Query 048799
Match_columns 331
No_of_seqs 505 out of 1411
Neff 11.8
Searched_HMMs 46136
Date Fri Mar 29 13:22:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048799.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048799hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 2.9E-56 6.3E-61 399.0 32.3 312 15-331 257-568 (697)
2 PLN03218 maturation of RBCL 1; 100.0 3.9E-53 8.5E-58 382.6 34.9 321 2-326 453-789 (1060)
3 PLN03218 maturation of RBCL 1; 100.0 8.1E-53 1.8E-57 380.6 35.5 321 2-326 422-754 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 5.4E-53 1.2E-57 386.3 34.4 326 3-331 305-731 (857)
5 PLN03081 pentatricopeptide (PP 100.0 1.7E-50 3.7E-55 361.9 31.4 317 2-326 139-462 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 8.1E-48 1.7E-52 352.3 31.3 304 15-325 220-523 (857)
7 PRK11788 tetratricopeptide rep 100.0 1.6E-25 3.5E-30 189.0 31.8 299 23-327 41-354 (389)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.3E-25 5E-30 207.6 34.0 311 2-321 549-867 (899)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 8E-25 1.7E-29 204.0 34.1 308 3-318 584-898 (899)
10 PRK11788 tetratricopeptide rep 99.9 7.2E-24 1.6E-28 179.0 30.9 280 1-285 50-346 (389)
11 KOG4626 O-linked N-acetylgluco 99.9 1.3E-23 2.8E-28 172.7 20.4 311 2-322 132-487 (966)
12 PRK15174 Vi polysaccharide exp 99.9 1.1E-21 2.3E-26 173.9 33.7 314 1-322 57-383 (656)
13 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-21 2.7E-26 173.8 33.5 315 1-320 142-571 (615)
14 PRK15174 Vi polysaccharide exp 99.9 1.7E-21 3.7E-26 172.7 31.1 295 20-321 45-348 (656)
15 KOG4626 O-linked N-acetylgluco 99.9 2.8E-21 6.1E-26 159.1 24.2 299 2-310 200-509 (966)
16 PRK11447 cellulose synthase su 99.9 5.5E-20 1.2E-24 173.5 31.6 314 2-320 285-700 (1157)
17 TIGR00990 3a0801s09 mitochondr 99.9 3.2E-19 6.9E-24 158.5 34.5 298 19-322 129-498 (615)
18 PRK11447 cellulose synthase su 99.9 4.9E-19 1.1E-23 167.2 31.2 308 2-319 367-739 (1157)
19 PRK10049 pgaA outer membrane p 99.9 2.6E-18 5.6E-23 155.6 32.3 313 2-320 31-422 (765)
20 PRK10049 pgaA outer membrane p 99.9 6.6E-18 1.4E-22 153.0 33.5 318 1-321 64-457 (765)
21 PF13429 TPR_15: Tetratricopep 99.8 7.4E-21 1.6E-25 152.8 9.3 261 53-319 13-276 (280)
22 PRK09782 bacteriophage N4 rece 99.8 1.9E-16 4.2E-21 144.3 34.9 298 16-321 375-707 (987)
23 PRK09782 bacteriophage N4 rece 99.8 3.6E-16 7.9E-21 142.6 33.4 265 47-322 476-742 (987)
24 KOG2076 RNA polymerase III tra 99.8 1.3E-16 2.8E-21 137.0 27.5 324 2-330 155-522 (895)
25 KOG1126 DNA-binding cell divis 99.8 4.1E-17 9E-22 135.9 22.3 284 30-323 332-623 (638)
26 PRK10747 putative protoheme IX 99.8 1.2E-15 2.6E-20 128.2 29.1 279 29-319 96-389 (398)
27 PRK14574 hmsH outer membrane p 99.8 2.6E-15 5.6E-20 134.4 31.7 314 2-320 84-479 (822)
28 COG2956 Predicted N-acetylgluc 99.8 3.3E-15 7.2E-20 114.4 26.3 279 2-285 51-346 (389)
29 PRK10747 putative protoheme IX 99.8 9.9E-15 2.1E-19 122.7 31.3 279 1-287 99-391 (398)
30 PF13429 TPR_15: Tetratricopep 99.8 9.4E-18 2E-22 134.8 11.8 254 22-285 13-276 (280)
31 KOG1126 DNA-binding cell divis 99.8 2.7E-16 5.9E-21 131.1 20.0 276 3-290 336-624 (638)
32 TIGR00540 hemY_coli hemY prote 99.7 1.1E-14 2.4E-19 122.9 29.9 283 28-319 95-398 (409)
33 PRK14574 hmsH outer membrane p 99.7 5E-14 1.1E-18 126.3 33.6 319 1-321 117-514 (822)
34 TIGR00540 hemY_coli hemY prote 99.7 1.7E-14 3.8E-19 121.8 28.7 90 92-182 126-216 (409)
35 COG2956 Predicted N-acetylgluc 99.7 2.6E-14 5.6E-19 109.6 25.1 302 20-328 39-355 (389)
36 KOG0547 Translocase of outer m 99.7 1.1E-14 2.4E-19 117.4 23.0 215 97-318 339-564 (606)
37 KOG1155 Anaphase-promoting com 99.7 9.2E-14 2E-18 111.5 27.4 164 153-320 330-495 (559)
38 TIGR02521 type_IV_pilW type IV 99.7 5.3E-14 1.2E-18 110.2 22.7 200 119-319 30-231 (234)
39 PRK12370 invasion protein regu 99.7 1.4E-13 3E-18 120.7 26.3 263 47-321 255-536 (553)
40 COG3071 HemY Uncharacterized e 99.7 1.1E-12 2.3E-17 103.7 27.8 286 30-325 97-395 (400)
41 KOG1915 Cell cycle control pro 99.7 7.7E-13 1.7E-17 106.8 27.0 322 2-326 157-506 (677)
42 KOG1155 Anaphase-promoting com 99.7 3.1E-13 6.6E-18 108.6 24.6 252 61-317 240-533 (559)
43 KOG1840 Kinesin light chain [C 99.6 1.6E-13 3.5E-18 115.4 23.9 236 84-319 199-478 (508)
44 KOG2002 TPR-containing nuclear 99.6 4.5E-13 9.8E-18 116.6 27.1 301 15-321 268-594 (1018)
45 COG3071 HemY Uncharacterized e 99.6 2.7E-12 5.8E-17 101.5 28.9 277 1-285 99-389 (400)
46 KOG4422 Uncharacterized conser 99.6 5.4E-13 1.2E-17 106.4 24.9 306 8-320 198-551 (625)
47 KOG2002 TPR-containing nuclear 99.6 4E-13 8.7E-18 116.9 26.1 240 82-322 450-711 (1018)
48 TIGR02521 type_IV_pilW type IV 99.6 3.3E-13 7.1E-18 105.7 23.9 196 86-285 33-231 (234)
49 PRK11189 lipoprotein NlpI; Pro 99.6 8.5E-13 1.8E-17 106.4 25.5 234 61-303 39-283 (296)
50 KOG1129 TPR repeat-containing 99.6 2.6E-14 5.7E-19 109.8 15.6 234 52-292 227-464 (478)
51 KOG0495 HAT repeat protein [RN 99.6 2.2E-12 4.8E-17 108.0 26.9 300 18-330 585-888 (913)
52 KOG2003 TPR repeat-containing 99.6 5.3E-13 1.1E-17 107.3 22.5 274 26-306 428-709 (840)
53 KOG1173 Anaphase-promoting com 99.6 5E-13 1.1E-17 109.9 22.7 263 49-319 245-517 (611)
54 PRK12370 invasion protein regu 99.6 6.5E-13 1.4E-17 116.5 22.6 230 82-319 254-501 (553)
55 KOG2076 RNA polymerase III tra 99.6 1E-11 2.2E-16 107.6 28.1 301 17-322 139-480 (895)
56 KOG1129 TPR repeat-containing 99.6 1.9E-13 4.2E-18 105.2 15.3 228 88-321 227-459 (478)
57 KOG0495 HAT repeat protein [RN 99.6 3.2E-11 7E-16 101.3 28.7 293 16-316 478-778 (913)
58 KOG1840 Kinesin light chain [C 99.5 5.5E-12 1.2E-16 106.3 22.0 237 49-285 200-478 (508)
59 KOG0547 Translocase of outer m 99.5 2.7E-11 5.9E-16 98.3 24.7 296 20-321 118-492 (606)
60 KOG1173 Anaphase-promoting com 99.5 2.6E-11 5.7E-16 100.0 24.9 282 16-302 243-534 (611)
61 PRK11189 lipoprotein NlpI; Pro 99.5 8.7E-12 1.9E-16 100.6 20.1 217 97-322 39-267 (296)
62 COG3063 PilF Tfp pilus assembl 99.5 4.1E-11 8.8E-16 88.1 21.4 201 86-290 37-240 (250)
63 KOG4422 Uncharacterized conser 99.5 3.4E-11 7.4E-16 96.3 22.6 243 39-287 198-463 (625)
64 KOG2003 TPR repeat-containing 99.5 3E-11 6.6E-16 97.4 22.5 187 131-320 501-689 (840)
65 PF12569 NARP1: NMDA receptor- 99.5 4.5E-11 9.7E-16 102.0 24.1 260 56-322 12-293 (517)
66 PF13041 PPR_2: PPR repeat fam 99.5 1.7E-13 3.6E-18 78.5 6.5 50 151-200 1-50 (50)
67 KOG1125 TPR repeat-containing 99.5 3.6E-12 7.9E-17 105.3 16.6 221 92-319 293-526 (579)
68 KOG1915 Cell cycle control pro 99.5 2.4E-10 5.1E-15 92.7 26.2 311 4-321 125-467 (677)
69 KOG1174 Anaphase-promoting com 99.4 2.5E-10 5.5E-15 91.0 24.2 273 15-295 230-509 (564)
70 COG3063 PilF Tfp pilus assembl 99.4 2.5E-10 5.4E-15 84.1 21.5 206 50-262 37-245 (250)
71 PF04733 Coatomer_E: Coatomer 99.4 1.3E-10 2.9E-15 92.5 20.5 249 27-290 11-269 (290)
72 PF12569 NARP1: NMDA receptor- 99.4 1.7E-09 3.6E-14 92.5 27.7 288 23-319 10-333 (517)
73 KOG4162 Predicted calmodulin-b 99.4 3E-09 6.6E-14 91.2 28.9 303 15-321 321-784 (799)
74 PF13041 PPR_2: PPR repeat fam 99.4 1.3E-12 2.9E-17 74.7 6.0 50 186-236 1-50 (50)
75 KOG1174 Anaphase-promoting com 99.4 2.2E-09 4.7E-14 85.8 25.3 297 16-322 193-502 (564)
76 KOG0624 dsRNA-activated protei 99.4 4.8E-09 1E-13 81.9 25.4 299 16-321 37-371 (504)
77 cd05804 StaR_like StaR_like; a 99.4 1.7E-08 3.6E-13 84.5 31.0 300 17-321 6-337 (355)
78 KOG0548 Molecular co-chaperone 99.3 2.6E-09 5.6E-14 88.1 21.9 318 1-321 17-456 (539)
79 KOG4340 Uncharacterized conser 99.3 4.6E-09 1E-13 80.5 21.1 288 20-316 13-335 (459)
80 KOG1070 rRNA processing protei 99.3 8.2E-10 1.8E-14 100.2 19.8 202 119-324 1457-1667(1710)
81 PF04733 Coatomer_E: Coatomer 99.3 2.1E-09 4.6E-14 85.7 20.3 231 16-256 34-268 (290)
82 KOG1125 TPR repeat-containing 99.2 1.7E-09 3.6E-14 89.9 18.6 250 56-313 293-564 (579)
83 KOG4318 Bicoid mRNA stability 99.2 5E-09 1.1E-13 91.3 22.1 216 14-239 22-286 (1088)
84 KOG1128 Uncharacterized conser 99.2 1.9E-09 4.1E-14 91.9 16.8 222 82-322 396-618 (777)
85 cd05804 StaR_like StaR_like; a 99.2 1.6E-07 3.5E-12 78.6 28.5 269 48-321 6-294 (355)
86 KOG0624 dsRNA-activated protei 99.2 5.7E-08 1.2E-12 76.1 22.8 284 2-292 54-376 (504)
87 KOG1156 N-terminal acetyltrans 99.1 1.9E-07 4.1E-12 79.0 26.3 299 15-322 73-470 (700)
88 PLN02789 farnesyltranstransfer 99.1 2.8E-08 6E-13 80.4 20.5 122 57-182 46-171 (320)
89 TIGR03302 OM_YfiO outer membra 99.1 6.9E-09 1.5E-13 81.4 16.5 184 119-321 32-233 (235)
90 KOG0548 Molecular co-chaperone 99.1 1E-07 2.2E-12 78.9 23.3 223 87-314 227-483 (539)
91 TIGR03302 OM_YfiO outer membra 99.1 1.9E-08 4.1E-13 78.9 18.4 186 82-288 31-234 (235)
92 PLN02789 farnesyltranstransfer 99.1 4.4E-07 9.6E-12 73.5 25.4 115 99-216 52-170 (320)
93 PRK04841 transcriptional regul 99.1 5.9E-07 1.3E-11 84.7 30.3 299 22-321 414-761 (903)
94 PRK15359 type III secretion sy 99.1 8E-09 1.7E-13 73.8 13.5 123 174-302 14-137 (144)
95 KOG2376 Signal recognition par 99.1 3.3E-07 7.1E-12 76.8 24.4 144 168-315 356-515 (652)
96 PRK10370 formate-dependent nit 99.1 2.1E-08 4.6E-13 75.7 16.4 154 127-293 23-180 (198)
97 KOG1070 rRNA processing protei 99.1 1.5E-07 3.3E-12 86.0 23.7 231 82-315 1456-1695(1710)
98 COG5010 TadD Flp pilus assembl 99.0 4.7E-08 1E-12 73.8 16.9 162 119-284 66-229 (257)
99 PRK14720 transcript cleavage f 99.0 4.9E-07 1.1E-11 81.6 25.7 237 14-302 28-268 (906)
100 KOG4318 Bicoid mRNA stability 99.0 2.4E-08 5.3E-13 87.2 16.9 86 238-327 186-272 (1088)
101 KOG2047 mRNA splicing factor [ 99.0 4.8E-07 1E-11 76.7 23.8 129 20-149 141-277 (835)
102 KOG2047 mRNA splicing factor [ 99.0 1.5E-06 3.3E-11 73.8 25.7 289 18-312 388-715 (835)
103 COG5010 TadD Flp pilus assembl 99.0 7.2E-07 1.6E-11 67.5 21.5 160 88-253 70-231 (257)
104 KOG3785 Uncharacterized conser 99.0 1.7E-06 3.8E-11 68.4 24.2 52 23-74 63-117 (557)
105 PRK15359 type III secretion sy 99.0 9.2E-09 2E-13 73.5 11.1 109 208-321 13-122 (144)
106 KOG2376 Signal recognition par 99.0 4.2E-06 9.1E-11 70.5 27.5 97 225-321 377-488 (652)
107 KOG3785 Uncharacterized conser 99.0 3.5E-07 7.6E-12 72.2 20.1 130 158-290 364-494 (557)
108 KOG3081 Vesicle coat complex C 99.0 6E-07 1.3E-11 68.0 20.5 247 29-290 20-275 (299)
109 KOG1128 Uncharacterized conser 99.0 1.2E-07 2.5E-12 81.4 18.8 186 119-321 397-583 (777)
110 PRK10370 formate-dependent nit 99.0 8.3E-08 1.8E-12 72.4 16.2 117 61-181 52-172 (198)
111 KOG3081 Vesicle coat complex C 99.0 1.3E-06 2.9E-11 66.2 22.1 246 56-319 16-270 (299)
112 KOG0985 Vesicle coat protein c 99.0 4.6E-07 9.9E-12 80.7 22.5 238 31-304 1089-1326(1666)
113 KOG1156 N-terminal acetyltrans 99.0 4.7E-07 1E-11 76.7 21.6 298 19-323 10-320 (700)
114 KOG1127 TPR repeat-containing 98.9 8E-08 1.7E-12 85.0 17.1 161 18-180 493-657 (1238)
115 PRK04841 transcriptional regul 98.9 4.1E-06 8.9E-11 79.1 29.9 294 26-320 383-720 (903)
116 PRK15179 Vi polysaccharide bio 98.9 3.2E-07 6.9E-12 81.8 20.4 134 151-288 84-219 (694)
117 KOG4162 Predicted calmodulin-b 98.9 6.2E-06 1.3E-10 71.6 25.7 255 33-292 460-789 (799)
118 PF12854 PPR_1: PPR repeat 98.9 2.6E-09 5.7E-14 54.9 3.5 32 219-250 2-33 (34)
119 KOG1914 mRNA cleavage and poly 98.9 2.7E-05 5.9E-10 65.1 27.5 118 204-323 347-467 (656)
120 PF12854 PPR_1: PPR repeat 98.8 6.5E-09 1.4E-13 53.5 4.3 34 182-215 1-34 (34)
121 KOG3617 WD40 and TPR repeat-co 98.8 2E-06 4.3E-11 75.2 21.3 206 16-251 756-994 (1416)
122 KOG3060 Uncharacterized conser 98.8 3.3E-06 7.2E-11 63.6 19.7 165 122-289 54-223 (289)
123 PRK15179 Vi polysaccharide bio 98.8 1.5E-06 3.3E-11 77.5 21.2 129 48-181 86-216 (694)
124 COG4783 Putative Zn-dependent 98.8 5E-06 1.1E-10 68.6 22.1 145 122-286 308-454 (484)
125 PRK14720 transcript cleavage f 98.8 4.6E-07 1E-11 81.8 17.5 207 82-323 29-255 (906)
126 KOG3616 Selective LIM binding 98.8 3.6E-06 7.7E-11 73.0 21.8 136 128-282 740-875 (1636)
127 COG4783 Putative Zn-dependent 98.8 1.9E-06 4.2E-11 70.9 18.3 126 189-317 308-434 (484)
128 KOG1127 TPR repeat-containing 98.8 1E-06 2.2E-11 78.3 17.5 307 3-316 509-909 (1238)
129 KOG3616 Selective LIM binding 98.7 1.1E-06 2.3E-11 76.1 16.3 193 58-283 716-908 (1636)
130 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 3.6E-07 7.9E-12 75.5 13.2 123 191-318 172-295 (395)
131 TIGR02552 LcrH_SycD type III s 98.7 1.4E-07 3.1E-12 67.0 9.6 114 175-292 5-120 (135)
132 TIGR02552 LcrH_SycD type III s 98.7 8.1E-07 1.8E-11 63.0 13.3 115 142-259 5-120 (135)
133 PF09976 TPR_21: Tetratricopep 98.7 1.4E-06 3E-11 62.5 14.4 117 61-178 24-143 (145)
134 PF09976 TPR_21: Tetratricopep 98.7 4E-06 8.7E-11 60.2 15.5 125 156-283 15-144 (145)
135 PRK15363 pathogenicity island 98.6 2.4E-07 5.1E-12 65.3 8.4 96 225-320 36-132 (157)
136 KOG4340 Uncharacterized conser 98.6 2.1E-06 4.5E-11 66.4 14.0 197 124-327 14-214 (459)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 1.9E-06 4.2E-11 71.3 14.6 123 51-180 172-295 (395)
138 KOG2053 Mitochondrial inherita 98.6 9.9E-05 2.1E-09 65.5 24.3 227 59-290 20-259 (932)
139 KOG3060 Uncharacterized conser 98.6 1.4E-05 3E-10 60.4 16.6 183 135-321 27-221 (289)
140 KOG0985 Vesicle coat protein c 98.6 0.00032 7E-09 63.4 27.4 142 152-315 1103-1244(1666)
141 KOG3617 WD40 and TPR repeat-co 98.5 1.9E-05 4.1E-10 69.4 18.4 242 16-285 725-995 (1416)
142 TIGR02795 tol_pal_ybgF tol-pal 98.5 4.7E-06 1E-10 57.6 11.7 101 191-291 5-110 (119)
143 TIGR02795 tol_pal_ybgF tol-pal 98.5 2.8E-06 6.1E-11 58.7 10.1 98 225-322 3-107 (119)
144 cd00189 TPR Tetratricopeptide 98.5 1.4E-06 3.1E-11 57.3 8.2 92 228-319 4-96 (100)
145 PF12895 Apc3: Anaphase-promot 98.4 1.2E-06 2.6E-11 56.3 7.0 82 61-145 2-83 (84)
146 PF12895 Apc3: Anaphase-promot 98.4 1.8E-07 4E-12 60.1 3.1 81 201-282 2-83 (84)
147 KOG0550 Molecular chaperone (D 98.4 1.1E-05 2.4E-10 65.2 13.3 155 162-322 178-352 (486)
148 PF14938 SNAP: Soluble NSF att 98.4 0.00011 2.4E-09 59.2 19.2 133 121-253 115-266 (282)
149 PRK15363 pathogenicity island 98.4 3.2E-05 7E-10 54.7 13.9 103 119-222 34-137 (157)
150 KOG0553 TPR repeat-containing 98.4 4E-06 8.7E-11 64.9 10.0 90 200-291 93-183 (304)
151 TIGR00756 PPR pentatricopeptid 98.4 6.6E-07 1.4E-11 46.6 4.2 33 155-187 2-34 (35)
152 COG4700 Uncharacterized protei 98.4 8.1E-05 1.7E-09 53.7 15.2 132 184-317 85-219 (251)
153 PF14938 SNAP: Soluble NSF att 98.4 5.4E-05 1.2E-09 60.9 16.5 160 91-253 42-225 (282)
154 PLN03088 SGT1, suppressor of 98.4 1.1E-05 2.3E-10 67.1 12.7 103 196-300 10-113 (356)
155 PF13812 PPR_3: Pentatricopept 98.4 8.8E-07 1.9E-11 45.8 4.1 33 154-186 2-34 (34)
156 cd00189 TPR Tetratricopeptide 98.4 6.1E-06 1.3E-10 54.2 9.4 89 195-285 7-96 (100)
157 PF05843 Suf: Suppressor of fo 98.3 2.5E-05 5.4E-10 62.6 14.0 132 155-289 3-139 (280)
158 PLN03088 SGT1, suppressor of 98.3 1.8E-05 4E-10 65.7 13.3 94 55-152 9-102 (356)
159 KOG1130 Predicted G-alpha GTPa 98.3 6.7E-06 1.5E-10 66.5 10.1 260 26-285 26-343 (639)
160 PF13414 TPR_11: TPR repeat; P 98.3 1.2E-06 2.7E-11 53.9 4.8 65 256-320 2-67 (69)
161 PRK02603 photosystem I assembl 98.3 5.6E-05 1.2E-09 56.0 14.2 86 86-171 37-124 (172)
162 PRK10866 outer membrane biogen 98.3 0.00036 7.7E-09 54.6 18.8 182 120-319 32-240 (243)
163 PF13432 TPR_16: Tetratricopep 98.3 3.4E-06 7.3E-11 51.2 6.1 61 230-290 3-64 (65)
164 PRK02603 photosystem I assembl 98.3 0.00011 2.4E-09 54.5 15.2 88 119-207 34-125 (172)
165 CHL00033 ycf3 photosystem I as 98.3 3.3E-05 7.1E-10 57.0 12.3 62 88-149 39-101 (168)
166 TIGR00756 PPR pentatricopeptid 98.2 1.9E-06 4.2E-11 44.8 3.8 33 50-83 2-34 (35)
167 PRK10153 DNA-binding transcrip 98.2 7.6E-05 1.7E-09 64.9 15.6 140 151-292 335-488 (517)
168 PF05843 Suf: Suppressor of fo 98.2 6.2E-05 1.3E-09 60.4 13.7 141 49-195 2-147 (280)
169 COG4700 Uncharacterized protei 98.2 0.00059 1.3E-08 49.4 16.7 126 81-209 86-214 (251)
170 CHL00033 ycf3 photosystem I as 98.2 9.5E-05 2.1E-09 54.6 13.2 63 154-216 36-100 (168)
171 PF13414 TPR_11: TPR repeat; P 98.2 7.8E-06 1.7E-10 50.2 6.2 66 223-288 2-69 (69)
172 PF13812 PPR_3: Pentatricopept 98.2 4.8E-06 1.1E-10 42.9 4.3 33 189-222 2-34 (34)
173 PF08579 RPM2: Mitochondrial r 98.2 5.7E-05 1.2E-09 49.7 9.9 79 157-236 29-116 (120)
174 COG4235 Cytochrome c biogenesi 98.2 3.5E-05 7.7E-10 60.1 10.5 107 221-327 153-263 (287)
175 PF14559 TPR_19: Tetratricopep 98.1 1.6E-05 3.4E-10 48.7 7.0 59 96-156 3-61 (68)
176 PRK10153 DNA-binding transcrip 98.1 0.00028 6.1E-09 61.4 16.6 67 187-256 419-485 (517)
177 KOG1130 Predicted G-alpha GTPa 98.1 0.00018 3.9E-09 58.5 14.1 262 57-320 26-344 (639)
178 PRK10866 outer membrane biogen 98.1 0.0026 5.6E-08 49.9 20.9 53 230-282 181-237 (243)
179 PF13525 YfiO: Outer membrane 98.1 0.00046 1E-08 52.6 15.6 168 125-310 10-197 (203)
180 PF01535 PPR: PPR repeat; Int 98.1 5.3E-06 1.1E-10 41.7 3.3 29 155-183 2-30 (31)
181 PF13432 TPR_16: Tetratricopep 98.1 3E-05 6.4E-10 47.0 7.1 55 93-149 6-60 (65)
182 KOG0553 TPR repeat-containing 98.1 9.6E-05 2.1E-09 57.5 11.2 97 93-193 90-187 (304)
183 PF13525 YfiO: Outer membrane 98.0 0.0019 4.1E-08 49.3 17.9 173 54-243 11-197 (203)
184 PF12688 TPR_5: Tetratrico pep 98.0 0.00039 8.5E-09 47.5 12.6 93 159-251 7-102 (120)
185 COG3898 Uncharacterized membra 98.0 0.0049 1.1E-07 50.2 23.4 283 19-319 84-391 (531)
186 PF10037 MRP-S27: Mitochondria 98.0 0.00016 3.4E-09 60.6 12.2 116 82-198 64-183 (429)
187 PRK15331 chaperone protein Sic 98.0 7.4E-05 1.6E-09 53.2 8.4 84 235-318 48-132 (165)
188 KOG2053 Mitochondrial inherita 98.0 0.012 2.7E-07 52.9 27.2 222 28-256 20-258 (932)
189 KOG1914 mRNA cleavage and poly 97.9 0.0095 2.1E-07 50.6 22.1 185 100-288 309-503 (656)
190 PF12688 TPR_5: Tetratrico pep 97.9 0.001 2.2E-08 45.5 13.2 88 93-180 10-102 (120)
191 PF13371 TPR_9: Tetratricopept 97.9 2.6E-05 5.5E-10 48.5 5.1 55 266-320 4-58 (73)
192 KOG2796 Uncharacterized conser 97.9 0.002 4.3E-08 49.5 15.7 134 156-290 180-319 (366)
193 KOG0550 Molecular chaperone (D 97.9 0.0017 3.7E-08 53.0 16.2 273 21-300 53-363 (486)
194 PF10037 MRP-S27: Mitochondria 97.9 0.00014 3E-09 60.9 10.6 118 119-237 65-186 (429)
195 PF14559 TPR_19: Tetratricopep 97.9 8.5E-05 1.8E-09 45.4 7.1 60 200-261 3-62 (68)
196 PRK10803 tol-pal system protei 97.9 0.00027 5.8E-09 55.8 11.4 102 190-291 145-251 (263)
197 COG4235 Cytochrome c biogenesi 97.9 0.00048 1E-08 54.0 11.8 101 81-183 153-257 (287)
198 PF04840 Vps16_C: Vps16, C-ter 97.9 0.011 2.3E-07 48.3 22.7 107 190-314 179-285 (319)
199 PRK10803 tol-pal system protei 97.8 0.00013 2.8E-09 57.6 8.5 98 225-322 144-248 (263)
200 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.014 3E-07 48.6 25.2 69 7-75 30-103 (660)
201 PF01535 PPR: PPR repeat; Int 97.8 3.4E-05 7.3E-10 38.7 3.4 28 190-217 2-29 (31)
202 PF06239 ECSIT: Evolutionarily 97.8 0.00052 1.1E-08 51.2 10.6 99 140-239 34-153 (228)
203 KOG2796 Uncharacterized conser 97.8 0.0045 9.7E-08 47.6 15.3 126 194-320 183-315 (366)
204 COG3898 Uncharacterized membra 97.8 0.015 3.2E-07 47.6 28.9 273 32-315 68-353 (531)
205 PF13281 DUF4071: Domain of un 97.7 0.01 2.3E-07 48.9 18.3 169 119-290 140-338 (374)
206 KOG2041 WD40 repeat protein [G 97.7 0.011 2.5E-07 51.8 19.0 191 33-250 679-878 (1189)
207 PF13371 TPR_9: Tetratricopept 97.7 0.00011 2.4E-09 45.6 5.7 61 232-292 3-64 (73)
208 PF03704 BTAD: Bacterial trans 97.7 0.002 4.3E-08 46.3 12.4 69 122-190 64-138 (146)
209 PF08579 RPM2: Mitochondrial r 97.7 0.0011 2.3E-08 43.9 9.5 80 51-132 28-116 (120)
210 KOG1538 Uncharacterized conser 97.7 0.01 2.2E-07 51.6 17.4 89 225-320 748-846 (1081)
211 PF13428 TPR_14: Tetratricopep 97.6 0.00011 2.4E-09 40.3 3.4 42 258-299 2-43 (44)
212 PF13424 TPR_12: Tetratricopep 97.6 0.00026 5.6E-09 44.6 5.5 60 226-285 7-74 (78)
213 PLN03098 LPA1 LOW PSII ACCUMUL 97.5 0.00029 6.4E-09 58.6 6.9 99 222-323 73-177 (453)
214 PF13424 TPR_12: Tetratricopep 97.5 0.0004 8.7E-09 43.7 6.0 59 121-179 6-72 (78)
215 PF03704 BTAD: Bacterial trans 97.5 0.0006 1.3E-08 49.0 7.5 69 258-326 63-136 (146)
216 PF12921 ATP13: Mitochondrial 97.5 0.0026 5.7E-08 43.9 10.2 53 183-235 47-99 (126)
217 COG4105 ComL DNA uptake lipopr 97.5 0.028 6.2E-07 43.4 16.8 176 125-319 39-232 (254)
218 KOG0543 FKBP-type peptidyl-pro 97.4 0.0029 6.4E-08 51.7 10.8 96 225-320 258-355 (397)
219 KOG2041 WD40 repeat protein [G 97.4 0.083 1.8E-06 46.7 22.2 27 120-146 852-878 (1189)
220 PRK15331 chaperone protein Sic 97.4 0.0078 1.7E-07 43.2 11.5 91 125-216 42-133 (165)
221 PF13431 TPR_17: Tetratricopep 97.4 8.7E-05 1.9E-09 38.0 1.2 33 279-311 1-33 (34)
222 COG0457 NrfG FOG: TPR repeat [ 97.4 0.043 9.4E-07 42.5 24.2 226 62-289 37-268 (291)
223 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.0092 2E-07 50.1 13.1 65 117-181 72-140 (453)
224 PF10300 DUF3808: Protein of u 97.3 0.028 6.2E-07 48.8 16.2 163 156-321 191-377 (468)
225 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.054 1.2E-06 45.3 16.5 133 154-290 398-535 (660)
226 COG0457 NrfG FOG: TPR repeat [ 97.3 0.054 1.2E-06 41.9 25.0 222 97-320 36-265 (291)
227 PF06239 ECSIT: Evolutionarily 97.3 0.0043 9.4E-08 46.5 9.4 87 45-133 44-151 (228)
228 PF10300 DUF3808: Protein of u 97.3 0.03 6.6E-07 48.6 16.0 160 124-285 192-375 (468)
229 KOG1585 Protein required for f 97.2 0.046 1E-06 41.8 14.7 58 17-74 31-97 (308)
230 PF13512 TPR_18: Tetratricopep 97.2 0.01 2.2E-07 41.6 10.5 72 231-302 17-93 (142)
231 PF08631 SPO22: Meiosis protei 97.2 0.079 1.7E-06 42.7 23.4 47 28-74 4-62 (278)
232 PF04840 Vps16_C: Vps16, C-ter 97.2 0.095 2.1E-06 42.9 21.8 110 155-283 179-288 (319)
233 PF08631 SPO22: Meiosis protei 97.2 0.088 1.9E-06 42.4 23.3 164 59-224 4-192 (278)
234 COG1729 Uncharacterized protei 97.2 0.0097 2.1E-07 46.3 10.8 91 200-290 153-248 (262)
235 COG1729 Uncharacterized protei 97.1 0.013 2.8E-07 45.6 11.2 102 155-257 144-248 (262)
236 KOG0543 FKBP-type peptidyl-pro 97.1 0.0097 2.1E-07 48.8 10.6 94 56-151 216-322 (397)
237 PF13281 DUF4071: Domain of un 97.1 0.13 2.9E-06 42.6 19.3 167 84-253 141-334 (374)
238 PF12921 ATP13: Mitochondrial 97.1 0.016 3.4E-07 40.1 10.1 28 16-43 1-28 (126)
239 COG4785 NlpI Lipoprotein NlpI, 97.1 0.081 1.7E-06 39.8 16.3 181 98-287 79-267 (297)
240 PRK11906 transcriptional regul 97.0 0.083 1.8E-06 44.7 15.5 160 49-213 252-432 (458)
241 COG3118 Thioredoxin domain-con 97.0 0.12 2.6E-06 40.9 17.2 144 90-238 140-286 (304)
242 KOG4555 TPR repeat-containing 96.9 0.0094 2E-07 40.6 7.6 91 197-289 52-147 (175)
243 PF04184 ST7: ST7 protein; In 96.9 0.23 5.1E-06 42.3 17.2 99 192-290 263-379 (539)
244 PF13512 TPR_18: Tetratricopep 96.9 0.054 1.2E-06 38.0 11.4 56 162-217 19-76 (142)
245 COG4649 Uncharacterized protei 96.9 0.045 9.8E-07 39.5 11.0 137 47-186 58-200 (221)
246 KOG1941 Acetylcholine receptor 96.9 0.077 1.7E-06 43.1 13.5 224 29-252 18-274 (518)
247 COG3118 Thioredoxin domain-con 96.8 0.17 3.6E-06 40.1 16.1 124 127-253 141-265 (304)
248 KOG2280 Vacuolar assembly/sort 96.8 0.33 7.1E-06 43.5 19.7 108 190-314 686-793 (829)
249 KOG1585 Protein required for f 96.8 0.14 3.1E-06 39.3 14.6 194 86-281 33-251 (308)
250 PF04053 Coatomer_WDAD: Coatom 96.8 0.11 2.3E-06 44.7 15.3 161 57-252 270-430 (443)
251 KOG1941 Acetylcholine receptor 96.8 0.041 8.9E-07 44.6 11.6 228 58-285 16-274 (518)
252 COG4649 Uncharacterized protei 96.8 0.11 2.5E-06 37.5 14.5 123 95-217 69-196 (221)
253 PRK11906 transcriptional regul 96.8 0.023 5E-07 47.9 10.4 120 169-290 274-405 (458)
254 PF07079 DUF1347: Protein of u 96.7 0.32 7E-06 41.0 26.2 63 256-319 459-523 (549)
255 COG4785 NlpI Lipoprotein NlpI, 96.6 0.17 3.6E-06 38.2 13.0 182 132-322 77-268 (297)
256 KOG2610 Uncharacterized conser 96.6 0.022 4.8E-07 45.6 9.1 160 165-327 115-283 (491)
257 PF07719 TPR_2: Tetratricopept 96.6 0.007 1.5E-07 30.7 4.5 33 258-290 2-34 (34)
258 KOG2114 Vacuolar assembly/sort 96.6 0.34 7.3E-06 44.0 16.8 174 22-214 339-516 (933)
259 KOG1538 Uncharacterized conser 96.6 0.31 6.6E-06 43.0 16.0 245 17-285 556-845 (1081)
260 PF00515 TPR_1: Tetratricopept 96.6 0.0052 1.1E-07 31.3 3.8 32 258-289 2-33 (34)
261 PF13428 TPR_14: Tetratricopep 96.5 0.011 2.4E-07 32.2 5.0 29 123-151 4-32 (44)
262 PF04053 Coatomer_WDAD: Coatom 96.5 0.28 6E-06 42.3 15.7 158 24-214 268-428 (443)
263 PF09205 DUF1955: Domain of un 96.5 0.16 3.4E-06 35.0 11.1 54 232-285 94-148 (161)
264 KOG4555 TPR repeat-containing 96.4 0.047 1E-06 37.4 8.3 53 94-148 53-105 (175)
265 COG1747 Uncharacterized N-term 96.4 0.56 1.2E-05 40.2 20.1 180 81-267 63-249 (711)
266 COG4105 ComL DNA uptake lipopr 96.3 0.36 7.8E-06 37.5 21.4 56 95-150 45-101 (254)
267 smart00299 CLH Clathrin heavy 96.2 0.25 5.5E-06 35.0 13.6 42 90-133 13-54 (140)
268 KOG4234 TPR repeat-containing 96.2 0.015 3.2E-07 43.0 5.4 103 196-300 103-211 (271)
269 KOG3941 Intermediate in Toll s 96.1 0.08 1.7E-06 41.5 9.4 89 150-239 64-173 (406)
270 KOG2280 Vacuolar assembly/sort 96.0 1.1 2.3E-05 40.4 23.0 285 22-318 442-771 (829)
271 KOG1464 COP9 signalosome, subu 96.0 0.56 1.2E-05 36.8 15.8 51 61-111 40-92 (440)
272 KOG1464 COP9 signalosome, subu 96.0 0.57 1.2E-05 36.7 15.5 262 14-282 23-328 (440)
273 PF13181 TPR_8: Tetratricopept 95.9 0.026 5.7E-07 28.5 4.3 32 258-289 2-33 (34)
274 PRK09687 putative lyase; Provi 95.9 0.7 1.5E-05 37.2 26.0 239 40-301 29-277 (280)
275 PF10602 RPN7: 26S proteasome 95.9 0.46 1E-05 35.2 12.4 96 156-253 39-142 (177)
276 COG3629 DnrI DNA-binding trans 95.9 0.15 3.3E-06 40.5 10.2 59 122-180 155-214 (280)
277 KOG2610 Uncharacterized conser 95.9 0.75 1.6E-05 37.3 16.7 153 130-284 113-274 (491)
278 KOG1920 IkappaB kinase complex 95.9 1.5 3.3E-05 41.7 17.5 140 126-284 914-1053(1265)
279 PF04184 ST7: ST7 protein; In 95.8 1 2.3E-05 38.6 18.3 73 88-160 263-338 (539)
280 PF02259 FAT: FAT domain; Int 95.8 0.92 2E-05 37.9 21.4 274 23-304 4-305 (352)
281 KOG1586 Protein required for f 95.8 0.21 4.6E-06 38.1 10.0 27 265-291 162-188 (288)
282 PF02259 FAT: FAT domain; Int 95.8 0.95 2.1E-05 37.9 17.8 64 256-319 145-212 (352)
283 PF10602 RPN7: 26S proteasome 95.8 0.42 9.1E-06 35.5 11.8 95 120-216 36-141 (177)
284 PF09613 HrpB1_HrpK: Bacterial 95.7 0.49 1.1E-05 34.0 12.0 54 200-256 22-76 (160)
285 smart00299 CLH Clathrin heavy 95.7 0.47 1E-05 33.6 14.0 42 125-166 12-54 (140)
286 PF07079 DUF1347: Protein of u 95.5 1.3 2.8E-05 37.6 22.5 257 26-290 15-331 (549)
287 COG2976 Uncharacterized protei 95.5 0.68 1.5E-05 34.4 13.3 132 153-289 54-191 (207)
288 PF13431 TPR_17: Tetratricopep 95.5 0.015 3.3E-07 29.6 2.4 22 119-140 12-33 (34)
289 PF13176 TPR_7: Tetratricopept 95.5 0.042 9.2E-07 28.3 4.1 27 259-285 1-27 (36)
290 KOG2114 Vacuolar assembly/sort 95.4 0.9 1.9E-05 41.4 14.0 179 86-283 336-516 (933)
291 PF09613 HrpB1_HrpK: Bacterial 95.4 0.68 1.5E-05 33.3 12.9 54 96-151 22-75 (160)
292 KOG1258 mRNA processing protei 95.3 1.8 3.9E-05 38.0 19.6 184 119-305 296-489 (577)
293 COG1747 Uncharacterized N-term 95.3 1.7 3.6E-05 37.6 18.6 178 119-302 65-250 (711)
294 COG3629 DnrI DNA-binding trans 95.3 0.077 1.7E-06 42.1 6.7 62 224-285 153-215 (280)
295 PF13170 DUF4003: Protein of u 95.2 1.4 3E-05 35.9 13.6 129 100-232 78-225 (297)
296 PF00515 TPR_1: Tetratricopept 94.9 0.084 1.8E-06 26.6 4.1 26 123-148 4-29 (34)
297 KOG4648 Uncharacterized conser 94.9 0.049 1.1E-06 43.9 4.5 96 194-292 103-200 (536)
298 KOG0276 Vesicle coat complex C 94.9 0.8 1.7E-05 40.2 11.7 153 60-253 598-750 (794)
299 PF09205 DUF1955: Domain of un 94.8 0.84 1.8E-05 31.6 13.6 68 152-221 85-152 (161)
300 PF13176 TPR_7: Tetratricopept 94.8 0.062 1.3E-06 27.7 3.5 25 50-74 1-25 (36)
301 COG2976 Uncharacterized protei 94.7 1.3 2.8E-05 33.0 13.2 89 127-217 96-188 (207)
302 PF07719 TPR_2: Tetratricopept 94.6 0.11 2.3E-06 26.1 4.1 27 123-149 4-30 (34)
303 KOG4234 TPR repeat-containing 94.6 0.56 1.2E-05 35.0 8.9 54 128-181 142-196 (271)
304 KOG4648 Uncharacterized conser 94.6 0.14 3.1E-06 41.3 6.4 93 160-256 104-197 (536)
305 KOG0276 Vesicle coat complex C 94.5 1.3 2.8E-05 39.0 12.2 151 28-214 597-747 (794)
306 COG3947 Response regulator con 94.4 2.1 4.5E-05 34.2 13.9 61 259-319 281-341 (361)
307 PRK11619 lytic murein transgly 94.4 4 8.6E-05 37.4 27.0 56 228-283 316-372 (644)
308 PF07035 Mic1: Colon cancer-as 94.3 1.5 3.2E-05 32.0 13.3 29 176-204 17-45 (167)
309 KOG3941 Intermediate in Toll s 94.3 0.6 1.3E-05 36.9 8.9 97 37-135 54-173 (406)
310 KOG1920 IkappaB kinase complex 94.3 5.4 0.00012 38.3 19.2 113 186-315 933-1050(1265)
311 TIGR02561 HrpB1_HrpK type III 94.1 1.4 3.1E-05 31.2 11.3 54 96-151 22-75 (153)
312 PF13374 TPR_10: Tetratricopep 94.1 0.14 3E-06 27.1 4.1 28 258-285 3-30 (42)
313 PF02284 COX5A: Cytochrome c o 94.1 0.9 1.9E-05 29.7 8.0 63 169-233 26-88 (108)
314 PF13174 TPR_6: Tetratricopept 94.0 0.12 2.7E-06 25.6 3.6 28 262-289 5-32 (33)
315 PF13174 TPR_6: Tetratricopept 93.2 0.16 3.4E-06 25.2 3.1 27 125-151 5-31 (33)
316 cd00923 Cyt_c_Oxidase_Va Cytoc 93.2 1.1 2.3E-05 29.1 7.1 63 168-232 22-84 (103)
317 PF00637 Clathrin: Region in C 93.2 0.12 2.5E-06 36.9 3.4 51 162-212 16-66 (143)
318 PF13170 DUF4003: Protein of u 92.9 4.4 9.6E-05 33.0 15.0 131 64-197 78-226 (297)
319 PRK15180 Vi polysaccharide bio 92.8 1.7 3.6E-05 37.3 9.8 89 199-289 334-423 (831)
320 PF10345 Cohesin_load: Cohesin 92.8 7.6 0.00017 35.5 24.7 165 47-214 58-251 (608)
321 TIGR02561 HrpB1_HrpK type III 92.7 0.64 1.4E-05 32.9 6.3 55 236-290 22-77 (153)
322 PF06552 TOM20_plant: Plant sp 92.7 1.5 3.3E-05 32.2 8.3 61 254-321 65-137 (186)
323 KOG4570 Uncharacterized conser 92.5 2.3 4.9E-05 34.4 9.7 95 119-217 63-164 (418)
324 PF13181 TPR_8: Tetratricopept 92.5 0.31 6.7E-06 24.4 3.6 26 123-148 4-29 (34)
325 PF11207 DUF2989: Protein of u 92.3 2.3 5E-05 32.0 9.1 72 171-243 124-197 (203)
326 PF06552 TOM20_plant: Plant sp 92.3 2.4 5.3E-05 31.2 8.9 61 101-163 52-123 (186)
327 KOG1258 mRNA processing protei 92.2 7.8 0.00017 34.3 21.3 130 17-148 45-179 (577)
328 COG2909 MalT ATP-dependent tra 92.2 10 0.00022 35.4 22.8 192 95-286 426-647 (894)
329 KOG4642 Chaperone-dependent E3 91.9 0.51 1.1E-05 36.3 5.4 86 198-286 20-107 (284)
330 PF13929 mRNA_stabil: mRNA sta 91.8 4.4 9.5E-05 32.5 10.5 116 167-282 142-263 (292)
331 PRK13800 putative oxidoreducta 91.8 13 0.00028 35.9 25.6 253 38-317 625-878 (897)
332 PF13374 TPR_10: Tetratricopep 91.7 0.52 1.1E-05 24.8 4.1 28 189-216 3-30 (42)
333 KOG2396 HAT (Half-A-TPR) repea 91.7 8.3 0.00018 33.5 18.4 89 228-316 464-555 (568)
334 KOG1308 Hsp70-interacting prot 91.6 0.12 2.6E-06 41.7 1.9 85 237-321 127-212 (377)
335 PF00637 Clathrin: Region in C 91.5 0.1 2.3E-06 37.1 1.5 84 90-179 13-96 (143)
336 PRK10941 hypothetical protein; 91.4 1 2.2E-05 36.0 6.9 57 263-319 187-243 (269)
337 smart00028 TPR Tetratricopepti 91.3 0.31 6.7E-06 23.4 2.8 29 260-288 4-32 (34)
338 KOG4570 Uncharacterized conser 91.1 5.9 0.00013 32.1 10.5 97 154-253 65-164 (418)
339 PRK09687 putative lyase; Provi 91.0 7.2 0.00016 31.5 27.2 232 14-265 34-275 (280)
340 COG4455 ImpE Protein of avirul 90.9 1.8 3.9E-05 32.9 7.3 53 92-146 9-61 (273)
341 KOG1550 Extracellular protein 90.9 12 0.00026 33.8 19.4 85 95-183 260-358 (552)
342 COG4455 ImpE Protein of avirul 90.7 2.1 4.7E-05 32.6 7.5 76 156-232 4-80 (273)
343 PF07721 TPR_4: Tetratricopept 90.6 0.56 1.2E-05 21.9 3.0 21 124-144 5-25 (26)
344 PRK15180 Vi polysaccharide bio 90.2 1.8 4E-05 37.0 7.6 131 132-265 301-433 (831)
345 PF14853 Fis1_TPR_C: Fis1 C-te 90.1 1 2.2E-05 25.6 4.3 31 262-292 6-36 (53)
346 KOG4507 Uncharacterized conser 89.6 1 2.2E-05 39.4 5.8 95 201-298 620-717 (886)
347 PF02284 COX5A: Cytochrome c o 89.5 4.4 9.6E-05 26.7 8.9 59 102-161 28-87 (108)
348 KOG0545 Aryl-hydrocarbon recep 89.5 1.1 2.5E-05 34.6 5.3 100 196-295 186-302 (329)
349 PF13929 mRNA_stabil: mRNA sta 89.4 9.8 0.00021 30.6 11.5 124 51-178 134-263 (292)
350 smart00028 TPR Tetratricopepti 87.7 1.3 2.9E-05 20.9 3.6 23 124-146 5-27 (34)
351 KOG4642 Chaperone-dependent E3 87.4 12 0.00026 29.2 10.7 81 97-179 23-104 (284)
352 PF07035 Mic1: Colon cancer-as 87.1 9.9 0.00022 27.9 14.7 123 150-285 26-148 (167)
353 PF09477 Type_III_YscG: Bacter 86.9 7.1 0.00015 26.0 8.7 79 99-183 21-99 (116)
354 TIGR03504 FimV_Cterm FimV C-te 86.8 1.8 3.9E-05 23.5 3.7 20 127-146 6-25 (44)
355 TIGR03504 FimV_Cterm FimV C-te 86.4 2.1 4.6E-05 23.2 3.8 21 54-74 5-25 (44)
356 COG5159 RPN6 26S proteasome re 86.4 16 0.00034 29.4 13.0 53 262-314 130-188 (421)
357 smart00386 HAT HAT (Half-A-TPR 86.2 1.6 3.6E-05 21.2 3.4 30 271-300 1-30 (33)
358 cd00923 Cyt_c_Oxidase_Va Cytoc 86.0 7.4 0.00016 25.4 8.1 62 203-265 22-84 (103)
359 PF14689 SPOB_a: Sensor_kinase 85.8 3.2 6.9E-05 24.5 4.8 24 157-180 27-50 (62)
360 TIGR02508 type_III_yscG type I 85.7 8 0.00017 25.4 7.8 51 57-114 48-98 (115)
361 PF10579 Rapsyn_N: Rapsyn N-te 85.7 2.8 6.1E-05 26.0 4.5 16 60-75 18-33 (80)
362 PF10345 Cohesin_load: Cohesin 85.6 29 0.00063 31.8 19.1 194 46-249 28-250 (608)
363 KOG4507 Uncharacterized conser 85.4 3.3 7.2E-05 36.5 6.4 124 34-160 590-717 (886)
364 KOG1586 Protein required for f 85.3 16 0.00034 28.5 16.9 60 234-293 164-231 (288)
365 KOG2300 Uncharacterized conser 85.1 25 0.00054 30.6 23.1 295 18-319 89-473 (629)
366 PRK10941 hypothetical protein; 85.0 5.9 0.00013 31.7 7.3 66 228-293 185-251 (269)
367 KOG4077 Cytochrome c oxidase, 84.7 11 0.00023 26.1 7.2 59 171-231 67-125 (149)
368 KOG0376 Serine-threonine phosp 84.4 0.62 1.4E-05 39.6 1.8 97 194-293 10-108 (476)
369 KOG2908 26S proteasome regulat 84.2 19 0.00042 29.6 9.7 64 125-188 80-155 (380)
370 PF11817 Foie-gras_1: Foie gra 84.0 19 0.00042 28.5 11.9 58 226-283 180-244 (247)
371 KOG3364 Membrane protein invol 84.0 7.6 0.00017 27.2 6.4 71 82-152 30-103 (149)
372 PF11846 DUF3366: Domain of un 83.5 7.5 0.00016 29.3 7.2 32 221-252 141-172 (193)
373 PF07163 Pex26: Pex26 protein; 83.3 22 0.00047 28.5 9.4 18 25-42 43-60 (309)
374 cd00280 TRFH Telomeric Repeat 83.2 17 0.00036 27.1 10.8 38 264-302 118-155 (200)
375 PF10366 Vps39_1: Vacuolar sor 83.2 10 0.00022 25.5 6.9 26 156-181 42-67 (108)
376 KOG1550 Extracellular protein 82.5 38 0.00081 30.7 23.2 273 33-320 228-538 (552)
377 COG0790 FOG: TPR repeat, SEL1 81.6 27 0.00058 28.4 16.1 190 28-228 52-276 (292)
378 KOG4279 Serine/threonine prote 81.2 41 0.00089 31.2 11.4 46 234-290 354-399 (1226)
379 KOG0551 Hsp90 co-chaperone CNS 80.9 6.5 0.00014 32.1 6.0 95 190-284 83-180 (390)
380 PF11846 DUF3366: Domain of un 80.7 6.8 0.00015 29.6 6.1 46 243-288 130-175 (193)
381 KOG0545 Aryl-hydrocarbon recep 80.5 18 0.00039 28.4 7.9 96 158-255 183-295 (329)
382 KOG2062 26S proteasome regulat 80.2 50 0.0011 30.6 14.3 254 60-319 369-634 (929)
383 cd08819 CARD_MDA5_2 Caspase ac 80.0 5.1 0.00011 25.5 4.2 61 37-103 22-85 (88)
384 PF14689 SPOB_a: Sensor_kinase 79.9 3.6 7.8E-05 24.3 3.4 24 261-284 27-50 (62)
385 KOG1463 26S proteasome regulat 79.8 34 0.00073 28.4 16.8 262 27-288 14-318 (411)
386 KOG0890 Protein kinase of the 79.6 92 0.002 33.3 22.1 65 256-322 1669-1733(2382)
387 PF07163 Pex26: Pex26 protein; 79.5 31 0.00066 27.7 12.9 121 91-211 42-181 (309)
388 PF11817 Foie-gras_1: Foie gra 79.2 16 0.00035 28.9 7.9 77 138-214 163-244 (247)
389 COG2909 MalT ATP-dependent tra 79.2 59 0.0013 30.8 21.7 193 128-324 423-651 (894)
390 KOG4077 Cytochrome c oxidase, 78.8 14 0.00031 25.4 6.2 58 206-264 67-125 (149)
391 PRK11619 lytic murein transgly 78.6 56 0.0012 30.3 24.6 118 202-319 255-374 (644)
392 PF08311 Mad3_BUB1_I: Mad3/BUB 78.4 20 0.00043 24.9 9.1 44 102-145 81-124 (126)
393 KOG2396 HAT (Half-A-TPR) repea 77.9 48 0.001 29.1 22.0 103 186-290 457-564 (568)
394 PF14561 TPR_20: Tetratricopep 77.9 16 0.00035 23.6 7.3 30 119-148 21-50 (90)
395 PRK12798 chemotaxis protein; R 77.6 45 0.00097 28.6 20.7 183 133-319 125-323 (421)
396 PF00244 14-3-3: 14-3-3 protei 77.4 31 0.00068 27.1 8.9 38 126-163 7-46 (236)
397 KOG0376 Serine-threonine phosp 77.3 5.7 0.00012 34.1 5.0 104 55-163 11-115 (476)
398 COG5191 Uncharacterized conser 77.2 4.4 9.6E-05 32.7 4.1 80 220-299 103-184 (435)
399 TIGR02508 type_III_yscG type I 77.2 18 0.00039 23.9 7.4 47 163-215 49-95 (115)
400 PF12862 Apc5: Anaphase-promot 77.0 17 0.00037 23.6 6.3 23 264-286 48-70 (94)
401 COG5159 RPN6 26S proteasome re 76.9 38 0.00081 27.4 18.2 195 23-217 9-235 (421)
402 KOG2471 TPR repeat-containing 76.7 52 0.0011 28.9 11.4 106 127-235 247-380 (696)
403 KOG4521 Nuclear pore complex, 76.7 81 0.0018 31.1 15.1 80 191-272 986-1069(1480)
404 PF12862 Apc5: Anaphase-promot 76.6 16 0.00034 23.7 6.1 16 59-74 9-24 (94)
405 PF04910 Tcf25: Transcriptiona 76.6 46 0.00099 28.2 13.6 52 265-316 111-164 (360)
406 KOG0890 Protein kinase of the 76.4 1.1E+02 0.0025 32.7 22.6 62 224-286 1670-1731(2382)
407 KOG4814 Uncharacterized conser 75.6 11 0.00023 34.0 6.2 87 234-320 364-457 (872)
408 PF12968 DUF3856: Domain of Un 75.3 18 0.0004 24.8 5.9 59 258-316 56-125 (144)
409 COG4976 Predicted methyltransf 74.3 10 0.00022 29.3 5.2 57 234-290 5-62 (287)
410 PF04097 Nic96: Nup93/Nic96; 73.9 74 0.0016 29.3 18.1 40 22-61 116-158 (613)
411 PF08424 NRDE-2: NRDE-2, neces 73.9 50 0.0011 27.4 19.0 26 262-287 159-184 (321)
412 PF14853 Fis1_TPR_C: Fis1 C-te 73.9 14 0.00031 21.0 5.0 27 126-152 7-33 (53)
413 PF09670 Cas_Cas02710: CRISPR- 73.7 57 0.0012 27.9 12.6 52 130-181 141-197 (379)
414 PF10579 Rapsyn_N: Rapsyn N-te 73.3 7.4 0.00016 24.3 3.5 45 269-313 18-65 (80)
415 PRK13800 putative oxidoreducta 72.6 98 0.0021 30.2 26.3 252 10-285 628-880 (897)
416 COG0790 FOG: TPR repeat, SEL1 72.4 51 0.0011 26.7 18.4 15 239-253 206-220 (292)
417 KOG2063 Vacuolar assembly/sort 72.1 96 0.0021 29.8 15.1 25 50-74 506-530 (877)
418 KOG0687 26S proteasome regulat 72.0 55 0.0012 27.0 13.6 96 119-216 103-209 (393)
419 KOG2659 LisH motif-containing 71.4 46 0.00099 25.8 9.8 21 160-180 71-91 (228)
420 KOG4521 Nuclear pore complex, 71.1 1.1E+02 0.0024 30.2 14.0 124 86-209 985-1123(1480)
421 PF14561 TPR_20: Tetratricopep 71.0 25 0.00054 22.7 8.1 54 82-135 20-73 (90)
422 PF07064 RIC1: RIC1; InterPro 70.8 53 0.0011 26.3 14.0 62 229-290 184-253 (258)
423 PF10255 Paf67: RNA polymerase 70.7 69 0.0015 27.6 12.6 55 20-74 125-190 (404)
424 COG3947 Response regulator con 70.2 58 0.0013 26.5 16.3 60 226-285 281-341 (361)
425 COG4976 Predicted methyltransf 70.1 6 0.00013 30.5 3.2 57 266-322 4-60 (287)
426 PRK10564 maltose regulon perip 69.4 11 0.00024 30.5 4.7 28 89-116 262-289 (303)
427 PRK10564 maltose regulon perip 69.1 12 0.00027 30.2 4.9 38 156-193 260-297 (303)
428 PF09986 DUF2225: Uncharacteri 68.9 17 0.00037 28.0 5.6 25 296-320 170-194 (214)
429 PF10366 Vps39_1: Vacuolar sor 68.4 33 0.00072 23.0 7.2 25 50-74 41-65 (108)
430 KOG0991 Replication factor C, 68.4 56 0.0012 25.7 13.2 40 175-216 181-220 (333)
431 PF04762 IKI3: IKI3 family; I 68.2 1.2E+02 0.0027 29.6 16.6 209 42-283 682-927 (928)
432 KOG0686 COP9 signalosome, subu 68.2 76 0.0017 27.1 15.6 176 85-265 151-352 (466)
433 PF04190 DUF410: Protein of un 68.2 61 0.0013 26.0 17.5 222 59-317 1-254 (260)
434 PF10255 Paf67: RNA polymerase 67.8 80 0.0017 27.2 14.0 62 86-147 124-191 (404)
435 KOG2066 Vacuolar assembly/sort 67.6 1.1E+02 0.0024 28.7 21.2 27 121-147 506-532 (846)
436 PF08424 NRDE-2: NRDE-2, neces 66.8 74 0.0016 26.4 16.4 114 208-323 51-186 (321)
437 PF11207 DUF2989: Protein of u 66.3 56 0.0012 24.9 15.9 77 130-208 117-198 (203)
438 PF08311 Mad3_BUB1_I: Mad3/BUB 66.2 41 0.0009 23.3 9.2 43 171-213 81-124 (126)
439 COG4259 Uncharacterized protei 66.0 35 0.00076 22.4 6.1 54 103-157 56-109 (121)
440 PF11838 ERAP1_C: ERAP1-like C 65.7 76 0.0016 26.2 17.1 181 32-213 55-262 (324)
441 PF09986 DUF2225: Uncharacteri 65.5 61 0.0013 25.0 9.5 25 229-253 170-194 (214)
442 PF02184 HAT: HAT (Half-A-TPR) 64.8 16 0.00035 18.2 3.1 21 136-156 3-23 (32)
443 KOG1839 Uncharacterized protei 64.0 1.5E+02 0.0032 29.8 11.3 65 82-146 971-1041(1236)
444 PF11663 Toxin_YhaV: Toxin wit 63.9 8.4 0.00018 26.9 2.7 31 165-197 107-137 (140)
445 cd08819 CARD_MDA5_2 Caspase ac 63.6 36 0.00079 21.8 7.0 37 200-242 48-84 (88)
446 KOG4567 GTPase-activating prot 63.4 83 0.0018 25.8 10.1 45 208-253 263-307 (370)
447 KOG3364 Membrane protein invol 63.0 51 0.0011 23.3 8.8 19 197-215 80-98 (149)
448 KOG2422 Uncharacterized conser 62.7 1.2E+02 0.0026 27.4 19.0 158 60-217 250-448 (665)
449 COG0735 Fur Fe2+/Zn2+ uptake r 62.5 55 0.0012 23.4 7.5 62 176-239 9-70 (145)
450 PF07827 KNTase_C: KNTase C-te 62.4 41 0.00088 23.7 5.7 61 256-318 58-118 (143)
451 PF07720 TPR_3: Tetratricopept 62.3 20 0.00044 18.4 4.4 27 262-288 6-34 (36)
452 KOG1839 Uncharacterized protei 62.2 1.6E+02 0.0035 29.5 11.3 157 129-285 941-1127(1236)
453 KOG3824 Huntingtin interacting 62.1 10 0.00023 30.7 3.3 61 234-294 126-187 (472)
454 KOG2659 LisH motif-containing 60.9 77 0.0017 24.6 8.5 61 49-112 27-92 (228)
455 PF11848 DUF3368: Domain of un 60.7 27 0.00058 19.3 4.8 31 165-195 14-44 (48)
456 PF07575 Nucleopor_Nup85: Nup8 60.7 38 0.00082 30.8 7.0 61 120-180 405-465 (566)
457 KOG2063 Vacuolar assembly/sort 59.8 1.7E+02 0.0037 28.3 14.3 18 27-44 356-373 (877)
458 smart00777 Mad3_BUB1_I Mad3/BU 59.7 56 0.0012 22.7 8.7 44 101-144 80-123 (125)
459 PF14863 Alkyl_sulf_dimr: Alky 58.8 63 0.0014 23.0 6.4 47 262-308 75-121 (141)
460 PF13934 ELYS: Nuclear pore co 58.4 87 0.0019 24.5 15.3 105 155-269 78-184 (226)
461 PF12583 TPPII_N: Tripeptidyl 58.0 52 0.0011 23.0 5.5 41 265-305 84-124 (139)
462 COG2912 Uncharacterized conser 57.9 38 0.00083 27.1 5.7 55 265-319 189-243 (269)
463 COG0735 Fur Fe2+/Zn2+ uptake r 57.8 67 0.0015 23.0 7.0 57 76-134 13-69 (145)
464 COG2256 MGS1 ATPase related to 57.5 1.3E+02 0.0027 26.0 13.7 47 156-202 249-298 (436)
465 PF13934 ELYS: Nuclear pore co 56.9 93 0.002 24.3 11.2 105 50-165 78-184 (226)
466 cd08326 CARD_CASP9 Caspase act 56.8 20 0.00043 22.8 3.3 31 32-62 45-75 (84)
467 PF02847 MA3: MA3 domain; Int 56.7 48 0.001 22.2 5.6 22 125-146 7-28 (113)
468 KOG3807 Predicted membrane pro 56.7 1.2E+02 0.0025 25.3 16.0 59 194-252 281-339 (556)
469 PF15469 Sec5: Exocyst complex 56.5 81 0.0017 23.5 7.2 18 198-215 96-113 (182)
470 PF10475 DUF2450: Protein of u 55.8 1.1E+02 0.0024 24.9 13.0 24 185-208 194-217 (291)
471 KOG1308 Hsp70-interacting prot 55.5 31 0.00067 28.6 4.9 91 96-188 126-217 (377)
472 KOG3636 Uncharacterized conser 55.5 1.4E+02 0.003 25.9 13.3 33 184-216 179-211 (669)
473 COG4941 Predicted RNA polymera 55.4 1.2E+02 0.0027 25.3 10.7 117 169-290 272-398 (415)
474 TIGR01503 MthylAspMut_E methyl 54.8 1.2E+02 0.0027 26.5 8.4 45 99-147 69-113 (480)
475 COG5108 RPO41 Mitochondrial DN 54.6 1.3E+02 0.0029 27.7 8.9 75 89-165 33-115 (1117)
476 KOG2297 Predicted translation 54.1 1.2E+02 0.0027 24.9 11.6 42 69-111 151-194 (412)
477 PF13762 MNE1: Mitochondrial s 53.7 81 0.0017 22.6 11.0 80 122-201 41-128 (145)
478 PF13762 MNE1: Mitochondrial s 53.4 82 0.0018 22.6 7.8 75 20-95 42-126 (145)
479 PF02847 MA3: MA3 domain; Int 52.9 63 0.0014 21.6 5.7 22 53-74 7-28 (113)
480 PF12069 DUF3549: Protein of u 52.9 1.4E+02 0.003 25.1 13.2 168 18-199 130-309 (340)
481 TIGR02710 CRISPR-associated pr 52.4 1.5E+02 0.0033 25.4 10.0 52 162-213 139-196 (380)
482 KOG3824 Huntingtin interacting 52.3 18 0.00039 29.4 3.1 54 199-255 127-181 (472)
483 PF11123 DNA_Packaging_2: DNA 51.6 55 0.0012 20.1 4.6 29 32-60 12-43 (82)
484 KOG1114 Tripeptidyl peptidase 50.8 2.5E+02 0.0054 27.4 12.1 180 101-305 1092-1281(1304)
485 cd00280 TRFH Telomeric Repeat 50.7 1.1E+02 0.0023 23.1 9.7 19 197-215 120-138 (200)
486 KOG2300 Uncharacterized conser 50.6 1.8E+02 0.0039 25.8 20.0 89 57-146 332-430 (629)
487 PF14669 Asp_Glu_race_2: Putat 49.7 1.1E+02 0.0025 23.2 9.6 24 159-182 138-161 (233)
488 KOG2066 Vacuolar assembly/sort 49.6 2.3E+02 0.0051 26.8 22.8 148 24-181 363-533 (846)
489 KOG4279 Serine/threonine prote 49.1 2.4E+02 0.0052 26.7 12.7 27 121-147 202-228 (1226)
490 PHA02537 M terminase endonucle 49.0 1.3E+02 0.0028 23.6 9.6 22 269-290 190-211 (230)
491 PRK11639 zinc uptake transcrip 48.7 1.1E+02 0.0023 22.6 7.1 68 65-134 7-74 (169)
492 COG4259 Uncharacterized protei 48.6 77 0.0017 20.9 6.2 25 234-258 82-106 (121)
493 PF03745 DUF309: Domain of unk 48.2 57 0.0012 19.3 5.1 6 171-176 17-22 (62)
494 KOG2422 Uncharacterized conser 48.1 2.2E+02 0.0047 25.9 15.2 52 198-250 352-404 (665)
495 PRK13342 recombination factor 46.6 2E+02 0.0043 25.0 17.5 33 166-198 243-275 (413)
496 KOG0551 Hsp90 co-chaperone CNS 46.4 1.8E+02 0.0038 24.4 8.3 60 92-151 89-150 (390)
497 PF11768 DUF3312: Protein of u 45.9 2.3E+02 0.0049 25.6 10.8 21 126-146 414-434 (545)
498 cd07153 Fur_like Ferric uptake 45.7 62 0.0013 21.8 4.7 12 171-182 18-29 (116)
499 KOG2297 Predicted translation 45.4 1.7E+02 0.0038 24.1 13.9 21 256-276 320-340 (412)
500 COG5108 RPO41 Mitochondrial DN 45.1 1.4E+02 0.003 27.7 7.5 70 22-95 33-114 (1117)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.9e-56 Score=398.96 Aligned_cols=312 Identities=30% Similarity=0.542 Sum_probs=301.3
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHH
Q 048799 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAI 94 (331)
Q Consensus 15 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (331)
||..+|++|+++|++.|++++|.++|++|.++|+.+||.++.+|++.|++++|+++|++| ...|+.||..||+.++.+|
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M-~~~g~~pd~~t~~~ll~a~ 335 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM-RDSGVSIDQFTFSIMIRIF 335 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHH
Confidence 456677889999999999999999999999999999999999999999999999999999 7788999999999999999
Q ss_pred hhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHH
Q 048799 95 WQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVE 174 (331)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 174 (331)
++.|++++|.+++..+.+.|..| +..+++.|+++|++.|++++|.++|++|. .||..+||.+|.+|++.|+.++|++
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~--~~d~~t~n~lI~~y~~~G~~~~A~~ 412 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPL-DIVANTALVDLYSKWGRMEDARNVFDRMP--RKNLISWNALIAGYGNHGRGTKAVE 412 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCC-CeeehHHHHHHHHHCCCHHHHHHHHHhCC--CCCeeeHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999 99999999999999999999999999995 5899999999999999999999999
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCC
Q 048799 175 NFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254 (331)
Q Consensus 175 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 254 (331)
+|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.++++++...
T Consensus 413 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~- 491 (697)
T PLN03081 413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK- 491 (697)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCC-
Confidence 9999999999999999999999999999999999999999886799999999999999999999999999999998654
Q ss_pred ccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhccccCCCCCCCC
Q 048799 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331 (331)
Q Consensus 255 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~sw~ 331 (331)
|+..+|+.++.+|...|+++.|..+++++.+..|++...|..++.+|.+.|++++|.++++.|++.|+.+.||+|||
T Consensus 492 p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i 568 (697)
T PLN03081 492 PTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWI 568 (697)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEE
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999996
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.9e-53 Score=382.60 Aligned_cols=321 Identities=15% Similarity=0.186 Sum_probs=214.3
Q ss_pred ccchhHHhhhcC----CchHHHHHHHHHHHHHcCCHHHHHHHHhhCC----CCCchhHHHHHHHHHhcCChhHHHHHHHH
Q 048799 2 LKDGSKLFDELP----ERNLVTWNVMITGLVKWGELEYARSLFEEMP----CRNVVSWTGIIDGYTRMNRSNGALALFRR 73 (331)
Q Consensus 2 ~~~A~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 73 (331)
++.|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 445666666654 4666666666666666666666666666665 35666666666666666666666666666
Q ss_pred HHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhh--cCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc--
Q 048799 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEK--RGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE-- 149 (331)
Q Consensus 74 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 149 (331)
| ...|+.||..+|+.++.+|++.|++++|.++|++|.+ .|+.| |..+|+.++.+|++.|++++|.++|+.|.+.
T Consensus 533 M-~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 533 M-RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred H-HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 6 5556666666666666666666666666666666654 44555 6666666666666666666666666666555
Q ss_pred CCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHH
Q 048799 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC 229 (331)
Q Consensus 150 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 229 (331)
.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++++|.+. |+.|+..+|+.
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-G~~pd~~tyns 689 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTVSYSS 689 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHH
Confidence 35666666666666667777777777777766666677777777777777777777777777777666 66777777777
Q ss_pred HHHHHHhcCCHHHHHHHHhhcccC--CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHh--hcCCCccHHHHHHHHhhhc
Q 048799 230 LIDMLGRAGRLEQAEKVASGIPSE--ITNVVVWRTLLGACSFHGNVEMGERVTRKILEM--ERGYGGDYVLMYNILAGVW 305 (331)
Q Consensus 230 l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 305 (331)
++.+|++.|++++|.++|++|... .|+..+|+.||.+|++.|++++|.++|++|.+. .|+. .+|..++.+|.+.|
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~-~Ty~sLL~a~~k~G 768 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT-ITYSILLVASERKD 768 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHCC
Confidence 777777777777777777766544 566777777777777777777777777776653 2333 66667777777777
Q ss_pred cCcchHHHHHHHhhccccCCC
Q 048799 306 RYGDAERLRRVVDERNALKFP 326 (331)
Q Consensus 306 ~~~~a~~~~~~~~~~~~~~~~ 326 (331)
+.++|.++++.|.+.|+.|+.
T Consensus 769 ~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 769 DADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCH
Confidence 777777777777776666553
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.1e-53 Score=380.56 Aligned_cols=321 Identities=17% Similarity=0.237 Sum_probs=305.8
Q ss_pred ccchhHHhhhcCCchHHHHHHHHHHHHHcCCHHHHHHHHhhCC----CCCchhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048799 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMP----CRNVVSWTGIIDGYTRMNRSNGALALFRRMVAC 77 (331)
Q Consensus 2 ~~~A~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 77 (331)
+++|.++|+.|..||..+|+.++.+|++.|+++.|.++|++|. .||..+|+.||.+|++.|++++|.++|++| ..
T Consensus 422 ~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM-~~ 500 (1060)
T PLN03218 422 VKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM-VN 500 (1060)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHH-HH
Confidence 4678889999999999999999999999999999999999997 589999999999999999999999999999 77
Q ss_pred cCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc----CCcH
Q 048799 78 EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE----RKNL 153 (331)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~ 153 (331)
.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.| |..+|+.++.+|++.|++++|.++|++|... .|+.
T Consensus 501 ~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~ 579 (1060)
T PLN03218 501 AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH
Confidence 8899999999999999999999999999999999999999 9999999999999999999999999999752 6899
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHH
Q 048799 154 VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDM 233 (331)
Q Consensus 154 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 233 (331)
.+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+. |+.||..+|+.++.+
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI~a 658 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDV 658 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred HHhcCCHHHHHHHHhhcccC--CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHh--hcCCCccHHHHHHHHhhhccCcc
Q 048799 234 LGRAGRLEQAEKVASGIPSE--ITNVVVWRTLLGACSFHGNVEMGERVTRKILEM--ERGYGGDYVLMYNILAGVWRYGD 309 (331)
Q Consensus 234 ~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 309 (331)
|++.|++++|.++++.|.+. .|+..+|+.+|.+|++.|++++|.++|++|.+. .|+ ..+|..++.+|++.|++++
T Consensus 659 ~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~ee 737 (1060)
T PLN03218 659 AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPK 737 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999987 899999999999999999999999999999874 454 4889999999999999999
Q ss_pred hHHHHHHHhhccccCCC
Q 048799 310 AERLRRVVDERNALKFP 326 (331)
Q Consensus 310 a~~~~~~~~~~~~~~~~ 326 (331)
|.++|++|.+.|+.|+.
T Consensus 738 Alelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 738 ALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HHHHHHHHHHcCCCCCH
Confidence 99999999999988764
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.4e-53 Score=386.27 Aligned_cols=326 Identities=34% Similarity=0.643 Sum_probs=299.9
Q ss_pred cchhHHhhhcC----CchHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 048799 3 KDGSKLFDELP----ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACE 78 (331)
Q Consensus 3 ~~A~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 78 (331)
+.|.+++..+. .||..+|+.|+.+|++.|++++|.++|++|..||..+|+.++.+|++.|++++|+++|++| ...
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M-~~~ 383 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM-EQD 383 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHH-HHh
Confidence 34555555543 5788889999999999999999999999999999999999999999999999999999999 778
Q ss_pred CCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc---------
Q 048799 79 YTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE--------- 149 (331)
Q Consensus 79 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------- 149 (331)
|+.||..||+.++.+|++.|+++.|.++++.+.+.|..+ +..+++.|+.+|++.|++++|.++|++|...
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi 462 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS-YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSII 462 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHH
Confidence 899999999999999999999999999999999999988 8889999999999999888888888876431
Q ss_pred --------------------------------------------------------------------------------
Q 048799 150 -------------------------------------------------------------------------------- 149 (331)
Q Consensus 150 -------------------------------------------------------------------------------- 149 (331)
T Consensus 463 ~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~ 542 (857)
T PLN03077 463 AGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542 (857)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHH
Confidence
Q ss_pred --------CCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCC
Q 048799 150 --------RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVL 221 (331)
Q Consensus 150 --------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 221 (331)
.+|..+||.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.
T Consensus 543 A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~ 622 (857)
T PLN03077 543 AWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622 (857)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC
Confidence 245667889999999999999999999999999999999999999999999999999999999999666999
Q ss_pred CcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 048799 222 PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301 (331)
Q Consensus 222 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (331)
|+..+|+.++.+|++.|++++|.+++++|.- .|+..+|+.|+.+|...|+.+.++.+.+++.++.|++...|..+...|
T Consensus 623 P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~-~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~y 701 (857)
T PLN03077 623 PNLKHYACVVDLLGRAGKLTEAYNFINKMPI-TPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLY 701 (857)
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Confidence 9999999999999999999999999999964 499999999999999999999999999999999999999999999999
Q ss_pred hhhccCcchHHHHHHHhhccccCCCCCCCC
Q 048799 302 AGVWRYGDAERLRRVVDERNALKFPGRSLV 331 (331)
Q Consensus 302 ~~~g~~~~a~~~~~~~~~~~~~~~~~~sw~ 331 (331)
...|+|++|.++.+.|++.|+.+.||+|||
T Consensus 702 a~~g~~~~a~~vr~~M~~~g~~k~~g~s~i 731 (857)
T PLN03077 702 ADAGKWDEVARVRKTMRENGLTVDPGCSWV 731 (857)
T ss_pred HHCCChHHHHHHHHHHHHcCCCCCCCccEE
Confidence 999999999999999999999999999997
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-50 Score=361.91 Aligned_cols=317 Identities=25% Similarity=0.356 Sum_probs=299.3
Q ss_pred ccchhHHhhhcC----CchHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048799 2 LKDGSKLFDELP----ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVAC 77 (331)
Q Consensus 2 ~~~A~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 77 (331)
++.|.+++..|. .||..+|+.++.+|++.|+++.|.++|++|.+||..+||.++.+|++.|++++|+++|++| ..
T Consensus 139 ~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M-~~ 217 (697)
T PLN03081 139 IRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREM-WE 217 (697)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHH-HH
Confidence 355677777775 6899999999999999999999999999999999999999999999999999999999999 67
Q ss_pred cCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHH
Q 048799 78 EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 157 (331)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 157 (331)
.|+.|+..+|+.++.+|+..|+.+.+.+++..+.+.|..+ +..+++.|+.+|++.|++++|.++|++|. .++..+||
T Consensus 218 ~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~~~vt~n 294 (697)
T PLN03081 218 DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG-DTFVSCALIDMYSKCGDIEDARCVFDGMP--EKTTVAWN 294 (697)
T ss_pred hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCc-cceeHHHHHHHHHHCCCHHHHHHHHHhCC--CCChhHHH
Confidence 7899999999999999999999999999999999999999 99999999999999999999999999994 57999999
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhc
Q 048799 158 SIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237 (331)
Q Consensus 158 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (331)
.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|++++|.+++..|.+. |++||..+++.|+.+|++.
T Consensus 295 ~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 295 SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKW 373 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHHh--hcCCCccHHHHHHHHhhhccCcchHHHHH
Q 048799 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM--ERGYGGDYVLMYNILAGVWRYGDAERLRR 315 (331)
Q Consensus 238 g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 315 (331)
|++++|.++|++|.+ ||..+|+.||.+|++.|+.++|.++|++|.+. .|+. .+|..++.+|.+.|..++|.++|+
T Consensus 374 G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~~~~a~~~f~ 450 (697)
T PLN03081 374 GRMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH-VTFLAVLSACRYSGLSEQGWEIFQ 450 (697)
T ss_pred CCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHH
Confidence 999999999999986 69999999999999999999999999999984 4554 889999999999999999999999
Q ss_pred HHhh-ccccCCC
Q 048799 316 VVDE-RNALKFP 326 (331)
Q Consensus 316 ~~~~-~~~~~~~ 326 (331)
.|.+ .|+.|+.
T Consensus 451 ~m~~~~g~~p~~ 462 (697)
T PLN03081 451 SMSENHRIKPRA 462 (697)
T ss_pred HHHHhcCCCCCc
Confidence 9986 4777654
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.1e-48 Score=352.28 Aligned_cols=304 Identities=26% Similarity=0.393 Sum_probs=283.3
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHH
Q 048799 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAI 94 (331)
Q Consensus 15 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (331)
||..+|++|+.+|++.|++++|.++|++|+.||..+||++|.+|++.|++++|+++|++| ...|+.||..||+.++.+|
T Consensus 220 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M-~~~g~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 220 LDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM-RELSVDPDLMTITSVISAC 298 (857)
T ss_pred cccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCChhHHHHHHHHH
Confidence 445556778888999999999999999999999999999999999999999999999999 7788999999999999999
Q ss_pred hhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHH
Q 048799 95 WQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVE 174 (331)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 174 (331)
++.|+.+.+.+++..+.+.|..| |..+|+.|+.+|++.|++++|.++|++|. .|+..+|+.+|.+|++.|++++|++
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~d~~s~n~li~~~~~~g~~~~A~~ 375 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRME--TKDAVSWTAMISGYEKNGLPDKALE 375 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCcc-chHHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCeeeHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999 99999999999999999999999999995 6889999999999999999999999
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCC
Q 048799 175 NFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254 (331)
Q Consensus 175 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 254 (331)
+|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+. |+.|+..+++.|+.+|++.|++++|.++|++|.+
T Consensus 376 lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-- 452 (857)
T PLN03077 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIPE-- 452 (857)
T ss_pred HHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC--
Confidence 9999999999999999999999999999999999999999998 9999999999999999999999999999999987
Q ss_pred ccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhccccCC
Q 048799 255 TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKF 325 (331)
Q Consensus 255 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 325 (331)
++..+|+.++.+|++.|+.++|..+|++|.+..+.+..+|..++.+|.+.|..+.+.+++..+.+.|+.++
T Consensus 453 ~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~ 523 (857)
T PLN03077 453 KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD 523 (857)
T ss_pred CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc
Confidence 58899999999999999999999999999874334447888888888888888888888888877776554
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.96 E-value=1.6e-25 Score=189.00 Aligned_cols=299 Identities=10% Similarity=0.005 Sum_probs=247.8
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCC--C-CchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCc---hHHHHHHHHHHhh
Q 048799 23 MITGLVKWGELEYARSLFEEMPC--R-NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPS---EITILAVFPAIWQ 96 (331)
Q Consensus 23 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 96 (331)
....+...|++++|...|+++.+ | +..++..+...+...|++++|..+++.++. .+..++ ...+..+...+..
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLS-RPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHH
Confidence 34556788999999999999973 3 445788999999999999999999999844 322121 2467888999999
Q ss_pred cCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc------HHHHHHHHHHHHccCChH
Q 048799 97 NGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN------LVSWTSIISGFAMHGMGK 170 (331)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~ 170 (331)
.|++++|..+|+++.+..+. +..++..++.++.+.|++++|.+.++.+....|+ ...+..+...+.+.|+++
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDF--AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcc--hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999987432 7788999999999999999999999999876442 124566778889999999
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhc
Q 048799 171 EAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI 250 (331)
Q Consensus 171 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 250 (331)
+|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. +......++..++.+|...|++++|.+.++++
T Consensus 198 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 198 AARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998753 234567788889999999999999999999875 32223467888999999999999999999999
Q ss_pred ccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhh---hccCcchHHHHHHHhhccccCCCC
Q 048799 251 PSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG---VWRYGDAERLRRVVDERNALKFPG 327 (331)
Q Consensus 251 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 327 (331)
....|+...+..++..+.+.|++++|..+++++.+..|++ ..+..++..+.. .|+.+++..++++|.++++.++|.
T Consensus 276 ~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~-~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 276 LEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSL-RGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH-HHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 8877777777889999999999999999999999988987 456555555543 568999999999999999998886
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=2.3e-25 Score=207.60 Aligned_cols=311 Identities=12% Similarity=0.043 Sum_probs=187.7
Q ss_pred ccchhHHhhhcC---CchHHHHHHHHHHHHHcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048799 2 LKDGSKLFDELP---ERNLVTWNVMITGLVKWGELEYARSLFEEMP---CRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75 (331)
Q Consensus 2 ~~~A~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 75 (331)
.++|...|+++. +.+...+..++..+.+.|++++|..+++.+. ..+...|..+..++...|++++|...|+++.
T Consensus 549 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 628 (899)
T TIGR02917 549 EEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL 628 (899)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 355666666653 3345566666677777777777777777664 2344566667777777777777777777663
Q ss_pred hccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHH
Q 048799 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLV 154 (331)
Q Consensus 76 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 154 (331)
... +.+...+..+..++...|++++|...++++.+..+. +...+..++..+...|++++|..+++.+....| +..
T Consensus 629 ~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 704 (899)
T TIGR02917 629 ALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD--NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAAL 704 (899)
T ss_pred HhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChH
Confidence 322 234455666666666677777777777766665433 455666666666666666666666666655533 445
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHH
Q 048799 155 SWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDML 234 (331)
Q Consensus 155 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 234 (331)
.+..+...+...|++++|++.|+++...+ |+..++..++.++.+.|++++|.+.++++.+. .+.+...+..+...|
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~ 780 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELY 780 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 55566666666666666666666665533 44455555666666666666666666666553 233555566666666
Q ss_pred HhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHH
Q 048799 235 GRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313 (331)
Q Consensus 235 ~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 313 (331)
...|++++|.++|+++... ++++..+..+...+...|+ ++|+..++++.+..|+++..+..++.++...|++++|...
T Consensus 781 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 859 (899)
T TIGR02917 781 LAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPL 859 (899)
T ss_pred HHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666666666555 3345555555555555555 5566666665555555555555555555555666666666
Q ss_pred HHHHhhcc
Q 048799 314 RRVVDERN 321 (331)
Q Consensus 314 ~~~~~~~~ 321 (331)
++++.+.+
T Consensus 860 ~~~a~~~~ 867 (899)
T TIGR02917 860 LRKAVNIA 867 (899)
T ss_pred HHHHHhhC
Confidence 65555543
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=8e-25 Score=203.99 Aligned_cols=308 Identities=12% Similarity=0.057 Sum_probs=183.1
Q ss_pred cchhHHhhhcC---CchHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048799 3 KDGSKLFDELP---ERNLVTWNVMITGLVKWGELEYARSLFEEMPC---RNVVSWTGIIDGYTRMNRSNGALALFRRMVA 76 (331)
Q Consensus 3 ~~A~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 76 (331)
++|.++++.+. +.+..+|..++.++.+.|++++|...|+.+.+ .+...+..+...+...|++++|...|+++..
T Consensus 584 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 584 KKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555555544 33455666666666666666666666665541 2344555666666666666666666666532
Q ss_pred ccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHH
Q 048799 77 CEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 156 (331)
Q Consensus 77 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 156 (331)
. .+.+..++..+...+...|++++|..+++.+.+..+. +...+..++..+...|++++|...|+++....|+..++
T Consensus 664 ~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 739 (899)
T TIGR02917 664 L--KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK--AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA 739 (899)
T ss_pred c--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC--ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHH
Confidence 1 1234555666666666666666666666666655433 44555556666666666666666666665555555555
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHh
Q 048799 157 TSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236 (331)
Q Consensus 157 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 236 (331)
..++.++.+.|++++|.+.++++.... +.+...+..+...|...|++++|..+|+++.+. .+++...+..++..+..
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLE 816 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 556666666666666666666665532 334555566666666666666666666666553 23455566666666666
Q ss_pred cCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHH
Q 048799 237 AGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315 (331)
Q Consensus 237 ~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 315 (331)
.|+ .+|...++++... +.++.++..+...+...|++++|.+.++++++.+|.++.++..++.++.+.|++++|.++++
T Consensus 817 ~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 817 LKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELD 895 (899)
T ss_pred cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666 5566666665554 22345555566666666666666666666666666666666666666666666666666666
Q ss_pred HHh
Q 048799 316 VVD 318 (331)
Q Consensus 316 ~~~ 318 (331)
+|.
T Consensus 896 ~~~ 898 (899)
T TIGR02917 896 KLL 898 (899)
T ss_pred HHh
Confidence 654
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=7.2e-24 Score=178.99 Aligned_cols=280 Identities=15% Similarity=0.127 Sum_probs=235.2
Q ss_pred CccchhHHhhhcC--Cc-hHHHHHHHHHHHHHcCCHHHHHHHHhhCCC-CC------chhHHHHHHHHHhcCChhHHHHH
Q 048799 1 FLKDGSKLFDELP--ER-NLVTWNVMITGLVKWGELEYARSLFEEMPC-RN------VVSWTGIIDGYTRMNRSNGALAL 70 (331)
Q Consensus 1 ~~~~A~~~~~~~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~------~~~~~~l~~~~~~~~~~~~a~~~ 70 (331)
++++|++.|.++. .| +..++..+...+.+.|++++|..+++.+.. |+ ...+..++..|.+.|++++|..+
T Consensus 50 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~ 129 (389)
T PRK11788 50 QPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEEL 129 (389)
T ss_pred ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3578899999887 34 567899999999999999999999998864 22 24678889999999999999999
Q ss_pred HHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcch---hHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 048799 71 FRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH---IHVSNCLIDTYAKCGCIFSALKLFEDIS 147 (331)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 147 (331)
|+++... .+++..++..++..+...|++++|.+.++.+.+.++.+.. ...+..++..+.+.|++++|...|+++.
T Consensus 130 ~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 207 (389)
T PRK11788 130 FLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKAL 207 (389)
T ss_pred HHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999432 2456778999999999999999999999999987654312 2345677888999999999999999998
Q ss_pred hcCCc-HHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhh
Q 048799 148 VERKN-LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH 226 (331)
Q Consensus 148 ~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 226 (331)
+..|+ ...+..+...+.+.|++++|.++|+++...+......++..++.+|...|++++|...++++.+. .|+...
T Consensus 208 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~ 284 (389)
T PRK11788 208 AADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADL 284 (389)
T ss_pred hHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchH
Confidence 77654 66788888999999999999999999987543333467888999999999999999999999865 466677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhc---CCchhHHHHHHHHHHH
Q 048799 227 YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF---HGNVEMGERVTRKILE 285 (331)
Q Consensus 227 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 285 (331)
+..++..+.+.|++++|..+++++....|+...+..++..+.. .|+.+++..+++++.+
T Consensus 285 ~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 285 LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 7889999999999999999999988888888888888877664 5689999999999987
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=1.3e-23 Score=172.71 Aligned_cols=311 Identities=14% Similarity=0.133 Sum_probs=235.4
Q ss_pred ccchhHHhhhcC--Cc-hHHHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC-----------------------------
Q 048799 2 LKDGSKLFDELP--ER-NLVTWNVMITGLVKWGELEYARSLFEEMPC--RN----------------------------- 47 (331)
Q Consensus 2 ~~~A~~~~~~~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----------------------------- 47 (331)
+++|+.+++.+. +| .+..|..+..++...|+.+.|.+.|.+..+ |+
T Consensus 132 ~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi 211 (966)
T KOG4626|consen 132 LQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAI 211 (966)
T ss_pred HHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHH
Confidence 456666666655 33 456677777777777766666666655431 11
Q ss_pred ------chhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCc-hHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchh
Q 048799 48 ------VVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPS-EITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI 120 (331)
Q Consensus 48 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 120 (331)
..+|+.|...+..+|+...|++.|++.++ +.|+ ...|..|...|...+.+++|...|.++....+. ..
T Consensus 212 ~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn--~A 286 (966)
T KOG4626|consen 212 ETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN--HA 286 (966)
T ss_pred hhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc--ch
Confidence 12455666666667777777777777644 3343 346777777777777777777777777666433 56
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc-HHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCC-HHHHHHHHHHH
Q 048799 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN-RVTFLSVLNAC 198 (331)
Q Consensus 121 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~ 198 (331)
.++..+...|...|.+|-|+..|++....+|+ ..+|+.|..++...|+..+|.+.|.+.... .|+ ....+.|...|
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIY 364 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHH
Confidence 66777777777888888888888888777775 778999999999899999999999888773 344 46777888899
Q ss_pred hccCChHHHHHHHHHHHHhcCCCC-cHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCcc-HHHHHHHHHHHhcCCchhHH
Q 048799 199 SHGGLVEEGLKFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN-VVVWRTLLGACSFHGNVEMG 276 (331)
Q Consensus 199 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a 276 (331)
...|.+++|..+|....+ +.| -...++.|...|-+.|++++|...|+++....|+ ...|+.+...|-..|+++.|
T Consensus 365 ~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHH
Confidence 999999999999988875 344 3567788888899999999999999998888666 47888899999999999999
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhccc
Q 048799 277 ERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNA 322 (331)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (331)
++.+.+++..+|...+++..|+.+|...|+..+|++-++...+.+.
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 9999999999998888999999999999999999999988877543
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=1.1e-21 Score=173.94 Aligned_cols=314 Identities=8% Similarity=-0.085 Sum_probs=253.3
Q ss_pred CccchhHHhhhcC--Cc-hHHHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-CchhHHHHHHHHHhcCChhHHHHHHHHH
Q 048799 1 FLKDGSKLFDELP--ER-NLVTWNVMITGLVKWGELEYARSLFEEMPC--R-NVVSWTGIIDGYTRMNRSNGALALFRRM 74 (331)
Q Consensus 1 ~~~~A~~~~~~~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 74 (331)
++++|..+++.+. .| +...+..++.++...|+++.|...|+++.. | +...+..+...+...|++++|...++++
T Consensus 57 ~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~A 136 (656)
T PRK15174 57 ETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQA 136 (656)
T ss_pred CcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3567778877765 23 455666777778889999999999999863 3 4567888889999999999999999998
Q ss_pred HhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC--c
Q 048799 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK--N 152 (331)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~ 152 (331)
+... +.+...+..+...+...|++++|...++.+....+.+ ...+..+ ..+...|++++|...++.+....| +
T Consensus 137 l~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~--~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~ 211 (656)
T PRK15174 137 WLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR--GDMIATC-LSFLNKSRLPEDHDLARALLPFFALER 211 (656)
T ss_pred HHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC--HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcc
Confidence 5432 3456678888999999999999999999888776553 3344333 347889999999999999876643 3
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHH----HHHHHHHHHHhcCCCCcHhhHH
Q 048799 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEE----GLKFFDKMVEECEVLPDIKHYG 228 (331)
Q Consensus 153 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ 228 (331)
...+..+..++...|++++|+..++++.... +.+...+..+...+...|++++ |...++++.+. .+.+...+.
T Consensus 212 ~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~ 288 (656)
T PRK15174 212 QESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVT 288 (656)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHH
Confidence 4445556678889999999999999998754 3356777788999999999986 89999999864 234677889
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccC
Q 048799 229 CLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307 (331)
Q Consensus 229 ~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 307 (331)
.+...+.+.|++++|...++++....| +...+..+..++.+.|++++|...++++.+..|++...+..++.++...|+.
T Consensus 289 ~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~ 368 (656)
T PRK15174 289 LYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKT 368 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCH
Confidence 999999999999999999999888744 4677888889999999999999999999998998766566678889999999
Q ss_pred cchHHHHHHHhhccc
Q 048799 308 GDAERLRRVVDERNA 322 (331)
Q Consensus 308 ~~a~~~~~~~~~~~~ 322 (331)
++|...+++..+...
T Consensus 369 deA~~~l~~al~~~P 383 (656)
T PRK15174 369 SEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999998877543
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=1.3e-21 Score=173.79 Aligned_cols=315 Identities=9% Similarity=-0.028 Sum_probs=208.1
Q ss_pred CccchhHHhhhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-CchhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048799 1 FLKDGSKLFDELP--ERNLVTWNVMITGLVKWGELEYARSLFEEMPC--R-NVVSWTGIIDGYTRMNRSNGALALFRRMV 75 (331)
Q Consensus 1 ~~~~A~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 75 (331)
++++|++.|++.. .|+...|..+..+|.+.|++++|+..++...+ | +...|..+..+|...|++++|+..|..+.
T Consensus 142 ~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~ 221 (615)
T TIGR00990 142 DFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASC 221 (615)
T ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3567888888765 57777888888888889999999988888763 3 34567777777777777777765443221
Q ss_pred --------------------------------------------------------------------------------
Q 048799 76 -------------------------------------------------------------------------------- 75 (331)
Q Consensus 76 -------------------------------------------------------------------------------- 75 (331)
T Consensus 222 ~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (615)
T TIGR00990 222 IIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKS 301 (615)
T ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHH
Confidence
Q ss_pred --------------------hccCCCC-chHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcC
Q 048799 76 --------------------ACEYTEP-SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134 (331)
Q Consensus 76 --------------------~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 134 (331)
......| ....+..+...+...|++++|+..+++.++..+. ....|..+..++...|
T Consensus 302 ~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~--~~~~~~~la~~~~~~g 379 (615)
T TIGR00990 302 PESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR--VTQSYIKRASMNLELG 379 (615)
T ss_pred HHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHCC
Confidence 1100111 1223444445555666677777777766665332 4556666667777777
Q ss_pred CHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 048799 135 CIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDK 213 (331)
Q Consensus 135 ~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 213 (331)
++++|...|+++....| +...|..+...+...|++++|+..|++..... +.+...+..+...+.+.|++++|+..|++
T Consensus 380 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~ 458 (615)
T TIGR00990 380 DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRR 458 (615)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777777665544 45667777777777777777777777776632 22345566666777777777777777777
Q ss_pred HHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCcc-HH-------HHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 214 MVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN-VV-------VWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
..+. .+.+...++.+...+...|++++|.+.|+++....|+ .. .++..+..+...|++++|.++++++.+
T Consensus 459 al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 459 CKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 7653 2335667777777777888888888887776655222 11 111122223345788888888888887
Q ss_pred hhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhc
Q 048799 286 MERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320 (331)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (331)
.+|++...+..++.++.+.|++++|...+++..+.
T Consensus 537 l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 537 IDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777677778888888888888888888776553
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=1.7e-21 Score=172.70 Aligned_cols=295 Identities=10% Similarity=-0.031 Sum_probs=247.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhh
Q 048799 20 WNVMITGLVKWGELEYARSLFEEMPC---RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQ 96 (331)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (331)
...++..+.+.|++++|..+++.... .+...+..++.+....|++++|...|+++.... |.+...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHH
Confidence 33456778899999999999998762 345567777788889999999999999995532 3456678888999999
Q ss_pred cCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc-HHHHHHHHHHHHccCChHHHHHH
Q 048799 97 NGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKEAVEN 175 (331)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 175 (331)
.|++++|...++++.+..+. +..++..++.++...|++++|...++.+....|+ ...+..+ ..+...|++++|+..
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~--~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSG--NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 99999999999999988544 7788889999999999999999999988766554 3444333 347889999999999
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHH----HHHHHhhcc
Q 048799 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ----AEKVASGIP 251 (331)
Q Consensus 176 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~ 251 (331)
++.+......++......+..++...|++++|...++++.+. .+.+...+..+...+...|++++ |...|+++.
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 999877643345555566677888999999999999999874 34467888889999999999986 899999998
Q ss_pred cCCc-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 252 SEIT-NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 252 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
...| +...+..+...+...|++++|...++++.+..|+++..+..++.++.+.|++++|...++.+.+.+
T Consensus 278 ~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 278 QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 8744 578899999999999999999999999999999998899999999999999999999999988754
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=2.8e-21 Score=159.14 Aligned_cols=299 Identities=12% Similarity=0.130 Sum_probs=258.1
Q ss_pred ccchhHHhhhcC--Cch-HHHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC-chhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048799 2 LKDGSKLFDELP--ERN-LVTWNVMITGLVKWGELEYARSLFEEMPC--RN-VVSWTGIIDGYTRMNRSNGALALFRRMV 75 (331)
Q Consensus 2 ~~~A~~~~~~~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 75 (331)
+++|...+.+.. .|. ..+|+.|...+-.+|++..|+.-|++..+ |+ ..+|-.|...|-..+.+++|+..|.+..
T Consensus 200 l~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 200 LEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred cchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 455555555544 444 35688888888899999999999999874 43 3589999999999999999999999984
Q ss_pred hccCCCC-chHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc-H
Q 048799 76 ACEYTEP-SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN-L 153 (331)
Q Consensus 76 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~ 153 (331)
. ..| ....+..+...|...|+++-|+..|++.++..+. -+.+|+.|..++...|++.+|...|.+.....|+ .
T Consensus 280 ~---lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~--F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ha 354 (966)
T KOG4626|consen 280 N---LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN--FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHA 354 (966)
T ss_pred h---cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC--chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccH
Confidence 4 334 4668888999999999999999999999998655 6789999999999999999999999999888774 7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhccCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCc-HhhHHHHH
Q 048799 154 VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN-RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD-IKHYGCLI 231 (331)
Q Consensus 154 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~ 231 (331)
.+.+.|...|...|.+++|..+|..... +.|. ...++.|...|-++|++++|...|++++ .+.|+ ...++.+.
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmG 429 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMG 429 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcc
Confidence 7899999999999999999999999877 4454 4578899999999999999999999998 45775 57899999
Q ss_pred HHHHhcCCHHHHHHHHhhcccCCcc-HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcch
Q 048799 232 DMLGRAGRLEQAEKVASGIPSEITN-VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDA 310 (331)
Q Consensus 232 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 310 (331)
..|...|+...|.+.+.+++...|. ...++.|...|...|++.+|+..|+.++++.|+.+.+|..++..+--..+|.+-
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccch
Confidence 9999999999999999999988665 588999999999999999999999999999999999999998887666666653
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=5.5e-20 Score=173.55 Aligned_cols=314 Identities=10% Similarity=0.012 Sum_probs=202.1
Q ss_pred ccchhHHhhhcC--Cc-hHHHHHHHHHHHHHcCCHHHHHHHHhhCCC--CCc---hhHH------------HHHHHHHhc
Q 048799 2 LKDGSKLFDELP--ER-NLVTWNVMITGLVKWGELEYARSLFEEMPC--RNV---VSWT------------GIIDGYTRM 61 (331)
Q Consensus 2 ~~~A~~~~~~~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~------------~l~~~~~~~ 61 (331)
+++|+..|++.. .| +..++..+..++.+.|++++|+..|++..+ |+. ..|. .+...+.+.
T Consensus 285 ~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~ 364 (1157)
T PRK11447 285 GGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKA 364 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHC
Confidence 467778887765 34 677888888888888999988888887653 321 1121 223456778
Q ss_pred CChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHH---------------
Q 048799 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL--------------- 126 (331)
Q Consensus 62 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------- 126 (331)
|++++|...|++++... +.+...+..+..++...|++++|++.|+++++..+. +..++..+
T Consensus 365 g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~--~~~a~~~L~~l~~~~~~~~A~~~ 440 (1157)
T PRK11447 365 NNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG--NTNAVRGLANLYRQQSPEKALAF 440 (1157)
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888888888885432 244566777888888888888888888888876543 33333222
Q ss_pred ---------------------------HHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHH
Q 048799 127 ---------------------------IDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFER 178 (331)
Q Consensus 127 ---------------------------~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 178 (331)
...+...|++++|.+.|+++....| +...+..+...|.+.|++++|+..+++
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRR 520 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2334456777888888877776666 455666777778888888888888887
Q ss_pred HHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh-------------------------------------c-CC
Q 048799 179 MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE-------------------------------------C-EV 220 (331)
Q Consensus 179 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------------------------~-~~ 220 (331)
+.+... .+...+..+...+...++.++|...++.+... . ..
T Consensus 521 al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~ 599 (1157)
T PRK11447 521 LAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ 599 (1157)
T ss_pred HHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 765321 12222222222233344444444433322100 0 01
Q ss_pred CCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHH
Q 048799 221 LPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299 (331)
Q Consensus 221 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 299 (331)
+++...+..+...+.+.|++++|...|+++... +.+...+..++..+...|++++|++.++.+.+..|+++..+..++.
T Consensus 600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~ 679 (1157)
T PRK11447 600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVAL 679 (1157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 234445556666677777777777777777666 3346667777777777777777777777777666776666667777
Q ss_pred HHhhhccCcchHHHHHHHhhc
Q 048799 300 ILAGVWRYGDAERLRRVVDER 320 (331)
Q Consensus 300 ~~~~~g~~~~a~~~~~~~~~~ 320 (331)
++...|++++|.++++.+.+.
T Consensus 680 ~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 680 AWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHhhh
Confidence 777777777777777776654
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=3.2e-19 Score=158.54 Aligned_cols=298 Identities=10% Similarity=-0.053 Sum_probs=240.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCC--CCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhh
Q 048799 19 TWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQ 96 (331)
Q Consensus 19 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (331)
.+......+.+.|++++|+..|++.. .|+...|..+..+|.+.|++++|+..+++.+... +.+...+..+..++..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 45567788999999999999999976 5788889999999999999999999999985422 3456688889999999
Q ss_pred cCchhHHHHHHhhhhhcCCC----------------------------cchhHHHHHHHH--------------------
Q 048799 97 NGDVRNCQLIHGYGEKRGFN----------------------------AFHIHVSNCLID-------------------- 128 (331)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~----------------------------~~~~~~~~~l~~-------------------- 128 (331)
.|++++|+..+..+...+.. |.+...+..+..
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 99999998766544322110 000000000000
Q ss_pred ----------HH------HhcCCHhHHHHHHHHhhhc---CC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCC-
Q 048799 129 ----------TY------AKCGCIFSALKLFEDISVE---RK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN- 187 (331)
Q Consensus 129 ----------~~------~~~g~~~~A~~~~~~~~~~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~- 187 (331)
.. ...+++++|.+.|+++... .| ....|+.+...+...|++++|+..|++.... .|+
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~ 364 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRV 364 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCc
Confidence 00 1235788999999988764 23 4567888888999999999999999999874 454
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHH
Q 048799 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGA 266 (331)
Q Consensus 188 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~ 266 (331)
...|..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|...|+++....| +...+..+..+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHH
Confidence 567888888999999999999999999874 234678899999999999999999999999988844 56778888999
Q ss_pred HhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhccc
Q 048799 267 CSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNA 322 (331)
Q Consensus 267 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (331)
+.+.|++++|+..++++++..|+++..+..++.++...|++++|.+.+++..+...
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999877543
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=4.9e-19 Score=167.21 Aligned_cols=308 Identities=11% Similarity=0.061 Sum_probs=207.5
Q ss_pred ccchhHHhhhcC---CchHHHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-CchhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048799 2 LKDGSKLFDELP---ERNLVTWNVMITGLVKWGELEYARSLFEEMPC--R-NVVSWTGIIDGYTRMNRSNGALALFRRMV 75 (331)
Q Consensus 2 ~~~A~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 75 (331)
+++|++.|++.. +.+...+..+..++...|++++|++.|++..+ | +...+..+...+. .++.++|+..++.+.
T Consensus 367 ~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~ 445 (1157)
T PRK11447 367 LAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLS 445 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCC
Confidence 456777887765 33566777888889999999999999988763 3 3344544544443 234555555554431
Q ss_pred hccCC-------CCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 048799 76 ACEYT-------EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148 (331)
Q Consensus 76 ~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 148 (331)
..... ......+..+...+...|++++|++.++++++..+. +..++..+...|.+.|++++|...|+++..
T Consensus 446 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~--~~~~~~~LA~~~~~~G~~~~A~~~l~~al~ 523 (1157)
T PRK11447 446 ASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG--SVWLTYRLAQDLRQAGQRSQADALMRRLAQ 523 (1157)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 10000 000112233444455556666666666666655433 445555566666666666666666665554
Q ss_pred cCC-cHHHHHH--------------------------------------------HHHHHHccCChHHHHHHHHHHHhcc
Q 048799 149 ERK-NLVSWTS--------------------------------------------IISGFAMHGMGKEAVENFERMQKVV 183 (331)
Q Consensus 149 ~~~-~~~~~~~--------------------------------------------l~~~~~~~~~~~~a~~~~~~m~~~~ 183 (331)
..| +...+.. +...+...|+.++|+++++.
T Consensus 524 ~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~----- 598 (1157)
T PRK11447 524 QKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ----- 598 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----
Confidence 433 2222222 23344555566666655541
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHH
Q 048799 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRT 262 (331)
Q Consensus 184 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 262 (331)
.+++...+..+...+.+.|++++|...|+++.+. -+.+...+..++..|...|++++|.+.++.+....| +...+..
T Consensus 599 ~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~ 676 (1157)
T PRK11447 599 QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRR 676 (1157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHH
Confidence 2345566777888999999999999999999975 244788899999999999999999999999887744 5677778
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHhhcCCCc------cHHHHHHHHhhhccCcchHHHHHHHhh
Q 048799 263 LLGACSFHGNVEMGERVTRKILEMERGYGG------DYVLMYNILAGVWRYGDAERLRRVVDE 319 (331)
Q Consensus 263 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (331)
+..++...|++++|.++++++.+..|+++. .+..++.++...|++++|+..++....
T Consensus 677 la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 677 VALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888999999999999999999987665543 455678899999999999999988854
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=2.6e-18 Score=155.59 Aligned_cols=313 Identities=11% Similarity=0.043 Sum_probs=190.3
Q ss_pred ccchhHHhhhcC---CchHHHHHHHHHHHHHcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048799 2 LKDGSKLFDELP---ERNLVTWNVMITGLVKWGELEYARSLFEEMP---CRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75 (331)
Q Consensus 2 ~~~A~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 75 (331)
.++|+++|.+.. +.+...+..+...+.+.|++++|..+|++.. ..+...+..++.++...|++++|+..+++++
T Consensus 31 ~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l 110 (765)
T PRK10049 31 DAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLV 110 (765)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456777777755 2355568888888888888888888888854 2345567777778888888888888888884
Q ss_pred hccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHH-----------
Q 048799 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFE----------- 144 (331)
Q Consensus 76 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~----------- 144 (331)
... +.+.. +..+..++...|+.++|+..++++.+..+. +..++..++.++...|..++|+..++
T Consensus 111 ~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~--~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~ 185 (765)
T PRK10049 111 SGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ--TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRD 185 (765)
T ss_pred HhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHH
Confidence 432 23444 777777888888888888888888887554 55555556666655555554443333
Q ss_pred -----------------------------------Hhhhc---CCcHH-HHH----HHHHHHHccCChHHHHHHHHHHHh
Q 048799 145 -----------------------------------DISVE---RKNLV-SWT----SIISGFAMHGMGKEAVENFERMQK 181 (331)
Q Consensus 145 -----------------------------------~~~~~---~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~m~~ 181 (331)
.+... .|+.. .+. ..+.++...|++++|+..|+++.+
T Consensus 186 l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~ 265 (765)
T PRK10049 186 LEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKA 265 (765)
T ss_pred HHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 22211 11110 010 112233455777777777777766
Q ss_pred ccCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCC--cHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc---
Q 048799 182 VVLK-PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP--DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT--- 255 (331)
Q Consensus 182 ~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--- 255 (331)
.+.+ |+. ....+..+|...|++++|+.+|+++.+.....+ .......+..++.+.|++++|.++++.+....|
T Consensus 266 ~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~ 344 (765)
T PRK10049 266 EGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFL 344 (765)
T ss_pred cCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceE
Confidence 5422 322 112245566677777777777777654311110 123344455566667777777777666655422
Q ss_pred ----------c---HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhc
Q 048799 256 ----------N---VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320 (331)
Q Consensus 256 ----------~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (331)
+ ...+..+...+...|+.++|+++++++.+..|+++..+..++.++...|+.++|++.+++..+.
T Consensus 345 ~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 345 RLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred eecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1 1233445555666666666666666666666666666666666666666666666666665553
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=6.6e-18 Score=152.99 Aligned_cols=318 Identities=11% Similarity=-0.017 Sum_probs=236.0
Q ss_pred CccchhHHhhhcC---CchHHHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-CchhHHHHHHHHHhcCChhHHHHHHHHH
Q 048799 1 FLKDGSKLFDELP---ERNLVTWNVMITGLVKWGELEYARSLFEEMPC--R-NVVSWTGIIDGYTRMNRSNGALALFRRM 74 (331)
Q Consensus 1 ~~~~A~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 74 (331)
++++|.++|++.. +.+...+..++.++...|++++|+..+++... | +.. +..+..++...|+.++|+..++++
T Consensus 64 ~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~a 142 (765)
T PRK10049 64 QWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQA 142 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3567888999854 44677788888999999999999999998762 3 445 888888999999999999999998
Q ss_pred HhccCCCCchHHHHHHHHHHhhcCchhHHH----------------------------------------------HHHh
Q 048799 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQ----------------------------------------------LIHG 108 (331)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~----------------------------------------------~~~~ 108 (331)
.... +.+...+..+..++...+..+.|+ +.++
T Consensus 143 l~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 143 LPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred HHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 5532 233444455555555555554444 3444
Q ss_pred hhhhc-CCCcchhHH----HHHHHHHHHhcCCHhHHHHHHHHhhhcCCc-H-HHHHHHHHHHHccCChHHHHHHHHHHHh
Q 048799 109 YGEKR-GFNAFHIHV----SNCLIDTYAKCGCIFSALKLFEDISVERKN-L-VSWTSIISGFAMHGMGKEAVENFERMQK 181 (331)
Q Consensus 109 ~~~~~-~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 181 (331)
.+.+. ...|.+... ....+..+...|++++|+..|+++....++ + ..-..+..+|...|++++|+..|+++.+
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 44432 111211111 111133456779999999999999876432 1 1222356789999999999999999876
Q ss_pred ccCCC---CHHHHHHHHHHHhccCChHHHHHHHHHHHHhcC----------CCCc---HhhHHHHHHHHHhcCCHHHHHH
Q 048799 182 VVLKP---NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECE----------VLPD---IKHYGCLIDMLGRAGRLEQAEK 245 (331)
Q Consensus 182 ~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~ 245 (331)
..... .......+..++...|++++|..+++.+.+... -.|+ ...+..+...+...|++++|.+
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 43111 134566677788999999999999999986410 0122 2345667788999999999999
Q ss_pred HHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 246 VASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 246 ~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
+++++... +.+...+..+...+...|++++|++.++++++..|++...+...+..+.+.|++++|+.+++.+.+..
T Consensus 381 ~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 381 RARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999887 44678899999999999999999999999999999999999999999999999999999999997754
No 21
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.84 E-value=7.4e-21 Score=152.78 Aligned_cols=261 Identities=17% Similarity=0.084 Sum_probs=109.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHh
Q 048799 53 GIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK 132 (331)
Q Consensus 53 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (331)
.+...+.+.|++++|++++++.......+.+...|..+.......++.+.|.+.++++...+.. ++..+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~--~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA--NPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccc-cc
Confidence 4566778888999999988654232212334445555666677788899999999988877554 56667777776 68
Q ss_pred cCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHhccCChHHHHHHH
Q 048799 133 CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFLSVLNACSHGGLVEEGLKFF 211 (331)
Q Consensus 133 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 211 (331)
.+++++|..+++..-+..+++..+..++..+...++++++.++++++.... .+++...|..+...+.+.|+.++|.+.+
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 889999998888776656677777888888888999999999998876533 3456777888888888999999999999
Q ss_pred HHHHHhcCCCC-cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcC
Q 048799 212 DKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 289 (331)
Q Consensus 212 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 289 (331)
+++.+. .| |......++..+...|+.+++.+++...... +.++..+..+..++...|++++|...++++.+.+|+
T Consensus 170 ~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 998875 44 5778888888898999999888888777665 345677888889999999999999999999998999
Q ss_pred CCccHHHHHHHHhhhccCcchHHHHHHHhh
Q 048799 290 YGGDYVLMYNILAGVWRYGDAERLRRVVDE 319 (331)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (331)
++.....++.++...|+.++|.++.++..+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 988889999999999999999988876543
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.82 E-value=1.9e-16 Score=144.31 Aligned_cols=298 Identities=10% Similarity=-0.035 Sum_probs=215.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC----chhHHHHHHHHHhcCC---hhHHHHH----------------
Q 048799 16 NLVTWNVMITGLVKWGELEYARSLFEEMPC--RN----VVSWTGIIDGYTRMNR---SNGALAL---------------- 70 (331)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~---~~~a~~~---------------- 70 (331)
+....-.+.-...+.|+.++|.++|+.... ++ ...-.-|+..|.+.+. ..++..+
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 455555555667788999999999888763 11 2233356666666655 3333222
Q ss_pred ------HHHHHhccCC-CC--chHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHH
Q 048799 71 ------FRRMVACEYT-EP--SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141 (331)
Q Consensus 71 ------~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 141 (331)
........+. ++ +...|..+..++.. ++.++|...+.+.....+ +......+...+...|++++|..
T Consensus 455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~P---d~~~~L~lA~al~~~Gr~eeAi~ 530 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQP---DAWQHRAVAYQAYQVEDYATALA 530 (987)
T ss_pred hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCC---chHHHHHHHHHHHHCCCHHHHHH
Confidence 2222111112 33 56677777777766 788888888888777643 33333345555678899999999
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCC
Q 048799 142 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVL 221 (331)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 221 (331)
.|+++....|+...+..+..++.+.|+.++|...+++..+.. +++...+..+.......|++++|...+++..+. .
T Consensus 531 ~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~ 606 (987)
T PRK09782 531 AWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---A 606 (987)
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---C
Confidence 999887666665666777778888899999999998888754 223333333444445669999999999998854 5
Q ss_pred CcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHH
Q 048799 222 PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300 (331)
Q Consensus 222 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 300 (331)
|+...+..+..++.+.|++++|...++++....| +...+..+..++...|++++|+..++++.+..|+++..+..++.+
T Consensus 607 P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~a 686 (987)
T PRK09782 607 PSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYV 686 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 6778888888889999999999999999888844 567788888888899999999999999999999988889999999
Q ss_pred HhhhccCcchHHHHHHHhhcc
Q 048799 301 LAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 301 ~~~~g~~~~a~~~~~~~~~~~ 321 (331)
+...|++++|+..+++..+..
T Consensus 687 l~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 687 NQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999998887644
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=3.6e-16 Score=142.56 Aligned_cols=265 Identities=9% Similarity=0.005 Sum_probs=217.9
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHH
Q 048799 47 NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126 (331)
Q Consensus 47 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 126 (331)
+...|..+..++.. +++++|+..+.+.... .|+......+...+...|++++|...++++....+ +...+..+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p---~~~a~~~l 548 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDM---SNEDLLAA 548 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC---CcHHHHHH
Confidence 45677888887776 8999999988887442 35655555556666789999999999999866532 33445677
Q ss_pred HHHHHhcCCHhHHHHHHHHhhhcCCc-HHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChH
Q 048799 127 IDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVE 205 (331)
Q Consensus 127 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 205 (331)
+.++.+.|+.++|...|++.....|+ ...+..+.......|++++|+..+++..+ ..|+...+..+..++.+.|+.+
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~d 626 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVP 626 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHH
Confidence 88899999999999999999877654 33344444455567999999999999987 4577888999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 048799 206 EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMGERVTRKIL 284 (331)
Q Consensus 206 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 284 (331)
+|...+++..+. .+.+...+..+...+...|++++|...++++....| ++..+..+..++...|++++|+..++++.
T Consensus 627 eA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 627 AAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999874 234677888888999999999999999999988844 67889999999999999999999999999
Q ss_pred HhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhccc
Q 048799 285 EMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNA 322 (331)
Q Consensus 285 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (331)
+..|+...+....+....+..+++.+.+.+++-...++
T Consensus 705 ~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 705 DDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred hcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99999989999999999999999999988887665544
No 24
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.80 E-value=1.3e-16 Score=137.02 Aligned_cols=324 Identities=14% Similarity=0.098 Sum_probs=191.0
Q ss_pred ccchhHHhhhcC---CchHHHHHHHHHHHHHcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048799 2 LKDGSKLFDELP---ERNLVTWNVMITGLVKWGELEYARSLFEEMP---CRNVVSWTGIIDGYTRMNRSNGALALFRRMV 75 (331)
Q Consensus 2 ~~~A~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 75 (331)
+++|.+++.++. +.+...|..|...|-+.|+.+++...+-... ..|...|-.+.....+.|.+++|.-.|.+++
T Consensus 155 ~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI 234 (895)
T KOG2076|consen 155 LEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAI 234 (895)
T ss_pred HHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344555555443 2234445555555555555555544433221 2233444555555555555555555555542
Q ss_pred hccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHH----HHHHHHHhcCCHhHHHHHHHHhhhc--
Q 048799 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSN----CLIDTYAKCGCIFSALKLFEDISVE-- 149 (331)
Q Consensus 76 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~-- 149 (331)
... +++...+-.-...|-+.|+...|..-|.++....++. +..-+. ..++.+...++-+.|.+.++.....
T Consensus 235 ~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~-d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 235 QAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV-DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred hcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch-hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 221 2333333333444445555555555555555443311 221111 1233344444445555555544432
Q ss_pred -CCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCC---------------------------CHHHHHHHHHHHhcc
Q 048799 150 -RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP---------------------------NRVTFLSVLNACSHG 201 (331)
Q Consensus 150 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---------------------------~~~~~~~l~~~~~~~ 201 (331)
..+...++.++..|.+...++.+......+......+ +... ..+.-++.+.
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L 390 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHL 390 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcc
Confidence 1233445566666666666666666665554411111 1111 1222334444
Q ss_pred CChHHHHHHHHHHHHhcCCCC--cHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc--cHHHHHHHHHHHhcCCchhHHH
Q 048799 202 GLVEEGLKFFDKMVEECEVLP--DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT--NVVVWRTLLGACSFHGNVEMGE 277 (331)
Q Consensus 202 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~ 277 (331)
+..+....+.....+. .+.| +...|.-+..+|...|++.+|..+|..+....+ +...|..+..+|...|.+++|.
T Consensus 391 ~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 391 KERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred cccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 4455555555555554 5334 567888999999999999999999999998833 4679999999999999999999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhccccCCCCCCC
Q 048799 278 RVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSL 330 (331)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~sw 330 (331)
+.|++++...|++..+...|...+.+.|+.++|.+.++.+..-+....++.+|
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999999999999999999999999999886433333355555
No 25
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=4.1e-17 Score=135.86 Aligned_cols=284 Identities=11% Similarity=-0.028 Sum_probs=227.6
Q ss_pred cCCHHHHHHHHhhCCC--CCc-hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCC-chHHHHHHHHHHhhcCchhHHHH
Q 048799 30 WGELEYARSLFEEMPC--RNV-VSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP-SEITILAVFPAIWQNGDVRNCQL 105 (331)
Q Consensus 30 ~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 105 (331)
.-+..+|...|..++. +|. .....+.++|...+++++|..+|+.+.+...... +..+|.+.+--+-+ .-+---
T Consensus 332 ~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~ 408 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSY 408 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHH
Confidence 3456789999998663 333 4566788999999999999999999955444332 45677777665422 222222
Q ss_pred HHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccC
Q 048799 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVL 184 (331)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 184 (331)
+-+.+++.. |..+.+|.+++++|.-+++.+.|++.|+++...+| ...+|+.+..-+.....+|.|...|+..+. +
T Consensus 409 Laq~Li~~~--~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~ 484 (638)
T KOG1126|consen 409 LAQDLIDTD--PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--V 484 (638)
T ss_pred HHHHHHhhC--CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--C
Confidence 334444443 33789999999999999999999999999998887 689999999999999999999999998765 3
Q ss_pred CCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCC-cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHH
Q 048799 185 KPNR-VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWR 261 (331)
Q Consensus 185 ~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~ 261 (331)
.|.. ..|.-+...|.++++++.|+-.|+++.+ +.| +......++..+.+.|+.++|+++++++... +.++..--
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 3332 3445567789999999999999999985 455 6777788888999999999999999999877 44666666
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhcccc
Q 048799 262 TLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNAL 323 (331)
Q Consensus 262 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (331)
..+..+...+++++|+..++++.+..|+....|..++..|.+.|+.+.|+.-|.-+.+...+
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 67788889999999999999999999999999999999999999999999998887765443
No 26
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.78 E-value=1.2e-15 Score=128.18 Aligned_cols=279 Identities=11% Similarity=0.055 Sum_probs=215.7
Q ss_pred HcCCHHHHHHHHhhCCCC--Cchh-HHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHH--HHHHHHhhcCchhHH
Q 048799 29 KWGELEYARSLFEEMPCR--NVVS-WTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL--AVFPAIWQNGDVRNC 103 (331)
Q Consensus 29 ~~g~~~~A~~~~~~~~~~--~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 103 (331)
-.|+++.|.+.+....+. ++.. |.....+..+.|+++.|...+.++.+ ..|+..... .....+...|+++.|
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~---~~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE---LADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHCCCHHHH
Confidence 369999999999876642 2333 33334455899999999999999943 345543322 346788899999999
Q ss_pred HHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHH--------HHHHHHHHHHccCChHHHHH
Q 048799 104 QLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLV--------SWTSIISGFAMHGMGKEAVE 174 (331)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~--------~~~~l~~~~~~~~~~~~a~~ 174 (331)
...++++.+..+. ++.+...+...|.+.|++++|.+++..+.+..+ +.. +|..++.......+.+...+
T Consensus 173 l~~l~~~~~~~P~--~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 173 RHGVDKLLEVAPR--HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHhcCCC--CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999998755 788889999999999999999999999987632 121 33344444444555666666
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCC
Q 048799 175 NFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254 (331)
Q Consensus 175 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 254 (331)
+++.+-.. .+.+......+...+...|+.++|.+.+++..+. +|+.... ++.+....++.+++.+..+...+..
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC
Confidence 66665332 3457778888999999999999999999998864 4555332 3334456699999999999988885
Q ss_pred c-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhh
Q 048799 255 T-NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319 (331)
Q Consensus 255 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (331)
| |+..+..+...+.+.|++++|.+.|+++.+..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5 56778889999999999999999999999999987 7788999999999999999999987654
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=2.6e-15 Score=134.44 Aligned_cols=314 Identities=10% Similarity=0.040 Sum_probs=191.1
Q ss_pred ccchhHHhhhcCCchH-HHHHHH--HHHHHHcCCHHHHHHHHhhCCC--C-CchhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048799 2 LKDGSKLFDELPERNL-VTWNVM--ITGLVKWGELEYARSLFEEMPC--R-NVVSWTGIIDGYTRMNRSNGALALFRRMV 75 (331)
Q Consensus 2 ~~~A~~~~~~~~~p~~-~~~~~l--~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 75 (331)
.++|+..+++...|+. ..+..+ ...+...|++++|+++|+++.+ | +...+..++..+...++.++|++.++++.
T Consensus 84 ~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~ 163 (822)
T PRK14574 84 DQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA 163 (822)
T ss_pred cHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence 3456666666554422 222222 4456666777777777776652 2 33445555666666677777777776663
Q ss_pred hccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHH-----------
Q 048799 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFE----------- 144 (331)
Q Consensus 76 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~----------- 144 (331)
. ..|+...+..++..+...++..+|++.++++++..+. +...+..+..++.+.|-...|.++..
T Consensus 164 ~---~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~--n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~ 238 (822)
T PRK14574 164 E---RDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT--SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHY 238 (822)
T ss_pred c---cCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHH
Confidence 2 2344444433333333345554577777777766443 45555555555555443333333222
Q ss_pred -------------------------------------Hhhh---cCCcH-HHH----HHHHHHHHccCChHHHHHHHHHH
Q 048799 145 -------------------------------------DISV---ERKNL-VSW----TSIISGFAMHGMGKEAVENFERM 179 (331)
Q Consensus 145 -------------------------------------~~~~---~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~m 179 (331)
.+.. ..|.. ..| .-.+-++...+++.++++.|+.|
T Consensus 239 ~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l 318 (822)
T PRK14574 239 RQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM 318 (822)
T ss_pred HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 1111 01211 111 12234566777888888888888
Q ss_pred HhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcC----CCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc
Q 048799 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECE----VLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255 (331)
Q Consensus 180 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 255 (331)
...+.+....+-..+..+|...+.+++|+.++..+....+ .+++......|.-+|...+++++|..+++.+....|
T Consensus 319 ~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 319 EAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 8777655556777788888888888888888888765411 122344456777888888888888888888776412
Q ss_pred -------------c---HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhh
Q 048799 256 -------------N---VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319 (331)
Q Consensus 256 -------------~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (331)
+ ......++..+.-.|+..+|++.++++....|.++.....++.++...|...+|+..++....
T Consensus 399 ~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 399 YQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred cEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 2 123344566677788888888888888888888888888888888888888888888866544
Q ss_pred c
Q 048799 320 R 320 (331)
Q Consensus 320 ~ 320 (331)
.
T Consensus 479 l 479 (822)
T PRK14574 479 L 479 (822)
T ss_pred h
Confidence 3
No 28
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.77 E-value=3.3e-15 Score=114.38 Aligned_cols=279 Identities=14% Similarity=0.086 Sum_probs=184.9
Q ss_pred ccchhHHhhhcCCchHHH---HHHHHHHHHHcCCHHHHHHHHhhCC-CCCch------hHHHHHHHHHhcCChhHHHHHH
Q 048799 2 LKDGSKLFDELPERNLVT---WNVMITGLVKWGELEYARSLFEEMP-CRNVV------SWTGIIDGYTRMNRSNGALALF 71 (331)
Q Consensus 2 ~~~A~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~------~~~~l~~~~~~~~~~~~a~~~~ 71 (331)
.++|.++|-+|.+-|..| --+|.+.|.+.|..|+|+++-..+. +||.. +...|..-|...|-+++|..+|
T Consensus 51 ~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f 130 (389)
T COG2956 51 PDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIF 130 (389)
T ss_pred cchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 467888888877544443 4467777888888888888877765 44432 3445666677888888888888
Q ss_pred HHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcch---hHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 048799 72 RRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH---IHVSNCLIDTYAKCGCIFSALKLFEDISV 148 (331)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 148 (331)
..++. .+ .--......|+..|-...+|++|+++-+++.+.+..+.. ...|.-|...+....+.+.|..++.++.+
T Consensus 131 ~~L~d-e~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 131 NQLVD-EG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ 208 (389)
T ss_pred HHHhc-ch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 87732 21 123446667788888888888888888877777665422 23455555666667778888888888777
Q ss_pred cCCcH-HHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhH
Q 048799 149 ERKNL-VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY 227 (331)
Q Consensus 149 ~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 227 (331)
.+|+. .+--.+.......|++++|++.++...+.+..--..+...|..+|...|+.++...++..+.+. .+....-
T Consensus 209 a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~ 285 (389)
T COG2956 209 ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAE 285 (389)
T ss_pred hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHH
Confidence 66643 3444555677778888888888888777664445566777778888888888888888777754 3444444
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhc---CCchhHHHHHHHHHHH
Q 048799 228 GCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF---HGNVEMGERVTRKILE 285 (331)
Q Consensus 228 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 285 (331)
..+.+.-....-.+.|...+.+-....|+...+..++..... .|...+....+++|..
T Consensus 286 l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 286 LMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 455554444455566666555555555887777777776543 3445556666666664
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.76 E-value=9.9e-15 Score=122.65 Aligned_cols=279 Identities=11% Similarity=-0.034 Sum_probs=215.1
Q ss_pred CccchhHHhhhcCC--chHHHHHHH-HHHHHHcCCHHHHHHHHhhCCC--CCchhHH--HHHHHHHhcCChhHHHHHHHH
Q 048799 1 FLKDGSKLFDELPE--RNLVTWNVM-ITGLVKWGELEYARSLFEEMPC--RNVVSWT--GIIDGYTRMNRSNGALALFRR 73 (331)
Q Consensus 1 ~~~~A~~~~~~~~~--p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~--~l~~~~~~~~~~~~a~~~~~~ 73 (331)
+++.|.+.+....+ +++..+..+ ..+..+.|+++.|...|.++.+ |+..... .....+...|++++|...+++
T Consensus 99 d~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~ 178 (398)
T PRK10747 99 DYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDK 178 (398)
T ss_pred CHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34567777776553 233333333 4555899999999999999874 4443332 335678999999999999999
Q ss_pred HHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchh------HHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 048799 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI------HVSNCLIDTYAKCGCIFSALKLFEDIS 147 (331)
Q Consensus 74 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 147 (331)
+.... |-++.....+...+.+.|++++|.+++..+.+.+..++.. .+|..++.......+.+...++++...
T Consensus 179 ~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp 256 (398)
T PRK10747 179 LLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQS 256 (398)
T ss_pred HHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence 94432 3456788889999999999999999999999887653121 233344444445556677777787776
Q ss_pred hcC-CcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhh
Q 048799 148 VER-KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH 226 (331)
Q Consensus 148 ~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 226 (331)
... .++.....+...+...|+.++|.+++++..+ .+|+.... ++.+....++.+++.+..+...+. .+-|...
T Consensus 257 ~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l 330 (398)
T PRK10747 257 RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLL 330 (398)
T ss_pred HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHH
Confidence 553 4677888999999999999999999999887 34565322 334445669999999999999874 3446778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh
Q 048799 227 YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME 287 (331)
Q Consensus 227 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 287 (331)
+..+...+.+.|++++|.+.|+.+....|+...+..+..++.+.|+.++|.+++++...+.
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 8899999999999999999999999888999999999999999999999999999998743
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=9.4e-18 Score=134.82 Aligned_cols=254 Identities=13% Similarity=0.148 Sum_probs=113.2
Q ss_pred HHHHHHHHcCCHHHHHHHHhhC-CC----CCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhh
Q 048799 22 VMITGLVKWGELEYARSLFEEM-PC----RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQ 96 (331)
Q Consensus 22 ~l~~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (331)
.+...+.+.|++++|++++++. .. .|...|..+.......++++.|...++++...+. -++..+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~--~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK--ANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccc-cc
Confidence 5688899999999999999643 22 3455666777778889999999999999944322 245566666666 78
Q ss_pred cCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc---CCcHHHHHHHHHHHHccCChHHHH
Q 048799 97 NGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE---RKNLVSWTSIISGFAMHGMGKEAV 173 (331)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 173 (331)
.+++++|.+++....+.. + ++..+..++..+...++++++..+++.+... +.+...|..+...+.+.|+.++|+
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--G-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred cccccccccccccccccc--c-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999998877654 3 5566778889999999999999999997654 346778888999999999999999
Q ss_pred HHHHHHHhccCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhccc
Q 048799 174 ENFERMQKVVLKP-NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252 (331)
Q Consensus 174 ~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 252 (331)
+.+++..+. .| |......++..+...|+.+++.+++....+. .+.++..+..+..+|...|+.++|..++++...
T Consensus 167 ~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 167 RDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 999999885 36 4677888999999999999999999998875 255777888999999999999999999999887
Q ss_pred C-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 253 E-ITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 253 ~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
. +.|+.....+..++...|+.++|.++.+++.+
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 6 44788889999999999999999999988765
No 31
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=2.7e-16 Score=131.09 Aligned_cols=276 Identities=13% Similarity=0.065 Sum_probs=223.5
Q ss_pred cchhHHhhhcC--CchH-HHHHHHHHHHHHcCCHHHHHHHHhhCCC------CCchhHHHHHHHHHhcCChhHHHHHHHH
Q 048799 3 KDGSKLFDELP--ERNL-VTWNVMITGLVKWGELEYARSLFEEMPC------RNVVSWTGIIDGYTRMNRSNGALALFRR 73 (331)
Q Consensus 3 ~~A~~~~~~~~--~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 73 (331)
++|+.+|..++ .+|. -....+..+|...+++++|.++|+.+.+ .+...|.+.+..+-+ +-++..+.+
T Consensus 336 ~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq 411 (638)
T KOG1126|consen 336 REALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQ 411 (638)
T ss_pred HHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHH
Confidence 57888888865 3444 3445677999999999999999999873 356788888876533 223333333
Q ss_pred HHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-c
Q 048799 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-N 152 (331)
Q Consensus 74 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~ 152 (331)
-+.. -.+..+.+|.++.++|.-+++.+.|++.|+++++..+. ...+|+.+..-+.....+|.|...|+.+....| +
T Consensus 412 ~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~--faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh 488 (638)
T KOG1126|consen 412 DLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR--FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH 488 (638)
T ss_pred HHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc--cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh
Confidence 2121 13456789999999999999999999999999998554 788999999999999999999999999987655 4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhccCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCC-cHhhHHHH
Q 048799 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP-NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP-DIKHYGCL 230 (331)
Q Consensus 153 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 230 (331)
-.+|..+...|.+.++++.|+-.|+++.+- .| +......+...+.+.|+.++|+++++++... .| |+..--..
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l---d~kn~l~~~~~ 563 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL---DPKNPLCKYHR 563 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc---CCCCchhHHHH
Confidence 567888889999999999999999999884 45 4556667777888999999999999999853 33 55555666
Q ss_pred HHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCC
Q 048799 231 IDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 290 (331)
Q Consensus 231 ~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 290 (331)
+..+...++.++|++.++++....| +...+..++..|.+.|+.+.|..-|.-+..++|.-
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 7778899999999999999998855 46788888999999999999999999999988865
No 32
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.75 E-value=1.1e-14 Score=122.94 Aligned_cols=283 Identities=10% Similarity=0.039 Sum_probs=201.5
Q ss_pred HHcCCHHHHHHHHhhCCC--CCc-hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCch--HHHHHHHHHHhhcCchhH
Q 048799 28 VKWGELEYARSLFEEMPC--RNV-VSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSE--ITILAVFPAIWQNGDVRN 102 (331)
Q Consensus 28 ~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 102 (331)
...|+++.|.+.+.+..+ |+. ..+-....++.+.|+++.|.+.+.+..+ . .|+. .........+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~-~--~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAE-L--AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h--CCcCchHHHHHHHHHHHHCCCHHH
Confidence 568999999999988763 333 2344445677888999999999999843 2 2343 344445778888999999
Q ss_pred HHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC-CcHHHHH----HHHHHHHccCChHHHHHHHH
Q 048799 103 CQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER-KNLVSWT----SIISGFAMHGMGKEAVENFE 177 (331)
Q Consensus 103 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~----~l~~~~~~~~~~~~a~~~~~ 177 (331)
|...++.+.+..+. ++.+...+...+...|++++|.+.+..+.+.. .+...+. .........+..++..+.+.
T Consensus 172 Al~~l~~l~~~~P~--~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMAPR--HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999998655 67788889999999999999999999988663 2333231 11112223333344444555
Q ss_pred HHHhccC---CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhh---HHHHHHHHHhcCCHHHHHHHHhhcc
Q 048799 178 RMQKVVL---KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH---YGCLIDMLGRAGRLEQAEKVASGIP 251 (331)
Q Consensus 178 ~m~~~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~ 251 (331)
.+..... +.+...+..+...+...|+.++|.+.+++..+. .|+... .....-.....++.+.+.+.++...
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 5544321 137778888888999999999999999999875 333331 1112222344578888888888887
Q ss_pred cCCc-cH--HHHHHHHHHHhcCCchhHHHHHHHH--HHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhh
Q 048799 252 SEIT-NV--VVWRTLLGACSFHGNVEMGERVTRK--ILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319 (331)
Q Consensus 252 ~~~p-~~--~~~~~l~~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (331)
+..| ++ ....++...+.+.|++++|.+.|+. ..+..|++ ..+..++..+.+.|+.++|.+++++-..
T Consensus 327 k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 327 KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7744 34 5667888999999999999999994 55567776 5577999999999999999999887543
No 33
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=5e-14 Score=126.31 Aligned_cols=319 Identities=12% Similarity=-0.016 Sum_probs=236.2
Q ss_pred CccchhHHhhhcC--Cc-hHHHHHHHHHHHHHcCCHHHHHHHHhhCCC--CCchhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048799 1 FLKDGSKLFDELP--ER-NLVTWNVMITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYTRMNRSNGALALFRRMV 75 (331)
Q Consensus 1 ~~~~A~~~~~~~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 75 (331)
++++|+++|+++. .| +...+..++..+...++.++|+..++++.+ |+...+..++..+...++..+|++.++++.
T Consensus 117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3578999999987 34 567777888999999999999999999985 444444444444444666666999999995
Q ss_pred hccCCCCchHHHHHHHHHHhhcCchhHHHH------------------------------------------------HH
Q 048799 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQL------------------------------------------------IH 107 (331)
Q Consensus 76 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~------------------------------------------------~~ 107 (331)
... |.+...+..+..++.+.|-...|.+ -+
T Consensus 197 ~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 197 RLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 532 2345555555555555554333332 23
Q ss_pred hhhhhc-CCCcch----hHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC--cHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 048799 108 GYGEKR-GFNAFH----IHVSNCLIDTYAKCGCIFSALKLFEDISVERK--NLVSWTSIISGFAMHGMGKEAVENFERMQ 180 (331)
Q Consensus 108 ~~~~~~-~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 180 (331)
+.+... +..|+. ..+..-.+-++...|++.++++.|+.+..... ...+-..+.++|...+++++|+.+|+.+.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 333321 111211 11222345567789999999999999986642 34566678899999999999999999987
Q ss_pred hcc-----CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcC----------CCCcH---hhHHHHHHHHHhcCCHHH
Q 048799 181 KVV-----LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECE----------VLPDI---KHYGCLIDMLGRAGRLEQ 242 (331)
Q Consensus 181 ~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~---~~~~~l~~~~~~~g~~~~ 242 (331)
... ..++......|.-++...+++++|..+++.+.+... -.|+. ..+..++..+.-.|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 643 123444457889999999999999999999987311 01221 234556778889999999
Q ss_pred HHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 243 AEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 243 A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
|++.++++... +-|......+...+...|.+..|++.++.+....|++..+....+..+...+++.+|..+.+...+..
T Consensus 435 Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 435 AQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 99999999877 55789999999999999999999999999999999999999999999999999999999887775543
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.73 E-value=1.7e-14 Score=121.82 Aligned_cols=90 Identities=12% Similarity=-0.005 Sum_probs=38.7
Q ss_pred HHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChH
Q 048799 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGK 170 (331)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 170 (331)
.+....|+.+.|.+.+.++.+..+.+ ...+.......+...|+++.|...++.+.+..| +...+..+...+...|+++
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~p~~-~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELAGND-NILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence 34444444444444444444332221 111222234444444444444444444444433 2334444444444444444
Q ss_pred HHHHHHHHHHhc
Q 048799 171 EAVENFERMQKV 182 (331)
Q Consensus 171 ~a~~~~~~m~~~ 182 (331)
+|.+++..+.+.
T Consensus 205 ~a~~~l~~l~k~ 216 (409)
T TIGR00540 205 ALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHHHHHc
Confidence 444444444444
No 35
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=2.6e-14 Score=109.61 Aligned_cols=302 Identities=9% Similarity=0.005 Sum_probs=220.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCCCCchh---HHHHHHHHHhcCChhHHHHHHHHHHhccCCCCch--HHHHHHHHHH
Q 048799 20 WNVMITGLVKWGELEYARSLFEEMPCRNVVS---WTGIIDGYTRMNRSNGALALFRRMVACEYTEPSE--ITILAVFPAI 94 (331)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~ 94 (331)
|-.=++.+ -..+.++|.++|-+|.+.|..+ .-+|.+.|.+.|.+++|+.+-+.+..+.+..-+. .....|..-|
T Consensus 39 Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFL-LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHH-hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence 43333333 3578899999999998655554 4578888999999999999999885543332222 2445577788
Q ss_pred hhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcH------HHHHHHHHHHHccCC
Q 048799 95 WQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNL------VSWTSIISGFAMHGM 168 (331)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~ 168 (331)
...|-+|.|+.+|..+.+.+.- -..+...|+..|-...+|++|+++-++..+..+.. ..|--+...+....+
T Consensus 118 m~aGl~DRAE~~f~~L~de~ef--a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEF--AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhh--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 8999999999999999886644 45677789999999999999999988887664322 235566666777889
Q ss_pred hHHHHHHHHHHHhccCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHH
Q 048799 169 GKEAVENFERMQKVVLKPNR-VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247 (331)
Q Consensus 169 ~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 247 (331)
.+.|..++.+..+.+ |+. ..-..+.+.....|+++.|.+.++.+.++ +..--..+...|..+|...|+.++...++
T Consensus 196 ~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 196 VDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred HHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999988754 333 22334667788899999999999999887 54445677888899999999999999999
Q ss_pred hhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHh---hhccCcchHHHHHHHhhccccC
Q 048799 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA---GVWRYGDAERLRRVVDERNALK 324 (331)
Q Consensus 248 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~~~~ 324 (331)
.++.+..+....-..+...-....-.+.|...+.+-++..|.. ..+..++..-. .-|+..+....++.|....++.
T Consensus 273 ~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~ 351 (389)
T COG2956 273 RRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRR 351 (389)
T ss_pred HHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhh
Confidence 9988886666655555555555555666777777666667765 44555555432 3456778888888888877776
Q ss_pred CCCC
Q 048799 325 FPGR 328 (331)
Q Consensus 325 ~~~~ 328 (331)
.|.|
T Consensus 352 ~~~Y 355 (389)
T COG2956 352 KPRY 355 (389)
T ss_pred cCCc
Confidence 6654
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.1e-14 Score=117.45 Aligned_cols=215 Identities=15% Similarity=0.082 Sum_probs=170.8
Q ss_pred cCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHH
Q 048799 97 NGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVEN 175 (331)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 175 (331)
.|+.-.|..-|+..++..+. +...|.-+...|....+-.+....|..+.+.+| ++.+|..-...+.-.+++++|..-
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~--~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA--FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc--cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 35555666666666666554 334466677888888888999999998887755 677787777777788899999999
Q ss_pred HHHHHhccCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCC
Q 048799 176 FERMQKVVLKP-NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI 254 (331)
Q Consensus 176 ~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 254 (331)
|++.+. +.| +...|..+..+..+.+.+++++..|++.++ .+|..+.+|+...+.+...++++.|.+.|+.++...
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999877 445 445666676677788999999999999988 466678899999999999999999999999988774
Q ss_pred cc---------HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHh
Q 048799 255 TN---------VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVD 318 (331)
Q Consensus 255 p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (331)
|. +.+...++..-.+ +++..|+.+++++.+++|.+...|..|+....+.|+.++|+++|++-.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 43 2222223322233 899999999999999999999999999999999999999999998653
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=9.2e-14 Score=111.52 Aligned_cols=164 Identities=11% Similarity=0.043 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHH
Q 048799 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN-RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLI 231 (331)
Q Consensus 153 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 231 (331)
+.|+..+.+-|.-.++.++|+..|++..+.+ |. ...|+.+..-|...++...|.+-++.+++- .+.|-..|-.|.
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p~DyRAWYGLG 405 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NPRDYRAWYGLG 405 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--CchhHHHHhhhh
Confidence 3444555666777889999999999998854 44 466788888899999999999999999863 334889999999
Q ss_pred HHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcch
Q 048799 232 DMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDA 310 (331)
Q Consensus 232 ~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 310 (331)
++|.-.+.+.-|+-.|+++... +.|+..|..|+.+|.+.++.++|++.|+.+...+......+..++.+|.+.++.++|
T Consensus 406 QaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 406 QAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999999888 447899999999999999999999999999987666668999999999999999999
Q ss_pred HHHHHHHhhc
Q 048799 311 ERLRRVVDER 320 (331)
Q Consensus 311 ~~~~~~~~~~ 320 (331)
...+++..+.
T Consensus 486 a~~yek~v~~ 495 (559)
T KOG1155|consen 486 AQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHHH
Confidence 9999888763
No 38
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.67 E-value=5.3e-14 Score=110.17 Aligned_cols=200 Identities=12% Similarity=0.055 Sum_probs=144.0
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 197 (331)
....+..+...+...|++++|...++++....| +...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 345666777777778888888888877766554 45666777777777788888888887776643 2344566667777
Q ss_pred HhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHH
Q 048799 198 CSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMG 276 (331)
Q Consensus 198 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a 276 (331)
+...|++++|.+.++++.+....+.....+..+...+...|++++|.+.+.+.....| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 7778888888888888776412222445566677778888888888888888776633 456777777888888888888
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhh
Q 048799 277 ERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319 (331)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (331)
...++++.+..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8888888877676666677777788888888888887776654
No 39
>PRK12370 invasion protein regulator; Provisional
Probab=99.66 E-value=1.4e-13 Score=120.65 Aligned_cols=263 Identities=14% Similarity=0.058 Sum_probs=190.2
Q ss_pred CchhHHHHHHHHHh-----cCChhHHHHHHHHHHhccCCCCc-hHHHHHHHHHHh---------hcCchhHHHHHHhhhh
Q 048799 47 NVVSWTGIIDGYTR-----MNRSNGALALFRRMVACEYTEPS-EITILAVFPAIW---------QNGDVRNCQLIHGYGE 111 (331)
Q Consensus 47 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 111 (331)
+...|...+.+... .+++++|...|++.+.. .|+ ...+..+..++. ..+++++|...+++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 44555555555321 23467999999998543 343 445655555443 2345899999999999
Q ss_pred hcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc-HHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCH-H
Q 048799 112 KRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR-V 189 (331)
Q Consensus 112 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~ 189 (331)
+..+. +..++..+...+...|++++|...|+++....|+ ...+..+..++...|++++|+..+++..+.. |+. .
T Consensus 332 ~ldP~--~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~ 407 (553)
T PRK12370 332 ELDHN--NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAA 407 (553)
T ss_pred hcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChh
Confidence 98655 7888889999999999999999999999988774 6788889999999999999999999998854 443 2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhcCCCC-cHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccH-HHHHHHHHHH
Q 048799 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNV-VVWRTLLGAC 267 (331)
Q Consensus 190 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~ 267 (331)
.+..++..+...|++++|...++++.+. . +| +...+..+..++...|+.++|...+.++....|+. ...+.+...|
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 3333444566789999999999998764 3 34 45567778888999999999999999987765554 4455555667
Q ss_pred hcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 268 SFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 268 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
...| +.|...++.+.+..-..+.........+.-.|+.+.+... +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7777 4888888887763222212233356666667777766665 7776653
No 40
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.66 E-value=1.1e-12 Score=103.71 Aligned_cols=286 Identities=12% Similarity=0.055 Sum_probs=214.1
Q ss_pred cCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHH
Q 048799 30 WGELEYARSLFEEMPC---RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLI 106 (331)
Q Consensus 30 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 106 (331)
.|++.+|+++..+-.+ .....|..-+.+.-+.|+.+.+-.++.+. .+....++.....+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~ea-ae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEA-AELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHH-hccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 6899999998887653 23345555566777889999999999998 4432345566677777888899999999999
Q ss_pred HhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC---------cHHHHHHHHHHHHccCChHHHHHHHH
Q 048799 107 HGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK---------NLVSWTSIISGFAMHGMGKEAVENFE 177 (331)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~ 177 (331)
...+.+.++. .+.+......+|.+.|++.....++.++.+.+. ...+|+.++.=....+..+.-...++
T Consensus 176 v~~ll~~~pr--~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 176 VDQLLEMTPR--HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHhCcC--ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 9999888766 677778889999999999999999999877621 12456666666655566666555565
Q ss_pred HHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-Ccc
Q 048799 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITN 256 (331)
Q Consensus 178 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~ 256 (331)
..-. ..+-++..-..++.-+.+.|+.++|.++..+..++ +..|+.. .+ -.+.+-++.+.-.+..+..... +.+
T Consensus 254 ~~pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~~-~~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 254 NQPR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---RL-IPRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred hccH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---HH-HhhcCCCCchHHHHHHHHHHHhCCCC
Confidence 5432 24455666667778888999999999999998887 6655521 12 2345667777666666665555 335
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhccccCC
Q 048799 257 VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKF 325 (331)
Q Consensus 257 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 325 (331)
+..+.+|...|.+.+.+.+|...|+.+.+..|+. ++|..++.++.+.|+..+|.++.++-.-.-.+|.
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 6888999999999999999999999998877776 8899999999999999999999888765444443
No 41
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=7.7e-13 Score=106.76 Aligned_cols=322 Identities=14% Similarity=0.122 Sum_probs=204.3
Q ss_pred ccchhHHhhhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHhhCC--CCCchhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048799 2 LKDGSKLFDELP--ERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDGYTRMNRSNGALALFRRMVAC 77 (331)
Q Consensus 2 ~~~A~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 77 (331)
+..|.++|++-. +|+..+|++.|..-.+-+.++.|..+|+... .|++.+|--..+.-.+.|.+..|.++|+..+..
T Consensus 157 i~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 157 IAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 455666666543 6777777777777777777777777777643 566666666666666667777777777666433
Q ss_pred cCCC-CchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHH--------HHHhhh
Q 048799 78 EYTE-PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL--------FEDISV 148 (331)
Q Consensus 78 ~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~--------~~~~~~ 148 (331)
-|.. .+...+.+....-.+.+.++.|.-+|+-+++.-+.......|..+...=-+-|+....... |+.+.+
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 2211 1112233333333445566666666666665533321234444444333344443332222 233333
Q ss_pred cCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHH-------HHHHHHHH---HhccCChHHHHHHHHHHHHh
Q 048799 149 ERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRV-------TFLSVLNA---CSHGGLVEEGLKFFDKMVEE 217 (331)
Q Consensus 149 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~l~~~---~~~~~~~~~a~~~~~~~~~~ 217 (331)
.+| |-.+|--.+..-...|+.+...++|++.+.+ ++|-.. .|.-+=-+ -....+.+.+.++++..++.
T Consensus 317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 344 5667777777777788889999999888754 555221 12111111 12467788888888888762
Q ss_pred cCCCCcHhhHH----HHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCcc
Q 048799 218 CEVLPDIKHYG----CLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD 293 (331)
Q Consensus 218 ~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 293 (331)
+|-...||. ...+...++.++..|.+++..++...|...++...|..-.+.++++....+|++.++..|.+..+
T Consensus 396 --IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~ 473 (677)
T KOG1915|consen 396 --IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYA 473 (677)
T ss_pred --cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH
Confidence 333334443 33444457788888888888888888888888888888888888899999999988888888888
Q ss_pred HHHHHHHHhhhccCcchHHHHHHHhhccccCCC
Q 048799 294 YVLMYNILAGVWRYGDAERLRRVVDERNALKFP 326 (331)
Q Consensus 294 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 326 (331)
|...+..-...|+++.|..+|+..........|
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi~qp~ldmp 506 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAISQPALDMP 506 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccH
Confidence 888888888888888888888877765544333
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=3.1e-13 Score=108.60 Aligned_cols=252 Identities=14% Similarity=0.099 Sum_probs=185.8
Q ss_pred cCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCc-chhH------------------
Q 048799 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA-FHIH------------------ 121 (331)
Q Consensus 61 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~------------------ 121 (331)
..+.++++.-.+.. ...|.+-+...-+....+.....|+++|+.+|+++.+..+-. .|..
T Consensus 240 l~q~~e~~~k~e~l-~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 240 LHQHEEALQKKERL-SSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHH-HhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 33445555544444 334443333333334444456667777777777766653211 1222
Q ss_pred -------------HHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCC
Q 048799 122 -------------VSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187 (331)
Q Consensus 122 -------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 187 (331)
++..+++-|.-.++.++|...|+++.+.+| ...+|+.+..-|...++...|++-++..++-. +-|
T Consensus 319 A~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~D 397 (559)
T KOG1155|consen 319 AQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRD 397 (559)
T ss_pred HHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chh
Confidence 333444556667788999999999998877 46789999999999999999999999998843 336
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCC-cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHH
Q 048799 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLG 265 (331)
Q Consensus 188 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~ 265 (331)
-..|-.|.++|.-.+...-|+-+|+++.+ ++| |..+|.+|.++|.+.++.++|.+.|.++... ..+...+..|.+
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 78899999999999999999999999985 355 8899999999999999999999999998877 456688999999
Q ss_pred HHhcCCchhHHHHHHHHHHHh-------hcCCCccHHHHHHHHhhhccCcchHHHHHHH
Q 048799 266 ACSFHGNVEMGERVTRKILEM-------ERGYGGDYVLMYNILAGVWRYGDAERLRRVV 317 (331)
Q Consensus 266 ~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (331)
.|-+.++.++|...|.+.++. .|....+..-|+.-+.+.+++++|..+....
T Consensus 475 Lye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 999999999999999999872 2222233334667777888888887654443
No 43
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.65 E-value=1.6e-13 Score=115.38 Aligned_cols=236 Identities=16% Similarity=0.097 Sum_probs=182.6
Q ss_pred hHHHHHHHHHHhhcCchhHHHHHHhhhhhc-----CCCcchh-HHHHHHHHHHHhcCCHhHHHHHHHHhhhc--------
Q 048799 84 EITILAVFPAIWQNGDVRNCQLIHGYGEKR-----GFNAFHI-HVSNCLIDTYAKCGCIFSALKLFEDISVE-------- 149 (331)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------- 149 (331)
..++..+...|...|+++.|+.+++..++. |...+.. ...+.+...|...+++++|..+|+++...
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 446667899999999999999999988765 2221122 34445788899999999999999998754
Q ss_pred CCc-HHHHHHHHHHHHccCChHHHHHHHHHHHhc-----cC-CCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHhcC--
Q 048799 150 RKN-LVSWTSIISGFAMHGMGKEAVENFERMQKV-----VL-KPNR-VTFLSVLNACSHGGLVEEGLKFFDKMVEECE-- 219 (331)
Q Consensus 150 ~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~-~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 219 (331)
.|. ..+++.|..+|.+.|++++|...+++..+- |. .|.. .-++.+...|+..+++++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 232 457888888999999999999888876531 11 1222 3466777788999999999999998776532
Q ss_pred CCC----cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC--------Cc-cHHHHHHHHHHHhcCCchhHHHHHHHHHHH-
Q 048799 220 VLP----DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE--------IT-NVVVWRTLLGACSFHGNVEMGERVTRKILE- 285 (331)
Q Consensus 220 ~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 285 (331)
+.+ -..+++.|...|...|++++|.++++++... .+ ....++.+...|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 222 2467899999999999999999999998765 11 245678888999999999999999998876
Q ss_pred ---hhcCC---CccHHHHHHHHhhhccCcchHHHHHHHhh
Q 048799 286 ---MERGY---GGDYVLMYNILAGVWRYGDAERLRRVVDE 319 (331)
Q Consensus 286 ---~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (331)
..|++ ..+|..|+.+|.+.|++++|.++.+....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33444 45788899999999999999999888764
No 44
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.65 E-value=4.5e-13 Score=116.59 Aligned_cols=301 Identities=12% Similarity=0.074 Sum_probs=194.2
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCC------chhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCch--HH
Q 048799 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRN------VVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSE--IT 86 (331)
Q Consensus 15 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~ 86 (331)
.|+.+.+.|...|.-.|++..++.+...+...+ ..+|..+.++|...|++++|...|.+... ..|+. ..
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k---~~~d~~~l~ 344 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK---ADNDNFVLP 344 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---cCCCCcccc
Confidence 355666667777777777777777766665321 23566777777777777777777766632 22332 34
Q ss_pred HHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcC----CHhHHHHHHHHhhhcCC-cHHHHHHHHH
Q 048799 87 ILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG----CIFSALKLFEDISVERK-NLVSWTSIIS 161 (331)
Q Consensus 87 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~-~~~~~~~l~~ 161 (331)
+..+...+...|+++.+...|+...+..+. +..+...|+..|...+ ..+.|..++.+.....| +..+|-.+..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~--~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laq 422 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPN--NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQ 422 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcc--hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 445666777777777777777777776443 5566666666666654 45666666666655533 5666766666
Q ss_pred HHHccCChHHHHHHHHHHH----hccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcC--CCCcH------hhHHH
Q 048799 162 GFAMHGMGKEAVENFERMQ----KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECE--VLPDI------KHYGC 229 (331)
Q Consensus 162 ~~~~~~~~~~a~~~~~~m~----~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~------~~~~~ 229 (331)
.+...+ ...++..|..+. ..+..+.....|.+...+...|+++.|...|........ ..++. .+--.
T Consensus 423 l~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 423 LLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 665443 333366655433 344446677777888778888888888888877764310 11222 23334
Q ss_pred HHHHHHhcCCHHHHHHHHhhcccCCcc-HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCc
Q 048799 230 LIDMLGRAGRLEQAEKVASGIPSEITN-VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308 (331)
Q Consensus 230 l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 308 (331)
+...+-..++++.|.+.|..+....|. ...|..++......++..+|...++.+...+..++..+..++..+.+...|.
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence 455556667888888888887777555 3555555544455677788888888888877777788888888888888888
Q ss_pred chHHHHHHHhhcc
Q 048799 309 DAERLRRVVDERN 321 (331)
Q Consensus 309 ~a~~~~~~~~~~~ 321 (331)
.|.+-|+.+.+.-
T Consensus 582 ~a~k~f~~i~~~~ 594 (1018)
T KOG2002|consen 582 PAKKKFETILKKT 594 (1018)
T ss_pred ccccHHHHHHhhh
Confidence 8887666665543
No 45
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=2.7e-12 Score=101.49 Aligned_cols=277 Identities=13% Similarity=0.016 Sum_probs=220.9
Q ss_pred CccchhHHhhhcC---CchHHHHHHHHHHHHHcCCHHHHHHHHhhCCCC----CchhHHHHHHHHHhcCChhHHHHHHHH
Q 048799 1 FLKDGSKLFDELP---ERNLVTWNVMITGLVKWGELEYARSLFEEMPCR----NVVSWTGIIDGYTRMNRSNGALALFRR 73 (331)
Q Consensus 1 ~~~~A~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 73 (331)
++.+|.++..+.. +-....|..-+.+-.+.|+.+.+-+++.+..++ +...+-+........|+++.|..-+.+
T Consensus 99 ~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ 178 (400)
T COG3071 99 DFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQ 178 (400)
T ss_pred cHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 4567777777654 234456777778889999999999999998753 345666777889999999999999998
Q ss_pred HHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcc------hhHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 048799 74 MVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF------HIHVSNCLIDTYAKCGCIFSALKLFEDIS 147 (331)
Q Consensus 74 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 147 (331)
+.. .+ +-++........+|.+.|++.....+...+.+.+.-.+ ...+|..+++-....+..+.-...++...
T Consensus 179 ll~-~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 179 LLE-MT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHH-hC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 843 32 34566788889999999999999999999999886541 12466666666666666776667777776
Q ss_pred hc-CCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhh
Q 048799 148 VE-RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH 226 (331)
Q Consensus 148 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 226 (331)
.. ..++..-..++.-+.+.|+.++|.++.++..+.+..|+. ..+ -.+.+-++.+.-++..++..+. .+-++..
T Consensus 257 r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~~-~~~l~~~d~~~l~k~~e~~l~~--h~~~p~L 330 (400)
T COG3071 257 RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CRL-IPRLRPGDPEPLIKAAEKWLKQ--HPEDPLL 330 (400)
T ss_pred HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HHH-HhhcCCCCchHHHHHHHHHHHh--CCCChhH
Confidence 55 345666777888899999999999999999988776662 222 2456788888888888888775 3335588
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 227 YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 227 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
+..|...|.+.+.+.+|...|+......|+..+|+.+..++.+.|+..+|.++.++...
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 89999999999999999999999888899999999999999999999999999999986
No 46
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=5.4e-13 Score=106.36 Aligned_cols=306 Identities=16% Similarity=0.142 Sum_probs=206.1
Q ss_pred HhhhcCCchHHHHHHHHHHHHHcCCHHHHHHHHhhCCC----CCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCc
Q 048799 8 LFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPC----RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPS 83 (331)
Q Consensus 8 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 83 (331)
++-+..+.+..+|.+||.++|+-...++|.++|++-.. -+..+||.+|.+-. +....+++.+| ......||
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EM-isqkm~Pn 272 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEM-ISQKMTPN 272 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHH-HHhhcCCc
Confidence 44455556778999999999999999999999998763 46678888877532 22337788888 66678999
Q ss_pred hHHHHHHHHHHhhcCchhH----HHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhH-HHHHHHHhhhc---------
Q 048799 84 EITILAVFPAIWQNGDVRN----CQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFS-ALKLFEDISVE--------- 149 (331)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~--------- 149 (331)
..|+|+++.+..+.|+++. |.+++.+|.+.|+.| +...|..++..+++.++..+ |..+...+...
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVeP-sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEP-SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCc-chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 9999999999999997765 467888999999999 99999999999988877644 44444444322
Q ss_pred CC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhcc----CCCCH---HHHHHHHHHHhccCChHHHHHHHHHHHHhcCCC
Q 048799 150 RK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVV----LKPNR---VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVL 221 (331)
Q Consensus 150 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 221 (331)
.| +...|...+..|....+.+-|.++-.-+.... +.|+. +-|..+....|.....+.-...|+.|.-. -+-
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~-~y~ 430 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS-AYF 430 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-eec
Confidence 23 34456677777778888887777665543321 33332 34566777777888888888888888776 667
Q ss_pred CcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC--CccHHHHHHHHHHHhcCC-ch--h---H----HHHHHHHH---HHh
Q 048799 222 PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE--ITNVVVWRTLLGACSFHG-NV--E---M----GERVTRKI---LEM 286 (331)
Q Consensus 222 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g-~~--~---~----a~~~~~~~---~~~ 286 (331)
|+..+...++++..-.|.++-.-+++..+... .-+...-..++..+++.. +. . + ..++.-.+ .+.
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~ 510 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYES 510 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 78888888888888888888877777776654 112222222333333332 11 0 0 00111111 110
Q ss_pred -------hcCCCccHHHHHHHHhhhccCcchHHHHHHHhhc
Q 048799 287 -------ERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320 (331)
Q Consensus 287 -------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (331)
..-.+......+..+.+.|+.++|.+++..+.++
T Consensus 511 ~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~ 551 (625)
T KOG4422|consen 511 QPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRK 551 (625)
T ss_pred hHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhc
Confidence 1112344566677778888888888888777543
No 47
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.64 E-value=4e-13 Score=116.89 Aligned_cols=240 Identities=9% Similarity=-0.018 Sum_probs=141.8
Q ss_pred CchHHHHHHHHHHhhcCchhHHHHHHhhhhhc---CCCc-----chhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc-
Q 048799 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKR---GFNA-----FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN- 152 (331)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 152 (331)
+-+...|.+.......|++..|...|..+... ...+ .+..+-..+..++-..++++.|.+.|..+.+..|+
T Consensus 450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~Y 529 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGY 529 (1018)
T ss_pred CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchh
Confidence 34445555555555555555555555554433 0011 01112233445555555555555555555555443
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHH
Q 048799 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLID 232 (331)
Q Consensus 153 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (331)
+..|..++......+...+|...++...... ..++..+..+...+.....+..|.+-|....+.....+|.....+|..
T Consensus 530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN 608 (1018)
T KOG2002|consen 530 IDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGN 608 (1018)
T ss_pred HHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhH
Confidence 3334444433334456667777776665432 223333444555666666666666666655554333456665555655
Q ss_pred HHHh------------cCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHH
Q 048799 233 MLGR------------AGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299 (331)
Q Consensus 233 ~~~~------------~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 299 (331)
.|.+ .+..++|.++|.++... +.|...-+-+..+++..|++..|..+|.++.+...+.+.+|..++.
T Consensus 609 ~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah 688 (1018)
T KOG2002|consen 609 VYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAH 688 (1018)
T ss_pred HHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHH
Confidence 4432 24467777777777766 4466677777777888888888888888888765566678888888
Q ss_pred HHhhhccCcchHHHHHHHhhccc
Q 048799 300 ILAGVWRYGDAERLRRVVDERNA 322 (331)
Q Consensus 300 ~~~~~g~~~~a~~~~~~~~~~~~ 322 (331)
+|..+|++..|+++|+...++..
T Consensus 689 ~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 689 CYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888888887766543
No 48
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.64 E-value=3.3e-13 Score=105.69 Aligned_cols=196 Identities=11% Similarity=0.030 Sum_probs=95.0
Q ss_pred HHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHH
Q 048799 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFA 164 (331)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 164 (331)
.+..+...+...|++++|...++++++..+. +...+..+...+...|++++|.+.+++.....| +...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPD--DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 3444444444455555555555544443221 344444455555555555555555555544432 2344444455555
Q ss_pred ccCChHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHH
Q 048799 165 MHGMGKEAVENFERMQKVVL-KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243 (331)
Q Consensus 165 ~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 243 (331)
..|++++|.+.+++...... ......+..+...+...|++++|...+.+..+. .+.+...+..+...+...|++++|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555543211 112233444455555555555555555555542 122344455555555555566555
Q ss_pred HHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 244 EKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 244 ~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
...++++... +.+...+..++..+...|+.+.|..+.+.+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 5555555443 22334444445555555566665555555443
No 49
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.63 E-value=8.5e-13 Score=106.44 Aligned_cols=234 Identities=8% Similarity=-0.073 Sum_probs=168.2
Q ss_pred cCChhHHHHHHHHHHhccCCCCc--hHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhH
Q 048799 61 MNRSNGALALFRRMVACEYTEPS--EITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFS 138 (331)
Q Consensus 61 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 138 (331)
.+..+.++.-+.+++......|+ ...|..+...+...|+.++|...|+++++..+. +..+|+.+...+...|++++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD--MADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHCCCHHH
Confidence 35667788888877544333333 356778888899999999999999999998654 78899999999999999999
Q ss_pred HHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 048799 139 ALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE 217 (331)
Q Consensus 139 A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 217 (331)
|...|+++.+..| +..+|..+..++...|++++|++.|++..+.. |+..........+...++.++|...|.+....
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999999988877 46788889999999999999999999998743 54332222222344567899999999776643
Q ss_pred cCCCCcHhhHHHHHHHHHhcCCHHHH--HHHHhhcccC-----CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-C
Q 048799 218 CEVLPDIKHYGCLIDMLGRAGRLEQA--EKVASGIPSE-----ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER-G 289 (331)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~ 289 (331)
..|+...+ .+. ....|+...+ .+.+...... +.....|..+...+.+.|++++|...|+++.+.+| +
T Consensus 195 --~~~~~~~~-~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 195 --LDKEQWGW-NIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred --CCccccHH-HHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 33433222 233 3334555433 3333322222 12346899999999999999999999999999886 4
Q ss_pred CCccHHHHHHHHhh
Q 048799 290 YGGDYVLMYNILAG 303 (331)
Q Consensus 290 ~~~~~~~l~~~~~~ 303 (331)
.+.....+++....
T Consensus 270 ~~e~~~~~~e~~~~ 283 (296)
T PRK11189 270 FVEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 50
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=2.6e-14 Score=109.83 Aligned_cols=234 Identities=12% Similarity=0.049 Sum_probs=170.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHH
Q 048799 52 TGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYA 131 (331)
Q Consensus 52 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (331)
+.+.++|.+.|.+.+|.+.|+..+. ..|-+.||..|-++|.+..+...|+.++.+.++.-+. ++.......+.+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~---q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~--~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT---QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF--DVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh---cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc--hhhhhhhhHHHHH
Confidence 4677788888888888888877644 3466677777888888888888888888877776433 6666666777777
Q ss_pred hcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHH
Q 048799 132 KCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210 (331)
Q Consensus 132 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 210 (331)
..++.++|.++|+...+..| ++.+...+...|.-.++++-|+..|+++.+.|+ -+...|+.+.-+|.-.++++-++.-
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 78888888888888776654 566666666777777888888888888888775 3666777777777778888888887
Q ss_pred HHHHHHhcCCCCc--HhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh
Q 048799 211 FDKMVEECEVLPD--IKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEME 287 (331)
Q Consensus 211 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 287 (331)
|++.... --.|+ ..+|-.+.......|++.-|.+.|+-+... ..+...++.|.-.-.+.|+++.|..++..+....
T Consensus 381 f~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 7777654 33332 356666777777778888888888777666 3345777777777777888888888888777777
Q ss_pred cCCCc
Q 048799 288 RGYGG 292 (331)
Q Consensus 288 ~~~~~ 292 (331)
|+-.+
T Consensus 460 P~m~E 464 (478)
T KOG1129|consen 460 PDMAE 464 (478)
T ss_pred ccccc
Confidence 76433
No 51
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.62 E-value=2.2e-12 Score=108.03 Aligned_cols=300 Identities=12% Similarity=0.040 Sum_probs=197.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHH
Q 048799 18 VTWNVMITGLVKWGELEYARSLFEEMPC---RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAI 94 (331)
Q Consensus 18 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (331)
..|......+...|++..|..++...-+ .+...|-.-+.......++++|..+|.+. .. ..|+...|..-+...
T Consensus 585 ~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llaka-r~--~sgTeRv~mKs~~~e 661 (913)
T KOG0495|consen 585 ILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKA-RS--ISGTERVWMKSANLE 661 (913)
T ss_pred hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHH-hc--cCCcchhhHHHhHHH
Confidence 3344444555566666666666665542 23345556666666666677777776666 22 234555555544444
Q ss_pred hhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc-HHHHHHHHHHHHccCChHHHH
Q 048799 95 WQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKEAV 173 (331)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 173 (331)
--.+..++|++++++.++.-+. -...|..+...+-+.++++.|...|..-.+..|+ +..|-.+...--+.|..-.|.
T Consensus 662 r~ld~~eeA~rllEe~lk~fp~--f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR 739 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALKSFPD--FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRAR 739 (913)
T ss_pred HHhhhHHHHHHHHHHHHHhCCc--hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHH
Confidence 5556666777777666665332 4455666666666666777776666665555453 445666666666666677777
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC
Q 048799 174 ENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253 (331)
Q Consensus 174 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 253 (331)
.+|++..-.+ +-+...|...|..-.+.|+.+.|..+..++.+. ++.+...|..-|...-+.++-......+++...
T Consensus 740 ~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce~- 815 (913)
T KOG0495|consen 740 SILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH- 815 (913)
T ss_pred HHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhccC-
Confidence 7776665443 235566666666666777777777777666663 444556666666666666665555555555543
Q ss_pred CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhccccCCCCCCC
Q 048799 254 ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSL 330 (331)
Q Consensus 254 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~sw 330 (331)
|+.....+...+....++++|.+.|.++++.+|++..+|.-+...+.+.|.-++-.+++..+.. ..|..|..|
T Consensus 816 --dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W 888 (913)
T KOG0495|consen 816 --DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELW 888 (913)
T ss_pred --CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHH
Confidence 5555666777788888999999999999999999999999999999999999999999998876 345666666
No 52
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=5.3e-13 Score=107.30 Aligned_cols=274 Identities=11% Similarity=0.046 Sum_probs=209.2
Q ss_pred HHHHcCCHHHHHHHHhhCCCCCchhHH----HHH-HHHHh-cCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCc
Q 048799 26 GLVKWGELEYARSLFEEMPCRNVVSWT----GII-DGYTR-MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGD 99 (331)
Q Consensus 26 ~~~~~g~~~~A~~~~~~~~~~~~~~~~----~l~-~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 99 (331)
.+.+.|+++.|+++++-..+.|..+-. .|- .-|.+ ..++..|.+.-+..+... .-+......-.+.....|+
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d--ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID--RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc--ccCHHHhhcCCceeeecCc
Confidence 467899999999999887755443322 222 22333 346777777666553222 2344444445555667899
Q ss_pred hhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc-CCcHHHHHHHHHHHHccCChHHHHHHHHH
Q 048799 100 VRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIISGFAMHGMGKEAVENFER 178 (331)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 178 (331)
+++|.+.|++++...-.. . .+...+.-.+-..|++++|+..|-++... ..+......+.+.|-...+..+|++++-+
T Consensus 506 ~dka~~~ykeal~ndasc-~-ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASC-T-EALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHHHHHHHHHHcCchHH-H-HHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 999999999999875443 3 33334566788899999999999888544 34566677778889999999999999987
Q ss_pred HHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHH
Q 048799 179 MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258 (331)
Q Consensus 179 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 258 (331)
.... ++.|+.....|...|-+.|+-.+|.+.+-.--+ -++.+..+...|...|....-++++..+|+++.-.+|+..
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 6542 455778899999999999999999887765543 4566899999999999999999999999999887789999
Q ss_pred HHHHHHHHH-hcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhcc
Q 048799 259 VWRTLLGAC-SFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306 (331)
Q Consensus 259 ~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 306 (331)
-|..++..| .+.|++.+|..+|+...+.-|.+......|.+.+...|-
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999988665 578999999999999999999988888888888777664
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5e-13 Score=109.87 Aligned_cols=263 Identities=11% Similarity=-0.042 Sum_probs=209.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHH
Q 048799 49 VSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLID 128 (331)
Q Consensus 49 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (331)
........-+...+++.+..++.+......+ +....+..-+.++...|+..+-..+-.++++.-+. .+..|.+++-
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~dp--fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~--~a~sW~aVg~ 320 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKDP--FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS--KALSWFAVGC 320 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhCC--CCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC--CCcchhhHHH
Confidence 3344445557788999999999999865544 45555555666888999988888888888888544 7788889999
Q ss_pred HHHhcCCHhHHHHHHHHhhhcCCc-HHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHH
Q 048799 129 TYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEG 207 (331)
Q Consensus 129 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 207 (331)
-|.-.|++++|.+.|.+....+|. ...|-.+..+|+-.|..++|+..+...-+. ++-...-+.-+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 999999999999999998777664 678999999999999999999998876552 112222233455568889999999
Q ss_pred HHHHHHHHHhcCCCC-cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-------Cc-cHHHHHHHHHHHhcCCchhHHHH
Q 048799 208 LKFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-------IT-NVVVWRTLLGACSFHGNVEMGER 278 (331)
Q Consensus 208 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p-~~~~~~~l~~~~~~~g~~~~a~~ 278 (331)
.++|.++.. +.| |+...+-+.-.....+.+.+|..+|+..... .+ -..+++.|+.+|.+.+.+++|+.
T Consensus 400 e~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQALA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHh---cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 999999874 445 7778888877777889999999999887633 11 34668888999999999999999
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhh
Q 048799 279 VTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319 (331)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (331)
.+++++.+.|.++.++..++-.|...|+++.|.+.|.+..-
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998876543
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.59 E-value=6.5e-13 Score=116.50 Aligned_cols=230 Identities=12% Similarity=-0.016 Sum_probs=176.7
Q ss_pred CchHHHHHHHHHHh-----hcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHh---------cCCHhHHHHHHHHhh
Q 048799 82 PSEITILAVFPAIW-----QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK---------CGCIFSALKLFEDIS 147 (331)
Q Consensus 82 ~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~ 147 (331)
.+...|...+.+.. ..+++++|...++++++..+. +...+..+..++.. .+++++|...++++.
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~--~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN--SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 34455555555432 234578999999999988554 66777777766553 245899999999998
Q ss_pred hcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCc-Hh
Q 048799 148 VERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD-IK 225 (331)
Q Consensus 148 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 225 (331)
...| +..++..+...+...|++++|+..|+++.+.+ +.+...+..+...+...|++++|...++++.+. .|+ ..
T Consensus 332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~ 407 (553)
T PRK12370 332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAA 407 (553)
T ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChh
Confidence 8877 57788888889999999999999999998854 234567788888999999999999999999865 443 33
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcccC-Cc-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhh
Q 048799 226 HYGCLIDMLGRAGRLEQAEKVASGIPSE-IT-NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303 (331)
Q Consensus 226 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (331)
.+..++..+...|++++|...++++... .| ++..+..+..++...|++++|...++++....|........+...|..
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 3344455577789999999999998765 34 455677788889999999999999999887777766667777778887
Q ss_pred hccCcchHHHHHHHhh
Q 048799 304 VWRYGDAERLRRVVDE 319 (331)
Q Consensus 304 ~g~~~~a~~~~~~~~~ 319 (331)
.|+ +|...++.+.+
T Consensus 488 ~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 488 NSE--RALPTIREFLE 501 (553)
T ss_pred cHH--HHHHHHHHHHH
Confidence 774 78777777655
No 55
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.58 E-value=1e-11 Score=107.58 Aligned_cols=301 Identities=14% Similarity=0.041 Sum_probs=224.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHH
Q 048799 17 LVTWNVMITGLVKWGELEYARSLFEEMPC---RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPA 93 (331)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (331)
....-.....+.-.|++++|..++.++.+ .+...|.+|...|-+.|+.+++...+-.+ ..-.+-|...|..+...
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA--AHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA--AHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHH--HhcCCCChHHHHHHHHH
Confidence 44444444555556999999999999874 45679999999999999999999887655 23345667899999999
Q ss_pred HhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcH------HHHHHHHHHHHccC
Q 048799 94 IWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNL------VSWTSIISGFAMHG 167 (331)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~~ 167 (331)
..+.|.++.|.-+|.++++..+. +....-.-...|-+.|+...|...|.++....|.+ ..--.++..+...+
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~--n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPS--NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999665 55555567889999999999999999998776621 22234456777788
Q ss_pred ChHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh----------------------c----CC
Q 048799 168 MGKEAVENFERMQKV-VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE----------------------C----EV 220 (331)
Q Consensus 168 ~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------~----~~ 220 (331)
+.+.|.+.++..... +-..+...++.++..+.+...++.|......+... + ++
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 889999999887763 23345567788888888888999998888777651 0 12
Q ss_pred CCcHhhHHHHHHHHH--hcCCHHHHHHHHhhcccC--CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcC-CCccHH
Q 048799 221 LPDIKHYGCLIDMLG--RAGRLEQAEKVASGIPSE--ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERG-YGGDYV 295 (331)
Q Consensus 221 ~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~ 295 (331)
.++..++. ++-++. +.+...+++.-+-.-... .-+...|.-+..+|...|++.+|+.++..+....+. +...|.
T Consensus 375 s~~l~v~r-l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 375 SYDLRVIR-LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred CccchhHh-HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 22333311 222233 344444444444333222 225678889999999999999999999999975543 446899
Q ss_pred HHHHHHhhhccCcchHHHHHHHhhccc
Q 048799 296 LMYNILAGVWRYGDAERLRRVVDERNA 322 (331)
Q Consensus 296 ~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (331)
.++.+|...|.+++|.+.++.+.....
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~p 480 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILAP 480 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 999999999999999999999877543
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=1.9e-13 Score=105.17 Aligned_cols=228 Identities=11% Similarity=-0.015 Sum_probs=197.6
Q ss_pred HHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHH-HHHHHHHHcc
Q 048799 88 LAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW-TSIISGFAMH 166 (331)
Q Consensus 88 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~l~~~~~~~ 166 (331)
+.+.++|.+.|.+.+|...++..++... -+.+|..|.+.|.+..+...|+.+|.+-.+.-|..+|| .-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~---~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP---HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC---chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 5688899999999999999999888855 45667779999999999999999999998887765555 4566778888
Q ss_pred CChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHH
Q 048799 167 GMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKV 246 (331)
Q Consensus 167 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 246 (331)
++.++|.++|+...+.. +.+......+...|.-.++.+-|.+++.++.+. |+. ++..|+.+.-+|.-.++++-++.-
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999988753 345566677777888899999999999999998 764 788999999999999999999999
Q ss_pred HhhcccC--Ccc--HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 247 ASGIPSE--ITN--VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 247 ~~~~~~~--~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
|.++... .|+ ..+|-.+.......|++..|.+.|+-++..+|++...+..|+..-.+.|+.++|..++.......
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9988766 344 57899999999999999999999999999999999999999999999999999999999876643
No 57
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.56 E-value=3.2e-11 Score=101.25 Aligned_cols=293 Identities=10% Similarity=0.010 Sum_probs=141.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhhCC------CCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHH
Q 048799 16 NLVTWNVMITGLVKWGELEYARSLFEEMP------CRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILA 89 (331)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 89 (331)
+...|-.=...|-..|..-.+..+..... +.--.+|+.-...|.+.+.++-|..+|...+.. .+-+...|..
T Consensus 478 ~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlr 555 (913)
T KOG0495|consen 478 NRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLR 555 (913)
T ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHH
Confidence 34444444444444444444444444332 112234555555555555555555555554221 1223334444
Q ss_pred HHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCC
Q 048799 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGM 168 (331)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 168 (331)
....--..|..+....+++++...-+. ....|......+-..|++..|..++.++....| +...|..-+.....+.+
T Consensus 556 a~~~ek~hgt~Esl~Allqkav~~~pk--ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e 633 (913)
T KOG0495|consen 556 AAMFEKSHGTRESLEALLQKAVEQCPK--AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDE 633 (913)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCc--chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhcccc
Confidence 444334445555555555555554332 344444444445555555555555555544433 23445555555555555
Q ss_pred hHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHh
Q 048799 169 GKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248 (331)
Q Consensus 169 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 248 (331)
++.|..+|.+... ..|+...|..-+......++.++|.+++++..+. ++.-...|..+.+.+-+.++++.|...|.
T Consensus 634 ~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~ 709 (913)
T KOG0495|consen 634 LERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYL 709 (913)
T ss_pred HHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5555555555444 2344444444444444445555555555555542 22223444555555555555555555555
Q ss_pred hcccCCc-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHH
Q 048799 249 GIPSEIT-NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRV 316 (331)
Q Consensus 249 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 316 (331)
.-....| .+..|..+...--+.|.+-.|..++++..-.+|++...|...+.+-.+.|+.++|..++.+
T Consensus 710 ~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 710 QGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred hccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5444423 2344444444444455555555555555555555555555555555555555555544433
No 58
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.53 E-value=5.5e-12 Score=106.27 Aligned_cols=237 Identities=13% Similarity=0.064 Sum_probs=182.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhc----cC-CCCchHH-HHHHHHHHhhcCchhHHHHHHhhhhhc-----CC-C
Q 048799 49 VSWTGIIDGYTRMNRSNGALALFRRMVAC----EY-TEPSEIT-ILAVFPAIWQNGDVRNCQLIHGYGEKR-----GF-N 116 (331)
Q Consensus 49 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~ 116 (331)
.+...|...|...|+++.|..+++..+.. .| ..|...+ .+.+...|...+++++|..+|+++... |. .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35566889999999999999999988543 11 1344443 344778889999999999999998753 22 2
Q ss_pred cchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc--------CCcH-HHHHHHHHHHHccCChHHHHHHHHHHHhc---cC
Q 048799 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE--------RKNL-VSWTSIISGFAMHGMGKEAVENFERMQKV---VL 184 (331)
Q Consensus 117 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~ 184 (331)
|.-..+++.|..+|.+.|++++|...++++... .|.+ ..++.++..++..+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 324567788888999999999999988877543 2332 34667778899999999999999876542 12
Q ss_pred CC----CHHHHHHHHHHHhccCChHHHHHHHHHHHHhc-----CCCC-cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-
Q 048799 185 KP----NRVTFLSVLNACSHGGLVEEGLKFFDKMVEEC-----EVLP-DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE- 253 (331)
Q Consensus 185 ~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 253 (331)
.+ ...+++.|...|...|++++|.+++++++... +..+ ....++.|...|.+.++..+|.++|.+....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22 24689999999999999999999999987652 1122 3456788899999999999999988876544
Q ss_pred ------Ccc-HHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 254 ------ITN-VVVWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 254 ------~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
.|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 444 47899999999999999999999999985
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=2.7e-11 Score=98.30 Aligned_cols=296 Identities=13% Similarity=0.022 Sum_probs=207.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCC--CCC-chhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCch-HHHHHHHHHHh
Q 048799 20 WNVMITGLVKWGELEYARSLFEEMP--CRN-VVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSE-ITILAVFPAIW 95 (331)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 95 (331)
+-....-|.+.|++++|++.|.+.. .|+ +..|.....+|...|+|+++.+.-.+.++ +.|+. ..+..-..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE---l~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE---LNPDYVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh---cCcHHHHHHHHHHHHHH
Confidence 4455667889999999999999987 577 78899999999999999999888777744 44553 35555556666
Q ss_pred hcCchhHHHH----------------------HHhh--------hhh-cC-CCcchhHHHHHHHHHHHh---------c-
Q 048799 96 QNGDVRNCQL----------------------IHGY--------GEK-RG-FNAFHIHVSNCLIDTYAK---------C- 133 (331)
Q Consensus 96 ~~~~~~~a~~----------------------~~~~--------~~~-~~-~~~~~~~~~~~l~~~~~~---------~- 133 (331)
..|++++|+. ++++ -.+ .+ +..|+.....+....+.. .
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 6777666542 1111 111 11 111133222222222210 0
Q ss_pred ---------------C---CHhHHHHHHHHhhhc---CC--c---------HHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 048799 134 ---------------G---CIFSALKLFEDISVE---RK--N---------LVSWTSIISGFAMHGMGKEAVENFERMQK 181 (331)
Q Consensus 134 ---------------g---~~~~A~~~~~~~~~~---~~--~---------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 181 (331)
+ .+.+|...+.+-... .+ + ..+.......+.-.|+.-.|...|+..+.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 0 122222222111110 11 1 12222223345567899999999999988
Q ss_pred ccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHH
Q 048799 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVW 260 (331)
Q Consensus 182 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~ 260 (331)
....++. .|-.+...|....+.++....|+.+.+. -+.++.+|..-.+.+.-.+++++|..-|++.+...| +...|
T Consensus 355 l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~l--dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~ 431 (606)
T KOG0547|consen 355 LDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDL--DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAY 431 (606)
T ss_pred cCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhc--CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHH
Confidence 6543333 2777778899999999999999999753 233778888888999999999999999999998844 46777
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 261 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
-.+..+..+.+++++++..|++..+.-|..+..|...+.++...+++++|.+.++...+..
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 7777788899999999999999999999999999999999999999999999999887753
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.6e-11 Score=100.01 Aligned_cols=282 Identities=12% Similarity=-0.020 Sum_probs=220.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHH
Q 048799 16 NLVTWNVMITGLVKWGELEYARSLFEEMPC---RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92 (331)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (331)
+......-.+-|...+++.+...+++...+ +....+..-|.++...|+..+-.-+=.+++.. .|..+.+|.++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHHH
Confidence 334444555667788999999999998874 34456666677888999988888777777543 3455779999999
Q ss_pred HHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHH
Q 048799 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKE 171 (331)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 171 (331)
-|...|..++|.+.|.+....... -...|..++..|.-.|..+.|+..|..+.+.-| ....+..+.--|.+.+..+-
T Consensus 321 YYl~i~k~seARry~SKat~lD~~--fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT--FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc--ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 999999999999999998877544 567889999999999999999999998876633 22233344455778899999
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhc-CCCC----cHhhHHHHHHHHHhcCCHHHHHHH
Q 048799 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEEC-EVLP----DIKHYGCLIDMLGRAGRLEQAEKV 246 (331)
Q Consensus 172 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~A~~~ 246 (331)
|.+.|.+...- .+.|+...+-+.-.....+.+.+|..+|+...... .+.+ -..+++.|..+|.+.+++++|+..
T Consensus 399 Ae~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 99999987663 23466777777777777899999999999887321 1111 234688999999999999999999
Q ss_pred HhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHh
Q 048799 247 ASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302 (331)
Q Consensus 247 ~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (331)
++..... +.+..++..+.-.|...|+++.|++.|.+++-+.|++..+-..|..+..
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 9998877 6688999999999999999999999999999999998555555554443
No 61
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.50 E-value=8.7e-12 Score=100.62 Aligned_cols=217 Identities=12% Similarity=-0.003 Sum_probs=160.9
Q ss_pred cCchhHHHHHHhhhhhcCC-Cc-chhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHH
Q 048799 97 NGDVRNCQLIHGYGEKRGF-NA-FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAV 173 (331)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~ 173 (331)
.+..+.++.-+.+++.... .| .....|..+...|...|++++|...|+++....| +...|+.+...+...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3566777777777776432 22 1356788889999999999999999999988876 5789999999999999999999
Q ss_pred HHHHHHHhccCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhccc
Q 048799 174 ENFERMQKVVLKP-NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252 (331)
Q Consensus 174 ~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 252 (331)
..|++..+. .| +..++..+..++...|++++|.+.++...+. .|+..........+...+++++|...+.+...
T Consensus 119 ~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 119 EAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999999874 45 4567788888899999999999999999875 44433222222234457889999999976554
Q ss_pred C-CccHHHHHHHHHHHhcCCchhHHHHHHHHHH-------HhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhccc
Q 048799 253 E-ITNVVVWRTLLGACSFHGNVEMGERVTRKIL-------EMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNA 322 (331)
Q Consensus 253 ~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (331)
. .|+...+ .......|+...+ ..+..+. +..|..+..|..++..+.+.|++++|...|++..+.++
T Consensus 194 ~~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 194 KLDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hCCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3 2332222 2223345555544 3444444 45566668899999999999999999999999887664
No 62
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.50 E-value=4.1e-11 Score=88.14 Aligned_cols=201 Identities=12% Similarity=-0.020 Sum_probs=128.4
Q ss_pred HHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHH
Q 048799 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFA 164 (331)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 164 (331)
+...|...|...|+...|..-++++++..+. +..+|..+...|-+.|+.+.|.+.|+++.+..| +....|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs--~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS--YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 3445556666677777777777776666433 566666677777777777777777777766654 4556666777777
Q ss_pred ccCChHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHH
Q 048799 165 MHGMGKEAVENFERMQKVVL-KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243 (331)
Q Consensus 165 ~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 243 (331)
..|++++|...|++....-. .--..||..+.-+..+.|+++.|...|++..+. .+-.......+.+...+.|++..|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHH
Confidence 77777777777776665421 112356666666666777777777777776653 222445556666666777777777
Q ss_pred HHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCC
Q 048799 244 EKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 290 (331)
Q Consensus 244 ~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 290 (331)
..+++..... .++..+...-|..-...|+.+.+-+.=..+.+.-|.+
T Consensus 193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 7777666555 4555555555666666677766666666666666655
No 63
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=3.4e-11 Score=96.31 Aligned_cols=243 Identities=16% Similarity=0.143 Sum_probs=189.0
Q ss_pred HHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcc
Q 048799 39 LFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF 118 (331)
Q Consensus 39 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 118 (331)
++-+....+..+|..+|.++++-...++|.+++++. .....+.+..+||.++.+-+-..+ .++..+|+.....|
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~-~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~P- 271 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEH-RAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTP- 271 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHH-HHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCC-
Confidence 444444456789999999999999999999999998 555557899999999987643332 78899999999999
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHH----HHHHhhhc--CCcHHHHHHHHHHHHccCChHH-HHHHHHHHHh----ccCC--
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALK----LFEDISVE--RKNLVSWTSIISGFAMHGMGKE-AVENFERMQK----VVLK-- 185 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~----~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~m~~----~~~~-- 185 (331)
|..++|+++.+..+.|+++.|.+ ++.+|++. .|...+|..+|..+++.++..+ +..++.++.. ..+.
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 99999999999999998877665 45555544 6888999999999999888754 4455555443 2222
Q ss_pred -C-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhc---CCCCc---HhhHHHHHHHHHhcCCHHHHHHHHhhcccC--Cc
Q 048799 186 -P-NRVTFLSVLNACSHGGLVEEGLKFFDKMVEEC---EVLPD---IKHYGCLIDMLGRAGRLEQAEKVASGIPSE--IT 255 (331)
Q Consensus 186 -p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p 255 (331)
| +...|...+..|.+..+.+-|.++..-..... -+.|+ ..-|..+..+.|+....+.-..+|+.+... .|
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p 431 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFP 431 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecC
Confidence 3 44567778888889999999998887775431 12233 234566777888999999999999999988 88
Q ss_pred cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh
Q 048799 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEME 287 (331)
Q Consensus 256 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 287 (331)
+..+-..++++....|.++-.-+++..+...+
T Consensus 432 ~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 432 HSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred CchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 88888889999999999998888888887643
No 64
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=3e-11 Score=97.38 Aligned_cols=187 Identities=12% Similarity=0.028 Sum_probs=144.9
Q ss_pred HhcCCHhHHHHHHHHhhhcCCc-HHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHH
Q 048799 131 AKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209 (331)
Q Consensus 131 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 209 (331)
...|++++|.+.|+++.....+ ..+...+.-.+-..|+.++|++.|-++..- +..+......+...|....+..+|++
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 3468899999999988755332 233333444567789999999999887542 33466677778888988999999999
Q ss_pred HHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc
Q 048799 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288 (331)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 288 (331)
++.+... -++.|+.+.+.|...|-+.|+-..|.+.+-+--.- +-+..+..-|..-|....-+++++.+|+++.-+.|
T Consensus 580 ~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 580 LLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 9988764 45558899999999999999999999987665555 44677877788888888888999999999988888
Q ss_pred CCCccHHHHHHHHhhhccCcchHHHHHHHhhc
Q 048799 289 GYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320 (331)
Q Consensus 289 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (331)
+.......++..+.+.|++.+|.++++.+..+
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 87444445566778899999999999887543
No 65
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.48 E-value=4.5e-11 Score=101.96 Aligned_cols=260 Identities=10% Similarity=-0.007 Sum_probs=178.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcC-
Q 048799 56 DGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG- 134 (331)
Q Consensus 56 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 134 (331)
..+...|++++|++.+++- . ..+.............+.+.|+.++|..++..+++.+++ +...|..+..+..-..
T Consensus 12 ~il~e~g~~~~AL~~L~~~-~-~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd--n~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKN-E-KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD--NYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhh-h-hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHhhhcc
Confidence 4467788888888888764 2 223334445566777888888888888888888888665 6666767766663332
Q ss_pred ----CHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChH-HHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHH
Q 048799 135 ----CIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGK-EAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209 (331)
Q Consensus 135 ----~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 209 (331)
+.+...++|+++...-|...+...+.-.+.....+. .+..++..+...|+++ +|..|-..|....+.+-..+
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 466777888877666565444444433333323343 3445566677777643 34555555555545555555
Q ss_pred HHHHHHHhc-------------CCCCcH--hhHHHHHHHHHhcCCHHHHHHHHhhcccCCcc-HHHHHHHHHHHhcCCch
Q 048799 210 FFDKMVEEC-------------EVLPDI--KHYGCLIDMLGRAGRLEQAEKVASGIPSEITN-VVVWRTLLGACSFHGNV 273 (331)
Q Consensus 210 ~~~~~~~~~-------------~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 273 (331)
++....... .-+|+. .++..+.+.|...|++++|.+++++++...|+ +..|..-...+-..|++
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence 555544321 113444 34456677888899999999999998888665 67888888889999999
Q ss_pred hHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhccc
Q 048799 274 EMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNA 322 (331)
Q Consensus 274 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (331)
.+|.+.++.+.++++.+-..-...+..+.+.|+.++|.+++..+...+.
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 9999999999998888766666678888899999999999888877665
No 66
>PF13041 PPR_2: PPR repeat family
Probab=99.48 E-value=1.7e-13 Score=78.52 Aligned_cols=50 Identities=28% Similarity=0.523 Sum_probs=39.3
Q ss_pred CcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhc
Q 048799 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200 (331)
Q Consensus 151 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 200 (331)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777888888888888888888888888877888888888888877764
No 67
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=3.6e-12 Score=105.26 Aligned_cols=221 Identities=13% Similarity=0.095 Sum_probs=182.8
Q ss_pred HHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChH
Q 048799 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGK 170 (331)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 170 (331)
..+.+.|++.+|.-.|+..++..+. +..+|..|.......++-..|+..+++..+.+| +..+...|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~--haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ--HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH--HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHH
Confidence 3456889999999999999999655 889999999999999999999999999998877 6788899999999999999
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHH-----------HHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCC
Q 048799 171 EAVENFERMQKVVLKPNRVTFLSVL-----------NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239 (331)
Q Consensus 171 ~a~~~~~~m~~~~~~p~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 239 (331)
.|+..+++-+....+ |..+. ..+.....+....++|-++....+..+|+.++..|.-.|--.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999999988664311 11111 11222233445566666665553656788899999999999999
Q ss_pred HHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHh
Q 048799 240 LEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVD 318 (331)
Q Consensus 240 ~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (331)
+++|.+.|+.+....| |..+||.|...++...+..+|+..|++++++.|....+...|+..|...|.+++|.+.|=...
T Consensus 446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999999998855 679999999999999999999999999999999999999999999999999999998876654
Q ss_pred h
Q 048799 319 E 319 (331)
Q Consensus 319 ~ 319 (331)
.
T Consensus 526 ~ 526 (579)
T KOG1125|consen 526 S 526 (579)
T ss_pred H
Confidence 4
No 68
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=2.4e-10 Score=92.72 Aligned_cols=311 Identities=11% Similarity=0.050 Sum_probs=208.7
Q ss_pred chhHHhhhcC--CchH-HHHHHHHHHHHHcCCHHHHHHHHhhCC--CCCchhHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 048799 4 DGSKLFDELP--ERNL-VTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDGYTRMNRSNGALALFRRMVACE 78 (331)
Q Consensus 4 ~A~~~~~~~~--~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 78 (331)
.|..+|++.+ -|.+ ..|...+.+--..|++..|.++|+.=. +|+..+|++.|+.-.+.+.++.|..++++.+.
T Consensus 125 hARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~-- 202 (677)
T KOG1915|consen 125 HARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL-- 202 (677)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--
Confidence 4445555443 1222 234444444455666777777766533 57778888888877778888888888887744
Q ss_pred CCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhc-CCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc---HH
Q 048799 79 YTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR-GFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN---LV 154 (331)
Q Consensus 79 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~ 154 (331)
+.|+..+|....+.-.+.|+...+.++|..+++. |.+..+...+.+....=.++..++.|..+|+-+...-|. ..
T Consensus 203 -~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raee 281 (677)
T KOG1915|consen 203 -VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEE 281 (677)
T ss_pred -ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHH
Confidence 4577777777777777778888888888777653 222213445555555555667778888888777666332 34
Q ss_pred HHHHHHHHHHccCChHHHHHH--------HHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHh-
Q 048799 155 SWTSIISGFAMHGMGKEAVEN--------FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIK- 225 (331)
Q Consensus 155 ~~~~l~~~~~~~~~~~~a~~~--------~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~- 225 (331)
.|..+...--+-|+.....+. |+++...+ +-|-.+|--.+..-...|+.+...++|++++. +++|-..
T Consensus 282 L~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa--nvpp~~ek 358 (677)
T KOG1915|consen 282 LYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIA--NVPPASEK 358 (677)
T ss_pred HHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc--cCCchhHH
Confidence 455555444444554333322 23333332 34666777777777788999999999999987 6777322
Q ss_pred -hHHHHH-----HH---HHhcCCHHHHHHHHhhcccCCcc-HH----HHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCC
Q 048799 226 -HYGCLI-----DM---LGRAGRLEQAEKVASGIPSEITN-VV----VWRTLLGACSFHGNVEMGERVTRKILEMERGYG 291 (331)
Q Consensus 226 -~~~~l~-----~~---~~~~g~~~~A~~~~~~~~~~~p~-~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 291 (331)
.|...| -+ -....+++.+.++|+...+..|+ .. .|.....-..++.++..|.+++-.++...|.+
T Consensus 359 r~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~- 437 (677)
T KOG1915|consen 359 RYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD- 437 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-
Confidence 222222 11 23578899999999988877454 23 34444455568889999999999999999988
Q ss_pred ccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 292 GDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 292 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
.+|...+..-.+.++++.+.+++++..+.+
T Consensus 438 KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 438 KLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 889999999999999999999999998854
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.5e-10 Score=90.97 Aligned_cols=273 Identities=10% Similarity=-0.030 Sum_probs=171.1
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCCchhH---HHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHH
Q 048799 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSW---TGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVF 91 (331)
Q Consensus 15 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 91 (331)
-|+.....+.+.+...|+.++|+..|++...-|+.+. ....-.+.+.|++++...+...+.... .-+...|..-+
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV~~ 307 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV--KYTASHWFVHA 307 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh--hcchhhhhhhh
Confidence 3555666666777777777777777776553333221 122223455666666666665552211 12223344444
Q ss_pred HHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChH
Q 048799 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGK 170 (331)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 170 (331)
......++++.|+.+-++.++.... +...+..-..++...|+.++|.-.|+.+....| +...|..|+.+|...|.+.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r--~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPR--NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcc--cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 4455667777777777777766433 555665556677777777777777777766654 5677777888777777777
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHH-HHHh-ccCChHHHHHHHHHHHHhcCCCCc-HhhHHHHHHHHHhcCCHHHHHHHH
Q 048799 171 EAVENFERMQKVVLKPNRVTFLSVL-NACS-HGGLVEEGLKFFDKMVEECEVLPD-IKHYGCLIDMLGRAGRLEQAEKVA 247 (331)
Q Consensus 171 ~a~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 247 (331)
+|.-+-+..... .+.+..+...+. ..|. ...--++|.++++...+ +.|+ ....+.+...+...|+.+++..++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 777666554332 233444444332 2222 22234677777776653 3454 345566667777788888888888
Q ss_pred hhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHH
Q 048799 248 SGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV 295 (331)
Q Consensus 248 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 295 (331)
++.....||....+.|.+.+...+.+++|.+.|..+++.+|.+..+..
T Consensus 462 e~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~ 509 (564)
T KOG1174|consen 462 EKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLR 509 (564)
T ss_pred HHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHH
Confidence 887777788888888888888888888888888888888887744433
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.43 E-value=2.5e-10 Score=84.08 Aligned_cols=206 Identities=11% Similarity=0.003 Sum_probs=168.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHH
Q 048799 50 SWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDT 129 (331)
Q Consensus 50 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (331)
+...|...|.+.|++..|..-+++.++.. +.+..++..+...|.+.|+.+.|.+.|+++++..+. +..+.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~--~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN--NGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC--ccchhhhhhHH
Confidence 56677888999999999999999985532 244668888999999999999999999999998655 88899999999
Q ss_pred HHhcCCHhHHHHHHHHhhhcC---CcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHH
Q 048799 130 YAKCGCIFSALKLFEDISVER---KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEE 206 (331)
Q Consensus 130 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 206 (331)
+|..|++++|...|+++...+ ....+|..+.-+..+.|+.+.|...|++.++.. +-...+...+.....+.|++-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchH
Confidence 999999999999999997662 246788888888889999999999999988753 2234567778888889999999
Q ss_pred HHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHH
Q 048799 207 GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262 (331)
Q Consensus 207 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 262 (331)
|..+++..... ..++..+.-..|+.-.+.|+.+.+.++=..+....|...-|..
T Consensus 192 Ar~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 192 ARLYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQT 245 (250)
T ss_pred HHHHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHh
Confidence 99999998775 3478888888888888899999888877776666665554443
No 71
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.40 E-value=1.3e-10 Score=92.52 Aligned_cols=249 Identities=12% Similarity=0.042 Sum_probs=166.6
Q ss_pred HHHcCCHHHHHHHHhhCCC--C--CchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhH
Q 048799 27 LVKWGELEYARSLFEEMPC--R--NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRN 102 (331)
Q Consensus 27 ~~~~g~~~~A~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 102 (331)
+.-.|++..++.-.+ ... + +......+.+++...|+++.++. ++ ... ..|.......+...+...++-+.
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei-~~~-~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EI-KKS-SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS--TT-SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---Hh-ccC-CChhHHHHHHHHHHHhCccchHH
Confidence 344688888886554 221 1 23345567788888998776543 33 222 25666666666665555455666
Q ss_pred HHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 048799 103 CQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKV 182 (331)
Q Consensus 103 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 182 (331)
+..-++..........+..+.......+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66666555544433324444444556677789999999887653 45666677888899999999999999999874
Q ss_pred cCCCCHHHHHHHHHHHh----ccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccH
Q 048799 183 VLKPNRVTFLSVLNACS----HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNV 257 (331)
Q Consensus 183 ~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~ 257 (331)
..|. +...+..++. ....+.+|..+|+++.+ ...+++.+.+.+.-++...|++++|.+++.++... +.++
T Consensus 161 --~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 161 --DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp --SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred --CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 3443 3333444433 23468999999999876 45678888899999999999999999999998777 4466
Q ss_pred HHHHHHHHHHhcCCch-hHHHHHHHHHHHhhcCC
Q 048799 258 VVWRTLLGACSFHGNV-EMGERVTRKILEMERGY 290 (331)
Q Consensus 258 ~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~ 290 (331)
.+...++.+....|+. +.+.+.+.++....|++
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 7777788777777777 66788888888888876
No 72
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.39 E-value=1.7e-09 Score=92.54 Aligned_cols=288 Identities=12% Similarity=0.029 Sum_probs=192.2
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCC--CC-chhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhc--
Q 048799 23 MITGLVKWGELEYARSLFEEMPC--RN-VVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQN-- 97 (331)
Q Consensus 23 l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 97 (331)
....+...|++++|++.++.-.. .| ..........+.+.|+.++|..+|..++..+ |.+...|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 44667889999999999988653 34 3456677788999999999999999995532 24444555555555222
Q ss_pred ---CchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhH-HHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHH
Q 048799 98 ---GDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFS-ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAV 173 (331)
Q Consensus 98 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 173 (331)
.+.+...++++++.+.-+.. + +...+.-.+.....+.. +..++..+.. ..-+.+|+.+-..|......+-..
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s-~--~~~rl~L~~~~g~~F~~~~~~yl~~~l~-KgvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRS-D--APRRLPLDFLEGDEFKERLDEYLRPQLR-KGVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccc-c--chhHhhcccCCHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHcChhHHHHHH
Confidence 35677788888877664322 1 11112111222122322 2233333332 223456666666676555555555
Q ss_pred HHHHHHHhc----c----------CCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCC-cHhhHHHHHHHHHh
Q 048799 174 ENFERMQKV----V----------LKPNR--VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP-DIKHYGCLIDMLGR 236 (331)
Q Consensus 174 ~~~~~m~~~----~----------~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 236 (331)
+++...... + -+|+. .++..+...|...|++++|++++++.++. .| .+..|..-.+.|-.
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh 240 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHH
Confidence 666554432 1 12344 24566677788999999999999999975 45 47788888999999
Q ss_pred cCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCC-c------cH--HHHHHHHhhhcc
Q 048799 237 AGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG-G------DY--VLMYNILAGVWR 306 (331)
Q Consensus 237 ~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~------~~--~~l~~~~~~~g~ 306 (331)
.|++.+|.+.++.+... .-|...-+..+..+.+.|++++|.+.+....+.+.+.. . .| ...+.+|.+.|+
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999887 44667777778888899999999999988876331111 1 12 346788999999
Q ss_pred CcchHHHHHHHhh
Q 048799 307 YGDAERLRRVVDE 319 (331)
Q Consensus 307 ~~~a~~~~~~~~~ 319 (331)
+..|++.+..+.+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877655
No 73
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.39 E-value=3e-09 Score=91.20 Aligned_cols=303 Identities=13% Similarity=0.055 Sum_probs=192.4
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHH
Q 048799 15 RNLVTWNVMITGLVKWGELEYARSLFEEMPC---RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVF 91 (331)
Q Consensus 15 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 91 (331)
-|...|..+.-++.+.|+++.+.+.|++... .....|+.+...|...|.-..|+.+++........++|...+...-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 3566677777777777777777777776542 2334566666666666666666666665533222222222222222
Q ss_pred HHHh-hcCchh--------------------------------------------------HHHHHHhhhhhcCCCcchh
Q 048799 92 PAIW-QNGDVR--------------------------------------------------NCQLIHGYGEKRGFNAFHI 120 (331)
Q Consensus 92 ~~~~-~~~~~~--------------------------------------------------~a~~~~~~~~~~~~~~~~~ 120 (331)
..|. +.+..+ ++.+.++++++.++. |+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~--dp 478 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT--DP 478 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC--Cc
Confidence 2221 122222 344445555544333 44
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhhcC--CcHHHHHHHHHHHHccCChHHHHHHHHHHHhc-cC-------------
Q 048799 121 HVSNCLIDTYAKCGCIFSALKLFEDISVER--KNLVSWTSIISGFAMHGMGKEAVENFERMQKV-VL------------- 184 (331)
Q Consensus 121 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~------------- 184 (331)
.+...+.--|+..++++.|....++..... .+...|..+.-.+...+++.+|+.+.+..... |.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 444445556677777888887777776662 35667777766666677777776665543321 10
Q ss_pred ----------------------------------------------C---------------------------------
Q 048799 185 ----------------------------------------------K--------------------------------- 185 (331)
Q Consensus 185 ----------------------------------------------~--------------------------------- 185 (331)
.
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence 0
Q ss_pred ---CC------HHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-
Q 048799 186 ---PN------RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT- 255 (331)
Q Consensus 186 ---p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p- 255 (331)
|+ ...|......+.+.+..++|...+.+... ..+.....|......+...|..++|.+.|..+....|
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~ 716 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD 716 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC
Confidence 00 00011223334444555555555555543 2233555666666777888999999999998887745
Q ss_pred cHHHHHHHHHHHhcCCchhHHHH--HHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 256 NVVVWRTLLGACSFHGNVEMGER--VTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 256 ~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
++.....+..++.+.|+...|.. ++..+.+.+|.++..|..++..+.+.|+.++|.+.|....+..
T Consensus 717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 56888899999999999988888 9999999999999999999999999999999999999887754
No 74
>PF13041 PPR_2: PPR repeat family
Probab=99.39 E-value=1.3e-12 Score=74.75 Aligned_cols=50 Identities=32% Similarity=0.569 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHh
Q 048799 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236 (331)
Q Consensus 186 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 236 (331)
||..+|+.++.+|++.|++++|.++|++|.+. |++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~-g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKR-GIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999998 999999999999999874
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.2e-09 Score=85.80 Aligned_cols=297 Identities=11% Similarity=-0.053 Sum_probs=216.3
Q ss_pred hHHHHHHHHHHHH--HcCCHHHHHHHHhhCC-----CCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHH-H
Q 048799 16 NLVTWNVMITGLV--KWGELEYARSLFEEMP-----CRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEIT-I 87 (331)
Q Consensus 16 ~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~ 87 (331)
+..+....+.+++ -.++...|...+-.+. +.|+.....+...+...|+.++|+..|++... +.|+..+ .
T Consensus 193 ~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~---~dpy~i~~M 269 (564)
T KOG1174|consen 193 HFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC---ANPDNVEAM 269 (564)
T ss_pred CccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh---CChhhhhhH
Confidence 3334444454443 3444444444433222 45788889999999999999999999998832 3344322 2
Q ss_pred HHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHcc
Q 048799 88 LAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMH 166 (331)
Q Consensus 88 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 166 (331)
..-.-.+...|+.+....+...+...... +...|..-+..+...+++..|+.+-++..+..| +...|-.-...+...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~--ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKVKY--TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhhhc--chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhc
Confidence 22233345778888877777766654322 334444455667778899999999999887755 566777777888899
Q ss_pred CChHHHHHHHHHHHhccCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHH-HHHH-hcCCHHHH
Q 048799 167 GMGKEAVENFERMQKVVLKP-NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLI-DMLG-RAGRLEQA 243 (331)
Q Consensus 167 ~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A 243 (331)
+++++|.-.|+.... +.| +...|..|+.+|...|.+.+|.-+-+...+. ++.+..+...+. ..+. .-..-++|
T Consensus 348 ~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred cchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHH
Confidence 999999999999876 444 6689999999999999999999888777653 444666655553 2222 22335889
Q ss_pred HHHHhhcccCCcc-HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhccc
Q 048799 244 EKVASGIPSEITN-VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNA 322 (331)
Q Consensus 244 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (331)
.++++......|+ ....+.+...+...|..++++.++++.+...|++ .....|+..+...+.+.+|.+.|......+.
T Consensus 424 Kkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 424 KKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 9999998888676 4666777888899999999999999999988887 8899999999999999999999887765443
No 76
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.36 E-value=4.8e-09 Score=81.94 Aligned_cols=299 Identities=12% Similarity=0.083 Sum_probs=216.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCCchhHHHHH---HHHHhcCChhHHHHHHHHHHhccCCCCchH-HHHHHH
Q 048799 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGII---DGYTRMNRSNGALALFRRMVACEYTEPSEI-TILAVF 91 (331)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~ 91 (331)
++.-..-+...+.-.|++..|+.-|....+-|+..|.++. ..|...|+..-|+.-|.+.+. .+||-. .-..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhc
Confidence 3444445667777889999999999988887777776665 468889999999988888754 567754 333445
Q ss_pred HHHhhcCchhHHHHHHhhhhhcCCCcc-hhHHH------------HHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHH
Q 048799 92 PAIWQNGDVRNCQLIHGYGEKRGFNAF-HIHVS------------NCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWT 157 (331)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~ 157 (331)
..+.++|.++.|..=|+..++..+... ...++ ...+..+...|+...|+.....+.+..| +...|.
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~ 193 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ 193 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence 667899999999999999888754210 11111 2234456667899999999998887766 777888
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhH----HH----
Q 048799 158 SIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY----GC---- 229 (331)
Q Consensus 158 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~---- 229 (331)
.-..+|...|++..|+.-++...+... -+..++..+-..+...|+.+.++....+..+ +.||-... ..
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHHHH
Confidence 888899999999999988877765433 3444555566677788888888888777764 45654322 11
Q ss_pred ---H--HHHHHhcCCHHHHHHHHhhcccCCcc-----HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHH
Q 048799 230 ---L--IDMLGRAGRLEQAEKVASGIPSEITN-----VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299 (331)
Q Consensus 230 ---l--~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 299 (331)
| +....+.+++.++....+......|. ...+..+-.++...|++.+|++...++++.+|++..++..-+.
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 1 12234567777777777776666443 2344556667788899999999999999999998888888999
Q ss_pred HHhhhccCcchHHHHHHHhhcc
Q 048799 300 ILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 300 ~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
+|.....++.|+.-++...+.+
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcC
Confidence 9998889999998888876654
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.35 E-value=1.7e-08 Score=84.49 Aligned_cols=300 Identities=11% Similarity=-0.053 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhCC---CCCchh---HHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHH
Q 048799 17 LVTWNVMITGLVKWGELEYARSLFEEMP---CRNVVS---WTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90 (331)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 90 (331)
...|..+...+...|+.+.+...+.... .++... .......+...|++++|.+.+++..... |.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH-
Confidence 4567777788888888888766666543 223222 2223345678899999999999985432 233434432
Q ss_pred HHHHh----hcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHc
Q 048799 91 FPAIW----QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAM 165 (331)
Q Consensus 91 ~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 165 (331)
...+. ..+..+.+.+.+... .+..|........+...+...|++++|...+++.....| +...+..+..++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 22222 345555555555542 222332455656777889999999999999999988866 46678888899999
Q ss_pred cCChHHHHHHHHHHHhccC-CCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhH-H--HHHHHHHhcCC
Q 048799 166 HGMGKEAVENFERMQKVVL-KPNR--VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY-G--CLIDMLGRAGR 239 (331)
Q Consensus 166 ~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~ 239 (331)
.|++++|+..+++...... .|+. ..|..+...+...|++++|..++++........+..... + .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 9999999999999876432 1232 345568888999999999999999986431111222211 1 23333344454
Q ss_pred HHHHHHH---HhhcccCCc---cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcC---------CCccHHHHHHHHhhh
Q 048799 240 LEQAEKV---ASGIPSEIT---NVVVWRTLLGACSFHGNVEMGERVTRKILEMERG---------YGGDYVLMYNILAGV 304 (331)
Q Consensus 240 ~~~A~~~---~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~ 304 (331)
...+.++ ........+ ..........++...|+.+.|..+++.+...... ........+.++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3333333 111111101 1122234667788999999999999998763211 123344556677889
Q ss_pred ccCcchHHHHHHHhhcc
Q 048799 305 WRYGDAERLRRVVDERN 321 (331)
Q Consensus 305 g~~~~a~~~~~~~~~~~ 321 (331)
|++++|.+.+.......
T Consensus 321 g~~~~A~~~L~~al~~a 337 (355)
T cd05804 321 GNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999998876643
No 78
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.6e-09 Score=88.06 Aligned_cols=318 Identities=13% Similarity=0.061 Sum_probs=198.2
Q ss_pred CccchhHHhhhcC---CchHHHHHHHHHHHHHcCCHHHHHHHHhhCC--CCC-chhHHHHHHHHHhcCChhHHHHHHHHH
Q 048799 1 FLKDGSKLFDELP---ERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRN-VVSWTGIIDGYTRMNRSNGALALFRRM 74 (331)
Q Consensus 1 ~~~~A~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 74 (331)
+++.|+.+|.+.. ++|...|..-..+|.+.|++++|+.=-.+-. .|+ ...|+....++.-.|++++|+..|.+-
T Consensus 17 d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~G 96 (539)
T KOG0548|consen 17 DFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEG 96 (539)
T ss_pred cHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHH
Confidence 4567777777644 5677778888888888888888776655544 343 347888888888888888888888876
Q ss_pred HhccCCCCchHHHHHHHHHHhhcCc---------------------------------------------------hhHH
Q 048799 75 VACEYTEPSEITILAVFPAIWQNGD---------------------------------------------------VRNC 103 (331)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~~~~---------------------------------------------------~~~a 103 (331)
+.. .+.+...+..+..++..... +..+
T Consensus 97 L~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a 174 (539)
T KOG0548|consen 97 LEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKA 174 (539)
T ss_pred hhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHH
Confidence 442 23445566666666521100 0000
Q ss_pred HHHHhhh-----hhcC-------CCcc---------------------hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC
Q 048799 104 QLIHGYG-----EKRG-------FNAF---------------------HIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150 (331)
Q Consensus 104 ~~~~~~~-----~~~~-------~~~~---------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 150 (331)
...+... ...+ ..|. -..-...+++...+..+++.|.+-+.......
T Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~ 254 (539)
T KOG0548|consen 175 DGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA 254 (539)
T ss_pred HHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh
Confidence 0000000 0000 0000 00112234444445555666666666555445
Q ss_pred CcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCC--C----HHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcH
Q 048799 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP--N----RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDI 224 (331)
Q Consensus 151 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 224 (331)
.+..-++....+|...|.+..++..-.+..+.|... + ...+..+..+|.+.++++.+...|.+.... ...|+.
T Consensus 255 ~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte-~Rt~~~ 333 (539)
T KOG0548|consen 255 TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTE-HRTPDL 333 (539)
T ss_pred hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh-hcCHHH
Confidence 333334555566777777776666666655544211 1 112223344566677888888888887665 334432
Q ss_pred hhH-------------------------HHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHH
Q 048799 225 KHY-------------------------GCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGER 278 (331)
Q Consensus 225 ~~~-------------------------~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~ 278 (331)
..- ..-...+.+.|++..|.+.|.+++.. +.|...|..-.-+|.+.|.+..|++
T Consensus 334 ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~ 413 (539)
T KOG0548|consen 334 LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALK 413 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHH
Confidence 221 12234467788899999999988877 4467888888888899999999999
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 279 VTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
-.+..++++|+....|..-+.++....++++|.+.|++-.+.+
T Consensus 414 Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 414 DAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9888888888888888888888888889999988888776654
No 79
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=4.6e-09 Score=80.53 Aligned_cols=288 Identities=11% Similarity=0.055 Sum_probs=202.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC--C-CchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHH-HHHHHh
Q 048799 20 WNVMITGLVKWGELEYARSLFEEMPC--R-NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILA-VFPAIW 95 (331)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 95 (331)
+++.+..+.+..++++|++++..-.+ | +....+.|..+|-...++..|-..++.+ .. ..|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL-~q--l~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQL-GQ--LHPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--hChHHHHHHHHHHHHHH
Confidence 55677777889999999999876653 2 5567788888999999999999999998 33 3355444433 345667
Q ss_pred hcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHH
Q 048799 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 175 (331)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 175 (331)
+.+.+..|+++...+.+.. .. -......-.......+++..+..+.++.... .+..+.+.......+.|+++.|.+-
T Consensus 90 ~A~i~ADALrV~~~~~D~~-~L-~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNP-AL-HSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HhcccHHHHHHHHHhcCCH-HH-HHHHHHHHHHHhcccccCcchHHHHHhccCC-CccchhccchheeeccccHHHHHHH
Confidence 8888999999988887641 11 1111111122334578888888888877421 2344455555666789999999999
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCC-------------cHh--------hHHHHHH--
Q 048799 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP-------------DIK--------HYGCLID-- 232 (331)
Q Consensus 176 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~--------~~~~l~~-- 232 (331)
|+...+-+---....|+.-+ +..+.|+++.|.++..+++++ |++. |.. ..+.+++
T Consensus 167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 99888754333455677555 455778999999999998887 5431 111 1233333
Q ss_pred -----HHHhcCCHHHHHHHHhhcccC---CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhh
Q 048799 233 -----MLGRAGRLEQAEKVASGIPSE---ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304 (331)
Q Consensus 233 -----~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 304 (331)
.+.+.|+++.|.+.+..|... ..|+.|...+.-.= ..+++.+..+-+.-+++.+|-.+.+|..+...|++.
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhh
Confidence 356789999999999999877 55677766654332 345677777777788888998888999999999999
Q ss_pred ccCcchHHHHHH
Q 048799 305 WRYGDAERLRRV 316 (331)
Q Consensus 305 g~~~~a~~~~~~ 316 (331)
.-++.|-+++.+
T Consensus 324 eyf~lAADvLAE 335 (459)
T KOG4340|consen 324 EYFDLAADVLAE 335 (459)
T ss_pred HHHhHHHHHHhh
Confidence 999988887754
No 80
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.28 E-value=8.2e-10 Score=100.16 Aligned_cols=202 Identities=14% Similarity=0.041 Sum_probs=126.1
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc-C-----CcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHH
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVE-R-----KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL 192 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 192 (331)
+...|...+......++.++|.++++++... + .-...|.++++.-..-|.-+...++|+++.+. .-.-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 4556666666666677777777777666544 1 12344555555555556666666677666652 22234456
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc---cHHHHHHHHHHHhc
Q 048799 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT---NVVVWRTLLGACSF 269 (331)
Q Consensus 193 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~ 269 (331)
.|...|.+.+.+++|.++++.|.++++ ....+|...++.+.+.++-+.|..++.++...-| +.......+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 666666677777777777777766533 4556666666667777666777777766665522 34444555555566
Q ss_pred CCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhccccC
Q 048799 270 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALK 324 (331)
Q Consensus 270 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 324 (331)
.|+.+.+..+|+..+.-.|.....|..++..-.+.|..+.++++|++....++.+
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 6777777777777776666666667777777777777777777777766665543
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.28 E-value=2.1e-09 Score=85.68 Aligned_cols=231 Identities=14% Similarity=0.094 Sum_probs=161.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHh
Q 048799 16 NLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW 95 (331)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (331)
+......+..++...|+++.++.-...-..|.......+...+...++-+.++.-+++.+.......+..........+.
T Consensus 34 ~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 34 KLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 34455567788999999998777776666677777766665554445666777777665333222234444444456677
Q ss_pred hcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHH---HHHHHHHccCChHHH
Q 048799 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT---SIISGFAMHGMGKEA 172 (331)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a 172 (331)
..|++++|++++... . +.......+.+|.+.++++.|.+.++.|.+...|....+ +.+..+.-.+.+.+|
T Consensus 114 ~~~~~~~AL~~l~~~------~-~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A 186 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------G-SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDA 186 (290)
T ss_dssp CCCHHHHHHCCCTTT------T-CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHH
T ss_pred HcCCHHHHHHHHHcc------C-cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHH
Confidence 899999999988764 1 556667788999999999999999999987766654333 333333334579999
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCH-HHHHHHHhhcc
Q 048799 173 VENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL-EQAEKVASGIP 251 (331)
Q Consensus 173 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 251 (331)
..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+. -+-++.+...++-+....|+. +.+.+.+..+.
T Consensus 187 ~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 187 FYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 9999998654 5688899999999999999999999999998753 233677777788777778887 77888888887
Q ss_pred cCCcc
Q 048799 252 SEITN 256 (331)
Q Consensus 252 ~~~p~ 256 (331)
...|+
T Consensus 264 ~~~p~ 268 (290)
T PF04733_consen 264 QSNPN 268 (290)
T ss_dssp HHTTT
T ss_pred HhCCC
Confidence 66454
No 82
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=1.7e-09 Score=89.88 Aligned_cols=250 Identities=14% Similarity=0.048 Sum_probs=194.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCC
Q 048799 56 DGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135 (331)
Q Consensus 56 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 135 (331)
.-+.+.|++.+|.-.|+..+.+. |-+...|..|.......++-..|+..+.++++..+. +..+.-.|.-.|...|.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~--NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT--NLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc--cHHHHHHHHHHHhhhhh
Confidence 34678999999999999985543 356778999999999999999999999999998554 88999999999999999
Q ss_pred HhHHHHHHHHhhhcCCcHHHHHHH-------H--HHHHccCChHHHHHHHHHHHh-ccCCCCHHHHHHHHHHHhccCChH
Q 048799 136 IFSALKLFEDISVERKNLVSWTSI-------I--SGFAMHGMGKEAVENFERMQK-VVLKPNRVTFLSVLNACSHGGLVE 205 (331)
Q Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~l-------~--~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~ 205 (331)
-..|+..++.-....|.-. |... . ..+.....+....++|-++.. .+..+|......|.-.|--.|+++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~-~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYV-HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHHhCccch-hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999999988755432110 0000 0 122233344556666655544 444577888888888899999999
Q ss_pred HHHHHHHHHHHhcCCCC-cHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCcc-HHHHHHHHHHHhcCCchhHHHHHHHHH
Q 048799 206 EGLKFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN-VVVWRTLLGACSFHGNVEMGERVTRKI 283 (331)
Q Consensus 206 ~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 283 (331)
+|.+.|+.++. ++| |..+||.|.-.+....+.++|+..|+++.+..|. +.+...|.-+|...|.+++|.+.|-.+
T Consensus 448 raiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999985 466 7889999999999999999999999999999776 467777899999999999999999999
Q ss_pred HHhhcC-----C-----CccHHHHHHHHhhhccCcchHHH
Q 048799 284 LEMERG-----Y-----GGDYVLMYNILAGVWRYGDAERL 313 (331)
Q Consensus 284 ~~~~~~-----~-----~~~~~~l~~~~~~~g~~~~a~~~ 313 (331)
+.+.+. . ..+|.+|=.++...++.+-+..+
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 986544 1 13677777778878877755443
No 83
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.24 E-value=5e-09 Score=91.29 Aligned_cols=216 Identities=12% Similarity=0.017 Sum_probs=140.2
Q ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHhhCC----------------------------CCCchhHHHHHHHHHhcCChh
Q 048799 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMP----------------------------CRNVVSWTGIIDGYTRMNRSN 65 (331)
Q Consensus 14 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------------------------~~~~~~~~~l~~~~~~~~~~~ 65 (331)
.|+..||.++|.-||..|+.+.|- +|.-|. .|.+.+|..|..+|...||..
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hGDli 100 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHGDLI 100 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhccchH
Confidence 799999999999999999999998 777764 145568888888888888865
Q ss_pred H---HHHHHHHHH---hccCCCCchHHH--------------HHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHH
Q 048799 66 G---ALALFRRMV---ACEYTEPSEITI--------------LAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125 (331)
Q Consensus 66 ~---a~~~~~~~~---~~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 125 (331)
. +.+.+..+. ...|+..-..-+ .+++......|-++.+++++..+.-..... +...
T Consensus 101 ~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~--p~~v-- 176 (1088)
T KOG4318|consen 101 LFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNA--PFQV-- 176 (1088)
T ss_pred HHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccc--hHHH--
Confidence 4 222122210 111111001111 112222233344444444444333221111 1111
Q ss_pred HHHHHHh-cCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCCh
Q 048799 126 LIDTYAK-CGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLV 204 (331)
Q Consensus 126 l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 204 (331)
.++-... ...+++-..+.....+ .+++.+|.+++.+-...|+.+.|..++.+|.+.|++.+.+-|..|+.+ .++.
T Consensus 177 fLrqnv~~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~ 252 (1088)
T KOG4318|consen 177 FLRQNVVDNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAA 252 (1088)
T ss_pred HHHHhccCCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---Cccc
Confidence 1222221 2233343444444333 689999999999999999999999999999999999999888888765 7888
Q ss_pred HHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCC
Q 048799 205 EEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239 (331)
Q Consensus 205 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 239 (331)
..++.++.-|.+. |+.|+..|+...+..+...|.
T Consensus 253 q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 253 QVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchh
Confidence 8889999999888 999999999888777777555
No 84
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.19 E-value=1.9e-09 Score=91.93 Aligned_cols=222 Identities=11% Similarity=-0.061 Sum_probs=181.5
Q ss_pred CchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHH
Q 048799 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 161 (331)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 161 (331)
|-...-..+...+...|-...|..++++. ..|...+.+|+..|+.++|..+..+-.+.+|++..|..+.+
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGD 465 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGD 465 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhh
Confidence 33334445667778888888888888754 45667888999999999999999888877889999999999
Q ss_pred HHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHH
Q 048799 162 GFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241 (331)
Q Consensus 162 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 241 (331)
......-+++|.++.+..-.. .-..+.....+.++++++.+.|+.-.+. -+....+|-.+..+..+.+++.
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhH
Confidence 888888889999998764332 1122222334579999999999987764 2336778888888889999999
Q ss_pred HHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhc
Q 048799 242 QAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320 (331)
Q Consensus 242 ~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (331)
.|.+.|.......| +...|+.+-.+|.+.|+-.+|...+.++.+.+-.+...|.+.+....+.|.+++|.+.+.++.+.
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 99999999988855 56899999999999999999999999999988888889999999999999999999999998775
Q ss_pred cc
Q 048799 321 NA 322 (331)
Q Consensus 321 ~~ 322 (331)
..
T Consensus 617 ~~ 618 (777)
T KOG1128|consen 617 RK 618 (777)
T ss_pred hh
Confidence 43
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.19 E-value=1.6e-07 Score=78.59 Aligned_cols=269 Identities=13% Similarity=0.061 Sum_probs=173.3
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHH-HHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHH
Q 048799 48 VVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEIT-ILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126 (331)
Q Consensus 48 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 126 (331)
...|..+...+...|+.+.+...+.+........++... .......+...|++++|..++++..+..+. +...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR--DLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHH-
Confidence 346677777788888898887777776443333334322 222344567889999999999999988544 4444442
Q ss_pred HHHHH----hcCCHhHHHHHHHHhhhcCCc-HHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhcc
Q 048799 127 IDTYA----KCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHG 201 (331)
Q Consensus 127 ~~~~~----~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 201 (331)
...+. ..+..+.+.+.+.......|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 22232 345556666666553223443 3455566678889999999999999998854 33456778888899999
Q ss_pred CChHHHHHHHHHHHHhcCCCCcH--hhHHHHHHHHHhcCCHHHHHHHHhhcccCCc--c-HHHH-H--HHHHHHhcCCch
Q 048799 202 GLVEEGLKFFDKMVEECEVLPDI--KHYGCLIDMLGRAGRLEQAEKVASGIPSEIT--N-VVVW-R--TLLGACSFHGNV 273 (331)
Q Consensus 202 ~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~-~~~~-~--~l~~~~~~~g~~ 273 (331)
|++++|..++++........|+. ..|..+...+...|++++|..+++++....| . .... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 99999999999988641112332 3455788889999999999999999764423 1 1111 1 223333444544
Q ss_pred hHHHHHHHHHHHh---h-cCCCccHH--HHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 274 EMGERVTRKILEM---E-RGYGGDYV--LMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 274 ~~a~~~~~~~~~~---~-~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
..+.+. +.+... . |.....+. ..+.++...|+.++|..+++.+....
T Consensus 242 ~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 242 DVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred ChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 433333 222221 1 22222222 46667788899999999999886643
No 86
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.17 E-value=5.7e-08 Score=76.12 Aligned_cols=284 Identities=12% Similarity=0.058 Sum_probs=205.7
Q ss_pred ccchhHHhhhcCCchHHHHHHHH---HHHHHcCCHHHHHHHHhhCC--CCCchh-HHHHHHHHHhcCChhHHHHHHHHHH
Q 048799 2 LKDGSKLFDELPERNLVTWNVMI---TGLVKWGELEYARSLFEEMP--CRNVVS-WTGIIDGYTRMNRSNGALALFRRMV 75 (331)
Q Consensus 2 ~~~A~~~~~~~~~p~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~--~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~ 75 (331)
+.+|+.-|...++.|+..|.++. ..|...|+...|+.=+.... +||-.. --.-...+.++|.+++|..-|+.++
T Consensus 54 ~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl 133 (504)
T KOG0624|consen 54 LSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVL 133 (504)
T ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHH
Confidence 34566666666666666666554 56777888888877777765 455422 2233456889999999999999985
Q ss_pred hccCCCC-ch----------H--HHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHH
Q 048799 76 ACEYTEP-SE----------I--TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKL 142 (331)
Q Consensus 76 ~~~~~~~-~~----------~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 142 (331)
......- .. . .....+..+...|+...|+.....+++. .|++...+..-..+|...|+...|+.-
T Consensus 134 ~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~l~~~Rakc~i~~~e~k~AI~D 211 (504)
T KOG0624|consen 134 QHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDASLRQARAKCYIAEGEPKKAIHD 211 (504)
T ss_pred hcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 4322110 01 1 1223455567789999999999999887 666999999999999999999999998
Q ss_pred HHHhhhcC-CcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHH----HH---------HHHHhccCChHHHH
Q 048799 143 FEDISVER-KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL----SV---------LNACSHGGLVEEGL 208 (331)
Q Consensus 143 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~----~l---------~~~~~~~~~~~~a~ 208 (331)
++.+.+.. .+..++.-+-..+...|+.+.++...++.++ +.|+..... .| +....+.+++.++.
T Consensus 212 lk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cl 289 (504)
T KOG0624|consen 212 LKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECL 289 (504)
T ss_pred HHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 88886663 4667777778888899999999999998877 557764321 11 11233456777777
Q ss_pred HHHHHHHHhcCCCCc-----HhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHHHHHHHH
Q 048799 209 KFFDKMVEECEVLPD-----IKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMGERVTRK 282 (331)
Q Consensus 209 ~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 282 (331)
+-.+...+. .|. ...+..+-.++...|++.+|++...+.....| |..++.--..+|.....++.|+.-|++
T Consensus 290 e~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~ 366 (504)
T KOG0624|consen 290 EAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEK 366 (504)
T ss_pred HHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 777776654 333 22344556677788999999999999988844 478888888899999999999999999
Q ss_pred HHHhhcCCCc
Q 048799 283 ILEMERGYGG 292 (331)
Q Consensus 283 ~~~~~~~~~~ 292 (331)
+.+.++++..
T Consensus 367 A~e~n~sn~~ 376 (504)
T KOG0624|consen 367 ALELNESNTR 376 (504)
T ss_pred HHhcCcccHH
Confidence 9998887743
No 87
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.15 E-value=1.9e-07 Score=79.03 Aligned_cols=299 Identities=12% Similarity=0.090 Sum_probs=182.7
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHhhCC--CC-C----------------------------------chhHHHHHHH
Q 048799 15 RNLVTWNVMITGLVKWGELEYARSLFEEMP--CR-N----------------------------------VVSWTGIIDG 57 (331)
Q Consensus 15 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~----------------------------------~~~~~~l~~~ 57 (331)
.+.++|..+.-.+...+++++|+..|.... +| | ...|..++.+
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs 152 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVA 152 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 355677777777777777888887777654 11 1 1235555555
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCCchHHHHHH------HHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHH
Q 048799 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAV------FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYA 131 (331)
Q Consensus 58 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (331)
+.-.|++..|..+++.........|+...+... .....+.|..+.|.+.+......-.+ ....-..-...+.
T Consensus 153 ~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D--kla~~e~ka~l~~ 230 (700)
T KOG1156|consen 153 QHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD--KLAFEETKADLLM 230 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH--HHHHhhhHHHHHH
Confidence 666777777777777774333234555444332 22334566666666666554433221 2222234456778
Q ss_pred hcCCHhHHHHHHHHhhhcCCcHHHHHHHH-HHHHccCChHHHH-HHHHHHH-----------------------------
Q 048799 132 KCGCIFSALKLFEDISVERKNLVSWTSII-SGFAMHGMGKEAV-ENFERMQ----------------------------- 180 (331)
Q Consensus 132 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~-~~~~~m~----------------------------- 180 (331)
+.+++++|..++..+....||...|.... .++.+..+.-++. .+|....
T Consensus 231 kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdky 310 (700)
T KOG1156|consen 231 KLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKY 310 (700)
T ss_pred HHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHH
Confidence 88899999999998888888766655443 3333222222222 4444432
Q ss_pred -----hccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhc-----C------------CCCcHhh--HHHHHHHHHh
Q 048799 181 -----KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEEC-----E------------VLPDIKH--YGCLIDMLGR 236 (331)
Q Consensus 181 -----~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~------------~~~~~~~--~~~l~~~~~~ 236 (331)
+.|+++ ++..+...|- +.+.. .++++....+ + -+|+... +-.+++.+-+
T Consensus 311 L~~~l~Kg~p~---vf~dl~SLyk---~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~ 383 (700)
T KOG1156|consen 311 LRPLLSKGVPS---VFKDLRSLYK---DPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDK 383 (700)
T ss_pred HHHHhhcCCCc---hhhhhHHHHh---chhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHH
Confidence 222221 1222222221 11111 1333322110 1 1455444 4456788889
Q ss_pred cCCHHHHHHHHhhcccCCcc-HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHH
Q 048799 237 AGRLEQAEKVASGIPSEITN-VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315 (331)
Q Consensus 237 ~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 315 (331)
.|+++.|..+++.+....|+ +..|..-.+.+...|+++.|...++++.+++..+...-...+.-..+.++.++|.++..
T Consensus 384 ~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~s 463 (700)
T KOG1156|consen 384 LGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLS 463 (700)
T ss_pred cccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHH
Confidence 99999999999999998666 46676667889999999999999999999876553333457777888999999999998
Q ss_pred HHhhccc
Q 048799 316 VVDERNA 322 (331)
Q Consensus 316 ~~~~~~~ 322 (331)
.+...|.
T Consensus 464 kFTr~~~ 470 (700)
T KOG1156|consen 464 KFTREGF 470 (700)
T ss_pred Hhhhccc
Confidence 8877664
No 88
>PLN02789 farnesyltranstransferase
Probab=99.14 E-value=2.8e-08 Score=80.42 Aligned_cols=122 Identities=12% Similarity=-0.020 Sum_probs=51.1
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcC-chhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCC
Q 048799 57 GYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNG-DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135 (331)
Q Consensus 57 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 135 (331)
.+...++.++|+.+..+++... +-+..+|+....++...| ++++++..++++++..+. +..+|+....++.+.|+
T Consensus 46 ~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk--nyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK--NYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc--chHHhHHHHHHHHHcCc
Confidence 3344445555555555543211 112223333333333333 344555555555444332 33344433333333333
Q ss_pred H--hHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 048799 136 I--FSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKV 182 (331)
Q Consensus 136 ~--~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 182 (331)
. ++++.+++++....| +..+|+....++...|+++++++.++++++.
T Consensus 122 ~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 122 DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 1 334444444443332 3444444444444444455555555544443
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.13 E-value=6.9e-09 Score=81.37 Aligned_cols=184 Identities=10% Similarity=-0.031 Sum_probs=131.8
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcH----HHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCH--HHHH
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNL----VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR--VTFL 192 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~ 192 (331)
....+..++..+...|++++|...|+++....|+. .++..+..++...|++++|+..++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 56777888999999999999999999998776532 46778888999999999999999999875421111 2455
Q ss_pred HHHHHHhcc--------CChHHHHHHHHHHHHhcCCCCc-HhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHH
Q 048799 193 SVLNACSHG--------GLVEEGLKFFDKMVEECEVLPD-IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTL 263 (331)
Q Consensus 193 ~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l 263 (331)
.+..++... |+.++|.+.++.+.+. .|+ ...+..+.... ...... ......+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~----~~~~~~------------~~~~~~~ 172 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD----YLRNRL------------AGKELYV 172 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH----HHHHHH------------HHHHHHH
Confidence 555556544 7788999999998875 343 22332222111 011000 0112245
Q ss_pred HHHHhcCCchhHHHHHHHHHHHhhcCCC---ccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 264 LGACSFHGNVEMGERVTRKILEMERGYG---GDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 264 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
...+.+.|++++|...++.+.+..|+.+ ..+..++.++...|++++|..+++.+....
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6678899999999999999998777654 578889999999999999999988886643
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1e-07 Score=78.92 Aligned_cols=223 Identities=11% Similarity=0.060 Sum_probs=166.1
Q ss_pred HHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc-HHHHH-------H
Q 048799 87 ILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWT-------S 158 (331)
Q Consensus 87 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~-------~ 158 (331)
...+.+...+..+++.|++-+...+... . +...++....+|...|.+.+.........+.... ..-|+ .
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~-~--~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA-T--DITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh-h--hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3456777778888999999999988886 3 7788888899999999998888877776555322 22233 2
Q ss_pred HHHHHHccCChHHHHHHHHHHHhccCCCCHHHHH-------------------------HHHHHHhccCChHHHHHHHHH
Q 048799 159 IISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL-------------------------SVLNACSHGGLVEEGLKFFDK 213 (331)
Q Consensus 159 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-------------------------~l~~~~~~~~~~~~a~~~~~~ 213 (331)
+..+|.+.++++.++..|.+.......|+..+-. .=...+.+.|++..|...|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3446677789999999999877655555433211 113456688999999999999
Q ss_pred HHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCc
Q 048799 214 MVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG 292 (331)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 292 (331)
++.. . +-|...|..-.-+|.+.|.+..|++-.+...+..| ....|..=..++....++++|.+.|.+.++.+|++..
T Consensus 384 AIkr-~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e 461 (539)
T KOG0548|consen 384 AIKR-D-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAE 461 (539)
T ss_pred HHhc-C-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 9986 3 55889999999999999999999999888888734 4566777777777788999999999999999998866
Q ss_pred cHHHHHHHHhhhccCcchHHHH
Q 048799 293 DYVLMYNILAGVWRYGDAERLR 314 (331)
Q Consensus 293 ~~~~l~~~~~~~g~~~~a~~~~ 314 (331)
....+..++..........++.
T Consensus 462 ~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 462 AIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred HHHHHHHHHHHhhcCCCHHHHH
Confidence 6666666555433333333333
No 91
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.11 E-value=1.9e-08 Score=78.90 Aligned_cols=186 Identities=11% Similarity=-0.018 Sum_probs=132.9
Q ss_pred CchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCc-chhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc-H---HHH
Q 048799 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA-FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN-L---VSW 156 (331)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~---~~~ 156 (331)
.....+..+...+...|+++.|...++++.+..+.. ....++..++.++...|++++|...++++.+..|+ . .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 445678888889999999999999999998875532 12356778899999999999999999999877653 2 245
Q ss_pred HHHHHHHHcc--------CChHHHHHHHHHHHhccCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhH
Q 048799 157 TSIISGFAMH--------GMGKEAVENFERMQKVVLKPNRV-TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY 227 (331)
Q Consensus 157 ~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 227 (331)
..+..++.+. |++++|.+.|+++.... |+.. ....+.... . . ... .. ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~-~---~------~~~-~~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMD-Y---L------RNR-LA--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHH-H---H------HHH-HH--------HHH
Confidence 5666666654 78999999999998753 5432 222221110 0 0 000 00 111
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcccCCc----cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc
Q 048799 228 GCLIDMLGRAGRLEQAEKVASGIPSEIT----NVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288 (331)
Q Consensus 228 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 288 (331)
..+...+.+.|++.+|...++.+....| ....+..++.++...|++++|..+++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 2456678889999999999998877633 246788888999999999999998888776444
No 92
>PLN02789 farnesyltranstransferase
Probab=99.08 E-value=4.4e-07 Score=73.51 Aligned_cols=115 Identities=11% Similarity=0.017 Sum_probs=47.1
Q ss_pred chhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcC-CHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCCh--HHHHH
Q 048799 99 DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG-CIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMG--KEAVE 174 (331)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~--~~a~~ 174 (331)
+.++|+.+..++++..+. +..+|+....++...| ++++++..++++....| +..+|+.....+.+.|+. ++++.
T Consensus 52 ~serAL~lt~~aI~lnP~--~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 52 RSPRALDLTADVIRLNPG--NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 344444444444444322 3334443434444444 34444444444444333 233344333333333321 33444
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 048799 175 NFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVE 216 (331)
Q Consensus 175 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 216 (331)
+++++.+.. +-|...|+...-++...|+++++++.++++++
T Consensus 130 ~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 130 FTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444322 12333444444444444444445554444444
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.08 E-value=5.9e-07 Score=84.70 Aligned_cols=299 Identities=11% Similarity=-0.012 Sum_probs=192.8
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCC----CCC---c-----hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCch----H
Q 048799 22 VMITGLVKWGELEYARSLFEEMP----CRN---V-----VSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSE----I 85 (331)
Q Consensus 22 ~l~~~~~~~g~~~~A~~~~~~~~----~~~---~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~ 85 (331)
.....+...|++++|..++.... ..+ . .....+...+...|++++|...+++...... ..+. .
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~ 492 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP-LTWYYSRIV 492 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CccHHHHHH
Confidence 34455667889999888887643 111 1 1122233456678999999999988744221 1121 2
Q ss_pred HHHHHHHHHhhcCchhHHHHHHhhhhhc----CCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc-----C---C-c
Q 048799 86 TILAVFPAIWQNGDVRNCQLIHGYGEKR----GFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE-----R---K-N 152 (331)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~---~-~ 152 (331)
..+.+...+...|++++|...+.+.... |...........+...+...|++++|...+++.... . + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 3455666777899999999998887653 211112345556777888999999999998877543 1 1 1
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhcc--CCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhH-
Q 048799 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVV--LKP--NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY- 227 (331)
Q Consensus 153 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~- 227 (331)
...+..+...+...|++++|...+.+..... ..+ ....+..+...+...|+.+.|.+.+..+............+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 2334455566777899999999988875421 112 23344556667778999999999998875431111111111
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHhhcccCC-ccH----HHHHHHHHHHhcCCchhHHHHHHHHHHHhhcC------CCc
Q 048799 228 ----GCLIDMLGRAGRLEQAEKVASGIPSEI-TNV----VVWRTLLGACSFHGNVEMGERVTRKILEMERG------YGG 292 (331)
Q Consensus 228 ----~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~ 292 (331)
...+..+...|+.+.|.+++....... ... ..+..+..++...|++++|...++++.+.... ...
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 112244556899999999987765541 111 12345667788999999999999999874221 123
Q ss_pred cHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 293 DYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 293 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
+...++.++.+.|+.++|...+.+..+..
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 45667888999999999999988876643
No 94
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.07 E-value=8e-09 Score=73.82 Aligned_cols=123 Identities=8% Similarity=-0.069 Sum_probs=91.9
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC
Q 048799 174 ENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253 (331)
Q Consensus 174 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 253 (331)
.+|++..+ ..|+. +..+...+...|++++|...|+.+... -+.+...+..+..++...|++++|...|+.+...
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45555555 33443 445666777888888888888888753 2346777888888888888888888888888877
Q ss_pred -CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHh
Q 048799 254 -ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302 (331)
Q Consensus 254 -~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (331)
+.+...+..+..++...|++++|+..|+.+++..|+++..+.....+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4467888888888888888888888888888888888777766665544
No 95
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=3.3e-07 Score=76.85 Aligned_cols=144 Identities=17% Similarity=0.165 Sum_probs=89.6
Q ss_pred ChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHH--------HHHHhcCCCCcHhhHHHHHHHHHhcCC
Q 048799 168 MGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD--------KMVEECEVLPDIKHYGCLIDMLGRAGR 239 (331)
Q Consensus 168 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~ 239 (331)
.+..+.+++...-+....-.......++......|+++.|.+++. ...+. +..| .+...+...+.+.++
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~P--~~V~aiv~l~~~~~~ 432 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHLP--GTVGAIVALYYKIKD 432 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccCh--hHHHHHHHHHHhccC
Confidence 455666666555443222123444556666778888998888888 44433 3333 444556666777777
Q ss_pred HHHHHHHHhhcccC----Ccc----HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchH
Q 048799 240 LEQAEKVASGIPSE----ITN----VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311 (331)
Q Consensus 240 ~~~A~~~~~~~~~~----~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 311 (331)
-+.|..++..+... .+. ..++......-.+.|+-++|..+++++.+.+|++..+...++.+|++. +.+.|.
T Consensus 433 ~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 433 NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHH
Confidence 66666655555443 122 233333444445679999999999999998888888888888888765 445555
Q ss_pred HHHH
Q 048799 312 RLRR 315 (331)
Q Consensus 312 ~~~~ 315 (331)
.+-+
T Consensus 512 ~l~k 515 (652)
T KOG2376|consen 512 SLSK 515 (652)
T ss_pred HHhh
Confidence 5443
No 96
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.07 E-value=2.1e-08 Score=75.65 Aligned_cols=154 Identities=10% Similarity=0.079 Sum_probs=104.1
Q ss_pred HHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHH
Q 048799 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEE 206 (331)
Q Consensus 127 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 206 (331)
+-.|...|+++......+.+.. |. ..+...++.++++..+++....+ +.+...|..+...|...|++++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~--~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD--PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC--cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3457778887776555433311 11 01223566677777777766543 3566777778888888888888
Q ss_pred HHHHHHHHHHhcCCCCcHhhHHHHHHHH-HhcCC--HHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHHHHHHHH
Q 048799 207 GLKFFDKMVEECEVLPDIKHYGCLIDML-GRAGR--LEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMGERVTRK 282 (331)
Q Consensus 207 a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 282 (331)
|...|++..+. .+.+...+..+..++ ...|+ .++|.++++++....| +...+..+...+...|++++|+..|++
T Consensus 92 A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 92 ALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888887764 233667777777754 56666 4888888888877734 567777777888888888888888888
Q ss_pred HHHhhcCCCcc
Q 048799 283 ILEMERGYGGD 293 (331)
Q Consensus 283 ~~~~~~~~~~~ 293 (331)
+.+..|.+..-
T Consensus 170 aL~l~~~~~~r 180 (198)
T PRK10370 170 VLDLNSPRVNR 180 (198)
T ss_pred HHhhCCCCccH
Confidence 88877665433
No 97
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.06 E-value=1.5e-07 Score=86.05 Aligned_cols=231 Identities=11% Similarity=0.107 Sum_probs=180.6
Q ss_pred CchHHHHHHHHHHhhcCchhHHHHHHhhhhhcC-CCc--chhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHH
Q 048799 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG-FNA--FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTS 158 (331)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 158 (331)
-+...|..-|......++.++|.++.++++..= +.. .-..+|.++++.-..-|.-+...++|+++.+....-..|..
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~ 1535 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLK 1535 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHH
Confidence 445678888888889999999999999887631 111 03467888888888888888999999999766555667889
Q ss_pred HHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCC--cHhhHHHHHHHHHh
Q 048799 159 IISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP--DIKHYGCLIDMLGR 236 (331)
Q Consensus 159 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 236 (331)
|...|.+.+.+++|.++|+.|.+. ..-....|...+..+.++++-+.|..++.++.+. ++. ........++.-.+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhh
Confidence 999999999999999999999875 3356778888999999999999999999998874 333 56677778888889
Q ss_pred cCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh--cCCCc-cHHHHHHHHhhhccCcchHH
Q 048799 237 AGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEME--RGYGG-DYVLMYNILAGVWRYGDAER 312 (331)
Q Consensus 237 ~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~-~~~~l~~~~~~~g~~~~a~~ 312 (331)
.|+.+.+..+|+..... +.....|+.++..-.++|+.+.+..+|+++..+. |.... .|...+..-.+.|+-+.++.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 99999999999998877 4467899999999999999999999999999843 43333 34444544455566555544
Q ss_pred HHH
Q 048799 313 LRR 315 (331)
Q Consensus 313 ~~~ 315 (331)
+=.
T Consensus 1693 VKa 1695 (1710)
T KOG1070|consen 1693 VKA 1695 (1710)
T ss_pred HHH
Confidence 433
No 98
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.05 E-value=4.7e-08 Score=73.79 Aligned_cols=162 Identities=15% Similarity=0.084 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC-CcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 197 (331)
+..+ ..+...+...|+-+.+..+........ .+....+..+....+.|++..|+..|++.... -++|..+|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHH
Confidence 4445 556667777777777777766654333 35555666777777777888888777777543 35667777777777
Q ss_pred HhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHH
Q 048799 198 CSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMG 276 (331)
Q Consensus 198 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a 276 (331)
|.+.|+++.|..-|.+..+- .+-+....+.+.-.|.-.|+.+.|..++.......+ +..+-..+..+....|+++.|
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 144 LDQLGRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 77778888887777777753 222556667777777777778887777777766633 566667777777777777777
Q ss_pred HHHHHHHH
Q 048799 277 ERVTRKIL 284 (331)
Q Consensus 277 ~~~~~~~~ 284 (331)
..+...-.
T Consensus 222 ~~i~~~e~ 229 (257)
T COG5010 222 EDIAVQEL 229 (257)
T ss_pred Hhhccccc
Confidence 77665433
No 99
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.03 E-value=4.9e-07 Score=81.59 Aligned_cols=237 Identities=11% Similarity=-0.025 Sum_probs=154.9
Q ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHhhCC--CCCc-hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHH
Q 048799 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNV-VSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAV 90 (331)
Q Consensus 14 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 90 (331)
+.+...+..|+..+...+++++|.++.+... .|+. ..|..+...+.+.++...+..+ .+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------- 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NL---------------- 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hh----------------
Confidence 3467788899999999999999999988665 2433 3444555567777776655554 22
Q ss_pred HHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCCh
Q 048799 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMG 169 (331)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 169 (331)
+.......++.-...++..+...+. +..++..++.+|-+.|+.++|..+|+++.+..| ++.+.|.+...|... +.
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~---~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGE---NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhh---hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hH
Confidence 2222233344334444445554432 455777888999999999999999999987765 678888888888888 89
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhh
Q 048799 170 KEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249 (331)
Q Consensus 170 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 249 (331)
++|++++.+.... +...+++.++.+++.++... .+-+...+..+.+.....-. +.
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~~~-------~~- 220 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGHRE-------FT- 220 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhhhc-------cc-
Confidence 9999988887663 44556777777888777753 22233333333322211100 11
Q ss_pred cccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHh
Q 048799 250 IPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302 (331)
Q Consensus 250 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (331)
.-..++..+-..|...++++++..+++.+++.+|.+..+...++..|.
T Consensus 221 -----~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 -----RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred -----hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 123445555566677777778888888888777777677777777665
No 100
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.03 E-value=2.4e-08 Score=87.17 Aligned_cols=86 Identities=9% Similarity=-0.015 Sum_probs=67.8
Q ss_pred CCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-cCCCccHHHHHHHHhhhccCcchHHHHHH
Q 048799 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEME-RGYGGDYVLMYNILAGVWRYGDAERLRRV 316 (331)
Q Consensus 238 g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 316 (331)
..+++-..+.....+ .|++.++..++.+-...|+.+.|..++.+|.+.. |-.++.|..|+.+ .+...-+..+++.
T Consensus 186 tpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrg 261 (1088)
T KOG4318|consen 186 TPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRG 261 (1088)
T ss_pred chHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHH
Confidence 335555555555555 5899999999999999999999999999999854 6665555555555 7788888999999
Q ss_pred HhhccccCCCC
Q 048799 317 VDERNALKFPG 327 (331)
Q Consensus 317 ~~~~~~~~~~~ 327 (331)
|.+.|+.|.+.
T Consensus 262 mqe~gv~p~se 272 (1088)
T KOG4318|consen 262 MQEKGVQPGSE 272 (1088)
T ss_pred HHHhcCCCCcc
Confidence 99999988764
No 101
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.03 E-value=4.8e-07 Score=76.73 Aligned_cols=129 Identities=16% Similarity=0.141 Sum_probs=58.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccC-----CCCchHHHHHHHHHH
Q 048799 20 WNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEY-----TEPSEITILAVFPAI 94 (331)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~ 94 (331)
|...+......|-++.+.++|++..+-++..-+..+..++..+++++|-+.+...+.... -+.+...|..+-...
T Consensus 141 W~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdli 220 (835)
T KOG2047|consen 141 WDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLI 220 (835)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHH
Confidence 333333344444444455555444444444445555555666666666666655521110 011222233222222
Q ss_pred hhcCc---hhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 048799 95 WQNGD---VRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE 149 (331)
Q Consensus 95 ~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 149 (331)
++..+ --....+++.++..-.+. -...|++|++-|.+.|++++|..+|++....
T Consensus 221 s~~p~~~~slnvdaiiR~gi~rftDq-~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 221 SQNPDKVQSLNVDAIIRGGIRRFTDQ-LGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HhCcchhcccCHHHHHHhhcccCcHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 22211 111222333333222221 2356677777777777777777777666443
No 102
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.00 E-value=1.5e-06 Score=73.80 Aligned_cols=289 Identities=12% Similarity=0.072 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhCCCCCc-------hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCC--------
Q 048799 18 VTWNVMITGLVKWGELEYARSLFEEMPCRNV-------VSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP-------- 82 (331)
Q Consensus 18 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------- 82 (331)
..|..+.+.|-..|+++.|..+|++..+-+- .+|-.....-.+..+++.|++++++... -+.+|
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~-vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH-VPTNPELEYYDNS 466 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc-CCCchhhhhhcCC
Confidence 4578888999999999999999999875332 3455555556677889999999888722 11111
Q ss_pred ---------chHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc--CC
Q 048799 83 ---------SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE--RK 151 (331)
Q Consensus 83 ---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~ 151 (331)
+...|...+..--..|-++....+|+++++..+. ++......+..+-...-++++.++|++-... -|
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria--TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p 544 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA--TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP 544 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc
Confidence 1123444455555667888888999999998776 5555555666677777889999999987665 34
Q ss_pred cH-HHHHHHHHHHHc---cCChHHHHHHHHHHHhccCCCCHHHHHHHHH--HHhccCChHHHHHHHHHHHHhcCCCCc--
Q 048799 152 NL-VSWTSIISGFAM---HGMGKEAVENFERMQKVVLKPNRVTFLSVLN--ACSHGGLVEEGLKFFDKMVEECEVLPD-- 223 (331)
Q Consensus 152 ~~-~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 223 (331)
++ ..|+..+.-+.+ ....+.|..+|++.++ |++|...-+..|+- .-.+-|....|+.+++++.. ++++.
T Consensus 545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~ 621 (835)
T KOG2047|consen 545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQR 621 (835)
T ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHH
Confidence 43 467776665543 3478999999999987 67665433322322 22245888899999999876 55553
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHH---HHHHHHHhcCCchhHHHHHHHHHHHhh-cC-CCccHHHHH
Q 048799 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVW---RTLLGACSFHGNVEMGERVTRKILEME-RG-YGGDYVLMY 298 (331)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~-~~~~~~~l~ 298 (331)
..+|+..|.--...=-+.....+|+++++.-|+...- -.+...-.+.|..+.|..+|....+.. |. +...|.+.=
T Consensus 622 l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk 701 (835)
T KOG2047|consen 622 LDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWK 701 (835)
T ss_pred HHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHH
Confidence 4577777765444444555677777777765654433 333445678899999999999888854 43 334566666
Q ss_pred HHHhhhccCcchHH
Q 048799 299 NILAGVWRYGDAER 312 (331)
Q Consensus 299 ~~~~~~g~~~~a~~ 312 (331)
..-.+.|+-+...+
T Consensus 702 ~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 702 EFEVRHGNEDTYKE 715 (835)
T ss_pred HHHHhcCCHHHHHH
Confidence 66677777444433
No 103
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.00 E-value=7.2e-07 Score=67.54 Aligned_cols=160 Identities=12% Similarity=0.076 Sum_probs=129.8
Q ss_pred HHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC-CcHHHHHHHHHHHHcc
Q 048799 88 LAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER-KNLVSWTSIISGFAMH 166 (331)
Q Consensus 88 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 166 (331)
..+-..+...|+-+....+.......... +......++....+.|++..|...|+++.... +|..+|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~--d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPK--DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcc--cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 66677778888888888887775544332 66677778999999999999999999998774 5789999999999999
Q ss_pred CChHHHHHHHHHHHhccCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHH
Q 048799 167 GMGKEAVENFERMQKVVLKP-NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245 (331)
Q Consensus 167 ~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 245 (331)
|+.+.|..-|.+..+. .| +...++.+.-.+.-.|+++.|..++...... -.-|..+-..+.......|++++|.+
T Consensus 148 Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 148 GRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred cChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHh
Confidence 9999999999998874 34 4566788888888899999999999998764 23377788888888899999999999
Q ss_pred HHhhcccC
Q 048799 246 VASGIPSE 253 (331)
Q Consensus 246 ~~~~~~~~ 253 (331)
+...-...
T Consensus 224 i~~~e~~~ 231 (257)
T COG5010 224 IAVQELLS 231 (257)
T ss_pred hccccccc
Confidence 87765544
No 104
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=1.7e-06 Score=68.37 Aligned_cols=52 Identities=8% Similarity=-0.023 Sum_probs=36.0
Q ss_pred HHHHHHHcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChhHHHHHHHHH
Q 048799 23 MITGLVKWGELEYARSLFEEMP---CRNVVSWTGIIDGYTRMNRSNGALALFRRM 74 (331)
Q Consensus 23 l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 74 (331)
+..++.+.|++++|...|..+. .++...+-.|.-++.-.|.+.+|.++-.+.
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 4566788899999998888765 245555666666666667777777665554
No 105
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.99 E-value=9.2e-09 Score=73.50 Aligned_cols=109 Identities=9% Similarity=-0.106 Sum_probs=95.5
Q ss_pred HHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHh
Q 048799 208 LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEM 286 (331)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 286 (331)
+.++++..+. .|+ .+..+...+...|++++|...|+.+... +.+...|..+..++...|++++|...|+++.+.
T Consensus 13 ~~~~~~al~~---~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV---DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc---CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4566666643 454 3556788899999999999999999888 557899999999999999999999999999999
Q ss_pred hcCCCccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 287 ERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
+|+++..+..++.++...|+.++|...++...+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999987754
No 106
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=4.2e-06 Score=70.47 Aligned_cols=97 Identities=10% Similarity=-0.101 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHh--------hcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHHh----hcCC--
Q 048799 225 KHYGCLIDMLGRAGRLEQAEKVAS--------GIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM----ERGY-- 290 (331)
Q Consensus 225 ~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-- 290 (331)
.+.-.+++.....|+++.|.+++. .+.+..-.+.+...++..+.+.++-+.|..++.++... .+..
T Consensus 377 ~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~ 456 (652)
T KOG2376|consen 377 VVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIA 456 (652)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchH
Confidence 444566677788899999998888 33333334566666777788888888888888888762 1222
Q ss_pred -CccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 291 -GGDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 291 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
...+..++..-.+.|+.++|..+++++.+.+
T Consensus 457 l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 457 LLSLMREAAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred HHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence 1234444555566799999999999987743
No 107
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=3.5e-07 Score=72.17 Aligned_cols=130 Identities=10% Similarity=0.077 Sum_probs=78.4
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhH-HHHHHHHHh
Q 048799 158 SIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY-GCLIDMLGR 236 (331)
Q Consensus 158 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~ 236 (331)
.+.+.+.-..++++++..++.....=...|.+.| .+..+++..|++.+|+++|-++... .++ |..+| ..|.++|.+
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHHh
Confidence 3444444455566666666655443222233333 3667777778888888888776532 333 44444 445677788
Q ss_pred cCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCC
Q 048799 237 AGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 290 (331)
Q Consensus 237 ~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 290 (331)
.++++-|..++-++............+.+-|.+.+++--|.+.|+.+..++|..
T Consensus 441 nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred cCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 888888877777665431122334444566777788877888888777776654
No 108
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=6e-07 Score=68.02 Aligned_cols=247 Identities=12% Similarity=0.047 Sum_probs=128.8
Q ss_pred HcCCHHHHHHHHhhCC-C-CCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHH-
Q 048799 29 KWGELEYARSLFEEMP-C-RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQL- 105 (331)
Q Consensus 29 ~~g~~~~A~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~- 105 (331)
-.|++..++..-.... . .+...-..+.++|...|.+....+-...- . .|....+..+.......++.+.-..
T Consensus 20 Y~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~----~-~~~lqAvr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 20 YLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEG----K-ATPLQAVRLLAEYLELESNKKSILAS 94 (299)
T ss_pred HhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccccccc----c-CChHHHHHHHHHHhhCcchhHHHHHH
Confidence 3466666555444332 2 23333444556666666665544333221 1 2333344444444433444333333
Q ss_pred HHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCC
Q 048799 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185 (331)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 185 (331)
+.+.+....... +......-+..|++.|++++|++..... .+......=+..+.+..+.+-|.+.+++|.+-
T Consensus 95 l~E~~a~~~~~s-n~i~~l~aa~i~~~~~~~deAl~~~~~~----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--- 166 (299)
T KOG3081|consen 95 LYELVADSTDGS-NLIDLLLAAIIYMHDGDFDEALKALHLG----ENLEAAALNVQILLKMHRFDLAEKELKKMQQI--- 166 (299)
T ss_pred HHHHHHhhccch-hHHHHHHhhHHhhcCCChHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 333333333322 3233333445667777777777776652 22233333334455566677777777777652
Q ss_pred CCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHH
Q 048799 186 PNRVTFLSVLNACSH----GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVW 260 (331)
Q Consensus 186 p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~ 260 (331)
.+..|.+.|..++.+ .+.+.+|.-+|++|.+ ..+|+..+.+...-++...|++++|..+++.+..+ ..++.+.
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 344555555554442 3456777777777764 35667777777777777777777777777777666 3445555
Q ss_pred HHHHHHHhcCCch-hHHHHHHHHHHHhhcCC
Q 048799 261 RTLLGACSFHGNV-EMGERVTRKILEMERGY 290 (331)
Q Consensus 261 ~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~ 290 (331)
..++-+-...|.. +-..+.+.++....|.+
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 5554444444443 33445555555555554
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.98 E-value=1.2e-07 Score=81.37 Aligned_cols=186 Identities=13% Similarity=0.098 Sum_probs=156.4
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 198 (331)
-...-..+...+...|-...|..+|++. ..|.-+|.+|+..|+..+|..+..+..+ -+|++..|..+.+..
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erl-------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERL-------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhH-------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 4455567888999999999999999986 5688888999999999999999988777 568999999888887
Q ss_pred hccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHH
Q 048799 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGE 277 (331)
Q Consensus 199 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~ 277 (331)
....-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+. +....+|-.+..+..+.++++.|.
T Consensus 468 ~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 7777788888888765432 2222223334579999999999987777 446789999999999999999999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 278 RVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
+.|.....++|++...|+++..+|.+.|+..+|...+++..+.+
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999988766
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.98 E-value=8.3e-08 Score=72.43 Aligned_cols=117 Identities=9% Similarity=0.027 Sum_probs=58.8
Q ss_pred cCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHH-HhcCC--Hh
Q 048799 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTY-AKCGC--IF 137 (331)
Q Consensus 61 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~ 137 (331)
.++.+++...++..+..+ +.|...|..+...+...|+++.|...|+++.+..+. +..++..+..++ ...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~--~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE--NAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCcH
Confidence 344444554454442221 244445555555555555555555555555555433 444555555442 34444 35
Q ss_pred HHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 048799 138 SALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQK 181 (331)
Q Consensus 138 ~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 181 (331)
+|.+++++.....| +..++..+...+.+.|++++|+..++++.+
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555444 344555555555555555555555555544
No 111
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.3e-06 Score=66.20 Aligned_cols=246 Identities=10% Similarity=0.005 Sum_probs=163.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCC
Q 048799 56 DGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135 (331)
Q Consensus 56 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 135 (331)
+-+.-.|.+..++..-... . +.+.+...-.-+.++|...|++.....-.. ... .+ .......+......-++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~-~--~~~~~~e~d~y~~raylAlg~~~~~~~eI~---~~~-~~-~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKF-S--SSKTDVELDVYMYRAYLALGQYQIVISEIK---EGK-AT-PLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHhhHHHHHHHHHHhh-c--cccchhHHHHHHHHHHHHcccccccccccc---ccc-CC-hHHHHHHHHHHhhCcch
Confidence 4455567787777666554 2 222444455556777877777655443322 222 33 44444444444444555
Q ss_pred HhHHHH-HHHHhhhcCC--cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 048799 136 IFSALK-LFEDISVERK--NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212 (331)
Q Consensus 136 ~~~A~~-~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 212 (331)
.++-+. +.+.+..... +......-...|+..+++++|++...... +......=+..+.+..+++-|.+.++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554443 3444433322 22333333456889999999999987622 22222223344567788999999999
Q ss_pred HHHHhcCCCCcHhhHHHHHHHHHh----cCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh
Q 048799 213 KMVEECEVLPDIKHYGCLIDMLGR----AGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEME 287 (331)
Q Consensus 213 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 287 (331)
+|.+- .+..+.+.|.+++.+ .+.+.+|.-+|+++.++ .|++.+.+....++...|++++|..+++.++..+
T Consensus 162 ~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 99763 356677777777654 46789999999999997 8899999999999999999999999999999999
Q ss_pred cCCCccHHHHHHHHhhhccCcchH-HHHHHHhh
Q 048799 288 RGYGGDYVLMYNILAGVWRYGDAE-RLRRVVDE 319 (331)
Q Consensus 288 ~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~ 319 (331)
++++.+...++..-...|...++. +.+.+.+.
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 999888888888888888775543 44444433
No 112
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=4.6e-07 Score=80.65 Aligned_cols=238 Identities=13% Similarity=0.075 Sum_probs=165.2
Q ss_pred CCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhh
Q 048799 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYG 110 (331)
Q Consensus 31 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 110 (331)
+++|+|.+.-++.. .+..|..+..+-.+.|.+.+|++-|-+. .|+..|..++....+.|.+++-..++..+
T Consensus 1089 ~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred hhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 44444444444443 3456899999999999999999888665 56778999999999999999999999888
Q ss_pred hhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHH
Q 048799 111 EKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVT 190 (331)
Q Consensus 111 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 190 (331)
.+...+| .. =+.|+-+|++.+++.+.+++.. .|+......+..-|...|.++.|.-+|.... -
T Consensus 1160 Rkk~~E~-~i--d~eLi~AyAkt~rl~elE~fi~-----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N 1222 (1666)
T KOG0985|consen 1160 RKKVREP-YI--DSELIFAYAKTNRLTELEEFIA-----GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------N 1222 (1666)
T ss_pred HHhhcCc-cc--hHHHHHHHHHhchHHHHHHHhc-----CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------h
Confidence 8876665 33 3578889999999888776653 6777777778888888888888877775432 3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcC
Q 048799 191 FLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270 (331)
Q Consensus 191 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~ 270 (331)
|..|...+...|++..|.+.-+++ .+..+|..+-.+|...+.+.-|.-.=-.+. ....-..-++.-|-..
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQiCGL~ii---vhadeLeeli~~Yq~r 1292 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLAQICGLNII---VHADELEELIEYYQDR 1292 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHHHhcCceEE---EehHhHHHHHHHHHhc
Confidence 666666677777777776544333 255677777666766666555433211111 2344455667777777
Q ss_pred CchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhh
Q 048799 271 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304 (331)
Q Consensus 271 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 304 (331)
|.+++.+.+++..+.+...+...|..|+..|.+.
T Consensus 1293 GyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1293 GYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred CcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 7777777777777766666656666666666654
No 113
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.97 E-value=4.7e-07 Score=76.74 Aligned_cols=298 Identities=12% Similarity=0.027 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCC---CchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHh
Q 048799 19 TWNVMITGLVKWGELEYARSLFEEMPCR---NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIW 95 (331)
Q Consensus 19 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (331)
.|..++..| ..+++...+.+.+.+.+. ...+.....-.+...|+-++|....+..++ + -.-+.+.|..+.-.+.
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr-~-d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR-N-DLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc-c-CcccchhHHHHHHHHh
Confidence 344444444 456666666665555432 223444444456677888888887776632 2 2355667777777777
Q ss_pred hcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHH
Q 048799 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVE 174 (331)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 174 (331)
..+++++|+..|..+...+.+ |...+.-+.-.-.+.|+++.....-.+..+..| ....|..++.++.-.|++..|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~d--N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKD--NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888777554 777777777777777787777777766666655 35567777777777888888888
Q ss_pred HHHHHHhcc-CCCCHHHHHHHHH------HHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHH
Q 048799 175 NFERMQKVV-LKPNRVTFLSVLN------ACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247 (331)
Q Consensus 175 ~~~~m~~~~-~~p~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 247 (331)
+++...+.. -.|+...|..... ...+.|..+.|.+.+..-... +......-..-...+.+.|++++|..++
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 887776653 3466655543332 233566667776666655432 2222223334455677788888888888
Q ss_pred hhcccCCccHHHHHH-HHHHHhcCCchhHHH-HHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhcccc
Q 048799 248 SGIPSEITNVVVWRT-LLGACSFHGNVEMGE-RVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNAL 323 (331)
Q Consensus 248 ~~~~~~~p~~~~~~~-l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (331)
..+....||..-|.. +..++.+..+.-++. .+|....+.-|........-...+....-.+....++..+.++|++
T Consensus 243 ~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 243 RRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 887777565544443 344443222323333 5555555444443222222222222222333344555556666654
No 114
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.95 E-value=8e-08 Score=85.04 Aligned_cols=161 Identities=12% Similarity=0.039 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHH
Q 048799 18 VTWNVMITGLVKWGELEYARSLFEEMPC---RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAI 94 (331)
Q Consensus 18 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (331)
..|..|...|+...+..+|...|+..-+ .+...+..+...|+...+++.|..+.-..-+......-...|..+.-.+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 5688888888888888888888888764 3455677888888999999888887443311111111122333344456
Q ss_pred hhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHH-HHHHHHHHHHccCChHHHH
Q 048799 95 WQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV-SWTSIISGFAMHGMGKEAV 173 (331)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~ 173 (331)
...++..+|..-|+-.....+. |...|..++.+|.++|++..|.++|.++...+|+.. .-.-....-+..|.+++++
T Consensus 573 Lea~n~h~aV~~fQsALR~dPk--D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPK--DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCch--hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 6778888888888877776443 888888888888888888888888888876666432 2112222345567777777
Q ss_pred HHHHHHH
Q 048799 174 ENFERMQ 180 (331)
Q Consensus 174 ~~~~~m~ 180 (331)
..+....
T Consensus 651 d~l~~ii 657 (1238)
T KOG1127|consen 651 DALGLII 657 (1238)
T ss_pred HHHHHHH
Confidence 7666554
No 115
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.94 E-value=4.1e-06 Score=79.12 Aligned_cols=294 Identities=14% Similarity=0.050 Sum_probs=184.7
Q ss_pred HHHHcCCHHHHHHHHhhCCC----CCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCC-----CCch--HHHHHHHHHH
Q 048799 26 GLVKWGELEYARSLFEEMPC----RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT-----EPSE--ITILAVFPAI 94 (331)
Q Consensus 26 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~--~~~~~l~~~~ 94 (331)
.....|+++.+..+++.++. .+..........+...|+++++...+......... .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 44556788887777777641 22333344455567789999999988876322111 1111 1222233455
Q ss_pred hhcCchhHHHHHHhhhhhcCCCcch----hHHHHHHHHHHHhcCCHhHHHHHHHHhhhc-----CCc--HHHHHHHHHHH
Q 048799 95 WQNGDVRNCQLIHGYGEKRGFNAFH----IHVSNCLIDTYAKCGCIFSALKLFEDISVE-----RKN--LVSWTSIISGF 163 (331)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~--~~~~~~l~~~~ 163 (331)
...|++++|...+++..+..... + ....+.+...+...|++++|...+++.... .+. ..++..+...+
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLT-WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 67899999999999877642221 2 134456677788899999999999887643 111 23455666778
Q ss_pred HccCChHHHHHHHHHHHhc----cCC--C-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhcC-CCC--cHhhHHHHHHH
Q 048799 164 AMHGMGKEAVENFERMQKV----VLK--P-NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECE-VLP--DIKHYGCLIDM 233 (331)
Q Consensus 164 ~~~~~~~~a~~~~~~m~~~----~~~--p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~~l~~~ 233 (331)
...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+...... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999998876552 211 1 223344555667778999999999888765311 112 23344556667
Q ss_pred HHhcCCHHHHHHHHhhcccC---CccHHHH-----HHHHHHHhcCCchhHHHHHHHHHHHhhcCCCcc----HHHHHHHH
Q 048799 234 LGRAGRLEQAEKVASGIPSE---ITNVVVW-----RTLLGACSFHGNVEMGERVTRKILEMERGYGGD----YVLMYNIL 301 (331)
Q Consensus 234 ~~~~g~~~~A~~~~~~~~~~---~p~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~l~~~~ 301 (331)
+...|+.++|.+.+..+... ......+ ...+..+...|+.+.|...+.......+..... ...++.++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 88899999999888877432 1111111 111233455788888888877655422221111 34677788
Q ss_pred hhhccCcchHHHHHHHhhc
Q 048799 302 AGVWRYGDAERLRRVVDER 320 (331)
Q Consensus 302 ~~~g~~~~a~~~~~~~~~~ 320 (331)
...|++++|...+++....
T Consensus 702 ~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 702 ILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8999999999999887654
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.93 E-value=3.2e-07 Score=81.77 Aligned_cols=134 Identities=10% Similarity=0.053 Sum_probs=106.5
Q ss_pred CcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHH
Q 048799 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR-VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC 229 (331)
Q Consensus 151 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 229 (331)
.++..+..|.....+.|++++|..+++...+ ..|+. .....+...+.+.+++++|...+++.... -+-+......
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 3577888888888888999999999988887 45654 45666777888889999999888888863 2335667777
Q ss_pred HHHHHHhcCCHHHHHHHHhhcccCCcc-HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc
Q 048799 230 LIDMLGRAGRLEQAEKVASGIPSEITN-VVVWRTLLGACSFHGNVEMGERVTRKILEMER 288 (331)
Q Consensus 230 l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 288 (331)
+..++.+.|++++|..+|+++....|+ ..++..+..++...|+.++|...|+++.+...
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 788888899999999999988866444 68888888888888999999999999887543
No 117
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.89 E-value=6.2e-06 Score=71.59 Aligned_cols=255 Identities=13% Similarity=0.044 Sum_probs=166.7
Q ss_pred HHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhh
Q 048799 33 LEYARSLFEEMPC---RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGY 109 (331)
Q Consensus 33 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 109 (331)
..++++.+++..+ .|..+...+.--|+..++.+.|.+..++...- +...+...|..+..++...+++.+|+.+.+.
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l-~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALAL-NRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 4456666666642 23333333444467777888888888877443 2346677777777777888888888887776
Q ss_pred hhhcCCC-c-----------------chhHHHHHHHHHHHh-----------------------cCCHhHHHHHHHHhhh
Q 048799 110 GEKRGFN-A-----------------FHIHVSNCLIDTYAK-----------------------CGCIFSALKLFEDISV 148 (331)
Q Consensus 110 ~~~~~~~-~-----------------~~~~~~~~l~~~~~~-----------------------~g~~~~A~~~~~~~~~ 148 (331)
....-.. . ....++..++..+-. .++..+|.+....+..
T Consensus 539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 5543211 0 011122222222210 0011111111111100
Q ss_pred -----------------c----CCc------HHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhcc
Q 048799 149 -----------------E----RKN------LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHG 201 (331)
Q Consensus 149 -----------------~----~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 201 (331)
. .|+ ...|......+.+.+..++|...+.+.... .+.....|......+...
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVK 697 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHH
Confidence 0 111 122445566777888888888777776553 234556677777778889
Q ss_pred CChHHHHHHHHHHHHhcCCCC-cHhhHHHHHHHHHhcCCHHHHHH--HHhhcccC-CccHHHHHHHHHHHhcCCchhHHH
Q 048799 202 GLVEEGLKFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEK--VASGIPSE-ITNVVVWRTLLGACSFHGNVEMGE 277 (331)
Q Consensus 202 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~ 277 (331)
|..++|.+.|..... +.| ++....++..++.+.|+..-|.. ++..+.+. +.+...|..+...+.+.|+.+.|.
T Consensus 698 ~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred HhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHH
Confidence 999999999998874 455 67788999999999999888888 99988887 557899999999999999999999
Q ss_pred HHHHHHHHhhcCCCc
Q 048799 278 RVTRKILEMERGYGG 292 (331)
Q Consensus 278 ~~~~~~~~~~~~~~~ 292 (331)
+.|..+.++.+.+|.
T Consensus 775 ecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 775 ECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHhhccCCCc
Confidence 999999998776653
No 118
>PF12854 PPR_1: PPR repeat
Probab=98.88 E-value=2.6e-09 Score=54.94 Aligned_cols=32 Identities=31% Similarity=0.508 Sum_probs=16.2
Q ss_pred CCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhc
Q 048799 219 EVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI 250 (331)
Q Consensus 219 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 250 (331)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
No 119
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.86 E-value=2.7e-05 Score=65.14 Aligned_cols=118 Identities=14% Similarity=0.073 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC--Cc-cHHHHHHHHHHHhcCCchhHHHHHH
Q 048799 204 VEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE--IT-NVVVWRTLLGACSFHGNVEMGERVT 280 (331)
Q Consensus 204 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 280 (331)
.+....+++++.......|+ -+|..++..-.+..-++.|..+|.++.+. .+ ++.++.+++.-++. ++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 45555666666655344443 35666777777888899999999999887 33 56677777776654 6889999999
Q ss_pred HHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhcccc
Q 048799 281 RKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNAL 323 (331)
Q Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (331)
+..++..++.+..-...+..+...++-..+..+|++..+.++.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 9999988888777777888899999999999999999887544
No 120
>PF12854 PPR_1: PPR repeat
Probab=98.85 E-value=6.5e-09 Score=53.46 Aligned_cols=34 Identities=26% Similarity=0.540 Sum_probs=30.7
Q ss_pred ccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 048799 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215 (331)
Q Consensus 182 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 215 (331)
.|+.||..||++||.+||+.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4788999999999999999999999999999873
No 121
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=2e-06 Score=75.22 Aligned_cols=206 Identities=14% Similarity=0.076 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhhCCC------------CCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCc
Q 048799 16 NLVTWNVMITGLVKWGELEYARSLFEEMPC------------RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPS 83 (331)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 83 (331)
+...|..+...|.+..++|-|.-.+..|.. .+..+-.-..-.....|..++|..+|++. ++
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~c-kR------ 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQC-KR------ 828 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHH-HH------
Confidence 334566666666666666655555555541 01011111222233455566666666555 21
Q ss_pred hHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc--------------
Q 048799 84 EITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE-------------- 149 (331)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------- 149 (331)
|..+-..|-..|.|++|.++-+.--... -..+|......+-..++.+.|++.|++....
T Consensus 829 ---~DLlNKlyQs~g~w~eA~eiAE~~DRiH----Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~ 901 (1416)
T KOG3617|consen 829 ---YDLLNKLYQSQGMWSEAFEIAETKDRIH----LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQ 901 (1416)
T ss_pred ---HHHHHHHHHhcccHHHHHHHHhhcccee----hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHH
Confidence 1223334445566666665543211111 1234444555555566666666666543110
Q ss_pred -------CCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCC
Q 048799 150 -------RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP 222 (331)
Q Consensus 150 -------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 222 (331)
..+...|.-....+-..|+.+.|+.+|....+ |..+++..|-+|+.++|-++-++- -
T Consensus 902 ~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es-------g 965 (1416)
T KOG3617|consen 902 IEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES-------G 965 (1416)
T ss_pred HHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc-------c
Confidence 11112222223333344555555555544432 334444455555555554443322 1
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHhhcc
Q 048799 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIP 251 (331)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 251 (331)
|......|.+.|-..|++.+|..+|.++.
T Consensus 966 d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 966 DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 33444456666666677777766666554
No 122
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=3.3e-06 Score=63.65 Aligned_cols=165 Identities=15% Similarity=0.094 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHH-HHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhc
Q 048799 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW-TSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200 (331)
Q Consensus 122 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 200 (331)
++..++-+....|+.+-|...++++...-|.+.-. ..-.-.+-..|++++|+++|+.+.+.. +.|..++..=+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 33444445555666666666666655443322111 111112333566666666666666544 2334444444444444
Q ss_pred cCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhc---CCchhHH
Q 048799 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSF---HGNVEMG 276 (331)
Q Consensus 201 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~---~g~~~~a 276 (331)
.|+.-+|++-+....+ .+..|...|.-+...|...|++++|.-.++++.-..| ++..+..+...+.- ..+.+.+
T Consensus 133 ~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5555566666666655 3445666666666666666666666666666665533 34444455444332 2345566
Q ss_pred HHHHHHHHHhhcC
Q 048799 277 ERVTRKILEMERG 289 (331)
Q Consensus 277 ~~~~~~~~~~~~~ 289 (331)
.++|.++++++|.
T Consensus 211 rkyy~~alkl~~~ 223 (289)
T KOG3060|consen 211 RKYYERALKLNPK 223 (289)
T ss_pred HHHHHHHHHhChH
Confidence 6666666666663
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.83 E-value=1.5e-06 Score=77.54 Aligned_cols=129 Identities=11% Similarity=0.053 Sum_probs=67.6
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCc-hHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHH
Q 048799 48 VVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPS-EITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126 (331)
Q Consensus 48 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 126 (331)
+..+..|.....+.|.+++|..+++.... ..|+ ......+..++.+.+++++|...+++.....+. +......+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~--~~~~~~~~ 160 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS--SAREILLE 160 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC--CHHHHHHH
Confidence 44455555555555555555555555522 2222 334444555555555555555555555555433 44555555
Q ss_pred HHHHHhcCCHhHHHHHHHHhhhcCCc-HHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 048799 127 IDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKEAVENFERMQK 181 (331)
Q Consensus 127 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 181 (331)
..++.+.|++++|..+|+++....|+ ..++..+..++...|+.++|...|++..+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555544332 44555555555555555555555555544
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.82 E-value=5e-06 Score=68.56 Aligned_cols=145 Identities=16% Similarity=0.125 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc-HHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCC-HHHHHHHHHHHh
Q 048799 122 VSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN-RVTFLSVLNACS 199 (331)
Q Consensus 122 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~ 199 (331)
........+...|++++|+..++.+....|+ +..+......+...++.++|.+.++++.. ..|+ ......+..++.
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all 385 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHH
Confidence 3334455566677777777777777766664 44444555677777777777777777766 3455 344455666777
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHH
Q 048799 200 HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERV 279 (331)
Q Consensus 200 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 279 (331)
+.|++.+|+.+++.... ..+-|+..|..|.++|...|+..++.....+... ..|+++.|...
T Consensus 386 ~~g~~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~----------------~~G~~~~A~~~ 447 (484)
T COG4783 386 KGGKPQEAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA----------------LAGRLEQAIIF 447 (484)
T ss_pred hcCChHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH----------------hCCCHHHHHHH
Confidence 77777777777777665 3455677777777777777777777666555432 34666666666
Q ss_pred HHHHHHh
Q 048799 280 TRKILEM 286 (331)
Q Consensus 280 ~~~~~~~ 286 (331)
+..+.+.
T Consensus 448 l~~A~~~ 454 (484)
T COG4783 448 LMRASQQ 454 (484)
T ss_pred HHHHHHh
Confidence 6666663
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.81 E-value=4.6e-07 Score=81.76 Aligned_cols=207 Identities=8% Similarity=-0.061 Sum_probs=140.5
Q ss_pred CchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHH
Q 048799 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 161 (331)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 161 (331)
.+...+..|+..+...+++++|.++.+...+..+. ....|..++..+...++.+.+..+ .++.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~--~i~~yy~~G~l~~q~~~~~~~~lv---------------~~l~ 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK--SISALYISGILSLSRRPLNDSNLL---------------NLID 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc--ceehHHHHHHHHHhhcchhhhhhh---------------hhhh
Confidence 34557777888888888888888888877766444 455555555566666665554444 2233
Q ss_pred HHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHH
Q 048799 162 GFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241 (331)
Q Consensus 162 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 241 (331)
......++.-+..+...|... .-+...+..+..+|-+.|+.++|..+++++.+. . +-|+.+.|.+...|... +++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~-D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKA-D-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHh-hHH
Confidence 333344443333444444442 234457778888999999999999999999875 3 44788889999999888 999
Q ss_pred HHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCcc--------------------HHHHHHHH
Q 048799 242 QAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD--------------------YVLMYNIL 301 (331)
Q Consensus 242 ~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--------------------~~~l~~~~ 301 (331)
+|.+++.++... +...+++..+.++|.++.+.+|++... +..+-..|
T Consensus 167 KA~~m~~KAV~~-------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 167 KAITYLKKAIYR-------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPY 233 (906)
T ss_pred HHHHHHHHHHHH-------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 999988887643 445556667777777777666655333 33344566
Q ss_pred hhhccCcchHHHHHHHhhcccc
Q 048799 302 AGVWRYGDAERLRRVVDERNAL 323 (331)
Q Consensus 302 ~~~g~~~~a~~~~~~~~~~~~~ 323 (331)
...++|+++..+++.+.+....
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcCCc
Confidence 7778899999999998876543
No 126
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.81 E-value=3.6e-06 Score=72.95 Aligned_cols=136 Identities=17% Similarity=0.182 Sum_probs=74.4
Q ss_pred HHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHH
Q 048799 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEG 207 (331)
Q Consensus 128 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 207 (331)
.+-.....|.+|+.+++.+........-|..+...|...|+++.|.++|-+.- .++-.|..|.+.|++++|
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHH
Confidence 33444556666666666554443333445556666777777777777664421 134455566777777777
Q ss_pred HHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHH
Q 048799 208 LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRK 282 (331)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 282 (331)
.++-.+.. |.......|..-.+-+-+.|++.+|.++|-.+.. |+. -|..|-+.|..+..+++..+
T Consensus 811 ~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~~--p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 811 FKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE--PDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC--chH-----HHHHHHhhCcchHHHHHHHH
Confidence 66655443 3333445555555556666666666666655443 222 23445555555555444443
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.77 E-value=1.9e-06 Score=70.93 Aligned_cols=126 Identities=15% Similarity=0.056 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCcc-HHHHHHHHHHH
Q 048799 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN-VVVWRTLLGAC 267 (331)
Q Consensus 189 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~ 267 (331)
.-|..-+ .+...|.+++|+..++.++.. .+-|........+.+.+.|+.++|.+.++++....|+ ....-.+..++
T Consensus 308 a~YG~A~-~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~al 384 (484)
T COG4783 308 AQYGRAL-QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHH-HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 3344444 344678899999999998864 3446666677788899999999999999999888666 56777788889
Q ss_pred hcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHH
Q 048799 268 SFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVV 317 (331)
Q Consensus 268 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (331)
.+.|++.+|+.+++.....+|+++..|..|+.+|...|+..++.....+.
T Consensus 385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 99999999999999999888999999999999998888877777665544
No 128
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.76 E-value=1e-06 Score=78.34 Aligned_cols=307 Identities=13% Similarity=-0.020 Sum_probs=160.0
Q ss_pred cchhHHhhhcC---CchHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCC-----chhHHHHHHHHHhcCChhHHHHHHHHH
Q 048799 3 KDGSKLFDELP---ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRN-----VVSWTGIIDGYTRMNRSNGALALFRRM 74 (331)
Q Consensus 3 ~~A~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 74 (331)
..|.+.|+..- ..+..++....+.|++..+++.|..+.-...+.+ ...|....-.|.+.++...|+.-|+..
T Consensus 509 ~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsA 588 (1238)
T KOG1127|consen 509 KRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSA 588 (1238)
T ss_pred HHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHH
Confidence 45777777655 3466778888899999999999988843332211 112333444466667777777777766
Q ss_pred HhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC---
Q 048799 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK--- 151 (331)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--- 151 (331)
.+. -|.|...|..++.+|.+.|.+..|.++|.++....+. +.....-..-..+..|.+.+|+..+........
T Consensus 589 LR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~--s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~ 664 (1238)
T KOG1127|consen 589 LRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL--SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLER 664 (1238)
T ss_pred hcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH--hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 332 1245556777777777777777777777776666443 222222333445556666666666554432200
Q ss_pred -----cHHHHHHHHHHHHccCChHHHHHHHHH------------------------------------------------
Q 048799 152 -----NLVSWTSIISGFAMHGMGKEAVENFER------------------------------------------------ 178 (331)
Q Consensus 152 -----~~~~~~~l~~~~~~~~~~~~a~~~~~~------------------------------------------------ 178 (331)
-..++..+...+.-.|-..++...+++
T Consensus 665 ~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~ 744 (1238)
T KOG1127|consen 665 TGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSK 744 (1238)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHH
Confidence 011111111111111111111111111
Q ss_pred -HHhccCCC--------------------CHHHHHHHHHHHhc--------cCChHHHHHHHHHHHHhcCCCCcHhhHHH
Q 048799 179 -MQKVVLKP--------------------NRVTFLSVLNACSH--------GGLVEEGLKFFDKMVEECEVLPDIKHYGC 229 (331)
Q Consensus 179 -m~~~~~~p--------------------~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 229 (331)
....+.-| +..+|..|+..|.+ ..+...|...+.+.++. ..-+..+|+.
T Consensus 745 q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~Wna 822 (1238)
T KOG1127|consen 745 QLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNA 822 (1238)
T ss_pred HHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHH
Confidence 11111111 11112222221111 11123445555554432 1123444554
Q ss_pred HHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCc
Q 048799 230 LIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308 (331)
Q Consensus 230 l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 308 (331)
|.-. ...|++.-|...|-..... +....+|..+...+.+..+++.|...|.....++|.+...|..........|+.-
T Consensus 823 LGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii 901 (1238)
T KOG1127|consen 823 LGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRII 901 (1238)
T ss_pred HHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHH
Confidence 4433 4456666666666555544 3345666666666777777777777777777777777666766666666666666
Q ss_pred chHHHHHH
Q 048799 309 DAERLRRV 316 (331)
Q Consensus 309 ~a~~~~~~ 316 (331)
+...+|..
T Consensus 902 ~~~~lfaH 909 (1238)
T KOG1127|consen 902 ERLILFAH 909 (1238)
T ss_pred HHHHHHHh
Confidence 66666554
No 129
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.73 E-value=1.1e-06 Score=76.08 Aligned_cols=193 Identities=12% Similarity=0.119 Sum_probs=124.4
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHh
Q 048799 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIF 137 (331)
Q Consensus 58 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 137 (331)
+...|+++.|+..|-+. . .....+.+....++|.+|+.+++.+..... ....|..+...|...|+++
T Consensus 716 l~~~~q~daainhfiea-~---------~~~kaieaai~akew~kai~ildniqdqk~---~s~yy~~iadhyan~~dfe 782 (1636)
T KOG3616|consen 716 LEQIGQLDAAINHFIEA-N---------CLIKAIEAAIGAKEWKKAISILDNIQDQKT---ASGYYGEIADHYANKGDFE 782 (1636)
T ss_pred HHHHHhHHHHHHHHHHh-h---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc---ccccchHHHHHhccchhHH
Confidence 34445555555555443 1 122234455667788888888888877644 3456677888899999999
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 048799 138 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE 217 (331)
Q Consensus 138 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 217 (331)
.|.++|.+. ..++-.|..|.+.|+|++|.++-.+.. |...+...|..-..-.-+.|++.+|+++|-.+.
T Consensus 783 ~ae~lf~e~-------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-- 851 (1636)
T KOG3616|consen 783 IAEELFTEA-------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-- 851 (1636)
T ss_pred HHHHHHHhc-------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc--
Confidence 999998765 245667788899999999988876653 344455566666666677788888877765442
Q ss_pred cCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 048799 218 CEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283 (331)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 283 (331)
.|+ .-|++|-+.|..++..++..+-... .-..|...+..-+-..|+...|+.-|-++
T Consensus 852 ---~p~-----~aiqmydk~~~~ddmirlv~k~h~d-~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 852 ---EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD-HLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred ---Cch-----HHHHHHHhhCcchHHHHHHHHhChh-hhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 233 2356677777777777776655432 11244555555566666666666655554
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.73 E-value=3.6e-07 Score=75.53 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=95.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhc
Q 048799 191 FLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSF 269 (331)
Q Consensus 191 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~ 269 (331)
...|+..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++.+.....| +......-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445666666778888888888888765 244 444577777778888888888888876633 55666666677888
Q ss_pred CCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHh
Q 048799 270 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVD 318 (331)
Q Consensus 270 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (331)
.++++.|.++.+++.+..|++..+|..|+.+|.+.|+++.|+-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888888888888888888888888888888888887775
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.73 E-value=1.4e-07 Score=66.96 Aligned_cols=114 Identities=11% Similarity=0.005 Sum_probs=89.7
Q ss_pred HHHHHHhccCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC
Q 048799 175 NFERMQKVVLKPN-RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253 (331)
Q Consensus 175 ~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 253 (331)
.|+++.. ..|+ ......+...+...|++++|.+.++.+... .+.+...+..+...+...|++++|..+++.+...
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556555 3343 345666777788899999999999988764 2447788888888999999999999999988766
Q ss_pred -CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCc
Q 048799 254 -ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG 292 (331)
Q Consensus 254 -~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 292 (331)
+.+...+..+..++...|+++.|...++.+.+..|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 445778888888899999999999999999998887744
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.72 E-value=8.1e-07 Score=63.04 Aligned_cols=115 Identities=16% Similarity=0.054 Sum_probs=77.5
Q ss_pred HHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCC
Q 048799 142 LFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEV 220 (331)
Q Consensus 142 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 220 (331)
.|+++...+| +......+...+...|++++|.+.|+.+...+ +.+...+..+...+...|++++|...++...+. .
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~ 81 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--D 81 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C
Confidence 4455554544 34455666667777788888888887776643 235566667777777778888888888777653 2
Q ss_pred CCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHH
Q 048799 221 LPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVV 259 (331)
Q Consensus 221 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 259 (331)
+.+...+..+...+...|++++|...|+......|+...
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 445666777777777888888888888777766454433
No 133
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.71 E-value=1.4e-06 Score=62.54 Aligned_cols=117 Identities=13% Similarity=0.052 Sum_probs=53.0
Q ss_pred cCChhHHHHHHHHHHhccCCC-CchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcch--hHHHHHHHHHHHhcCCHh
Q 048799 61 MNRSNGALALFRRMVACEYTE-PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH--IHVSNCLIDTYAKCGCIF 137 (331)
Q Consensus 61 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 137 (331)
.++...+...++.+....+-. ........+...+...|++++|...|+.+......+ . ..+...|..++...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~-~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDP-ELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH-HHHHHHHHHHHHHHHHcCCHH
Confidence 455555555555553221110 001222233444555555555555555555544222 1 123333455555555555
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHH
Q 048799 138 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER 178 (331)
Q Consensus 138 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 178 (331)
+|+..++...........+......|...|++++|...|++
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555544332223334444455555555555555555543
No 134
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.66 E-value=4e-06 Score=60.15 Aligned_cols=125 Identities=16% Similarity=0.152 Sum_probs=61.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhccCCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCc--HhhHHHH
Q 048799 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPN---RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD--IKHYGCL 230 (331)
Q Consensus 156 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l 230 (331)
|..++..+ ..++...+...++.+..... .+ ......+...+...|++++|...|+.+... ...|+ ......+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 33344433 25555555555555554321 11 122223344455556666666666666554 21111 1123334
Q ss_pred HHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 048799 231 IDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283 (331)
Q Consensus 231 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 283 (331)
...+...|++++|...++........+..+......+...|+.++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 55555566666666666554333333444555555666666666666666543
No 135
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.65 E-value=2.4e-07 Score=65.33 Aligned_cols=96 Identities=7% Similarity=-0.107 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhh
Q 048799 225 KHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303 (331)
Q Consensus 225 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (331)
...-.+...+...|++++|.++|+.+... +-+..-|..|..++-..|++++|+..|..+..++|+++..+..++.++..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 33444555566777777777777766655 33456666677777777777777777777777777777777777777777
Q ss_pred hccCcchHHHHHHHhhc
Q 048799 304 VWRYGDAERLRRVVDER 320 (331)
Q Consensus 304 ~g~~~~a~~~~~~~~~~ 320 (331)
.|+.+.|.+.|+.....
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 77777777777765543
No 136
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=2.1e-06 Score=66.35 Aligned_cols=197 Identities=12% Similarity=0.048 Sum_probs=124.3
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHH-HHHHHhcc
Q 048799 124 NCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS-VLNACSHG 201 (331)
Q Consensus 124 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~ 201 (331)
++.+..+.+..++..|++++..-.+..| +......+..+|....++..|-..++++-. ..|...-|.. -...+.+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHh
Confidence 3444455666677777777666555544 555566666667777777777777777655 3354444432 23345566
Q ss_pred CChHHHHHHHHHHHHhcCCCCcHhhHHHHHH--HHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHH
Q 048799 202 GLVEEGLKFFDKMVEECEVLPDIKHYGCLID--MLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERV 279 (331)
Q Consensus 202 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 279 (331)
+.+.+|.++...|... |+...-..-++ .....+++..+..+.+..... .+..+.........+.|+++.|.+-
T Consensus 92 ~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred cccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC-CccchhccchheeeccccHHHHHHH
Confidence 6777777777666431 22221111111 223467777777777776642 2455555555666788888888888
Q ss_pred HHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhccccCCCC
Q 048799 280 TRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPG 327 (331)
Q Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 327 (331)
|+.+.+...-.+..-..++.+..+.|+++.|+++..++.++|++.-|.
T Consensus 167 FqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPE 214 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence 888888665555566667777777888888888888888888876664
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.63 E-value=1.9e-06 Score=71.32 Aligned_cols=123 Identities=9% Similarity=0.047 Sum_probs=95.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHH
Q 048799 51 WTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTY 130 (331)
Q Consensus 51 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (331)
-..|+..+...++++.|+.+|+++.. .. |+ ....+++.+...++-.+|.+++++.++..+. +..........+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~-~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~--d~~LL~~Qa~fL 244 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRE-RD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ--DSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHh-cC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Confidence 34556666677889999999998833 22 44 3445777777778888888888888876443 677777778888
Q ss_pred HhcCCHhHHHHHHHHhhhcCCc-HHHHHHHHHHHHccCChHHHHHHHHHHH
Q 048799 131 AKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKEAVENFERMQ 180 (331)
Q Consensus 131 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 180 (331)
.+.++++.|+.+.+++....|+ -.+|..|..+|...|+++.|+..++.+-
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8999999999999999888775 4589999999999999999998887663
No 138
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.59 E-value=9.9e-05 Score=65.50 Aligned_cols=227 Identities=12% Similarity=0.061 Sum_probs=118.0
Q ss_pred HhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhH
Q 048799 59 TRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFS 138 (331)
Q Consensus 59 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 138 (331)
...+++.+|++...++.++.+-.+-...+.+ -...+.|+.++|..+++.....+.. |..+...+-.+|.+.|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLka--Lsl~r~gk~~ea~~~Le~~~~~~~~--D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKA--LSLFRLGKGDEALKLLEALYGLKGT--DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHH--HHHHHhcCchhHHHHHhhhccCCCC--chHHHHHHHHHHHHHhhhhH
Confidence 3456666677666666443322221112211 1234667777777666655554443 56666666677777777777
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccC----------ChHHHH
Q 048799 139 ALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG----------LVEEGL 208 (331)
Q Consensus 139 A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----------~~~~a~ 208 (331)
|..+|+++....|+......+..+|.+.+.+.+-.+.--+|-+ ..+-+...|-.+++.+...- -..-|.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 7777777766666655555555566665554433222222222 13334444444444433221 123355
Q ss_pred HHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhh-cccCCc--cHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG-IPSEIT--NVVVWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
+.++.+.+..|.--+..-.......+...|++++|.+++.. ..+..+ +...-+.-+..+...+++.+..++..++.+
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 56666665522111111112222334566777777777733 222211 233333445566677777777777777777
Q ss_pred hhcCC
Q 048799 286 MERGY 290 (331)
Q Consensus 286 ~~~~~ 290 (331)
.++++
T Consensus 255 k~~Dd 259 (932)
T KOG2053|consen 255 KGNDD 259 (932)
T ss_pred hCCcc
Confidence 66665
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=1.4e-05 Score=60.44 Aligned_cols=183 Identities=11% Similarity=0.099 Sum_probs=134.7
Q ss_pred CHhHHHHHHHHhhhc------CCcH-HHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHH-HHHHhccCChHH
Q 048799 135 CIFSALKLFEDISVE------RKNL-VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV-LNACSHGGLVEE 206 (331)
Q Consensus 135 ~~~~A~~~~~~~~~~------~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~~~~~~ 206 (331)
+.++..+++.++... +++. ..|..++-+....|+.+-|...++++... + |.+.-...| .-.+-..|++++
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhh
Confidence 345555555555432 2332 33555555666789999999999998765 3 443222222 223456799999
Q ss_pred HHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 207 GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 207 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
|+++++...+. . +.|..++..=+-..-..|+.-+|.+-+....+. ..|...|..+...|...|++++|.-++++++=
T Consensus 105 A~e~y~~lL~d-d-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLED-D-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhcc-C-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 99999999985 3 557778877777777889888999988888777 66899999999999999999999999999999
Q ss_pred hhcCCCccHHHHHHHHhhhc---cCcchHHHHHHHhhcc
Q 048799 286 MERGYGGDYVLMYNILAGVW---RYGDAERLRRVVDERN 321 (331)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~ 321 (331)
..|-++..+..++..+...| +..-+.+++++..+..
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 99998777888888876665 4556777777766644
No 140
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=0.00032 Score=63.41 Aligned_cols=142 Identities=19% Similarity=0.275 Sum_probs=102.8
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHH
Q 048799 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLI 231 (331)
Q Consensus 152 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 231 (331)
.+..|..+..+-.+.|...+|++-|-+. -|+..|..++....+.|.+++-.+++.-++++ .-.|.. -+.|+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~i--d~eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYI--DSELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccc--hHHHH
Confidence 4567888888888888888888877543 35667888999999999999999988888776 555544 35788
Q ss_pred HHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchH
Q 048799 232 DMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311 (331)
Q Consensus 232 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 311 (331)
-+|.+.+++.+.++++.. |+......+.+-|...|.++.|.-+|... +.|..|+..+...|.+..|.
T Consensus 1174 ~AyAkt~rl~elE~fi~g-----pN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIAG-----PNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHHHHhchHHHHHHHhcC-----CCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHH
Confidence 889999998887766543 56666677777777777777776666543 34566666666666666665
Q ss_pred HHHH
Q 048799 312 RLRR 315 (331)
Q Consensus 312 ~~~~ 315 (331)
+.-+
T Consensus 1241 D~aR 1244 (1666)
T KOG0985|consen 1241 DAAR 1244 (1666)
T ss_pred HHhh
Confidence 5433
No 141
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=1.9e-05 Score=69.39 Aligned_cols=242 Identities=12% Similarity=0.094 Sum_probs=149.9
Q ss_pred hHHHHHHHHH--HHHHcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCC--------CCchH
Q 048799 16 NLVTWNVMIT--GLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT--------EPSEI 85 (331)
Q Consensus 16 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~ 85 (331)
|..|--.+++ .|..-|+.|.|.+-.+.++ +...|..+.+.|.+.++.+-|.-.+-.|....|. .|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 5566666653 4677899999988887765 4457999999999998888877776666221221 222 1
Q ss_pred HHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHc
Q 048799 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 165 (331)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (331)
+=..+.-.....|.+++|..+|++.... ..|=+.|-..|.|++|.++-+.--. -.-..||.....-+-.
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~----------DLlNKlyQs~g~w~eA~eiAE~~DR-iHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRY----------DLLNKLYQSQGMWSEAFEIAETKDR-IHLRNTYYNYAKYLEA 870 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHH----------HHHHHHHHhcccHHHHHHHHhhccc-eehhhhHHHHHHHHHh
Confidence 1112222334778999999999887643 3355677888999999988664311 1123567677777777
Q ss_pred cCChHHHHHHHHHHHh----------cc---------CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhh
Q 048799 166 HGMGKEAVENFERMQK----------VV---------LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH 226 (331)
Q Consensus 166 ~~~~~~a~~~~~~m~~----------~~---------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 226 (331)
.++.+.|++.|++... .. -..|...|......+...|+++.|+.+|..+..
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------- 940 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------- 940 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------
Confidence 8889999988876321 11 011333344444444556666666666665543
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 227 YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 227 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
|-++++..|-.|+.++|-++-++-. |....-.+.+.|-..|++.+|...|.++..
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~esg----d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEESG----DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhcc----cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 2234455556666666666655543 334444566666666777777776666653
No 142
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.49 E-value=4.7e-06 Score=57.56 Aligned_cols=101 Identities=10% Similarity=0.061 Sum_probs=54.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhcCCCC-cHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCcc----HHHHHHHHH
Q 048799 191 FLSVLNACSHGGLVEEGLKFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN----VVVWRTLLG 265 (331)
Q Consensus 191 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~ 265 (331)
+..++..+.+.|++++|.+.|..+.+...-.+ ....+..+..++.+.|+++.|.+.++.+....|+ ...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444555556666666666666654311001 1234444555666666666666666655543222 344555555
Q ss_pred HHhcCCchhHHHHHHHHHHHhhcCCC
Q 048799 266 ACSFHGNVEMGERVTRKILEMERGYG 291 (331)
Q Consensus 266 ~~~~~g~~~~a~~~~~~~~~~~~~~~ 291 (331)
++...|+.++|.+.++++.+..|++.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 66666666666666666666666553
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.47 E-value=2.8e-06 Score=58.71 Aligned_cols=98 Identities=11% Similarity=-0.032 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhcccCCcc----HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCC---CccHHHH
Q 048799 225 KHYGCLIDMLGRAGRLEQAEKVASGIPSEITN----VVVWRTLLGACSFHGNVEMGERVTRKILEMERGY---GGDYVLM 297 (331)
Q Consensus 225 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l 297 (331)
.++..++..+.+.|++++|.+.|..+....|+ ...+..+..++.+.|+++.|...++.+.+..|++ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667788899999999999999999876343 3567778999999999999999999999988875 3467888
Q ss_pred HHHHhhhccCcchHHHHHHHhhccc
Q 048799 298 YNILAGVWRYGDAERLRRVVDERNA 322 (331)
Q Consensus 298 ~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (331)
+.++.+.|+.++|.+.++.+.+...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCc
Confidence 9999999999999999999988653
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.46 E-value=1.4e-06 Score=57.29 Aligned_cols=92 Identities=16% Similarity=0.045 Sum_probs=52.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhcc
Q 048799 228 GCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306 (331)
Q Consensus 228 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 306 (331)
..++..+...|++++|...++.+... +.+...+..+...+...|++++|.+.++.+.+..|.+...+..++..+...|+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 34444555556666666666655544 22334455555555566666666666666666555555555566666666666
Q ss_pred CcchHHHHHHHhh
Q 048799 307 YGDAERLRRVVDE 319 (331)
Q Consensus 307 ~~~a~~~~~~~~~ 319 (331)
+++|...++...+
T Consensus 84 ~~~a~~~~~~~~~ 96 (100)
T cd00189 84 YEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHc
Confidence 6666666655543
No 145
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.43 E-value=1.2e-06 Score=56.27 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=39.5
Q ss_pred cCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHH
Q 048799 61 MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSAL 140 (331)
Q Consensus 61 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 140 (331)
+|+++.|+.+++++.......++...+..+..++.+.|++++|..++++ .+.+.. +......++.++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~--~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS--NPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC--HHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC--CHHHHHHHHHHHHHhCCHHHHH
Confidence 3556666666666633322112333444455556666666666666655 222211 3333334455566666666666
Q ss_pred HHHHH
Q 048799 141 KLFED 145 (331)
Q Consensus 141 ~~~~~ 145 (331)
+.|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55543
No 146
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.43 E-value=1.8e-07 Score=60.11 Aligned_cols=81 Identities=19% Similarity=0.158 Sum_probs=46.7
Q ss_pred cCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHH
Q 048799 201 GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERV 279 (331)
Q Consensus 201 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~ 279 (331)
.|+++.|+.+++++.+.....++...+..+..+|.+.|++++|..+++. ... ..+......+..++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4667777777777766511112344444466777777777777777766 222 22334444456667777777777777
Q ss_pred HHH
Q 048799 280 TRK 282 (331)
Q Consensus 280 ~~~ 282 (331)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 665
No 147
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.1e-05 Score=65.18 Aligned_cols=155 Identities=11% Similarity=0.003 Sum_probs=87.2
Q ss_pred HHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHH--HHhccCChHHHHHHHHHHHHhcCCCCcHhhH------------
Q 048799 162 GFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLN--ACSHGGLVEEGLKFFDKMVEECEVLPDIKHY------------ 227 (331)
Q Consensus 162 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------ 227 (331)
++...|++++|.+.--..++.. ++ ..+...++ ++-..++.+.|...|++.+.. .|+-..-
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~l---dpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALRL---DPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhcc---ChhhhhHHhHhhhHHHHHH
Confidence 4455666666666554444421 11 11222222 223455666666666665532 3332111
Q ss_pred -HHHHHHHHhcCCHHHHHHHHhhcccC-----CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 048799 228 -GCLIDMLGRAGRLEQAEKVASGIPSE-----ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301 (331)
Q Consensus 228 -~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (331)
..=..-..+.|++..|.+.|.+.+.. .|+...|.....+..+.|+..+|+.-.+.+.+++|.....+..-+.++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 11122234667777777777776665 334455655566666777777777777777777776666666666777
Q ss_pred hhhccCcchHHHHHHHhhccc
Q 048799 302 AGVWRYGDAERLRRVVDERNA 322 (331)
Q Consensus 302 ~~~g~~~~a~~~~~~~~~~~~ 322 (331)
...++|++|.+-++...+...
T Consensus 332 l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 777777777777766655443
No 148
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.41 E-value=0.00011 Score=59.15 Aligned_cols=133 Identities=16% Similarity=0.124 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhc-CCHhHHHHHHHHhhhc----C-C--cHHHHHHHHHHHHccCChHHHHHHHHHHHhccC-----CCC
Q 048799 121 HVSNCLIDTYAKC-GCIFSALKLFEDISVE----R-K--NLVSWTSIISGFAMHGMGKEAVENFERMQKVVL-----KPN 187 (331)
Q Consensus 121 ~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----~p~ 187 (331)
..+..+...|... |++++|.+.|+++... + + -...+..+...+.+.|++++|+++|++...... ..+
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 3445555666666 6777777766666443 1 1 123345555666677777777777766654321 111
Q ss_pred HH-HHHHHHHHHhccCChHHHHHHHHHHHHh-cCCCCc--HhhHHHHHHHHHh--cCCHHHHHHHHhhcccC
Q 048799 188 RV-TFLSVLNACSHGGLVEEGLKFFDKMVEE-CEVLPD--IKHYGCLIDMLGR--AGRLEQAEKVASGIPSE 253 (331)
Q Consensus 188 ~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~ 253 (331)
.. .|...+-++...|+...|.+.+++.... +++..+ ......|+.++-. ...+.+|..-|+.+...
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 11 2223333455566677777776666532 122221 2344455555532 23455566666665543
No 149
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.40 E-value=3.2e-05 Score=54.72 Aligned_cols=103 Identities=11% Similarity=0.075 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 197 (331)
+......+...+...|++++|.++|+.+....| +..-|..|..++-..|++++|+..|....... +-++..+..+..+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 444555677778888888888888888876666 56677788888888888888888888887754 2456777778888
Q ss_pred HhccCChHHHHHHHHHHHHhcCCCC
Q 048799 198 CSHGGLVEEGLKFFDKMVEECEVLP 222 (331)
Q Consensus 198 ~~~~~~~~~a~~~~~~~~~~~~~~~ 222 (331)
+...|+.+.|.+.|+..+...+-.|
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHhccCh
Confidence 8888888888888888877644333
No 150
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=4e-06 Score=64.91 Aligned_cols=90 Identities=17% Similarity=0.081 Sum_probs=46.4
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCcc-HHHHHHHHHHHhcCCchhHHHH
Q 048799 200 HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN-VVVWRTLLGACSFHGNVEMGER 278 (331)
Q Consensus 200 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~ 278 (331)
+.+++++|+..|.++++- .+-|...|..-..+|++.|.++.|.+-.+.++...|+ ..+|..|..+|...|++++|++
T Consensus 93 ~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 445555555555555531 1224444444455555555555555555555544222 3455555555555555555555
Q ss_pred HHHHHHHhhcCCC
Q 048799 279 VTRKILEMERGYG 291 (331)
Q Consensus 279 ~~~~~~~~~~~~~ 291 (331)
.|+++++++|++.
T Consensus 171 aykKaLeldP~Ne 183 (304)
T KOG0553|consen 171 AYKKALELDPDNE 183 (304)
T ss_pred HHHhhhccCCCcH
Confidence 5555555555553
No 151
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.39 E-value=6.6e-07 Score=46.63 Aligned_cols=33 Identities=27% Similarity=0.546 Sum_probs=25.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhccCCCC
Q 048799 155 SWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187 (331)
Q Consensus 155 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 187 (331)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 152
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.37 E-value=8.1e-05 Score=53.72 Aligned_cols=132 Identities=12% Similarity=0.032 Sum_probs=89.4
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc---cHHHH
Q 048799 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT---NVVVW 260 (331)
Q Consensus 184 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~ 260 (331)
..|+...-..|..+..+.|+..+|...|++.... -+.-|..+...+.++....+++..|...++++.+..| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 3466666666777777778888888888777664 4445677777777777777888888777777665522 23344
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHH
Q 048799 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVV 317 (331)
Q Consensus 261 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (331)
..+...+...|++..|+..|+.+....|+. ..-......+.++|+.+++..-+..+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 456677777788888888888777766664 55555667777777776665444433
No 153
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.37 E-value=5.4e-05 Score=60.94 Aligned_cols=160 Identities=13% Similarity=0.064 Sum_probs=77.7
Q ss_pred HHHHhhcCchhHHHHHHhhhhhc----CCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc-----CCc--HHHHHHH
Q 048799 91 FPAIWQNGDVRNCQLIHGYGEKR----GFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE-----RKN--LVSWTSI 159 (331)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~--~~~~~~l 159 (331)
...|-..+++++|.+.|.+..+. +........|.....+|.+. ++++|...++++... .++ ...+..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 33444455555555555444221 11110122333333333333 566666655555432 111 2345555
Q ss_pred HHHHHcc-CChHHHHHHHHHHHhc----cCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCC-----CcHh-h
Q 048799 160 ISGFAMH-GMGKEAVENFERMQKV----VLKPN--RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVL-----PDIK-H 226 (331)
Q Consensus 160 ~~~~~~~-~~~~~a~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~-~ 226 (331)
...|... |++++|++.|++.... | .+. ..++..+...+.+.|++++|.++|+++... ... .+.. .
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK-CLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-CCCHCTTGHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-hhcccccchhHHHH
Confidence 5666666 7777777777776542 1 111 234556666777777777777777777654 211 1111 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcccC
Q 048799 227 YGCLIDMLGRAGRLEQAEKVASGIPSE 253 (331)
Q Consensus 227 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 253 (331)
+...+-++...|++..|.+.+++....
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 222233455567777777777776544
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.37 E-value=1.1e-05 Score=67.10 Aligned_cols=103 Identities=9% Similarity=-0.026 Sum_probs=69.0
Q ss_pred HHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchh
Q 048799 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVE 274 (331)
Q Consensus 196 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 274 (331)
..+...|++++|+..|+++++. .+.+...|..+..+|...|++++|...++++....| +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 3445667777777777777653 223556666667777777777777777777766633 4566777777777777777
Q ss_pred HHHHHHHHHHHhhcCCCccHHHHHHH
Q 048799 275 MGERVTRKILEMERGYGGDYVLMYNI 300 (331)
Q Consensus 275 ~a~~~~~~~~~~~~~~~~~~~~l~~~ 300 (331)
+|...|+++++++|+++.....+..+
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 77777777777777775555444443
No 155
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.36 E-value=8.8e-07 Score=45.81 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhccCCC
Q 048799 154 VSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186 (331)
Q Consensus 154 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 186 (331)
.+|+.++.+|++.|+++.|.++|+.|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666555
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.36 E-value=6.1e-06 Score=54.17 Aligned_cols=89 Identities=21% Similarity=0.119 Sum_probs=38.6
Q ss_pred HHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCch
Q 048799 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNV 273 (331)
Q Consensus 195 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~ 273 (331)
...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++..... +.+...+..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 33344444444444444444432 1112233444444444444455555444444333 22223444444444455555
Q ss_pred hHHHHHHHHHHH
Q 048799 274 EMGERVTRKILE 285 (331)
Q Consensus 274 ~~a~~~~~~~~~ 285 (331)
+.|...+..+.+
T Consensus 85 ~~a~~~~~~~~~ 96 (100)
T cd00189 85 EEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHc
Confidence 555555544443
No 157
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.35 E-value=2.5e-05 Score=62.62 Aligned_cols=132 Identities=14% Similarity=0.164 Sum_probs=67.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHH-HhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHH
Q 048799 155 SWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA-CSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDM 233 (331)
Q Consensus 155 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 233 (331)
+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. ++.+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 45555555555555666666666655332 1122222222222 22234455566666666553 33355555566666
Q ss_pred HHhcCCHHHHHHHHhhcccCCcc----HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcC
Q 048799 234 LGRAGRLEQAEKVASGIPSEITN----VVVWRTLLGACSFHGNVEMGERVTRKILEMERG 289 (331)
Q Consensus 234 ~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 289 (331)
+...|+.+.|..+|++.....|. ...|...+.--.+.|+.+.+.++.+++.+..|.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 66666666666666666555222 235666666666666666666666666655444
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.33 E-value=1.8e-05 Score=65.69 Aligned_cols=94 Identities=7% Similarity=-0.145 Sum_probs=58.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcC
Q 048799 55 IDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134 (331)
Q Consensus 55 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 134 (331)
...+...|++++|+..|++++... +.+...|..+..++...|++++|+..++++++..+. +...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~--~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS--LAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHhC
Confidence 344556677777777777664322 234555666666666677777777777776666433 5556666666677777
Q ss_pred CHhHHHHHHHHhhhcCCc
Q 048799 135 CIFSALKLFEDISVERKN 152 (331)
Q Consensus 135 ~~~~A~~~~~~~~~~~~~ 152 (331)
++++|...|+++....|+
T Consensus 85 ~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 85 EYQTAKAALEKGASLAPG 102 (356)
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 777777777766665554
No 159
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.33 E-value=6.7e-06 Score=66.47 Aligned_cols=260 Identities=11% Similarity=0.007 Sum_probs=123.7
Q ss_pred HHHHcCCHHHHHHHHhhCCCCCc-------hhHHHHHHHHHhcCChhHHHHHHHHHH---hccC-CCCchHHHHHHHHHH
Q 048799 26 GLVKWGELEYARSLFEEMPCRNV-------VSWTGIIDGYTRMNRSNGALALFRRMV---ACEY-TEPSEITILAVFPAI 94 (331)
Q Consensus 26 ~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~-~~~~~~~~~~l~~~~ 94 (331)
-+++.|+....+.+|+...+... ..|..|.++|.-.+++++|++.-..=+ +.-| ..-...+...|.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 36677777777777776653221 235555555656666666666432210 0000 011122333445555
Q ss_pred hhcCchhHHHHHHhh----hhhcCCCcchhHHHHHHHHHHHhcCC--------------------HhHHHHHHHHhhhc-
Q 048799 95 WQNGDVRNCQLIHGY----GEKRGFNAFHIHVSNCLIDTYAKCGC--------------------IFSALKLFEDISVE- 149 (331)
Q Consensus 95 ~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~~- 149 (331)
--.|.+++|.-...+ ..+.|.......++..|...|...|+ ++.|.++|.+=.+.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666554433 23333332234455556666655442 12222333221111
Q ss_pred ------CCcHHHHHHHHHHHHccCChHHHHHHHHHH----HhccCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHh-
Q 048799 150 ------RKNLVSWTSIISGFAMHGMGKEAVENFERM----QKVVLKP-NRVTFLSVLNACSHGGLVEEGLKFFDKMVEE- 217 (331)
Q Consensus 150 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m----~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 217 (331)
.....+|..|...|.-.|+++.|+..-+.- .+.|-.. -...+..|..++.-.|+++.|.+.|+.....
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 011233445555555556666666543321 1222111 2234555666666666666666666553321
Q ss_pred --cCC-CCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-------CccHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 218 --CEV-LPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-------ITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 218 --~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
.|- .....+..+|...|.-..++++|+.++.+-... .-....+.+|..+|...|..++|+.+.+..++
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 011 112334445555555555666665555442211 22345556666666666666666666666665
No 160
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.32 E-value=1.2e-06 Score=53.89 Aligned_cols=65 Identities=15% Similarity=0.081 Sum_probs=48.2
Q ss_pred cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhc-cCcchHHHHHHHhhc
Q 048799 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW-RYGDAERLRRVVDER 320 (331)
Q Consensus 256 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~ 320 (331)
++..|..+...+...|++++|+..|+++++.+|+++..+..++.++...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 35567777777777777777777777777777777777777777777777 677777777776553
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.30 E-value=5.6e-05 Score=56.01 Aligned_cols=86 Identities=12% Similarity=-0.058 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcc-hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHH
Q 048799 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF-HIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGF 163 (331)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 163 (331)
.+..+...+...|++++|...|+++++....++ ....+..++.++.+.|++++|...++++....| +...+..+...+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344455555556666666666666555433321 134555666666666666666666666655544 344455555555
Q ss_pred HccCChHH
Q 048799 164 AMHGMGKE 171 (331)
Q Consensus 164 ~~~~~~~~ 171 (331)
...|+...
T Consensus 117 ~~~g~~~~ 124 (172)
T PRK02603 117 HKRGEKAE 124 (172)
T ss_pred HHcCChHh
Confidence 55555433
No 162
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.28 E-value=0.00036 Score=54.64 Aligned_cols=182 Identities=10% Similarity=0.029 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcH-HH---HHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHH
Q 048799 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNL-VS---WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195 (331)
Q Consensus 120 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 195 (331)
..........+...|++++|.+.|+++....|+. .. .-.++.++.+.+++++|+..+++..+....-...-+...+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 3333345666777888888888888887765543 22 2345567788888888888888887753222222233333
Q ss_pred HHHhc--cC---------------C---hHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc
Q 048799 196 NACSH--GG---------------L---VEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255 (331)
Q Consensus 196 ~~~~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 255 (331)
.+.+. .+ + ...|...|+.+++. -|+. .-..+|..-+..+...
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---yP~S-------------~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---YPNS-------------QYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---CcCC-------------hhHHHHHHHHHHHHHH--
Confidence 33221 11 1 23455566666654 2322 1133333333333221
Q ss_pred cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCc---cHHHHHHHHhhhccCcchHHHHHHHhh
Q 048799 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG---DYVLMYNILAGVWRYGDAERLRRVVDE 319 (331)
Q Consensus 256 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (331)
-...-..+..-|.+.|.+..|..-++.+++.-|+++. ....+..+|...|..++|.+....+..
T Consensus 174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 1111123556678888999999999999887776643 455677888889999988887776543
No 163
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.28 E-value=3.4e-06 Score=51.17 Aligned_cols=61 Identities=16% Similarity=0.131 Sum_probs=40.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCC
Q 048799 230 LIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 290 (331)
Q Consensus 230 l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 290 (331)
+...+.+.|++++|...|+.+....| +...+..+..++...|++++|...|+++++..|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 34556677777777777777776644 45666677777777777777777777777766665
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.28 E-value=0.00011 Score=54.47 Aligned_cols=88 Identities=13% Similarity=0.020 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc----HHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHH
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN----LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 194 (331)
....+..++..+...|++++|...|+++....|+ ...+..+...+.+.|++++|+..+++..... +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 5556777888888888888888888888755332 3567777888888888888888888877642 1234555566
Q ss_pred HHHHhccCChHHH
Q 048799 195 LNACSHGGLVEEG 207 (331)
Q Consensus 195 ~~~~~~~~~~~~a 207 (331)
...+...|+...+
T Consensus 113 g~~~~~~g~~~~a 125 (172)
T PRK02603 113 AVIYHKRGEKAEE 125 (172)
T ss_pred HHHHHHcCChHhH
Confidence 6666666664333
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.27 E-value=3.3e-05 Score=57.03 Aligned_cols=62 Identities=6% Similarity=-0.116 Sum_probs=26.3
Q ss_pred HHHHHHHhhcCchhHHHHHHhhhhhcCCCcc-hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 048799 88 LAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF-HIHVSNCLIDTYAKCGCIFSALKLFEDISVE 149 (331)
Q Consensus 88 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 149 (331)
..+...+...|++++|...+++++.....+. ...++..+..++...|++++|+..++++...
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333444444444444444444443322210 1223444444445555555555555444433
No 166
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.24 E-value=1.9e-06 Score=44.79 Aligned_cols=33 Identities=33% Similarity=0.575 Sum_probs=25.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCc
Q 048799 50 SWTGIIDGYTRMNRSNGALALFRRMVACEYTEPS 83 (331)
Q Consensus 50 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 83 (331)
+||.++.+|++.|++++|.++|++| ...|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M-~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEM-LERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHH-HHcCCCCC
Confidence 6788888888888888888888888 56677776
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.24 E-value=7.6e-05 Score=64.85 Aligned_cols=140 Identities=12% Similarity=0.018 Sum_probs=99.4
Q ss_pred CcHHHHHHHHHHHH--ccC---ChHHHHHHHHHHHhccCCCCH-HHHHHHHHHHhcc--------CChHHHHHHHHHHHH
Q 048799 151 KNLVSWTSIISGFA--MHG---MGKEAVENFERMQKVVLKPNR-VTFLSVLNACSHG--------GLVEEGLKFFDKMVE 216 (331)
Q Consensus 151 ~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~ 216 (331)
.+..+|..++.+.. ..+ +.+.|+.+|++..+ ..|+- ..+..+..++... .+...+.+...+...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 46788888887643 322 37799999999988 45663 3344333333221 123344444444333
Q ss_pred hcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCc
Q 048799 217 ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG 292 (331)
Q Consensus 217 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 292 (331)
....+.+...|..+.-.....|++++|...++++....|+...|..+...+...|+.++|.+.++++.+++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 2123345677877777777789999999999999988788889999999999999999999999999999998854
No 168
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.22 E-value=6.2e-05 Score=60.38 Aligned_cols=141 Identities=16% Similarity=0.079 Sum_probs=89.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHH-HhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHH
Q 048799 49 VSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPA-IWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127 (331)
Q Consensus 49 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 127 (331)
.+|-.+++..-+.+..+.|..+|.+...... .+...|...... +...++.+.|..+|+...+.-.. +...|...+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~--~~~~~~~Y~ 77 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS--DPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT---HHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC--CHHHHHHHH
Confidence 3567777777777778888888888742222 233444444443 23356666688888887776322 677777788
Q ss_pred HHHHhcCCHhHHHHHHHHhhhcCCcH----HHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHH
Q 048799 128 DTYAKCGCIFSALKLFEDISVERKNL----VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195 (331)
Q Consensus 128 ~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 195 (331)
+.+.+.|+.+.|..+|++....-+.. ..|...+..=.+.|+.+.+.++.+++.+. .|+...+..++
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~ 147 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFS 147 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHH
Confidence 88888888888888888887663333 47888888777788888888888777663 34433333333
No 169
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.21 E-value=0.00059 Score=49.41 Aligned_cols=126 Identities=13% Similarity=0.011 Sum_probs=76.2
Q ss_pred CCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC---cHHHHH
Q 048799 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK---NLVSWT 157 (331)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~ 157 (331)
.|+...-..|..++.+.|+..+|...|++....-.-. |......+.++....++...|...++.+-+.+| ++.+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~-d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAH-DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC-CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 4565556666677777777777777777766554444 666666667777777777777777776655433 234445
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHH
Q 048799 158 SIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209 (331)
Q Consensus 158 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 209 (331)
.+...+...|.+.+|..-|+..... -|+...-......+.++|+.+++..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 5566666777777777777776663 3444333333333455565554443
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.19 E-value=9.5e-05 Score=54.56 Aligned_cols=63 Identities=13% Similarity=0.192 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhccCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 048799 154 VSWTSIISGFAMHGMGKEAVENFERMQKVVLKP--NRVTFLSVLNACSHGGLVEEGLKFFDKMVE 216 (331)
Q Consensus 154 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 216 (331)
..|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...+++..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555566666666665554432111 123445555555555555555555555553
No 171
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.18 E-value=7.8e-06 Score=50.24 Aligned_cols=66 Identities=17% Similarity=0.043 Sum_probs=50.6
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCC-chhHHHHHHHHHHHhhc
Q 048799 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHG-NVEMGERVTRKILEMER 288 (331)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~ 288 (331)
+...|..+...+...|++++|...|.++....| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 455677777778888888888888888777733 5677777888888888 68888888888887766
No 172
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.17 E-value=4.8e-06 Score=42.93 Aligned_cols=33 Identities=36% Similarity=0.670 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCC
Q 048799 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP 222 (331)
Q Consensus 189 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 222 (331)
.+|+.++.+|++.|+++.|.++|+.|.+. |++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~-gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQ-GVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCC
Confidence 58999999999999999999999999988 8887
No 173
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.16 E-value=5.7e-05 Score=49.71 Aligned_cols=79 Identities=10% Similarity=0.160 Sum_probs=61.2
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhccC--------ChHHHHHHHHHHHHhcCCCCcHhhH
Q 048799 157 TSIISGFAMHGMGKEAVENFERMQKVVL-KPNRVTFLSVLNACSHGG--------LVEEGLKFFDKMVEECEVLPDIKHY 227 (331)
Q Consensus 157 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 227 (331)
...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. ++-..+.+|+.|... +++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 3445556666888888888988888888 888888988888876543 244567788888887 888888888
Q ss_pred HHHHHHHHh
Q 048799 228 GCLIDMLGR 236 (331)
Q Consensus 228 ~~l~~~~~~ 236 (331)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888877754
No 174
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=3.5e-05 Score=60.11 Aligned_cols=107 Identities=13% Similarity=0.008 Sum_probs=74.2
Q ss_pred CCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcC---CchhHHHHHHHHHHHhhcCCCccHHH
Q 048799 221 LPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFH---GNVEMGERVTRKILEMERGYGGDYVL 296 (331)
Q Consensus 221 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~ 296 (331)
+-|...|-.|...|...|+...|..-|.++... .+++..+..+..++..+ ....++..+++++++.+|.++.....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 336777777777777777777777777777766 45566666666554322 23456777777777777777777777
Q ss_pred HHHHHhhhccCcchHHHHHHHhhccccCCCC
Q 048799 297 MYNILAGVWRYGDAERLRRVVDERNALKFPG 327 (331)
Q Consensus 297 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 327 (331)
|+..+...|++.+|...++.|.+......|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 7777777777777777777777765544443
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.14 E-value=1.6e-05 Score=48.72 Aligned_cols=59 Identities=17% Similarity=0.147 Sum_probs=34.9
Q ss_pred hcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHH
Q 048799 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSW 156 (331)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 156 (331)
..|++++|+++|+++.+..+. +..++..++.+|.+.|++++|..+++++....|+...|
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 456666666666666665443 55555566666666666666666666666555553333
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.12 E-value=0.00028 Score=61.44 Aligned_cols=67 Identities=12% Similarity=-0.017 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCcc
Q 048799 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN 256 (331)
Q Consensus 187 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 256 (331)
+...|..+.......|++++|...++++.+. .|+...|..+...+...|+.++|...++++....|.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3345555544444556666666666666643 345566666666666666666666666666555343
No 177
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.12 E-value=0.00018 Score=58.53 Aligned_cols=262 Identities=12% Similarity=-0.013 Sum_probs=162.7
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCCc----hHHHHHHHHHHhhcCchhHHHHHHhhh----hhcCCCcchhHHHHHHHH
Q 048799 57 GYTRMNRSNGALALFRRMVACEYTEPS----EITILAVFPAIWQNGDVRNCQLIHGYG----EKRGFNAFHIHVSNCLID 128 (331)
Q Consensus 57 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~l~~ 128 (331)
-+++.|+....+.+|+..+. -|. .| +.+|..|.++|.-.+++++|+++...= ...|...-.......|.+
T Consensus 26 RLck~gdcraGv~ff~aA~q-vGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQ-VGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHhccchhhhHHHHHHHHH-hcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 37888888888888888843 332 22 345677778888888888888865421 111211113334456777
Q ss_pred HHHhcCCHhHHHHHHHHhhhc-------CCcHHHHHHHHHHHHccC--------------------ChHHHHHHHHHHH-
Q 048799 129 TYAKCGCIFSALKLFEDISVE-------RKNLVSWTSIISGFAMHG--------------------MGKEAVENFERMQ- 180 (331)
Q Consensus 129 ~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~--------------------~~~~a~~~~~~m~- 180 (331)
.+--.|.+++|.-...+-... -....++..+...|...| .++.|.++|.+-.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 777778888877654332221 123345555666665444 1334455554322
Q ss_pred ---hccCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHH---HhcCCCC-cHhhHHHHHHHHHhcCCHHHHHHHHhhccc
Q 048799 181 ---KVVLK-PNRVTFLSVLNACSHGGLVEEGLKFFDKMV---EECEVLP-DIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252 (331)
Q Consensus 181 ---~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 252 (331)
+.|-. .--..|..|...|.-.|+++.|+...+.-. +.+|-.. .-..+..+..++.-.|+++.|.+.|+....
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 11211 123467788888888888888887665432 2234333 335677788888888888888888776433
Q ss_pred C-------CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHh----h--cCCCccHHHHHHHHhhhccCcchHHHHHHHhh
Q 048799 253 E-------ITNVVVWRTLLGACSFHGNVEMGERVTRKILEM----E--RGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319 (331)
Q Consensus 253 ~-------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (331)
. .......-+|.+.|.-..++++|+.++.+-+.+ + ......+..|+.++...|..++|+.+.+.-.+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3 334556667888888888888888887776542 2 22335677888888888888888877766544
Q ss_pred c
Q 048799 320 R 320 (331)
Q Consensus 320 ~ 320 (331)
.
T Consensus 344 ~ 344 (639)
T KOG1130|consen 344 S 344 (639)
T ss_pred H
Confidence 3
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.10 E-value=0.0026 Score=49.87 Aligned_cols=53 Identities=6% Similarity=0.006 Sum_probs=25.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhcccCCc----cHHHHHHHHHHHhcCCchhHHHHHHHH
Q 048799 230 LIDMLGRAGRLEQAEKVASGIPSEIT----NVVVWRTLLGACSFHGNVEMGERVTRK 282 (331)
Q Consensus 230 l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~ 282 (331)
+...|.+.|.+..|..=++.+.+..| .......++.+|...|..++|.+....
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34445555555555555555544422 223444455555555555555554443
No 179
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.10 E-value=0.00046 Score=52.58 Aligned_cols=168 Identities=13% Similarity=0.050 Sum_probs=80.5
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhhcCCc----HHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHh-
Q 048799 125 CLIDTYAKCGCIFSALKLFEDISVERKN----LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS- 199 (331)
Q Consensus 125 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~- 199 (331)
..+..+...|++.+|...|+.+...-|+ ..+...++.++.+.|+++.|...+++.++.-......-+...+.+.+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 4455555666666666666666554221 23344455566666666666666666555321111111111111111
Q ss_pred ------------ccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHH
Q 048799 200 ------------HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC 267 (331)
Q Consensus 200 ------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~ 267 (331)
..+...+|...|+.+++. |=......+|.+.+..+... -...-..+..-|
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~~----------------yP~S~y~~~A~~~l~~l~~~--la~~e~~ia~~Y 151 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELIKR----------------YPNSEYAEEAKKRLAELRNR--LAEHELYIARFY 151 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHHHH----------------CcCchHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 112233444445544443 22223334444443333322 111112245667
Q ss_pred hcCCchhHHHHHHHHHHHhhcCCCc---cHHHHHHHHhhhccCcch
Q 048799 268 SFHGNVEMGERVTRKILEMERGYGG---DYVLMYNILAGVWRYGDA 310 (331)
Q Consensus 268 ~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a 310 (331)
.+.|.+..|..-++.+++.-|+++. ....++.++.+.|..+.+
T Consensus 152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 7888888888888888887777643 345566777777776633
No 180
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.08 E-value=5.3e-06 Score=41.74 Aligned_cols=29 Identities=34% Similarity=0.568 Sum_probs=18.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcc
Q 048799 155 SWTSIISGFAMHGMGKEAVENFERMQKVV 183 (331)
Q Consensus 155 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 183 (331)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666666554
No 181
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.07 E-value=3e-05 Score=46.96 Aligned_cols=55 Identities=18% Similarity=0.081 Sum_probs=24.1
Q ss_pred HHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 048799 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE 149 (331)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 149 (331)
.+...|++++|...|+++++..+. +..++..+..++...|++++|...|+++.+.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPD--NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444444444444444322 4444444444444444444444444444433
No 182
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.06 E-value=9.6e-05 Score=57.51 Aligned_cols=97 Identities=15% Similarity=0.103 Sum_probs=67.2
Q ss_pred HHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHH
Q 048799 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKE 171 (331)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 171 (331)
-+.+.+++.+|+..|.++++..+. +...|..-..+|.+.|.++.|.+-.+......| ...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~--nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT--NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 345667777777777777776433 667777777777777777777777777766655 35677777777777777777
Q ss_pred HHHHHHHHHhccCCCCHHHHHH
Q 048799 172 AVENFERMQKVVLKPNRVTFLS 193 (331)
Q Consensus 172 a~~~~~~m~~~~~~p~~~~~~~ 193 (331)
|++.|++.+. +.|+-.+|-.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHH
Confidence 7777777666 5566655543
No 183
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.04 E-value=0.0019 Score=49.27 Aligned_cols=173 Identities=14% Similarity=0.085 Sum_probs=73.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhccCCCC-chHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcch-hHHHHHHHHHHH
Q 048799 54 IIDGYTRMNRSNGALALFRRMVACEYTEP-SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH-IHVSNCLIDTYA 131 (331)
Q Consensus 54 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 131 (331)
....+...|++.+|...|+++.....-.| .......++.++.+.|+++.|...+++.++.-+..+. ..++..++.++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 34445566666666666666633221111 1223444555666666666666666666554333211 111111111111
Q ss_pred hc-----------CCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhc
Q 048799 132 KC-----------GCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200 (331)
Q Consensus 132 ~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 200 (331)
.. +...+|.. .+..++.-|=.+.-..+|...+..+... .-.. -..+...|.+
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~-------------~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~-e~~ia~~Y~~ 153 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIE-------------EFEELIKRYPNSEYAEEAKKRLAELRNR---LAEH-ELYIARFYYK 153 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHH-------------HHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHH-HHHHHHHHHC
T ss_pred HhCccchhcccChHHHHHHHH-------------HHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHH
Confidence 11 00111222 2333333333444444444444333221 0011 1124555667
Q ss_pred cCChHHHHHHHHHHHHhcCCCC-cHhhHHHHHHHHHhcCCHHHH
Q 048799 201 GGLVEEGLKFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQA 243 (331)
Q Consensus 201 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 243 (331)
.|.+..|..-++.+++.+.-.+ .......++.+|.+.|..+.|
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 7777777777777766522221 123445556666666666543
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.04 E-value=0.00039 Score=47.48 Aligned_cols=93 Identities=17% Similarity=0.121 Sum_probs=50.8
Q ss_pred HHHHHHccCChHHHHHHHHHHHhccCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCC-cHhhHHHHHHHHH
Q 048799 159 IISGFAMHGMGKEAVENFERMQKVVLKPN--RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP-DIKHYGCLIDMLG 235 (331)
Q Consensus 159 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 235 (331)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++....+.-.+ +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455566677777777776666654433 23444555666666777777777766665411100 1222222334556
Q ss_pred hcCCHHHHHHHHhhcc
Q 048799 236 RAGRLEQAEKVASGIP 251 (331)
Q Consensus 236 ~~g~~~~A~~~~~~~~ 251 (331)
..|+.++|..++-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6667666666665444
No 185
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.02 E-value=0.0049 Score=50.19 Aligned_cols=283 Identities=14% Similarity=0.132 Sum_probs=186.9
Q ss_pred HHHHHHHHHH--HcCCHHHHHHHHhhCC---CCCchhHHHHHHH--HHhcCChhHHHHHHHHHHhccCCCCchHHHH---
Q 048799 19 TWNVMITGLV--KWGELEYARSLFEEMP---CRNVVSWTGIIDG--YTRMNRSNGALALFRRMVACEYTEPSEITIL--- 88 (331)
Q Consensus 19 ~~~~l~~~~~--~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 88 (331)
.|..|-.++. -.|+-..|.++-.+.. ..|....-.|+.+ -.-.|+++.|.+-|+.|. .|+.|-.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl------~dPEtRllGL 157 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAML------DDPETRLLGL 157 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHh------cChHHHHHhH
Confidence 4666655543 4688888888877654 3455555555544 345799999999999993 2333333
Q ss_pred -HHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc---CCcHH--HHHHHHHH
Q 048799 89 -AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE---RKNLV--SWTSIISG 162 (331)
Q Consensus 89 -~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~--~~~~l~~~ 162 (331)
.|.-..-+.|+.+.|.++-+..-...+. -...+..++...+..|+|+.|+++.+.-... .++.. .-..|+.+
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~Ap~--l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtA 235 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEKAPQ--LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTA 235 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhccC--CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Confidence 3333445789999999998888777554 5678889999999999999999999876544 33322 12223322
Q ss_pred H---HccCChHHHHHHHHHHHhccCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcC
Q 048799 163 F---AMHGMGKEAVENFERMQKVVLKPNRVT-FLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238 (331)
Q Consensus 163 ~---~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 238 (331)
- .-..+...|...-.+..+ +.|+..- -..-..++.+.|+..++-.+++.+.+. .|.+.++...+ +.+.|
T Consensus 236 kA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~g 308 (531)
T COG3898 236 KAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSG 308 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCC
Confidence 1 123356677766655544 5565432 223456688899999999999999875 55555544333 45556
Q ss_pred CHHHH--H--HHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhh-hccCcchHHH
Q 048799 239 RLEQA--E--KVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG-VWRYGDAERL 313 (331)
Q Consensus 239 ~~~~A--~--~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~ 313 (331)
+.... . +-+..|.. .+......+..+-...|++..|..-.+.+....|.. ..|..+...-.. .|+-+++...
T Consensus 309 dta~dRlkRa~~L~slk~--nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 309 DTALDRLKRAKKLESLKP--NNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred CcHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHH
Confidence 54322 1 12333333 256777777888888999999988888888877876 777777776654 4888888777
Q ss_pred HHHHhh
Q 048799 314 RRVVDE 319 (331)
Q Consensus 314 ~~~~~~ 319 (331)
+.+-.+
T Consensus 386 lAqav~ 391 (531)
T COG3898 386 LAQAVK 391 (531)
T ss_pred HHHHhc
Confidence 766544
No 186
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.00 E-value=0.00016 Score=60.59 Aligned_cols=116 Identities=14% Similarity=0.038 Sum_probs=54.3
Q ss_pred CchHHHHHHHHHHhhcCchhHHHHHHhhhhhcC--CCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc--CCcHHHHH
Q 048799 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG--FNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE--RKNLVSWT 157 (331)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 157 (331)
.+......+++.+....+++.+..++.+..... ... -+.+..++++.|.+.|..++++.++..=... -||..++|
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~-~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYL-LPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccc-cCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344444445555555555555555555444331 111 1223335555555555555555555433222 24555555
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 048799 158 SIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198 (331)
Q Consensus 158 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 198 (331)
.++..+.+.|++..|.++...|...+...+..|+..-+.+|
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 55555555555555555555554444444444444333333
No 187
>PRK15331 chaperone protein SicA; Provisional
Probab=97.97 E-value=7.4e-05 Score=53.20 Aligned_cols=84 Identities=12% Similarity=0.027 Sum_probs=40.3
Q ss_pred HhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHH
Q 048799 235 GRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERL 313 (331)
Q Consensus 235 ~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 313 (331)
...|++++|..+|+-+... .-+..-|..|..++...+++++|+..|..+..+.++++..+...+..+...|+.+.|...
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHH
Confidence 3445555555555444332 223334444444444455555555555555544444444455555555555555555555
Q ss_pred HHHHh
Q 048799 314 RRVVD 318 (331)
Q Consensus 314 ~~~~~ 318 (331)
|+...
T Consensus 128 f~~a~ 132 (165)
T PRK15331 128 FELVN 132 (165)
T ss_pred HHHHH
Confidence 44443
No 188
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.97 E-value=0.012 Score=52.90 Aligned_cols=222 Identities=11% Similarity=0.079 Sum_probs=135.9
Q ss_pred HHcCCHHHHHHHHhhCCC--CCchhHHHHHHH--HHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHH
Q 048799 28 VKWGELEYARSLFEEMPC--RNVVSWTGIIDG--YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNC 103 (331)
Q Consensus 28 ~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 103 (331)
...+++..|..-..++.+ ||.. |...+.+ +.+.|+.++|..+++.. ...+. .|..|...+-.+|...++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~-~~~~~-~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEAL-YGLKG-TDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhh-ccCCC-CchHHHHHHHHHHHHHhhhhHH
Confidence 356777778777777653 4432 3333333 57889999999888876 43332 3777888888899999999999
Q ss_pred HHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHcc-CC---------hHHH
Q 048799 104 QLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMH-GM---------GKEA 172 (331)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~-~~---------~~~a 172 (331)
..+|+++.+.. | +......+..+|.+.+.+.+-.+.--++-+.-| +...+=.+++...+. .. ..-|
T Consensus 97 ~~~Ye~~~~~~--P-~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQKY--P-SEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhhC--C-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 99999988874 4 455566777888888877655544444433333 333322333333221 11 1234
Q ss_pred HHHHHHHHhcc-CCCCHHHHHHHHHHHhccCChHHHHHHHHH-HHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhc
Q 048799 173 VENFERMQKVV-LKPNRVTFLSVLNACSHGGLVEEGLKFFDK-MVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI 250 (331)
Q Consensus 173 ~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 250 (331)
.+.++.+.+.+ ..-+..-...-...+...|++++|.+++.. ..+. -..-+...-+.-+..+...+++.+..++-.++
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 44555555443 111222222223344567889999998843 3332 33334555556677888889998888888887
Q ss_pred ccCCcc
Q 048799 251 PSEITN 256 (331)
Q Consensus 251 ~~~~p~ 256 (331)
....+|
T Consensus 253 l~k~~D 258 (932)
T KOG2053|consen 253 LEKGND 258 (932)
T ss_pred HHhCCc
Confidence 776444
No 189
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.94 E-value=0.0095 Score=50.63 Aligned_cols=185 Identities=8% Similarity=0.011 Sum_probs=133.0
Q ss_pred hhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcC---CHhHHHHHHHHhhhcC--CcHHHHHHHHHHHHccCChHHHHH
Q 048799 100 VRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG---CIFSALKLFEDISVER--KNLVSWTSIISGFAMHGMGKEAVE 174 (331)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~ 174 (331)
.+++..+++..+..-... +..+|..+...--..- ..+.....++++.... .-..+|-.++..-.+..-.+.|..
T Consensus 309 t~e~~~~yEr~I~~l~~~-~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKE-NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHH
Confidence 345556666655543333 4444444333222222 2556666777665542 223567778888888888999999
Q ss_pred HHHHHHhccCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC
Q 048799 175 NFERMQKVVLKP-NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253 (331)
Q Consensus 175 ~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 253 (331)
+|.++.+.+..+ .....++++..+| .++.+-|.++|+.=.+.+|- ++.--...++-+...|+-..|..+|++....
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 999999988777 6778888888776 58899999999987775333 3444566778888999999999999998877
Q ss_pred --Cc--cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc
Q 048799 254 --IT--NVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288 (331)
Q Consensus 254 --~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 288 (331)
.| ....|..++.--..-|+...+.++-++....-|
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 33 358899999999999999999999888877555
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.94 E-value=0.001 Score=45.47 Aligned_cols=88 Identities=18% Similarity=0.025 Sum_probs=40.5
Q ss_pred HHhhcCchhHHHHHHhhhhhcCCCcch-hHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc---H-HHHHHHHHHHHccC
Q 048799 93 AIWQNGDVRNCQLIHGYGEKRGFNAFH-IHVSNCLIDTYAKCGCIFSALKLFEDISVERKN---L-VSWTSIISGFAMHG 167 (331)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~-~~~~~l~~~~~~~~ 167 (331)
++-..|+.++|+.+|++.+..|....+ ...+..+...+...|++++|..++++.....|+ . .....+.-++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 334445555555555555554443211 223444555555555555555555555444332 1 11111222444555
Q ss_pred ChHHHHHHHHHHH
Q 048799 168 MGKEAVENFERMQ 180 (331)
Q Consensus 168 ~~~~a~~~~~~m~ 180 (331)
+.++|++.+-...
T Consensus 90 r~~eAl~~~l~~l 102 (120)
T PF12688_consen 90 RPKEALEWLLEAL 102 (120)
T ss_pred CHHHHHHHHHHHH
Confidence 5555555554433
No 191
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.94 E-value=2.6e-05 Score=48.53 Aligned_cols=55 Identities=16% Similarity=0.032 Sum_probs=30.3
Q ss_pred HHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhc
Q 048799 266 ACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320 (331)
Q Consensus 266 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (331)
.|.+.+++++|.++++.+++.+|+++..+...+.++...|++++|...++...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555555443
No 192
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.002 Score=49.49 Aligned_cols=134 Identities=9% Similarity=-0.006 Sum_probs=94.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHH-----
Q 048799 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCL----- 230 (331)
Q Consensus 156 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----- 230 (331)
.+.++..+.-.|.+.-...++++.++...+.++.....|++.-.+.|+.+.|...|+...+. .-+.+....+.+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhh
Confidence 44556666667788888888888888666667777788888888889999998888877665 333344333333
Q ss_pred HHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCC
Q 048799 231 IDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 290 (331)
Q Consensus 231 ~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 290 (331)
...|.-.+++..|...+.++... ..++...|.-.-+..-.|+..+|.+..+.+.+..|..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 33456677888888888887776 3345555554445555688888888888888877764
No 193
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.0017 Score=53.02 Aligned_cols=273 Identities=12% Similarity=-0.030 Sum_probs=158.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhc
Q 048799 21 NVMITGLVKWGELEYARSLFEEMPC---RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQN 97 (331)
Q Consensus 21 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (331)
......+.+..++..|+..+....+ .++.-|..-+..+...|++++|+--.+.-++... -.+....-.-+++...
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd--~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD--GFSKGQLREGQCHLAL 130 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCC--Cccccccchhhhhhhh
Confidence 3445566677778888887776552 3445566666667777777777766654422111 1112233333333333
Q ss_pred CchhHHHHHHh---------------hhhhcCCCcchhHHHHHH-HHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHH
Q 048799 98 GDVRNCQLIHG---------------YGEKRGFNAFHIHVSNCL-IDTYAKCGCIFSALKLFEDISVERK-NLVSWTSII 160 (331)
Q Consensus 98 ~~~~~a~~~~~---------------~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~ 160 (331)
++..+|.+.++ ........++.-..+-.| ..++.-.|++++|...--.+.+.++ +....-.-.
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg 210 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRG 210 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcc
Confidence 33333333222 222221111122222222 4567778899988888776665543 333222222
Q ss_pred HHHHccCChHHHHHHHHHHHhccCCCCHHHHHHH-------------HHHHhccCChHHHHHHHHHHHHh--cCCCCcHh
Q 048799 161 SGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV-------------LNACSHGGLVEEGLKFFDKMVEE--CEVLPDIK 225 (331)
Q Consensus 161 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-------------~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 225 (331)
.++...++.+.+...|++.+.. .|+...-... .+-..+.|++..|.+.|.+.+.. .+..|+..
T Consensus 211 ~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 211 LCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred cccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 3455678889999999888774 3654332211 12344778899999999888742 02333455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcccCCccH---HHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHH
Q 048799 226 HYGCLIDMLGRAGRLEQAEKVASGIPSEITNV---VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300 (331)
Q Consensus 226 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 300 (331)
.|........+.|+..+|+.-.+.+... |+ ..+..-..++...+++++|.+-++++.+...+ ......+..+
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A 363 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREA 363 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHH
Confidence 6666666778889999999988888876 43 33333345666778999999999998886554 3444444443
No 194
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.92 E-value=0.00014 Score=60.88 Aligned_cols=118 Identities=8% Similarity=0.021 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC----CcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHH
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVER----KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSV 194 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 194 (331)
+......+++......+++.+..++.+....+ .-..+..+++..|.+.|..+.++.+++.=...|+=||..|++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 55566777888888888999999988886552 12345669999999999999999999988889999999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhc
Q 048799 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237 (331)
Q Consensus 195 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (331)
+..+.+.|++..|.++...|..+ ....+..++..-+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 99999999999999999998877 6666777766666666554
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.91 E-value=8.5e-05 Score=45.38 Aligned_cols=60 Identities=12% Similarity=0.187 Sum_probs=36.5
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHH
Q 048799 200 HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWR 261 (331)
Q Consensus 200 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 261 (331)
..|++++|.++|+++.+. .+-+...+..++.+|.+.|++++|.++++++....|+...|.
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 456677777777776654 222556666666777777777777777777666655533333
No 196
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.90 E-value=0.00027 Score=55.79 Aligned_cols=102 Identities=8% Similarity=0.055 Sum_probs=69.5
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhcCCCC-cHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc----cHHHHHHHH
Q 048799 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT----NVVVWRTLL 264 (331)
Q Consensus 190 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~ 264 (331)
.|...+..+.+.|++++|...|+.+.+.+.-.+ ....+..+...|...|++++|...|+.+....| ....+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 455444444556788888888888876521111 124666777778888888888888888776533 245566666
Q ss_pred HHHhcCCchhHHHHHHHHHHHhhcCCC
Q 048799 265 GACSFHGNVEMGERVTRKILEMERGYG 291 (331)
Q Consensus 265 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 291 (331)
.++...|+.+.|.+.|+.+++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 777788888888888888888777753
No 197
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00048 Score=53.95 Aligned_cols=101 Identities=10% Similarity=-0.040 Sum_probs=76.3
Q ss_pred CCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcC---CHhHHHHHHHHhhhcCC-cHHHH
Q 048799 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG---CIFSALKLFEDISVERK-NLVSW 156 (331)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~-~~~~~ 156 (331)
+-|...|-.|..+|...|+.+.|...|....+...+ ++..+..+..++.... ...++..+|+++...+| ++.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~--n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD--NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 456778888888888888888888888888877544 6777777777765543 35677888888887766 56666
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhcc
Q 048799 157 TSIISGFAMHGMGKEAVENFERMQKVV 183 (331)
Q Consensus 157 ~~l~~~~~~~~~~~~a~~~~~~m~~~~ 183 (331)
..+...+...|++.+|...++.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 667777888888888888888888753
No 198
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.85 E-value=0.011 Score=48.34 Aligned_cols=107 Identities=17% Similarity=0.198 Sum_probs=73.5
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhc
Q 048799 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269 (331)
Q Consensus 190 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~ 269 (331)
+.+..+.-+...|+...|.++-.+. .+ |+-..|..-+.+|+..+++++-.++... . .++..|..++.+|.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s--k--KsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS--K--KSPIGYEPFVEACLK 249 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC--C--CCCCChHHHHHHHHH
Confidence 4444555566677777666654433 33 6777888888888888888887776543 2 245677888888888
Q ss_pred CCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHH
Q 048799 270 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLR 314 (331)
Q Consensus 270 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 314 (331)
.|+..+|..+..++ . +..-+..|.++|.+.+|.+.-
T Consensus 250 ~~~~~eA~~yI~k~--------~-~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 250 YGNKKEASKYIPKI--------P-DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCCHHHHHHHHHhC--------C-hHHHHHHHHHCCCHHHHHHHH
Confidence 88888888777762 1 255666777777777776553
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.83 E-value=0.00013 Score=57.58 Aligned_cols=98 Identities=9% Similarity=-0.022 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhcccCCcc----HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCC---ccHHHH
Q 048799 225 KHYGCLIDMLGRAGRLEQAEKVASGIPSEITN----VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG---GDYVLM 297 (331)
Q Consensus 225 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l 297 (331)
..|..-...+.+.|++++|...|+.+....|+ +..+..+..+|...|++++|...|+.+.+..|+++ ..+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555555556789999999999999888554 35777889999999999999999999999878754 455667
Q ss_pred HHHHhhhccCcchHHHHHHHhhccc
Q 048799 298 YNILAGVWRYGDAERLRRVVDERNA 322 (331)
Q Consensus 298 ~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (331)
+.++...|+.++|...++.+.+...
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 8889999999999999999877543
No 200
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.81 E-value=0.014 Score=48.59 Aligned_cols=69 Identities=16% Similarity=0.300 Sum_probs=54.6
Q ss_pred HHhhhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCCc---hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048799 7 KLFDELP--ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNV---VSWTGIIDGYTRMNRSNGALALFRRMV 75 (331)
Q Consensus 7 ~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~ 75 (331)
++=+++. +.|+.+|-.|+.-+...|.+++..+++++|..|-+ .+|..-+.+-...+++..+..+|.+.+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 4445555 34788999999999999999999999999997754 467777777667778888888887773
No 201
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.80 E-value=3.4e-05 Score=38.69 Aligned_cols=28 Identities=36% Similarity=0.558 Sum_probs=22.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHh
Q 048799 190 TFLSVLNACSHGGLVEEGLKFFDKMVEE 217 (331)
Q Consensus 190 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 217 (331)
||+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 6788888888888888888888888765
No 202
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.80 E-value=0.00052 Score=51.20 Aligned_cols=99 Identities=17% Similarity=0.330 Sum_probs=68.6
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHc-----cCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhcc-------------
Q 048799 140 LKLFEDISVERKNLVSWTSIISGFAM-----HGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHG------------- 201 (331)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~------------- 201 (331)
...|+.......+-.+|..++..|.+ .|..+=....++.|.+.|+.-|..+|+.|++.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 34455444445566677777776653 356666667778888888888888888888766532
Q ss_pred ---CChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCC
Q 048799 202 ---GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239 (331)
Q Consensus 202 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 239 (331)
.+-+-|++++++|... |+-||..++..+++.+.+.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 2235678888888777 888888888888888866554
No 203
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.0045 Score=47.64 Aligned_cols=126 Identities=12% Similarity=-0.031 Sum_probs=58.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC--CccH-----HHHHHHHHH
Q 048799 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE--ITNV-----VVWRTLLGA 266 (331)
Q Consensus 194 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~-----~~~~~l~~~ 266 (331)
++.++...|.+.-....+.+.++. .-+.++.....|++.-.+.|+.+.|...|++..+. ..+. .........
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 444444445555555555555543 33334455555555555555555555555543322 1111 111222223
Q ss_pred HhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhc
Q 048799 267 CSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320 (331)
Q Consensus 267 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (331)
|..++++..|...+.++.+.+|.++...++-+.++.-.|+..+|.+.++.|.+.
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred eecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444455555555555555555555444444444444455555555555555443
No 204
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.77 E-value=0.015 Score=47.57 Aligned_cols=273 Identities=10% Similarity=0.028 Sum_probs=150.4
Q ss_pred CHHHHHHHHhhCCCCCchhHHHHHHHHH--hcCChhHHHHHHHHHHhccCCCCchHHHHHHHHH--HhhcCchhHHHHHH
Q 048799 32 ELEYARSLFEEMPCRNVVSWTGIIDGYT--RMNRSNGALALFRRMVACEYTEPSEITILAVFPA--IWQNGDVRNCQLIH 107 (331)
Q Consensus 32 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~ 107 (331)
....+.+.|..-++ -..|..|-.++. -.|+-..|.++-.+. . .-+..|......++.+ -.-.|+.+.|.+-|
T Consensus 68 sP~t~~Ryfr~rKR--drgyqALStGliAagAGda~lARkmt~~~-~-~llssDqepLIhlLeAQaal~eG~~~~Ar~kf 143 (531)
T COG3898 68 SPYTARRYFRERKR--DRGYQALSTGLIAAGAGDASLARKMTARA-S-KLLSSDQEPLIHLLEAQAALLEGDYEDARKKF 143 (531)
T ss_pred CcHHHHHHHHHHHh--hhHHHHHhhhhhhhccCchHHHHHHHHHH-H-hhhhccchHHHHHHHHHHHHhcCchHHHHHHH
Confidence 34455566655432 224555555543 456666776666554 1 1133444444444443 34568888888888
Q ss_pred hhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc-HHHHHHHHHHHHccCChHHHHHHHHHHHhcc-CC
Q 048799 108 GYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKEAVENFERMQKVV-LK 185 (331)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~ 185 (331)
+-|...... -.--...|.-.--+.|+.+.|..+-++.-..-|. .-.+...+...+..|+|+.|+++++.-.... +.
T Consensus 144 eAMl~dPEt--RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie 221 (531)
T COG3898 144 EAMLDDPET--RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE 221 (531)
T ss_pred HHHhcChHH--HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc
Confidence 888753111 0111112222233567788888777777666554 4567777888888888888888887665443 33
Q ss_pred CCHH--HHHHHHHHHh---ccCChHHHHHHHHHHHHhcCCCCcHhhH-HHHHHHHHhcCCHHHHHHHHhhcccCCccHHH
Q 048799 186 PNRV--TFLSVLNACS---HGGLVEEGLKFFDKMVEECEVLPDIKHY-GCLIDMLGRAGRLEQAEKVASGIPSEITNVVV 259 (331)
Q Consensus 186 p~~~--~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 259 (331)
++.. .-..|+.+-. -.-+...|...-.+.. .+.|+..-- ..-..++.+.|++.++-.+++.+-+..|++.+
T Consensus 222 ~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i 298 (531)
T COG3898 222 KDVAERSRAVLLTAKAMSLLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI 298 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH
Confidence 4432 1222222211 1233455555444443 345554322 22346678888888888888888777677766
Q ss_pred HHHHHHHHhcCCchhHH-HHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHH
Q 048799 260 WRTLLGACSFHGNVEMG-ERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315 (331)
Q Consensus 260 ~~~l~~~~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 315 (331)
+...+. .+.|+.... .+-.+++.++.|++......+..+-...|++..|..--+
T Consensus 299 a~lY~~--ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Ae 353 (531)
T COG3898 299 ALLYVR--ARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAE 353 (531)
T ss_pred HHHHHH--hcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHH
Confidence 643332 344443211 222333334667777777777777777777666654433
No 205
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.75 E-value=0.01 Score=48.92 Aligned_cols=169 Identities=15% Similarity=0.099 Sum_probs=105.9
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC----C-cHHHHHHHHHHHHc---cCChHHHHHHHHHHHhccCCCCHHH
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVER----K-NLVSWTSIISGFAM---HGMGKEAVENFERMQKVVLKPNRVT 190 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~ 190 (331)
+..+...++-+|....+++...++.+.+...+ + ....-....-++.+ .|+.++|++++..+......+++.|
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34444566667888899999999998886552 1 11222233445556 7889999999988666666778888
Q ss_pred HHHHHHHHhc---------cCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHH----HHHHHH---hhcc-cC
Q 048799 191 FLSVLNACSH---------GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE----QAEKVA---SGIP-SE 253 (331)
Q Consensus 191 ~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~~-~~ 253 (331)
|..+...|-. ....++|...|.+.-+ +.|+...--.++..+.-.|... +..++- ..+. ..
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence 8877776532 2236677777776553 3455443333333333344321 222222 1111 11
Q ss_pred -----CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCC
Q 048799 254 -----ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 290 (331)
Q Consensus 254 -----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 290 (331)
..+-..+.+++.+..-.|++++|.+.++++.+..|..
T Consensus 297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 3455667778888999999999999999999877654
No 206
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.74 E-value=0.011 Score=51.81 Aligned_cols=191 Identities=15% Similarity=0.036 Sum_probs=110.3
Q ss_pred HHHHHHHHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHH------HHHHHhhcCchhHHHHH
Q 048799 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILA------VFPAIWQNGDVRNCQLI 106 (331)
Q Consensus 33 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------l~~~~~~~~~~~~a~~~ 106 (331)
+++|.+..+. .|.+..|..|.......-.++-|...|-+...-.|++.-...-.. -...-.--|++++|+++
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 4455555544 466677888888777777788888777766322333211110000 01112234778888888
Q ss_pred HhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC---CcHHHHHHHHHHHHccCChHHHHHHHHHHHhcc
Q 048799 107 HGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER---KNLVSWTSIISGFAMHGMGKEAVENFERMQKVV 183 (331)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 183 (331)
|-.+-.+ ...+..+.+.|+|-...++++.-.... .-..+|+.+...+.....|++|.+.|..-..
T Consensus 757 yld~drr----------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-- 824 (1189)
T KOG2041|consen 757 YLDADRR----------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-- 824 (1189)
T ss_pred hhccchh----------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 7665443 235677888889888888877543222 2246788888888888888888888865322
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhc
Q 048799 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI 250 (331)
Q Consensus 184 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 250 (331)
-...+.++.+..++++-+.+...+ +.+....-.+.+++.+.|.-++|.+.+-+-
T Consensus 825 -------~e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 825 -------TENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred -------hHhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 122445555555555444433322 334444555566666666666666555443
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.74 E-value=0.00011 Score=45.58 Aligned_cols=61 Identities=13% Similarity=0.041 Sum_probs=45.2
Q ss_pred HHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCc
Q 048799 232 DMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG 292 (331)
Q Consensus 232 ~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 292 (331)
..|.+.+++++|.++++.+... +.++..|.....++...|++++|.+.++.+.+..|+++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 4567778888888888877777 335566777777788888888888888888887776643
No 208
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.69 E-value=0.002 Score=46.27 Aligned_cols=69 Identities=19% Similarity=0.290 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHH-----hccCCCCHHH
Q 048799 122 VSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQ-----KVVLKPNRVT 190 (331)
Q Consensus 122 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~-----~~~~~p~~~~ 190 (331)
+...++..+...|++++|..+.+.+....| +...|..+|.+|...|+...|++.|+++. +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344555666666777777777766666555 45566667777777777777776666553 2356665554
No 209
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.68 E-value=0.0011 Score=43.87 Aligned_cols=80 Identities=13% Similarity=0.012 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhccCC-CCchHHHHHHHHHHhhcC--------chhHHHHHHhhhhhcCCCcchhH
Q 048799 51 WTGIIDGYTRMNRSNGALALFRRMVACEYT-EPSEITILAVFPAIWQNG--------DVRNCQLIHGYGEKRGFNAFHIH 121 (331)
Q Consensus 51 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 121 (331)
....|..+...+++...-.+|+.+ +++|+ .|+..+|+.++.+.++.. ..-..+.+|+.++..+..| +..
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqsl-kRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP-~~e 105 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSL-KRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKP-NDE 105 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHH-HhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCC-cHH
Confidence 344555566668888888888888 66777 788888888887765443 2334455666666666666 666
Q ss_pred HHHHHHHHHHh
Q 048799 122 VSNCLIDTYAK 132 (331)
Q Consensus 122 ~~~~l~~~~~~ 132 (331)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 66666655543
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.65 E-value=0.01 Score=51.60 Aligned_cols=89 Identities=8% Similarity=-0.047 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCcc----------H
Q 048799 225 KHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD----------Y 294 (331)
Q Consensus 225 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----------~ 294 (331)
.+...+...+.+...+.-|.++|..+-.. ..+++.....+++++|..+.++.-+..|+.-.. |
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~-------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrF 820 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL-------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRF 820 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH-------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhH
Confidence 33344444444455555555555555432 234455555566666665555554443332111 1
Q ss_pred HHHHHHHhhhccCcchHHHHHHHhhc
Q 048799 295 VLMYNILAGVWRYGDAERLRRVVDER 320 (331)
Q Consensus 295 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (331)
...-.+|.+.|+..+|.++++++...
T Consensus 821 eEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 821 EEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 12223566666666666666665443
No 211
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.57 E-value=0.00011 Score=40.29 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHH
Q 048799 258 VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299 (331)
Q Consensus 258 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 299 (331)
.++..+...|...|++++|+++|+++++..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788899999999999999999999999999887776653
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.56 E-value=0.00026 Score=44.61 Aligned_cols=60 Identities=17% Similarity=0.111 Sum_probs=27.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcccC-------Ccc-HHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 226 HYGCLIDMLGRAGRLEQAEKVASGIPSE-------ITN-VVVWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 226 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
+++.+...|...|++++|...|+++... .|+ ..++..+..++...|++++|++.++++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3344444444444444444444443322 111 33444555555555555555555555544
No 213
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.54 E-value=0.00029 Score=58.61 Aligned_cols=99 Identities=12% Similarity=-0.019 Sum_probs=73.3
Q ss_pred CcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccH----HHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHH
Q 048799 222 PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNV----VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297 (331)
Q Consensus 222 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 297 (331)
.+...++.+..+|...|++++|...|+++.+..|+. .+|..+..+|...|+.++|+..++++++..+ ..|..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn---~~f~~i 149 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYN---LKFSTI 149 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc---hhHHHH
Confidence 367788999999999999999999999988886663 3589999999999999999999999998621 223221
Q ss_pred HH--HHhhhccCcchHHHHHHHhhcccc
Q 048799 298 YN--ILAGVWRYGDAERLRRVVDERNAL 323 (331)
Q Consensus 298 ~~--~~~~~g~~~~a~~~~~~~~~~~~~ 323 (331)
.. .+....+..+..++++...+-|.+
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 11 122334455677777777776653
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.52 E-value=0.0004 Score=43.71 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhhc----C---Cc-HHHHHHHHHHHHccCChHHHHHHHHHH
Q 048799 121 HVSNCLIDTYAKCGCIFSALKLFEDISVE----R---KN-LVSWTSIISGFAMHGMGKEAVENFERM 179 (331)
Q Consensus 121 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~---~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m 179 (331)
.+++.+..+|...|++++|+..|++.... + |. ..+++.+..++...|++++|++.+++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444555555555555555555444322 1 11 233444444444555555555544443
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.50 E-value=0.0006 Score=48.97 Aligned_cols=69 Identities=20% Similarity=0.138 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhh-----ccccCCC
Q 048799 258 VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE-----RNALKFP 326 (331)
Q Consensus 258 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~ 326 (331)
.....++..+...|+++.|..+++.+...+|-+...|..++.+|...|+..+|.++++.+.. .|+.|.|
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 34555677778889999999999999999998888899999999999999999998887743 3655543
No 216
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.50 E-value=0.0026 Score=43.93 Aligned_cols=53 Identities=13% Similarity=0.195 Sum_probs=44.8
Q ss_pred cCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHH
Q 048799 183 VLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235 (331)
Q Consensus 183 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 235 (331)
...|+..+..+++.+|+..|++..|.++++...+.++++.+..+|..|++-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 46788899999999999999999999999999998888878888888886443
No 217
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.49 E-value=0.028 Score=43.38 Aligned_cols=176 Identities=13% Similarity=0.073 Sum_probs=87.5
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhhcCC----cHHHHHHHHHHHHccCChHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHh
Q 048799 125 CLIDTYAKCGCIFSALKLFEDISVERK----NLVSWTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFLSVLNACS 199 (331)
Q Consensus 125 ~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~ 199 (331)
.-+..-.+.|++++|.+.|+.+....| ...+--.++-++.+.++++.|+..+++..... -.||. -|..-+.+.+
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs 117 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLS 117 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHH
Confidence 344455667778888887777766543 23344455566777777888877777766643 22222 2333333332
Q ss_pred c-------cCC---hHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhc
Q 048799 200 H-------GGL---VEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269 (331)
Q Consensus 200 ~-------~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~ 269 (331)
. ..+ ...|..-|++++++ -|+..- ..+|..-+..+... -...=..+.+-|.+
T Consensus 118 ~~~~i~~~~rDq~~~~~A~~~f~~~i~r---yPnS~Y-------------a~dA~~~i~~~~d~--LA~~Em~IaryY~k 179 (254)
T COG4105 118 YFFQIDDVTRDQSAARAAFAAFKELVQR---YPNSRY-------------APDAKARIVKLNDA--LAGHEMAIARYYLK 179 (254)
T ss_pred HhccCCccccCHHHHHHHHHHHHHHHHH---CCCCcc-------------hhhHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 1 112 22344444444443 122110 00111111111000 00001123455667
Q ss_pred CCchhHHHHHHHHHHHhhcCCCc---cHHHHHHHHhhhccCcchHHHHHHHhh
Q 048799 270 HGNVEMGERVTRKILEMERGYGG---DYVLMYNILAGVWRYGDAERLRRVVDE 319 (331)
Q Consensus 270 ~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (331)
.|.+..|..-++.+++.-|+... .+..+..+|...|-.++|.+.-+-+..
T Consensus 180 r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 180 RGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred hcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 77777777777777765444433 334455667777777777766555433
No 218
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0029 Score=51.69 Aligned_cols=96 Identities=10% Similarity=0.033 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhh
Q 048799 225 KHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303 (331)
Q Consensus 225 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (331)
.++..+.-++.+.+++.+|.+........ ++|....-.=..++...|+++.|+..|++++++.|++-.+-..++.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45677788889999999999999988877 66777777788899999999999999999999999997777777776666
Q ss_pred hccCcc-hHHHHHHHhhc
Q 048799 304 VWRYGD-AERLRRVVDER 320 (331)
Q Consensus 304 ~g~~~~-a~~~~~~~~~~ 320 (331)
..+..+ ..++|..|-..
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 555444 36677777543
No 219
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.40 E-value=0.083 Score=46.75 Aligned_cols=27 Identities=11% Similarity=0.167 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHh
Q 048799 120 IHVSNCLIDTYAKCGCIFSALKLFEDI 146 (331)
Q Consensus 120 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 146 (331)
....-.+.+++...|.-++|.+.|-+.
T Consensus 852 s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 852 SELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred cchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 334445555666666666655555443
No 220
>PRK15331 chaperone protein SicA; Provisional
Probab=97.39 E-value=0.0078 Score=43.16 Aligned_cols=91 Identities=8% Similarity=-0.037 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCC
Q 048799 125 CLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGL 203 (331)
Q Consensus 125 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 203 (331)
...--+...|++++|..+|+-+...+| +..-|..|..++-..+++++|+..|......+. -|+..+-....++...|+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCC
Confidence 344445566777777777766654443 444555666666666777777777665544321 233334445666666777
Q ss_pred hHHHHHHHHHHHH
Q 048799 204 VEEGLKFFDKMVE 216 (331)
Q Consensus 204 ~~~a~~~~~~~~~ 216 (331)
.+.|...|....+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777766665
No 221
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.37 E-value=8.7e-05 Score=37.98 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=30.0
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHhhhccCcchH
Q 048799 279 VTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311 (331)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 311 (331)
+|+++++.+|+++.+|..++.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 367889999999999999999999999999886
No 222
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.35 E-value=0.043 Score=42.46 Aligned_cols=226 Identities=15% Similarity=0.024 Sum_probs=136.1
Q ss_pred CChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHH
Q 048799 62 NRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141 (331)
Q Consensus 62 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 141 (331)
+....+...+...............+......+...+++..+...+.........+.....+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44445555555442211110124455556666666777777776666665421111145556666677777777777777
Q ss_pred HHHHhhhcCCcH-HHHHHHHH-HHHccCChHHHHHHHHHHHhccC--CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 048799 142 LFEDISVERKNL-VSWTSIIS-GFAMHGMGKEAVENFERMQKVVL--KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE 217 (331)
Q Consensus 142 ~~~~~~~~~~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 217 (331)
.+.......++. ........ .+...|+++.+...+.+...... ......+......+...++.+.+...+......
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 777776543332 22222333 67778888888888887754211 012333444444456677888888888887763
Q ss_pred cCCCC-cHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCcc-HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcC
Q 048799 218 CEVLP-DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN-VVVWRTLLGACSFHGNVEMGERVTRKILEMERG 289 (331)
Q Consensus 218 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 289 (331)
.+. ....+..+...+...++++.|...+.......|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 197 --~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 197 --NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred --CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 222 3566777777778888888888888887776443 344444555555666788888888888876665
No 223
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.33 E-value=0.0092 Score=50.05 Aligned_cols=65 Identities=17% Similarity=0.064 Sum_probs=40.7
Q ss_pred cchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcH----HHHHHHHHHHHccCChHHHHHHHHHHHh
Q 048799 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNL----VSWTSIISGFAMHGMGKEAVENFERMQK 181 (331)
Q Consensus 117 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 181 (331)
|.+...++.+..+|.+.|++++|+..|++.....|+. .+|..+..+|...|+.++|++.+++.++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3355666666666666666666666666666555542 2466666666666666666666666655
No 224
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.29 E-value=0.028 Score=48.77 Aligned_cols=163 Identities=15% Similarity=0.096 Sum_probs=113.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcc-CCCC-----HHHHHHHHHHHhc----cCChHHHHHHHHHHHHhcCCCCcHh
Q 048799 156 WTSIISGFAMHGMGKEAVENFERMQKVV-LKPN-----RVTFLSVLNACSH----GGLVEEGLKFFDKMVEECEVLPDIK 225 (331)
Q Consensus 156 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 225 (331)
...+++...=.||-+.+++.+.+..+.+ +.-. ...|..++..++. ..+.+.|.++++.+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3445566667899999999998876543 2211 1234444444443 45678899999999875 46666
Q ss_pred hHHHH-HHHHHhcCCHHHHHHHHhhcccC-----CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHH-HH
Q 048799 226 HYGCL-IDMLGRAGRLEQAEKVASGIPSE-----ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL-MY 298 (331)
Q Consensus 226 ~~~~l-~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-l~ 298 (331)
.|... .+.+...|++++|.+.|+++... +.....+.-+...+.-.+++++|...+..+.+.+.-+...|.. .+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 66544 45677899999999999987653 3344556667778888999999999999999865554344433 34
Q ss_pred HHHhhhccC-------cchHHHHHHHhhcc
Q 048799 299 NILAGVWRY-------GDAERLRRVVDERN 321 (331)
Q Consensus 299 ~~~~~~g~~-------~~a~~~~~~~~~~~ 321 (331)
..+...|+. ++|.+++.++....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 456778888 88888888876643
No 225
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.28 E-value=0.054 Score=45.32 Aligned_cols=133 Identities=11% Similarity=0.060 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhh-HHHHH
Q 048799 154 VSWTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKH-YGCLI 231 (331)
Q Consensus 154 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~ 231 (331)
.+|...+....+..-.+.|..+|-++.+.| +.++...+++++..++ .|+..-|.++|+.-... -||... ....+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHH
Confidence 345566777777778889999999988888 6677788888888765 57888888888876653 234333 34556
Q ss_pred HHHHhcCCHHHHHHHHhhcccC-Ccc--HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCC
Q 048799 232 DMLGRAGRLEQAEKVASGIPSE-ITN--VVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 290 (331)
Q Consensus 232 ~~~~~~g~~~~A~~~~~~~~~~-~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 290 (331)
.-+...++-+.|..+|+...+. ..+ ...|..+|.--..-|+...+..+-+.+.+.-|..
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 6677889999999999977665 222 5778888888888888888888888887766653
No 226
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.27 E-value=0.054 Score=41.91 Aligned_cols=222 Identities=18% Similarity=0.041 Sum_probs=160.3
Q ss_pred cCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhh--c-CCcHHHHHHHHHHHHccCChHHHH
Q 048799 97 NGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV--E-RKNLVSWTSIISGFAMHGMGKEAV 173 (331)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~a~ 173 (331)
.+....+...+......................+...+++..+...+..... . ......+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 3455556666666555543211245667788889999999999999988874 2 345667777778888888999999
Q ss_pred HHHHHHHhccCCCCHHHHHHHHH-HHhccCChHHHHHHHHHHHHhcCC--CCcHhhHHHHHHHHHhcCCHHHHHHHHhhc
Q 048799 174 ENFERMQKVVLKPNRVTFLSVLN-ACSHGGLVEEGLKFFDKMVEECEV--LPDIKHYGCLIDMLGRAGRLEQAEKVASGI 250 (331)
Q Consensus 174 ~~~~~m~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 250 (331)
..+.........+. ........ .+...|+++.|...+.+.... .. ......+......+...++.+.+...+...
T Consensus 116 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 99999877443331 22222333 688999999999999998542 21 123344445555577889999999999999
Q ss_pred ccCCcc--HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhc
Q 048799 251 PSEITN--VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320 (331)
Q Consensus 251 ~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (331)
....++ ...+..+...+...++++.+...+.......|.....+..+...+...+..+++...+....+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888343 6778888889999999999999999999988875455666666666667788888777766553
No 227
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.26 E-value=0.0043 Score=46.46 Aligned_cols=87 Identities=9% Similarity=0.072 Sum_probs=51.6
Q ss_pred CCCchhHHHHHHHHHh-----cCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcC----------------chhHH
Q 048799 45 CRNVVSWTGIIDGYTR-----MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNG----------------DVRNC 103 (331)
Q Consensus 45 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a 103 (331)
..+-.+|..++..|.+ .|.++=....++.| .+-|+.-|..+|+.|++++=+.. +-+-|
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M-~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~ 122 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKM-DEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECA 122 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHH-HHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHH
Confidence 4555666666666653 35666666677777 66777777778877777764321 22334
Q ss_pred HHHHhhhhhcCCCcchhHHHHHHHHHHHhc
Q 048799 104 QLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133 (331)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (331)
++++++|...|+.| |..++..|++.+++.
T Consensus 123 i~lL~qME~~gV~P-d~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 123 IDLLEQMENNGVMP-DKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHHHHcCCCC-cHHHHHHHHHHhccc
Confidence 55555555555555 555555555555443
No 228
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.25 E-value=0.03 Score=48.59 Aligned_cols=160 Identities=21% Similarity=0.103 Sum_probs=68.8
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhhcC-C-cH------HHHHHHHHHHHc----cCChHHHHHHHHHHHhccCCCCHHHH
Q 048799 124 NCLIDTYAKCGCIFSALKLFEDISVER-K-NL------VSWTSIISGFAM----HGMGKEAVENFERMQKVVLKPNRVTF 191 (331)
Q Consensus 124 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~-~~------~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~ 191 (331)
..+++...-.|+-+.+++.+.+..+.. . .+ -.|...+..++. ....+.|.+++..+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 344555555555555555555543321 0 01 123333332222 23445555555555442 2443333
Q ss_pred HHH-HHHHhccCChHHHHHHHHHHHHhc-CCC-CcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHH-
Q 048799 192 LSV-LNACSHGGLVEEGLKFFDKMVEEC-EVL-PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGA- 266 (331)
Q Consensus 192 ~~l-~~~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~- 266 (331)
... .+.+...|++++|.+.|++..... ..+ .....+--++-.+.-.+++++|.+.|..+.+. ..+..+|..+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 222 233444555555555555433210 111 12223333444455555555555555555544 2333344433332
Q ss_pred HhcCCch-------hHHHHHHHHHHH
Q 048799 267 CSFHGNV-------EMGERVTRKILE 285 (331)
Q Consensus 267 ~~~~g~~-------~~a~~~~~~~~~ 285 (331)
+...|+. ++|.++++++..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 2344444 555555555544
No 229
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.046 Score=41.81 Aligned_cols=58 Identities=7% Similarity=0.076 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhCC---CCCch------hHHHHHHHHHhcCChhHHHHHHHHH
Q 048799 17 LVTWNVMITGLVKWGELEYARSLFEEMP---CRNVV------SWTGIIDGYTRMNRSNGALALFRRM 74 (331)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~ 74 (331)
...|..-..+|....++++|...+.+.. +.|.. +|...+-..-....+.++..++++.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKA 97 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKA 97 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3457777788888899999888777655 22222 3333333334444555555555554
No 230
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.24 E-value=0.01 Score=41.55 Aligned_cols=72 Identities=14% Similarity=0.062 Sum_probs=51.6
Q ss_pred HHHHHhcCCHHHHHHHHhhcccCCc----cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCcc-HHHHHHHHh
Q 048799 231 IDMLGRAGRLEQAEKVASGIPSEIT----NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD-YVLMYNILA 302 (331)
Q Consensus 231 ~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~l~~~~~ 302 (331)
.....+.|++++|.+.|+.+....| ....-..++.+|.+.|++++|...+++.++++|.++.+ |..+..++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3445677888888888888877733 34556667888888899999999999999988877643 444444433
No 231
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.22 E-value=0.079 Score=42.67 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=26.7
Q ss_pred HHcCCHHHHHHHHhhCCC----CCch-------hHHHHHHHHHhcC-ChhHHHHHHHHH
Q 048799 28 VKWGELEYARSLFEEMPC----RNVV-------SWTGIIDGYTRMN-RSNGALALFRRM 74 (331)
Q Consensus 28 ~~~g~~~~A~~~~~~~~~----~~~~-------~~~~l~~~~~~~~-~~~~a~~~~~~~ 74 (331)
.+.|+++.|..++.+... .++. .+..........+ +++.|...+++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a 62 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRA 62 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 467888888888887652 1221 1222233334445 777776666665
No 232
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.18 E-value=0.095 Score=42.90 Aligned_cols=110 Identities=16% Similarity=0.125 Sum_probs=79.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHH
Q 048799 155 SWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDML 234 (331)
Q Consensus 155 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 234 (331)
+.+..+.-+...|+...|.++-++.. .|+..-|..-+.+++..+++++-.++-.. +-++.-|..++.+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHH
Confidence 44555666677888888888766552 37888888889999999998877765321 22457788889999
Q ss_pred HhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 048799 235 GRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283 (331)
Q Consensus 235 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 283 (331)
.+.|+..+|..+..++.. ..-+..|.+.|++.+|.+...+.
T Consensus 248 ~~~~~~~eA~~yI~k~~~--------~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIPD--------EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhCCh--------HHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999999988888432 34566777888888887665443
No 233
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.17 E-value=0.088 Score=42.39 Aligned_cols=164 Identities=12% Similarity=0.036 Sum_probs=92.9
Q ss_pred HhcCChhHHHHHHHHHHhcc-CCCCchH-----HHHHHHHHHhhcC-chhHHHHHHhhhhhc----C----CCcc----h
Q 048799 59 TRMNRSNGALALFRRMVACE-YTEPSEI-----TILAVFPAIWQNG-DVRNCQLIHGYGEKR----G----FNAF----H 119 (331)
Q Consensus 59 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~-----~~~~l~~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~----~ 119 (331)
.+.|+.+.|..++.++.... ...|+.. .+..........+ +++.|...+++..+. + ..+. -
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 57899999999999983333 2334432 2222333444556 777777766665443 1 1110 1
Q ss_pred hHHHHHHHHHHHhcCCHh---HHHHHHHHhhhcCCc-HHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHH
Q 048799 120 IHVSNCLIDTYAKCGCIF---SALKLFEDISVERKN-LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195 (331)
Q Consensus 120 ~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 195 (331)
..+...++.+|...+..+ +|.++++.+....|+ +..+..-+..+.+.++.+.+.+.+.+|...- .-....+..++
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 235556667777666544 455566666555454 4555566666666788888888888887652 22334444444
Q ss_pred HHHhc--cCChHHHHHHHHHHHHhcCCCCcH
Q 048799 196 NACSH--GGLVEEGLKFFDKMVEECEVLPDI 224 (331)
Q Consensus 196 ~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~ 224 (331)
..+.. ......|...++.+... .+.|..
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~-r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLN-RFKSSE 192 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHH-HhCCCh
Confidence 44321 22344566666665555 444444
No 234
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.17 E-value=0.0097 Score=46.26 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=40.3
Q ss_pred ccCChHHHHHHHHHHHHhcCCC-CcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc----cHHHHHHHHHHHhcCCchh
Q 048799 200 HGGLVEEGLKFFDKMVEECEVL-PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT----NVVVWRTLLGACSFHGNVE 274 (331)
Q Consensus 200 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~ 274 (331)
+.|++..|...|...++.+.-. -....+-.|.+++...|++++|..+|..+....| -+.....|..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 3444555555555544431100 0122333344455555555555555544444411 1344444444455555555
Q ss_pred HHHHHHHHHHHhhcCC
Q 048799 275 MGERVTRKILEMERGY 290 (331)
Q Consensus 275 ~a~~~~~~~~~~~~~~ 290 (331)
+|...|+++.+.-|+.
T Consensus 233 ~A~atl~qv~k~YP~t 248 (262)
T COG1729 233 EACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHHHHHHCCCC
Confidence 5555555555544443
No 235
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.14 E-value=0.013 Score=45.58 Aligned_cols=102 Identities=16% Similarity=0.135 Sum_probs=75.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhccC--CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCC-cHhhHHHHH
Q 048799 155 SWTSIISGFAMHGMGKEAVENFERMQKVVL--KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP-DIKHYGCLI 231 (331)
Q Consensus 155 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~ 231 (331)
.|+.-+..+ +.|++..|...|...++... .-....+-.|..++...|++++|..+|..+.+.++-.| -+...--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 577766655 56778999998888877541 11234455688888889999999999988888655444 346777788
Q ss_pred HHHHhcCCHHHHHHHHhhcccCCccH
Q 048799 232 DMLGRAGRLEQAEKVASGIPSEITNV 257 (331)
Q Consensus 232 ~~~~~~g~~~~A~~~~~~~~~~~p~~ 257 (331)
.+..+.|+.++|..+|++..+..|+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 88888899999999998888875653
No 236
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0097 Score=48.80 Aligned_cols=94 Identities=9% Similarity=-0.110 Sum_probs=45.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhccC----CCC---------chHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHH
Q 048799 56 DGYTRMNRSNGALALFRRMVACEY----TEP---------SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHV 122 (331)
Q Consensus 56 ~~~~~~~~~~~a~~~~~~~~~~~~----~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (331)
+.|.+.|++..|...|++++..-. .++ -..+++.+.-++.+.+++..|++..++.+..+.. +..+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~--N~KA 293 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN--NVKA 293 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC--chhH
Confidence 457778888888888777532111 111 0113334444444555555555555544444322 4444
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 048799 123 SNCLIDTYAKCGCIFSALKLFEDISVERK 151 (331)
Q Consensus 123 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 151 (331)
...-..++...|+++.|+..|+++.+..|
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 44444445555555555555555544444
No 237
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.07 E-value=0.13 Score=42.65 Aligned_cols=167 Identities=12% Similarity=0.002 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHhhcCchhHHHHHHhhhhhcCC--CcchhHHHHHHHHHHHh---cCCHhHHHHHHHHhhhc--CCcHHHH
Q 048799 84 EITILAVFPAIWQNGDVRNCQLIHGYGEKRGF--NAFHIHVSNCLIDTYAK---CGCIFSALKLFEDISVE--RKNLVSW 156 (331)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~--~~~~~~~ 156 (331)
..+...++-+|....+++...++.+.+..... .+....+-...+-++.+ .|+.++|+.++..+... .+++.+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 34555677778889999999999998877621 11133344455666777 89999999999885433 4677888
Q ss_pred HHHHHHHH----c-----cCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCC-hH---HHHHHH---HH-HHHhcC
Q 048799 157 TSIISGFA----M-----HGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGL-VE---EGLKFF---DK-MVEECE 219 (331)
Q Consensus 157 ~~l~~~~~----~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~---~a~~~~---~~-~~~~~~ 219 (331)
..+...|. . ....++|+..|.+.-+ +.|+..+=-.++..+...|. .+ +..++- .. ..++ |
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k-g 297 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK-G 297 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh-c
Confidence 88777653 2 2247788888887765 34654332222222222332 21 222222 11 2122 2
Q ss_pred C---CCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC
Q 048799 220 V---LPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253 (331)
Q Consensus 220 ~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 253 (331)
. ..+-..+..++.+..-.|+.++|.+..+.|...
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2 235566788899999999999999999999877
No 238
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.06 E-value=0.016 Score=40.14 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q 048799 16 NLVTWNVMITGLVKWGELEYARSLFEEM 43 (331)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 43 (331)
|..++..++.++++.|+++....+++..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~ 28 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV 28 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 4567788888888888888888887654
No 239
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.06 E-value=0.081 Score=39.82 Aligned_cols=181 Identities=10% Similarity=-0.031 Sum_probs=104.7
Q ss_pred CchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc-HHHHHHHHHHHHccCChHHHHHHH
Q 048799 98 GDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKEAVENF 176 (331)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 176 (331)
|-+.-|.-=|.+.....+. -+.+||-|.--+...|+++.|.+.|+...+.+|. ..+...-.-++.-.|++.-|.+-|
T Consensus 79 GL~~LAR~DftQaLai~P~--m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC--cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHH
Confidence 3444444445555554333 6788998998999999999999999998877663 333333333444578888888777
Q ss_pred HHHHhcc-CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHH-HHHHHHhcCCHHHHHHHHhhc-ccC
Q 048799 177 ERMQKVV-LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC-LIDMLGRAGRLEQAEKVASGI-PSE 253 (331)
Q Consensus 177 ~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~ 253 (331)
.+.-+.. ..|-...|..+.. ..-++.+|..-+.+-.+ +. |..-|.. +++.|...=..+.+.+-...- .+.
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~--~~--d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n 229 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE--KS--DKEQWGWNIVEFYLGKISEETLMERLKADATDN 229 (297)
T ss_pred HHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH--hc--cHhhhhHHHHHHHHhhccHHHHHHHHHhhccch
Confidence 6665543 2233333333332 33456666554433222 22 3333332 233333222222222222211 111
Q ss_pred ----CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh
Q 048799 254 ----ITNVVVWRTLLGACSFHGNVEMGERVTRKILEME 287 (331)
Q Consensus 254 ----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 287 (331)
..-..||-.+..-+...|+.++|..+|+-++..+
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2234678888999999999999999999988643
No 240
>PRK11906 transcriptional regulator; Provisional
Probab=97.01 E-value=0.083 Score=44.68 Aligned_cols=160 Identities=11% Similarity=0.067 Sum_probs=104.5
Q ss_pred hhH--HHHHHHHHhc-----CChhHHHHHHHHHHhccCCCCch-HHHHHHHHHHh---------hcCchhHHHHHHhhhh
Q 048799 49 VSW--TGIIDGYTRM-----NRSNGALALFRRMVACEYTEPSE-ITILAVFPAIW---------QNGDVRNCQLIHGYGE 111 (331)
Q Consensus 49 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 111 (331)
..| ...+++.... -..+.|+.+|.+.+......|+- ..|..+..++. ...+..+|.+..++++
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 556 5566655442 23567889999986444556653 34443333321 1234566777777788
Q ss_pred hcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc-HHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCH--
Q 048799 112 KRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR-- 188 (331)
Q Consensus 112 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-- 188 (331)
+.+.. |+.+...+..++.-.|+++.|...|+++....|+ ..+|........-.|+.++|.+.+++..+ ..|..
T Consensus 332 eld~~--Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~ 407 (458)
T PRK11906 332 DITTV--DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRK 407 (458)
T ss_pred hcCCC--CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhH
Confidence 77655 8888888888888888899999999999887775 45566666666678999999999988666 33543
Q ss_pred -HHHHHHHHHHhccCChHHHHHHHHH
Q 048799 189 -VTFLSVLNACSHGGLVEEGLKFFDK 213 (331)
Q Consensus 189 -~~~~~l~~~~~~~~~~~~a~~~~~~ 213 (331)
......+..|+.. ..+.|.+++-+
T Consensus 408 ~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 408 AVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 2333344456554 45666666644
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.12 Score=40.89 Aligned_cols=144 Identities=10% Similarity=0.095 Sum_probs=90.4
Q ss_pred HHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcH--HHHHHHHHHHHccC
Q 048799 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNL--VSWTSIISGFAMHG 167 (331)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~~ 167 (331)
-.......|++.+|...|......... +..+...++.+|...|+.+.|..++..+.....+. .....-|..+.+..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~--~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPE--NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcc--cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 344556788888999988888887555 55566678899999999999999998876543222 12223334444444
Q ss_pred ChHHHHHHHHHHHhccCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcC
Q 048799 168 MGKEAVENFERMQKVVLKP-NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238 (331)
Q Consensus 168 ~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 238 (331)
...+...+-.+.-. .| |...-..+...+...|+.+.|.+.+-.+.++..-.-|...-..|++.+.-.|
T Consensus 218 ~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 218 ATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred cCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 44444444444333 24 5556666777788888888888777666654122234555566666555544
No 242
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.91 E-value=0.0094 Score=40.62 Aligned_cols=91 Identities=12% Similarity=0.020 Sum_probs=56.7
Q ss_pred HHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-Cc-cH---HHHHHHHHHHhcCC
Q 048799 197 ACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-IT-NV---VVWRTLLGACSFHG 271 (331)
Q Consensus 197 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p-~~---~~~~~l~~~~~~~g 271 (331)
+....|+.+.|++.|.+.+.- .+.....||.-.+++.-.|+.++|++-++++.+. .+ .. ..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 455667777777777776642 3336667777777777777777777777776655 12 11 22333334456667
Q ss_pred chhHHHHHHHHHHHhhcC
Q 048799 272 NVEMGERVTRKILEMERG 289 (331)
Q Consensus 272 ~~~~a~~~~~~~~~~~~~ 289 (331)
+.+.|..-|+.+-++...
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 777777777777665443
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.88 E-value=0.23 Score=42.33 Aligned_cols=99 Identities=12% Similarity=0.157 Sum_probs=64.6
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccH--HHHHHHHHHHh
Q 048799 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNV--VVWRTLLGACS 268 (331)
Q Consensus 192 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~--~~~~~l~~~~~ 268 (331)
..+..++.+.|+.++|.+.+.++.+......+..+...|+.++...+.+.++..++.+..+. -|.. ..|+..+--+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 44666677889999999999988875222224557778888999999999999988887544 3433 34444332222
Q ss_pred cCCc---------------hhHHHHHHHHHHHhhcCC
Q 048799 269 FHGN---------------VEMGERVTRKILEMERGY 290 (331)
Q Consensus 269 ~~g~---------------~~~a~~~~~~~~~~~~~~ 290 (331)
..++ -..|.+.+.++.+.+|-.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 2222 123567788888776654
No 244
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.88 E-value=0.054 Score=38.01 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=33.5
Q ss_pred HHHccCChHHHHHHHHHHHhccC--CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 048799 162 GFAMHGMGKEAVENFERMQKVVL--KPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE 217 (331)
Q Consensus 162 ~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 217 (331)
...+.|++++|++.|+.+...-. +-....-..|+.+|.+.++++.|...+++.++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 33456777777777777655321 112334455666677777777777777776665
No 245
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.86 E-value=0.045 Score=39.49 Aligned_cols=137 Identities=11% Similarity=0.006 Sum_probs=75.7
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchH-HHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhH-HHH
Q 048799 47 NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEI-TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIH-VSN 124 (331)
Q Consensus 47 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ 124 (331)
....|..-+. +++.|..++|+.-|..+ +..|..--+. ............|+...|...|.++-.....| ... -..
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~l-ektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P-~~~rd~A 134 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDL-EKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP-QIGRDLA 134 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHH-HhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc-chhhHHH
Confidence 3344544444 45667777777777777 4443322111 22223334566777777777777776655444 221 111
Q ss_pred --HHHHHHHhcCCHhHHHHHHHHhhhcC-C-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCC
Q 048799 125 --CLIDTYAKCGCIFSALKLFEDISVER-K-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186 (331)
Q Consensus 125 --~l~~~~~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 186 (331)
.-.-.+...|-++....-.+.+.... | ....-..|.-+-.+.|++.+|.+.|..+......|
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 11234556777777777766664332 2 22334455556667788888888887776544333
No 246
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.85 E-value=0.077 Score=43.15 Aligned_cols=224 Identities=13% Similarity=0.015 Sum_probs=100.1
Q ss_pred HcCCHHHHHHHHhhCCCC------CchhHHHHHHHHHhcCChhHHHHHH----HHHHhccCCCCchHHHHHHHHHHhhcC
Q 048799 29 KWGELEYARSLFEEMPCR------NVVSWTGIIDGYTRMNRSNGALALF----RRMVACEYTEPSEITILAVFPAIWQNG 98 (331)
Q Consensus 29 ~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~ 98 (331)
...+.++|+..|.+.... ...++..+..+....|.+++++..- +-....+....--..|..+.+++.+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666554421 1234555666666666666654321 111110000011224444555555555
Q ss_pred chhHHHHHHhhhhhcCCC-c--chhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc-----CC--cHHHHHHHHHHHHccCC
Q 048799 99 DVRNCQLIHGYGEKRGFN-A--FHIHVSNCLIDTYAKCGCIFSALKLFEDISVE-----RK--NLVSWTSIISGFAMHGM 168 (331)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~-~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~~~l~~~~~~~~~ 168 (331)
++.+++.+-..-....-. + .-.....++..++.-.+.++++++.|+.+.+. +| ....|-.+.+.|.+..|
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 555555555544432111 0 01123334555555566666666666655433 11 12345566666666666
Q ss_pred hHHHHHHHHHHHhc----cCCCCHHHHH-----HHHHHHhccCChHHHHHHHHHHHHhc---CCCC-cHhhHHHHHHHHH
Q 048799 169 GKEAVENFERMQKV----VLKPNRVTFL-----SVLNACSHGGLVEEGLKFFDKMVEEC---EVLP-DIKHYGCLIDMLG 235 (331)
Q Consensus 169 ~~~a~~~~~~m~~~----~~~p~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~ 235 (331)
+++|.-+..+..+. ++.--..-|. .+.-++...|...+|.+.-++..+.. |-.+ .......+.+.|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 66666555544321 1111111111 22234445555555555555443320 2111 1222334445555
Q ss_pred hcCCHHHHHHHHhhccc
Q 048799 236 RAGRLEQAEKVASGIPS 252 (331)
Q Consensus 236 ~~g~~~~A~~~~~~~~~ 252 (331)
..|+.+.|..-|+.+..
T Consensus 258 ~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQAMG 274 (518)
T ss_pred hcccHhHHHHHHHHHHH
Confidence 55555555555554443
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.17 Score=40.13 Aligned_cols=124 Identities=11% Similarity=0.017 Sum_probs=64.6
Q ss_pred HHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChH
Q 048799 127 IDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVE 205 (331)
Q Consensus 127 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 205 (331)
.......|++.+|...|.......| +...-..++.+|...|+.+.|..++..+-..--.........-+..+.+.....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3445566777777777776665533 345555666677777777777777766533211111122222233334444444
Q ss_pred HHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC
Q 048799 206 EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253 (331)
Q Consensus 206 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 253 (331)
+...+-.+.-.. +-|...-..+...+...|+.++|.+.+-.+...
T Consensus 221 ~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444444322 225555555666666666666666555544433
No 248
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.33 Score=43.48 Aligned_cols=108 Identities=15% Similarity=0.173 Sum_probs=69.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhc
Q 048799 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269 (331)
Q Consensus 190 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~ 269 (331)
+.+--+.-+...|+..+|.++-.+.. -||-..|-.-+.++...+++++-+++-+... .+.-|.-++.+|.+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk----sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK----SPIGYLPFVEACLK 756 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC----CCCCchhHHHHHHh
Confidence 33444444556677777776655442 3577777777777777777777766665544 24556667777788
Q ss_pred CCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHH
Q 048799 270 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLR 314 (331)
Q Consensus 270 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 314 (331)
.|+.++|.+++.+.. + +.....+|.+.|++.+|.++-
T Consensus 757 ~~n~~EA~KYiprv~----~----l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVG----G----LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cccHHHHhhhhhccC----C----hHHHHHHHHHhccHHHHHHHH
Confidence 888887777766542 1 125666777777777776543
No 249
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.14 Score=39.26 Aligned_cols=194 Identities=14% Similarity=-0.002 Sum_probs=87.6
Q ss_pred HHHHHHHHHhhcCchhHHHHHHhhhhhcCCC---cc-hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc-----CCcHHHH
Q 048799 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFN---AF-HIHVSNCLIDTYAKCGCIFSALKLFEDISVE-----RKNLVSW 156 (331)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ 156 (331)
.|.....+|...+++++|...+.++.+.--. +. -...|...+-..-+...+.++..+++++... .|++.+.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAm 112 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAM 112 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHH
Confidence 3444455666667777777666665532111 00 1112222223333334445555555444322 2222111
Q ss_pred HHHHH--HHHccCChHHHHHHHHHHHhc---c--CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh---c-CCCCcHh
Q 048799 157 TSIIS--GFAMHGMGKEAVENFERMQKV---V--LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE---C-EVLPDIK 225 (331)
Q Consensus 157 ~~l~~--~~~~~~~~~~a~~~~~~m~~~---~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~-~~~~~~~ 225 (331)
++-. -.....++++|+++|++...- + ..--...+......+.+...+.+|-..+.+-... . ....-..
T Consensus 113 -aleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k 191 (308)
T KOG1585|consen 113 -ALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCK 191 (308)
T ss_pred -HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHH
Confidence 1111 123445566666666554321 0 0001122334444555556666655444432211 0 1111112
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcccC-----CccHHHHHHHHHHHhcCCchhHHHHHHH
Q 048799 226 HYGCLIDMLGRAGRLEQAEKVASGIPSE-----ITNVVVWRTLLGACSFHGNVEMGERVTR 281 (331)
Q Consensus 226 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 281 (331)
.|...|-.+.-..++..|.+.++.-.+. ..+..+...|+.+| ..|+.+.+.+++.
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 3444454555666777777777774433 22456666777666 4466666555543
No 250
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.83 E-value=0.11 Score=44.69 Aligned_cols=161 Identities=12% Similarity=0.034 Sum_probs=89.9
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCH
Q 048799 57 GYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136 (331)
Q Consensus 57 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 136 (331)
...-.|+++++.+..+.-..-..+ | ......++.-+.+.|..+.|+++.. |+. .-.+...+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~----------D~~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVT----------DPD---HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-----------HH---HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcC----------ChH---HHhHHHHhcCCH
Confidence 345567777776666522111112 2 3346667777777777777777643 332 234556677888
Q ss_pred hHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 048799 137 FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVE 216 (331)
Q Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 216 (331)
+.|.++.++. .+...|..|.....+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+....
T Consensus 335 ~~A~~~a~~~----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 335 DIALEIAKEL----DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHCCCC----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhc----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 8777765433 3566788888888888888888888776543 45555566667777776666666654
Q ss_pred hcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhccc
Q 048799 217 ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252 (331)
Q Consensus 217 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 252 (331)
. | -++....++.-.|++++..+++.+...
T Consensus 402 ~-~------~~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 402 R-G------DINIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp T-T-------HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred c-c------CHHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 4 2 133444455556777777777666543
No 251
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.80 E-value=0.041 Score=44.64 Aligned_cols=228 Identities=13% Similarity=0.005 Sum_probs=116.9
Q ss_pred HHhcCChhHHHHHHHHHHhccC-CCCchHHHHHHHHHHhhcCchhHHHHHH----hhhhhcCCCcchhHHHHHHHHHHHh
Q 048799 58 YTRMNRSNGALALFRRMVACEY-TEPSEITILAVFPAIWQNGDVRNCQLIH----GYGEKRGFNAFHIHVSNCLIDTYAK 132 (331)
Q Consensus 58 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (331)
+...++.++|+..+.+.+.... ....-.++..+..+.++.|.+++++..- +.+.+......-...|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888877776533211 1112235555666777777776665432 2222211110012344444555555
Q ss_pred cCCHhHHHHHHHHhhhc---CC---cHHHHHHHHHHHHccCChHHHHHHHHHHHhcc---CCC--CHHHHHHHHHHHhcc
Q 048799 133 CGCIFSALKLFEDISVE---RK---NLVSWTSIISGFAMHGMGKEAVENFERMQKVV---LKP--NRVTFLSVLNACSHG 201 (331)
Q Consensus 133 ~g~~~~A~~~~~~~~~~---~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p--~~~~~~~l~~~~~~~ 201 (331)
.-++.+++.+-..-... .+ .-.....+..++.-.+.++++++.|+...+-- -.| ....+..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55555555554433322 11 11223345556666667777777777665421 111 124566677777777
Q ss_pred CChHHHHHHHHHHHHh---cCCCCcHhhH-----HHHHHHHHhcCCHHHHHHHHhhcccC---CccH----HHHHHHHHH
Q 048799 202 GLVEEGLKFFDKMVEE---CEVLPDIKHY-----GCLIDMLGRAGRLEQAEKVASGIPSE---ITNV----VVWRTLLGA 266 (331)
Q Consensus 202 ~~~~~a~~~~~~~~~~---~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~----~~~~~l~~~ 266 (331)
.++++|.-+..++.+. +++..=..-| ..+.-++...|.+.+|.+..++..+. .-|. .....+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 7777777666655432 1222111112 22334455666666666666665443 2222 333445566
Q ss_pred HhcCCchhHHHHHHHHHHH
Q 048799 267 CSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 267 ~~~~g~~~~a~~~~~~~~~ 285 (331)
|...|+.+.|..-|+.+..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 7777777777777776664
No 252
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.79 E-value=0.11 Score=37.51 Aligned_cols=123 Identities=11% Similarity=0.067 Sum_probs=62.6
Q ss_pred hhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHH-----HHHHHccCCh
Q 048799 95 WQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI-----ISGFAMHGMG 169 (331)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~ 169 (331)
.+.+..++|+.-|..+.+.|......-..-.........|+...|...|.++-...+.+....-+ .-.+...|-+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34555666666666666655443222222233344555666666666666665443222222111 1123455666
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 048799 170 KEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE 217 (331)
Q Consensus 170 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 217 (331)
++.....+-+-..+.+--...-..|.-+-.+.|++.+|...|..+...
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 666665555544443333334445555555666666666666666554
No 253
>PRK11906 transcriptional regulator; Provisional
Probab=96.76 E-value=0.023 Score=47.87 Aligned_cols=120 Identities=13% Similarity=0.064 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHhc-cCCCC-HHHHHHHHHHHhcc---------CChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhc
Q 048799 169 GKEAVENFERMQKV-VLKPN-RVTFLSVLNACSHG---------GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237 (331)
Q Consensus 169 ~~~a~~~~~~m~~~-~~~p~-~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (331)
.+.|..+|.+.... ...|+ ...|..+..++... .+..+|.++-++..+. -+-|......+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhh
Confidence 44566666666521 13343 23444443333211 1233444455555442 122555555555555555
Q ss_pred CCHHHHHHHHhhcccCCcc-HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCC
Q 048799 238 GRLEQAEKVASGIPSEITN-VVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 290 (331)
Q Consensus 238 g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 290 (331)
|+++.|..+|+++....|+ ..+|......+.-.|+.++|.+.++++.+++|..
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 6666666666666665443 3444444445555666666666666666666653
No 254
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.67 E-value=0.32 Score=40.97 Aligned_cols=63 Identities=14% Similarity=0.013 Sum_probs=52.0
Q ss_pred cHHHHHHHHHH--HhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhh
Q 048799 256 NVVVWRTLLGA--CSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319 (331)
Q Consensus 256 ~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (331)
+...-|.|..+ +...|++.++.-.-..+.+..| ++.+|..++..+....++++|+.++..+..
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 34555666655 5678999999998888888999 669999999999999999999999987643
No 255
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.65 E-value=0.17 Score=38.22 Aligned_cols=182 Identities=13% Similarity=0.057 Sum_probs=108.7
Q ss_pred hcCCHhHHHHHHHHhhhcCCc-HHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCH-HHHHHHHHHHhccCChHHHHH
Q 048799 132 KCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR-VTFLSVLNACSHGGLVEEGLK 209 (331)
Q Consensus 132 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~ 209 (331)
..|-++-|.--|.+.....|+ +..||.+.--+...|+++.|.+.|+...+.. |+- .+...-.-++.-.|+++-|.+
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhhHH
Confidence 334455555556666555664 6789999989999999999999999988743 432 222222223446789999988
Q ss_pred HHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHH-HHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc
Q 048799 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK-VASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288 (331)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 288 (331)
-+...-+...-.|-...|.-+. -+.-++.+|.. +.++.... +..-|...|-.|.- |+.. ...+++.+.+...
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~--d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~ 227 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS--DKEQWGWNIVEFYL-GKIS-EETLMERLKADAT 227 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc--cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhcc
Confidence 7777665412222222332222 23445666654 44555554 44444444333321 2221 1334444444222
Q ss_pred CC-------CccHHHHHHHHhhhccCcchHHHHHHHhhccc
Q 048799 289 GY-------GGDYVLMYNILAGVWRYGDAERLRRVVDERNA 322 (331)
Q Consensus 289 ~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (331)
++ .++|..++.-+...|..++|..+|+.....++
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 22 36788899999999999999999987766543
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.022 Score=45.59 Aligned_cols=160 Identities=14% Similarity=0.033 Sum_probs=112.1
Q ss_pred ccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhH----HHHHHHHHhcCCH
Q 048799 165 MHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY----GCLIDMLGRAGRL 240 (331)
Q Consensus 165 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~ 240 (331)
-.|++-+|-..++++.+. .+.|...+..-=.+|...|+...-...++++... -.++...| ..+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 467777777778888764 5556677777777888899988888888887753 23444333 3444556788999
Q ss_pred HHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcC----CCccHHHHHHHHhhhccCcchHHHHH
Q 048799 241 EQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERG----YGGDYVLMYNILAGVWRYGDAERLRR 315 (331)
Q Consensus 241 ~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 315 (331)
++|++.-++..+. +.|......+...+-..|+..++.+...+-...-.. -...|-..+..+...+.++.|+.+|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999988877 446666777777788889999988887765541111 12445556667777799999999997
Q ss_pred HHhhccccCCCC
Q 048799 316 VVDERNALKFPG 327 (331)
Q Consensus 316 ~~~~~~~~~~~~ 327 (331)
.-.-..+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 765555544443
No 257
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.62 E-value=0.007 Score=30.70 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCC
Q 048799 258 VVWRTLLGACSFHGNVEMGERVTRKILEMERGY 290 (331)
Q Consensus 258 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 290 (331)
..|..+..++...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456778888888899999999999998888864
No 258
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.34 Score=43.98 Aligned_cols=174 Identities=14% Similarity=0.100 Sum_probs=111.4
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCCCchhHHH----HHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhc
Q 048799 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTG----IIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQN 97 (331)
Q Consensus 22 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (331)
.-++.+.+..-++-|+.+-+.-.. +..+... ..+-+.+.|++++|...|-+.. +-+.|.. ++.-|...
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI--~~le~s~-----Vi~kfLda 410 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI--GFLEPSE-----VIKKFLDA 410 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc--ccCChHH-----HHHHhcCH
Confidence 356666777777888877766543 2333333 3344567899999999887752 2233432 45556667
Q ss_pred CchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHH
Q 048799 98 GDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFE 177 (331)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 177 (331)
....+-..+++.+.+.|.. +...-..|+.+|.+.++.++-.++.+... .+.-..-....+..+.+.+-.++|.-+-.
T Consensus 411 q~IknLt~YLe~L~~~gla--~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA--NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHcccc--cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 7777778888899999887 55566789999999999998888777553 11111123445566666676777666554
Q ss_pred HHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 048799 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKM 214 (331)
Q Consensus 178 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 214 (331)
+... +......++ -..+++++|.+++..+
T Consensus 488 k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 488 KFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred Hhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 4321 333334343 4567888888887655
No 259
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.59 E-value=0.31 Score=43.01 Aligned_cols=245 Identities=12% Similarity=0.073 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhCC-----------CCCchhHHHHHHHHHhcCCh--hHHHHHHHHHHhccCCCCc
Q 048799 17 LVTWNVMITGLVKWGELEYARSLFEEMP-----------CRNVVSWTGIIDGYTRMNRS--NGALALFRRMVACEYTEPS 83 (331)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~ 83 (331)
...+.+-+.-|...|.+++|.++----. .-++..++..=.+|.+.++. -+.+.-++++ ++.|..|+
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~-k~rge~P~ 634 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEER-KKRGETPN 634 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHH-HhcCCCch
Confidence 3345555666777888877765422111 01222334444455554443 3344445666 55666677
Q ss_pred hHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc------------CC
Q 048799 84 EITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE------------RK 151 (331)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------~~ 151 (331)
... +...++-.|.+.+|-++|.+.-.. +..++.|.....+|.|.++....... ..
T Consensus 635 ~iL---lA~~~Ay~gKF~EAAklFk~~G~e----------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr 701 (1081)
T KOG1538|consen 635 DLL---LADVFAYQGKFHEAAKLFKRSGHE----------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWAR 701 (1081)
T ss_pred HHH---HHHHHHhhhhHHHHHHHHHHcCch----------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhh
Confidence 643 455667778888888888654322 22334444445555555544322110 00
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHH------HHhccCC---CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCC
Q 048799 152 NLVSWTSIISGFAMHGMGKEAVENFER------MQKVVLK---PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP 222 (331)
Q Consensus 152 ~~~~~~~l~~~~~~~~~~~~a~~~~~~------m~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 222 (331)
+..-=.+....+...|+.++|+.+.-+ +.+-+.+ .+..+...+...+-+...+.-|-++|..|-..
T Consensus 702 ~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----- 776 (1081)
T KOG1538|consen 702 NIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----- 776 (1081)
T ss_pred hcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-----
Confidence 110011233455667777777765422 1221211 23344554555555666677788888877432
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccH-----------HHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNV-----------VVWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
..+++.....+++.+|..+-++..+..|+. .-+..--.+|.+.|+-.+|.++++++..
T Consensus 777 -----ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 777 -----KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred -----HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 246777888999999999988877763432 1122233578888888889888888765
No 260
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.58 E-value=0.0052 Score=31.26 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhhcC
Q 048799 258 VVWRTLLGACSFHGNVEMGERVTRKILEMERG 289 (331)
Q Consensus 258 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 289 (331)
.+|..++.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46778888888889999999999999888876
No 261
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.52 E-value=0.011 Score=32.25 Aligned_cols=29 Identities=17% Similarity=0.063 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 048799 123 SNCLIDTYAKCGCIFSALKLFEDISVERK 151 (331)
Q Consensus 123 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 151 (331)
+..+...|...|++++|.++|+++.+..|
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 34445555555555555555555554444
No 262
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.52 E-value=0.28 Score=42.26 Aligned_cols=158 Identities=13% Similarity=0.019 Sum_probs=103.8
Q ss_pred HHHHHHcCCHHHHHHHHh--hCC-CCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCch
Q 048799 24 ITGLVKWGELEYARSLFE--EMP-CRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDV 100 (331)
Q Consensus 24 ~~~~~~~g~~~~A~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 100 (331)
.....-.|+++++.++.+ ++. .-+....+.++.-+-+.|..+.|+++-++- . .-.....+.|++
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~----------~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDP----------D---HRFELALQLGNL 334 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-H----------H---HHHHHHHHCT-H
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCCh----------H---HHhHHHHhcCCH
Confidence 345566889999666655 222 112445788888888999999998765442 1 233445678999
Q ss_pred hHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 048799 101 RNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180 (331)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 180 (331)
+.|.++.++.. +...|..|.+...+.|+++-|++.|++.. -|..|+-.|.-.|+.+.-.++.+...
T Consensus 335 ~~A~~~a~~~~-------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-------d~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 335 DIALEIAKELD-------DPEKWKQLGDEALRQGNIELAEECYQKAK-------DFSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHHCCCCS-------THHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-------cHHHHHHHHHHHHHcCCHHHHHHHHHhhc-------CccccHHHHHHhCCHHHHHHHHHHHH
Confidence 99988876543 66789999999999999999999999873 35666667778898888888877766
Q ss_pred hccCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 048799 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKM 214 (331)
Q Consensus 181 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 214 (331)
..|. ++....++...|+.++..+++.+.
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 6552 445555566678888888777654
No 263
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.46 E-value=0.16 Score=34.97 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=22.6
Q ss_pred HHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 232 DMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 232 ~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
..+...|+-+.-.+++..+... .+++.....+..+|.+.|+..++.++++++-+
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3344444444444444444322 34444444445555555555555555544443
No 264
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.43 E-value=0.047 Score=37.36 Aligned_cols=53 Identities=13% Similarity=-0.007 Sum_probs=25.6
Q ss_pred HhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 048799 94 IWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148 (331)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 148 (331)
+...|+++.|++.|.+.+..-+. ..++||.-..++.-.|+.++|+.-+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~--raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPE--RASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhccc--chHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555554444322 444555555555555555555554444443
No 265
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=96.36 E-value=0.56 Score=40.25 Aligned_cols=180 Identities=10% Similarity=-0.012 Sum_probs=112.1
Q ss_pred CCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHH
Q 048799 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 160 (331)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 160 (331)
+.|.....+++..+.....+.-...+..++...|. +...+..++.+|... .-+.-..+++++.+..-+......-+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e---~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE---SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHH
Confidence 45556677778888888888888888888887765 456667788888877 55666777777766554444444333
Q ss_pred HHHHccCChHHHHHHHHHHHhccCCCC------HHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHH
Q 048799 161 SGFAMHGMGKEAVENFERMQKVVLKPN------RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDML 234 (331)
Q Consensus 161 ~~~~~~~~~~~a~~~~~~m~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 234 (331)
..+...++.+.+..+|.++... +.|- ...|..|.... ..+.+....+...+.+..|...-...+.-+-.-|
T Consensus 139 a~~yEkik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEKIKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHHhchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 3334447777777777776543 2221 12344444321 3456666666666666545544555556666677
Q ss_pred HhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHH
Q 048799 235 GRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGAC 267 (331)
Q Consensus 235 ~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~ 267 (331)
....++.+|.+++..+.+. ..|...-..++.-+
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 7788888888888877666 44444444444433
No 266
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.32 E-value=0.36 Score=37.54 Aligned_cols=56 Identities=16% Similarity=0.046 Sum_probs=33.8
Q ss_pred hhcCchhHHHHHHhhhhhcCC-CcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC
Q 048799 95 WQNGDVRNCQLIHGYGEKRGF-NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER 150 (331)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 150 (331)
.+.|++++|...|+.+....+ .|....+...++-++.+.++++.|+...++.....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 355666666666666655432 22244455556666777777777777777766553
No 267
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.24 E-value=0.25 Score=35.00 Aligned_cols=42 Identities=17% Similarity=0.041 Sum_probs=21.0
Q ss_pred HHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhc
Q 048799 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133 (331)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (331)
++..+...+.......+++.+...+. . +...++.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~-~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-E-NPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-c-chhHHHHHHHHHHHH
Confidence 34444444455555555555555442 2 455555555555544
No 268
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.19 E-value=0.015 Score=42.98 Aligned_cols=103 Identities=16% Similarity=0.014 Sum_probs=74.6
Q ss_pred HHHhccCChHHHHHHHHHHHHhcCCCCc-----HhhHHHHHHHHHhcCCHHHHHHHHhhcccCCcc-HHHHHHHHHHHhc
Q 048799 196 NACSHGGLVEEGLKFFDKMVEECEVLPD-----IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN-VVVWRTLLGACSF 269 (331)
Q Consensus 196 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~ 269 (331)
.-+...|++++|..-|..+++. +++. ...|..-.-++.+.+.++.|..-..++++..|+ ......-..+|-+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 3467899999999999999875 3332 234444556778889999999988888877342 2333344567888
Q ss_pred CCchhHHHHHHHHHHHhhcCCCccHHHHHHH
Q 048799 270 HGNVEMGERVTRKILEMERGYGGDYVLMYNI 300 (331)
Q Consensus 270 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 300 (331)
...++.|+.-|+++.+.+|....+....+++
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 8999999999999999988875554444443
No 269
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.15 E-value=0.08 Score=41.52 Aligned_cols=89 Identities=16% Similarity=0.225 Sum_probs=54.4
Q ss_pred CCcHHHHHHHHHHHHc-----cCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccC----------------ChHHHH
Q 048799 150 RKNLVSWTSIISGFAM-----HGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG----------------LVEEGL 208 (331)
Q Consensus 150 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----------------~~~~a~ 208 (331)
..+-.+|...+..+.. .+..+-....++.|.+.|+.-|..+|+.|++.+-+.. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3444555555554432 2344555555666667777777777777766554321 123456
Q ss_pred HHHHHHHHhcCCCCcHhhHHHHHHHHHhcCC
Q 048799 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239 (331)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 239 (331)
+++++|... |+.||-.+-..++.++.+.|-
T Consensus 144 ~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWH-GVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHc-CCCCchHHHHHHHHHhccccc
Confidence 777777666 777877777777777776654
No 270
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.05 E-value=1.1 Score=40.44 Aligned_cols=285 Identities=12% Similarity=0.048 Sum_probs=164.0
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCCC---chhHHHHHHHHHhcCCh--hHHHHHHHHHHhccCCCCchHHHHHHHHHHhh
Q 048799 22 VMITGLVKWGELEYARSLFEEMPCRN---VVSWTGIIDGYTRMNRS--NGALALFRRMVACEYTEPSEITILAVFPAIWQ 96 (331)
Q Consensus 22 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (331)
.+++-+...+.+..|+++-+.+..|. ...|.....-+.+..+. +++++.+.+=.... . .....|..+.+....
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHHh
Confidence 45666778889999999988887665 45666666666665322 23333333221211 2 334567777777778
Q ss_pred cCchhHHHHHHhhhhhcCCCcc---hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc------------CC-cHHHHHHHH
Q 048799 97 NGDVRNCQLIHGYGEKRGFNAF---HIHVSNCLIDTYAKCGCIFSALKLFEDISVE------------RK-NLVSWTSII 160 (331)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------~~-~~~~~~~l~ 160 (331)
.|+.+.|..+++.=...+...+ +..-+..-+.-..+.|+.+-...++..+... .| ....|.-++
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~ 599 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFM 599 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 8999888887764322221100 1112233344455666666655555544332 12 122233222
Q ss_pred H--------HHHccCChHHHHHHHH--HHH----hccCCCCHHHHHHHHHHHhccCC----------hHHHHHHHHHHHH
Q 048799 161 S--------GFAMHGMGKEAVENFE--RMQ----KVVLKPNRVTFLSVLNACSHGGL----------VEEGLKFFDKMVE 216 (331)
Q Consensus 161 ~--------~~~~~~~~~~a~~~~~--~m~----~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~ 216 (331)
. .+.+.++-.+++..|. ... ..|..|+.. ....++.+... ..+-..+.+.+..
T Consensus 600 r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~ 676 (829)
T KOG2280|consen 600 RHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALK---TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLED 676 (829)
T ss_pred HhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHH---HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 2 1112222222222221 100 012233332 23333433322 1122334444444
Q ss_pred hcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHH
Q 048799 217 ECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 296 (331)
Q Consensus 217 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 296 (331)
+++..-..-+.+--+.-+...|+..+|.++-.+..- |+...|..-+.+++..+++++-+++.+... .|.-|.-
T Consensus 677 q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki--pdKr~~wLk~~aLa~~~kweeLekfAkskk-----sPIGy~P 749 (829)
T KOG2280|consen 677 QFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI--PDKRLWWLKLTALADIKKWEELEKFAKSKK-----SPIGYLP 749 (829)
T ss_pred HhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC--cchhhHHHHHHHHHhhhhHHHHHHHHhccC-----CCCCchh
Confidence 445444444556666778889999999999888775 799999999999999999988777665432 2577889
Q ss_pred HHHHHhhhccCcchHHHHHHHh
Q 048799 297 MYNILAGVWRYGDAERLRRVVD 318 (331)
Q Consensus 297 l~~~~~~~g~~~~a~~~~~~~~ 318 (331)
+..+|.+.|+.++|.+++-++.
T Consensus 750 FVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 750 FVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HHHHHHhcccHHHHhhhhhccC
Confidence 9999999999999999887653
No 271
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.00 E-value=0.56 Score=36.78 Aligned_cols=51 Identities=10% Similarity=0.044 Sum_probs=26.5
Q ss_pred cCChhHHHHHHHHHHhccCCCCc--hHHHHHHHHHHhhcCchhHHHHHHhhhh
Q 048799 61 MNRSNGALALFRRMVACEYTEPS--EITILAVFPAIWQNGDVRNCQLIHGYGE 111 (331)
Q Consensus 61 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 111 (331)
..++++|++-|++.+.-.|-+-+ -.+...++....+.+++++....|.+++
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 34566666666666443332222 1233445555566666666665555543
No 272
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.97 E-value=0.57 Score=36.71 Aligned_cols=262 Identities=15% Similarity=0.112 Sum_probs=156.2
Q ss_pred CchHHHHHHHHHH-HHHcCCHHHHHHHHhhCCC--C-----CchhHHHHHHHHHhcCChhHHHHHHHHHHhc--cCC--C
Q 048799 14 ERNLVTWNVMITG-LVKWGELEYARSLFEEMPC--R-----NVVSWTGIIDGYTRMNRSNGALALFRRMVAC--EYT--E 81 (331)
Q Consensus 14 ~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~--~ 81 (331)
+||+..=|..-.. -.+..++++|+.-|.+..+ + ...+...++....+.|++++....|.+++.- ..+ .
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 6766554433222 1345688999999988652 2 2235567888899999999999988887321 111 2
Q ss_pred CchHHHHHHHHHHhhcCchhHHHHHHhhhhhc----CCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc-----C--
Q 048799 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKR----GFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE-----R-- 150 (331)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-- 150 (331)
-+..+.+.++...+.+.+.+....+|+.-++. ......-.+-+.|...|...|.+.+..++++++... +
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 23456777777777777777777766654332 111001123356888899999999999999888654 0
Q ss_pred ---C---cHHHHHHHHHHHHccCChHHHHHHHHHHHhc-cCCCCHHHHHHHHHHH-----hccCChHHHHHHHHHHHHhc
Q 048799 151 ---K---NLVSWTSIISGFAMHGMGKEAVENFERMQKV-VLKPNRVTFLSVLNAC-----SHGGLVEEGLKFFDKMVEEC 218 (331)
Q Consensus 151 ---~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~ 218 (331)
. -...|..=|..|...++-.+...+|++...- .-.|.+.... +|+-| .+.|.+++|..-|-++.+.+
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 0 1245777788888888888888888876543 2345555444 33333 35688888865554444432
Q ss_pred ---CCCC--cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC----CccHHHHHHHHHHHhcCCchhHHHHHHHH
Q 048799 219 ---EVLP--DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE----ITNVVVWRTLLGACSFHGNVEMGERVTRK 282 (331)
Q Consensus 219 ---~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 282 (331)
|-+. ..--|..|..++.+.|-- =|+.-... .|.......++.+|.. ++..+-+++++.
T Consensus 262 DEsGspRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 262 DESGSPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred cccCCcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 2221 122345555566555421 11111111 4566777888888854 455544444443
No 273
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.93 E-value=0.026 Score=28.54 Aligned_cols=32 Identities=19% Similarity=0.120 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhhcC
Q 048799 258 VVWRTLLGACSFHGNVEMGERVTRKILEMERG 289 (331)
Q Consensus 258 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 289 (331)
.+|..+...|...|++++|.+.|+++.+++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35677788888888889999888888888874
No 274
>PRK09687 putative lyase; Provisional
Probab=95.92 E-value=0.7 Score=37.24 Aligned_cols=239 Identities=12% Similarity=-0.080 Sum_probs=125.5
Q ss_pred HhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCch----hHHHHHHhhhhhcCC
Q 048799 40 FEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDV----RNCQLIHGYGEKRGF 115 (331)
Q Consensus 40 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~ 115 (331)
++.+..+|.......+.++...|.. ++...+..+.. .+|...-...+.++...|+. +++...+..+....
T Consensus 29 ~~~L~d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D- 102 (280)
T PRK09687 29 FRLLDDHNSLKRISSIRVLQLRGGQ-DVFRLAIELCS----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALED- 102 (280)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC-
Confidence 3333456666666666666666643 33333444422 24445555556666666653 34555555553332
Q ss_pred CcchhHHHHHHHHHHHhcCCH-----hHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHH
Q 048799 116 NAFHIHVSNCLIDTYAKCGCI-----FSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVT 190 (331)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 190 (331)
+ +..+....+.++...+.- ..+...+..... .++..+-...+.++.+.++ +.++..+-.+.+. ++...
T Consensus 103 -~-d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~-D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~V 175 (280)
T PRK09687 103 -K-SACVRASAINATGHRCKKNPLYSPKIVEQSQITAF-DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDV 175 (280)
T ss_pred -C-CHHHHHHHHHHHhcccccccccchHHHHHHHHHhh-CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHH
Confidence 2 444444455555544321 223333333321 3344455556666666665 4566666555542 44444
Q ss_pred HHHHHHHHhccC-ChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhc
Q 048799 191 FLSVLNACSHGG-LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269 (331)
Q Consensus 191 ~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~ 269 (331)
-...+.++.+.+ ..+.+...+..+.. .++..+...-+.++.+.|+. .|...+-...+. ++ .....+.++..
T Consensus 176 R~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~-~~--~~~~a~~ALg~ 247 (280)
T PRK09687 176 RNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK-GT--VGDLIIEAAGE 247 (280)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC-Cc--hHHHHHHHHHh
Confidence 445555555543 23455666655554 34666677777777777774 444444444443 23 23456677777
Q ss_pred CCchhHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 048799 270 HGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301 (331)
Q Consensus 270 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (331)
.|.. +|...+..+.+..|+. ........++
T Consensus 248 ig~~-~a~p~L~~l~~~~~d~-~v~~~a~~a~ 277 (280)
T PRK09687 248 LGDK-TLLPVLDTLLYKFDDN-EIITKAIDKL 277 (280)
T ss_pred cCCH-hHHHHHHHHHhhCCCh-hHHHHHHHHH
Confidence 7774 5777777777655533 4444444443
No 275
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.91 E-value=0.46 Score=35.25 Aligned_cols=96 Identities=18% Similarity=0.128 Sum_probs=41.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhccCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcH------hhH
Q 048799 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNR--VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDI------KHY 227 (331)
Q Consensus 156 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~ 227 (331)
+..+...|++.|+.+.|++.|.++.+....|.. ..+..++......+++..+...+.++........|. ..|
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 444445555555555555555554443222221 223344444444555555555544443321110111 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcccC
Q 048799 228 GCLIDMLGRAGRLEQAEKVASGIPSE 253 (331)
Q Consensus 228 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 253 (331)
..+. +...+++.+|-+.|-.....
T Consensus 119 ~gL~--~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 119 EGLA--NLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHH--HHHhchHHHHHHHHHccCcC
Confidence 2221 33456676666666655443
No 276
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.90 E-value=0.15 Score=40.46 Aligned_cols=59 Identities=10% Similarity=0.287 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 048799 122 VSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQ 180 (331)
Q Consensus 122 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 180 (331)
++..++..+...|+++.+.+.+++.....| +...|..++.+|.+.|+...|+..|+++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344455555555556666555555554444 45555566666666666666665555544
No 277
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.75 Score=37.32 Aligned_cols=153 Identities=8% Similarity=-0.022 Sum_probs=95.3
Q ss_pred HHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhc-cCCCCHHHH--HHHHHHHhccCChH
Q 048799 130 YAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKV-VLKPNRVTF--LSVLNACSHGGLVE 205 (331)
Q Consensus 130 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~--~~l~~~~~~~~~~~ 205 (331)
....|+..+|-..++++.+..| |..+++..=.++...|+.+.-...+++.... +......+| ..+.-++...|-++
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3445777777777777776644 5666776667777788877777777776653 211111222 23333445677888
Q ss_pred HHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-C-c---cHHHHHHHHHHHhcCCchhHHHHHH
Q 048799 206 EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-I-T---NVVVWRTLLGACSFHGNVEMGERVT 280 (331)
Q Consensus 206 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-p---~~~~~~~l~~~~~~~g~~~~a~~~~ 280 (331)
+|++.-++..+. + +-|...-.+....+--.|++.++.+++.+-... . . -...|....-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqi-N-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQI-N-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccC-C-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 888877777643 1 225556666666677778888888887776655 1 1 1223444445556667888888888
Q ss_pred HHHH
Q 048799 281 RKIL 284 (331)
Q Consensus 281 ~~~~ 284 (331)
+.-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7544
No 278
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.87 E-value=1.5 Score=41.70 Aligned_cols=140 Identities=21% Similarity=0.117 Sum_probs=73.1
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChH
Q 048799 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVE 205 (331)
Q Consensus 126 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 205 (331)
.++.--+.|.+++|+.++..-. ...-..|.+....+.....+++|.-.|+..-+ ...-+.+|...|++.
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~--e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr 982 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDS--EKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWR 982 (1265)
T ss_pred HHHHHHhcccchhhhheeccCH--HHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHH
Confidence 3344445555666655543110 11123344445555566677777766665422 223455666777777
Q ss_pred HHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 048799 206 EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKIL 284 (331)
Q Consensus 206 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 284 (331)
+|..+..++.. +-..-..+-..|+.-+...+++-+|-++..+.... | ...+..+++...+++|..+.....
T Consensus 983 ~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 983 EALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 77777766643 11111122255666677777777777777776654 1 112233344445555555554443
No 279
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.83 E-value=1 Score=38.62 Aligned_cols=73 Identities=11% Similarity=0.037 Sum_probs=53.3
Q ss_pred HHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc-CCc--HHHHHHHH
Q 048799 88 LAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE-RKN--LVSWTSII 160 (331)
Q Consensus 88 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~--~~~~~~l~ 160 (331)
..+..++.+.|+.++|++.+.++.+..+......+...|++++...+.+.++..++.+-.+. -|. ...|+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 34666777889999999999999876544325567788999999999999999998876433 233 34566544
No 280
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.83 E-value=0.92 Score=37.93 Aligned_cols=274 Identities=8% Similarity=0.009 Sum_probs=121.8
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCC--CCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCC---CchHHHHHHHHHHhhc
Q 048799 23 MITGLVKWGELEYARSLFEEMPC--RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTE---PSEITILAVFPAIWQN 97 (331)
Q Consensus 23 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~ 97 (331)
...+..+.|+++.-.+....... ++...+.++... ..|+++++...++.+...-... .....|..........
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l 81 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL 81 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 34667788888887777776664 333444444433 7888888888887762211100 1111222222222222
Q ss_pred CchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHh-----cCCHhHHHHHH---HHhhh----cCCcHHHHHHHHHHHHc
Q 048799 98 GDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK-----CGCIFSALKLF---EDISV----ERKNLVSWTSIISGFAM 165 (331)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~---~~~~~----~~~~~~~~~~l~~~~~~ 165 (331)
..+.+..++.+-...... +......++..... ..+++.-..++ ..+.. ......+|..++..+.+
T Consensus 82 q~L~Elee~~~~~~~~~~---~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk 158 (352)
T PF02259_consen 82 QQLVELEEIIELKSNLSQ---NPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARK 158 (352)
T ss_pred hHHHHHHHHHHHHHhhcc---cHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 233333332222211100 01111112111111 11111111111 11111 12334567777777777
Q ss_pred cCChHHHHHHHHHHHhccCCC---CHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCc--HhhHHHHHHHHHhcCCH
Q 048799 166 HGMGKEAVENFERMQKVVLKP---NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD--IKHYGCLIDMLGRAGRL 240 (331)
Q Consensus 166 ~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~ 240 (331)
.|.++.|...+.++...+..+ .+.....-+...-..|+..+|...++..... .+..+ ......+...+.. ..
T Consensus 159 ~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~ 235 (352)
T PF02259_consen 159 AGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSISNAELKSGLLE--SL 235 (352)
T ss_pred CCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhhhccccccHHHHhhcccc--cc
Confidence 788877777777766533111 2223333344455667777777777766652 11111 1111111111000 00
Q ss_pred HHHHHHHhhcccCCccHHHHHHHHHHHhcC------CchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhh
Q 048799 241 EQAEKVASGIPSEITNVVVWRTLLGACSFH------GNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304 (331)
Q Consensus 241 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 304 (331)
+.....-..-.....-...+..+..-.... +..+.+.+.|+.+.+..|.....+..++..+.+.
T Consensus 236 ~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 236 EVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 000000000000000112233333333333 7788888899999888887777777777665544
No 281
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=0.21 Score=38.12 Aligned_cols=27 Identities=0% Similarity=-0.119 Sum_probs=20.3
Q ss_pred HHHhcCCchhHHHHHHHHHHHhhcCCC
Q 048799 265 GACSFHGNVEMGERVTRKILEMERGYG 291 (331)
Q Consensus 265 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 291 (331)
.--...+++.+|+++|+++-...-+++
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 334577899999999999988555543
No 282
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.80 E-value=0.95 Score=37.86 Aligned_cols=64 Identities=9% Similarity=0.084 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc----CCCccHHHHHHHHhhhccCcchHHHHHHHhh
Q 048799 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMER----GYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319 (331)
Q Consensus 256 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (331)
...+|..++..+.+.|+++.|...+..+....+ ..+......+..+-..|+..+|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445666666777777777777777776665331 1334555566666666777777766666655
No 283
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.80 E-value=0.42 Score=35.48 Aligned_cols=95 Identities=17% Similarity=0.123 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC--C--cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCC---CCHH---
Q 048799 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVER--K--NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK---PNRV--- 189 (331)
Q Consensus 120 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~---p~~~--- 189 (331)
...+..++..|++.|+.+.|.+.|.++.... + -...+..+|......+++..+...+.+....-.. ++..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3456677888888888888888888876552 1 2345666777777778888777777666542211 1111
Q ss_pred -HHHHHHHHHhccCChHHHHHHHHHHHH
Q 048799 190 -TFLSVLNACSHGGLVEEGLKFFDKMVE 216 (331)
Q Consensus 190 -~~~~l~~~~~~~~~~~~a~~~~~~~~~ 216 (331)
.|..| .+...+++..|-+.|-....
T Consensus 116 k~~~gL--~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGL--ANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHH--HHHHhchHHHHHHHHHccCc
Confidence 12222 23346777777777766543
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.73 E-value=0.49 Score=34.04 Aligned_cols=54 Identities=9% Similarity=0.041 Sum_probs=25.5
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCcHhhH-HHHHHHHHhcCCHHHHHHHHhhcccCCcc
Q 048799 200 HGGLVEEGLKFFDKMVEECEVLPDIKHY-GCLIDMLGRAGRLEQAEKVASGIPSEITN 256 (331)
Q Consensus 200 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 256 (331)
+.++.+++..+++.+.- +.|..... ..-...+...|++.+|.++|+++....|.
T Consensus 22 ~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~ 76 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPG 76 (160)
T ss_pred ccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 44555555555555543 23322211 11122345556666666666665554333
No 285
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.71 E-value=0.47 Score=33.64 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhhcC-CcHHHHHHHHHHHHcc
Q 048799 125 CLIDTYAKCGCIFSALKLFEDISVER-KNLVSWTSIISGFAMH 166 (331)
Q Consensus 125 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 166 (331)
.++..+...+.......+++.+...+ .+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 34445555555555555555554442 2344555555555543
No 286
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.54 E-value=1.3 Score=37.59 Aligned_cols=257 Identities=10% Similarity=0.044 Sum_probs=146.5
Q ss_pred HHHHcCCHHHHHHHHhhCCC---CCc------hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHH--H
Q 048799 26 GLVKWGELEYARSLFEEMPC---RNV------VSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPA--I 94 (331)
Q Consensus 26 ~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~ 94 (331)
.+.+.+++.+|..+|.++-+ .+. ..-+.++++|.. ++.+.....+....+..| ...|..+..+ +
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~----~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG----KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC----CchHHHHHHHHHH
Confidence 34678899999999988752 121 223456666654 456666666666533333 2233344433 3
Q ss_pred hhcCchhHHHHHHhhhhhc--CCCcc-----------hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc------CCcHHH
Q 048799 95 WQNGDVRNCQLIHGYGEKR--GFNAF-----------HIHVSNCLIDTYAKCGCIFSALKLFEDISVE------RKNLVS 155 (331)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~--~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~ 155 (331)
.+.+++++|.+.+..-... +..++ +-..-+..++++...|++.++..+++++... .-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 5788889888877655443 22211 2233356678889999999999999988655 247778
Q ss_pred HHHHHHHHHcc--------CC-------hHHHHHHHHHHHhc------cCCCCHHHHHHHHHHHhcc--CChHHHHHHHH
Q 048799 156 WTSIISGFAMH--------GM-------GKEAVENFERMQKV------VLKPNRVTFLSVLNACSHG--GLVEEGLKFFD 212 (331)
Q Consensus 156 ~~~l~~~~~~~--------~~-------~~~a~~~~~~m~~~------~~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~ 212 (331)
|+.++-.+.++ .. ++.+.-..++|... .+.|-...+..++....-. .+..--.+++.
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 88744433221 11 22333333333321 2334444444444433321 12223334444
Q ss_pred HHHHhcCCCCcHh-hHHHHHHHHHhcCCHHHHHHHHhhcccC------CccHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 213 KMVEECEVLPDIK-HYGCLIDMLGRAGRLEQAEKVASGIPSE------ITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 213 ~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
..... -+.|+.. +...+...+.. +.+++..+.+.+... ..-..++..++....+.++...|.+.+.-+..
T Consensus 250 ~We~~-yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 250 NWENF-YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHhh-ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 44333 4455432 33444444444 566666665555433 12346777888888899999999999988888
Q ss_pred hhcCC
Q 048799 286 MERGY 290 (331)
Q Consensus 286 ~~~~~ 290 (331)
++|..
T Consensus 327 ldp~~ 331 (549)
T PF07079_consen 327 LDPRI 331 (549)
T ss_pred cCCcc
Confidence 77765
No 287
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.54 E-value=0.68 Score=34.41 Aligned_cols=132 Identities=11% Similarity=0.031 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHH--HHHHHHhccCChHHHHHHHHHHHHhcCCCCcH----hh
Q 048799 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL--SVLNACSHGGLVEEGLKFFDKMVEECEVLPDI----KH 226 (331)
Q Consensus 153 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~ 226 (331)
+..|..++.... .+.. +.....+++...+....-.++. .+...+...|++++|...++..... +.|. ..
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~ 128 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHH
Confidence 344555555543 3333 5555556665532121212222 2345577889999999988887743 2222 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcC
Q 048799 227 YGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 289 (331)
Q Consensus 227 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 289 (331)
--.|.+.....|.+++|...++......-.......-.+.+...|+-++|...|.++++..++
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 234556778889999999999988775223333444567889999999999999999986533
No 288
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.54 E-value=0.015 Score=29.60 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHhcCCHhHHH
Q 048799 119 HIHVSNCLIDTYAKCGCIFSAL 140 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~ 140 (331)
+..+|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 5556666666666666666554
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.49 E-value=0.042 Score=28.33 Aligned_cols=27 Identities=15% Similarity=0.078 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 259 VWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 259 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
+|..|...|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356677777777777777777777554
No 290
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=0.9 Score=41.44 Aligned_cols=179 Identities=16% Similarity=0.056 Sum_probs=114.4
Q ss_pred HHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc-CCcHHHHHHHHHHHH
Q 048799 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIISGFA 164 (331)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~ 164 (331)
....-+..+.+...++-|+.+.+.-...+.. -.......++.+.+.|++++|...|-+.... .|. .+|.-|.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~--~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s-----~Vi~kfL 408 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDT--LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS-----EVIKKFL 408 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-----HHHHHhc
Confidence 3445666777777777777765543221111 2234445556677889999999888776544 332 2345566
Q ss_pred ccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCC-CcHhhHHHHHHHHHhcCCHHHH
Q 048799 165 MHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVL-PDIKHYGCLIDMLGRAGRLEQA 243 (331)
Q Consensus 165 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 243 (331)
...+...-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+.-. . |.. -| ....+..+.+.+-.++|
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~~fd---~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEWFFD---VETALEILRKSNYLDEA 482 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cceeee---HHHHHHHHHHhChHHHH
Confidence 667778888888888888864 44445668889999999888777766543 2 221 12 23455667777778888
Q ss_pred HHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 048799 244 EKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283 (331)
Q Consensus 244 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 283 (331)
..+-.+... +......++ -..+++++|.+.+..+
T Consensus 483 ~~LA~k~~~---he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK---HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc---CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 777666554 333333333 3567899998888765
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.37 E-value=0.68 Score=33.32 Aligned_cols=54 Identities=11% Similarity=-0.055 Sum_probs=23.0
Q ss_pred hcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 048799 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151 (331)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 151 (331)
+.++.+.+..++..+.-..+..+...+ .-...+...|+|.+|..+|+++....|
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~--~~~~l~i~r~~w~dA~rlLr~l~~~~~ 75 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDL--FDGWLHIVRGDWDDALRLLRELEERAP 75 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHH--HHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 344444444444444444333212222 223334445555555555555443333
No 292
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.35 E-value=1.8 Score=38.02 Aligned_cols=184 Identities=14% Similarity=0.086 Sum_probs=123.0
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC-CcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 197 (331)
+...|...+..-.+.|+.+.+.-+|++..-.- .-...|-..+.-....|+.+-|..++....+-.++-.+.+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 55677888888889999999999999886442 22445555555555669999888888776654433333322222222
Q ss_pred HhccCChHHHHHHHHHHHHhcCCCCcH-hhHHHHHHHHHhcCCHHHHH---HHHhhcccCCccHHHHH----HHHH-HHh
Q 048799 198 CSHGGLVEEGLKFFDKMVEECEVLPDI-KHYGCLIDMLGRAGRLEQAE---KVASGIPSEITNVVVWR----TLLG-ACS 268 (331)
Q Consensus 198 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~p~~~~~~----~l~~-~~~ 268 (331)
.-..|++..|..+++...+. . |+. ..-..-+....+.|+.+.+. .++.......-+..+.. .... .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 44578999999999999886 3 543 23333345567888888888 55554444422222222 2222 244
Q ss_pred cCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhc
Q 048799 269 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305 (331)
Q Consensus 269 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 305 (331)
-.++.+.|..++.++.+..|++...|..++......+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 5689999999999999999999888888888766555
No 293
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.33 E-value=1.7 Score=37.58 Aligned_cols=178 Identities=11% Similarity=0.028 Sum_probs=126.4
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 198 (331)
+.....+++..+...-.+.-.+.+..+|..-..+-..|..++.+|... ..++-..+++++.+.. .+...+..-+..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHH
Confidence 556666788889888888888999999988888888999999999988 6788889999888843 4444454444445
Q ss_pred hccCChHHHHHHHHHHHHhcCCCC--c---HhhHHHHHHHHHhcCCHHHHHHHHhhcccC---CccHHHHHHHHHHHhcC
Q 048799 199 SHGGLVEEGLKFFDKMVEECEVLP--D---IKHYGCLIDMLGRAGRLEQAEKVASGIPSE---ITNVVVWRTLLGACSFH 270 (331)
Q Consensus 199 ~~~~~~~~a~~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~ 270 (331)
...++.+.+..+|.++... -++. + -..|..+... -..+.+....+...+... ..-...+..+-.-|...
T Consensus 142 yEkik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHHhchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 5558889999999998875 2221 1 1244444421 135667777777766655 22345555666778889
Q ss_pred CchhHHHHHHHHHHHhhcCCCccHHHHHHHHh
Q 048799 271 GNVEMGERVTRKILEMERGYGGDYVLMYNILA 302 (331)
Q Consensus 271 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (331)
.++.+|++++..+++.+..+..+...++.-+.
T Consensus 219 eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 219 ENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred cCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 99999999999999877666566666665543
No 294
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.31 E-value=0.077 Score=42.06 Aligned_cols=62 Identities=18% Similarity=0.155 Sum_probs=46.7
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
..++..++..+...|+.+.+...+++.... +-+...|..++.+|.+.|+...|+..|+.+.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 456667777777778888888877777766 34667777888888888888888888877776
No 295
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.20 E-value=1.4 Score=35.87 Aligned_cols=129 Identities=13% Similarity=0.162 Sum_probs=75.7
Q ss_pred hhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHh--c----CCHhHHHHHHHHhhhcCC-----cHHHHHHHHHHHHccCC
Q 048799 100 VRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK--C----GCIFSALKLFEDISVERK-----NLVSWTSIISGFAMHGM 168 (331)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~ 168 (331)
+++...+++.+.+.|+.. +..++.+..-.... . ....+|..+|+.|++..| +...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~-~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKR-SEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHhccCc-cChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 445566788888888776 44444332222221 1 235678899999988744 33445555443 3333
Q ss_pred ----hHHHHHHHHHHHhccCCCCHH-HHHHHHHHHhcc-CC--hHHHHHHHHHHHHhcCCCCcHhhHHHHHH
Q 048799 169 ----GKEAVENFERMQKVVLKPNRV-TFLSVLNACSHG-GL--VEEGLKFFDKMVEECEVLPDIKHYGCLID 232 (331)
Q Consensus 169 ----~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~-~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (331)
.+.+...|+.+.+.|...+.. -+.+-+-+++.. .. ...+.++++.+.+. ++++....|..++-
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 356677788888777655432 233333333322 22 34678888888888 88887777766543
No 296
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.89 E-value=0.084 Score=26.62 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhh
Q 048799 123 SNCLIDTYAKCGCIFSALKLFEDISV 148 (331)
Q Consensus 123 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 148 (331)
|..++.+|...|++++|+..|+++.+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 34444444444444444444444443
No 297
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.87 E-value=0.049 Score=43.86 Aligned_cols=96 Identities=16% Similarity=0.054 Sum_probs=73.1
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcCCCC-cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCC
Q 048799 194 VLNACSHGGLVEEGLKFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHG 271 (331)
Q Consensus 194 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g 271 (331)
-.+-|.++|.+++|++.|..... +.| +..++..-..+|.+..++..|+.-...+... ..-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45568889999999999988774 355 7888888888899999999888877777655 122345665566666678
Q ss_pred chhHHHHHHHHHHHhhcCCCc
Q 048799 272 NVEMGERVTRKILEMERGYGG 292 (331)
Q Consensus 272 ~~~~a~~~~~~~~~~~~~~~~ 292 (331)
...+|.+-++.++++.|.+..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH
Confidence 888888888888888888633
No 298
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.86 E-value=0.8 Score=40.20 Aligned_cols=153 Identities=14% Similarity=0.028 Sum_probs=101.2
Q ss_pred hcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHH
Q 048799 60 RMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSA 139 (331)
Q Consensus 60 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 139 (331)
-.|+++.|..++..+ | ....+.+...+.+.|-.++|+++- .+| .. -.....+.|+++.|
T Consensus 598 mrrd~~~a~~vLp~I-------~-k~~rt~va~Fle~~g~~e~AL~~s-------~D~---d~---rFelal~lgrl~iA 656 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTI-------P-KEIRTKVAHFLESQGMKEQALELS-------TDP---DQ---RFELALKLGRLDIA 656 (794)
T ss_pred hhccccccccccccC-------c-hhhhhhHHhHhhhccchHhhhhcC-------CCh---hh---hhhhhhhcCcHHHH
Confidence 345555555544333 1 234445566666677666666542 222 21 23556788999999
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcC
Q 048799 140 LKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECE 219 (331)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 219 (331)
.++..+. .+..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+.+....+-....+. |
T Consensus 657 ~~la~e~----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~-g 722 (794)
T KOG0276|consen 657 FDLAVEA----NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQ-G 722 (794)
T ss_pred HHHHHhh----cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhh-c
Confidence 8887655 4567899999999999999999999987655 556777777788877666666665554 4
Q ss_pred CCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC
Q 048799 220 VLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253 (331)
Q Consensus 220 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 253 (331)
. .|.-.-+|...|+++++.+++..-...
T Consensus 723 ~------~N~AF~~~~l~g~~~~C~~lLi~t~r~ 750 (794)
T KOG0276|consen 723 K------NNLAFLAYFLSGDYEECLELLISTQRL 750 (794)
T ss_pred c------cchHHHHHHHcCCHHHHHHHHHhcCcC
Confidence 2 223334567789999999988776443
No 299
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.85 E-value=0.84 Score=31.58 Aligned_cols=68 Identities=12% Similarity=0.081 Sum_probs=44.6
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCC
Q 048799 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVL 221 (331)
Q Consensus 152 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 221 (331)
........+......|+-++-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++-+. |++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-chH
Confidence 3344555667777888888888888887653 3567777778888888888888888888888777 653
No 300
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.84 E-value=0.062 Score=27.70 Aligned_cols=25 Identities=8% Similarity=0.167 Sum_probs=15.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHH
Q 048799 50 SWTGIIDGYTRMNRSNGALALFRRM 74 (331)
Q Consensus 50 ~~~~l~~~~~~~~~~~~a~~~~~~~ 74 (331)
+|+.|...|.+.|++++|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3556666677777777777777664
No 301
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.67 E-value=1.3 Score=32.98 Aligned_cols=89 Identities=8% Similarity=0.020 Sum_probs=37.6
Q ss_pred HHHHHhcCCHhHHHHHHHHhhhcCCcH----HHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccC
Q 048799 127 IDTYAKCGCIFSALKLFEDISVERKNL----VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202 (331)
Q Consensus 127 ~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 202 (331)
...+...|++++|...++.......|. .+-..|.......|.+++|+.+++.....+. .......-.+.+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 344455555555555555443322211 1122333444455555555555544333221 1111222333444555
Q ss_pred ChHHHHHHHHHHHHh
Q 048799 203 LVEEGLKFFDKMVEE 217 (331)
Q Consensus 203 ~~~~a~~~~~~~~~~ 217 (331)
+-++|..-|.+..+.
T Consensus 174 ~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 174 DKQEARAAYEKALES 188 (207)
T ss_pred chHHHHHHHHHHHHc
Confidence 555555555555443
No 302
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.62 E-value=0.11 Score=26.12 Aligned_cols=27 Identities=22% Similarity=0.146 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 048799 123 SNCLIDTYAKCGCIFSALKLFEDISVE 149 (331)
Q Consensus 123 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 149 (331)
+..+..++...|++++|++.|++....
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 334444555555555555555544433
No 303
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.58 E-value=0.56 Score=35.02 Aligned_cols=54 Identities=11% Similarity=0.029 Sum_probs=23.5
Q ss_pred HHHHhcCCHhHHHHHHHHhhhcCCc-HHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 048799 128 DTYAKCGCIFSALKLFEDISVERKN-LVSWTSIISGFAMHGMGKEAVENFERMQK 181 (331)
Q Consensus 128 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 181 (331)
.++.+.+.++.|+.-..+.....|+ ..+.-.-..+|.+...+++|+.-|+++..
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3444444555554444444433332 12222223344444555555555555444
No 304
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.57 E-value=0.14 Score=41.30 Aligned_cols=93 Identities=13% Similarity=0.083 Sum_probs=67.1
Q ss_pred HHHHHccCChHHHHHHHHHHHhccCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcC
Q 048799 160 ISGFAMHGMGKEAVENFERMQKVVLKP-NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238 (331)
Q Consensus 160 ~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 238 (331)
..-|.+.|.+++|+..|..... +.| |..++..-..+|.+.+.+..|+.-...++.. . ..-...|+.-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-d-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-D-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-h-HHHHHHHHHHHHHHHHHh
Confidence 3568999999999999988766 456 8899999999999999999888776666543 1 112334555555555567
Q ss_pred CHHHHHHHHhhcccCCcc
Q 048799 239 RLEQAEKVASGIPSEITN 256 (331)
Q Consensus 239 ~~~~A~~~~~~~~~~~p~ 256 (331)
+..+|.+-++......|+
T Consensus 180 ~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPK 197 (536)
T ss_pred hHHHHHHhHHHHHhhCcc
Confidence 777777777766666565
No 305
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.55 E-value=1.3 Score=38.96 Aligned_cols=151 Identities=16% Similarity=0.011 Sum_probs=84.6
Q ss_pred HHcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHH
Q 048799 28 VKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIH 107 (331)
Q Consensus 28 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 107 (331)
.-.|+++.|..++-.++++ ..+.++..+-++|-.++|+++- +|+... .....+.|+++.|.++.
T Consensus 597 vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s----------~D~d~r---Felal~lgrl~iA~~la 660 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS----------TDPDQR---FELALKLGRLDIAFDLA 660 (794)
T ss_pred hhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC----------CChhhh---hhhhhhcCcHHHHHHHH
Confidence 4467777777766666532 3344555555666666665432 222211 22234567777777665
Q ss_pred hhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCC
Q 048799 108 GYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187 (331)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 187 (331)
.+.. +..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+.+....+-....+.|.
T Consensus 661 ~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~--- 723 (794)
T KOG0276|consen 661 VEAN-------SEVKWRQLGDAALSAGELPLASECFLRAR-------DLGSLLLLYTSSGNAEGLAVLASLAKKQGK--- 723 (794)
T ss_pred Hhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc-------chhhhhhhhhhcCChhHHHHHHHHHHhhcc---
Confidence 5432 45567777777777777777777776652 244455555556666655555555555442
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHH
Q 048799 188 RVTFLSVLNACSHGGLVEEGLKFFDKM 214 (331)
Q Consensus 188 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 214 (331)
.|.-..+|...|+++++.+++..-
T Consensus 724 ---~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 ---NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---cchHHHHHHHcCCHHHHHHHHHhc
Confidence 122223455567777776666543
No 306
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=94.41 E-value=2.1 Score=34.16 Aligned_cols=61 Identities=13% Similarity=-0.013 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhh
Q 048799 259 VWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319 (331)
Q Consensus 259 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (331)
++......|...|.+.+|.++-+++++++|-+...+..++..+...|+--.+.+.++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3444556788999999999999999999998888899999999999998888888887754
No 307
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.40 E-value=4 Score=37.36 Aligned_cols=56 Identities=13% Similarity=0.007 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 048799 228 GCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKI 283 (331)
Q Consensus 228 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 283 (331)
..-+..-.+.++++.+...+..|... .-...-.-=+..++...|+.++|...|+.+
T Consensus 316 e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 316 ERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333334556666666666665443 111111111344444456666666666665
No 308
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.31 E-value=1.5 Score=32.05 Aligned_cols=29 Identities=3% Similarity=0.107 Sum_probs=13.5
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHhccCCh
Q 048799 176 FERMQKVVLKPNRVTFLSVLNACSHGGLV 204 (331)
Q Consensus 176 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 204 (331)
++.+.+.+++|+...+..++..+.+.|.+
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 33333444444544555555555544443
No 309
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.27 E-value=0.6 Score=36.88 Aligned_cols=97 Identities=9% Similarity=0.065 Sum_probs=68.9
Q ss_pred HHHHhhCC--CCCchhHHHHHHHHHh-----cCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcC-----------
Q 048799 37 RSLFEEMP--CRNVVSWTGIIDGYTR-----MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNG----------- 98 (331)
Q Consensus 37 ~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------- 98 (331)
...|.... ++|-.+|-+.+..+.. .+.++-.-..++.| +..|+..|..+|+.|++.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m-~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYM-KEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH-HHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 44455554 4566677777666543 35666666677777 77788888888888888765432
Q ss_pred -----chhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCC
Q 048799 99 -----DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135 (331)
Q Consensus 99 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 135 (331)
+-+=++.++++|...|+.| |..+-..|++++.+.+-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmP-dkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMP-DKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCC-chHHHHHHHHHhccccc
Confidence 2234678889999999988 88888888888887664
No 310
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.25 E-value=5.4 Score=38.32 Aligned_cols=113 Identities=11% Similarity=0.086 Sum_probs=66.1
Q ss_pred CCHHHHHH----HHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHH
Q 048799 186 PNRVTFLS----VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVW 260 (331)
Q Consensus 186 p~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~ 260 (331)
|+...+.. ....+...+.+++|--.|+..-+. .--+.+|..+|++.+|..+..++..... -..+-
T Consensus 933 ~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl----------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a 1002 (1265)
T KOG1920|consen 933 PDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL----------EKALKAYKECGDWREALSLAAQLSEGKDELVILA 1002 (1265)
T ss_pred cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH----------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHH
Confidence 55544443 334444556666666666554211 1245667788888888888877765411 11223
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHH
Q 048799 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315 (331)
Q Consensus 261 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 315 (331)
..|+.-+...+++-+|-+++.+... ........|++...|++|.++..
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s-------d~~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS-------DPEEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc-------CHHHHHHHHhhHhHHHHHHHHHH
Confidence 5677778888888888888777653 22333344555556666655543
No 311
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.13 E-value=1.4 Score=31.21 Aligned_cols=54 Identities=9% Similarity=-0.077 Sum_probs=27.0
Q ss_pred hcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 048799 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151 (331)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 151 (331)
..++.+++..++..+.-..+......++ -...+...|+|++|.++|++.....+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~--dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMF--DGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchh--HHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 3455555555555555544432222232 23345556666666666666654433
No 312
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.09 E-value=0.14 Score=27.15 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 258 VVWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 258 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
.+++.+...|...|++++|..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566677777777777777777777765
No 313
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.07 E-value=0.9 Score=29.74 Aligned_cols=63 Identities=14% Similarity=0.247 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHH
Q 048799 169 GKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDM 233 (331)
Q Consensus 169 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 233 (331)
.-+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+-+..+.+.. ...|..+++-
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lqE 88 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHHH
Confidence 33566667777777788999999999999999999999999999888764432 3366666653
No 314
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.04 E-value=0.12 Score=25.62 Aligned_cols=28 Identities=7% Similarity=0.045 Sum_probs=16.7
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHhhcC
Q 048799 262 TLLGACSFHGNVEMGERVTRKILEMERG 289 (331)
Q Consensus 262 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 289 (331)
.+..++.+.|++++|.+.|+++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3445555666666666666666665554
No 315
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.21 E-value=0.16 Score=25.22 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=14.3
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 048799 125 CLIDTYAKCGCIFSALKLFEDISVERK 151 (331)
Q Consensus 125 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 151 (331)
.++.++.+.|++++|.+.|+++....|
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 344555555555555555555554433
No 316
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.20 E-value=1.1 Score=29.10 Aligned_cols=63 Identities=14% Similarity=0.274 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHH
Q 048799 168 MGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLID 232 (331)
Q Consensus 168 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (331)
|.-++.+-++.+....+.|++....+-+.+|.+.+++.-|.++|+-...+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44566677777777778888888888888888888888888888887765332 3445655554
No 317
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.16 E-value=0.12 Score=36.90 Aligned_cols=51 Identities=20% Similarity=0.154 Sum_probs=21.9
Q ss_pred HHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 048799 162 GFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFD 212 (331)
Q Consensus 162 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 212 (331)
.+.+.+.++....+++.+...+...+....+.++..|++.+..+...++++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 16 AFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 333444444444444444443333334444445555554444444444443
No 318
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.87 E-value=4.4 Score=32.99 Aligned_cols=131 Identities=11% Similarity=0.019 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHhccCCCCchHHHHHHHHHHhh--cC----chhHHHHHHhhhhhcCCCcc--hhHHHHHHHHHHHhcCC
Q 048799 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQ--NG----DVRNCQLIHGYGEKRGFNAF--HIHVSNCLIDTYAKCGC 135 (331)
Q Consensus 64 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 135 (331)
+++.+.+++.+ ...|..-+..+|.+....... .. ...++..+|+.|.+..+-.. +...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L-~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKL-KEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHH-HHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 34456777887 777777777777664443332 22 35678899999998754331 22233333322 3333
Q ss_pred ----HhHHHHHHHHhhhc---CCc-HHHHHHHHHHHHccCC--hHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 048799 136 ----IFSALKLFEDISVE---RKN-LVSWTSIISGFAMHGM--GKEAVENFERMQKVVLKPNRVTFLSVLNA 197 (331)
Q Consensus 136 ----~~~A~~~~~~~~~~---~~~-~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 197 (331)
.+.++.+|+.+... ..+ ......++........ ...+.++++.+.+.|+++....|..+.-.
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 35666777777663 223 3344444443332222 45888999999999999888877765443
No 319
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.84 E-value=1.7 Score=37.28 Aligned_cols=89 Identities=16% Similarity=0.134 Sum_probs=39.8
Q ss_pred hccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHH
Q 048799 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGE 277 (331)
Q Consensus 199 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~ 277 (331)
...|+++.+...+..... -+-....+...+++...+.|++++|...-..|... ..++.....-.......|-++++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHH
Confidence 344555555555544432 12223344444555555555555555555554444 222222222222233344555555
Q ss_pred HHHHHHHHhhcC
Q 048799 278 RVTRKILEMERG 289 (331)
Q Consensus 278 ~~~~~~~~~~~~ 289 (331)
..|+++..++|.
T Consensus 412 ~~wk~~~~~~~~ 423 (831)
T PRK15180 412 HYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccCCh
Confidence 555555554443
No 320
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.78 E-value=7.6 Score=35.48 Aligned_cols=165 Identities=10% Similarity=0.039 Sum_probs=89.6
Q ss_pred CchhHHHHHHHHH-hcCChhHHHHHHHHHHhccCCCCchH-----HHHHHHHHHhhcCchhHHHHHHhhhhhcCC----C
Q 048799 47 NVVSWTGIIDGYT-RMNRSNGALALFRRMVACEYTEPSEI-----TILAVFPAIWQNGDVRNCQLIHGYGEKRGF----N 116 (331)
Q Consensus 47 ~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~ 116 (331)
.+.++-.+...+. ...+++.|...+++...... .++-. .-..++..+.+.+... |...+++.++.-. .
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~-~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCE-RHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 3445666666655 67788888888887633221 12211 2223456666666555 7777777655322 1
Q ss_pred cchhHHHHHH-HHHHHhcCCHhHHHHHHHHhhhc-----CCcHHHHHHHHHHH--HccCChHHHHHHHHHHHhccC----
Q 048799 117 AFHIHVSNCL-IDTYAKCGCIFSALKLFEDISVE-----RKNLVSWTSIISGF--AMHGMGKEAVENFERMQKVVL---- 184 (331)
Q Consensus 117 ~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~m~~~~~---- 184 (331)
+ -...+.-+ +..+...++...|.+.++.+... .|....+..++.+. .+.+..+++++.++++.....
T Consensus 136 ~-w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~ 214 (608)
T PF10345_consen 136 A-WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQL 214 (608)
T ss_pred h-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhccc
Confidence 2 23333333 23333347888888888877544 22333444444433 345666777777776643221
Q ss_pred -----CCCHHHHHHHHHHHh--ccCChHHHHHHHHHH
Q 048799 185 -----KPNRVTFLSVLNACS--HGGLVEEGLKFFDKM 214 (331)
Q Consensus 185 -----~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 214 (331)
.|...++..++..++ ..|+++.+...++++
T Consensus 215 ~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 215 DPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 234556666665544 456655665554444
No 321
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.73 E-value=0.64 Score=32.90 Aligned_cols=55 Identities=15% Similarity=0.042 Sum_probs=35.6
Q ss_pred hcCCHHHHHHHHhhcccCCccHHHH-HHHHHHHhcCCchhHHHHHHHHHHHhhcCC
Q 048799 236 RAGRLEQAEKVASGIPSEITNVVVW-RTLLGACSFHGNVEMGERVTRKILEMERGY 290 (331)
Q Consensus 236 ~~g~~~~A~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 290 (331)
..++++++..++..+.-..|+..-. ..-...+...|++.+|.++++.+.+-.+..
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~ 77 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP 77 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc
Confidence 4778888888887776664443222 222344567788888888888887644443
No 322
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.69 E-value=1.5 Score=32.21 Aligned_cols=61 Identities=15% Similarity=0.061 Sum_probs=32.5
Q ss_pred Ccc-HHHHHHHHHHHhcCC-----------chhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 254 ITN-VVVWRTLLGACSFHG-----------NVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 254 ~p~-~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
.|+ ..++..+..+|...+ .+++|...|+++...+|++ ..|..-+.+.. +|-.+..++.+.+
T Consensus 65 ~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 65 NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 443 355555655554332 2566666677777777877 66665544442 4555555555443
No 323
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.53 E-value=2.3 Score=34.37 Aligned_cols=95 Identities=9% Similarity=0.132 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC-----C--cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHH
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVER-----K--NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTF 191 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 191 (331)
+..+...++..-....+.+.+...+-++.... + +..+|-.+ +..-++++++.++..=++.|+-||.+++
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhccccchhhH
Confidence 33344445555555677888888887776441 2 22233222 2334677888888888889999999999
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHh
Q 048799 192 LSVLNACSHGGLVEEGLKFFDKMVEE 217 (331)
Q Consensus 192 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 217 (331)
+.+++.+.+.+++.+|..+.-.|..+
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999988887776654
No 324
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.47 E-value=0.31 Score=24.39 Aligned_cols=26 Identities=27% Similarity=0.194 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhh
Q 048799 123 SNCLIDTYAKCGCIFSALKLFEDISV 148 (331)
Q Consensus 123 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 148 (331)
|..+...|...|++++|...|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455555555555555555555443
No 325
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.30 E-value=2.3 Score=31.98 Aligned_cols=72 Identities=13% Similarity=0.074 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhc--CCCCcHhhHHHHHHHHHhcCCHHHH
Q 048799 171 EAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEEC--EVLPDIKHYGCLIDMLGRAGRLEQA 243 (331)
Q Consensus 171 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A 243 (331)
.|.+.|-++...+..-++.....|...|. ..+.+++..++.++.+.. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444443334443333333332 344455555554444321 1123445555555555555555544
No 326
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.29 E-value=2.4 Score=31.20 Aligned_cols=61 Identities=15% Similarity=0.051 Sum_probs=32.1
Q ss_pred hHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCC-----------HhHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 048799 101 RNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC-----------IFSALKLFEDISVERKNLVSWTSIISGF 163 (331)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 163 (331)
++|+.-|++++...+. ...++..+..+|...+. +++|...|+++...+|+...|+.-+...
T Consensus 52 edAisK~eeAL~I~P~--~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 52 EDAISKFEEALKINPN--KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 3344444455555333 45566667777665432 4455555555555577777777666654
No 327
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.24 E-value=7.8 Score=34.30 Aligned_cols=130 Identities=13% Similarity=0.166 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhCCC--CCch-hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHH
Q 048799 17 LVTWNVMITGLVKWGELEYARSLFEEMPC--RNVV-SWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPA 93 (331)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (331)
...|+.++.---...+.+.+..++..+.. |... -|......=.+.|..+.+.++|++.+ .+++-+...|......
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv--~aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGV--QAIPLSVDLWLSYLAF 122 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HhhhhHHHHHHHHHHH
Confidence 34455555444444444556666666553 3322 23344444455666666666666653 2344444455544433
Q ss_pred H-hhcCchhHHHHHHhhhhhc-CCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 048799 94 I-WQNGDVRNCQLIHGYGEKR-GFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148 (331)
Q Consensus 94 ~-~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 148 (331)
+ ...|+.+.....|+.+... |..-.+...|...+..-...+++.....+|++..+
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 3 2345555555566555442 33332445566666666666666666666666643
No 328
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.18 E-value=10 Score=35.44 Aligned_cols=192 Identities=11% Similarity=-0.019 Sum_probs=107.1
Q ss_pred hhcCchhHHHHHHhhhhhcCCCcc---hh---HHHHHH-HHHHHhcCCHhHHHHHHHHhhhc------CCcHHHHHHHHH
Q 048799 95 WQNGDVRNCQLIHGYGEKRGFNAF---HI---HVSNCL-IDTYAKCGCIFSALKLFEDISVE------RKNLVSWTSIIS 161 (331)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~---~~---~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~l~~ 161 (331)
....++++|..++.++...-..|. .. ..++.| .......|+.++|.++-+..... .+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 456788899888887765433321 11 122222 22334568889999988877655 234556777777
Q ss_pred HHHccCChHHHHHHHHHHHhccCCCCHHHHHHHH-----HHHhccCC--hHHHHHHHHHHHHhcCC-CC----cHhhHHH
Q 048799 162 GFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL-----NACSHGGL--VEEGLKFFDKMVEECEV-LP----DIKHYGC 229 (331)
Q Consensus 162 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~-----~~~~~~~~--~~~a~~~~~~~~~~~~~-~~----~~~~~~~ 229 (331)
+..-.|++++|..+..+..+..-.-+...+..+. ..+..+|. ..+.+..+......... +| -..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999999988776643233333332222 23445663 33333344433332111 11 2234445
Q ss_pred HHHHHHh-cCCHHHHHHHHhhcccCCccH--HH--HHHHHHHHhcCCchhHHHHHHHHHHHh
Q 048799 230 LIDMLGR-AGRLEQAEKVASGIPSEITNV--VV--WRTLLGACSFHGNVEMGERVTRKILEM 286 (331)
Q Consensus 230 l~~~~~~-~g~~~~A~~~~~~~~~~~p~~--~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~ 286 (331)
+..++.+ .+...++..-+.--....|.. .. +..|+......|+.++|...+.++...
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 5555554 122223333333222222322 22 236677888999999999999999984
No 329
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.92 E-value=0.51 Score=36.26 Aligned_cols=86 Identities=9% Similarity=0.031 Sum_probs=57.6
Q ss_pred HhccCChHHHHHHHHHHHHhcCCCCcH-hhHHHHHHHHHhcCCHHHHHHHHhhcccCCccH-HHHHHHHHHHhcCCchhH
Q 048799 198 CSHGGLVEEGLKFFDKMVEECEVLPDI-KHYGCLIDMLGRAGRLEQAEKVASGIPSEITNV-VVWRTLLGACSFHGNVEM 275 (331)
Q Consensus 198 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 275 (331)
|.....+..|...|.+.+ .+.|+. .-|+.=+..+.+..+++.+..--+++.+..|+. .....+..++.....++.
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 455566778888776666 446665 344555666777788888777777777665553 334445566677778888
Q ss_pred HHHHHHHHHHh
Q 048799 276 GERVTRKILEM 286 (331)
Q Consensus 276 a~~~~~~~~~~ 286 (331)
|+..+.++..+
T Consensus 97 aI~~Lqra~sl 107 (284)
T KOG4642|consen 97 AIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHH
Confidence 88888888663
No 330
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.82 E-value=4.4 Score=32.45 Aligned_cols=116 Identities=8% Similarity=0.058 Sum_probs=78.7
Q ss_pred CChHHHHHHHHHHHh-ccCCCCHHHHHHHHHHHhc-c-CChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHH
Q 048799 167 GMGKEAVENFERMQK-VVLKPNRVTFLSVLNACSH-G-GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243 (331)
Q Consensus 167 ~~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~-~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 243 (331)
....+|+++|+.... ..+.-|..+...+++.... . .....-.++.+.+...++-.++..+...+++.+++.+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345667777763322 2244566666666666544 1 233334455555555546677888888899999999999999
Q ss_pred HHHHhhcccC---CccHHHHHHHHHHHhcCCchhHHHHHHHH
Q 048799 244 EKVASGIPSE---ITNVVVWRTLLGACSFHGNVEMGERVTRK 282 (331)
Q Consensus 244 ~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 282 (331)
.+++...... ..|...|..+|..-...|+..-..++.++
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 9998887665 34678899999999999997666655554
No 331
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=91.76 E-value=13 Score=35.86 Aligned_cols=253 Identities=9% Similarity=-0.091 Sum_probs=107.1
Q ss_pred HHHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCc
Q 048799 38 SLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117 (331)
Q Consensus 38 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 117 (331)
.+...+..+++.+-...+..+.+.+.. ++...+..++. .++...-...+.++.+.+........+..+.+. +
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~----D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~ 696 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALG----DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---P 696 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHc----CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---C
Confidence 444444566666666666666665543 34444444422 233333333444443332211111222222222 2
Q ss_pred chhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 048799 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197 (331)
Q Consensus 118 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 197 (331)
+..+....+..+...+.-+ ...+...+ ..++...-...+.++.+.+..+. +..+. ..++...-...+.+
T Consensus 697 -d~~VR~~A~~aL~~~~~~~-~~~l~~~L--~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~a 765 (897)
T PRK13800 697 -DPVVRAAALDVLRALRAGD-AALFAAAL--GDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKG 765 (897)
T ss_pred -CHHHHHHHHHHHHhhccCC-HHHHHHHh--cCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHH
Confidence 4444444555554433211 12222222 23344333444455544443322 11121 22445555555555
Q ss_pred HhccCChHH-HHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHH
Q 048799 198 CSHGGLVEE-GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMG 276 (331)
Q Consensus 198 ~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 276 (331)
+...+..+. +...+..+.. .++...-...+.++...|..+.+...+..+... ++..+-...+.++...+. +++
T Consensus 766 L~~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d-~d~~VR~~Aa~aL~~l~~-~~a 839 (897)
T PRK13800 766 LATLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRA-SAWQVRQGAARALAGAAA-DVA 839 (897)
T ss_pred HHHhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC-CChHHHHHHHHHHHhccc-cch
Confidence 555544332 2333444432 245566666666666666654443333333333 344444445555555544 234
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHH
Q 048799 277 ERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVV 317 (331)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (331)
...+..+.+ +| +.......+.++.+......+...+...
T Consensus 840 ~~~L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~a 878 (897)
T PRK13800 840 VPALVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTA 878 (897)
T ss_pred HHHHHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 444444432 22 2234444444554432223344444433
No 332
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.72 E-value=0.52 Score=24.82 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHH
Q 048799 189 VTFLSVLNACSHGGLVEEGLKFFDKMVE 216 (331)
Q Consensus 189 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 216 (331)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455555555555555555555555543
No 333
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=91.70 E-value=8.3 Score=33.47 Aligned_cols=89 Identities=10% Similarity=-0.005 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHh--cCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhh
Q 048799 228 GCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACS--FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304 (331)
Q Consensus 228 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 304 (331)
+.+++.+.+.|-.++|.+.+..+... +|+...|..+|+.-. ..-+..-+..+|+.+...-..++..|......-...
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~ 543 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPL 543 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccC
Confidence 44555666666667777777666666 445566666664321 122355666666666653334456666666555566
Q ss_pred ccCcchHHHHHH
Q 048799 305 WRYGDAERLRRV 316 (331)
Q Consensus 305 g~~~~a~~~~~~ 316 (331)
|+.+.+-.++.+
T Consensus 544 g~~en~~~~~~r 555 (568)
T KOG2396|consen 544 GRPENCGQIYWR 555 (568)
T ss_pred CCcccccHHHHH
Confidence 666666555443
No 334
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.64 E-value=0.12 Score=41.74 Aligned_cols=85 Identities=7% Similarity=-0.030 Sum_probs=46.0
Q ss_pred cCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHH
Q 048799 237 AGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315 (331)
Q Consensus 237 ~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 315 (331)
.|.++.|.+.|...+.. ++....|..-.+++.+.++...|++-+..+.+++|+...-|-.-..+....|+|.+|.+.+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 45555555555555555 33334444445555555555666666655555555555555555555555555555555555
Q ss_pred HHhhcc
Q 048799 316 VVDERN 321 (331)
Q Consensus 316 ~~~~~~ 321 (331)
..-+.+
T Consensus 207 ~a~kld 212 (377)
T KOG1308|consen 207 LACKLD 212 (377)
T ss_pred HHHhcc
Confidence 554443
No 335
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.51 E-value=0.1 Score=37.14 Aligned_cols=84 Identities=14% Similarity=0.107 Sum_probs=47.4
Q ss_pred HHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCCh
Q 048799 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 169 (331)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 169 (331)
++..+.+.+.......+++.+...+... +....+.++..|++.++.++..++++... ..-...++..|.+.|.+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~-~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-----~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKEN-NPDLHTLLLELYIKYDPYEKLLEFLKTSN-----NYDLDKALRLCEKHGLY 86 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC--SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-----SS-CTHHHHHHHTTTSH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhccccc-CHHHHHHHHHHHHhcCCchHHHHHccccc-----ccCHHHHHHHHHhcchH
Confidence 4455556666666666777666555443 56677777777777766666666665221 12223444555555666
Q ss_pred HHHHHHHHHH
Q 048799 170 KEAVENFERM 179 (331)
Q Consensus 170 ~~a~~~~~~m 179 (331)
+++.-++.++
T Consensus 87 ~~a~~Ly~~~ 96 (143)
T PF00637_consen 87 EEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHc
Confidence 6555555543
No 336
>PRK10941 hypothetical protein; Provisional
Probab=91.37 E-value=1 Score=35.96 Aligned_cols=57 Identities=16% Similarity=-0.082 Sum_probs=34.3
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhh
Q 048799 263 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319 (331)
Q Consensus 263 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (331)
+-.+|.+.++++.|.++.+.+..+.|+++.-+.--+.+|.+.|.+..|..=++...+
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 444555666666666666666666666655555566666666666666655555544
No 337
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=91.28 E-value=0.31 Score=23.42 Aligned_cols=29 Identities=21% Similarity=0.130 Sum_probs=15.1
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhhc
Q 048799 260 WRTLLGACSFHGNVEMGERVTRKILEMER 288 (331)
Q Consensus 260 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 288 (331)
|..+...+...|+++.|...++..++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444555555555555555555554433
No 338
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.12 E-value=5.9 Score=32.14 Aligned_cols=97 Identities=8% Similarity=0.062 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHH
Q 048799 154 VSWTSIISGFAMHGMGKEAVENFERMQKVV---LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCL 230 (331)
Q Consensus 154 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 230 (331)
.+...++..-....+++.++..+-++.... ..|+... ..+++.+. .-+.++++.++..=+.- |+-||..+++.+
T Consensus 65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqY-GiF~dqf~~c~l 141 (418)
T KOG4570|consen 65 LTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQY-GIFPDQFTFCLL 141 (418)
T ss_pred eehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchh-ccccchhhHHHH
Confidence 344455555555667777777776665421 1222222 22333332 23556676666665554 777888888888
Q ss_pred HHHHHhcCCHHHHHHHHhhcccC
Q 048799 231 IDMLGRAGRLEQAEKVASGIPSE 253 (331)
Q Consensus 231 ~~~~~~~g~~~~A~~~~~~~~~~ 253 (331)
++.+.+.+++.+|.++...++..
T Consensus 142 ~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888777776666544
No 339
>PRK09687 putative lyase; Provisional
Probab=91.04 E-value=7.2 Score=31.53 Aligned_cols=232 Identities=10% Similarity=0.014 Sum_probs=94.0
Q ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCCh----hHHHHHHHHHHhccCCCCchHHHHH
Q 048799 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRS----NGALALFRRMVACEYTEPSEITILA 89 (331)
Q Consensus 14 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~~ 89 (331)
.+|.......+.++...|..+-...+.+-+..+|...-...+.++.+.|+. .++...+..+.. -.|+...-..
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~---~D~d~~VR~~ 110 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL---EDKSACVRAS 110 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh---cCCCHHHHHH
Confidence 344445555555555555433333333322344444444455555555542 234455544411 1234443333
Q ss_pred HHHHHhhcCch-----hHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 048799 90 VFPAIWQNGDV-----RNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFA 164 (331)
Q Consensus 90 l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (331)
.+.++...+.. ..+...+..... .+ +..+....+.++.+.|+ .++...+-.+.. .++...-...+.++.
T Consensus 111 A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~-~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~-d~~~~VR~~A~~aLg 184 (280)
T PRK09687 111 AINATGHRCKKNPLYSPKIVEQSQITAF---DK-STNVRFAVAFALSVIND-EAAIPLLINLLK-DPNGDVRNWAAFALN 184 (280)
T ss_pred HHHHHhcccccccccchHHHHHHHHHhh---CC-CHHHHHHHHHHHhccCC-HHHHHHHHHHhc-CCCHHHHHHHHHHHh
Confidence 44443333211 111222212111 12 33344444555555554 334444433332 222223333333333
Q ss_pred ccC-ChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHH
Q 048799 165 MHG-MGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 243 (331)
Q Consensus 165 ~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 243 (331)
+.+ +.+.+...+..+.. .++...-...+.++.+.|+ ..|...+-...+. + + .....+.++.+.|.. +|
T Consensus 185 ~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~-~---~--~~~~a~~ALg~ig~~-~a 253 (280)
T PRK09687 185 SNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKK-G---T--VGDLIIEAAGELGDK-TL 253 (280)
T ss_pred cCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcC-C---c--hHHHHHHHHHhcCCH-hH
Confidence 322 13344444444442 2344444555555555555 2344433333332 1 1 123444555555553 45
Q ss_pred HHHHhhcccCCccHHHHHHHHH
Q 048799 244 EKVASGIPSEITNVVVWRTLLG 265 (331)
Q Consensus 244 ~~~~~~~~~~~p~~~~~~~l~~ 265 (331)
...+..+....||..+-...+.
T Consensus 254 ~p~L~~l~~~~~d~~v~~~a~~ 275 (280)
T PRK09687 254 LPVLDTLLYKFDDNEIITKAID 275 (280)
T ss_pred HHHHHHHHhhCCChhHHHHHHH
Confidence 5555555443344444433333
No 340
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=90.91 E-value=1.8 Score=32.94 Aligned_cols=53 Identities=9% Similarity=-0.004 Sum_probs=24.7
Q ss_pred HHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHh
Q 048799 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI 146 (331)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 146 (331)
+.+.+.+++.+++...+.-++.++. +......+.+.++-.|+|++|..-++-.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPt--da~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPT--DAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCc--cccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 3344444455555544444444322 3334444555555555555555444433
No 341
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.89 E-value=12 Score=33.78 Aligned_cols=85 Identities=13% Similarity=0.020 Sum_probs=37.2
Q ss_pred hhcCchhHHHHHHhhhhh-------cCCCcchhHHHHHHHHHHHhcC-----CHhHHHHHHHHhhhcC-CcHHHHHHHHH
Q 048799 95 WQNGDVRNCQLIHGYGEK-------RGFNAFHIHVSNCLIDTYAKCG-----CIFSALKLFEDISVER-KNLVSWTSIIS 161 (331)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~-~~~~~~~~l~~ 161 (331)
....|.+.|+.+++.+.+ .|. +.....+..+|.+.. +...|..+|......+ |+....-..+.
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~~----~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKGL----PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLY 335 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhcC----CccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 344556666666665544 331 122334455555432 3445666655554332 22222111111
Q ss_pred HHHc-cCChHHHHHHHHHHHhcc
Q 048799 162 GFAM-HGMGKEAVENFERMQKVV 183 (331)
Q Consensus 162 ~~~~-~~~~~~a~~~~~~m~~~~ 183 (331)
.... ..+...|.++|...-+.|
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcC
Confidence 1111 134556666666655554
No 342
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=90.72 E-value=2.1 Score=32.56 Aligned_cols=76 Identities=13% Similarity=-0.009 Sum_probs=48.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh-cCCCCcHhhHHHHHH
Q 048799 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE-CEVLPDIKHYGCLID 232 (331)
Q Consensus 156 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~ 232 (331)
.+..++.+.+.+...+++...++-++.+ +.|..+-..++..+|-.|++++|..-++...+. ....+...+|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 4455677778888888888887766543 335556667788888888888887777665532 022233445555554
No 343
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.57 E-value=0.56 Score=21.95 Aligned_cols=21 Identities=19% Similarity=0.037 Sum_probs=11.3
Q ss_pred HHHHHHHHhcCCHhHHHHHHH
Q 048799 124 NCLIDTYAKCGCIFSALKLFE 144 (331)
Q Consensus 124 ~~l~~~~~~~g~~~~A~~~~~ 144 (331)
..+...+...|+.++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555555555555555543
No 344
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.22 E-value=1.8 Score=37.00 Aligned_cols=131 Identities=13% Similarity=0.066 Sum_probs=69.4
Q ss_pred hcCCHhHHHHHHHHhhhc-CCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHH
Q 048799 132 KCGCIFSALKLFEDISVE-RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF 210 (331)
Q Consensus 132 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 210 (331)
..|++-.|-+-+...... +.++.........+...|+++.+.+.+...... +.....+...+++...+.|+++.|...
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 345554444333333323 223333333333455667777777777655332 334556666777777777777777777
Q ss_pred HHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHH
Q 048799 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLG 265 (331)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~ 265 (331)
-.-|... .+. ++.+...-...--..|-++++...|++.... +|...-|..++.
T Consensus 380 a~~~l~~-eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~ 433 (831)
T PRK15180 380 AEMMLSN-EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLS 433 (831)
T ss_pred HHHHhcc-ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeec
Confidence 7766654 332 3333333333334456677777777766555 344444444443
No 345
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.05 E-value=1 Score=25.62 Aligned_cols=31 Identities=23% Similarity=0.139 Sum_probs=24.6
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHhhcCCCc
Q 048799 262 TLLGACSFHGNVEMGERVTRKILEMERGYGG 292 (331)
Q Consensus 262 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 292 (331)
.+.-++.+.|++++|.+..+.+++.+|++..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4566788999999999999999999998843
No 346
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=89.57 E-value=1 Score=39.45 Aligned_cols=95 Identities=13% Similarity=0.019 Sum_probs=56.2
Q ss_pred cCChHHHHHHHHHHHHhcCCCC--cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHH
Q 048799 201 GGLVEEGLKFFDKMVEECEVLP--DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGE 277 (331)
Q Consensus 201 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~ 277 (331)
.|+...|...+..+.. ..| .......|.+.+.+.|...+|-.++...... ...+.++..+.+++....+++.|+
T Consensus 620 ~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 4666666666665542 233 2233444555566666666666666655444 334556666667777777777777
Q ss_pred HHHHHHHHhhcCCCccHHHHH
Q 048799 278 RVTRKILEMERGYGGDYVLMY 298 (331)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~l~ 298 (331)
+.|+++.+..|+++..-..|.
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLK 717 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHH
Confidence 777777777666655544443
No 347
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.48 E-value=4.4 Score=26.66 Aligned_cols=59 Identities=8% Similarity=0.005 Sum_probs=36.0
Q ss_pred HHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc-HHHHHHHHH
Q 048799 102 NCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTSIIS 161 (331)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~ 161 (331)
+..+-++.+......| ++.+..+.++++.+.+++..|.++|+.++....+ ...|..++.
T Consensus 28 e~rrglN~l~~~DlVP-~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVP-EPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCC-ChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 4455566666666677 7777777788888888888888888777655322 225555543
No 348
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.46 E-value=1.1 Score=34.62 Aligned_cols=100 Identities=14% Similarity=-0.004 Sum_probs=60.0
Q ss_pred HHHhccCChHHHHHHHHHHHHhc-----CCCCcHh-----------hHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHH
Q 048799 196 NACSHGGLVEEGLKFFDKMVEEC-----EVLPDIK-----------HYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVV 258 (331)
Q Consensus 196 ~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~ 258 (331)
+-+.+.|++++|..-|.+++... .-+|... .+....+++...|++-++++...++... +.+..
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvK 265 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK 265 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 34567788888888777764310 1122211 2233334455567777777777776666 33566
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHH
Q 048799 259 VWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV 295 (331)
Q Consensus 259 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 295 (331)
.|-.-..+.+..-+..+|..-|.++++++|.-.++-.
T Consensus 266 A~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 266 AYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 6666666666666777777777777777765444333
No 349
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.42 E-value=9.8 Score=30.57 Aligned_cols=124 Identities=10% Similarity=0.085 Sum_probs=84.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhh-cC-chhHHHHHHhhhhhc-CCCcchhHHHHHHH
Q 048799 51 WTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQ-NG-DVRNCQLIHGYGEKR-GFNAFHIHVSNCLI 127 (331)
Q Consensus 51 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~ 127 (331)
|..|+. +...+.+|+.+|+.....+.+--|......+++.... .+ ....--++.+-+... +..+ +..+...++
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l-~~~vi~~Il 209 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSL-TRNVIISIL 209 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCC-ChhHHHHHH
Confidence 665553 3445778889888541213355777777777777765 22 222333333334332 2334 667778899
Q ss_pred HHHHhcCCHhHHHHHHHHhhhc---CCcHHHHHHHHHHHHccCChHHHHHHHHH
Q 048799 128 DTYAKCGCIFSALKLFEDISVE---RKNLVSWTSIISGFAMHGMGKEAVENFER 178 (331)
Q Consensus 128 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 178 (331)
+.+++.++|.+-.++++..... ..|...|..+|..-...|+..-...+.++
T Consensus 210 ~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 210 EILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 9999999999999999887655 34788999999999999998766665543
No 350
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.67 E-value=1.3 Score=20.92 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=10.6
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHh
Q 048799 124 NCLIDTYAKCGCIFSALKLFEDI 146 (331)
Q Consensus 124 ~~l~~~~~~~g~~~~A~~~~~~~ 146 (331)
..+...+...|+++.|...|+..
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444444444444444444444
No 351
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.35 E-value=12 Score=29.16 Aligned_cols=81 Identities=9% Similarity=-0.210 Sum_probs=39.4
Q ss_pred cCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHH-HHHHHHHHHHccCChHHHHHH
Q 048799 97 NGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV-SWTSIISGFAMHGMGKEAVEN 175 (331)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~ 175 (331)
...++.|+..|.+.+...+. .+..|+.-+.++.+..+++.+..--.+..+..|+.. ....+.........++.|+..
T Consensus 23 ~k~y~~ai~~y~raI~~nP~--~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPT--VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHhcCCC--cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 34455555555444444322 234444445555555555555555555544444432 233334444555555555555
Q ss_pred HHHH
Q 048799 176 FERM 179 (331)
Q Consensus 176 ~~~m 179 (331)
+.+.
T Consensus 101 Lqra 104 (284)
T KOG4642|consen 101 LQRA 104 (284)
T ss_pred HHHH
Confidence 5554
No 352
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.06 E-value=9.9 Score=27.86 Aligned_cols=123 Identities=15% Similarity=0.095 Sum_probs=73.9
Q ss_pred CCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHH
Q 048799 150 RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC 229 (331)
Q Consensus 150 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 229 (331)
.++...+..++..+.+.|++.... .+.+.++-+|.......+-.+. +....+.++--.|.++.+ ..+..
T Consensus 26 ~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~-----~~~~~ 94 (167)
T PF07035_consen 26 PVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLG-----TAYEE 94 (167)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhh-----hhHHH
Confidence 567778888888888888766444 4445666676665554443332 233444444444444311 13445
Q ss_pred HHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 230 LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 230 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
+++.+...|++-+|.++.+..... +......++.+..+.+|...-..+++-..+
T Consensus 95 iievLL~~g~vl~ALr~ar~~~~~--~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQYHKV--DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCc--ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677788889999999988875433 222224456666666776666666665554
No 353
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=86.89 E-value=7.1 Score=25.99 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=39.2
Q ss_pred chhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHH
Q 048799 99 DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFER 178 (331)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 178 (331)
..++|..+.+.+...+.. ...+--+-+..+...|+|++| +........||...|.++.. .+.|-.+++...+.+
T Consensus 21 cH~EA~tIa~wL~~~~~~--~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM--EEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT--HHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH--HHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 456666666666655542 223333344556667777777 22222223466666655543 356666666666666
Q ss_pred HHhcc
Q 048799 179 MQKVV 183 (331)
Q Consensus 179 m~~~~ 183 (331)
+...|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 55443
No 354
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.84 E-value=1.8 Score=23.47 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=8.1
Q ss_pred HHHHHhcCCHhHHHHHHHHh
Q 048799 127 IDTYAKCGCIFSALKLFEDI 146 (331)
Q Consensus 127 ~~~~~~~g~~~~A~~~~~~~ 146 (331)
..+|...|+.+.|.++++++
T Consensus 6 A~ayie~Gd~e~Ar~lL~ev 25 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEV 25 (44)
T ss_pred HHHHHHcCChHHHHHHHHHH
Confidence 33344444444444444433
No 355
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.38 E-value=2.1 Score=23.22 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=11.0
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 048799 54 IIDGYTRMNRSNGALALFRRM 74 (331)
Q Consensus 54 l~~~~~~~~~~~~a~~~~~~~ 74 (331)
|..+|...|+.+.|.++++++
T Consensus 5 LA~ayie~Gd~e~Ar~lL~ev 25 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEV 25 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHH
Confidence 444555555555555555554
No 356
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=86.36 E-value=16 Score=29.41 Aligned_cols=53 Identities=8% Similarity=-0.020 Sum_probs=25.9
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHH----hh--cCCCccHHHHHHHHhhhccCcchHHHH
Q 048799 262 TLLGACSFHGNVEMGERVTRKILE----ME--RGYGGDYVLMYNILAGVWRYGDAERLR 314 (331)
Q Consensus 262 ~l~~~~~~~g~~~~a~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~ 314 (331)
.++..+.+.|.+.+|+.+...+.. .+ |+-...+..=..+|....+..++..-+
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSL 188 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASL 188 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHH
Confidence 355566666777766666555443 11 222233333344555555544444333
No 357
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=86.17 E-value=1.6 Score=21.15 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=21.1
Q ss_pred CchhHHHHHHHHHHHhhcCCCccHHHHHHH
Q 048799 271 GNVEMGERVTRKILEMERGYGGDYVLMYNI 300 (331)
Q Consensus 271 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 300 (331)
|+.+.+..+|+++....|.++..|..++..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 456778888888887777776666665543
No 358
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.99 E-value=7.4 Score=25.36 Aligned_cols=62 Identities=11% Similarity=0.108 Sum_probs=40.1
Q ss_pred ChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHH
Q 048799 203 LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLG 265 (331)
Q Consensus 203 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~ 265 (331)
+.-++.+-++.+... .+.|++.+..+-+++|.+.+++.-|.++++.+..+ ..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGY-DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 344555556665554 67778888888888888888888888888776644 223344554443
No 359
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=85.81 E-value=3.2 Score=24.54 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=11.0
Q ss_pred HHHHHHHHccCChHHHHHHHHHHH
Q 048799 157 TSIISGFAMHGMGKEAVENFERMQ 180 (331)
Q Consensus 157 ~~l~~~~~~~~~~~~a~~~~~~m~ 180 (331)
-.+|.+|...|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444555555555555444443
No 360
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=85.68 E-value=8 Score=25.43 Aligned_cols=51 Identities=18% Similarity=0.124 Sum_probs=27.4
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcC
Q 048799 57 GYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG 114 (331)
Q Consensus 57 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (331)
.+...|+|++|+.+.+.. ..||...|..+-. .+.|--+.+..-+.++...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~-----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL-----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC-----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 355666666666655554 3566555544433 24555555555555555544
No 361
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.66 E-value=2.8 Score=26.05 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=7.8
Q ss_pred hcCChhHHHHHHHHHH
Q 048799 60 RMNRSNGALALFRRMV 75 (331)
Q Consensus 60 ~~~~~~~a~~~~~~~~ 75 (331)
.+++.++|+..|+..+
T Consensus 18 ~~~~~~~Al~~W~~aL 33 (80)
T PF10579_consen 18 HQNETQQALQKWRKAL 33 (80)
T ss_pred ccchHHHHHHHHHHHH
Confidence 3444555555555543
No 362
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.55 E-value=29 Score=31.82 Aligned_cols=194 Identities=13% Similarity=0.137 Sum_probs=116.3
Q ss_pred CCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCch--HHHHHHHHHHh-hcCchhHHHHHHhhhhhcCCCc--ch-
Q 048799 46 RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSE--ITILAVFPAIW-QNGDVRNCQLIHGYGEKRGFNA--FH- 119 (331)
Q Consensus 46 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~--~~- 119 (331)
.+...|..||.. |++.++-+.....++|.. .++..+...+. ...+++.|+..+++.+.....+ .+
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 455677777654 555666664344444543 35556677665 6889999999999876543222 01
Q ss_pred -hHHHHHHHHHHHhcCCHhHHHHHHHHhhhc--C-C---cHHHHHHH-HHHHHccCChHHHHHHHHHHHhcc---CCCCH
Q 048799 120 -IHVSNCLIDTYAKCGCIFSALKLFEDISVE--R-K---NLVSWTSI-ISGFAMHGMGKEAVENFERMQKVV---LKPNR 188 (331)
Q Consensus 120 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~-~---~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~ 188 (331)
-.....++..+.+.+... |...+++.... . + -...+..+ +..+...+++..|.+.++.+...- ..|-.
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 123345677888888777 99888887655 1 1 12233333 333333489999999998886642 23344
Q ss_pred HHHHHHHHHHh--ccCChHHHHHHHHHHHHhc-C-------CCCcHhhHHHHHHHHH--hcCCHHHHHHHHhh
Q 048799 189 VTFLSVLNACS--HGGLVEEGLKFFDKMVEEC-E-------VLPDIKHYGCLIDMLG--RAGRLEQAEKVASG 249 (331)
Q Consensus 189 ~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~-~-------~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~ 249 (331)
..+..++.+.. +.+..+++.+.++.+.... + ..|...++..+++.++ ..|++..+...++.
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44445555433 4566777888887774430 1 1345667777776554 56776666555444
No 363
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=85.38 E-value=3.3 Score=36.51 Aligned_cols=124 Identities=14% Similarity=0.038 Sum_probs=69.2
Q ss_pred HHHHHHHhhCCCCCchhHHHHH---HHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhh
Q 048799 34 EYARSLFEEMPCRNVVSWTGII---DGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYG 110 (331)
Q Consensus 34 ~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 110 (331)
+-+-.++..|..|+...|-.|- --....|+...|...+........ .-..+....|.....+.|-.-.|..++.+.
T Consensus 590 e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p-~~~~v~~v~la~~~~~~~~~~da~~~l~q~ 668 (886)
T KOG4507|consen 590 EIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAP-LQQDVPLVNLANLLIHYGLHLDATKLLLQA 668 (886)
T ss_pred HHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccCh-hhhcccHHHHHHHHHHhhhhccHHHHHHHH
Confidence 4455566666655554443221 112345777777777766632211 122234445566666666666677776666
Q ss_pred hhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHH
Q 048799 111 EKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSII 160 (331)
Q Consensus 111 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~ 160 (331)
+..... .+-++..+.+++....+++.|++.|+++.+..| +...-+.|.
T Consensus 669 l~~~~s--epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 669 LAINSS--EPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLK 717 (886)
T ss_pred Hhhccc--CchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 655422 445556677777777777777777777766544 344444443
No 364
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.28 E-value=16 Score=28.48 Aligned_cols=60 Identities=8% Similarity=0.091 Sum_probs=28.8
Q ss_pred HHhcCCHHHHHHHHhhcccC--CccHHHHH------HHHHHHhcCCchhHHHHHHHHHHHhhcCCCcc
Q 048799 234 LGRAGRLEQAEKVASGIPSE--ITNVVVWR------TLLGACSFHGNVEMGERVTRKILEMERGYGGD 293 (331)
Q Consensus 234 ~~~~g~~~~A~~~~~~~~~~--~p~~~~~~------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 293 (331)
-...+++.+|.++|++.... ..+..-|. .-.-++....+.-.+...+++..+..|....+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 34556666666666665444 11111111 11112223355556666666666666654443
No 365
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.08 E-value=25 Score=30.63 Aligned_cols=295 Identities=12% Similarity=-0.009 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHhhCCC--CCchhHH-----HHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHH
Q 048799 18 VTWNVMITGLVKWG-ELEYARSLFEEMPC--RNVVSWT-----GIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILA 89 (331)
Q Consensus 18 ~~~~~l~~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 89 (331)
.++..|.+.|.... .+..|..++++..+ .+...|. .|+..+.-..++..|.+++.-- .....+-...|..
T Consensus 89 ~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavg--a~sAd~~~~~ylr 166 (629)
T KOG2300|consen 89 QAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVG--AESADHICFPYLR 166 (629)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhcc--ccccchhhhHHHH
Confidence 46677777777766 67777777776542 2222332 4566677778888888885432 1122222223332
Q ss_pred HHHHH------h---hcCchhHHHHHHhhhhhcCCCcchhH--------HHHHHHHHHHhcCCHhHHHHHHHHhhhc---
Q 048799 90 VFPAI------W---QNGDVRNCQLIHGYGEKRGFNAFHIH--------VSNCLIDTYAKCGCIFSALKLFEDISVE--- 149 (331)
Q Consensus 90 l~~~~------~---~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 149 (331)
++-.+ . +..++..+.....++.+.... |.. ..+.-+.-|...|+...+...++++.+.
T Consensus 167 ~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~s--dk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqt 244 (629)
T KOG2300|consen 167 MLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISS--DKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQT 244 (629)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCC--ChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhc
Confidence 22111 1 223344455555555544221 221 1122234455677777777777665432
Q ss_pred --------------CCcHHHHHHH----HHH---------HHccCChHHHHHHHHHHH-------hcc-CCCCHHH----
Q 048799 150 --------------RKNLVSWTSI----ISG---------FAMHGMGKEAVENFERMQ-------KVV-LKPNRVT---- 190 (331)
Q Consensus 150 --------------~~~~~~~~~l----~~~---------~~~~~~~~~a~~~~~~m~-------~~~-~~p~~~~---- 190 (331)
.|.+..+.-+ |.+ -...|-+++|.++-++++ +.. ..|-...
T Consensus 245 ist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~ 324 (629)
T KOG2300|consen 245 ISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMI 324 (629)
T ss_pred cCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 1111111100 111 112344455554444432 221 1221111
Q ss_pred -HHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHh-------hHHHHHHH-HHhcCCHHHHHHHHhhcccC--CccH--
Q 048799 191 -FLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIK-------HYGCLIDM-LGRAGRLEQAEKVASGIPSE--ITNV-- 257 (331)
Q Consensus 191 -~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~-~~~~g~~~~A~~~~~~~~~~--~p~~-- 257 (331)
...++.+-.-.|++.+|++-...|.+-+.-.|.+. ....++.. ++..|.++.|+.-|..+.+. ..+.
T Consensus 325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a 404 (629)
T KOG2300|consen 325 LLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQA 404 (629)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHH
Confidence 12222222346888888888888876544444421 12223333 34568888888888877665 2222
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCc----------cHHHHHHHHhhhccCcchHHHHHHHhh
Q 048799 258 VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG----------DYVLMYNILAGVWRYGDAERLRRVVDE 319 (331)
Q Consensus 258 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (331)
..-..+...|.+.|+.+.-.++++. +.|.+.. .+...+-.....+++.+|...+.+-.+
T Consensus 405 ~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 405 FCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 2223345567777665544444433 4455322 222233344567888888887776544
No 366
>PRK10941 hypothetical protein; Provisional
Probab=85.02 E-value=5.9 Score=31.74 Aligned_cols=66 Identities=9% Similarity=-0.147 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCcc
Q 048799 228 GCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD 293 (331)
Q Consensus 228 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 293 (331)
+.+-.+|.+.++++.|.++.+.+....| ++.-+.--.-.|.+.|.+..|..-++..++..|+++.+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 4455677888889999888888877744 45666667777888889999988888888888877544
No 367
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=84.70 E-value=11 Score=26.07 Aligned_cols=59 Identities=14% Similarity=0.295 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHH
Q 048799 171 EAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLI 231 (331)
Q Consensus 171 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 231 (331)
+..+-++.+....+.|++.....-+++|.+.+++..|.++|+-...+. .+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~--g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC--GAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc--ccHHHHHHHHH
Confidence 455556666666778888888888888888888888888888876642 23333454444
No 368
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=84.41 E-value=0.62 Score=39.58 Aligned_cols=97 Identities=10% Similarity=-0.020 Sum_probs=70.6
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHH-HHHHHHhcCCHHHHHHHHhhcccCCcc-HHHHHHHHHHHhcCC
Q 048799 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC-LIDMLGRAGRLEQAEKVASGIPSEITN-VVVWRTLLGACSFHG 271 (331)
Q Consensus 194 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 271 (331)
-+..+...+.++.|..++.++++. .|+...|-. =..++.+.+++..|..=+..+++..|+ ...|..=..++...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 345566778899999999999854 676555433 347888999999999888888877443 344444455666777
Q ss_pred chhHHHHHHHHHHHhhcCCCcc
Q 048799 272 NVEMGERVTRKILEMERGYGGD 293 (331)
Q Consensus 272 ~~~~a~~~~~~~~~~~~~~~~~ 293 (331)
++.+|...|+......|+++..
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHH
Confidence 8888888888888888887443
No 369
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=84.23 E-value=19 Score=29.61 Aligned_cols=64 Identities=16% Similarity=0.041 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhhc-----CCcHHHHH--HHHHHHHccCChHHHHHHHHHHHh-----ccCCCCH
Q 048799 125 CLIDTYAKCGCIFSALKLFEDISVE-----RKNLVSWT--SIISGFAMHGMGKEAVENFERMQK-----VVLKPNR 188 (331)
Q Consensus 125 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~ 188 (331)
.++...-+.++.++|+++++++... .|+.+.|. .+...+...|+.+++.+++.+... .|++|+.
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Confidence 4445555666777777777777554 35555443 344556677777777777777665 5566644
No 370
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=84.01 E-value=19 Score=28.47 Aligned_cols=58 Identities=19% Similarity=0.056 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcccC-------CccHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 048799 226 HYGCLIDMLGRAGRLEQAEKVASGIPSE-------ITNVVVWRTLLGACSFHGNVEMGERVTRKI 283 (331)
Q Consensus 226 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 283 (331)
....+...|...|++++|.++|+.+... .+...+...+..++...|+.+....+.-++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445667788888888888888877432 223445555666666777776665554433
No 371
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=83.97 E-value=7.6 Score=27.17 Aligned_cols=71 Identities=13% Similarity=-0.025 Sum_probs=35.7
Q ss_pred CchHHHHHHHHHHhhcC---chhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc
Q 048799 82 PSEITILAVFPAIWQNG---DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152 (331)
Q Consensus 82 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 152 (331)
++..+-..+.-++.++. +..+.+.+++.+.+...+........-|.-++.+.+++++++++.+.+.+..|+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 44444444555555444 344455566666552211112222234555666666777777666666555443
No 372
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=83.52 E-value=7.5 Score=29.34 Aligned_cols=32 Identities=22% Similarity=0.153 Sum_probs=14.3
Q ss_pred CCcHhhHHHHHHHHHhcCCHHHHHHHHhhccc
Q 048799 221 LPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252 (331)
Q Consensus 221 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 252 (331)
.|+..+|..++.++...|+.++|.++..++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 373
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=83.26 E-value=22 Score=28.53 Aligned_cols=18 Identities=22% Similarity=0.113 Sum_probs=9.6
Q ss_pred HHHHHcCCHHHHHHHHhh
Q 048799 25 TGLVKWGELEYARSLFEE 42 (331)
Q Consensus 25 ~~~~~~g~~~~A~~~~~~ 42 (331)
+.+.-..|+..|++.-++
T Consensus 43 d~LvV~rdF~aal~tCer 60 (309)
T PF07163_consen 43 DLLVVHRDFQAALETCER 60 (309)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445666666555544
No 374
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=83.17 E-value=17 Score=27.09 Aligned_cols=38 Identities=13% Similarity=0.280 Sum_probs=22.9
Q ss_pred HHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHh
Q 048799 264 LGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302 (331)
Q Consensus 264 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (331)
+..|.+.|.+++|.+++++..+ +|++...-..|.....
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~ 155 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHH
Confidence 3457777788888877777776 5555444333333333
No 375
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=83.16 E-value=10 Score=25.50 Aligned_cols=26 Identities=12% Similarity=0.437 Sum_probs=17.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHh
Q 048799 156 WTSIISGFAMHGMGKEAVENFERMQK 181 (331)
Q Consensus 156 ~~~l~~~~~~~~~~~~a~~~~~~m~~ 181 (331)
|..++..|...|.+++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666677777777777766654
No 376
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.54 E-value=38 Score=30.70 Aligned_cols=273 Identities=10% Similarity=-0.023 Sum_probs=153.0
Q ss_pred HHHHHHHHhhCCC-CCchhHHHHHHH-----HHhcCChhHHHHHHHHHHhc------cCCCCchHHHHHHHHHHhhcC--
Q 048799 33 LEYARSLFEEMPC-RNVVSWTGIIDG-----YTRMNRSNGALALFRRMVAC------EYTEPSEITILAVFPAIWQNG-- 98 (331)
Q Consensus 33 ~~~A~~~~~~~~~-~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~-- 98 (331)
...|..+++...+ .++..-..+..+ +....+.+.|+..|+.+... .+ ++.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 4567777777653 334333333332 34567899999999888331 23 3334555666665533
Q ss_pred ---chhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhc---CCHhHHHHHHHHhhhcCCcHHHHHHHHH-H--HHccCCh
Q 048799 99 ---DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC---GCIFSALKLFEDISVERKNLVSWTSIIS-G--FAMHGMG 169 (331)
Q Consensus 99 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~l~~-~--~~~~~~~ 169 (331)
+...|..++.+.-+.|.. +... .+..++... .+...|..+|..+....-....|..-+. . ..-..+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~--~a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNP--DAQY--LLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCc--hHHH--HHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCH
Confidence 667799999999888765 3333 344444433 3578999999988655433333332221 1 1234578
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHH-HHH---Hh----cCCHH
Q 048799 170 KEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLI-DML---GR----AGRLE 241 (331)
Q Consensus 170 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~----~g~~~ 241 (331)
+.|..++++.-+.|........ ..+..+.. +..+.+.-.+..+.+. +... ..+-...+ ... .. ..+.+
T Consensus 381 ~~A~~~~k~aA~~g~~~A~~~~-~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~-~q~~a~~l~~~~~~~~~~~~~~~~~~ 456 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKGNPSAAYLL-GAFYEYGV-GRYDTALALYLYLAEL-GYEV-AQSNAAYLLDQSEEDLFSRGVISTLE 456 (552)
T ss_pred HHHHHHHHHHHHccChhhHHHH-HHHHHHcc-ccccHHHHHHHHHHHh-hhhH-HhhHHHHHHHhccccccccccccchh
Confidence 9999999999888732223332 33334444 7777777666666554 4332 22211111 111 11 12445
Q ss_pred HHHHHHhhcccCCccHHHHHHHHHHHhc----CCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhh-c--cCcchHHHH
Q 048799 242 QAEKVASGIPSEITNVVVWRTLLGACSF----HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV-W--RYGDAERLR 314 (331)
Q Consensus 242 ~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g--~~~~a~~~~ 314 (331)
.+...+...... -+......+...|.. ..+++.|...+..+.... ......++.++..- | .+..|.+++
T Consensus 457 ~~~~~~~~a~~~-g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~ 532 (552)
T KOG1550|consen 457 RAFSLYSRAAAQ-GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYY 532 (552)
T ss_pred HHHHHHHHHHhc-cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHH
Confidence 555555555443 344555555555433 235788888888877644 34455555554332 1 145677777
Q ss_pred HHHhhc
Q 048799 315 RVVDER 320 (331)
Q Consensus 315 ~~~~~~ 320 (331)
+...+.
T Consensus 533 ~~~~~~ 538 (552)
T KOG1550|consen 533 DQASEE 538 (552)
T ss_pred HHHHhc
Confidence 666553
No 377
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=81.58 E-value=27 Score=28.35 Aligned_cols=190 Identities=11% Similarity=-0.051 Sum_probs=106.4
Q ss_pred HHcCCHHHHHHHHhhCCC-CCchhHHHHHHHHHh----cCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhh----cC
Q 048799 28 VKWGELEYARSLFEEMPC-RNVVSWTGIIDGYTR----MNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQ----NG 98 (331)
Q Consensus 28 ~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 98 (331)
...+++..+...+..... .+......+...|.. ..+..+|...|+.+ ...|. ......+...+.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~-a~~g~---~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCA-AADGL---AEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHH-hhccc---HHHHHhHHHHHhcCCCccc
Confidence 345666667777766653 223334444444432 34567788888766 44433 2233334444433 44
Q ss_pred chhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhc-----C--CHhHHHHHHHHhhhcCCcHHHHHHHHHHHHc----cC
Q 048799 99 DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC-----G--CIFSALKLFEDISVERKNLVSWTSIISGFAM----HG 167 (331)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g--~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 167 (331)
+..+|...+.++.+.|..+ .......+...|..- - +...|...|.++-... +......+...|.. ..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~-a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-~~~a~~~lg~~y~~G~Gv~~ 205 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVE-AALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-NPDAQLLLGRMYEKGLGVPR 205 (292)
T ss_pred CHHHHHHHHHHHHHcCChh-HHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-CHHHHHHHHHHHHcCCCCCc
Confidence 7888888888888887654 222244454444443 1 2336888887775443 34444444444432 34
Q ss_pred ChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccC---------------ChHHHHHHHHHHHHhcCCCCcHhhHH
Q 048799 168 MGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG---------------LVEEGLKFFDKMVEECEVLPDIKHYG 228 (331)
Q Consensus 168 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~~ 228 (331)
+.++|...|.+..+.|. + ...| .+. .+...| +...|...+...... +.........
T Consensus 206 d~~~A~~wy~~Aa~~g~-~-~a~~-~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~ 276 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD-G-AACY-NLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL-GFDNACEALR 276 (292)
T ss_pred CHHHHHHHHHHHHHCCC-H-HHHH-HHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc-CChhHHHHHH
Confidence 78888888888877765 2 2222 222 333333 777888888888776 6555555554
No 378
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=81.18 E-value=41 Score=31.22 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=28.2
Q ss_pred HHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCC
Q 048799 234 LGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 290 (331)
Q Consensus 234 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 290 (331)
+.+.|.++.-..+|+-. + ...+-.-.+++.+|.+..+.|.++.|..
T Consensus 354 lgrKG~leklq~YWdV~--------~---y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 354 LGRKGALEKLQEYWDVA--------T---YFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred hhccchHHHHHHHHhHH--------H---hhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 44555555555544332 1 2334445678888888888888877754
No 379
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=80.89 E-value=6.5 Score=32.14 Aligned_cols=95 Identities=7% Similarity=-0.086 Sum_probs=40.5
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhcCCCC--cHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHH
Q 048799 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP--DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGA 266 (331)
Q Consensus 190 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~ 266 (331)
+|.-=.+-|.+.+++..|...|.+-++.-.-.| +...|+.-.-+-.-.|++..|+.-...+....| +...|..=..+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 344444445555555555555555444311122 223343333333344555555444444444322 22333333334
Q ss_pred HhcCCchhHHHHHHHHHH
Q 048799 267 CSFHGNVEMGERVTRKIL 284 (331)
Q Consensus 267 ~~~~g~~~~a~~~~~~~~ 284 (331)
+....++..|....++..
T Consensus 163 ~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 444444444444444443
No 380
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=80.71 E-value=6.8 Score=29.57 Aligned_cols=46 Identities=11% Similarity=0.024 Sum_probs=38.8
Q ss_pred HHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc
Q 048799 243 AEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288 (331)
Q Consensus 243 A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 288 (331)
..+..++.....|++.+|..++.++...|+.++|.+..+++...-|
T Consensus 130 ~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 130 YIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444455555579999999999999999999999999999998888
No 381
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.51 E-value=18 Score=28.42 Aligned_cols=96 Identities=13% Similarity=-0.009 Sum_probs=65.6
Q ss_pred HHHHHHHccCChHHHHHHHHHHHh------ccCCCCHH-----------HHHHHHHHHhccCChHHHHHHHHHHHHhcCC
Q 048799 158 SIISGFAMHGMGKEAVENFERMQK------VVLKPNRV-----------TFLSVLNACSHGGLVEEGLKFFDKMVEECEV 220 (331)
Q Consensus 158 ~l~~~~~~~~~~~~a~~~~~~m~~------~~~~p~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 220 (331)
.-.+-+.+.|++++|..-|++.+. ..-+|... .+...-.++...|++-++++.-.++... .
T Consensus 183 q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~--~ 260 (329)
T KOG0545|consen 183 QEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH--H 260 (329)
T ss_pred HhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc--C
Confidence 334557788999999999987642 11233221 2333445566778888888888888764 3
Q ss_pred CCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc
Q 048799 221 LPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255 (331)
Q Consensus 221 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 255 (331)
+.+...|-.-..+....=+..+|..-|....+..|
T Consensus 261 ~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 261 PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 44777777777777777788888888888877634
No 382
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=80.21 E-value=50 Score=30.61 Aligned_cols=254 Identities=14% Similarity=0.029 Sum_probs=0.0
Q ss_pred hcCChhHHHHHHHHHHhccCCCCchH----HHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCC
Q 048799 60 RMNRSNGALALFRRMVACEYTEPSEI----TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135 (331)
Q Consensus 60 ~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 135 (331)
..|+..+|.+++.--+-..+.+-... .+.++.-.++..|+- ..+++...++..-.+ ....-.+|.-++...|-
T Consensus 369 H~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e-~v~hG~cLGlGLa~mGS 445 (929)
T KOG2062|consen 369 HRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTAENE-VVRHGACLGLGLAGMGS 445 (929)
T ss_pred eccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhccch-hhhhhhhhhccchhccc
Q ss_pred HhHHHHHHHHhhhc--CCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHH---HHHHHHhccCChHHHHHH
Q 048799 136 IFSALKLFEDISVE--RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL---SVLNACSHGGLVEEGLKF 210 (331)
Q Consensus 136 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~l~~~~~~~~~~~~a~~~ 210 (331)
-+ .++|+.++.. ..+..+-.+-.-+.....--..-.+.+++|...-......-.. .+.-++.--|+.++|..+
T Consensus 446 a~--~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~l 523 (929)
T KOG2062|consen 446 AN--EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPL 523 (929)
T ss_pred cc--HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHH
Q ss_pred HHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHH-hhc
Q 048799 211 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILE-MER 288 (331)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~ 288 (331)
..+|...........-.-.+.-+|+-.|+.....+++.-+... ..|+.-+..+.-++.-..+++....+..-+.+ .+|
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~ 603 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNP 603 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcCh
Q ss_pred -CCCccHHHHHHHHhhhccCcchHHHHHHHhh
Q 048799 289 -GYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319 (331)
Q Consensus 289 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (331)
-...+-..|+.+|...|. .+|..+++-|..
T Consensus 604 HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 604 HVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
No 383
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=79.98 E-value=5.1 Score=25.48 Aligned_cols=61 Identities=10% Similarity=0.062 Sum_probs=28.4
Q ss_pred HHHHhhCCCCCchhHHHHHHHHH---hcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHH
Q 048799 37 RSLFEEMPCRNVVSWTGIIDGYT---RMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNC 103 (331)
Q Consensus 37 ~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 103 (331)
.++++.+.+.++.|....=..-+ ..|+.+.|.+++..+ . .| | ..|...+.++...|.-.-|
T Consensus 22 ~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L-~-rg--~--~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRI-V-QK--E--GWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHh-c-cC--C--cHHHHHHHHHHHcCchhhh
Confidence 34444444444444443333333 446666666666665 2 22 2 2444555555555544333
No 384
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=79.93 E-value=3.6 Score=24.32 Aligned_cols=24 Identities=8% Similarity=0.054 Sum_probs=10.9
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHH
Q 048799 261 RTLLGACSFHGNVEMGERVTRKIL 284 (331)
Q Consensus 261 ~~l~~~~~~~g~~~~a~~~~~~~~ 284 (331)
-.+|.++...|++++|.++.+++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444445555555554444443
No 385
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=79.77 E-value=34 Score=28.37 Aligned_cols=262 Identities=12% Similarity=0.044 Sum_probs=136.2
Q ss_pred HHHcCCHHHHHHHHhhCCCC------C-------chhHHHHHHHHHhcCChhHHHHHHHHHHh---ccCCCCchHHHHHH
Q 048799 27 LVKWGELEYARSLFEEMPCR------N-------VVSWTGIIDGYTRMNRSNGALALFRRMVA---CEYTEPSEITILAV 90 (331)
Q Consensus 27 ~~~~g~~~~A~~~~~~~~~~------~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~l 90 (331)
.....+.+++..+|..+..+ + ..+...+.+.+++.|+.++-..++..... .-+-.........+
T Consensus 14 ~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~L 93 (411)
T KOG1463|consen 14 LVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSL 93 (411)
T ss_pred hcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34455667777777776532 1 12455677788888988887777666511 11111122344455
Q ss_pred HHHHhhcC-chhHHHHHHhhhhh----cCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc------CCcHH-HHHH
Q 048799 91 FPAIWQNG-DVRNCQLIHGYGEK----RGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE------RKNLV-SWTS 158 (331)
Q Consensus 91 ~~~~~~~~-~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~-~~~~ 158 (331)
+..+.... ..+.-+.++..+++ ..-...-...-..++..|...+++.+|+.+...+... .+..+ .+-.
T Consensus 94 vd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~ll 173 (411)
T KOG1463|consen 94 VDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLL 173 (411)
T ss_pred HHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhh
Confidence 66554433 23333444443333 2111112233356889999999999999887666433 12211 1211
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcc----CCCCHHHHHHHHHH--HhccCChHHHHHHHHHHHHhcCCC-CcHhhHHHHH
Q 048799 159 IISGFAMHGMGKEAVENFERMQKVV----LKPNRVTFLSVLNA--CSHGGLVEEGLKFFDKMVEECEVL-PDIKHYGCLI 231 (331)
Q Consensus 159 l~~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~ 231 (331)
=-.+|...++..+|..-+-.....- ++|-...-.-|.++ ++...++..|..+|-+..+.+..- .+.....+|=
T Consensus 174 ESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLK 253 (411)
T KOG1463|consen 174 ESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLK 253 (411)
T ss_pred hhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHH
Confidence 2235666667777776665554321 33332221122222 334478889999888887742211 1233333322
Q ss_pred H---HHHhcCCHHHHHHHHhhccc--C-CccHHHHHHHHHHHhcC--CchhHHHHHHHHHHHhhc
Q 048799 232 D---MLGRAGRLEQAEKVASGIPS--E-ITNVVVWRTLLGACSFH--GNVEMGERVTRKILEMER 288 (331)
Q Consensus 232 ~---~~~~~g~~~~A~~~~~~~~~--~-~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~ 288 (331)
. +-.-.+..++.-.++..=.. . .|+......+..++.+. .+++.|..-|+.=+..+|
T Consensus 254 YMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 254 YMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 1 12234666666555442111 1 56777777777777543 456666665555444333
No 386
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.59 E-value=92 Score=33.31 Aligned_cols=65 Identities=9% Similarity=-0.033 Sum_probs=53.1
Q ss_pred cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhccc
Q 048799 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNA 322 (331)
Q Consensus 256 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (331)
-..+|....+.....|+++.|...+-++.+.. -+..+...+..+-..|+...|+.+++...+...
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 35778888888888999999988888877654 457888889999999999999999998887654
No 387
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=79.47 E-value=31 Score=27.74 Aligned_cols=121 Identities=8% Similarity=-0.122 Sum_probs=63.0
Q ss_pred HHHHhhcCchhHHHHHHhhhhhcC-----CCcchh---H----HHHHHHHHHHhcCCHhHHHHHHHHhhhc--CCcHHHH
Q 048799 91 FPAIWQNGDVRNCQLIHGYGEKRG-----FNAFHI---H----VSNCLIDTYAKCGCIFSALKLFEDISVE--RKNLVSW 156 (331)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~---~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 156 (331)
.+-+.-..|+..|++..++..+.- ...+.. . .+..=|.+++..++|.+++...-+--+. +-.....
T Consensus 42 ad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIl 121 (309)
T PF07163_consen 42 ADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKIL 121 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH
Confidence 334455667777777777665421 111011 1 1222356677777777776654433222 1123334
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhc-----cCChHHHHHHH
Q 048799 157 TSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH-----GGLVEEGLKFF 211 (331)
Q Consensus 157 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-----~~~~~~a~~~~ 211 (331)
..-|-.|.+.+++..+.++-..-....-.-+...|..++..|.. .|.+++|+++.
T Consensus 122 eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 122 ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 44455567777777777766665543211222335555555443 57777777666
No 388
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=79.21 E-value=16 Score=28.89 Aligned_cols=77 Identities=14% Similarity=0.047 Sum_probs=47.4
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHh----cc-CCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 048799 138 SALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK----VV-LKPNRVTFLSVLNACSHGGLVEEGLKFFD 212 (331)
Q Consensus 138 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 212 (331)
.|...|.......-.....-.+...|...|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+--
T Consensus 163 ~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 163 KAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 45555554432222233344566778888888888888887742 12 23445666677777778888877776654
Q ss_pred HH
Q 048799 213 KM 214 (331)
Q Consensus 213 ~~ 214 (331)
++
T Consensus 243 eL 244 (247)
T PF11817_consen 243 EL 244 (247)
T ss_pred HH
Confidence 44
No 389
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.20 E-value=59 Score=30.81 Aligned_cols=193 Identities=14% Similarity=0.031 Sum_probs=111.7
Q ss_pred HHHHhcCCHhHHHHHHHHhhhc--CCc-------HHHHHHHHH-HHHccCChHHHHHHHHHHHhcc----CCCCHHHHHH
Q 048799 128 DTYAKCGCIFSALKLFEDISVE--RKN-------LVSWTSIIS-GFAMHGMGKEAVENFERMQKVV----LKPNRVTFLS 193 (331)
Q Consensus 128 ~~~~~~g~~~~A~~~~~~~~~~--~~~-------~~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~ 193 (331)
-......++++|..+..++... .|+ ...|+.+-. .....|+++.|.++-+.....= ..+....+..
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 3445678899999998877544 111 123554432 3456789999999988776531 2234455667
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcCCCCcHh---hHHHH--HHHHHhcCCHHHH--HHHHhhcccC----Cc----cHH
Q 048799 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIK---HYGCL--IDMLGRAGRLEQA--EKVASGIPSE----IT----NVV 258 (331)
Q Consensus 194 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~l--~~~~~~~g~~~~A--~~~~~~~~~~----~p----~~~ 258 (331)
+..+..-.|++++|..+.....+. .-.-+.. .+..+ ...+...|....+ ...|...... .| -..
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 777777889999999888776554 2222333 23333 2345567743333 3333333222 12 223
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHH----hhcCCCc---cHHHHHHHHhhhccCcchHHHHHHHhhccccC
Q 048799 259 VWRTLLGACSFHGNVEMGERVTRKILE----MERGYGG---DYVLMYNILAGVWRYGDAERLRRVVDERNALK 324 (331)
Q Consensus 259 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 324 (331)
++..+..++.+ .+.+..-.....+ ..|.... .+..++......|+.++|...+.++......+
T Consensus 582 ~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 582 IRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 44444455444 4444444444443 2232211 22367788889999999999999987765444
No 390
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=78.77 E-value=14 Score=25.45 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHH
Q 048799 206 EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLL 264 (331)
Q Consensus 206 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~ 264 (331)
+..+-++....- .+.|++.+...-++++.+.+++..|.++|+.+..+ .+....|..++
T Consensus 67 EvrkglN~l~~y-DlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDY-DLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhcc-ccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 334445555443 77888888888888888888888888888888776 23333455444
No 391
>PRK11619 lytic murein transglycosylase; Provisional
Probab=78.61 E-value=56 Score=30.26 Aligned_cols=118 Identities=9% Similarity=-0.039 Sum_probs=70.9
Q ss_pred CChHHHHHHHHHHHHhcCCCCcH--hhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHH
Q 048799 202 GLVEEGLKFFDKMVEECEVLPDI--KHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERV 279 (331)
Q Consensus 202 ~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 279 (331)
.+.+.|...+........+.+.. .++..+.......+...+|...+........+.....--+......++++.+...
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 44567777777664442333322 2333444333343335667777776554423334444445555578888888888
Q ss_pred HHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhh
Q 048799 280 TRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319 (331)
Q Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (331)
+..+.........-..=++.++...|+.++|...|+....
T Consensus 335 i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 335 LARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8887553333334455578888889999999999988743
No 392
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=78.36 E-value=20 Score=24.91 Aligned_cols=44 Identities=11% Similarity=0.048 Sum_probs=33.7
Q ss_pred HHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHH
Q 048799 102 NCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFED 145 (331)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 145 (331)
.+.++|..|...|+.......|......+...|++.+|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77888888888777665667777788888888888888888765
No 393
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=77.90 E-value=48 Score=29.12 Aligned_cols=103 Identities=12% Similarity=0.117 Sum_probs=75.5
Q ss_pred CCHHHH-HHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHh--cCCHHHHHHHHhhcccC-CccHHHHH
Q 048799 186 PNRVTF-LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR--AGRLEQAEKVASGIPSE-ITNVVVWR 261 (331)
Q Consensus 186 p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~-~p~~~~~~ 261 (331)
|+..|+ +.++..+.+.|-.++|...+..+.. -.+|+...|..+++.-.. .-++..+.++|+.+... ..++..|.
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~ 534 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWM 534 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHH
Confidence 444443 3455666678888999999999876 345688888888865322 23378888888888766 56788888
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHH-hhcCC
Q 048799 262 TLLGACSFHGNVEMGERVTRKILE-MERGY 290 (331)
Q Consensus 262 ~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~ 290 (331)
..+.--...|..+.+-.++.++.+ ++|..
T Consensus 535 ~y~~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 535 DYMKEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred HHHHhhccCCCcccccHHHHHHHHhhChhh
Confidence 888888899999999988888776 55543
No 394
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=77.86 E-value=16 Score=23.57 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISV 148 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 148 (331)
|......+...+...|++++|++.+-.+..
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333333444444444444444444444433
No 395
>PRK12798 chemotaxis protein; Reviewed
Probab=77.61 E-value=45 Score=28.58 Aligned_cols=183 Identities=14% Similarity=0.141 Sum_probs=109.9
Q ss_pred cCCHhHHHHHHHHhhhc--CCcHHHHHHHHHH-HHccCChHHHHHHHHHHHhccCCCCHH----HHHHHHHHHhccCChH
Q 048799 133 CGCIFSALKLFEDISVE--RKNLVSWTSIISG-FAMHGMGKEAVENFERMQKVVLKPNRV----TFLSVLNACSHGGLVE 205 (331)
Q Consensus 133 ~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~ 205 (331)
.|+-.++.+.+..+... ++....|-.|+.+ .....++.+|+.+|+...- .-|... ....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 68888888888877544 3455667777765 4456688999999988765 334332 2333344556788888
Q ss_pred HHHHHHHHHHHhcCCCCcHhh-HHHHHHHHHhcC---CHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHH
Q 048799 206 EGLKFFDKMVEECEVLPDIKH-YGCLIDMLGRAG---RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTR 281 (331)
Q Consensus 206 ~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 281 (331)
++..+-.+...++...|=..- +..+...+.+.+ ..+.-..++..|... -....|..+...-...|+.+.|...-+
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~-~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPE-RQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCch-hHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888877777776555453322 233334444433 233334444444332 234688888888888999999999999
Q ss_pred HHHHhhcCCCccHHHHHHHHhh-----hccCcchHHHHHHHhh
Q 048799 282 KILEMERGYGGDYVLMYNILAG-----VWRYGDAERLRRVVDE 319 (331)
Q Consensus 282 ~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~ 319 (331)
++..+.... ..-...+..|.. ..+.+++.+.+..+..
T Consensus 282 ~A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 282 RALKLADPD-SADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 998865322 333333333322 2345555555554433
No 396
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=77.41 E-value=31 Score=27.10 Aligned_cols=38 Identities=3% Similarity=-0.035 Sum_probs=18.9
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhhcCC--cHHHHHHHHHHH
Q 048799 126 LIDTYAKCGCIFSALKLFEDISVERK--NLVSWTSIISGF 163 (331)
Q Consensus 126 l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~ 163 (331)
+++..-..|+++++...++++....+ +..--|.+..+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 44555556666666666666554433 333344444444
No 397
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=77.35 E-value=5.7 Score=34.11 Aligned_cols=104 Identities=12% Similarity=-0.081 Sum_probs=64.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccCCCCchH-HHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhc
Q 048799 55 IDGYTRMNRSNGALALFRRMVACEYTEPSEI-TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC 133 (331)
Q Consensus 55 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (331)
+..+...++++.|..++.+++. ..||-. .|..-..++.+.+++..|+.=+.++++..+. -...|..-..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~--~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT--YIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCch--hhheeeeccHHHHhH
Confidence 3445667788888888888744 445443 3444446777888888888877777777422 333443334455556
Q ss_pred CCHhHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 048799 134 GCIFSALKLFEDISVERKNLVSWTSIISGF 163 (331)
Q Consensus 134 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 163 (331)
+.+.+|+..|+......|+..-....+.-|
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 667777777777766667655555555443
No 398
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=77.19 E-value=4.4 Score=32.74 Aligned_cols=80 Identities=13% Similarity=0.067 Sum_probs=54.5
Q ss_pred CCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHH-HHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHH
Q 048799 220 VLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRT-LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297 (331)
Q Consensus 220 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 297 (331)
+..|+..|...+..-.+.|.+.+...+|.++....| ++..|-. --.-+...++++.+..++.+.++++|++|..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 344666776666655667777778888887777634 4555533 12234567888888888888888888888777654
Q ss_pred HH
Q 048799 298 YN 299 (331)
Q Consensus 298 ~~ 299 (331)
..
T Consensus 183 fr 184 (435)
T COG5191 183 FR 184 (435)
T ss_pred HH
Confidence 43
No 399
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.18 E-value=18 Score=23.85 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=19.8
Q ss_pred HHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 048799 163 FAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215 (331)
Q Consensus 163 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 215 (331)
+.+.|++++|..+.+.+ ..||...+..|-. .+.|..+.+..-+.++.
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 44445555555444433 2344444433322 23444444444444443
No 400
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=76.97 E-value=17 Score=23.56 Aligned_cols=23 Identities=9% Similarity=0.076 Sum_probs=13.7
Q ss_pred HHHHhcCCchhHHHHHHHHHHHh
Q 048799 264 LGACSFHGNVEMGERVTRKILEM 286 (331)
Q Consensus 264 ~~~~~~~g~~~~a~~~~~~~~~~ 286 (331)
.......|++++|...+++++++
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH
Confidence 34445556666666666666653
No 401
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=76.94 E-value=38 Score=27.38 Aligned_cols=195 Identities=11% Similarity=0.040 Sum_probs=112.1
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCCC----C-------chhHHHHHHHHHhcCChhHHHHHHHHHH---hccCCCCchHHHH
Q 048799 23 MITGLVKWGELEYARSLFEEMPCR----N-------VVSWTGIIDGYTRMNRSNGALALFRRMV---ACEYTEPSEITIL 88 (331)
Q Consensus 23 l~~~~~~~g~~~~A~~~~~~~~~~----~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~ 88 (331)
+..-..+.+++++|+..|.++... + ..+...+...|...|++..--+...... ..-..+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 456667889999999999987632 2 2355667888999998876655544331 1111122334555
Q ss_pred HHHHHHhh-cCchhHHHHHHhhhhhcCCCc----chhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc------CCcHHHHH
Q 048799 89 AVFPAIWQ-NGDVRNCQLIHGYGEKRGFNA----FHIHVSNCLIDTYAKCGCIFSALKLFEDISVE------RKNLVSWT 157 (331)
Q Consensus 89 ~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~ 157 (331)
+++..+.. ...++.-+.+....++..... .....-..++..+.+.|.+.+|+.+...+... .++..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 66665543 345566666655554432211 02223346788899999999999877655432 34433322
Q ss_pred HH-HHHHHccCChHHHHHHHHHHHhc----cCCCCHHHHHHHHHH--HhccCChHHHHHHHHHHHHh
Q 048799 158 SI-ISGFAMHGMGKEAVENFERMQKV----VLKPNRVTFLSVLNA--CSHGGLVEEGLKFFDKMVEE 217 (331)
Q Consensus 158 ~l-~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~ 217 (331)
.+ -.+|...++..++..-+...... -++|-...-.-|+++ .|...++..|..+|-+..+.
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 22 23555556655555555443321 134443333334443 34566788888888887763
No 402
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.72 E-value=52 Score=28.90 Aligned_cols=106 Identities=14% Similarity=0.029 Sum_probs=72.6
Q ss_pred HHHHHhcCCHhHHHHHHHHhhhc-C------C---cHHHHHHHHHHHHccCChHHHHHHHHHHHh-------ccCCCC--
Q 048799 127 IDTYAKCGCIFSALKLFEDISVE-R------K---NLVSWTSIISGFAMHGMGKEAVENFERMQK-------VVLKPN-- 187 (331)
Q Consensus 127 ~~~~~~~g~~~~A~~~~~~~~~~-~------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-------~~~~p~-- 187 (331)
-..+.-.|++.+|.+++....-. . | ....||.+...+.+.|.+..+..+|.+..+ .|+.|.
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 34566788999999888755322 1 1 223467777777788888888777777653 454442
Q ss_pred ---------HHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHH
Q 048799 188 ---------RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235 (331)
Q Consensus 188 ---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 235 (331)
..+||. .-.|...|++-.|.+.|.+.... +..++..|..|.++|.
T Consensus 327 ~tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v--fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV--FHRNPRLWLRLAECCI 380 (696)
T ss_pred eehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHH
Confidence 234553 33567889999999999998874 4557788888888775
No 403
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.71 E-value=81 Score=31.09 Aligned_cols=80 Identities=19% Similarity=0.074 Sum_probs=37.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhcCCCCc----HhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHH
Q 048799 191 FLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD----IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266 (331)
Q Consensus 191 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~ 266 (331)
|...++.+-+.+..+.+.++-..+++. ++++ ..+++.+..-....|.+-+|.+.+-..............++..
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~--l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlviv 1063 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN--LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIV 1063 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 444555555555555555555555542 2222 2234444455555555555555444433221122334444444
Q ss_pred HhcCCc
Q 048799 267 CSFHGN 272 (331)
Q Consensus 267 ~~~~g~ 272 (331)
++..|.
T Consensus 1064 Lfecg~ 1069 (1480)
T KOG4521|consen 1064 LFECGE 1069 (1480)
T ss_pred HHhccc
Confidence 444444
No 404
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=76.63 E-value=16 Score=23.73 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=8.8
Q ss_pred HhcCChhHHHHHHHHH
Q 048799 59 TRMNRSNGALALFRRM 74 (331)
Q Consensus 59 ~~~~~~~~a~~~~~~~ 74 (331)
.+.|++.+|.+.+.+.
T Consensus 9 ~~~~dy~~A~d~L~~~ 24 (94)
T PF12862_consen 9 LRSGDYSEALDALHRY 24 (94)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 4556666665554444
No 405
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=76.56 E-value=46 Score=28.19 Aligned_cols=52 Identities=8% Similarity=-0.001 Sum_probs=23.0
Q ss_pred HHHhcCCchhHHHHHHHHHHHhhcC-CCccHHHHHHHH-hhhccCcchHHHHHH
Q 048799 265 GACSFHGNVEMGERVTRKILEMERG-YGGDYVLMYNIL-AGVWRYGDAERLRRV 316 (331)
Q Consensus 265 ~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~-~~~g~~~~a~~~~~~ 316 (331)
..+.+.|-+..|.++.+-+..++|. ++..-...+..| .+.++++--+++.+.
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 3444555555555555555555554 333333333333 233444444444433
No 406
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=76.35 E-value=1.1e+02 Score=32.68 Aligned_cols=62 Identities=13% Similarity=-0.039 Sum_probs=50.1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHHh
Q 048799 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM 286 (331)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 286 (331)
..+|....+.....|+++.|...+-.+.+.. -+..+.-...-+.+.|+...|+.++++.++.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4577888888888999999988877776662 3455666777888999999999999999974
No 407
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.64 E-value=11 Score=33.97 Aligned_cols=87 Identities=11% Similarity=0.002 Sum_probs=66.7
Q ss_pred HHhcCCHHHHHHHHhhcccCCc-c------HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhcc
Q 048799 234 LGRAGRLEQAEKVASGIPSEIT-N------VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306 (331)
Q Consensus 234 ~~~~g~~~~A~~~~~~~~~~~p-~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 306 (331)
..+..++..+.++|..-....| | ......|.-+|....+.+.|.+++.++.+.+|.++..-.....+....|.
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 4567788888888776443311 1 34456667778889999999999999999999887777778888888899
Q ss_pred CcchHHHHHHHhhc
Q 048799 307 YGDAERLRRVVDER 320 (331)
Q Consensus 307 ~~~a~~~~~~~~~~ 320 (331)
.++|+.+.......
T Consensus 444 Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 444 SEEALTCLQKIKSS 457 (872)
T ss_pred hHHHHHHHHHHHhh
Confidence 99999888776543
No 408
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=75.27 E-value=18 Score=24.75 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHH-------hhcCCCccHH----HHHHHHhhhccCcchHHHHHH
Q 048799 258 VVWRTLLGACSFHGNVEMGERVTRKILE-------MERGYGGDYV----LMYNILAGVWRYGDAERLRRV 316 (331)
Q Consensus 258 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~ 316 (331)
..+..|..++...|++++++.-.+.++. ++.+....|. .-+.++...|+.++|.+.|+.
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 3344445555566666555555444443 2222222222 233455556666666666654
No 409
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=74.30 E-value=10 Score=29.33 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=33.6
Q ss_pred HHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCC
Q 048799 234 LGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 290 (331)
Q Consensus 234 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 290 (331)
..+.|+.+.|.+++.++....| ....|-.+....-+.|+++.|.+.|++..+++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3445666666666666655522 34556666666666666666666666666655543
No 410
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.92 E-value=74 Score=29.33 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=25.7
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhc
Q 048799 22 VMITGLVKWGELEYARSLFEEMP---CRNVVSWTGIIDGYTRM 61 (331)
Q Consensus 22 ~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 61 (331)
.+|..|.|.|++++|.++.++.. ......+...+..|+..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 57777889999999999994433 23344556666666554
No 411
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=73.90 E-value=50 Score=27.40 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=20.1
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHhh
Q 048799 262 TLLGACSFHGNVEMGERVTRKILEME 287 (331)
Q Consensus 262 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 287 (331)
.+...+.+.|..+.|..+++.+++++
T Consensus 159 r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 159 RLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 33444568899999999999999854
No 412
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=73.88 E-value=14 Score=21.01 Aligned_cols=27 Identities=15% Similarity=-0.031 Sum_probs=14.2
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhhcCCc
Q 048799 126 LIDTYAKCGCIFSALKLFEDISVERKN 152 (331)
Q Consensus 126 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 152 (331)
+.-++.+.|++++|.+..+.+.+..|+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 444555555666665555555555443
No 413
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.66 E-value=57 Score=27.88 Aligned_cols=52 Identities=17% Similarity=0.154 Sum_probs=24.5
Q ss_pred HHhcCCHhHHHHHHHHhhhc-CCcHH--HHHHHHHHHH--ccCChHHHHHHHHHHHh
Q 048799 130 YAKCGCIFSALKLFEDISVE-RKNLV--SWTSIISGFA--MHGMGKEAVENFERMQK 181 (331)
Q Consensus 130 ~~~~g~~~~A~~~~~~~~~~-~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~m~~ 181 (331)
+...+++..|.++|+.+... +++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34555666666666655543 22221 2333333332 33455566665555443
No 414
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.33 E-value=7.4 Score=24.26 Aligned_cols=45 Identities=11% Similarity=0.067 Sum_probs=23.7
Q ss_pred cCCchhHHHHHHHHHHHhhcCCCccH---HHHHHHHhhhccCcchHHH
Q 048799 269 FHGNVEMGERVTRKILEMERGYGGDY---VLMYNILAGVWRYGDAERL 313 (331)
Q Consensus 269 ~~g~~~~a~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~ 313 (331)
...+.++|+..|+.+++..++.+.-| ..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666444433333 3344455555555555543
No 415
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=72.60 E-value=98 Score=30.16 Aligned_cols=252 Identities=10% Similarity=0.050 Sum_probs=146.8
Q ss_pred hhcCCchHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHH
Q 048799 10 DELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILA 89 (331)
Q Consensus 10 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 89 (331)
..+..||..+-...+..+.+.+..+....+...+..++...-...+.++.+.+........+..++. .+|+..-..
T Consensus 628 ~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~----~~d~~VR~~ 703 (897)
T PRK13800 628 PYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLG----SPDPVVRAA 703 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhc----CCCHHHHHH
Confidence 3344677777777777887777755444555555566666555555555554332222233434322 256666666
Q ss_pred HHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCCh
Q 048799 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 169 (331)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 169 (331)
.+.++...+..+ ...+.. ..+ .+ +..+-...+.++.+.+..+. +. .+. ..++...-...+.++...+..
T Consensus 704 A~~aL~~~~~~~-~~~l~~-~L~---D~-d~~VR~~Av~aL~~~~~~~~---l~-~~l-~D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 704 ALDVLRALRAGD-AALFAA-ALG---DP-DHRVRIEAVRALVSVDDVES---VA-GAA-TDENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHHhhccCC-HHHHHH-Hhc---CC-CHHHHHHHHHHHhcccCcHH---HH-HHh-cCCCHHHHHHHHHHHHHhccc
Confidence 666665543221 222222 222 22 55666666777776655432 22 222 345555555666666666654
Q ss_pred HH-HHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHh
Q 048799 170 KE-AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVAS 248 (331)
Q Consensus 170 ~~-a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 248 (331)
+. +...+..+.. .++...-...+.++...|..+.+...+..+.+. ++..+-...+.++.+.+.. ++...+.
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d----~d~~VR~~Aa~aL~~l~~~-~a~~~L~ 844 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA----SAWQVRQGAARALAGAAAD-VAVPALV 844 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC----CChHHHHHHHHHHHhcccc-chHHHHH
Confidence 32 3455555544 367777788888888888766555555555543 5667777788888888764 4556655
Q ss_pred hcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 249 GIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 249 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
.+... |+...-...+.++.+.+....+...+..+.+
T Consensus 845 ~~L~D-~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EALTD-PHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhcC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 55554 6777777777777775444567777766664
No 416
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=72.35 E-value=51 Score=26.73 Aligned_cols=15 Identities=13% Similarity=0.073 Sum_probs=7.9
Q ss_pred CHHHHHHHHhhcccC
Q 048799 239 RLEQAEKVASGIPSE 253 (331)
Q Consensus 239 ~~~~A~~~~~~~~~~ 253 (331)
+.++|..+|......
T Consensus 206 d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 206 DLKKAFRWYKKAAEQ 220 (292)
T ss_pred CHHHHHHHHHHHHHC
Confidence 455555555555444
No 417
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.05 E-value=96 Score=29.80 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHH
Q 048799 50 SWTGIIDGYTRMNRSNGALALFRRM 74 (331)
Q Consensus 50 ~~~~l~~~~~~~~~~~~a~~~~~~~ 74 (331)
-|..|+..|...|+.++|+++|.+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l 530 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDL 530 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHH
Confidence 4777888888888888888888887
No 418
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=72.04 E-value=55 Score=27.03 Aligned_cols=96 Identities=14% Similarity=0.119 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc------CCcHHHHHHHHH-HHHccCChHHHHHHHHHHHhccCCCCH---
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVE------RKNLVSWTSIIS-GFAMHGMGKEAVENFERMQKVVLKPNR--- 188 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~~p~~--- 188 (331)
-..++......|++.|+.+.|++.+.+.-.. .-|+..+.+-+. .|....-..+-++..+.+.+.|..-+.
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 3456667788899999999999888766443 234444443333 333444455666666666666654432
Q ss_pred -HHHHHHHHHHhccCChHHHHHHHHHHHH
Q 048799 189 -VTFLSVLNACSHGGLVEEGLKFFDKMVE 216 (331)
Q Consensus 189 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 216 (331)
.+|..+- |....++.+|-.+|-....
T Consensus 183 lKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 183 LKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 3444433 3345678888888776654
No 419
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=71.41 E-value=46 Score=25.83 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=10.9
Q ss_pred HHHHHccCChHHHHHHHHHHH
Q 048799 160 ISGFAMHGMGKEAVENFERMQ 180 (331)
Q Consensus 160 ~~~~~~~~~~~~a~~~~~~m~ 180 (331)
|......|+.+.|++...++.
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHhccHHHHHHHHHHhC
Confidence 344455555555555555543
No 420
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.09 E-value=1.1e+02 Score=30.21 Aligned_cols=124 Identities=8% Similarity=-0.044 Sum_probs=67.5
Q ss_pred HHHHHHHHHhhcCchhHHHHHHhhhhhcCCC--cchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 048799 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFN--AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGF 163 (331)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 163 (331)
.|..+++.+-+.+-.+.+.++-..+++.-.+ |.-..+++.+.+.....|.+-+|...+-+-............++..+
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivL 1064 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVL 1064 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 4666777777777778877777766654222 21234566777777788888887766554322222223445555566
Q ss_pred HccCChH------------HHHH-HHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHH
Q 048799 164 AMHGMGK------------EAVE-NFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209 (331)
Q Consensus 164 ~~~~~~~------------~a~~-~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 209 (331)
+..|.++ +... +++..-.....-...-|..|-..+...+++.+|-.
T Consensus 1065 fecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaat 1123 (1480)
T KOG4521|consen 1065 FECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAAT 1123 (1480)
T ss_pred HhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHH
Confidence 6666543 3333 33322222111223345555555566666665543
No 421
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=71.04 E-value=25 Score=22.66 Aligned_cols=54 Identities=15% Similarity=-0.020 Sum_probs=28.5
Q ss_pred CchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCC
Q 048799 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135 (331)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 135 (331)
.|...-..+...+...|++++|++.+-.+++......+...-..++..+.-.|.
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 445555566666667777777776666666654433234444455554444444
No 422
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=70.82 E-value=53 Score=26.28 Aligned_cols=62 Identities=13% Similarity=0.014 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcccC---Cc-----cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCC
Q 048799 229 CLIDMLGRAGRLEQAEKVASGIPSE---IT-----NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 290 (331)
Q Consensus 229 ~l~~~~~~~g~~~~A~~~~~~~~~~---~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 290 (331)
.|+..|.+.|+++.|-.++--+... .. +...-..++......++++-+.++.+=+..++|..
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld~~~ 253 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALDPEG 253 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 4666677777777776554443322 11 23334455666677788888888887777766654
No 423
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=70.70 E-value=69 Score=27.57 Aligned_cols=55 Identities=13% Similarity=0.150 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC-----------CCchhHHHHHHHHHhcCChhHHHHHHHHH
Q 048799 20 WNVMITGLVKWGELEYARSLFEEMPC-----------RNVVSWTGIIDGYTRMNRSNGALALFRRM 74 (331)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 74 (331)
.-.|+..++-.||+..|+++++.+.- -.+.+|..+.-+|.-.+++.+|.+.|...
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788899999999999998751 13456777888899999999999999887
No 424
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.17 E-value=58 Score=26.50 Aligned_cols=60 Identities=12% Similarity=0.023 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 226 HYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 226 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
++......|..+|.+.+|.++.++.... +.+...|-.++..+...|+--.+.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4455567788999999999999998877 55677888889999999997777777776654
No 425
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=70.08 E-value=6 Score=30.52 Aligned_cols=57 Identities=12% Similarity=0.136 Sum_probs=51.5
Q ss_pred HHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhccc
Q 048799 266 ACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNA 322 (331)
Q Consensus 266 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (331)
...+.++.+.+.+++.++.++.|.....|..++..-.+.|+++.|.+.+++..+.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 446789999999999999999999989999999999999999999999999877654
No 426
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=69.38 E-value=11 Score=30.45 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=13.4
Q ss_pred HHHHHHhhcCchhHHHHHHhhhhhcCCC
Q 048799 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFN 116 (331)
Q Consensus 89 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 116 (331)
..|....+.||+++|+.+++++.+.|..
T Consensus 262 ~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 262 QAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4444444444444444444444444443
No 427
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=69.13 E-value=12 Score=30.18 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=26.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHH
Q 048799 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193 (331)
Q Consensus 156 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 193 (331)
|+..|....+.||+++|++++++..+.|+.--..+|..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 56777777778888888888888877776554455443
No 428
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=68.92 E-value=17 Score=28.02 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=13.1
Q ss_pred HHHHHHhhhccCcchHHHHHHHhhc
Q 048799 296 LMYNILAGVWRYGDAERLRRVVDER 320 (331)
Q Consensus 296 ~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (331)
.++.+..+.|+.++|.+.|.++...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3444555555555555555555443
No 429
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=68.44 E-value=33 Score=23.05 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHH
Q 048799 50 SWTGIIDGYTRMNRSNGALALFRRM 74 (331)
Q Consensus 50 ~~~~l~~~~~~~~~~~~a~~~~~~~ 74 (331)
-|..|+..|...|..++|++++.+.
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l 65 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKL 65 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHH
Confidence 5888888888888888888888887
No 430
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=68.37 E-value=56 Score=25.67 Aligned_cols=40 Identities=10% Similarity=0.114 Sum_probs=18.8
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 048799 175 NFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVE 216 (331)
Q Consensus 175 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 216 (331)
+.+-....++.-+..-...++ +...|++.+|..-++.-..
T Consensus 181 l~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~ 220 (333)
T KOG0991|consen 181 LLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVN 220 (333)
T ss_pred HHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhc
Confidence 333333344444444444333 3445666666666555544
No 431
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=68.24 E-value=1.2e+02 Score=29.58 Aligned_cols=209 Identities=13% Similarity=0.006 Sum_probs=0.0
Q ss_pred hCCCCCchhHH------HHHHHHHhcCChhHHHHHHHHHHhccCCCCc---hHHHHHHHHHHhhcCchhHHHHHHhhhhh
Q 048799 42 EMPCRNVVSWT------GIIDGYTRMNRSNGALALFRRMVACEYTEPS---EITILAVFPAIWQNGDVRNCQLIHGYGEK 112 (331)
Q Consensus 42 ~~~~~~~~~~~------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (331)
+|++-|..|-. ..++-+...++|.+|..+.++=...-.+--| ..-+..+-...-+.++.+-.-.++..+.+
T Consensus 682 QmPRGNLEtI~PR~LVL~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~ 761 (928)
T PF04762_consen 682 QMPRGNLETIYPRALVLAGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRN 761 (928)
T ss_pred EcCCCchhhhccHhHHHHHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhccc
Q ss_pred cCCCcchhHHHHHHH------------HHHHhcCCHhHHHHHHHHhhh-cCCcHHHHHHHHHHHHccC--ChHHHHHHHH
Q 048799 113 RGFNAFHIHVSNCLI------------DTYAKCGCIFSALKLFEDISV-ERKNLVSWTSIISGFAMHG--MGKEAVENFE 177 (331)
Q Consensus 113 ~~~~~~~~~~~~~l~------------~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~ 177 (331)
... +...|.... ......++++..-..+..... ......-...++.+|++.+ ++++|+.+..
T Consensus 762 EDv---t~tmY~~~~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~ 838 (928)
T PF04762_consen 762 EDV---TKTMYKDTYPPSSEAQPNSNSSTASSESKVNKICDAIRKALEKPKDKDKYLQPILTAYVKKSPPDLEEALQLIK 838 (928)
T ss_pred ccc---cccccccccccccccccccccCCCccccHHHHHHHHHHHHhcccccchhhHHHHHHHHHhcCchhHHHHHHHHH
Q ss_pred HHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccH
Q 048799 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNV 257 (331)
Q Consensus 178 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 257 (331)
++.+. +...|++.++.+. -+.+-...|+.-+..| +++-|.-+-+.-.. |+
T Consensus 839 ~l~~~--------------------~~~~ae~alkyl~---fLvDvn~Ly~~ALG~Y----Dl~Lal~VAq~SQk---DP 888 (928)
T PF04762_consen 839 ELREE--------------------DPESAEEALKYLC---FLVDVNKLYDVALGTY----DLELALMVAQQSQK---DP 888 (928)
T ss_pred HHHhc--------------------ChHHHHHHHhHhe---eeccHHHHHHHHhhhc----CHHHHHHHHHHhcc---Ch
Q ss_pred HHHHHHHHHHhcC-------------CchhHHHHHHHHH
Q 048799 258 VVWRTLLGACSFH-------------GNVEMGERVTRKI 283 (331)
Q Consensus 258 ~~~~~l~~~~~~~-------------g~~~~a~~~~~~~ 283 (331)
.-|.-+++-+.+. +++++|++-+.++
T Consensus 889 KEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 889 KEYLPFLQELQKLPPLYRRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred HHHHHHHHHHHhCChhheeeeHhhhhCCHHHHHHHHHhh
No 432
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.23 E-value=76 Score=27.14 Aligned_cols=176 Identities=11% Similarity=-0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHhhhhh--cCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc-----------CC
Q 048799 85 ITILAVFPAIWQNGDVRNCQLIHGYGEK--RGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE-----------RK 151 (331)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~ 151 (331)
..+.-+...|...|+++.|++.|.+..+ ..... ....|-.++..-.-.|+|.....+..++... ++
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh-vInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH-VINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH-HHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCC------CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHh
Q 048799 152 NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK------PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIK 225 (331)
Q Consensus 152 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 225 (331)
....+..+.....+ +++.|.+.|-........ |...+....+.+..--++-+--..+...-.-+.-....+.
T Consensus 230 kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pq 307 (466)
T KOG0686|consen 230 KLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQ 307 (466)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChH
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcccC-------CccHHHHHHHHH
Q 048799 226 HYGCLIDMLGRAGRLEQAEKVASGIPSE-------ITNVVVWRTLLG 265 (331)
Q Consensus 226 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~l~~ 265 (331)
.+..+..-|. +++....++++++... .|++.+.-.+|+
T Consensus 308 lr~il~~fy~--sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 308 LREILFKFYS--SKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHHHHHHhh--hhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
No 433
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=68.22 E-value=61 Score=25.97 Aligned_cols=222 Identities=12% Similarity=0.033 Sum_probs=0.0
Q ss_pred HhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhc----CCCcchhHHHHHHHHHHHhcC
Q 048799 59 TRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR----GFNAFHIHVSNCLIDTYAKCG 134 (331)
Q Consensus 59 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g 134 (331)
++++++++|++++..- ...+.+.|+...|-++...+++- +... +......++..+...+
T Consensus 1 v~~kky~eAidLL~~G----------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~-~~~~~~rl~~l~~~~~ 63 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSG----------------ALILLKHGQYGSGADLALLLIEVYEKSEDPV-DEESIARLIELISLFP 63 (260)
T ss_dssp HHTT-HHHHHHHHHHH----------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT----SHHHHHHHHHHHHHS-
T ss_pred CccccHHHHHHHHHHH----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCC
Q ss_pred CHh-HHHHHHHHhhhcC-------CcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHH
Q 048799 135 CIF-SALKLFEDISVER-------KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEE 206 (331)
Q Consensus 135 ~~~-~A~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 206 (331)
.-+ +-.++.+.+.+-. .++..+..+...|.+.|++.+|...|-.-.. |+...+..++......|...+
T Consensus 64 ~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~----~~~~~~~~ll~~~~~~~~~~e 139 (260)
T PF04190_consen 64 PEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTD----PSAFAYVMLLEEWSTKGYPSE 139 (260)
T ss_dssp TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-H----HHHHHHHHHHHHHHHHTSS--
T ss_pred CCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCC----hhHHHHHHHHHHHHHhcCCcc
Q ss_pred HHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-----------------CccHHHHHHHHHHHhc
Q 048799 207 GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-----------------ITNVVVWRTLLGACSF 269 (331)
Q Consensus 207 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------~p~~~~~~~l~~~~~~ 269 (331)
+--++.+++=. |...|++..|...+....+. ......+..++-..++
T Consensus 140 ~dlfi~RaVL~----------------yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e 203 (260)
T PF04190_consen 140 ADLFIARAVLQ----------------YLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCE 203 (260)
T ss_dssp HHHHHHHHHHH----------------HHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHH----------------HHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHh
Q ss_pred CCchhHHHHHHHHHHH---hhcCCCccHHHHHHHHhhhccCcchHHHHHHH
Q 048799 270 HGNVEMGERVTRKILE---MERGYGGDYVLMYNILAGVWRYGDAERLRRVV 317 (331)
Q Consensus 270 ~g~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (331)
.++.+.-..+.++-.. .+|.-......++..|........--..+..|
T Consensus 204 ~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~~~~~~~~~l~~m 254 (260)
T PF04190_consen 204 RDNLPLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQPPQQQNGMLGDM 254 (260)
T ss_dssp HT-HHHHHHHHHHTHH---HHHHTHHHHHHHHHHHH---S-----------
T ss_pred cCcHHHHHHHHHHhCccccccHHHHHHHHHHHHHHCCCCCCCCCCchHHHH
No 434
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=67.83 E-value=80 Score=27.20 Aligned_cols=62 Identities=15% Similarity=0.098 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhcCchhHHHHHHhhhhhc------CCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 048799 86 TILAVFPAIWQNGDVRNCQLIHGYGEKR------GFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS 147 (331)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 147 (331)
+...|++..+-.||+..|+++++-+.-. .+.+-...++..++-+|.-.+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777888888888888887654221 1122145566677888888999999999988764
No 435
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.63 E-value=1.1e+02 Score=28.71 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 048799 121 HVSNCLIDTYAKCGCIFSALKLFEDIS 147 (331)
Q Consensus 121 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 147 (331)
.....|+..|...+++..|+.++-...
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 344458888888889999888887664
No 436
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=66.76 E-value=74 Score=26.44 Aligned_cols=114 Identities=13% Similarity=0.010 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhc---CCchhHHHHHHHHH
Q 048799 208 LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSF---HGNVEMGERVTRKI 283 (331)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~---~g~~~~a~~~~~~~ 283 (331)
+.+++++.+. .+.+......++..+.+..+.++..+-++++....| +...|...+..... .-.++....+|.+.
T Consensus 51 lsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 51 LSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 4444444443 122444444455555555555555555555544422 34444444443322 22344444444444
Q ss_pred HHhh----c-------C-------CCccHHHHHHHHhhhccCcchHHHHHHHhhcccc
Q 048799 284 LEME----R-------G-------YGGDYVLMYNILAGVWRYGDAERLRRVVDERNAL 323 (331)
Q Consensus 284 ~~~~----~-------~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (331)
++.- . + ....+..+...+..+|..+.|..+++.+.+.++-
T Consensus 129 l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 129 LRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcC
Confidence 4310 0 0 0133445566678889999999999999998773
No 437
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=66.33 E-value=56 Score=24.89 Aligned_cols=77 Identities=10% Similarity=0.039 Sum_probs=54.4
Q ss_pred HHhcCCHhHHHHHHHHhhhcC-C-cHHHHHHHHHHHHccCChHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHhccCCh
Q 048799 130 YAKCGCIFSALKLFEDISVER-K-NLVSWTSIISGFAMHGMGKEAVENFERMQKV---VLKPNRVTFLSVLNACSHGGLV 204 (331)
Q Consensus 130 ~~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~~~~ 204 (331)
+.+.|+ +.|++.|-.+...+ - ++.....+.. |....+.++++.++.+..+. +-.+|+..+..|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 444454 56777777776553 2 3444444444 44578899999999887653 2367889999999999999999
Q ss_pred HHHH
Q 048799 205 EEGL 208 (331)
Q Consensus 205 ~~a~ 208 (331)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
No 438
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=66.21 E-value=41 Score=23.33 Aligned_cols=43 Identities=7% Similarity=0.042 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhccCCC-CHHHHHHHHHHHhccCChHHHHHHHHH
Q 048799 171 EAVENFERMQKVVLKP-NRVTFLSVLNACSHGGLVEEGLKFFDK 213 (331)
Q Consensus 171 ~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 213 (331)
.+.++|..|...|+-. .+..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5566666665555322 234455555555566666666666553
No 439
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.99 E-value=35 Score=22.44 Aligned_cols=54 Identities=11% Similarity=-0.121 Sum_probs=29.4
Q ss_pred HHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHH
Q 048799 103 CQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWT 157 (331)
Q Consensus 103 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 157 (331)
..+.++++...+... .+.....|.-.|.+.|+-+.|.+-|+.-+..-|.+.+|.
T Consensus 56 le~~~ek~~ak~~~v-pPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fm 109 (121)
T COG4259 56 LEKYLEKIGAKNGAV-PPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFM 109 (121)
T ss_pred HHHHHHHHhhcCCCC-CCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHH
Confidence 344455554443332 333444566667777777777777766554455544443
No 440
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=65.71 E-value=76 Score=26.16 Aligned_cols=181 Identities=10% Similarity=-0.013 Sum_probs=0.0
Q ss_pred CHHHHHHHHhhC-C-CCCchhHHHHHHHHHhcC------ChhHHH-------HHHHHHHhccCCCCc--hHHHHHHHHHH
Q 048799 32 ELEYARSLFEEM-P-CRNVVSWTGIIDGYTRMN------RSNGAL-------ALFRRMVACEYTEPS--EITILAVFPAI 94 (331)
Q Consensus 32 ~~~~A~~~~~~~-~-~~~~~~~~~l~~~~~~~~------~~~~a~-------~~~~~~~~~~~~~~~--~~~~~~l~~~~ 94 (331)
.+..++++...+ . +++...|..++..+.... ...... +++..+...-|..+. .......++..
T Consensus 55 ~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~ 134 (324)
T PF11838_consen 55 SYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRAL 134 (324)
T ss_dssp -HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHH
Q ss_pred -hhcCc-----hhHHHHHHhhhhhcCCC---cchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHc
Q 048799 95 -WQNGD-----VRNCQLIHGYGEKRGFN---AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 165 (331)
Q Consensus 95 -~~~~~-----~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (331)
....- .+.|.+.|+.....+.. ..++.....+.....+.|+.+.-..+++... ...+...-..++.+++.
T Consensus 135 ~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~-~~~~~~~k~~~l~aLa~ 213 (324)
T PF11838_consen 135 LLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYK-NSTSPEEKRRLLSALAC 213 (324)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHH-TTSTHHHHHHHHHHHTT
T ss_pred HHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHh-ccCCHHHHHHHHHhhhc
Q ss_pred cCChHHHHHHHHHHHhccCCCCHHHHHHHHHHH-hccCChHHHHHHHHH
Q 048799 166 HGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC-SHGGLVEEGLKFFDK 213 (331)
Q Consensus 166 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~ 213 (331)
..+.+...++++.....+..++......+.... ......+.+.+++..
T Consensus 214 ~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 214 SPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp -S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 441
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=65.54 E-value=61 Score=25.04 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=16.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcccC
Q 048799 229 CLIDMLGRAGRLEQAEKVASGIPSE 253 (331)
Q Consensus 229 ~l~~~~~~~g~~~~A~~~~~~~~~~ 253 (331)
.+.....+.|+.++|.++|.++...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3445556677777777777776655
No 442
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=64.83 E-value=16 Score=18.20 Aligned_cols=21 Identities=14% Similarity=0.379 Sum_probs=8.9
Q ss_pred HhHHHHHHHHhhhcCCcHHHH
Q 048799 136 IFSALKLFEDISVERKNLVSW 156 (331)
Q Consensus 136 ~~~A~~~~~~~~~~~~~~~~~ 156 (331)
++.|..+|++.....|++.+|
T Consensus 3 ~dRAR~IyeR~v~~hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHHhCCCchHH
Confidence 344444444444334444333
No 443
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=64.04 E-value=1.5e+02 Score=29.75 Aligned_cols=65 Identities=11% Similarity=-0.110 Sum_probs=31.9
Q ss_pred CchHHHHHHHHHHhhcCchhHHHHHHhhhhh-----cCCC-cchhHHHHHHHHHHHhcCCHhHHHHHHHHh
Q 048799 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEK-----RGFN-AFHIHVSNCLIDTYAKCGCIFSALKLFEDI 146 (331)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 146 (331)
+....|..+...+.+.++.++|+..-.+..- .|.. |.+...|..+.......+....|...+.+.
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra 1041 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRA 1041 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHH
Confidence 3344556666666667777766665443321 1211 113334444444444445555555555444
No 444
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=63.93 E-value=8.4 Score=26.87 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=22.3
Q ss_pred ccCChHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 048799 165 MHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197 (331)
Q Consensus 165 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 197 (331)
..|.-.+|..+|++|++.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345566788899999999988875 5556544
No 445
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.59 E-value=36 Score=21.78 Aligned_cols=37 Identities=11% Similarity=0.206 Sum_probs=17.2
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHH
Q 048799 200 HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242 (331)
Q Consensus 200 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 242 (331)
..|+.+.|.+++..+. + .+..|..+++++...|.-+-
T Consensus 48 ~~g~~~~ar~LL~~L~-r-----g~~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 48 NHGNESGARELLKRIV-Q-----KEGWFSKFLQALRETEHHEL 84 (88)
T ss_pred ccCcHHHHHHHHHHhc-c-----CCcHHHHHHHHHHHcCchhh
Confidence 3455555555555554 2 12244455555555444333
No 446
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=63.36 E-value=83 Score=25.83 Aligned_cols=45 Identities=13% Similarity=0.256 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC
Q 048799 208 LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253 (331)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 253 (331)
.++++.+.+. ++.|.-..+.-+.-.+.+.=.+.+...+|+.+...
T Consensus 263 ~EL~~~L~~~-~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD 307 (370)
T KOG4567|consen 263 EELWRHLEEK-EIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD 307 (370)
T ss_pred HHHHHHHHhc-CCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC
Confidence 4566666655 77777666666666666666777777777777654
No 447
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=63.05 E-value=51 Score=23.29 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=9.0
Q ss_pred HHhccCChHHHHHHHHHHH
Q 048799 197 ACSHGGLVEEGLKFFDKMV 215 (331)
Q Consensus 197 ~~~~~~~~~~a~~~~~~~~ 215 (331)
++.+.++++.+.++.+.+.
T Consensus 80 g~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 80 GHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 3444444444444444444
No 448
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.68 E-value=1.2e+02 Score=27.41 Aligned_cols=158 Identities=15% Similarity=0.039 Sum_probs=94.7
Q ss_pred hcCChhHHHHHHHHHHhccCC----------CCchHHHHHHHHHHhhcCchhHHHHHHhhh-------hhcCCC------
Q 048799 60 RMNRSNGALALFRRMVACEYT----------EPSEITILAVFPAIWQNGDVRNCQLIHGYG-------EKRGFN------ 116 (331)
Q Consensus 60 ~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~------ 116 (331)
..+.+++|...|.-.+....+ +-...+...+...+-..|+.+-+..+.++. ..-.+.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 345566777777655332211 122345555666777788876665555443 222221
Q ss_pred ------cchhHHHHHH---HHHHHhcCCHhHHHHHHHHhhhcCC--cHHHHHHHHHHHH-ccCChHHHHHHHHHHHhcc-
Q 048799 117 ------AFHIHVSNCL---IDTYAKCGCIFSALKLFEDISVERK--NLVSWTSIISGFA-MHGMGKEAVENFERMQKVV- 183 (331)
Q Consensus 117 ------~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~~- 183 (331)
|.+...|.+| +..+.+.|.+..|.++.+-+.+..| |+.....+|..|+ +.++++-.+++++.....+
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 2133344333 4566788999999999988877755 5667777787765 6678888888888765433
Q ss_pred --CCCCHHHHHHHHHHHhccCC---hHHHHHHHHHHHHh
Q 048799 184 --LKPNRVTFLSVLNACSHGGL---VEEGLKFFDKMVEE 217 (331)
Q Consensus 184 --~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~ 217 (331)
.-||-.-=.+|...|.+... .+.|...+.++...
T Consensus 410 l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 410 LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence 44554433455555655544 45566666666543
No 449
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=62.50 E-value=55 Score=23.43 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=35.1
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCC
Q 048799 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239 (331)
Q Consensus 176 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 239 (331)
.+.+.+.|++++..= ..++..+...++.-.|.++++.+.+. +...+..|.-.-++.+...|-
T Consensus 9 ~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 9 IERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCC
Confidence 344455666655542 33555566666667778888887765 444444444444455555553
No 450
>PF07827 KNTase_C: KNTase C-terminal domain; InterPro: IPR012481 Kanamycin nucleotidyltransferase (KNTase) is involved in conferring resistance to aminoglycoside antibiotics and catalyses the transfer of a nucleoside monophosphate group from a nucleotide to kanamycin. This enzyme is dimeric with each subunit being composed of two domains. The C-terminal domain contains five alpha helices, four of which are organised into an up-and-down alpha helical bundle. Residues found in this domain may contribute to this enzyme's active site []. ; GO: 0016779 nucleotidyltransferase activity, 0046677 response to antibiotic; PDB: 1KNY_A.
Probab=62.43 E-value=41 Score=23.72 Aligned_cols=61 Identities=11% Similarity=0.102 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHh
Q 048799 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVD 318 (331)
Q Consensus 256 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (331)
+...|..++.++.....+.....++.++++ -|+.|.-|..++.... .|+..++.++++...
T Consensus 58 ~~A~~~AmliGL~Nr~~ytT~a~~l~Eal~-Lp~rP~Gyd~l~~lvm-~G~L~d~~~i~~~cE 118 (143)
T PF07827_consen 58 QLAWYGAMLIGLHNRTLYTTSARVLPEALS-LPSRPSGYDELAQLVM-SGQLTDPEKIYESCE 118 (143)
T ss_dssp HHHHHHHHHHHHHCT---SSCCCHHHHHTT-SSS--TTHHHHHHHHH-HTB---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhccceeeccccccHHHhc-CCCCCccHHHHHHHHh-ccccCCHHHHHHHHH
Confidence 345566677777777667666677777765 3555566776665443 667777776666553
No 451
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=62.28 E-value=20 Score=18.38 Aligned_cols=27 Identities=7% Similarity=0.026 Sum_probs=13.7
Q ss_pred HHHHHHhcCCchhHHHHH--HHHHHHhhc
Q 048799 262 TLLGACSFHGNVEMGERV--TRKILEMER 288 (331)
Q Consensus 262 ~l~~~~~~~g~~~~a~~~--~~~~~~~~~ 288 (331)
.+.-.+...|++++|+++ ++-+..+++
T Consensus 6 ~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 344455566666666666 334444433
No 452
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=62.20 E-value=1.6e+02 Score=29.49 Aligned_cols=157 Identities=9% Similarity=-0.004 Sum_probs=100.0
Q ss_pred HHHhcCCHhHHHH------HHHH-hhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHh-----cc--CCCCHHHHHH
Q 048799 129 TYAKCGCIFSALK------LFED-ISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQK-----VV--LKPNRVTFLS 193 (331)
Q Consensus 129 ~~~~~g~~~~A~~------~~~~-~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~--~~p~~~~~~~ 193 (331)
.....|.+.++.+ ++.. |....| ....|..+...+.+.++.++|+..-.+..- .| ..-+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3444556665555 5552 222244 456778888888899999999887655321 12 1223455666
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcC------CCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC---------CccHH
Q 048799 194 VLNACSHGGLVEEGLKFFDKMVEECE------VLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE---------ITNVV 258 (331)
Q Consensus 194 l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~p~~~ 258 (331)
+...+...++...|...+.+.....+ .+|...+++.+-..+...++++.|.++.+.+... .++..
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 66666677788888888877765321 2344455555555556668888888888776544 23456
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 259 VWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 259 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
++..+...+...+++..|....+....
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 777887888888888777766665554
No 453
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=62.11 E-value=10 Score=30.68 Aligned_cols=61 Identities=15% Similarity=0.144 Sum_probs=44.8
Q ss_pred HHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccH
Q 048799 234 LGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY 294 (331)
Q Consensus 234 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 294 (331)
..+.|+.++|.++|+.+....| ++.....+....-..++.-+|-.+|-+++...|.+..+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 3578899999999998877733 456665666555566788888888888888888775443
No 454
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=60.86 E-value=77 Score=24.65 Aligned_cols=61 Identities=8% Similarity=-0.006 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCC---chHHHH--HHHHHHhhcCchhHHHHHHhhhhh
Q 048799 49 VSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP---SEITIL--AVFPAIWQNGDVRNCQLIHGYGEK 112 (331)
Q Consensus 49 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~ 112 (331)
.-.|.|+--|.-...+.+|-+.|..- .++.| |..++. ..+......|+.+.|++..+.+..
T Consensus 27 ~d~n~LVmnylv~eg~~EaA~~Fa~e---~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~P 92 (228)
T KOG2659|consen 27 EDLNRLVMNYLVHEGYVEAAEKFAKE---SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNP 92 (228)
T ss_pred hhHHHHHHHHHHhccHHHHHHHhccc---cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhCh
Confidence 34555555555555555555555432 22333 222222 234444556666666665555443
No 455
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=60.70 E-value=27 Score=19.30 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=14.6
Q ss_pred ccCChHHHHHHHHHHHhccCCCCHHHHHHHH
Q 048799 165 MHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195 (331)
Q Consensus 165 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 195 (331)
+.|-.+++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444445555555555555444444444333
No 456
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=60.66 E-value=38 Score=30.78 Aligned_cols=61 Identities=13% Similarity=0.016 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 048799 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180 (331)
Q Consensus 120 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 180 (331)
......++..|.+.|-.+.|.++.+.+-...-...-|..-+.-+.+.|+...+-.+.+.+.
T Consensus 405 ~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 405 NDDAEKLLEICAELGLEDVAREICKILGQRLLKEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3334556666666666666666666553332222234444444555555554444444443
No 457
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.77 E-value=1.7e+02 Score=28.25 Aligned_cols=18 Identities=39% Similarity=0.364 Sum_probs=14.7
Q ss_pred HHHcCCHHHHHHHHhhCC
Q 048799 27 LVKWGELEYARSLFEEMP 44 (331)
Q Consensus 27 ~~~~g~~~~A~~~~~~~~ 44 (331)
+..+|++++|.+.|.++.
T Consensus 356 lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 356 LFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred HHHhhhHHHHHHHHHhhc
Confidence 456789999999998875
No 458
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=59.74 E-value=56 Score=22.69 Aligned_cols=44 Identities=7% Similarity=0.021 Sum_probs=29.2
Q ss_pred hHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHH
Q 048799 101 RNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFE 144 (331)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 144 (331)
+...++|..|...|+...-...|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33566777777776665345566666667777777777777765
No 459
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=58.77 E-value=63 Score=23.01 Aligned_cols=47 Identities=9% Similarity=-0.011 Sum_probs=33.9
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCc
Q 048799 262 TLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308 (331)
Q Consensus 262 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 308 (331)
.........|++.-|.++.+.+...+|++.......+.+|.+.|.-.
T Consensus 75 ~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 75 ERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 34455667899999999999999999998777777888887776543
No 460
>PF13934 ELYS: Nuclear pore complex assembly
Probab=58.37 E-value=87 Score=24.45 Aligned_cols=105 Identities=21% Similarity=0.204 Sum_probs=59.5
Q ss_pred HHHHHHHHHH--ccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHH
Q 048799 155 SWTSIISGFA--MHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLID 232 (331)
Q Consensus 155 ~~~~l~~~~~--~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (331)
.|...+.++. ..+++++|.+.+-.- .+.|+.. ..++.++...|+.+.|..+++.+. ....+......++.
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~ 149 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHH
Confidence 3455555543 456777777776321 1222221 236666667788888888887653 11223333333333
Q ss_pred HHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhc
Q 048799 233 MLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269 (331)
Q Consensus 233 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~ 269 (331)
. ..+|.+.+|..+-+..... -....+..++..+..
T Consensus 150 ~-La~~~v~EAf~~~R~~~~~-~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRSYPDE-LRRRLFEQLLEHCLE 184 (226)
T ss_pred H-HHcCCHHHHHHHHHhCchh-hhHHHHHHHHHHHHH
Confidence 3 5668888888888777664 124456666665553
No 461
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=57.98 E-value=52 Score=22.97 Aligned_cols=41 Identities=17% Similarity=-0.013 Sum_probs=29.8
Q ss_pred HHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhc
Q 048799 265 GACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305 (331)
Q Consensus 265 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 305 (331)
..+...-+.+.|.++|.++++..|++......++..+....
T Consensus 84 ~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS~~ 124 (139)
T PF12583_consen 84 CSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDSPE 124 (139)
T ss_dssp HHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHHHS
T ss_pred HHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCcHH
Confidence 34455567799999999999999999888888888776543
No 462
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=57.87 E-value=38 Score=27.07 Aligned_cols=55 Identities=18% Similarity=-0.032 Sum_probs=33.9
Q ss_pred HHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhh
Q 048799 265 GACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319 (331)
Q Consensus 265 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (331)
..+.+.++++.|....+....++|.++....--+.+|.+.|...-|..-++...+
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 3455666666666666666666666665555666666666666666665555433
No 463
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=57.77 E-value=67 Score=22.97 Aligned_cols=57 Identities=9% Similarity=-0.002 Sum_probs=30.8
Q ss_pred hccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcC
Q 048799 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134 (331)
Q Consensus 76 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 134 (331)
+..|.+++.. -..++..+...++.-.|.++++++.+.++.. +..+...-++.+...|
T Consensus 13 k~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~i-slaTVYr~L~~l~e~G 69 (145)
T COG0735 13 KEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGI-SLATVYRTLKLLEEAG 69 (145)
T ss_pred HHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCC-CHhHHHHHHHHHHHCC
Confidence 4455555432 2345555555656667777777777766555 3333333345555555
No 464
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=57.48 E-value=1.3e+02 Score=25.99 Aligned_cols=47 Identities=19% Similarity=0.068 Sum_probs=24.4
Q ss_pred HHHHHHHHH---ccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccC
Q 048799 156 WTSIISGFA---MHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202 (331)
Q Consensus 156 ~~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 202 (331)
+-.+++++. +-.+++.|+-++-+|++.|-.|-...-..++-++..-|
T Consensus 249 hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 249 HYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred HHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 334444443 33566666666666666665554444444444443333
No 465
>PF13934 ELYS: Nuclear pore complex assembly
Probab=56.92 E-value=93 Score=24.31 Aligned_cols=105 Identities=11% Similarity=0.039 Sum_probs=59.4
Q ss_pred hHHHHHHHH--HhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHH
Q 048799 50 SWTGIIDGY--TRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127 (331)
Q Consensus 50 ~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 127 (331)
.|..++.++ ...+++++|.+.+.+- .+.|+-. .-++.++...|+.+.|..+++...-. ..+......++
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p----s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~---l~s~~~~~~~~ 148 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP----SLIPWFP--DKILQALLRRGDPKLALRYLRAVGPP---LSSPEALTLYF 148 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC----CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCC---CCCHHHHHHHH
Confidence 344555553 4457777887777443 1223322 23666666778888888887764332 21333333334
Q ss_pred HHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHc
Q 048799 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM 165 (331)
Q Consensus 128 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (331)
.. ..++.+.+|..+-+...... ....+..++..+..
T Consensus 149 ~~-La~~~v~EAf~~~R~~~~~~-~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 149 VA-LANGLVTEAFSFQRSYPDEL-RRRLFEQLLEHCLE 184 (226)
T ss_pred HH-HHcCCHHHHHHHHHhCchhh-hHHHHHHHHHHHHH
Confidence 44 66688888888777664321 13456666665553
No 466
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=56.83 E-value=20 Score=22.82 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=14.1
Q ss_pred CHHHHHHHHhhCCCCCchhHHHHHHHHHhcC
Q 048799 32 ELEYARSLFEEMPCRNVVSWTGIIDGYTRMN 62 (331)
Q Consensus 32 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 62 (331)
+.++|..+++.++..+..+|.....++...|
T Consensus 45 r~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 45 RRDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3444444444444444444444444444433
No 467
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=56.69 E-value=48 Score=22.19 Aligned_cols=22 Identities=14% Similarity=0.351 Sum_probs=13.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHh
Q 048799 125 CLIDTYAKCGCIFSALKLFEDI 146 (331)
Q Consensus 125 ~l~~~~~~~g~~~~A~~~~~~~ 146 (331)
.++.-|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 4555666667777777777665
No 468
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=56.68 E-value=1.2e+02 Score=25.33 Aligned_cols=59 Identities=14% Similarity=0.177 Sum_probs=32.2
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhccc
Q 048799 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252 (331)
Q Consensus 194 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 252 (331)
|.-+..+.|+..+|.+.++.+.+...+..-..+...|+.++....-+.+...++-+.-+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44444566777777777776665422211223344566666666666665555544433
No 469
>PF15469 Sec5: Exocyst complex component Sec5
Probab=56.45 E-value=81 Score=23.52 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=8.4
Q ss_pred HhccCChHHHHHHHHHHH
Q 048799 198 CSHGGLVEEGLKFFDKMV 215 (331)
Q Consensus 198 ~~~~~~~~~a~~~~~~~~ 215 (331)
+.+.|+++.+...|.++.
T Consensus 96 ~i~~~dy~~~i~dY~kak 113 (182)
T PF15469_consen 96 CIKKGDYDQAINDYKKAK 113 (182)
T ss_pred HHHcCcHHHHHHHHHHHH
Confidence 334455555544444443
No 470
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=55.76 E-value=1.1e+02 Score=24.94 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHhccCChHHHH
Q 048799 185 KPNRVTFLSVLNACSHGGLVEEGL 208 (331)
Q Consensus 185 ~p~~~~~~~l~~~~~~~~~~~~a~ 208 (331)
..|+..|..+..+|.-.|+...+.
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHH
Confidence 356667777777777777655544
No 471
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.49 E-value=31 Score=28.61 Aligned_cols=91 Identities=8% Similarity=-0.077 Sum_probs=54.6
Q ss_pred hcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcH-HHHHHHHHHHHccCChHHHHH
Q 048799 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNL-VSWTSIISGFAMHGMGKEAVE 174 (331)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~ 174 (331)
..|.++.|++.|...+...+. ....|..-.+++.+.++...|++=+......+|+. ..|-.-..+-...|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~--~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPP--LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCCc--hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 456677777777777666433 45555555666677777777777666666555543 233333334445577777777
Q ss_pred HHHHHHhccCCCCH
Q 048799 175 NFERMQKVVLKPNR 188 (331)
Q Consensus 175 ~~~~m~~~~~~p~~ 188 (331)
.|....+.+..+..
T Consensus 204 dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 204 DLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHhccccHHH
Confidence 77777665544433
No 472
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=55.47 E-value=1.4e+02 Score=25.94 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=16.2
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 048799 184 LKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVE 216 (331)
Q Consensus 184 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 216 (331)
+.||..+.+.+...++..-..+-...+|+-..+
T Consensus 179 itPd~Y~lnWf~sLFas~~Stev~~a~WdlY~q 211 (669)
T KOG3636|consen 179 ITPDMYTLNWFASLFASSMSTEVCHALWDLYIQ 211 (669)
T ss_pred cCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 445555555444444444444445555555444
No 473
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=55.37 E-value=1.2e+02 Score=25.27 Aligned_cols=117 Identities=9% Similarity=0.043 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHhccCCCCHHHHHHHHHHHhc------cCChHHHHHHHHHHHHhcCCCCcHh-hHHHHHHHHHhcCCHH
Q 048799 169 GKEAVENFERMQKVVLKPNRVTFLSVLNACSH------GGLVEEGLKFFDKMVEECEVLPDIK-HYGCLIDMLGRAGRLE 241 (331)
Q Consensus 169 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~------~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~ 241 (331)
.+++..++++....+. |.+......|.++-. .-++.....+|+.+... .|++. +.|. .-+.....-++
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~---apSPvV~LNR-AVAla~~~Gp~ 346 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA---APSPVVTLNR-AVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh---CCCCeEeehH-HHHHHHhhhHH
Confidence 4556666666655554 666666555554331 23455566666666543 33332 2222 12233344455
Q ss_pred HHHHHHhhcccC-Cc-cHHHHHH-HHHHHhcCCchhHHHHHHHHHHHhhcCC
Q 048799 242 QAEKVASGIPSE-IT-NVVVWRT-LLGACSFHGNVEMGERVTRKILEMERGY 290 (331)
Q Consensus 242 ~A~~~~~~~~~~-~p-~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 290 (331)
.++.+.+-+... .. ....|.. =...+.+.|+.++|...|+.+..+.++.
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 555555555444 11 1222222 2344567777777777777777765543
No 474
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=54.81 E-value=1.2e+02 Score=26.46 Aligned_cols=45 Identities=11% Similarity=-0.040 Sum_probs=24.3
Q ss_pred chhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 048799 99 DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS 147 (331)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 147 (331)
.+++-+++++.+.+.|-. | .....++.|.+.+++++|...+++-.
T Consensus 69 ~~~e~i~lL~~l~~~g~a--d--~lp~TIDSyTR~n~y~~A~~~l~~s~ 113 (480)
T TIGR01503 69 LLDEHIELLRTLQEEGGA--D--FLPSTIDAYTRQNRYDEAAVGIKESI 113 (480)
T ss_pred cHHHHHHHHHHHHHccCC--C--ccceeeecccccccHHHHHHHHHhhh
Confidence 345555555555555421 1 22344566666777777666666543
No 475
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=54.58 E-value=1.3e+02 Score=27.72 Aligned_cols=75 Identities=13% Similarity=0.102 Sum_probs=48.2
Q ss_pred HHHHHHhhcCchhHHHHHHhhhhhcC--CCcchhHHHHHHHHHHHhcCCHh------HHHHHHHHhhhcCCcHHHHHHHH
Q 048799 89 AVFPAIWQNGDVRNCQLIHGYGEKRG--FNAFHIHVSNCLIDTYAKCGCIF------SALKLFEDISVERKNLVSWTSII 160 (331)
Q Consensus 89 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~l~ 160 (331)
.++.+|...|++-.+.++++-.+... ... -...+|..++...+.|.++ .|.+.+++.. .+.|..||..++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~-~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~-ln~d~~t~all~ 110 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKI-LLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR-LNGDSLTYALLC 110 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCee-ehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh-cCCcchHHHHHH
Confidence 67888888888888888888776543 222 3456677777777777643 3444444442 245667777777
Q ss_pred HHHHc
Q 048799 161 SGFAM 165 (331)
Q Consensus 161 ~~~~~ 165 (331)
.+-.+
T Consensus 111 ~~sln 115 (1117)
T COG5108 111 QASLN 115 (1117)
T ss_pred HhhcC
Confidence 66544
No 476
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=54.09 E-value=1.2e+02 Score=24.89 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=17.3
Q ss_pred HHHHHHHhccCCCCchHHHHHHHH-HHhhcC-chhHHHHHHhhhh
Q 048799 69 ALFRRMVACEYTEPSEITILAVFP-AIWQNG-DVRNCQLIHGYGE 111 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~-~~~~a~~~~~~~~ 111 (331)
.++..+.-.+|..| ...++.|.+ .+.+.| -..-+.++|+..+
T Consensus 151 A~~Tal~l~nGt~~-~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~ 194 (412)
T KOG2297|consen 151 AMLTALLLSNGTLP-ATVLQSLLNDNLVKEGIALSFAVKLFKEWL 194 (412)
T ss_pred HHHHHHHHhCCCCC-HHHHHHHHHhhHHHHhHHHHHHHHHHHHHH
Confidence 34444434445433 333333332 333333 2233455555444
No 477
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=53.66 E-value=81 Score=22.61 Aligned_cols=80 Identities=13% Similarity=0.226 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhhcC-------CcHHHHHHHHHHHHccCC-hHHHHHHHHHHHhccCCCCHHHHHH
Q 048799 122 VSNCLIDTYAKCGCIFSALKLFEDISVER-------KNLVSWTSIISGFAMHGM-GKEAVENFERMQKVVLKPNRVTFLS 193 (331)
Q Consensus 122 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ 193 (331)
..+.++......+.+.....+++.+.... .+...|..++.+..+..- ---+..+|.-|.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 44566666666677777777766663322 234567777777765555 3455667777777667777778888
Q ss_pred HHHHHhcc
Q 048799 194 VLNACSHG 201 (331)
Q Consensus 194 l~~~~~~~ 201 (331)
++.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 88776553
No 478
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=53.36 E-value=82 Score=22.59 Aligned_cols=75 Identities=15% Similarity=0.154 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC---------CCchhHHHHHHHHHhcCC-hhHHHHHHHHHHhccCCCCchHHHHH
Q 048799 20 WNVMITGLVKWGELEYARSLFEEMPC---------RNVVSWTGIIDGYTRMNR-SNGALALFRRMVACEYTEPSEITILA 89 (331)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~ 89 (331)
.+.++......+++.-.+.+++.+.. .+...|+.++.+..+..- ---+..+|.-+ ++.+.++++.-|..
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L-k~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL-KKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH-HHcCCCCCHHHHHH
Confidence 34455555555555555555555431 233345555555533333 12234444444 33444555555555
Q ss_pred HHHHHh
Q 048799 90 VFPAIW 95 (331)
Q Consensus 90 l~~~~~ 95 (331)
++.++.
T Consensus 121 li~~~l 126 (145)
T PF13762_consen 121 LIKAAL 126 (145)
T ss_pred HHHHHH
Confidence 555443
No 479
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=52.95 E-value=63 Score=21.60 Aligned_cols=22 Identities=14% Similarity=0.282 Sum_probs=12.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 048799 53 GIIDGYTRMNRSNGALALFRRM 74 (331)
Q Consensus 53 ~l~~~~~~~~~~~~a~~~~~~~ 74 (331)
.++..|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3445566666677766666665
No 480
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=52.86 E-value=1.4e+02 Score=25.06 Aligned_cols=168 Identities=11% Similarity=0.114 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHc---CCHHHHHHHHhhCCCCCchhHH-----HHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHH
Q 048799 18 VTWNVMITGLVKW---GELEYARSLFEEMPCRNVVSWT-----GIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILA 89 (331)
Q Consensus 18 ~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 89 (331)
..+++++..-... ..++.|..+|..=. ....|. -+.+.+++.++-+.+..+-+.+ .. -|... ...
T Consensus 130 A~fhA~v~~~L~~p~S~yye~a~~Ylsg~~--~~~~WQ~lGLQGIAD~~aRl~~~~~~~~l~~al-~~---lP~~v-l~a 202 (340)
T PF12069_consen 130 AMFHAQVRAQLGQPASQYYEHAQAYLSGQL--GWDNWQTLGLQGIADICARLDQEDNAQLLRKAL-PH---LPPEV-LYA 202 (340)
T ss_pred HHHHHHHHHHcCCCcchhHHHHHHHHcCCc--chhHHHHhhhhHHHHHHHHhcccchHHHHHHHH-hh---CChHH-HHH
Confidence 4688888765443 35777888775432 133343 4567788888887766666555 31 23333 334
Q ss_pred HHHHHhhcCch-hHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC--CcHHHHHHHH-HHHHc
Q 048799 90 VFPAIWQNGDV-RNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER--KNLVSWTSII-SGFAM 165 (331)
Q Consensus 90 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~-~~~~~ 165 (331)
+..++....-. .-+..+.+.+... + |......++++.............+....... .+......+. ++...
T Consensus 203 L~~~LEh~~l~~~l~~~l~~~~~~~---~-d~~~~~a~lRAls~~~~~~~~~~~i~~~L~~~~~~~~e~Li~IAgR~W~~ 278 (340)
T PF12069_consen 203 LCGCLEHQPLPDKLAEALLERLEQA---P-DLELLSALLRALSSAPASDLVAILIDALLQSPRLCHPEVLIAIAGRCWQW 278 (340)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHcC---C-CHHHHHHHHHHHcCCCchhHHHHHHHHHhcCcccCChHHHHHHHhcCchh
Confidence 44444333322 2334445554444 4 77777888888888776666666566665442 2333322222 22333
Q ss_pred cCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHh
Q 048799 166 HGMGKEAVENFERMQKVVLKPNRVTFLSVLNACS 199 (331)
Q Consensus 166 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 199 (331)
..+.+.+..+++++-.. +|...|+.+..-..
T Consensus 279 L~d~~~l~~fle~LA~~---~~~~lF~qlfaDLv 309 (340)
T PF12069_consen 279 LKDPQLLRLFLERLAQQ---DDQALFNQLFADLV 309 (340)
T ss_pred cCCHHHHHHHHHHHHcc---cHHHHHHHHHHHHH
Confidence 34566666666666542 33555655554443
No 481
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=52.35 E-value=1.5e+02 Score=25.36 Aligned_cols=52 Identities=17% Similarity=0.045 Sum_probs=27.7
Q ss_pred HHHccCChHHHHHHHHHHHhccCCCCHHHHH----HHHHHHh--ccCChHHHHHHHHH
Q 048799 162 GFAMHGMGKEAVENFERMQKVVLKPNRVTFL----SVLNACS--HGGLVEEGLKFFDK 213 (331)
Q Consensus 162 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~----~l~~~~~--~~~~~~~a~~~~~~ 213 (331)
.+.+.+++..|.++|+++......|....+. .+..+|. ..-++++|.+.++.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4556677777777777777655444433322 2223332 13445566666654
No 482
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=52.35 E-value=18 Score=29.43 Aligned_cols=54 Identities=9% Similarity=0.116 Sum_probs=40.0
Q ss_pred hccCChHHHHHHHHHHHHhcCCCC-cHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc
Q 048799 199 SHGGLVEEGLKFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255 (331)
Q Consensus 199 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 255 (331)
.+.|+.++|..+|+.+... .| ++.....+....-..+++-+|-++|-++....|
T Consensus 127 ~~~Gk~ekA~~lfeHAlal---aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALAL---APTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HhccchHHHHHHHHHHHhc---CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 4789999999999998853 44 556666666655566778888888888776633
No 483
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=51.61 E-value=55 Score=20.10 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=20.4
Q ss_pred CHHHHHHHHhhCC---CCCchhHHHHHHHHHh
Q 048799 32 ELEYARSLFEEMP---CRNVVSWTGIIDGYTR 60 (331)
Q Consensus 32 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 60 (331)
+.+.|..++..++ ++++..||++...+.+
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~R 43 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDR 43 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHH
Confidence 5567778887776 3567788887776544
No 484
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=50.83 E-value=2.5e+02 Score=27.42 Aligned_cols=180 Identities=14% Similarity=0.089 Sum_probs=0.0
Q ss_pred hHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc------CCcHHHHHHHHHHHHccCChHHHHH
Q 048799 101 RNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE------RKNLVSWTSIISGFAMHGMGKEAVE 174 (331)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~ 174 (331)
+.+.++|+.+.+.-+.- -+.....+-...-+.....+-.+-.+++.+. ..|.......+.. +...-.+|..
T Consensus 1092 e~~~k~~~~l~s~ypd~-lpll~~~l~kl~~~sD~~kE~~~ki~eIl~~A~~Vi~~~D~eaL~~y~~~--k~D~r~da~k 1168 (1304)
T KOG1114|consen 1092 EEAEKIYNYLKSSYPDY-LPLLEVRLAKLMQKSDAVKETNKKIEEILSAADSVIQEIDTEALARYYAL--KEDTRPDAVK 1168 (1304)
T ss_pred HHHHHHHHHHHHhCccc-chHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhc--ccCCcchHHH
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-
Q 048799 175 NFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE- 253 (331)
Q Consensus 175 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 253 (331)
+-.+|.... ..++.++++.|..-.-.+.++--.+. |.. -.....+.-.+.|.++...
T Consensus 1169 lk~~me~qk--------~tli~AL~kKg~a~ak~e~l~g~~e~-----dae---------ee~s~ld~~~e~y~el~kw~ 1226 (1304)
T KOG1114|consen 1169 LKKKMEKQK--------DTLIDALVKKGEAFAKYEALKGHKEQ-----DAE---------EELSKLDSYNENYQELLKWL 1226 (1304)
T ss_pred HHHHHHHHH--------HHHHHHHHHhhhHHhhhhhhcccccc-----cch---------hhhhhhhhHHHHHHHHHHHh
Q ss_pred -CccHHHHHHHHHHHhcCCchhHHHHHHHHHHH--hhcCCCccHHHHHHHHhhhc
Q 048799 254 -ITNVVVWRTLLGACSFHGNVEMGERVTRKILE--MERGYGGDYVLMYNILAGVW 305 (331)
Q Consensus 254 -~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g 305 (331)
..|..++..-..-+...|++..+.+++.++.+ .+......+..++..+...|
T Consensus 1227 d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1227 DASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred hcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
No 485
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=50.69 E-value=1.1e+02 Score=23.11 Aligned_cols=19 Identities=11% Similarity=0.429 Sum_probs=9.9
Q ss_pred HHhccCChHHHHHHHHHHH
Q 048799 197 ACSHGGLVEEGLKFFDKMV 215 (331)
Q Consensus 197 ~~~~~~~~~~a~~~~~~~~ 215 (331)
.|.+.|.+++|.+++++..
T Consensus 120 VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHhcCchHHHHHHHHHHh
Confidence 3445555555555555544
No 486
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.61 E-value=1.8e+02 Score=25.78 Aligned_cols=89 Identities=13% Similarity=-0.034 Sum_probs=48.1
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCCchHH-------HHHHHH-HHhhcCchhHHHHHHhhhhhcCCCcchhHHH--HHH
Q 048799 57 GYTRMNRSNGALALFRRMVACEYTEPSEIT-------ILAVFP-AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVS--NCL 126 (331)
Q Consensus 57 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l 126 (331)
+-.-.|++.+|++-+..|..-..-.|.+.. ...++. -++..+.++.|..-|..+.+.-... +..++ ..+
T Consensus 332 c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-dl~a~~nlnl 410 (629)
T KOG2300|consen 332 CRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-DLQAFCNLNL 410 (629)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-HHHHHHHHhH
Confidence 334578899998888888432222333211 112222 2345666777777776666543332 33322 234
Q ss_pred HHHHHhcCCHhHHHHHHHHh
Q 048799 127 IDTYAKCGCIFSALKLFEDI 146 (331)
Q Consensus 127 ~~~~~~~g~~~~A~~~~~~~ 146 (331)
...|.+.|+-+.-.++++.+
T Consensus 411 Ai~YL~~~~~ed~y~~ld~i 430 (629)
T KOG2300|consen 411 AISYLRIGDAEDLYKALDLI 430 (629)
T ss_pred HHHHHHhccHHHHHHHHHhc
Confidence 55666666666666666555
No 487
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=49.66 E-value=1.1e+02 Score=23.17 Aligned_cols=24 Identities=0% Similarity=0.144 Sum_probs=15.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHhc
Q 048799 159 IISGFAMHGMGKEAVENFERMQKV 182 (331)
Q Consensus 159 l~~~~~~~~~~~~a~~~~~~m~~~ 182 (331)
++-.|.+.-+|.+..++++.|.+.
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666777777777776653
No 488
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.59 E-value=2.3e+02 Score=26.75 Aligned_cols=148 Identities=10% Similarity=-0.006 Sum_probs=87.1
Q ss_pred HHHHHHcCCHHHHHHHHhhCCC--C---CchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcC
Q 048799 24 ITGLVKWGELEYARSLFEEMPC--R---NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNG 98 (331)
Q Consensus 24 ~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 98 (331)
++-+.+.+.+++|+++-+.... + -...+...|..+...|++++|-...-.| ..-+..-|...+..+...+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m-----~gn~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKM-----LGNNAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHH-----hcchHHHHHHHHHHhcccc
Confidence 4446778889999998887663 2 2246777888888889999998888888 3345556666666665555
Q ss_pred chhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHh------------------hhcCCcHHHHHHHH
Q 048799 99 DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI------------------SVERKNLVSWTSII 160 (331)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------------~~~~~~~~~~~~l~ 160 (331)
+......+ +.. |+...++.+|..++..+.. .+...-.++..+- .+...+...-..|+
T Consensus 438 ~l~~Ia~~---lPt-~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La 512 (846)
T KOG2066|consen 438 QLTDIAPY---LPT-GPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLA 512 (846)
T ss_pred ccchhhcc---CCC-CCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHH
Confidence 54433222 222 2221255666666666555 2222211111111 00111222334477
Q ss_pred HHHHccCChHHHHHHHHHHHh
Q 048799 161 SGFAMHGMGKEAVENFERMQK 181 (331)
Q Consensus 161 ~~~~~~~~~~~a~~~~~~m~~ 181 (331)
..|...+++..|++++-.+++
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHccChHHHHHHHHhccC
Confidence 888899999999998876654
No 489
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=49.06 E-value=2.4e+02 Score=26.71 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 048799 121 HVSNCLIDTYAKCGCIFSALKLFEDIS 147 (331)
Q Consensus 121 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 147 (331)
.+...++-.|....+++...++.+.+.
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk 228 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLK 228 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHH
Confidence 444455555666666666666665554
No 490
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=49.04 E-value=1.3e+02 Score=23.62 Aligned_cols=22 Identities=0% Similarity=0.111 Sum_probs=17.9
Q ss_pred cCCchhHHHHHHHHHHHhhcCC
Q 048799 269 FHGNVEMGERVTRKILEMERGY 290 (331)
Q Consensus 269 ~~g~~~~a~~~~~~~~~~~~~~ 290 (331)
..++...|..+++++.+++|..
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCC
Confidence 4457788999999999988875
No 491
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=48.67 E-value=1.1e+02 Score=22.62 Aligned_cols=68 Identities=10% Similarity=-0.017 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcC
Q 048799 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134 (331)
Q Consensus 65 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 134 (331)
+.-.+-+.++++..|..++..-. .++..+...++.-.|.++++.+.+.++.. +..+...-+..+.+.|
T Consensus 7 ~~~~~~~~~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~i-s~aTVYRtL~~L~e~G 74 (169)
T PRK11639 7 QELLAQAEKLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQA-KPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCC-CcchHHHHHHHHHHCC
No 492
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.65 E-value=77 Score=20.94 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=10.9
Q ss_pred HHhcCCHHHHHHHHhhcccCCccHH
Q 048799 234 LGRAGRLEQAEKVASGIPSEITNVV 258 (331)
Q Consensus 234 ~~~~g~~~~A~~~~~~~~~~~p~~~ 258 (331)
|.+.|+.+.|.+-|+.-....|...
T Consensus 82 ys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 82 YSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred HhhcCChHHHHHHHHHhhhhCccch
Confidence 4444444444444444333333333
No 493
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=48.16 E-value=57 Score=19.28 Aligned_cols=6 Identities=50% Similarity=0.412 Sum_probs=2.1
Q ss_pred HHHHHH
Q 048799 171 EAVENF 176 (331)
Q Consensus 171 ~a~~~~ 176 (331)
+|-+++
T Consensus 17 EaHEvl 22 (62)
T PF03745_consen 17 EAHEVL 22 (62)
T ss_dssp HHHHHH
T ss_pred HhHHHH
Confidence 333333
No 494
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.12 E-value=2.2e+02 Score=25.93 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=23.1
Q ss_pred HhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHH-hcCCHHHHHHHHhhc
Q 048799 198 CSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG-RAGRLEQAEKVASGI 250 (331)
Q Consensus 198 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 250 (331)
..+.|-+..|.++-+.+.+- ...-|+.....+|+.|+ ++.++.=.+++++..
T Consensus 352 l~~RGC~rTA~E~cKlllsL-dp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 352 LAQRGCWRTALEWCKLLLSL-DPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHhcCChHHHHHHHHHHhhc-CCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34455555555555555432 21113444444444443 344444444444443
No 495
>PRK13342 recombination factor protein RarA; Reviewed
Probab=46.61 E-value=2e+02 Score=25.03 Aligned_cols=33 Identities=18% Similarity=0.039 Sum_probs=19.2
Q ss_pred cCChHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 048799 166 HGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198 (331)
Q Consensus 166 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 198 (331)
.++.+.|+.++..|.+.|..|....-..++.++
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 356677777777777666655544444444333
No 496
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=46.38 E-value=1.8e+02 Score=24.41 Aligned_cols=60 Identities=10% Similarity=-0.072 Sum_probs=26.5
Q ss_pred HHHhhcCchhHHHHHHhhhhhcCCCcc--hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 048799 92 PAIWQNGDVRNCQLIHGYGEKRGFNAF--HIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151 (331)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 151 (331)
+-|.+.+++..|...|.+.++....-+ +...|+.-..+-...|++..|+.=........|
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P 150 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKP 150 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 344455555555555555444322110 233444444444444555555544444444433
No 497
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=45.90 E-value=2.3e+02 Score=25.57 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=10.8
Q ss_pred HHHHHHhcCCHhHHHHHHHHh
Q 048799 126 LIDTYAKCGCIFSALKLFEDI 146 (331)
Q Consensus 126 l~~~~~~~g~~~~A~~~~~~~ 146 (331)
|+.-|.+.+++++|..++..|
T Consensus 414 L~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhC
Confidence 444455555555555555544
No 498
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=45.71 E-value=62 Score=21.81 Aligned_cols=12 Identities=42% Similarity=0.567 Sum_probs=4.7
Q ss_pred HHHHHHHHHHhc
Q 048799 171 EAVENFERMQKV 182 (331)
Q Consensus 171 ~a~~~~~~m~~~ 182 (331)
.|.++++.+.+.
T Consensus 18 sa~ei~~~l~~~ 29 (116)
T cd07153 18 TAEEIYERLRKK 29 (116)
T ss_pred CHHHHHHHHHhc
Confidence 333444444333
No 499
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=45.35 E-value=1.7e+02 Score=24.09 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=15.4
Q ss_pred cHHHHHHHHHHHhcCCchhHH
Q 048799 256 NVVVWRTLLGACSFHGNVEMG 276 (331)
Q Consensus 256 ~~~~~~~l~~~~~~~g~~~~a 276 (331)
...+|.-|+.+++..|+.+..
T Consensus 320 hlK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 320 HLKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHHhhhHHHHHHhcCChHHHH
Confidence 456677888888888876643
No 500
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=45.10 E-value=1.4e+02 Score=27.67 Aligned_cols=70 Identities=11% Similarity=0.058 Sum_probs=50.7
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCC------CchhHHHHHHHHHhcCChh------HHHHHHHHHHhccCCCCchHHHHH
Q 048799 22 VMITGLVKWGELEYARSLFEEMPCR------NVVSWTGIIDGYTRMNRSN------GALALFRRMVACEYTEPSEITILA 89 (331)
Q Consensus 22 ~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~~ 89 (331)
+|+.+|...|++-++.++++..... =...+|..++...+.|.++ .|.++++.. .+.-|..||..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a----~ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA----RLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----hcCCcchHHHH
Confidence 7999999999999999999987632 2347888888899999764 344444443 35567777777
Q ss_pred HHHHHh
Q 048799 90 VFPAIW 95 (331)
Q Consensus 90 l~~~~~ 95 (331)
+..+..
T Consensus 109 l~~~sl 114 (1117)
T COG5108 109 LCQASL 114 (1117)
T ss_pred HHHhhc
Confidence 666543
Done!