGTALVDMYAKCGCIETALEVFYEI--KERDTASWTSLIYGLAMNGMSGRALDLYYEMEN 373
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
V ++ + +TF++VL AC+HGG V EG K F M E V P +H CLID+L RAG L+
Sbjct: 374 VGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLCRAGLLD 433
Query: 242 QAEKVASGI--PSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
+AE++ + S+ T V V+ +LL A +GNV++ ERV K+ ++E + L+ +
Sbjct: 434 EAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLAS 493
Query: 300 ILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
+ A R+ D +RR + + KFPG S +
Sbjct: 494 VYASANRWEDVTNVRRKMKDLGIRKFPGCSSI 525
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 128/296 (43%), Gaps = 37/296 (12%)
Query: 21 NVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80
N ++ G++E +F+EMP R+VVSW G+I Y R A+ +F+RM
Sbjct: 85 NSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNL 144
Query: 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140
+ E TI++ A ++ + I+ + + + N L+D + KCGC+ A
Sbjct: 145 KFDEGTIVSTLSACSALKNLEIGERIYRFVVTEF--EMSVRIGNALVDMFCKCGCLDKAR 202
Query: 141 KLFED----------------ISVER-------------KNLVSWTSIISGFAMHGMGKE 171
+F+ +S R K++V WT++++G+ E
Sbjct: 203 AVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDE 262
Query: 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLI 231
A+E F MQ ++P+ +S+L C+ G +E+G K+ + E V D L+
Sbjct: 263 ALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQG-KWIHGYINENRVTVDKVVGTALV 321
Query: 232 DMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME 287
DM + G +E A +V I T W +L+ + +G M R EME
Sbjct: 322 DMYAKCGCIETALEVFYEIKERDT--ASWTSLIYGLAMNG---MSGRALDLYYEME 372
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 113/227 (49%), Gaps = 14/227 (6%)
Query: 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141
P T+ V +I + V + +HGY K G F +VSN L+ YA G I K
Sbjct: 44 PDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKAGLE-FDSYVSNSLMGMYASLGKIEITHK 102
Query: 142 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFLSVLNACSH 200
+F+++ ++++VSW +IS + +G ++A+ F+RM Q+ LK + T +S L+ACS
Sbjct: 103 VFDEMP--QRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSA 160
Query: 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW 260
+E G + + +V E E+ ++ L+DM + G L++A V + + NV W
Sbjct: 161 LKNLEIGERIYRFVVTEFEM--SVRIGNALVDMFCKCGCLDKARAVFDSMRDK--NVKCW 216
Query: 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307
+++ G V G R+ + ER D VL ++ G ++
Sbjct: 217 TSMV-----FGYVSTG-RIDEARVLFERSPVKDVVLWTAMMNGYVQF 257
>sp|Q9LVF9|PP245_ARATH Pentatricopeptide repeat-containing protein At3g21470
OS=Arabidopsis thaliana GN=PCMP-E29 PE=2 SV=1
Length = 523
Score = 211 bits (538), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 125/335 (37%), Positives = 195/335 (58%), Gaps = 16/335 (4%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
++D K F+++PE+N W++M++G + G++ AR++F + R++V W +I GY +
Sbjct: 193 MEDARKFFEDIPEKNAFVWSLMMSGYFRIGDVHEARAIFYRVFARDLVIWNTLIAGYAQN 252
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG--FNAFH 119
S+ A+ F M Y EP +T+ ++ A Q+G + + +H RG N F
Sbjct: 253 GYSDDAIDAFFNMQGEGY-EPDAVTVSSILSACAQSGRLDVGREVHSLINHRGIELNQF- 310
Query: 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179
VSN LID YAKCG + +A +FE ISV +++ S+IS A+HG GKEA+E F M
Sbjct: 311 --VSNALIDMYAKCGDLENATSVFESISV--RSVACCNSMISCLAIHGKGKEALEMFSTM 366
Query: 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+ + LKP+ +TF++VL AC HGG + EGLK F +M + +V P++KH+GCLI +LGR+G+
Sbjct: 367 ESLDLKPDEITFIAVLTACVHGGFLMEGLKIFSEMKTQ-DVKPNVKHFGCLIHLLGRSGK 425
Query: 240 LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY----- 294
L++A ++ + + N V LLGAC H + EM E+V KI+E Y
Sbjct: 426 LKEAYRLVKEMHVK-PNDTVLGALLGACKVHMDTEMAEQVM-KIIETAGSITNSYSENHL 483
Query: 295 VLMYNILAGVWRYGDAERLRRVVDERNALKFPGRS 329
+ N+ A R+ AE LR +++R K PG S
Sbjct: 484 ASISNLYAHTERWQTAEALRVEMEKRGLEKSPGLS 518
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 128/275 (46%), Gaps = 32/275 (11%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP-CRNVVSWTGIIDGYTRMNRSN 65
K+FDE+PERN+ TWN MI G + G+ A LFEE+ CRN V+W +I GY +
Sbjct: 102 KVFDEMPERNVATWNAMIGGYMSNGDAVLASGLFEEISVCRNTVTWIEMIKGYGKRIEIE 161
Query: 66 GALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125
A LF RM + +L V+ + D R + EK F V +
Sbjct: 162 KARELFERMPFELKNVKAWSVMLGVYVNNRKMEDAR--KFFEDIPEKNAF------VWSL 213
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
++ Y + G + A +F V ++LV W ++I+G+A +G +A++ F MQ +
Sbjct: 214 MMSGYFRIGDVHEARAIF--YRVFARDLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYE 271
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG---------CLIDMLGR 236
P+ VT S+L+AC+ G ++ G EV I H G LIDM +
Sbjct: 272 PDAVTVSSILSACAQSGRLDVGR----------EVHSLINHRGIELNQFVSNALIDMYAK 321
Query: 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
G LE A V I + +V +++ + HG
Sbjct: 322 CGDLENATSVFESI--SVRSVACCNSMISCLAIHG 354
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 98/205 (47%), Gaps = 17/205 (8%)
Query: 104 QLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 163
+L+H K G + + V + LI Y KCGC+ SA K+F+++ +N+ +W ++I G+
Sbjct: 66 KLLHSESIKFGVCS-DVMVGSSLISMYGKCGCVVSARKVFDEMP--ERNVATWNAMIGGY 122
Query: 164 AMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD 223
+G +AV +++ + N VT++ ++ +E+ + F++M E L +
Sbjct: 123 MSNG---DAVLASGLFEEISVCRNTVTWIEMIKGYGKRIEIEKARELFERMPFE---LKN 176
Query: 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283
+K + ++ + ++E A K IP + N VW ++ G+V + ++
Sbjct: 177 VKAWSVMLGVYVNNRKMEDARKFFEDIPEK--NAFVWSLMMSGYFRIGDVHEARAIFYRV 234
Query: 284 LEMERGYGGDYVLMYNILAGVWRYG 308
+ D V+ ++AG + G
Sbjct: 235 ------FARDLVIWNTLIAGYAQNG 253
>sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein At1g09190
OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1
Length = 484
Score = 210 bits (535), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 114/331 (34%), Positives = 189/331 (57%), Gaps = 5/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ D K+FDE+ ERN+V WN+MI G G++E LF++M R++VSW +I ++
Sbjct: 153 MGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSKC 212
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
R AL LF M+ + +P E T++ V P G + + IH E G I
Sbjct: 213 GRDREALELFCEMIDQGF-DPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKDFIT 271
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-Q 180
V N L+D Y K G + +A +F + +R+N+VSW ++ISG A++G G+ ++ F+ M +
Sbjct: 272 VGNALVDFYCKSGDLEAATAIFRKM--QRRNVVSWNTLISGSAVNGKGEFGIDLFDAMIE 329
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ + PN TFL VL CS+ G VE G + F M+E ++ +HYG ++D++ R+GR+
Sbjct: 330 EGKVAPNEATFLGVLACCSYTGQVERGEELFGLMMERFKLEARTEHYGAMVDLMSRSGRI 389
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
+A K +P N +W +LL AC HG+V++ E +++++E G G+YVL+ N+
Sbjct: 390 TEAFKFLKNMPVN-ANAAMWGSLLSACRSHGDVKLAEVAAMELVKIEPGNSGNYVLLSNL 448
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ D E++R ++ + K G+S +
Sbjct: 449 YAEEGRWQDVEKVRTLMKKNRLRKSTGQSTI 479
>sp|Q9CA73|PP119_ARATH Putative pentatricopeptide repeat-containing protein At1g74400
OS=Arabidopsis thaliana GN=PCMP-E68 PE=3 SV=1
Length = 462
Score = 210 bits (534), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/307 (38%), Positives = 182/307 (59%), Gaps = 15/307 (4%)
Query: 31 GELEYARSLFEEMPCR-NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILA 89
G+++YAR +F+E P + N+V WT +I YT S A+ LF+RM A E E + +
Sbjct: 114 GDVDYARQVFDETPEKQNIVLWTAMISAYTENENSVEAIELFKRMEA-EKIELDGVIVTV 172
Query: 90 VFPAIWQNGDVRNCQLIHGYGEKRGFN-AFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148
A G V+ + I+ KR A + + N L++ Y K G A KLF++
Sbjct: 173 ALSACADLGAVQMGEEIYSRSIKRKRRLAMDLTLRNSLLNMYVKSGETEKARKLFDE--S 230
Query: 149 ERKNLVSWTSIISGFAMHGMGKEAVENFERM------QKVVLKPNRVTFLSVLNACSHGG 202
RK++ ++TS+I G+A++G +E++E F++M Q V+ PN VTF+ VL ACSH G
Sbjct: 231 MRKDVTTYTSMIFGYALNGQAQESLELFKKMKTIDQSQDTVITPNDVTFIGVLMACSHSG 290
Query: 203 LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
LVEEG + F M+ + + P H+GC++D+ R+G L+ A + + +P + N V+WRT
Sbjct: 291 LVEEGKRHFKSMIMDYNLKPREAHFGCMVDLFCRSGHLKDAHEFINQMPIK-PNTVIWRT 349
Query: 263 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNA 322
LLGACS HGNVE+GE V R+I E++R + GDYV + NI A + + ++R V +R
Sbjct: 350 LLGACSLHGNVELGEEVQRRIFELDRDHVGDYVALSNIYASKGMWDEKSKMRDRVRKR-- 407
Query: 323 LKFPGRS 329
+ PG+S
Sbjct: 408 -RMPGKS 413
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 102/212 (48%), Gaps = 23/212 (10%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
+L N ++ VK GE E AR LF+E ++V ++T +I GY ++ +L LF++M
Sbjct: 203 DLTLRNSLLNMYVKSGETEKARKLFDESMRKDVTTYTSMIFGYALNGQAQESLELFKKMK 262
Query: 76 ACEYTE-----PSEITILAVFPAIWQNGDVRNCQ-----LIHGYGEKRGFNAFHIHVSNC 125
+ ++ P+++T + V A +G V + +I Y K F C
Sbjct: 263 TIDQSQDTVITPNDVTFIGVLMACSHSGLVEEGKRHFKSMIMDYNLKPREAHF-----GC 317
Query: 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
++D + + G + A + + + + N V W +++ ++HG VE E +Q+ + +
Sbjct: 318 MVDLFCRSGHLKDAHEFINQMPI-KPNTVIWRTLLGACSLHG----NVELGEEVQRRIFE 372
Query: 186 PNRV---TFLSVLNACSHGGLVEEGLKFFDKM 214
+R ++++ N + G+ +E K D++
Sbjct: 373 LDRDHVGDYVALSNIYASKGMWDEKSKMRDRV 404
>sp|O64766|PP185_ARATH Pentatricopeptide repeat-containing protein At2g35030,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2
SV=1
Length = 627
Score = 209 bits (532), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 189/330 (57%), Gaps = 2/330 (0%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + +LF +PER+ +WN MITG ++ E+ A LF+ MP +NV+SWT +I GY
Sbjct: 249 IDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVEN 308
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+ AL +F +M+ +P+ T +++ A + Q IH K I
Sbjct: 309 KENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEI- 367
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
V++ L++ Y+K G + +A K+F++ V +++L+SW S+I+ +A HG GKEA+E + +M+K
Sbjct: 368 VTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRK 427
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
KP+ VT+L++L ACSH GLVE+G++FF +V + + +HY CL+D+ GRAGRL+
Sbjct: 428 HGFKPSAVTYLNLLFACSHAGLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCGRAGRLK 487
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
+ + ++ + +L AC+ H V + + V +K+LE G YVLM NI
Sbjct: 488 DVTNFINCDDARLSR-SFYGAILSACNVHNEVSIAKEVVKKVLETGSDDAGTYVLMSNIY 546
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + +A +R + E+ K PG S V
Sbjct: 547 AANGKREEAAEMRMKMKEKGLKKQPGCSWV 576
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 141/267 (52%), Gaps = 14/267 (5%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
+LFDE+PERN+V+WN M+ LV+ G ++ A +LFE MP R+VVSWT ++DG + NG
Sbjct: 161 ELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAK----NG 216
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126
+ RR+ C E + I+ A+ QN + + +R F ++ N +
Sbjct: 217 KVDEARRLFDC-MPERNIISWNAMITGYAQNNRIDEADQLFQVMPERDFASW-----NTM 270
Query: 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLK 185
I + + + A LF+ + KN++SWT++I+G+ + +EA+ F +M + +K
Sbjct: 271 ITGFIRNREMNKACGLFDRMP--EKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVK 328
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN T++S+L+ACS + EG + + + +I L++M ++G L A K
Sbjct: 329 PNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIV-TSALLNMYSKSGELIAARK 387
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGN 272
+ +++ W +++ + HG+
Sbjct: 388 MFDNGLVCQRDLISWNSMIAVYAHHGH 414
Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 133/279 (47%), Gaps = 61/279 (21%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCR-NVVSWTGIIDGYTR 60
+ + KLFD LPER++VTW +ITG +K G++ AR LF+ + R NVV+WT ++ GY R
Sbjct: 62 IAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGYLR 121
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+ + A LF+ M E +++ W
Sbjct: 122 SKQLSIAEMLFQEM--------PERNVVS-----W------------------------- 143
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
N +ID YA+ G I AL+LF+++ +N+VSW S++ G EA+ FERM
Sbjct: 144 ---NTMIDGYAQSGRIDKALELFDEMP--ERNIVSWNSMVKALVQRGRIDEAMNLFERM- 197
Query: 181 KVVLKPNR--VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
P R V++ ++++ + G V+E + FD M E +I + +I +
Sbjct: 198 -----PRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPER-----NIISWNAMITGYAQNN 247
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGE 277
R+++A+++ +P + W T++ F N EM +
Sbjct: 248 RIDEADQLFQVMPER--DFASWNTMI--TGFIRNREMNK 282
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 208 bits (530), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 116/320 (36%), Positives = 193/320 (60%), Gaps = 8/320 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
ER+L + +++ + GEL ++LF+ M +++VSW +I GY + + AL +FR+
Sbjct: 528 ERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQ 587
Query: 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGF--NAFHIHVSNCLIDTYA 131
MV + I+++ VF A +R + H Y K +AF ++ LID YA
Sbjct: 588 MVLYG-IQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAF---IACSLIDMYA 643
Query: 132 KCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191
K G I + K+F ++ K+ SW ++I G+ +HG+ KEA++ FE MQ+ P+ +TF
Sbjct: 644 KNGSITQSSKVFN--GLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTF 701
Query: 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251
L VL AC+H GL+ EGL++ D+M + P++KHY C+IDMLGRAG+L++A +V +
Sbjct: 702 LGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEM 761
Query: 252 SEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311
SE +V +W++LL +C H N+EMGE+V K+ E+E +YVL+ N+ AG+ ++ D
Sbjct: 762 SEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVR 821
Query: 312 RLRRVVDERNALKFPGRSLV 331
++R+ ++E + K G S +
Sbjct: 822 KVRQRMNEMSLRKDAGCSWI 841
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 98/187 (52%), Gaps = 4/187 (2%)
Query: 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRR 73
++ LV N ++ K G + A+ +F+ +NVVSW ++ G++ ++G + R+
Sbjct: 324 DKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQ 383
Query: 74 MVA-CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK 132
M+A E + E+TIL P + + + + +H Y K+ F ++ V+N + +YAK
Sbjct: 384 MLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEF-VYNELVANAFVASYAK 442
Query: 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192
CG + A ++F I K + SW ++I G A + +++ +M+ L P+ T
Sbjct: 443 CGSLSYAQRVFHGI--RSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVC 500
Query: 193 SVLNACS 199
S+L+ACS
Sbjct: 501 SLLSACS 507
Score = 78.2 bits (191), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 119/270 (44%), Gaps = 42/270 (15%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
F+ D +LFD +PERNLV+WN MI G E + L EM N
Sbjct: 237 FVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEEN------------- 283
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+GA P T++ V P + ++ + +HG+ K + +
Sbjct: 284 ---GDGAFM------------PDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDK-EL 327
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
++N L+D Y+KCGCI +A +F+ KN+VSW +++ GF+ G + F+ ++
Sbjct: 328 VLNNALMDMYSKCGCITNAQMIFK--MNNNKNVVSWNTMVGGFSAEG---DTHGTFDVLR 382
Query: 181 KVV-----LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235
+++ +K + VT L+ + C H + LK + E + + +
Sbjct: 383 QMLAGGEDVKADEVTILNAVPVCFHESFL-PSLKELHCYSLKQEFVYNELVANAFVASYA 441
Query: 236 RAGRLEQAEKVASGIPSEITNVVVWRTLLG 265
+ G L A++V GI S+ N W L+G
Sbjct: 442 KCGSLSYAQRVFHGIRSKTVN--SWNALIG 469
Score = 78.2 bits (191), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 118/281 (41%), Gaps = 10/281 (3%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
+IT G + +R +F+ + +N+ W +I Y+R + L F M++ P
Sbjct: 126 IITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLP 185
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
T V A DV +HG K G + V N L+ Y G + AL+L
Sbjct: 186 DHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGL-VEDVFVGNALVSFYGTHGFVTDALQL 244
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAV----ENFERMQKVVLKPNRVTFLSVLNAC 198
F DI ER NLVSW S+I F+ +G +E+ E E P+ T ++VL C
Sbjct: 245 F-DIMPER-NLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVC 302
Query: 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258
+ + G K + + ++ L+DM + G + A+ + + NVV
Sbjct: 303 AREREIGLG-KGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFK--MNNNKNVV 359
Query: 259 VWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299
W T++G S G+ V R++L D V + N
Sbjct: 360 SWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILN 400
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 71/189 (37%), Gaps = 49/189 (25%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ SK+F+ L E++ +WN MI G G + A LFEEM TG
Sbjct: 648 ITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEM------QRTG-------- 693
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNC-----QLIHGYGEKRGFN 116
P ++T L V A +G + Q+ +G K
Sbjct: 694 ------------------HNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLK 735
Query: 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF 176
+ C+ID + G + AL++ + E ++ W S++S +H +N
Sbjct: 736 HY-----ACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIH-------QNL 783
Query: 177 ERMQKVVLK 185
E +KV K
Sbjct: 784 EMGEKVAAK 792
>sp|Q9MA95|PP214_ARATH Putative pentatricopeptide repeat-containing protein At3g05240
OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2
Length = 565
Score = 206 bits (524), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/317 (38%), Positives = 178/317 (56%), Gaps = 6/317 (1%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
N++ +I K G+L AR LF+ MP R +VSW II GY++ + AL +F M+
Sbjct: 250 NVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDML 309
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135
P ++T L+V A G + Q IH Y K GF + L++ YAK G
Sbjct: 310 DLG-IAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGF-VKDAAIVCALVNMYAKTGD 367
Query: 136 IFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ-KVVLKPNRVTFLSV 194
SA K FED+ E+K+ ++WT +I G A HG G EA+ F+RMQ K P+ +T+L V
Sbjct: 368 AESAKKAFEDL--EKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGV 425
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
L ACSH GLVEEG ++F +M + + P ++HYGC++D+L RAGR E+AE++ +P +
Sbjct: 426 LYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVK- 484
Query: 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLR 314
NV +W LL C H N+E+ +R+ + E E G YVL+ NI A R+ D + +R
Sbjct: 485 PNVNIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAGRWADVKLIR 544
Query: 315 RVVDERNALKFPGRSLV 331
+ + K G S V
Sbjct: 545 ESMKSKRVDKVLGHSSV 561
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 128/249 (51%), Gaps = 13/249 (5%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90
GE+ Y +FE++P NVV+W +I G+ NR + A+ FR M + + +E ++ +
Sbjct: 156 GEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQS-NGVKANETIMVDL 214
Query: 91 FPAIWQNGDVRNCQLIHGYGEKRGFN-------AFHIHVSNCLIDTYAKCGCIFSALKLF 143
A + D+ + HG+ + GF+ F++ ++ LID YAKCG + +A LF
Sbjct: 215 LVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLF 274
Query: 144 EDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGL 203
+ + + LVSW SII+G++ +G +EA+ F M + + P++VTFLSV+ A G
Sbjct: 275 D--GMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDKVTFLSVIRASMIQGC 332
Query: 204 VEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTL 263
+ G + V + + D L++M + G E A+K + E + + W +
Sbjct: 333 SQLG-QSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAFEDL--EKKDTIAWTVV 389
Query: 264 LGACSFHGN 272
+ + HG+
Sbjct: 390 IIGLASHGH 398
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 123/250 (49%), Gaps = 15/250 (6%)
Query: 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92
L YARS+FE + C +V W +I GY+ + AL ++ M+ Y+ P T V
Sbjct: 57 LSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYS-PDYFTFPYVLK 115
Query: 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152
A D++ +HG+ K GF +++VS CL+ Y CG + L++FEDI + N
Sbjct: 116 ACSGLRDIQFGSCVHGFVVKTGFEV-NMYVSTCLLHMYMCCGEVNYGLRVFEDIP--QWN 172
Query: 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212
+V+W S+ISGF + +A+E F MQ +K N + +L AC + G K+F
Sbjct: 173 VVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTG-KWFH 231
Query: 213 KMVE--------ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLL 264
++ + +V ++ LIDM + G L A + G+P +V W +++
Sbjct: 232 GFLQGLGFDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPER--TLVSWNSII 289
Query: 265 GACSFHGNVE 274
S +G+ E
Sbjct: 290 TGYSQNGDAE 299
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 77/189 (40%), Gaps = 40/189 (21%)
Query: 3 KDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62
+ K F++L +++ + W V+I GL G
Sbjct: 369 ESAKKAFEDLEKKDTIAWTVVIIGLASHG------------------------------- 397
Query: 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV 122
N AL++F+RM P IT L V A G V Q + E R + V
Sbjct: 398 HGNEALSIFQRMQEKGNATPDGITYLGVLYACSHIGLVEEGQ--RYFAEMRDLHGLEPTV 455
Query: 123 SN--CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
+ C++D ++ G A +L + + V + N+ W ++++G +H E +E +R++
Sbjct: 456 EHYGCMVDILSRAGRFEEAERLVKTMPV-KPNVNIWGALLNGCDIH----ENLELTDRIR 510
Query: 181 KVVLKPNRV 189
+V +P +
Sbjct: 511 SMVAEPEEL 519
>sp|P0C8Q8|PP394_ARATH Pentatricopeptide repeat-containing protein At5g19020,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E42 PE=2
SV=1
Length = 685
Score = 206 bits (523), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 109/316 (34%), Positives = 183/316 (57%), Gaps = 7/316 (2%)
Query: 9 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGAL 68
F+ + ++ + N +I G VK G +E AR +F++ +++ SW +I GY + AL
Sbjct: 363 FEASVKDHIASRNALIAGFVKNGMVEQAREVFDQTHDKDIFSWNAMISGYAQSLSPQLAL 422
Query: 69 ALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF--HIHVSNCL 126
LFR M++ +P IT+++VF AI G + + H Y F+ + +++ +
Sbjct: 423 HLFREMISSSQVKPDAITMVSVFSAISSLGSLEEGKRAHDY---LNFSTIPPNDNLTAAI 479
Query: 127 IDTYAKCGCIFSALKLFEDI-SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
ID YAKCG I +AL +F ++ + W +II G A HG K A++ + +Q + +K
Sbjct: 480 IDMYAKCGSIETALNIFHQTKNISSSTISPWNAIICGSATHGHAKLALDLYSDLQSLPIK 539
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
PN +TF+ VL+AC H GLVE G +F+ M + + PDIKHYGC++D+LG+AGRLE+A++
Sbjct: 540 PNSITFVGVLSACCHAGLVELGKTYFESMKSDHGIEPDIKHYGCMVDLLGKAGRLEEAKE 599
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305
+ +P + +V++W LL A HGNVE+ E ++ ++ +GG V++ N+ A
Sbjct: 600 MIKKMPVK-ADVMIWGMLLSASRTHGNVEIAELAATELAAIDPSHGGCKVMLSNVYADAG 658
Query: 306 RYGDAERLRRVVDERN 321
R+ D +R + R+
Sbjct: 659 RWEDVALVREEMRTRD 674
Score = 134 bits (337), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 152/310 (49%), Gaps = 42/310 (13%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
LKD KLFDE+PERNLVTWNVM+ G K G +E A LF+++ +++VSW +IDG R
Sbjct: 224 LKDARKLFDEMPERNLVTWNVMLNGYSKAGLIEQAEELFDQITEKDIVSWGTMIDGCLRK 283
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQN-GDVRNCQLIHGYGEKRGFNAF-- 118
N+ + AL + M+ C +PSE+ ++ + A ++ G + QL HG KRGF+ +
Sbjct: 284 NQLDEALVYYTEMLRCG-MKPSEVMMVDLLSASARSVGSSKGLQL-HGTIVKRGFDCYDF 341
Query: 119 ----------------------------HIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150
HI N LI + K G + A ++F+
Sbjct: 342 LQATIIHFYAVSNDIKLALQQFEASVKDHIASRNALIAGFVKNGMVEQAREVFD--QTHD 399
Query: 151 KNLVSWTSIISGFAMHGMGKEAVENFERM-QKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209
K++ SW ++ISG+A + A+ F M +KP+ +T +SV +A S G +EEG +
Sbjct: 400 KDIFSWNAMISGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVFSAISSLGSLEEGKR 459
Query: 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV---ASGIPSEITNVVVWRTLLGA 266
D + + P+ +IDM + G +E A + I S + + W ++
Sbjct: 460 AHDYL-NFSTIPPNDNLTAAIIDMYAKCGSIETALNIFHQTKNISS--STISPWNAIICG 516
Query: 267 CSFHGNVEMG 276
+ HG+ ++
Sbjct: 517 SATHGHAKLA 526
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 125/239 (52%), Gaps = 12/239 (5%)
Query: 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTR 60
L D +F + + + ++N+M+ G V+ L A LF+ MP R+ VS+T +I GY +
Sbjct: 91 LLADAESVFRDHAKLDSASFNIMVDGYVRSRRLWDALKLFDVMPERSCVSYTTLIKGYAQ 150
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
N+ + A+ LFR M +E+T+ V A G + +C+++ K +
Sbjct: 151 NNQWSEAMELFREMRNLGIM-LNEVTLATVISACSHLGGIWDCRMLQSLAIKLKLEG-RV 208
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
VS L+ Y C C+ A KLF+++ +NLV+W +++G++ G+ ++A E F++
Sbjct: 209 FVSTNLLHMYCLCLCLKDARKLFDEM--PERNLVTWNVMLNGYSKAGLIEQAEELFDQ-- 264
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239
+ + + V++ ++++ C ++E L ++ +M+ C + P ++D+L + R
Sbjct: 265 --ITEKDIVSWGTMIDGCLRKNQLDEALVYYTEML-RCGMKPS---EVMMVDLLSASAR 317
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 15/169 (8%)
Query: 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183
N ++D Y + ++ ALKLF D+ ER + VS+T++I G+A + EA+E F M+ +
Sbjct: 111 NIMVDGYVRSRRLWDALKLF-DVMPER-SCVSYTTLIKGYAQNNQWSEAMELFREMRNLG 168
Query: 184 LKPNRVTFLSVLNACSH-GGLVE----EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
+ N VT +V++ACSH GG+ + + L K+ V ++ H CL L
Sbjct: 169 IMLNEVTLATVISACSHLGGIWDCRMLQSLAIKLKLEGRVFVSTNLLHMYCLCLCL---- 224
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME 287
+ A K+ +P N+V W +L S G +E E + +I E +
Sbjct: 225 --KDARKLFDEMPER--NLVTWNVMLNGYSKAGLIEQAEELFDQITEKD 269
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 205 bits (521), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 15/338 (4%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+K+ +FD +P RN++ MI+G + AR +F +M RNVVSW +I GYT+
Sbjct: 305 IKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQN 364
Query: 62 NRSNGALALF---RRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN-- 116
+ AL+LF +R C P+ + + A ++ H + K GF
Sbjct: 365 GENEEALSLFCLLKRESVC----PTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQ 420
Query: 117 ---AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAV 173
I V N LID Y KCGC+ +F + +ER + VSW ++I GFA +G G EA+
Sbjct: 421 SGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKM-MER-DCVSWNAMIIGFAQNGYGNEAL 478
Query: 174 ENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDM 233
E F M + KP+ +T + VL+AC H G VEEG +F M + V P HY C++D+
Sbjct: 479 ELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDL 538
Query: 234 LGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD 293
LGRAG LE+A+ + +P + + V+W +LL AC H N+ +G+ V K+LE+E G
Sbjct: 539 LGRAGFLEEAKSMIEEMPMQ-PDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGP 597
Query: 294 YVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
YVL+ N+ A + ++ D +R+ + + K PG S +
Sbjct: 598 YVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWI 635
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 155/284 (54%), Gaps = 6/284 (2%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L+DG ++FD++P+RN+ TWN ++TGL K G L+ A SLF MP R+ +W ++ G+ +
Sbjct: 71 LEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQH 130
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
+R AL F M+ E +E + +V A D+ +H K F + ++
Sbjct: 131 DRCEEALCYF-AMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLS-DVY 188
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+ + L+D Y+KCG + A ++F+++ +N+VSW S+I+ F +G EA++ F+ M +
Sbjct: 189 IGSALVDMYSKCGNVNDAQRVFDEMG--DRNVVSWNSLITCFEQNGPAVEALDVFQMMLE 246
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++P+ VT SV++AC+ ++ G + ++V+ ++ DI +DM + R++
Sbjct: 247 SRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIK 306
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
+A + +P I NV+ +++ + + + + K+ E
Sbjct: 307 EARFIFDSMP--IRNVIAETSMISGYAMAASTKAARLMFTKMAE 348
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 33/188 (17%)
Query: 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI------------------- 146
+H K GF+ I + N LID Y+KCG + ++F+ +
Sbjct: 42 VHASVIKSGFSN-EIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLG 100
Query: 147 ----------SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLN 196
S+ ++ +W S++SGFA H +EA+ F M K N +F SVL+
Sbjct: 101 FLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLS 160
Query: 197 ACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256
ACS + +G++ ++ + L D+ L+DM + G + A++V + N
Sbjct: 161 ACSGLNDMNKGVQVH-SLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDR--N 217
Query: 257 VVVWRTLL 264
VV W +L+
Sbjct: 218 VVSWNSLI 225
>sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g39350
OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1
Length = 677
Score = 204 bits (520), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 114/283 (40%), Positives = 165/283 (58%), Gaps = 5/283 (1%)
Query: 51 WTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYG 110
W+ II G + + AL LF+RM E EP+ T+ ++ PA D+R IH Y
Sbjct: 388 WSAIIAGCVQNELVSDALGLFKRMRR-EDVEPNIATLNSLLPAYAALADLRQAMNIHCYL 446
Query: 111 EKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK--NLVSWTSIISGFAMHGM 168
K GF + + + L+ Y+KCG + SA K+F I + K ++V W ++ISG+ MHG
Sbjct: 447 TKTGFMS-SLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGD 505
Query: 169 GKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG 228
G A++ F M + + PN +TF S LNACSH GLVEEGL F M+E + L HY
Sbjct: 506 GHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYT 565
Query: 229 CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
C++D+LGRAGRL++A + + IP E T+ VW LL AC H NV++GE K+ E+E
Sbjct: 566 CIVDLLGRAGRLDEAYNLITTIPFEPTS-TVWGALLAACVTHENVQLGEMAANKLFELEP 624
Query: 289 GYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
G+YVL+ NI A + R+ D E++R +++ K PG S +
Sbjct: 625 ENTGNYVLLANIYAALGRWKDMEKVRSMMENVGLRKKPGHSTI 667
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 124/253 (49%), Gaps = 7/253 (2%)
Query: 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74
R+ N ++ + +G++E AR +F+ M R+V+SW +I GY R N AL +F M
Sbjct: 150 RDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWM 209
Query: 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
V E + TI+++ P D+ + +H E++ I V N L++ Y KCG
Sbjct: 210 VN-ESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGD-KIEVKNALVNMYLKCG 267
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194
+ A +F+ +ER+++++WT +I+G+ G + A+E MQ ++PN VT S+
Sbjct: 268 RMDEARFVFD--RMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASL 325
Query: 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254
++ C V +G V + +V DI LI M + R++ +V SG
Sbjct: 326 VSVCGDALKVNDGKCLHGWAVRQ-QVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYH 384
Query: 255 TNVVVWRTLLGAC 267
T W ++ C
Sbjct: 385 TG--PWSAIIAGC 395
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 124/248 (50%), Gaps = 13/248 (5%)
Query: 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVA----CEYTEPSEIT 86
G + YAR LFEEMP +++S+ +I Y R + A+++F RMV+ C P T
Sbjct: 63 GHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKC---VPDGYT 119
Query: 87 ILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI 146
V A + ++ ++HG + F +V N L+ Y G + A +F+
Sbjct: 120 YPFVAKAAGELKSMKLGLVVHGRILRSWFGR-DKYVQNALLAMYMNFGKVEMARDVFD-- 176
Query: 147 SVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEE 206
++ ++++SW ++ISG+ +G +A+ F+ M + + T +S+L C H +E
Sbjct: 177 VMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEM 236
Query: 207 GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266
G + K+VEE + I+ L++M + GR+++A V + E +V+ W ++
Sbjct: 237 G-RNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRM--ERRDVITWTCMING 293
Query: 267 CSFHGNVE 274
+ G+VE
Sbjct: 294 YTEDGDVE 301
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 10/150 (6%)
Query: 25 TGLV----KWGELEYARSLF----EEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVA 76
TGLV K G LE A +F E+ ++VV W +I GY + AL +F MV
Sbjct: 459 TGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVR 518
Query: 77 CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136
T P+EIT + A +G V + + + + C++D + G +
Sbjct: 519 SGVT-PNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGRAGRL 577
Query: 137 FSALKLFEDISVERKNLVSWTSIISGFAMH 166
A L I E + V W ++++ H
Sbjct: 578 DEAYNLITTIPFEPTSTV-WGALLAACVTH 606
Score = 38.1 bits (87), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 7/147 (4%)
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM- 179
H+ + L TYA CG I A KLFE++ + +L+S+ +I + G+ +A+ F RM
Sbjct: 50 HILSTLSVTYALCGHITYARKLFEEMP--QSSLLSYNIVIRMYVREGLYHDAISVFIRMV 107
Query: 180 -QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238
+ V P+ T+ V A ++ GL +++ D L+ M G
Sbjct: 108 SEGVKCVPDGYTYPFVAKAAGELKSMKLGLVVHGRILRSW-FGRDKYVQNALLAMYMNFG 166
Query: 239 RLEQAEKVASGIPSEITNVVVWRTLLG 265
++E A V + + +V+ W T++
Sbjct: 167 KVEMARDVFDVMKNR--DVISWNTMIS 191
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 204 bits (519), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 114/309 (36%), Positives = 182/309 (58%), Gaps = 5/309 (1%)
Query: 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82
++ K +E + +F + CR+ +SW ++ GY + R N AL LFR+MV + +P
Sbjct: 283 LVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAK-VKP 341
Query: 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142
+ +V PA + + +HGY + GF + +I +++ L+D Y+KCG I +A K+
Sbjct: 342 GAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGS-NIFIASALVDMYSKCGNIKAARKI 400
Query: 143 FEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202
F+ ++V + VSWT+II G A+HG G EAV FE M++ +KPN+V F++VL ACSH G
Sbjct: 401 FDRMNVLDE--VSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVG 458
Query: 203 LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262
LV+E +F+ M + + +++HY + D+LGRAG+LE+A S + E T VW T
Sbjct: 459 LVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTG-SVWST 517
Query: 263 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNA 322
LL +CS H N+E+ E+V KI ++ G YVLM N+ A R+ + +LR + ++
Sbjct: 518 LLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGL 577
Query: 323 LKFPGRSLV 331
K P S +
Sbjct: 578 RKKPACSWI 586
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 141/284 (49%), Gaps = 14/284 (4%)
Query: 8 LFDELPERNLVTWNVMI---TGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS 64
+FDE+P+R + + + T ++ +G ++ R +FE MP ++VVS+ II GY +
Sbjct: 165 VFDEMPQRTSNSGDEDVKAETCIMPFG-IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMY 223
Query: 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN 124
AL + R M + +P T+ +V P + DV + IHGY ++G ++ +++ +
Sbjct: 224 EDALRMVREMGTTDL-KPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDS-DVYIGS 281
Query: 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184
L+D YAK I + ++F + ++ +SW S+++G+ +G EA+ F +M +
Sbjct: 282 SLVDMYAKSARIEDSERVFSRLYC--RDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKV 339
Query: 185 KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 244
KP V F SV+ AC+H + G K V +I L+DM + G ++ A
Sbjct: 340 KPGAVAFSSVIPACAHLATLHLG-KQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAAR 398
Query: 245 KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288
K+ + + + V W ++ + HG+ G EM+R
Sbjct: 399 KIFDRM--NVLDEVSWTAIIMGHALHGH---GHEAVSLFEEMKR 437
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 120/279 (43%), Gaps = 39/279 (13%)
Query: 40 FEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGD 99
F+ + V++W +I +T + + ALA F M A P +V + D
Sbjct: 62 FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRC-PDHNVFPSVLKSCTMMMD 120
Query: 100 VRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC---GCIFSALKLF------------E 144
+R + +HG+ + G + ++ N L++ YAK G S +F E
Sbjct: 121 LRFGESVHGFIVRLGMDC-DLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDE 179
Query: 145 DISVE-------------------RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
D+ E RK++VS+ +II+G+A GM ++A+ M LK
Sbjct: 180 DVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLK 239
Query: 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245
P+ T SVL S V +G + ++ + + D+ L+DM ++ R+E +E+
Sbjct: 240 PDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRK-GIDSDVYIGSSLVDMYAKSARIEDSER 298
Query: 246 VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKIL 284
V S + + + W +L+ +G R+ R+++
Sbjct: 299 VFSRLYCR--DGISWNSLVAGYVQNGRYNEALRLFRQMV 335
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 11/171 (6%)
Query: 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75
N+ + ++ K G ++ AR +F+ M + VSWT II G+ + A++LF M
Sbjct: 377 NIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMK 436
Query: 76 ACEYTEPSEITILAVFPAIWQNGDVRNC-QLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134
+ +P+++ +AV A G V + + G N H + + D + G
Sbjct: 437 R-QGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYA-AVADLLGRAG 494
Query: 135 CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185
+ A + VE V W++++S ++H +N E +KV K
Sbjct: 495 KLEEAYNFISKMCVEPTGSV-WSTLLSSCSVH-------KNLELAEKVAEK 537
>sp|Q9LXE8|PP386_ARATH Pentatricopeptide repeat-containing protein At5g15340,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2
SV=1
Length = 623
Score = 204 bits (518), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 119/331 (35%), Positives = 194/331 (58%), Gaps = 11/331 (3%)
Query: 7 KLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNG 66
++F+EL E+++V+W V++ +VKW LE R +F EMP RN V+WT ++ GY +
Sbjct: 167 RIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTRE 226
Query: 67 ALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR----GFNAFH--I 120
L L MV + +T+ ++ A Q+G++ + +H Y K+ G A + +
Sbjct: 227 VLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDV 286
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
V L+D YAKCG I S++ +F + ++N+V+W ++ SG AMHG G+ ++ F +M
Sbjct: 287 MVGTALVDMYAKCGNIDSSMNVFR--LMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMI 344
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
+ V KP+ +TF +VL+ACSH G+V+EG + F + + P + HY C++D+LGRAG +
Sbjct: 345 REV-KPDDLTFTAVLSACSHSGIVDEGWRCFHSL-RFYGLEPKVDHYACMVDLLGRAGLI 402
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+AE + +P N VV +LLG+CS HG VE+ ER+ R++++M G +LM N+
Sbjct: 403 EEAEILMREMPVP-PNEVVLGSLLGSCSVHGKVEIAERIKRELIQMSPGNTEYQILMSNM 461
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
R A+ LR + +R K PG S +
Sbjct: 462 YVAEGRSDIADGLRGSLRKRGIRKIPGLSSI 492
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 131/320 (40%), Gaps = 50/320 (15%)
Query: 1 FLKDGSKLFDELPERNL------VTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWT 52
FL+ G +L L L N + GE+ A+ LF+E+P ++ V WT
Sbjct: 21 FLRPGKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEIPLSEKDNVDWT 80
Query: 53 GIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEK 112
++ ++R ++ LF M + E +++++ +F + D+ Q HG K
Sbjct: 81 TLLSSFSRYGLLVNSMKLFVEMRR-KRVEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVK 139
Query: 113 RGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS-------------------VER--- 150
G + V N L+D Y KCG + ++FE++ +ER
Sbjct: 140 MGVLT-SVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGRE 198
Query: 151 -------KNLVSWTSIISGFAMHGMGKEAVENFERMQ-KVVLKPNRVTFLSVLNACSHGG 202
+N V+WT +++G+ G +E +E M + N VT S+L+AC+ G
Sbjct: 199 VFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSG 258
Query: 203 LVEEG-------LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255
+ G LK M EE D+ L+DM + G ++ + V +
Sbjct: 259 NLVVGRWVHVYALKKEMMMGEEAS-YDDVMVGTALVDMYAKCGNIDSSMNVFRLMRKR-- 315
Query: 256 NVVVWRTLLGACSFHGNVEM 275
NVV W L + HG M
Sbjct: 316 NVVTWNALFSGLAMHGKGRM 335
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 85/168 (50%), Gaps = 9/168 (5%)
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
++SN L YA G + +A KLF++I + K+ V WT+++S F+ +G+ +++ F M+
Sbjct: 44 YLSNALFQFYASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMR 103
Query: 181 KVVLKPNRVTFLSVLNACSH---GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237
+ ++ + V+ + + C+ G ++G KM VL +K L+DM G+
Sbjct: 104 RKRVEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKM----GVLTSVKVCNALMDMYGKC 159
Query: 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
G + + +++ + E +VV W +L +E G V ++ E
Sbjct: 160 GLVSEVKRIFEEL--EEKSVVSWTVVLDTVVKWEGLERGREVFHEMPE 205
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 203 bits (517), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 187/330 (56%), Gaps = 5/330 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
L K+F+ +P + V M+T + G++ +AR LFE MP R+ ++W +I GY ++
Sbjct: 159 LDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQV 218
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
S AL +F M E + + + +++V A Q G + + H Y E+ +
Sbjct: 219 GESREALNVFHLM-QLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIK-ITVR 276
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
++ L+D YAKCG + A+++F +E KN+ +W+S ++G AM+G G++ +E F M++
Sbjct: 277 LATTLVDLYAKCGDMEKAMEVF--WGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQ 334
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
+ PN VTF+SVL CS G V+EG + FD M E + P ++HYGCL+D+ RAGRLE
Sbjct: 335 DGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLE 394
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301
A + +P + + VW +LL A + N+E+G ++K+LE+E G YVL+ NI
Sbjct: 395 DAVSIIQQMPMK-PHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIY 453
Query: 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A + + +R+ + + K PG S++
Sbjct: 454 ADSNDWDNVSHVRQSMKSKGVRKQPGCSVM 483
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 124/290 (42%), Gaps = 34/290 (11%)
Query: 12 LPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALF 71
L + +LV V L L+YA + + + + +I + + + +
Sbjct: 35 LKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFY 94
Query: 72 RRMVAC-EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTY 130
RR+++ +P T+ + A +HG +RGF+ HV LI Y
Sbjct: 95 RRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDN-DPHVQTGLISLY 153
Query: 131 AKCGCIFSALKLFEDIS-----------------------------VERKNLVSWTSIIS 161
A+ GC+ S K+F I + ++ ++W ++IS
Sbjct: 154 AELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMIS 213
Query: 162 GFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVL 221
G+A G +EA+ F MQ +K N V +SVL+AC+ G +++G ++ +E ++
Sbjct: 214 GYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQG-RWAHSYIERNKIK 272
Query: 222 PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG 271
++ L+D+ + G +E+A +V G+ E NV W + L + +G
Sbjct: 273 ITVRLATTLVDLYAKCGDMEKAMEVFWGM--EEKNVYTWSSALNGLAMNG 320
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 203 bits (517), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/331 (35%), Positives = 183/331 (55%), Gaps = 6/331 (1%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC-RNVVSWTGIIDGYTR 60
L+ S F P R +V W MITG +K ++E A ++F++M +N+V+W +I GY
Sbjct: 202 LEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVE 261
Query: 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120
+R L LFR M+ E P+ + + + ++ + IH K +
Sbjct: 262 NSRPEDGLKLFRAMLE-EGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTL-CNDV 319
Query: 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180
LI Y KCG + A KLFE +++K++V+W ++ISG+A HG +A+ F M
Sbjct: 320 TALTSLISMYCKCGELGDAWKLFE--VMKKKDVVAWNAMISGYAQHGNADKALCLFREMI 377
Query: 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240
++P+ +TF++VL AC+H GLV G+ +F+ MV + +V P HY C++D+LGRAG+L
Sbjct: 378 DNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKL 437
Query: 241 EQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300
E+A K+ +P + V+ TLLGAC H NVE+ E K+L++ YV + NI
Sbjct: 438 EEALKLIRSMPFR-PHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANI 496
Query: 301 LAGVWRYGDAERLRRVVDERNALKFPGRSLV 331
A R+ D R+R+ + E N +K PG S +
Sbjct: 497 YASKNRWEDVARVRKRMKESNVVKVPGYSWI 527
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 137/284 (48%), Gaps = 14/284 (4%)
Query: 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRM 61
+ + +LFDE+PE + ++N+M++ V+ E A+S F+ MP ++ SW +I GY R
Sbjct: 109 MMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARR 168
Query: 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH 121
A LF M+ E +E++ A+ + GD+ RG A+
Sbjct: 169 GEMEKARELFYSMM-----EKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAW--- 220
Query: 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181
+I Y K + A +F+D++V KNLV+W ++ISG+ + ++ ++ F M +
Sbjct: 221 --TAMITGYMKAKKVELAEAMFKDMTVN-KNLVTWNAMISGYVENSRPEDGLKLFRAMLE 277
Query: 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241
++PN S L CS ++ G + ++V + + D+ LI M + G L
Sbjct: 278 EGIRPNSSGLSSALLGCSELSALQLGRQ-IHQIVSKSTLCNDVTALTSLISMYCKCGELG 336
Query: 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285
A K+ + + +VV W ++ + HGN + + R++++
Sbjct: 337 DAWKLFEVMKKK--DVVAWNAMISGYAQHGNADKALCLFREMID 378
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,200,414
Number of Sequences: 539616
Number of extensions: 5253844
Number of successful extensions: 15626
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 9975
Number of HSP's gapped (non-prelim): 2139
length of query: 331
length of database: 191,569,459
effective HSP length: 118
effective length of query: 213
effective length of database: 127,894,771
effective search space: 27241586223
effective search space used: 27241586223
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)