Query 048799
Match_columns 331
No_of_seqs 505 out of 1411
Neff 11.8
Searched_HMMs 29240
Date Mon Mar 25 23:32:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048799.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048799hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.9E-33 1E-37 248.0 27.7 311 2-320 133-504 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.2E-33 3.9E-38 250.6 23.5 315 2-321 100-471 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.7E-32 5.7E-37 235.1 23.2 185 49-236 27-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 7E-32 2.4E-36 231.2 22.1 202 66-270 8-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-29 3.7E-34 213.4 31.4 298 16-320 66-368 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 6.9E-29 2.4E-33 208.5 31.8 313 1-320 14-334 (388)
7 2y4t_A DNAJ homolog subfamily 100.0 6.9E-27 2.4E-31 200.1 32.5 308 7-321 13-359 (450)
8 2y4t_A DNAJ homolog subfamily 100.0 4.1E-26 1.4E-30 195.3 30.7 291 1-300 41-372 (450)
9 3ieg_A DNAJ homolog subfamily 99.9 4E-24 1.4E-28 177.2 32.6 301 16-321 2-336 (359)
10 2gw1_A Mitochondrial precursor 99.9 5E-25 1.7E-29 191.6 27.6 318 1-321 21-445 (514)
11 2gw1_A Mitochondrial precursor 99.9 7.2E-24 2.5E-28 184.3 29.5 301 16-322 5-403 (514)
12 3ieg_A DNAJ homolog subfamily 99.9 1.9E-23 6.4E-28 173.2 29.4 297 1-305 18-354 (359)
13 3hym_B Cell division cycle pro 99.9 1.9E-23 6.4E-28 171.3 26.7 289 15-308 20-322 (330)
14 1fch_A Peroxisomal targeting s 99.9 7.4E-24 2.5E-28 176.5 24.5 285 26-316 34-355 (368)
15 3fp2_A TPR repeat-containing p 99.9 1.6E-23 5.4E-28 183.2 27.6 313 1-320 40-491 (537)
16 4eqf_A PEX5-related protein; a 99.9 2.3E-23 7.9E-28 173.4 23.5 264 47-316 64-352 (365)
17 3hym_B Cell division cycle pro 99.9 1.8E-22 6E-27 165.4 27.2 269 46-321 20-300 (330)
18 3fp2_A TPR repeat-containing p 99.9 2.3E-22 7.7E-27 175.9 27.0 300 16-322 24-409 (537)
19 3mkr_A Coatomer subunit epsilo 99.9 2.5E-21 8.4E-26 155.5 28.7 272 24-312 6-286 (291)
20 1fch_A Peroxisomal targeting s 99.9 2.2E-22 7.5E-27 167.5 19.8 282 30-322 14-316 (368)
21 3cv0_A Peroxisome targeting si 99.9 1.4E-21 4.8E-26 159.9 22.7 266 47-319 20-314 (327)
22 4eqf_A PEX5-related protein; a 99.9 2.1E-21 7E-26 161.6 21.7 236 83-322 64-312 (365)
23 3mkr_A Coatomer subunit epsilo 99.9 8.8E-21 3E-25 152.3 23.8 250 55-321 6-265 (291)
24 1b89_A Protein (clathrin heavy 99.9 2.9E-22 9.9E-27 164.9 12.5 279 1-313 18-304 (449)
25 3cv0_A Peroxisome targeting si 99.9 1E-20 3.6E-25 154.7 21.0 267 16-289 20-318 (327)
26 1b89_A Protein (clathrin heavy 99.9 3.2E-22 1.1E-26 164.6 8.7 252 28-316 14-265 (449)
27 4g1t_A Interferon-induced prot 99.9 3.3E-19 1.1E-23 153.4 27.7 309 16-331 93-470 (472)
28 3uq3_A Heat shock protein STI1 99.8 1.7E-19 5.8E-24 142.3 20.2 226 49-287 6-237 (258)
29 3uq3_A Heat shock protein STI1 99.8 2.6E-19 9E-24 141.2 20.9 224 84-321 5-237 (258)
30 1xnf_A Lipoprotein NLPI; TPR, 99.8 2.8E-19 9.4E-24 142.6 20.5 246 59-314 16-269 (275)
31 2pl2_A Hypothetical conserved 99.8 7.8E-19 2.7E-23 134.9 19.0 197 119-318 4-212 (217)
32 3u4t_A TPR repeat-containing p 99.8 2.3E-18 7.9E-23 137.1 22.1 249 51-304 6-268 (272)
33 2xm6_A Protein corresponding t 99.8 5.6E-17 1.9E-21 140.2 32.5 300 3-321 60-433 (490)
34 2xm6_A Protein corresponding t 99.8 5.8E-17 2E-21 140.1 32.5 271 3-290 132-436 (490)
35 2ooe_A Cleavage stimulation fa 99.8 2.3E-17 7.8E-22 144.0 29.8 316 2-321 28-455 (530)
36 2pl2_A Hypothetical conserved 99.8 2.9E-18 9.7E-23 131.8 20.3 195 83-283 4-211 (217)
37 3spa_A Mtrpol, DNA-directed RN 99.8 4E-20 1.4E-24 164.2 10.5 152 119-271 126-286 (1134)
38 2ho1_A Type 4 fimbrial biogene 99.8 2.5E-17 8.6E-22 129.5 24.2 205 84-292 37-244 (252)
39 2h6f_A Protein farnesyltransfe 99.8 1.1E-17 3.9E-22 138.7 22.9 249 48-304 97-366 (382)
40 2q7f_A YRRB protein; TPR, prot 99.8 2.6E-18 9E-23 134.3 18.1 215 82-301 21-237 (243)
41 3sf4_A G-protein-signaling mod 99.8 5.4E-18 1.8E-22 142.7 20.6 296 14-309 6-365 (406)
42 3u4t_A TPR repeat-containing p 99.8 3.6E-17 1.2E-21 130.1 24.0 247 17-267 3-265 (272)
43 2vq2_A PILW, putative fimbrial 99.8 4.7E-17 1.6E-21 125.5 23.8 207 83-293 7-218 (225)
44 3sf4_A G-protein-signaling mod 99.8 8.2E-18 2.8E-22 141.6 21.0 274 47-320 8-336 (406)
45 1ouv_A Conserved hypothetical 99.8 2.7E-16 9.3E-21 125.2 27.7 227 47-290 5-255 (273)
46 4a1s_A PINS, partner of inscut 99.8 9.7E-18 3.3E-22 141.6 20.1 269 51-319 51-371 (411)
47 1ouv_A Conserved hypothetical 99.8 6.5E-16 2.2E-20 123.0 29.3 223 84-321 6-252 (273)
48 3ro2_A PINS homolog, G-protein 99.8 2.3E-17 7.9E-22 135.0 20.6 268 53-320 10-332 (338)
49 2vq2_A PILW, putative fimbrial 99.8 7.1E-17 2.4E-21 124.5 22.0 203 117-321 5-212 (225)
50 2h6f_A Protein farnesyltransfe 99.8 2.6E-17 8.8E-22 136.5 20.4 231 84-320 97-348 (382)
51 1xnf_A Lipoprotein NLPI; TPR, 99.8 6.8E-18 2.3E-22 134.5 15.8 242 28-280 16-269 (275)
52 2ooe_A Cleavage stimulation fa 99.8 5.4E-16 1.8E-20 135.3 29.2 213 102-321 256-493 (530)
53 4g1t_A Interferon-induced prot 99.8 2.4E-16 8.3E-21 135.5 26.7 300 16-320 50-401 (472)
54 2ho1_A Type 4 fimbrial biogene 99.8 6.9E-17 2.3E-21 127.0 20.4 200 120-321 37-239 (252)
55 3spa_A Mtrpol, DNA-directed RN 99.8 2.1E-19 7.1E-24 159.7 6.4 150 16-167 126-286 (1134)
56 2q7f_A YRRB protein; TPR, prot 99.8 3.1E-17 1.1E-21 128.2 17.7 200 119-321 22-223 (243)
57 4a1s_A PINS, partner of inscut 99.8 9E-17 3.1E-21 135.7 21.3 272 17-288 48-374 (411)
58 4abn_A Tetratricopeptide repea 99.8 1.4E-17 4.9E-22 142.9 15.8 213 99-317 83-318 (474)
59 3ro2_A PINS homolog, G-protein 99.7 1.2E-16 4.1E-21 130.8 19.1 273 17-289 5-335 (338)
60 3ulq_A Response regulator aspa 99.7 4.9E-17 1.7E-21 136.1 17.0 292 26-321 21-369 (383)
61 1xi4_A Clathrin heavy chain; a 99.7 3.6E-15 1.2E-19 137.0 29.0 240 29-304 1088-1327(1630)
62 3ulq_A Response regulator aspa 99.7 3.8E-16 1.3E-20 130.6 20.3 235 54-288 109-370 (383)
63 2ond_A Cleavage stimulation fa 99.7 1.4E-14 4.8E-19 117.4 26.8 222 65-293 33-277 (308)
64 3vtx_A MAMA; tetratricopeptide 99.7 1.3E-15 4.3E-20 113.8 18.9 169 119-290 4-174 (184)
65 3nf1_A KLC 1, kinesin light ch 99.7 8.8E-17 3E-21 130.3 13.5 168 49-216 28-223 (311)
66 3nf1_A KLC 1, kinesin light ch 99.7 1.5E-16 5.1E-21 129.0 14.8 252 16-289 26-310 (311)
67 2ond_A Cleavage stimulation fa 99.7 1.1E-14 3.6E-19 118.1 24.4 216 101-322 33-272 (308)
68 1xi4_A Clathrin heavy chain; a 99.7 2.2E-14 7.4E-19 132.0 27.8 277 2-312 1092-1376(1630)
69 3vtx_A MAMA; tetratricopeptide 99.7 2.1E-15 7.1E-20 112.6 17.7 168 151-321 3-171 (184)
70 3e4b_A ALGK; tetratricopeptide 99.7 9.5E-15 3.3E-19 124.6 23.8 190 119-321 175-388 (452)
71 3q15_A PSP28, response regulat 99.7 3.5E-15 1.2E-19 124.5 20.8 305 14-320 7-365 (378)
72 4abn_A Tetratricopeptide repea 99.7 4.9E-15 1.7E-19 127.2 19.5 214 63-283 83-318 (474)
73 3e4b_A ALGK; tetratricopeptide 99.7 1.2E-15 4E-20 130.2 14.6 300 2-322 19-353 (452)
74 1hz4_A MALT regulatory protein 99.7 3.2E-13 1.1E-17 112.4 28.9 292 20-319 17-348 (373)
75 3q15_A PSP28, response regulat 99.7 9.6E-14 3.3E-18 115.9 25.1 235 52-286 105-365 (378)
76 1hz4_A MALT regulatory protein 99.6 4.2E-13 1.4E-17 111.7 26.2 269 50-319 16-321 (373)
77 4i17_A Hypothetical protein; T 99.6 7E-14 2.4E-18 108.1 19.9 208 81-300 4-223 (228)
78 3as5_A MAMA; tetratricopeptide 99.6 8.1E-14 2.8E-18 103.7 19.5 170 120-292 8-179 (186)
79 4gyw_A UDP-N-acetylglucosamine 99.6 3.3E-14 1.1E-18 127.0 18.8 170 117-289 6-177 (723)
80 3as5_A MAMA; tetratricopeptide 99.6 2E-14 7E-19 107.0 14.4 168 153-323 8-176 (186)
81 4gyw_A UDP-N-acetylglucosamine 99.6 7.2E-14 2.4E-18 124.8 19.3 166 82-253 7-174 (723)
82 3edt_B KLC 2, kinesin light ch 99.6 2.3E-13 8E-18 108.3 19.3 227 59-285 12-280 (283)
83 4i17_A Hypothetical protein; T 99.6 1.2E-13 3.9E-18 106.9 15.6 192 119-321 6-210 (228)
84 3mv2_B Coatomer subunit epsilo 99.5 1E-11 3.6E-16 98.2 24.5 242 27-292 23-288 (310)
85 3edt_B KLC 2, kinesin light ch 99.5 4.7E-13 1.6E-17 106.6 16.9 203 48-252 43-280 (283)
86 3qky_A Outer membrane assembly 99.5 6.7E-13 2.3E-17 104.8 17.4 208 83-311 14-252 (261)
87 1qqe_A Vesicular transport pro 99.5 8.2E-13 2.8E-17 106.1 17.5 211 63-290 32-273 (292)
88 3mv2_B Coatomer subunit epsilo 99.5 1.3E-11 4.4E-16 97.7 23.2 243 55-321 20-283 (310)
89 1qqe_A Vesicular transport pro 99.5 4.4E-12 1.5E-16 101.8 18.9 210 32-255 32-271 (292)
90 3qky_A Outer membrane assembly 99.5 6.7E-12 2.3E-16 99.0 17.7 171 47-217 14-224 (261)
91 2pzi_A Probable serine/threoni 99.4 2.5E-11 8.5E-16 108.8 20.8 172 95-272 402-583 (681)
92 3urz_A Uncharacterized protein 99.4 1.4E-11 4.9E-16 93.6 16.4 129 159-290 60-190 (208)
93 4e6h_A MRNA 3'-END-processing 99.4 6.6E-10 2.3E-14 98.4 29.1 168 153-321 343-534 (679)
94 3urz_A Uncharacterized protein 99.4 3.2E-11 1.1E-15 91.6 17.9 135 124-262 58-195 (208)
95 2pzi_A Probable serine/threoni 99.4 2E-12 6.9E-17 115.8 12.2 172 131-306 402-583 (681)
96 4ga2_A E3 SUMO-protein ligase 99.4 9.5E-13 3.3E-17 94.5 7.7 143 160-306 4-149 (150)
97 2yhc_A BAMD, UPF0169 lipoprote 99.4 4.2E-11 1.4E-15 92.2 17.4 203 84-322 4-215 (225)
98 2fo7_A Synthetic consensus TPR 99.4 3.9E-11 1.3E-15 84.0 15.7 129 157-288 5-134 (136)
99 2fo7_A Synthetic consensus TPR 99.4 1.2E-11 4.1E-16 86.6 13.0 130 190-321 3-133 (136)
100 2yhc_A BAMD, UPF0169 lipoprote 99.4 5.2E-11 1.8E-15 91.7 17.5 164 121-321 5-177 (225)
101 3rjv_A Putative SEL1 repeat pr 99.3 1.8E-10 6.2E-15 87.7 18.0 175 4-183 4-198 (212)
102 3qou_A Protein YBBN; thioredox 99.3 2.1E-10 7.2E-15 91.7 18.8 163 119-285 116-283 (287)
103 2ifu_A Gamma-SNAP; membrane fu 99.3 9.3E-11 3.2E-15 94.8 16.8 202 60-290 3-227 (307)
104 2r5s_A Uncharacterized protein 99.3 4.1E-11 1.4E-15 88.5 13.5 157 124-284 10-171 (176)
105 2vsy_A XCC0866; transferase, g 99.3 4.8E-11 1.6E-15 105.0 16.1 151 98-253 3-157 (568)
106 2r5s_A Uncharacterized protein 99.3 7.9E-11 2.7E-15 86.9 14.9 156 20-180 9-171 (176)
107 3qou_A Protein YBBN; thioredox 99.3 7.4E-11 2.5E-15 94.4 15.7 175 38-216 107-283 (287)
108 3rjv_A Putative SEL1 repeat pr 99.3 4.2E-10 1.4E-14 85.7 18.8 175 102-286 4-197 (212)
109 4ga2_A E3 SUMO-protein ligase 99.3 3.5E-11 1.2E-15 86.3 12.0 142 92-238 5-148 (150)
110 2ifu_A Gamma-SNAP; membrane fu 99.3 3.6E-10 1.2E-14 91.3 18.9 225 29-278 3-253 (307)
111 3dra_A Protein farnesyltransfe 99.3 7.2E-09 2.5E-13 82.8 25.9 233 59-298 43-300 (306)
112 3dra_A Protein farnesyltransfe 99.3 1.7E-09 6E-14 86.3 21.4 220 95-319 43-286 (306)
113 2qfc_A PLCR protein; TPR, HTH, 99.3 3.2E-09 1.1E-13 85.1 23.0 211 68-286 31-266 (293)
114 4e6h_A MRNA 3'-END-processing 99.3 2.1E-09 7.2E-14 95.2 23.4 221 65-291 326-575 (679)
115 2vsy_A XCC0866; transferase, g 99.3 7.5E-11 2.5E-15 103.8 14.0 163 133-298 2-169 (568)
116 3gyz_A Chaperone protein IPGC; 99.2 5.9E-11 2E-15 84.8 10.0 95 225-319 37-132 (151)
117 3u3w_A Transcriptional activat 99.2 3.2E-09 1.1E-13 85.1 21.3 210 69-286 32-266 (293)
118 1hh8_A P67PHOX, NCF-2, neutrop 99.2 1E-09 3.5E-14 83.5 17.1 133 18-152 7-153 (213)
119 4gco_A Protein STI-1; structur 99.2 2.1E-10 7E-15 79.5 11.4 110 189-300 14-124 (126)
120 2uy1_A Cleavage stimulation fa 99.2 3.3E-08 1.1E-12 85.0 26.1 170 138-317 197-380 (493)
121 1hh8_A P67PHOX, NCF-2, neutrop 99.2 1.4E-09 4.8E-14 82.7 15.6 127 50-183 8-151 (213)
122 3u3w_A Transcriptional activat 99.2 3.6E-09 1.2E-13 84.8 18.6 164 156-319 78-265 (293)
123 4f3v_A ESX-1 secretion system 99.2 3.7E-10 1.3E-14 88.2 11.9 195 96-297 18-247 (282)
124 2c2l_A CHIP, carboxy terminus 99.2 1.1E-10 3.8E-15 93.0 8.9 192 83-285 3-198 (281)
125 2qfc_A PLCR protein; TPR, HTH, 99.1 5.4E-09 1.8E-13 83.8 18.4 166 86-251 77-264 (293)
126 1a17_A Serine/threonine protei 99.1 9.3E-10 3.2E-14 80.0 12.7 126 191-318 16-144 (166)
127 2lni_A Stress-induced-phosphop 99.1 1.2E-09 4.1E-14 76.1 12.4 118 187-306 15-133 (133)
128 4f3v_A ESX-1 secretion system 99.1 2.3E-09 7.8E-14 83.8 14.6 200 60-263 18-247 (282)
129 1na0_A Designed protein CTPR3; 99.1 1.4E-09 4.9E-14 74.7 12.2 116 188-305 9-125 (125)
130 2vyi_A SGTA protein; chaperone 99.1 1.6E-09 5.4E-14 75.2 12.5 118 188-307 12-130 (131)
131 4gco_A Protein STI-1; structur 99.1 3.4E-10 1.2E-14 78.4 8.7 102 220-321 8-111 (126)
132 2vgx_A Chaperone SYCD; alterna 99.1 1.8E-10 6.3E-15 82.2 7.3 117 174-294 8-126 (148)
133 2c2l_A CHIP, carboxy terminus 99.1 1.2E-08 4.2E-13 81.1 17.8 194 47-253 3-199 (281)
134 3gw4_A Uncharacterized protein 99.1 4.4E-09 1.5E-13 79.2 14.3 97 120-216 66-175 (203)
135 3gyz_A Chaperone protein IPGC; 99.1 2.9E-09 1E-13 75.9 12.4 98 119-217 35-133 (151)
136 3q7a_A Farnesyltransferase alp 99.1 2.7E-07 9.4E-12 74.5 24.8 230 58-294 64-340 (349)
137 1p5q_A FKBP52, FK506-binding p 99.1 1.9E-09 6.6E-14 88.1 12.6 94 224-317 196-291 (336)
138 3gw4_A Uncharacterized protein 99.0 1.5E-08 5E-13 76.3 16.2 118 96-215 4-134 (203)
139 2e2e_A Formate-dependent nitri 99.0 7.8E-10 2.7E-14 81.6 8.6 127 163-292 20-150 (177)
140 2vgx_A Chaperone SYCD; alterna 99.0 6.4E-09 2.2E-13 74.2 12.9 98 119-217 20-118 (148)
141 2uy1_A Cleavage stimulation fa 99.0 9.1E-08 3.1E-12 82.2 21.8 300 2-319 30-412 (493)
142 1p5q_A FKBP52, FK506-binding p 99.0 1.6E-09 5.5E-14 88.6 10.4 143 96-243 125-283 (336)
143 4b4t_Q 26S proteasome regulato 99.0 7.9E-07 2.7E-11 75.2 26.9 194 24-217 11-245 (434)
144 1a17_A Serine/threonine protei 99.0 2.7E-08 9.3E-13 72.1 15.3 91 124-215 17-108 (166)
145 3sz7_A HSC70 cochaperone (SGT) 99.0 1.3E-08 4.5E-13 73.9 13.0 110 187-298 10-120 (164)
146 2xcb_A PCRH, regulatory protei 99.0 3.2E-09 1.1E-13 75.2 9.5 107 188-296 18-125 (142)
147 2e2e_A Formate-dependent nitri 99.0 1.1E-08 3.7E-13 75.4 12.7 120 95-217 21-144 (177)
148 3dss_A Geranylgeranyl transfer 99.0 2.7E-07 9.1E-12 74.2 21.5 244 49-299 27-317 (331)
149 2xcb_A PCRH, regulatory protei 99.0 6.8E-09 2.3E-13 73.5 10.9 109 142-253 6-115 (142)
150 4gcn_A Protein STI-1; structur 99.0 1.5E-08 5.2E-13 70.1 12.2 93 87-181 11-111 (127)
151 3upv_A Heat shock protein STI1 99.0 8.7E-09 3E-13 71.2 11.0 97 189-287 5-102 (126)
152 2fbn_A 70 kDa peptidylprolyl i 99.0 7.1E-09 2.4E-13 77.9 11.3 175 125-320 9-186 (198)
153 3dss_A Geranylgeranyl transfer 99.0 8.5E-07 2.9E-11 71.3 23.7 221 96-321 41-305 (331)
154 3upv_A Heat shock protein STI1 99.0 2.8E-09 9.7E-14 73.7 8.3 99 223-321 3-102 (126)
155 2kck_A TPR repeat; tetratricop 99.0 3.2E-09 1.1E-13 71.4 8.4 98 224-321 6-107 (112)
156 2lni_A Stress-induced-phosphop 98.9 6.1E-08 2.1E-12 67.3 15.0 117 119-238 15-132 (133)
157 1na0_A Designed protein CTPR3; 98.9 8.3E-08 2.9E-12 65.6 15.3 96 120-216 9-105 (125)
158 1elw_A TPR1-domain of HOP; HOP 98.9 1.4E-08 4.9E-13 68.8 11.1 109 189-299 5-114 (118)
159 1hxi_A PEX5, peroxisome target 98.9 3.5E-09 1.2E-13 72.7 7.9 96 226-321 19-115 (121)
160 3q7a_A Farnesyltransferase alp 98.9 1.1E-07 3.8E-12 76.8 17.6 219 96-319 66-330 (349)
161 2vyi_A SGTA protein; chaperone 98.9 3.4E-08 1.2E-12 68.3 12.8 117 120-239 12-129 (131)
162 2fbn_A 70 kDa peptidylprolyl i 98.9 3.4E-09 1.2E-13 79.7 7.9 146 23-170 10-173 (198)
163 3q49_B STIP1 homology and U bo 98.9 2.2E-08 7.6E-13 70.1 11.5 102 186-289 7-109 (137)
164 4b4t_Q 26S proteasome regulato 98.9 1.3E-07 4.3E-12 80.2 18.3 163 123-285 58-244 (434)
165 3q49_B STIP1 homology and U bo 98.9 1.2E-08 4E-13 71.6 9.7 103 221-323 6-109 (137)
166 4gcn_A Protein STI-1; structur 98.9 7.9E-08 2.7E-12 66.4 13.7 108 119-229 7-121 (127)
167 2dba_A Smooth muscle cell asso 98.9 3.9E-08 1.3E-12 69.7 12.5 110 188-300 28-142 (148)
168 3sz7_A HSC70 cochaperone (SGT) 98.9 7.9E-09 2.7E-13 75.1 8.9 100 223-322 10-110 (164)
169 1elr_A TPR2A-domain of HOP; HO 98.8 4.7E-08 1.6E-12 67.6 10.9 91 89-181 9-107 (131)
170 1wao_1 Serine/threonine protei 98.8 2.3E-08 7.8E-13 85.7 10.8 120 194-315 12-134 (477)
171 1elr_A TPR2A-domain of HOP; HO 98.8 5.2E-08 1.8E-12 67.3 10.9 111 190-303 6-124 (131)
172 1elw_A TPR1-domain of HOP; HOP 98.8 2.3E-08 7.8E-13 67.8 8.7 99 223-321 3-102 (118)
173 2kck_A TPR repeat; tetratricop 98.8 8.5E-08 2.9E-12 64.2 11.2 25 123-147 43-67 (112)
174 2dba_A Smooth muscle cell asso 98.8 5.9E-08 2E-12 68.8 10.6 100 222-321 26-129 (148)
175 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 7.1E-08 2.4E-12 82.3 12.4 123 190-312 270-406 (457)
176 3ro3_A PINS homolog, G-protein 98.8 1.2E-07 4.1E-12 68.1 11.3 61 120-180 9-76 (164)
177 3k9i_A BH0479 protein; putativ 98.7 8.1E-09 2.8E-13 70.4 4.7 91 201-292 3-96 (117)
178 3rkv_A Putative peptidylprolyl 98.7 5.5E-08 1.9E-12 70.4 9.3 82 223-304 62-145 (162)
179 1hxi_A PEX5, peroxisome target 98.7 5.1E-08 1.8E-12 66.8 8.5 96 193-290 22-118 (121)
180 2if4_A ATFKBP42; FKBP-like, al 98.7 2.9E-08 1E-12 81.1 8.4 150 153-322 179-330 (338)
181 2xev_A YBGF; tetratricopeptide 98.7 2.1E-07 7.4E-12 64.2 11.8 97 194-292 8-111 (129)
182 2hr2_A Hypothetical protein; a 98.7 4.7E-08 1.6E-12 69.2 7.7 107 188-297 11-142 (159)
183 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 4.9E-08 1.7E-12 83.3 9.4 143 96-244 246-405 (457)
184 3ro3_A PINS homolog, G-protein 98.7 4.4E-07 1.5E-11 65.1 13.1 131 86-216 11-157 (164)
185 1ihg_A Cyclophilin 40; ppiase 98.7 1E-07 3.6E-12 78.8 10.8 122 191-312 226-362 (370)
186 1dce_A Protein (RAB geranylger 98.7 3.4E-06 1.1E-10 73.7 20.5 171 136-309 45-244 (567)
187 2if4_A ATFKBP42; FKBP-like, al 98.7 1.2E-07 4.1E-12 77.5 10.6 154 119-291 178-333 (338)
188 2xev_A YBGF; tetratricopeptide 98.7 5E-08 1.7E-12 67.5 7.2 95 227-321 5-106 (129)
189 3k9i_A BH0479 protein; putativ 98.6 2E-08 6.9E-13 68.4 4.2 86 236-321 2-91 (117)
190 2hr2_A Hypothetical protein; a 98.6 3.3E-07 1.1E-11 64.8 10.4 97 224-320 11-131 (159)
191 1wao_1 Serine/threonine protei 98.6 1.1E-06 3.7E-11 75.3 15.3 120 90-212 12-134 (477)
192 3rkv_A Putative peptidylprolyl 98.6 7.2E-07 2.5E-11 64.4 12.1 64 119-182 62-126 (162)
193 2l6j_A TPR repeat-containing p 98.6 2.2E-08 7.4E-13 67.3 3.3 95 223-317 3-104 (111)
194 3n71_A Histone lysine methyltr 98.5 3.3E-07 1.1E-11 78.3 9.7 125 197-321 318-465 (490)
195 1ihg_A Cyclophilin 40; ppiase 98.5 2.1E-06 7.3E-11 70.9 13.2 89 153-244 273-361 (370)
196 1na3_A Designed protein CTPR2; 98.5 8.3E-07 2.8E-11 56.9 8.0 83 223-305 8-91 (91)
197 3n71_A Histone lysine methyltr 98.4 3.6E-06 1.2E-10 71.9 12.9 59 121-179 352-419 (490)
198 1dce_A Protein (RAB geranylger 98.4 3E-05 1E-09 67.8 17.4 171 100-275 45-244 (567)
199 2l6j_A TPR repeat-containing p 98.3 4.3E-07 1.5E-11 60.8 4.1 25 123-147 41-65 (111)
200 2kat_A Uncharacterized protein 98.3 3.3E-06 1.1E-10 56.9 8.2 82 206-289 3-85 (115)
201 1zu2_A Mitochondrial import re 98.3 5E-07 1.7E-11 63.8 3.7 88 200-289 14-123 (158)
202 2kat_A Uncharacterized protein 98.3 2.5E-06 8.5E-11 57.5 7.2 80 242-321 3-83 (115)
203 3ma5_A Tetratricopeptide repea 98.3 2.9E-06 9.8E-11 55.7 7.1 67 223-289 6-73 (100)
204 1zu2_A Mitochondrial import re 98.2 2.8E-06 9.6E-11 60.0 6.8 96 96-195 14-131 (158)
205 1klx_A Cysteine rich protein B 98.2 5.6E-05 1.9E-09 52.7 12.3 88 90-182 31-126 (138)
206 1klx_A Cysteine rich protein B 98.2 4.3E-05 1.5E-09 53.3 11.4 111 97-217 8-126 (138)
207 1na3_A Designed protein CTPR2; 98.1 2.2E-05 7.4E-10 50.0 9.2 57 124-180 13-70 (91)
208 3ma5_A Tetratricopeptide repea 98.1 2.7E-05 9.1E-10 50.9 8.7 60 85-146 8-67 (100)
209 2kc7_A BFR218_protein; tetratr 98.1 5E-06 1.7E-10 54.3 5.0 65 230-294 6-72 (99)
210 3ly7_A Transcriptional activat 98.0 0.00099 3.4E-08 54.0 18.2 152 35-192 182-347 (372)
211 3bee_A Putative YFRE protein; 98.0 3.1E-05 1E-09 49.8 7.0 66 256-321 5-73 (93)
212 3ly7_A Transcriptional activat 97.9 0.00092 3.1E-08 54.2 16.4 48 81-130 191-243 (372)
213 3u64_A Protein TP_0956; tetrat 97.9 0.00035 1.2E-08 54.4 12.9 83 241-323 180-272 (301)
214 3qww_A SET and MYND domain-con 97.9 4.8E-05 1.7E-09 63.9 8.5 86 200-285 310-410 (433)
215 3qwp_A SET and MYND domain-con 97.8 0.00011 3.8E-09 61.7 9.6 100 194-293 293-412 (429)
216 2kc7_A BFR218_protein; tetratr 97.7 4.5E-05 1.5E-09 49.6 5.2 55 197-253 9-64 (99)
217 3qww_A SET and MYND domain-con 97.7 3E-05 1E-09 65.1 4.6 85 236-320 310-411 (433)
218 3qwp_A SET and MYND domain-con 97.6 9.1E-05 3.1E-09 62.3 6.6 89 231-319 294-399 (429)
219 2v5f_A Prolyl 4-hydroxylase su 97.6 0.00031 1.1E-08 46.2 7.9 75 223-297 4-86 (104)
220 3mkq_A Coatomer beta'-subunit; 97.6 0.004 1.4E-07 57.1 17.6 132 88-252 633-764 (814)
221 3bee_A Putative YFRE protein; 97.5 0.00067 2.3E-08 43.4 8.4 63 119-181 5-71 (93)
222 3mkq_A Coatomer beta'-subunit; 97.5 0.007 2.4E-07 55.4 17.3 128 24-180 606-734 (814)
223 1pc2_A Mitochondria fission pr 97.4 0.001 3.5E-08 46.5 8.7 87 205-293 15-107 (152)
224 3lvg_A Clathrin heavy chain 1; 97.4 3.3E-09 1.1E-13 87.2 -22.6 224 47-304 53-276 (624)
225 1pc2_A Mitochondria fission pr 97.3 0.0022 7.7E-08 44.7 8.6 69 82-151 30-102 (152)
226 4ady_A RPN2, 26S proteasome re 97.2 0.11 3.9E-06 47.6 21.1 254 26-284 383-656 (963)
227 2v5f_A Prolyl 4-hydroxylase su 97.1 0.0038 1.3E-07 40.8 8.6 32 120-151 46-77 (104)
228 3lvg_A Clathrin heavy chain 1; 97.1 2.7E-06 9.3E-11 70.4 -8.4 250 3-276 42-323 (624)
229 3u64_A Protein TP_0956; tetrat 97.0 0.004 1.4E-07 48.5 9.1 86 100-185 179-272 (301)
230 1nzn_A CGI-135 protein, fissio 96.8 0.025 8.5E-07 38.0 10.0 89 204-294 17-111 (126)
231 4fhn_B Nucleoporin NUP120; pro 96.6 0.14 4.9E-06 48.9 18.0 52 22-74 817-868 (1139)
232 1wy6_A Hypothetical protein ST 96.6 0.087 3E-06 35.7 11.8 59 227-285 94-153 (172)
233 1nzn_A CGI-135 protein, fissio 96.6 0.025 8.6E-07 38.0 9.0 87 63-151 16-105 (126)
234 1qsa_A Protein (soluble lytic 96.5 0.37 1.3E-05 42.5 22.2 115 167-285 228-347 (618)
235 3mkq_B Coatomer subunit alpha; 96.4 0.16 5.4E-06 36.4 16.1 105 128-252 13-117 (177)
236 3ffl_A Anaphase-promoting comp 96.3 0.055 1.9E-06 38.2 9.5 124 22-159 25-161 (167)
237 3ffl_A Anaphase-promoting comp 96.2 0.074 2.5E-06 37.5 10.1 130 124-267 24-165 (167)
238 4gns_B Protein CSD3, chitin bi 96.2 0.025 8.6E-07 50.7 9.2 124 192-318 252-398 (754)
239 4fhn_B Nucleoporin NUP120; pro 96.1 0.43 1.5E-05 45.6 17.9 191 125-319 817-1049(1139)
240 3mkq_B Coatomer subunit alpha; 96.0 0.25 8.5E-06 35.4 16.0 22 51-72 37-58 (177)
241 4h7y_A Dual specificity protei 96.0 0.21 7.2E-06 34.6 11.1 48 167-215 74-121 (161)
242 4h7y_A Dual specificity protei 95.9 0.15 5.2E-06 35.2 10.1 54 133-186 73-127 (161)
243 4ady_A RPN2, 26S proteasome re 95.8 1.1 3.9E-05 41.3 22.0 278 2-285 390-695 (963)
244 4b4t_P 26S proteasome regulato 95.8 0.51 1.7E-05 39.8 15.3 191 61-253 29-247 (445)
245 2ff4_A Probable regulatory pro 95.8 0.48 1.6E-05 39.2 14.8 71 122-192 173-249 (388)
246 4gns_B Protein CSD3, chitin bi 95.7 0.39 1.3E-05 43.2 14.5 128 122-251 250-398 (754)
247 3o48_A Mitochondria fission 1 95.6 0.16 5.3E-06 34.3 9.0 71 81-152 37-110 (134)
248 1wy6_A Hypothetical protein ST 95.5 0.33 1.1E-05 32.9 14.2 69 151-221 89-157 (172)
249 4b4t_P 26S proteasome regulato 95.2 1.2 4E-05 37.6 17.6 187 31-217 30-247 (445)
250 1y8m_A FIS1; mitochondria, unk 95.0 0.52 1.8E-05 32.3 10.6 70 81-151 36-108 (144)
251 3txn_A 26S proteasome regulato 94.9 1.3 4.5E-05 36.5 22.6 284 18-322 20-345 (394)
252 2ff4_A Probable regulatory pro 93.9 0.098 3.4E-06 43.3 5.9 60 226-285 173-233 (388)
253 3lpz_A GET4 (YOR164C homolog); 93.6 2.2 7.7E-05 34.1 21.8 170 121-319 36-215 (336)
254 1v54_E Cytochrome C oxidase po 93.3 0.95 3.2E-05 28.8 9.9 70 162-233 18-88 (109)
255 1y8m_A FIS1; mitochondria, unk 93.2 1.4 4.7E-05 30.2 9.7 63 119-181 38-105 (144)
256 4b4t_R RPN7, 26S proteasome re 93.1 2.7 9.4E-05 35.2 13.4 96 122-217 133-237 (429)
257 2wpv_A GET4, UPF0363 protein Y 92.7 3.1 0.00011 33.0 20.5 134 121-269 34-177 (312)
258 2y69_E Cytochrome C oxidase su 91.8 2 6.9E-05 29.0 9.9 69 163-233 62-131 (152)
259 1zbp_A Hypothetical protein VP 91.0 4.3 0.00015 31.3 12.8 120 162-291 6-134 (273)
260 1zbp_A Hypothetical protein VP 90.6 4.8 0.00016 31.0 14.0 113 93-217 6-129 (273)
261 3o48_A Mitochondria fission 1 90.5 2.8 9.7E-05 28.3 9.7 13 236-248 90-102 (134)
262 2p58_C Putative type III secre 89.2 2.9 0.0001 26.5 7.5 51 57-114 49-99 (116)
263 2uwj_G Type III export protein 89.2 2.7 9.1E-05 26.7 6.9 50 58-114 49-98 (115)
264 4b4t_R RPN7, 26S proteasome re 88.3 10 0.00034 31.8 12.4 98 85-182 132-237 (429)
265 3ltj_A Alpharep-4; protein eng 88.1 6 0.0002 28.7 21.5 108 119-237 89-196 (201)
266 1v54_E Cytochrome C oxidase po 88.1 3.6 0.00012 26.2 9.1 62 99-161 25-87 (109)
267 3ltm_A Alpha-REP4; protein eng 87.3 6.9 0.00024 28.6 20.9 25 39-63 24-48 (211)
268 3lpz_A GET4 (YOR164C homolog); 86.6 11 0.00037 30.2 24.1 141 57-216 64-215 (336)
269 2wpv_A GET4, UPF0363 protein Y 84.9 13 0.00044 29.5 21.4 170 19-217 35-217 (312)
270 2y69_E Cytochrome C oxidase su 84.8 7.2 0.00025 26.4 9.1 60 101-161 70-130 (152)
271 3ltm_A Alpha-REP4; protein eng 83.5 11 0.00038 27.5 21.9 160 9-181 25-184 (211)
272 3txn_A 26S proteasome regulato 82.7 19 0.00065 29.7 29.7 168 50-217 21-210 (394)
273 3ltj_A Alpharep-4; protein eng 82.4 12 0.0004 27.1 21.4 17 223-239 151-167 (201)
274 3bqo_A Telomeric repeat-bindin 81.6 13 0.00044 27.0 11.8 69 240-308 94-168 (211)
275 4gq2_M Nucleoporin NUP120; bet 81.4 23 0.00079 33.2 12.4 129 23-167 816-950 (950)
276 4b4t_S RPN3, 26S proteasome re 79.7 28 0.00096 29.9 11.2 65 49-113 232-299 (523)
277 3esl_A Checkpoint serine/threo 77.4 19 0.00064 26.4 9.9 52 98-149 93-144 (202)
278 2ion_A PDCD4, programmed cell 75.9 17 0.00058 25.2 8.2 67 123-189 12-81 (152)
279 1oyz_A Hypothetical protein YI 74.3 27 0.00093 26.8 22.1 122 151-285 140-262 (280)
280 2nsz_A Programmed cell death p 71.9 20 0.00067 24.1 9.5 67 123-189 10-79 (129)
281 2wvi_A Mitotic checkpoint seri 71.0 24 0.00083 24.8 7.8 27 191-217 99-125 (164)
282 1qsa_A Protein (soluble lytic 70.0 58 0.002 28.8 26.0 115 135-253 229-348 (618)
283 2uwj_G Type III export protein 69.4 19 0.00065 22.9 7.7 49 129-181 48-96 (115)
284 2d2s_A Exocyst complex compone 68.9 34 0.0012 25.8 8.3 90 53-146 23-117 (235)
285 2r9g_A AAA ATPase, central reg 68.2 32 0.0011 25.1 8.7 38 165-203 26-63 (204)
286 2p58_C Putative type III secre 68.1 20 0.0007 22.8 8.3 48 129-180 49-96 (116)
287 4gq2_M Nucleoporin NUP120; bet 67.7 82 0.0028 29.6 13.0 86 194-285 816-925 (950)
288 3esl_A Checkpoint serine/threo 67.4 34 0.0012 25.0 12.2 68 155-224 82-150 (202)
289 2d2s_A Exocyst complex compone 67.3 32 0.0011 25.9 8.0 88 126-216 24-119 (235)
290 4ets_A Ferric uptake regulatio 65.9 23 0.00077 24.9 6.5 72 64-137 13-86 (162)
291 4a1g_A Mitotic checkpoint seri 63.3 35 0.0012 23.7 9.8 46 103-148 84-129 (152)
292 4b4t_S RPN3, 26S proteasome re 61.0 80 0.0027 27.1 17.2 183 119-322 230-431 (523)
293 4aez_C MAD3, mitotic spindle c 59.3 53 0.0018 24.5 8.4 53 170-223 131-184 (223)
294 3ctd_A Putative ATPase, AAA fa 57.2 55 0.0019 24.1 7.5 38 165-202 47-84 (213)
295 3bge_A Predicted ATPase; struc 56.1 56 0.0019 23.8 7.2 37 165-201 19-55 (201)
296 1ug3_A EIF4GI, eukaryotic prot 53.4 86 0.0029 25.1 10.6 28 20-47 14-41 (339)
297 3ygs_P Procaspase 9; apoptosis 52.5 23 0.00077 22.3 4.2 37 31-67 51-87 (97)
298 1oyz_A Hypothetical protein YI 52.0 76 0.0026 24.1 22.6 155 150-319 102-262 (280)
299 1wgl_A TOLL-interacting protei 50.5 18 0.00062 20.3 3.0 49 277-326 10-58 (59)
300 4aez_C MAD3, mitotic spindle c 50.2 77 0.0026 23.6 8.8 49 101-149 131-179 (223)
301 4a1g_A Mitotic checkpoint seri 48.9 64 0.0022 22.4 11.5 52 172-224 84-136 (152)
302 3bu8_A Telomeric repeat-bindin 47.7 83 0.0028 23.3 7.9 69 100-169 88-163 (235)
303 3eyy_A Putative iron uptake re 47.1 61 0.0021 22.1 6.1 60 178-240 9-68 (145)
304 1wdy_A 2-5A-dependent ribonucl 46.3 92 0.0031 23.4 8.1 51 22-72 7-60 (285)
305 1oai_A Nuclear RNA export fact 46.0 19 0.00065 20.2 2.7 25 60-84 32-56 (59)
306 2ion_A PDCD4, programmed cell 45.6 72 0.0025 22.0 8.5 55 20-74 12-71 (152)
307 2fe3_A Peroxide operon regulat 45.2 70 0.0024 21.7 7.3 58 76-135 14-71 (145)
308 2xig_A Ferric uptake regulatio 44.9 73 0.0025 21.8 7.7 61 178-240 17-77 (150)
309 3eyy_A Putative iron uptake re 44.7 72 0.0024 21.7 6.7 57 76-135 11-67 (145)
310 3ygs_P Procaspase 9; apoptosis 44.0 18 0.00061 22.8 2.7 37 3-39 54-90 (97)
311 2w57_A Ferric uptake regulatio 43.5 77 0.0026 21.7 7.1 63 177-241 6-69 (150)
312 2wvi_A Mitotic checkpoint seri 43.1 84 0.0029 22.1 11.3 51 138-188 78-131 (164)
313 1mzb_A Ferric uptake regulatio 42.9 73 0.0025 21.3 7.0 60 179-240 9-69 (136)
314 2fe3_A Peroxide operon regulat 42.5 78 0.0027 21.5 7.4 67 33-100 6-72 (145)
315 2b7e_A PRE-mRNA processing pro 40.4 17 0.00058 20.4 1.9 27 171-197 4-30 (59)
316 2ijq_A Hypothetical protein; s 40.2 94 0.0032 21.8 7.2 16 270-285 88-103 (161)
317 1ug3_A EIF4GI, eukaryotic prot 39.6 1.5E+02 0.005 23.8 14.2 26 121-146 142-167 (339)
318 2nsz_A Programmed cell death p 39.1 84 0.0029 20.9 9.8 55 20-74 10-69 (129)
319 3pvs_A Replication-associated 38.9 1.7E+02 0.0059 24.5 11.4 14 133-146 205-218 (447)
320 2p1h_A APAF-1, apoptotic prote 38.9 61 0.0021 20.0 4.6 38 30-67 49-86 (94)
321 2ijq_A Hypothetical protein; s 38.2 1E+02 0.0035 21.6 8.1 51 166-216 45-103 (161)
322 3eiq_C Programmed cell death p 37.9 1.6E+02 0.0055 23.8 18.5 195 21-217 58-321 (358)
323 3bqo_A Telomeric repeat-bindin 37.2 73 0.0025 23.2 5.1 19 128-146 125-143 (211)
324 3l6a_A Eukaryotic translation 35.7 1.8E+02 0.006 23.7 9.5 25 87-111 15-39 (364)
325 3eu9_A Huntingtin-interacting 35.7 89 0.003 22.7 6.0 218 24-253 13-236 (240)
326 4ets_A Ferric uptake regulatio 35.6 1.1E+02 0.0038 21.3 6.1 65 35-100 19-85 (162)
327 2o03_A Probable zinc uptake re 35.2 60 0.0021 21.6 4.4 9 206-214 28-36 (131)
328 2dod_A Transcription elongatio 34.7 51 0.0017 20.0 3.5 36 63-99 15-50 (82)
329 3mwm_A ZUR, putative metal upt 34.0 55 0.0019 22.1 4.1 42 197-239 22-63 (139)
330 3ubw_A 14-3-3E, 14-3-3 protein 33.2 1.6E+02 0.0056 22.5 7.6 15 303-317 211-225 (261)
331 3l6a_A Eukaryotic translation 32.7 2E+02 0.0068 23.4 12.9 56 19-74 14-74 (364)
332 2o03_A Probable zinc uptake re 31.3 83 0.0028 20.9 4.6 43 91-134 17-59 (131)
333 2rg8_A Programmed cell death p 31.0 1.4E+02 0.0047 21.0 6.1 23 52-74 14-36 (165)
334 3re2_A Predicted protein; meni 30.8 44 0.0015 27.1 3.4 27 225-251 297-323 (472)
335 3mwm_A ZUR, putative metal upt 30.8 1E+02 0.0035 20.7 5.0 45 158-202 18-62 (139)
336 3u84_A Menin; MLL, JUND, ledgf 30.7 43 0.0015 27.7 3.4 68 233-300 279-367 (550)
337 1ya0_A SMG-7 transcript varian 30.6 2.6E+02 0.0087 23.9 9.8 67 97-165 165-232 (497)
338 1bpo_A Protein (clathrin); cla 30.5 2.5E+02 0.0086 23.8 9.5 58 167-229 343-400 (494)
339 1uzc_A Hypothetical protein FL 30.1 59 0.002 19.0 3.2 35 63-98 13-47 (71)
340 3lxu_X Tripeptidyl-peptidase 2 29.8 4.1E+02 0.014 26.3 10.1 54 165-222 1296-1349(1354)
341 1mzb_A Ferric uptake regulatio 29.4 80 0.0027 21.1 4.3 25 125-149 22-47 (136)
342 2fu4_A Ferric uptake regulatio 28.9 93 0.0032 18.3 7.1 59 179-239 8-67 (83)
343 2xig_A Ferric uptake regulatio 28.3 1.4E+02 0.0049 20.3 7.0 60 76-137 19-78 (150)
344 2qq8_A TBC1 domain family memb 28.2 1.9E+02 0.0066 23.0 7.0 42 176-217 216-257 (334)
345 1q2z_A ATP-dependent DNA helic 27.7 1E+02 0.0035 20.3 4.4 53 272-324 42-96 (120)
346 1ixm_A SPO0B, protein (sporula 27.5 1.2E+02 0.0043 21.8 5.2 21 159-179 38-58 (192)
347 2qfz_A TBC1 domain family memb 26.4 2.5E+02 0.0084 22.4 8.2 39 179-217 235-273 (345)
348 2f6m_A Suppressor protein STP2 25.5 1E+02 0.0035 17.7 3.9 29 88-116 6-34 (65)
349 3re2_A Predicted protein; meni 25.5 2E+02 0.0069 23.4 6.2 27 153-179 296-322 (472)
350 3hra_A Ankyrin repeat family p 25.3 1.1E+02 0.0038 21.5 4.8 16 28-43 13-28 (201)
351 2crb_A Nuclear receptor bindin 24.9 1.3E+02 0.0045 18.7 4.2 27 259-285 17-43 (97)
352 2w57_A Ferric uptake regulatio 24.9 1.7E+02 0.0057 20.0 6.4 59 76-136 9-68 (150)
353 2zu6_B Programmed cell death p 24.6 2.6E+02 0.0088 22.0 19.0 28 20-47 6-33 (307)
354 3t5v_B Nuclear mRNA export pro 23.7 2.5E+02 0.0085 23.7 7.0 61 122-182 178-249 (455)
355 2yru_A Steroid receptor RNA ac 23.4 1.6E+02 0.0056 19.3 5.3 19 198-216 71-89 (118)
356 2rg8_A Programmed cell death p 23.0 2E+02 0.0068 20.1 8.6 57 124-180 14-72 (165)
357 1rw2_A ATP-dependent DNA helic 22.1 1.4E+02 0.0046 20.7 4.3 52 272-323 73-126 (152)
358 3ph0_C ASCG; type III secretio 21.7 1.1E+02 0.0039 16.9 4.1 10 130-139 50-59 (61)
359 1ya0_A SMG-7 transcript varian 21.5 3.8E+02 0.013 22.9 9.5 75 159-236 158-232 (497)
360 1ixm_A SPO0B, protein (sporula 20.8 1.1E+02 0.0037 22.1 3.8 73 203-285 14-86 (192)
361 1naf_A ADP-ribosylation factor 20.7 2.2E+02 0.0076 19.8 6.0 23 297-319 121-143 (158)
362 2fv2_A RCD1 required for cell 20.4 1.4E+02 0.0047 23.0 4.3 60 52-111 177-236 (268)
363 3ub0_A Non-structural protein 20.3 2.4E+02 0.0083 20.1 5.2 19 99-117 18-36 (199)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-33 Score=248.04 Aligned_cols=311 Identities=11% Similarity=-0.037 Sum_probs=261.0
Q ss_pred ccchhHHhhhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHhhCCCC-------------------CchhHHHHHHHHHh
Q 048799 2 LKDGSKLFDELP--ERNLVTWNVMITGLVKWGELEYARSLFEEMPCR-------------------NVVSWTGIIDGYTR 60 (331)
Q Consensus 2 ~~~A~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~l~~~~~~ 60 (331)
+++|+++|+.+. +++..+++.++.+|.+.|++++|..+|+++... +..+|+.++.+|.+
T Consensus 133 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (597)
T 2xpi_A 133 YARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTN 212 (597)
T ss_dssp HHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 567788888774 667888888888888888888888888854322 36788888888888
Q ss_pred cCChhHHHHHHHHHHhccCCCCchHHH--------------------------------------HHHHHHHhhcCchhH
Q 048799 61 MNRSNGALALFRRMVACEYTEPSEITI--------------------------------------LAVFPAIWQNGDVRN 102 (331)
Q Consensus 61 ~~~~~~a~~~~~~~~~~~~~~~~~~~~--------------------------------------~~l~~~~~~~~~~~~ 102 (331)
.|++++|+++|+++..... .+...+ +.++..|.+.|++++
T Consensus 213 ~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 290 (597)
T 2xpi_A 213 LSNFDRAKECYKEALMVDA--KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCc--hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHH
Confidence 8888888888888854322 122222 223556667788888
Q ss_pred HHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 048799 103 CQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQK 181 (331)
Q Consensus 103 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 181 (331)
|.++|+++.+. ++ +..+++.++.+|.+.|++++|..+|+++....| +..+++.++.++.+.|++++|.++++++..
T Consensus 291 A~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 367 (597)
T 2xpi_A 291 AEDYLSSINGL--EK-SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367 (597)
T ss_dssp HHHHHHTSTTG--GG-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcC--Cc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 88888888776 23 888999999999999999999999999987655 678899999999999999999999999985
Q ss_pred ccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHH
Q 048799 182 VVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVW 260 (331)
Q Consensus 182 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~ 260 (331)
. .+.+..++..++..|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++... +.+..+|
T Consensus 368 ~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 444 (597)
T 2xpi_A 368 R-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPY 444 (597)
T ss_dssp H-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHH
T ss_pred h-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHH
Confidence 4 3457889999999999999999999999999874 2346889999999999999999999999999877 4578999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhc
Q 048799 261 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320 (331)
Q Consensus 261 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (331)
..++.+|.+.|++++|.++|+++.+..|+++.+|..++.++.+.|++++|.++++++.+.
T Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 445 LFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999899999999999999999999999999876
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-33 Score=250.64 Aligned_cols=315 Identities=8% Similarity=-0.067 Sum_probs=241.8
Q ss_pred ccchhHHhhhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHhhCC--CCCchhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048799 2 LKDGSKLFDELP--ERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDGYTRMNRSNGALALFRRMVAC 77 (331)
Q Consensus 2 ~~~A~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 77 (331)
+++|+++|+++. .|+..++..++.+|.+.|++++|..+|+.+. .++..+++.++.+|.+.|++++|.++|+++...
T Consensus 100 ~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 179 (597)
T 2xpi_A 100 YKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPF 179 (597)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTT
T ss_pred chHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCc
Confidence 456677777665 4666677777777777777777777777773 456677777777777777777777777743121
Q ss_pred c--------------CCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHH-----------------
Q 048799 78 E--------------YTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL----------------- 126 (331)
Q Consensus 78 ~--------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----------------- 126 (331)
. +.+++..+|+.++.+|.+.|++++|.++|+++.+.++. +...+..+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~ 257 (597)
T 2xpi_A 180 RKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK--CYEAFDQLVSNHLLTADEEWDLVLK 257 (597)
T ss_dssp C----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred cccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch--hhHHHHHHHHhhcccchhHHHHHHh
Confidence 1 22335667777777777777777777777777776543 23332222
Q ss_pred ---------------------HHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCC
Q 048799 127 ---------------------IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185 (331)
Q Consensus 127 ---------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 185 (331)
+..|.+.|++++|.++|+++...+++..+|+.++.+|.+.|++++|+++|+++.+.+ +
T Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 336 (597)
T 2xpi_A 258 LNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-P 336 (597)
T ss_dssp SCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred cCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-c
Confidence 344556677777777777776655678888888888888999999999998888754 2
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHH
Q 048799 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLL 264 (331)
Q Consensus 186 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~ 264 (331)
.+..++..++.++.+.|++++|..+++++.+. .+.+..++..++..|.+.|++++|.++|+++... +.+..+|..++
T Consensus 337 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 414 (597)
T 2xpi_A 337 YNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFA 414 (597)
T ss_dssp TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 36677888888888899999999999888764 3557888999999999999999999999998766 34678999999
Q ss_pred HHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 265 GACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 265 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
.+|.+.|++++|.++|+++.+..|++...+..++.+|.+.|++++|.++++++.+..
T Consensus 415 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 415 HSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999889888899999999999999999999999987754
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.7e-32 Score=235.06 Aligned_cols=185 Identities=10% Similarity=0.004 Sum_probs=156.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCc---------hhHHHHHHhhhhhcCCCcch
Q 048799 49 VSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGD---------VRNCQLIHGYGEKRGFNAFH 119 (331)
Q Consensus 49 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~ 119 (331)
..++.+|++|++.|++++|+++|++| ...|+.||..||++++.+|++.+. ++.|.++|++|.+.|+.| |
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M-~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-d 104 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEA-RRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-N 104 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHH-HHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-C
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-C
Confidence 35777888888888888888888888 667888888888888888876543 577888888888888888 8
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHhhhc--CCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 048799 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVE--RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197 (331)
Q Consensus 120 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 197 (331)
..+|++|+.+|++.|++++|.++|++|... .|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.||.+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 888888888888888888888888888766 578888888888888888888888888888888888888888888888
Q ss_pred HhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHh
Q 048799 198 CSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236 (331)
Q Consensus 198 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 236 (331)
|++.|+.++|.+++++|.+. +..|+..||+.++..|+.
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred HhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 88888888888888888887 888888888888887765
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=7e-32 Score=231.23 Aligned_cols=202 Identities=13% Similarity=0.122 Sum_probs=176.2
Q ss_pred HHHHHHHHHHhccCCCCch-HHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCC---------
Q 048799 66 GALALFRRMVACEYTEPSE-ITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC--------- 135 (331)
Q Consensus 66 ~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------- 135 (331)
.+..+.+++ +..+..+.+ ..++.++.+|++.|++++|.++|++|.+.|+.| |..+|++|+.+|++.+.
T Consensus 8 ~~e~L~~~~-~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 8 PSENLSRKA-KKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred hHHHHHHHH-HHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcch
Confidence 344555666 555554444 468889999999999999999999999999999 99999999999987765
Q ss_pred HhHHHHHHHHhhhc--CCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 048799 136 IFSALKLFEDISVE--RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDK 213 (331)
Q Consensus 136 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 213 (331)
+++|.++|++|... .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+.++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 68899999999877 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC--CccHHHHHHHHHHHhcC
Q 048799 214 MVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE--ITNVVVWRTLLGACSFH 270 (331)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~ 270 (331)
|.+. |+.||..+|+.|+.+|++.|++++|.+++++|.+. .|+..||+.++..|...
T Consensus 166 M~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 166 MVES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9998 99999999999999999999999999999999877 89999999999988753
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.1e-29 Score=213.43 Aligned_cols=298 Identities=13% Similarity=0.063 Sum_probs=204.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhhCC--CC-CchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHH
Q 048799 16 NLVTWNVMITGLVKWGELEYARSLFEEMP--CR-NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92 (331)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (331)
+..+|..+..++.+.|++++|+..|+++. .| +..+|..+..++.+.|++++|.+.|++++... +.+...+..+..
T Consensus 66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 143 (388)
T 1w3b_A 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGN 143 (388)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHH
Confidence 45556666666666666666666666554 23 23356666666666666666666666653321 123344555556
Q ss_pred HHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHH
Q 048799 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKE 171 (331)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 171 (331)
.+...|++++|.+.|+++++..+. +..++..++.++...|++++|...|+++....| +...|..+...+...|++++
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 221 (388)
T 1w3b_A 144 LLKALGRLEEAKACYLKAIETQPN--FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666666665332 455666666666666666666666666665544 35566666666667777777
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcc
Q 048799 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251 (331)
Q Consensus 172 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 251 (331)
|+..|++..... +.+..++..+..++...|++++|...|+++.+. .+.+..++..++..+.+.|++++|.+.|+++.
T Consensus 222 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 222 AVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777776666532 224667777888888888888888888888764 23356778888888888888888888888877
Q ss_pred cC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhc
Q 048799 252 SE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320 (331)
Q Consensus 252 ~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (331)
.. +.+..++..++..+...|++++|.+.++++.+..|++...+..++.++.+.|++++|...++++.+.
T Consensus 299 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred hhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66 4567788888888888888888888888888888888788888888888888888888888888764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=6.9e-29 Score=208.54 Aligned_cols=313 Identities=12% Similarity=0.035 Sum_probs=275.9
Q ss_pred CccchhHHhhhcC--Cc-hHHHHHHHHHHHHHcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChhHHHHHHHHH
Q 048799 1 FLKDGSKLFDELP--ER-NLVTWNVMITGLVKWGELEYARSLFEEMP---CRNVVSWTGIIDGYTRMNRSNGALALFRRM 74 (331)
Q Consensus 1 ~~~~A~~~~~~~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 74 (331)
++++|++.|+.+. .| +...+..+...+.+.|++++|...++... ..+..+|..+...+.+.|++++|+..|+++
T Consensus 14 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 93 (388)
T 1w3b_A 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHA 93 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4678888888765 34 56677788899999999999999998765 346678999999999999999999999999
Q ss_pred HhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cH
Q 048799 75 VACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NL 153 (331)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~ 153 (331)
.... +.+..++..+..++...|++++|...++++.+..+. +..++..+...+...|++++|...|+++....| +.
T Consensus 94 l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 169 (388)
T 1w3b_A 94 LRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD--LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFA 169 (388)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT--CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCH
T ss_pred HHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 5432 345668999999999999999999999999988654 677888999999999999999999999988766 57
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHH
Q 048799 154 VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDM 233 (331)
Q Consensus 154 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 233 (331)
.+|..+...+...|++++|+..|+++.+.+ +.+...+..+...+...|++++|...++++.+. .+.+..++..++..
T Consensus 170 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 246 (388)
T 1w3b_A 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACV 246 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHH
Confidence 899999999999999999999999998854 235678889999999999999999999999875 23367889999999
Q ss_pred HHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHH
Q 048799 234 LGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312 (331)
Q Consensus 234 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 312 (331)
+.+.|++++|.+.|+++....| ++.+|..++.++.+.|++++|.+.++++.+..|+++..+..++.++...|++++|..
T Consensus 247 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 326 (388)
T 1w3b_A 247 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 326 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999988744 578999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 048799 313 LRRVVDER 320 (331)
Q Consensus 313 ~~~~~~~~ 320 (331)
.++++.+.
T Consensus 327 ~~~~al~~ 334 (388)
T 1w3b_A 327 LYRKALEV 334 (388)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHhc
Confidence 99998774
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=6.9e-27 Score=200.09 Aligned_cols=308 Identities=14% Similarity=0.051 Sum_probs=260.6
Q ss_pred HHhhhcC---CchHHHHHHHHHHHHHcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCC
Q 048799 7 KLFDELP---ERNLVTWNVMITGLVKWGELEYARSLFEEMP---CRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80 (331)
Q Consensus 7 ~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 80 (331)
..|.+.. +.+..++..++..+.+.|++++|+.+|+++. ..+..+|..+..++...|++++|+..|++++...
T Consensus 13 ~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-- 90 (450)
T 2y4t_A 13 LGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-- 90 (450)
T ss_dssp ----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred ccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--
Confidence 3444443 3467889999999999999999999999876 3467889999999999999999999999995432
Q ss_pred CCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchh---HHHHHH------------HHHHHhcCCHhHHHHHHHH
Q 048799 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHI---HVSNCL------------IDTYAKCGCIFSALKLFED 145 (331)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~~~~~~ 145 (331)
+.+..++..+..++...|++++|...|+++.+..+. +. ..+..+ +..+...|++++|...|++
T Consensus 91 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS--ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 356778999999999999999999999999987654 45 555555 4558999999999999999
Q ss_pred hhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcH
Q 048799 146 ISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDI 224 (331)
Q Consensus 146 ~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 224 (331)
+....| +..++..++.+|.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...|+++.+. .+.+.
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 245 (450)
T 2y4t_A 169 ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHK 245 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChH
Confidence 987765 67889999999999999999999999998754 356788999999999999999999999999865 22344
Q ss_pred hhHHHH------------HHHHHhcCCHHHHHHHHhhcccCCcc-----HHHHHHHHHHHhcCCchhHHHHHHHHHHHhh
Q 048799 225 KHYGCL------------IDMLGRAGRLEQAEKVASGIPSEITN-----VVVWRTLLGACSFHGNVEMGERVTRKILEME 287 (331)
Q Consensus 225 ~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 287 (331)
..+..+ +..+...|++++|...|+++....|+ ...+..++.++.+.|++++|...++++.+..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 455444 78899999999999999999877454 4578889999999999999999999999999
Q ss_pred cCCCccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 288 RGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 288 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
|+++..+..++.++...|++++|...++++.+..
T Consensus 326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 9998999999999999999999999999998743
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=4.1e-26 Score=195.30 Aligned_cols=291 Identities=10% Similarity=0.034 Sum_probs=247.4
Q ss_pred CccchhHHhhhcC---CchHHHHHHHHHHHHHcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChhHHHHHHHHH
Q 048799 1 FLKDGSKLFDELP---ERNLVTWNVMITGLVKWGELEYARSLFEEMP---CRNVVSWTGIIDGYTRMNRSNGALALFRRM 74 (331)
Q Consensus 1 ~~~~A~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 74 (331)
++++|+++|+++. +.+..+|..++.++...|++++|...|+++. ..+..++..+..+|...|++++|...|+++
T Consensus 41 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 120 (450)
T 2y4t_A 41 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV 120 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3578899999875 4578899999999999999999999999986 235678999999999999999999999999
Q ss_pred HhccCCCCch---HHHHHH------------HHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHH
Q 048799 75 VACEYTEPSE---ITILAV------------FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSA 139 (331)
Q Consensus 75 ~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 139 (331)
.... +.+. ..+..+ ...+...|++++|...++++.+..+. +..++..++.+|.+.|++++|
T Consensus 121 ~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 196 (450)
T 2y4t_A 121 LKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW--DAELRELRAECFIKEGEPRKA 196 (450)
T ss_dssp HTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCGGGG
T ss_pred HhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHCCCHHHH
Confidence 4422 2233 455444 44588999999999999999987554 788899999999999999999
Q ss_pred HHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCC-HHHHHHH------------HHHHhccCChH
Q 048799 140 LKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN-RVTFLSV------------LNACSHGGLVE 205 (331)
Q Consensus 140 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l------------~~~~~~~~~~~ 205 (331)
...|+++....| +..+|..++..|...|++++|+..|+++.... |+ ...+..+ ...+...|+++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 274 (450)
T 2y4t_A 197 ISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYT 274 (450)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 999999987754 68899999999999999999999999998743 43 3444444 78899999999
Q ss_pred HHHHHHHHHHHhcCCCCc-----HhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHH
Q 048799 206 EGLKFFDKMVEECEVLPD-----IKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERV 279 (331)
Q Consensus 206 ~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~ 279 (331)
+|...|+++.+. .|+ ...+..++..+.+.|++++|...++++... +.+...|..++.+|...|++++|...
T Consensus 275 ~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 351 (450)
T 2y4t_A 275 DATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQD 351 (450)
T ss_dssp HHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999875 343 457888999999999999999999998776 44689999999999999999999999
Q ss_pred HHHHHHhhcCCCccHHHHHHH
Q 048799 280 TRKILEMERGYGGDYVLMYNI 300 (331)
Q Consensus 280 ~~~~~~~~~~~~~~~~~l~~~ 300 (331)
++++.+..|+++..+..+..+
T Consensus 352 ~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 352 YETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHhCcchHHHHHHHHHH
Confidence 999999999998888888743
No 9
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=4e-24 Score=177.22 Aligned_cols=301 Identities=14% Similarity=0.049 Sum_probs=252.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHH
Q 048799 16 NLVTWNVMITGLVKWGELEYARSLFEEMP---CRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92 (331)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (331)
|+..+..+...+...|++++|+..|+++. ..+..++..+...+...|++++|...|+++.... +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHH
Confidence 56778889999999999999999999876 2456789999999999999999999999985432 346678899999
Q ss_pred HHhhcCchhHHHHHHhhhhhcCCCc-chhHHHHHH------------HHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHH
Q 048799 93 AIWQNGDVRNCQLIHGYGEKRGFNA-FHIHVSNCL------------IDTYAKCGCIFSALKLFEDISVERK-NLVSWTS 158 (331)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 158 (331)
++...|++++|...++++.+..+.. .+...+..+ +..+...|++++|...|+++....| +...+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 9999999999999999999886510 255555555 6889999999999999999987755 6788899
Q ss_pred HHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHH----------
Q 048799 159 IISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG---------- 228 (331)
Q Consensus 159 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------- 228 (331)
+...+...|++++|+..++++.... +.+..++..+...+...|++++|...++++.+. . +.+...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~-~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-D-QDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-C-ccchHHHHHHHHHHHHHH
Confidence 9999999999999999999998753 346788889999999999999999999999875 2 22333332
Q ss_pred --HHHHHHHhcCCHHHHHHHHhhcccCCcc-H----HHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 048799 229 --CLIDMLGRAGRLEQAEKVASGIPSEITN-V----VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301 (331)
Q Consensus 229 --~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (331)
.++..+.+.|++++|...++++....|+ . ..+..+..++...|++++|...++++.+..|+++..+..++.++
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3366789999999999999998876343 2 33556788899999999999999999999999989999999999
Q ss_pred hhhccCcchHHHHHHHhhcc
Q 048799 302 AGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 302 ~~~g~~~~a~~~~~~~~~~~ 321 (331)
...|++++|...+++..+..
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999988754
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5e-25 Score=191.60 Aligned_cols=318 Identities=11% Similarity=-0.041 Sum_probs=256.6
Q ss_pred CccchhHHhhhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHhhCC--CC-CchhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048799 1 FLKDGSKLFDELP--ERNLVTWNVMITGLVKWGELEYARSLFEEMP--CR-NVVSWTGIIDGYTRMNRSNGALALFRRMV 75 (331)
Q Consensus 1 ~~~~A~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 75 (331)
++++|++.|+++. .|+..+|..+..++.+.|++++|...|+++. .| +..+|..+..++...|++++|...|+++.
T Consensus 21 ~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 100 (514)
T 2gw1_A 21 KYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLS 100 (514)
T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3578899999886 5899999999999999999999999999876 33 55789999999999999999999999885
Q ss_pred hccCCC--------------------------------------------------------------------------
Q 048799 76 ACEYTE-------------------------------------------------------------------------- 81 (331)
Q Consensus 76 ~~~~~~-------------------------------------------------------------------------- 81 (331)
...+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (514)
T 2gw1_A 101 LNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANY 180 (514)
T ss_dssp HSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSC
T ss_pred hcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHh
Confidence 433210
Q ss_pred ---CchHHHHHHHHHHh---hcCchhHHHHHHhhhhh-----cCCC-------cchhHHHHHHHHHHHhcCCHhHHHHHH
Q 048799 82 ---PSEITILAVFPAIW---QNGDVRNCQLIHGYGEK-----RGFN-------AFHIHVSNCLIDTYAKCGCIFSALKLF 143 (331)
Q Consensus 82 ---~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~-----~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~ 143 (331)
.+...+......+. +.|++++|...++++.+ .... |.+..++..++..+...|++++|...|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 260 (514)
T 2gw1_A 181 DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDI 260 (514)
T ss_dssp CSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 01223333333333 38999999999999888 3111 325678888899999999999999999
Q ss_pred HHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCc
Q 048799 144 EDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD 223 (331)
Q Consensus 144 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 223 (331)
+++....|+..++..+...+...|++++|+..++++.... +.+...+..+...+...|++++|...++++.+. .+.+
T Consensus 261 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~ 337 (514)
T 2gw1_A 261 KKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPEN 337 (514)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CSSC
T ss_pred HHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--Chhh
Confidence 9998776667778888899999999999999999987753 335667888888899999999999999998864 2336
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCc------cHHH
Q 048799 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG------DYVL 296 (331)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~ 296 (331)
...+..++..+...|++++|...++.+... +.+...+..+...+...|++++|...++++.+..|+++. .+..
T Consensus 338 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 417 (514)
T 2gw1_A 338 IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVG 417 (514)
T ss_dssp SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHH
Confidence 678888888899999999999999988776 335678888889999999999999999999988887755 7888
Q ss_pred HHHHHhh---hccCcchHHHHHHHhhcc
Q 048799 297 MYNILAG---VWRYGDAERLRRVVDERN 321 (331)
Q Consensus 297 l~~~~~~---~g~~~~a~~~~~~~~~~~ 321 (331)
++.++.. .|++++|...++.+.+..
T Consensus 418 l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 418 KATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp HHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 9999998 899999999998887643
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=7.2e-24 Score=184.29 Aligned_cols=301 Identities=10% Similarity=-0.055 Sum_probs=258.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhhCC--CCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHH
Q 048799 16 NLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPA 93 (331)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (331)
....+......+.+.|++++|+..|+++. .|+..+|..+..++...|++++|+..+++++... +.+..++..+..+
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHH
Confidence 45678888999999999999999999987 5888999999999999999999999999995532 3566789999999
Q ss_pred HhhcCchhHHHHHHhhhhhcCCCc--------------------------------------------------------
Q 048799 94 IWQNGDVRNCQLIHGYGEKRGFNA-------------------------------------------------------- 117 (331)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~-------------------------------------------------------- 117 (331)
+...|++++|...|+++.+.++..
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999987765411
Q ss_pred ---------------------chhHHHHHHHHHHHh---cCCHhHHHHHHHHhhh-----c----------CCcHHHHHH
Q 048799 118 ---------------------FHIHVSNCLIDTYAK---CGCIFSALKLFEDISV-----E----------RKNLVSWTS 158 (331)
Q Consensus 118 ---------------------~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~----------~~~~~~~~~ 158 (331)
.+...+..+...+.. .|++++|...|+++.. . +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 123444444444554 8999999999999987 3 224567888
Q ss_pred HHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcC
Q 048799 159 IISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238 (331)
Q Consensus 159 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 238 (331)
+...+...|++++|+..|+++.... |+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998865 44888889999999999999999999999864 3446788999999999999
Q ss_pred CHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHH
Q 048799 239 RLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVV 317 (331)
Q Consensus 239 ~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (331)
++++|...++++... +.+...+..+...+...|++++|...++++.+..|+++..+..++.++...|++++|...++++
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999877 3457889999999999999999999999999999999999999999999999999999999998
Q ss_pred hhccc
Q 048799 318 DERNA 322 (331)
Q Consensus 318 ~~~~~ 322 (331)
.+...
T Consensus 399 ~~~~~ 403 (514)
T 2gw1_A 399 IELEN 403 (514)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 87654
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.94 E-value=1.9e-23 Score=173.17 Aligned_cols=297 Identities=9% Similarity=0.008 Sum_probs=247.1
Q ss_pred CccchhHHhhhcC---CchHHHHHHHHHHHHHcCCHHHHHHHHhhCC--CC-CchhHHHHHHHHHhcCChhHHHHHHHHH
Q 048799 1 FLKDGSKLFDELP---ERNLVTWNVMITGLVKWGELEYARSLFEEMP--CR-NVVSWTGIIDGYTRMNRSNGALALFRRM 74 (331)
Q Consensus 1 ~~~~A~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 74 (331)
++++|++.|+++. +.+..++..+...+...|++++|...|+++. .| +...|..+...+...|++++|...|+++
T Consensus 18 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 97 (359)
T 3ieg_A 18 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV 97 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3578889998875 4467899999999999999999999999876 33 5678999999999999999999999999
Q ss_pred HhccCCCC----chHHHHHH------------HHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhH
Q 048799 75 VACEYTEP----SEITILAV------------FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFS 138 (331)
Q Consensus 75 ~~~~~~~~----~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 138 (331)
.. ..| +...+..+ ...+...|++++|...++++.+..+. +..++..+..++...|++++
T Consensus 98 ~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 172 (359)
T 3ieg_A 98 LK---SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW--DAELRELRAECFIKEGEPRK 172 (359)
T ss_dssp HT---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHH
T ss_pred Hh---cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHCCCHHH
Confidence 44 234 34444444 57888999999999999999988654 77889999999999999999
Q ss_pred HHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHH------------HHHHHHhccCChH
Q 048799 139 ALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL------------SVLNACSHGGLVE 205 (331)
Q Consensus 139 A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------------~l~~~~~~~~~~~ 205 (331)
|...++++....| +..++..+...+...|++++|...|++..+... .+...+. .+...+...|+++
T Consensus 173 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 251 (359)
T 3ieg_A 173 AISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYT 251 (359)
T ss_dssp HHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999988765 678899999999999999999999999987532 2233222 2366788999999
Q ss_pred HHHHHHHHHHHhcCCCCcH----hhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHHHHHH
Q 048799 206 EGLKFFDKMVEECEVLPDI----KHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMGERVT 280 (331)
Q Consensus 206 ~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 280 (331)
+|...++++.+. . +.+. ..+..+...+...|++++|...++++....| +...+..+..++...|++++|...+
T Consensus 252 ~A~~~~~~~~~~-~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 329 (359)
T 3ieg_A 252 DATSKYESVMKT-E-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDY 329 (359)
T ss_dssp HHHHHHHHHHHH-C-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhc-C-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999876 2 2233 2355678899999999999999999987734 7889999999999999999999999
Q ss_pred HHHHHhhcCCCccHHHHHHHHhhhc
Q 048799 281 RKILEMERGYGGDYVLMYNILAGVW 305 (331)
Q Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~~~g 305 (331)
+++.+.+|++...+..+..+....+
T Consensus 330 ~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 330 EAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHH
Confidence 9999999998888877777765544
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.9e-23 Score=171.25 Aligned_cols=289 Identities=11% Similarity=-0.022 Sum_probs=242.0
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHH
Q 048799 15 RNLVTWNVMITGLVKWGELEYARSLFEEMP---CRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVF 91 (331)
Q Consensus 15 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 91 (331)
.+...+..++..+...|++++|..+|+++. ..+...+..++..+...|++++|...++++.... +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHH
Confidence 455667788888999999999999999876 2345677778888999999999999999985432 35677888899
Q ss_pred HHHhhcC-chhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCCh
Q 048799 92 PAIWQNG-DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMG 169 (331)
Q Consensus 92 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 169 (331)
..+...| ++++|...++++.+..+. +...+..++.++...|++++|...|+++....| +...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKT--YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTT--CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 9999999 999999999999987644 677888999999999999999999999987755 467788888999999999
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcC-------CCCcHhhHHHHHHHHHhcCCHHH
Q 048799 170 KEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECE-------VLPDIKHYGCLIDMLGRAGRLEQ 242 (331)
Q Consensus 170 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~ 242 (331)
++|+..++++.+.. +.+...+..+...+...|++++|...++++.+... .+.....+..+...+...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999988753 34577888899999999999999999999887521 13346788899999999999999
Q ss_pred HHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHH-hhhccCc
Q 048799 243 AEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL-AGVWRYG 308 (331)
Q Consensus 243 A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 308 (331)
|...++++... +.+...+..+..++...|++++|.+.++++.+..|+++..+..++.++ ...|+.+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999998876 445788899999999999999999999999999999988888898888 4555543
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.93 E-value=7.4e-24 Score=176.46 Aligned_cols=285 Identities=10% Similarity=-0.079 Sum_probs=232.0
Q ss_pred HHHHcCCHHHHHH-HHhhCCC-----C--CchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhc
Q 048799 26 GLVKWGELEYARS-LFEEMPC-----R--NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQN 97 (331)
Q Consensus 26 ~~~~~g~~~~A~~-~~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (331)
.+.-.|++++|.. .|++... | +...+..+...+...|++++|...|++++... +.+..++..+..++...
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHC
Confidence 3455689999998 8886652 2 35678899999999999999999999995532 45677899999999999
Q ss_pred CchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc-HHHHHH---------------HHH
Q 048799 98 GDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN-LVSWTS---------------IIS 161 (331)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~---------------l~~ 161 (331)
|++++|...++++++..+. +..++..++.++...|++++|...|+++....|+ ...+.. .+.
T Consensus 112 g~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (368)
T 1fch_A 112 EQELLAISALRRCLELKPD--NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG 189 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTH
T ss_pred cCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHH
Confidence 9999999999999998654 7888999999999999999999999999877553 222221 233
Q ss_pred HHHccCChHHHHHHHHHHHhccCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCH
Q 048799 162 GFAMHGMGKEAVENFERMQKVVLKP-NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240 (331)
Q Consensus 162 ~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (331)
.+...|++++|+..|+++....... +..++..+...+...|++++|...++++.+. .+.+...+..++..+...|++
T Consensus 190 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 190 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCH
Confidence 3448899999999999998854221 4788999999999999999999999999875 244678999999999999999
Q ss_pred HHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCC-----------CccHHHHHHHHhhhccCc
Q 048799 241 EQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY-----------GGDYVLMYNILAGVWRYG 308 (331)
Q Consensus 241 ~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~ 308 (331)
++|...++++... +.+...+..+..++...|++++|...++++.+..|++ ...+..++.++...|+++
T Consensus 268 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 268 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 9999999998876 4467899999999999999999999999999988877 678999999999999999
Q ss_pred chHHHHHH
Q 048799 309 DAERLRRV 316 (331)
Q Consensus 309 ~a~~~~~~ 316 (331)
+|..++++
T Consensus 348 ~A~~~~~~ 355 (368)
T 1fch_A 348 AYGAADAR 355 (368)
T ss_dssp GHHHHHTT
T ss_pred hHHHhHHH
Confidence 99988764
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=1.6e-23 Score=183.24 Aligned_cols=313 Identities=10% Similarity=-0.007 Sum_probs=182.4
Q ss_pred CccchhHHhhhcC---CchHHHHHHHHHHHHHcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChhHHHHHHHHH
Q 048799 1 FLKDGSKLFDELP---ERNLVTWNVMITGLVKWGELEYARSLFEEMP---CRNVVSWTGIIDGYTRMNRSNGALALFRRM 74 (331)
Q Consensus 1 ~~~~A~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 74 (331)
++++|++.|+++. +.+..+|..+..+|.+.|++++|+..|+++. ..+..++..+..++...|++++|+..|+.+
T Consensus 40 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 119 (537)
T 3fp2_A 40 NFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 119 (537)
T ss_dssp CCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4678999999876 4578889999999999999999999999876 235678888889999999999998887533
Q ss_pred HhccCC--------------------------------------------------------------------------
Q 048799 75 VACEYT-------------------------------------------------------------------------- 80 (331)
Q Consensus 75 ~~~~~~-------------------------------------------------------------------------- 80 (331)
...+.
T Consensus 120 -~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (537)
T 3fp2_A 120 -SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSD 198 (537)
T ss_dssp -C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHH
T ss_pred -hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHH
Confidence 21110
Q ss_pred ---------------------------------CCc--------hHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcch
Q 048799 81 ---------------------------------EPS--------EITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH 119 (331)
Q Consensus 81 ---------------------------------~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 119 (331)
.|+ ..++..+...+...|++++|...++++.+..+ +
T Consensus 199 ~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~---~ 275 (537)
T 3fp2_A 199 ALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP---T 275 (537)
T ss_dssp HHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---C
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC---C
Confidence 011 11233333444445555555555555555422 2
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 048799 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198 (331)
Q Consensus 120 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 198 (331)
..++..+...+...|++++|...|+++....| +..+|..+...+...|++++|+..|+++.... +.+...+..+...+
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 354 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLL 354 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34444555555555555555555555544433 34455555555555555666655555555432 11234455555555
Q ss_pred hccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-------cHHHHHHHHHHHhcC-
Q 048799 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-------NVVVWRTLLGACSFH- 270 (331)
Q Consensus 199 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-------~~~~~~~l~~~~~~~- 270 (331)
...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++....| ....+.....++...
T Consensus 355 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 432 (537)
T 3fp2_A 355 YKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQS 432 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHh
Confidence 5566666666666555543 122344555555556666666666666655544311 111223333444444
Q ss_pred ---------CchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhc
Q 048799 271 ---------GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320 (331)
Q Consensus 271 ---------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (331)
|++++|...++++.+..|+++..+..++.++...|++++|...+++..+.
T Consensus 433 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 433 SQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp TC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666665553
No 16
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.92 E-value=2.3e-23 Score=173.40 Aligned_cols=264 Identities=8% Similarity=-0.090 Sum_probs=222.2
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHH
Q 048799 47 NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126 (331)
Q Consensus 47 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 126 (331)
+...+..+...+.+.|++++|+..|++++... +.+..++..+..++...|++++|...|+++++..+. +..++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN--NLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CHHHHHHH
Confidence 45668999999999999999999999995532 456789999999999999999999999999998644 78899999
Q ss_pred HHHHHhcCCHhHHHHHHHHhhhcCCc-HHH----------HHHHHHHHHccCChHHHHHHHHHHHhccCC-CCHHHHHHH
Q 048799 127 IDTYAKCGCIFSALKLFEDISVERKN-LVS----------WTSIISGFAMHGMGKEAVENFERMQKVVLK-PNRVTFLSV 194 (331)
Q Consensus 127 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----------~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l 194 (331)
+.+|...|++++|...|+++....|+ ... +..+...+...|++++|++.|+++...... ++..++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 99999999999999999999876553 222 334578899999999999999999886422 157889999
Q ss_pred HHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCch
Q 048799 195 LNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNV 273 (331)
Q Consensus 195 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 273 (331)
...+...|++++|...++++.+. .+.+..++..++.+|...|++++|...|+++....| +..++..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 99999999999999999999875 344788999999999999999999999999987744 588999999999999999
Q ss_pred hHHHHHHHHHHHhhcC------------CCccHHHHHHHHhhhccCcchHHHHHH
Q 048799 274 EMGERVTRKILEMERG------------YGGDYVLMYNILAGVWRYGDAERLRRV 316 (331)
Q Consensus 274 ~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 316 (331)
++|...++++.+..|+ +...+..+..++...|+.+.+.++.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999998876 356788999999999999888776654
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.8e-22 Score=165.45 Aligned_cols=269 Identities=9% Similarity=-0.048 Sum_probs=234.5
Q ss_pred CCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHH
Q 048799 46 RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNC 125 (331)
Q Consensus 46 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 125 (331)
.+...+..++..+...|++++|+.+|+++.... +.+...+..++.++...|++++|...++++.+..+. +..++..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~ 95 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS--NPVSWFA 95 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--STHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC--CHHHHHH
Confidence 466778888999999999999999999995543 344556667888889999999999999999998554 7788899
Q ss_pred HHHHHHhcC-CHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCC
Q 048799 126 LIDTYAKCG-CIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGL 203 (331)
Q Consensus 126 l~~~~~~~g-~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 203 (331)
+...+...| ++++|...|+++....| +..+|..+...+...|++++|+..|+++.+... .+...+..+...+...|+
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhh
Confidence 999999999 99999999999988766 578899999999999999999999999987542 345667778999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC----------CccHHHHHHHHHHHhcCCch
Q 048799 204 VEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE----------ITNVVVWRTLLGACSFHGNV 273 (331)
Q Consensus 204 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~p~~~~~~~l~~~~~~~g~~ 273 (331)
+++|...++++.+. .+.+...+..++..+...|++++|...++++... +....++..+..++...|++
T Consensus 175 ~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 175 SKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 99999999999864 3447788999999999999999999999988764 22357899999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 274 EMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 274 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
++|...++++.+..|+++..+..++.++...|++++|...+++..+..
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999999887643
No 18
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=2.3e-22 Score=175.90 Aligned_cols=300 Identities=10% Similarity=-0.008 Sum_probs=244.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHH
Q 048799 16 NLVTWNVMITGLVKWGELEYARSLFEEMP---CRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92 (331)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (331)
....|..+...+.+.|++++|+..|+++. ..++.+|..+..++.+.|++++|+..|++++... +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHH
Confidence 45678889999999999999999999986 2467889999999999999999999999985532 356788999999
Q ss_pred HHhhcCchhHHHHHHhhhhhcCCCcchhH---------------------------------------------------
Q 048799 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIH--------------------------------------------------- 121 (331)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------------------------------------------------- 121 (331)
++...|++++|...|+ .....+...+..
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 9999999999999986 333222110100
Q ss_pred ---------------HHHHHHHHHH--------hcCCHhHHHHHHHHhhhcCCc--------HHHHHHHHHHHHccCChH
Q 048799 122 ---------------VSNCLIDTYA--------KCGCIFSALKLFEDISVERKN--------LVSWTSIISGFAMHGMGK 170 (331)
Q Consensus 122 ---------------~~~~l~~~~~--------~~g~~~~A~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~ 170 (331)
....+...+. ..|++++|..+|+++....|+ ..++..+...+...|+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 1112221111 125789999999999877664 235677778889999999
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhc
Q 048799 171 EAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGI 250 (331)
Q Consensus 171 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 250 (331)
+|+..|+++... .|+...+..+...+...|++++|...++++.+. .+.+..++..+...+...|++++|...++++
T Consensus 261 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 261 DAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999885 466888999999999999999999999999875 2446788999999999999999999999999
Q ss_pred ccCCc-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhccc
Q 048799 251 PSEIT-NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNA 322 (331)
Q Consensus 251 ~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (331)
....| +...+..+..++...|++++|...++++.+..|+++..+..++.++...|++++|...++++.+...
T Consensus 337 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 337 QSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 87733 5688999999999999999999999999999999999999999999999999999999999887654
No 19
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.91 E-value=2.5e-21 Score=155.50 Aligned_cols=272 Identities=10% Similarity=0.001 Sum_probs=219.6
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCCC--c--hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCc
Q 048799 24 ITGLVKWGELEYARSLFEEMPCRN--V--VSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGD 99 (331)
Q Consensus 24 ~~~~~~~g~~~~A~~~~~~~~~~~--~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 99 (331)
+.-....|+++.|+..++.....+ . .....+.++|...|+++.|+..++.. .+|+..++..+...+...++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCCc
Confidence 344567899999999998876433 2 34566788999999999999866542 45677888889999999999
Q ss_pred hhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHH
Q 048799 100 VRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179 (331)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 179 (331)
.++|++.++++...+..|.+..++..+..++...|++++|++.+++ +.+..++..++..+.+.|++++|.+.|+++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999988775565778888899999999999999999987 457788999999999999999999999999
Q ss_pred HhccCCCCHHHH---HHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-Cc
Q 048799 180 QKVVLKPNRVTF---LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-IT 255 (331)
Q Consensus 180 ~~~~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p 255 (331)
.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++++... +.
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 8864 553211 22334445669999999999999985 4568889999999999999999999999998877 44
Q ss_pred cHHHHHHHHHHHhcCCchhH-HHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHH
Q 048799 256 NVVVWRTLLGACSFHGNVEM-GERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312 (331)
Q Consensus 256 ~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 312 (331)
++.++..++..+...|+.++ +.++++++.+.+|+++.+ .....+.+.++++..
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVL 286 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHH
Confidence 68899999999999999976 678999999999998543 334455555555443
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=2.2e-22 Score=167.54 Aligned_cols=282 Identities=14% Similarity=0.080 Sum_probs=209.8
Q ss_pred cCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChhHHHH-HHHHHHhccCCCC--chHHHHHHHHHHhhcCchhHHHHH
Q 048799 30 WGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALA-LFRRMVACEYTEP--SEITILAVFPAIWQNGDVRNCQLI 106 (331)
Q Consensus 30 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 106 (331)
.+.++.+...|+.+...+.. ++...|++++|++ .|++........| +...+..+...+...|++++|...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 86 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLL 86 (368)
T ss_dssp ---------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34445555555555433322 2344588999998 8887633222222 345678899999999999999999
Q ss_pred HhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCC
Q 048799 107 HGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK 185 (331)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 185 (331)
++++++..+. +..++..++.++...|++++|...|+++....| +..++..+...+...|++++|+..++++....
T Consensus 87 ~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 162 (368)
T 1fch_A 87 FEAAVQQDPK--HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-- 162 (368)
T ss_dssp HHHHHHSCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--
T ss_pred HHHHHHhCCC--CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 9999988654 788899999999999999999999999987765 67889999999999999999999999998754
Q ss_pred CCHH-HHHH---------------HHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhh
Q 048799 186 PNRV-TFLS---------------VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASG 249 (331)
Q Consensus 186 p~~~-~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 249 (331)
|+.. .+.. .+..+...|++++|...++++.+.....++..++..++..+...|++++|...+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3221 1111 23334488999999999999987622112578899999999999999999999999
Q ss_pred cccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhccc
Q 048799 250 IPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNA 322 (331)
Q Consensus 250 ~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (331)
+... +.+...+..++.++...|++++|...++++.+..|+++..+..++.++.+.|++++|...+++..+...
T Consensus 243 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 243 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 8876 446789999999999999999999999999999999989999999999999999999999999887644
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.90 E-value=1.4e-21 Score=159.86 Aligned_cols=266 Identities=11% Similarity=-0.062 Sum_probs=215.4
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHH
Q 048799 47 NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126 (331)
Q Consensus 47 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 126 (331)
+...+..+...+...|++++|..+|+++.... +.+..++..+..++...|++++|...++++.+..+. +..++..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l 95 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--DIAVHAAL 95 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC--CHHHHHHH
Confidence 34456777788888888888888888874432 346677778888888888888888888888887543 67778888
Q ss_pred HHHHHhcCCHhHHHHHHHHhhhcCCc-HHHHHHH--------------HH-HHHccCChHHHHHHHHHHHhccCCCCHHH
Q 048799 127 IDTYAKCGCIFSALKLFEDISVERKN-LVSWTSI--------------IS-GFAMHGMGKEAVENFERMQKVVLKPNRVT 190 (331)
Q Consensus 127 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 190 (331)
+.++...|++++|...++++....|+ ...+..+ .. .+...|++++|++.++++.+.. +.+...
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 174 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQL 174 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHH
Confidence 88899999999999999888776553 3333333 22 3778889999999999998754 346788
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhc
Q 048799 191 FLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSF 269 (331)
Q Consensus 191 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~ 269 (331)
+..+...+...|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++... +.+...+..+..++..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 889999999999999999999999875 2346788999999999999999999999998776 4467889999999999
Q ss_pred CCchhHHHHHHHHHHHhhcC------------CCccHHHHHHHHhhhccCcchHHHHHHHhh
Q 048799 270 HGNVEMGERVTRKILEMERG------------YGGDYVLMYNILAGVWRYGDAERLRRVVDE 319 (331)
Q Consensus 270 ~g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (331)
.|++++|.+.++++.+..|+ ....+..++.++...|++++|..++++..+
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999888 667888999999999999999988865443
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=2.1e-21 Score=161.60 Aligned_cols=236 Identities=11% Similarity=0.001 Sum_probs=201.5
Q ss_pred chHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHH
Q 048799 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIIS 161 (331)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~ 161 (331)
+...+..+...+.+.|++++|...|+++++..+. +..++..++.++...|++++|...|+++....| +..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG--DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4556888999999999999999999999998654 788999999999999999999999999988766 5789999999
Q ss_pred HHHccCChHHHHHHHHHHHhccCCCCH-----------HHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHH
Q 048799 162 GFAMHGMGKEAVENFERMQKVVLKPNR-----------VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCL 230 (331)
Q Consensus 162 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 230 (331)
+|...|++++|+..|+++.+.. |+. ..+..+...+...|++++|..+++++.+.....++..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999998743 332 233445788999999999999999999862221268899999
Q ss_pred HHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcc
Q 048799 231 IDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGD 309 (331)
Q Consensus 231 ~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 309 (331)
+..|...|++++|.+.++++... +.+..+|..++.++...|++++|...++++.+..|+++..+..++.++...|++++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999999877 44688999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccc
Q 048799 310 AERLRRVVDERNA 322 (331)
Q Consensus 310 a~~~~~~~~~~~~ 322 (331)
|...+++..+...
T Consensus 300 A~~~~~~al~~~~ 312 (365)
T 4eqf_A 300 AVSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc
Confidence 9999999987653
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.89 E-value=8.8e-21 Score=152.29 Aligned_cols=250 Identities=8% Similarity=0.026 Sum_probs=207.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccCCCCch--HHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHh
Q 048799 55 IDGYTRMNRSNGALALFRRMVACEYTEPSE--ITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK 132 (331)
Q Consensus 55 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (331)
++.....|++..|+..+++. .. ..|+. .....+.+++...|+++.|+..++.. ..| +..++..+...+..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~-~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~-~~~a~~~la~~~~~ 77 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRV-KP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAP-ELQAVRMFAEYLAS 77 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHS-CC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCH-HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhc-cc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CCh-hHHHHHHHHHHHcC
Confidence 34566789999999999886 32 23443 35566789999999999999877652 233 78888999999999
Q ss_pred cCCHhHHHHHHHHhhhc--CC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHH
Q 048799 133 CGCIFSALKLFEDISVE--RK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209 (331)
Q Consensus 133 ~g~~~~A~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 209 (331)
.|+.++|++.++++... .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999998754 35 566777888999999999999999987 4678889999999999999999999
Q ss_pred HHHHHHHhcCCCCcHhhH---HHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 210 FFDKMVEECEVLPDIKHY---GCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
.++++.+. .|+.... ..++..+...|++++|..+|+++... +.++..++.+..++.+.|++++|+..++++++
T Consensus 152 ~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 152 ELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999876 3543211 22334445569999999999999887 55788999999999999999999999999999
Q ss_pred hhcCCCccHHHHHHHHhhhccCcc-hHHHHHHHhhcc
Q 048799 286 MERGYGGDYVLMYNILAGVWRYGD-AERLRRVVDERN 321 (331)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~ 321 (331)
.+|+++.++..++..+...|+.++ +.++++++.+..
T Consensus 229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999976 568888887644
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.88 E-value=2.9e-22 Score=164.87 Aligned_cols=279 Identities=10% Similarity=0.045 Sum_probs=137.6
Q ss_pred CccchhHHhhhcCCchHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCC
Q 048799 1 FLKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYT 80 (331)
Q Consensus 1 ~~~~A~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 80 (331)
++++|.++++++.+|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++.. .+.
T Consensus 18 ~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~a-rk~-- 90 (449)
T 1b89_A 18 NLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMA-RKK-- 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHh--
Confidence 3688999999996664 8999999999999999999999764 57779999999999999999999987766 332
Q ss_pred CCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHH
Q 048799 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSII 160 (331)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 160 (331)
.+++.+.+.++.+|.+.|+++++.++++. | +..+|..++..|...|++++|...|..+ ..|..++
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-------p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------~n~~~LA 155 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFING-------P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLA 155 (449)
T ss_dssp ------------------CHHHHTTTTTC-------C-----------------CTTTHHHHHHHT-------TCHHHHH
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHcC-------C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh-------hhHHHHH
Confidence 35577888999999999999999888852 4 6679999999999999999999999987 4799999
Q ss_pred HHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCH
Q 048799 161 SGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240 (331)
Q Consensus 161 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (331)
.++.+.|++++|++.++++ .++.+|..++.+|...|+++.|......+ . ..+.-...++..|.+.|++
T Consensus 156 ~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L----~--~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI----V--VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT----T--TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH----H--hCHhhHHHHHHHHHHCCCH
Confidence 9999999999999999987 37889999999999999999996554432 2 2333455688999999999
Q ss_pred HHHHHHHhhcccC-CccHHHHHHHHHHHhcC--CchhHHHHHHHHHHHhhc-----CCCccHHHHHHHHhhhccCcchHH
Q 048799 241 EQAEKVASGIPSE-ITNVVVWRTLLGACSFH--GNVEMGERVTRKILEMER-----GYGGDYVLMYNILAGVWRYGDAER 312 (331)
Q Consensus 241 ~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~ 312 (331)
++|..+++..... +-....|+-+..+|++- ++..+.++.|..-....| .....|..+...|.+.++++.|..
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 9999999998877 44677888887777754 455555555554444555 677899999999999999998876
Q ss_pred H
Q 048799 313 L 313 (331)
Q Consensus 313 ~ 313 (331)
.
T Consensus 304 t 304 (449)
T 1b89_A 304 T 304 (449)
T ss_dssp H
T ss_pred H
Confidence 3
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.88 E-value=1e-20 Score=154.65 Aligned_cols=267 Identities=9% Similarity=-0.043 Sum_probs=223.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhhCC---CCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHH
Q 048799 16 NLVTWNVMITGLVKWGELEYARSLFEEMP---CRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFP 92 (331)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (331)
+...+..+...+...|++++|..+|+++. ..+...+..+...+...|++++|...++++... .+.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHH
Confidence 44567788899999999999999999876 246678889999999999999999999998553 2356778899999
Q ss_pred HHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHH--------------HH-HHHhcCCHhHHHHHHHHhhhcCC-cHHHH
Q 048799 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL--------------ID-TYAKCGCIFSALKLFEDISVERK-NLVSW 156 (331)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~~~-~~~~~ 156 (331)
++...|++++|...++++.+..+. +...+..+ .. .+...|++++|...++++....| +..++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ--YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT--TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc--cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Confidence 999999999999999999987554 33344333 33 47788999999999999987765 67889
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHh
Q 048799 157 TSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236 (331)
Q Consensus 157 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 236 (331)
..+...+...|++++|++.++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+...+..+...+..
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998753 345788899999999999999999999999875 23467889999999999
Q ss_pred cCCHHHHHHHHhhcccCCc-------------cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcC
Q 048799 237 AGRLEQAEKVASGIPSEIT-------------NVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 289 (331)
Q Consensus 237 ~g~~~~A~~~~~~~~~~~p-------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 289 (331)
.|++++|.+.++++....| +...|..+..++...|++++|..+++++.+..|+
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 9999999999999877633 4788999999999999999999999988775443
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.86 E-value=3.2e-22 Score=164.62 Aligned_cols=252 Identities=12% Similarity=0.057 Sum_probs=118.5
Q ss_pred HHcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHH
Q 048799 28 VKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIH 107 (331)
Q Consensus 28 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 107 (331)
-+.|++++|.++++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4678899999999999655 48999999999999999999999764 67779999999999999999999998
Q ss_pred hhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCC
Q 048799 108 GYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN 187 (331)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 187 (331)
+..++. .+ ++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|...|..+
T Consensus 85 ~~ark~--~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 85 QMARKK--AR-ESYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-----CC----------------CTTTHHHHHHHT--------
T ss_pred HHHHHh--Cc-cchhHHHHHHHHHHhCCHHHHHHHHc-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 888875 33 56778899999999999999998875 477789999999999999999999999977
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHH
Q 048799 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC 267 (331)
Q Consensus 188 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~ 267 (331)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+.. ++.-...++..|
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~---~ad~l~~lv~~Y 217 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HADELEELINYY 217 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTT---CHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHh---CHhhHHHHHHHH
Confidence 35999999999999999999999987 2789999999999999999999888777653 333355689999
Q ss_pred hcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHH
Q 048799 268 SFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRV 316 (331)
Q Consensus 268 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 316 (331)
.+.|++++|+.+++..+.+++.+...|..++.+|++. +.++..+.++.
T Consensus 218 ek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~ 265 (449)
T 1b89_A 218 QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLEL 265 (449)
T ss_dssp HHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 9999999999999999998888888899999888865 33444444443
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=3.3e-19 Score=153.40 Aligned_cols=309 Identities=11% Similarity=-0.065 Sum_probs=210.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhhCC-------C---C-CchhHHHHHHHHHh--cCChhHHHHHHHHHHhccCCCC
Q 048799 16 NLVTWNVMITGLVKWGELEYARSLFEEMP-------C---R-NVVSWTGIIDGYTR--MNRSNGALALFRRMVACEYTEP 82 (331)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~---~-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~ 82 (331)
...+|+.+..+|...|++++|...+++.. . + ...++..+..++.. .+++++|+..|++.+... |.
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~ 170 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PK 170 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TT
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CC
Confidence 46789999999999999999999888753 1 1 23456666666554 457999999999986533 23
Q ss_pred chHHHHHHHHH---HhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHh----cCCHhHHHHHHHHhhhcCC-cHH
Q 048799 83 SEITILAVFPA---IWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK----CGCIFSALKLFEDISVERK-NLV 154 (331)
Q Consensus 83 ~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~-~~~ 154 (331)
++..+..+..+ +...++.++|++.++++++..+. +..++..+...+.. .|++++|.+.+++.....| +..
T Consensus 171 ~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~--~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~ 248 (472)
T 4g1t_A 171 NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD--NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD 248 (472)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS--CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHH
T ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc--chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHH
Confidence 34455555444 34567888999999999988654 66666666655554 4678899999999887765 577
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhcc-------------------CChHHHHHHHHHHH
Q 048799 155 SWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHG-------------------GLVEEGLKFFDKMV 215 (331)
Q Consensus 155 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~ 215 (331)
++..+...|...|++++|+..+++..+.. +-+..++..+..+|... +..+.|...+++..
T Consensus 249 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 327 (472)
T 4g1t_A 249 VLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD 327 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 89999999999999999999999998753 23456666666555322 33567888888877
Q ss_pred HhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHH----HHHHHHH-HHhcCCchhHHHHHHHHHHHh----
Q 048799 216 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV----VWRTLLG-ACSFHGNVEMGERVTRKILEM---- 286 (331)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~l~~-~~~~~g~~~~a~~~~~~~~~~---- 286 (331)
+. .+.+...+..+...|...|++++|...|+++....|+.. .+..+.. .+...|++++|+..|++++++
T Consensus 328 ~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~ 405 (472)
T 4g1t_A 328 EA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS 405 (472)
T ss_dssp HH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred hc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 64 234667888899999999999999999999876633322 2333333 345788999999988887653
Q ss_pred --------------------hcCCCccHHHHHHHHhhhccCcchHHHHHHHhhccccCCCCCCCC
Q 048799 287 --------------------ERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFPGRSLV 331 (331)
Q Consensus 287 --------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~sw~ 331 (331)
+|+++.++..++.+|...|++++|++.+++..+.+.......+|+
T Consensus 406 ~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 406 REKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 577788999999999999999999999999999887777778875
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.7e-19 Score=142.31 Aligned_cols=226 Identities=8% Similarity=-0.020 Sum_probs=154.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCc--ch---hHHH
Q 048799 49 VSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA--FH---IHVS 123 (331)
Q Consensus 49 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~---~~~~ 123 (331)
..|..+...+...|++++|+..|+++.... .+..++..+..++...|++++|...++++++..+.. .. ..++
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 456677777777888888888887774433 566677777777777778888877777777653221 00 4667
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCC
Q 048799 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGL 203 (331)
Q Consensus 124 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 203 (331)
..++.++...|++++|...|+++....|+.. .+...|++++|+..++++.... +.+...+..+...+...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTAD-------ILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-------HHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchhH-------HHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 7777777777777777777777776666532 3445566777777777776532 1234556667777777777
Q ss_pred hHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHH
Q 048799 204 VEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRK 282 (331)
Q Consensus 204 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 282 (331)
+++|...++++.+. .+.+...+..+...+...|++++|...++++... +.+...|..+..++...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77777777777664 2335666777777777777777777777777655 33466677777777777777777777777
Q ss_pred HHHhh
Q 048799 283 ILEME 287 (331)
Q Consensus 283 ~~~~~ 287 (331)
+.+..
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 77766
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.6e-19 Score=141.21 Aligned_cols=224 Identities=10% Similarity=-0.036 Sum_probs=156.4
Q ss_pred hHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc--------HHH
Q 048799 84 EITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN--------LVS 155 (331)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~ 155 (331)
...+..+...+...|++++|...++++++.. . +..++..++.++...|++++|...|+++....|+ ..+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--K-DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--C-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--c-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 3456667777777777777777777777766 3 6667777777777777777777777777655332 466
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHH
Q 048799 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG 235 (331)
Q Consensus 156 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 235 (331)
|..+...+...|++++|+..|+++... .|+.. .+...|++++|...++++... .+.+...+..+...+.
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHH
Confidence 777777777777777777777777663 34432 344556677777777777653 2224566677777777
Q ss_pred hcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHH
Q 048799 236 RAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLR 314 (331)
Q Consensus 236 ~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 314 (331)
..|++++|...++++... +.+...+..+..++...|++++|...++++.+..|+++..+..++.++...|++++|...+
T Consensus 151 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777777777777777665 3356677777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhhcc
Q 048799 315 RVVDERN 321 (331)
Q Consensus 315 ~~~~~~~ 321 (331)
++..+..
T Consensus 231 ~~a~~~~ 237 (258)
T 3uq3_A 231 DAARTKD 237 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 7766543
No 30
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.84 E-value=2.8e-19 Score=142.59 Aligned_cols=246 Identities=9% Similarity=-0.087 Sum_probs=197.1
Q ss_pred HhcCChhHHHHHHHHHHhccCCC--CchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCH
Q 048799 59 TRMNRSNGALALFRRMVACEYTE--PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136 (331)
Q Consensus 59 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 136 (331)
...|++++|+..|+++....... .+..++..+..++...|++++|...++++++..+. +..++..++.++...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHccCH
Confidence 34588999999999985542211 24567888999999999999999999999988654 778899999999999999
Q ss_pred hHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 048799 137 FSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215 (331)
Q Consensus 137 ~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 215 (331)
++|...|+++....| +..++..+...|...|++++|+..|+++.+.. |+.......+..+...|++++|...+++..
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999988765 57889999999999999999999999998743 554444455555677799999999998888
Q ss_pred HhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-----cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCC
Q 048799 216 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-----NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 290 (331)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 290 (331)
.. .+++...+ .++..+...++.++|...+..+....| +...+..+..++...|++++|...++++.+.+|++
T Consensus 172 ~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 172 EK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred hc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 75 23444444 467778888999999999999887733 25788889999999999999999999999988866
Q ss_pred CccHHHHHHHHhhhccCcchHHHH
Q 048799 291 GGDYVLMYNILAGVWRYGDAERLR 314 (331)
Q Consensus 291 ~~~~~~l~~~~~~~g~~~~a~~~~ 314 (331)
+.....++...|++++|.+.+
T Consensus 249 ---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 ---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---CHHHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHHHhhHHHH
Confidence 344467788889999988776
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.83 E-value=7.8e-19 Score=134.93 Aligned_cols=197 Identities=14% Similarity=-0.042 Sum_probs=109.7
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 197 (331)
+...+..+...+.+.|++++|...|+++....| +...+..+..++.+.|++++|+..|++..+.. +.+...+..+...
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 334444444455555555555555555444433 34444444455555555555555555544422 1123344444444
Q ss_pred Hhcc-----------CChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHH
Q 048799 198 CSHG-----------GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGA 266 (331)
Q Consensus 198 ~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~ 266 (331)
+... |++++|...+++..+. -+.+...+..+...+...|++++|...|+++.....++..+..+..+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~ 160 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 4444 7777777777777654 12255666677777777777777777777765433456667777777
Q ss_pred HhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHh
Q 048799 267 CSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVD 318 (331)
Q Consensus 267 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (331)
+...|++++|...++++.+.+|+++..+..++.++...|++++|...+++..
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777888888888888877777777777777778888888888877776653
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.83 E-value=2.3e-18 Score=137.06 Aligned_cols=249 Identities=11% Similarity=-0.084 Sum_probs=144.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcc-hhHHHHHHHHH
Q 048799 51 WTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAF-HIHVSNCLIDT 129 (331)
Q Consensus 51 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~ 129 (331)
+......+...|++++|+..|++++... +.+...+..+..++...|++++|+..++++++.+..+. ....+..++.+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3444555566666666666666653322 12233555555566666666666666666665322110 12235566666
Q ss_pred HHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHH
Q 048799 130 YAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGL 208 (331)
Q Consensus 130 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 208 (331)
+...|++++|...|+++....| +..+|..+...|...|++++|+..|++..+. .+.+...+..+...+...+++++|.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666655544 3456666666666666666666666666553 1223444554552233344666777
Q ss_pred HHHHHHHHhcCCCCcHhhHHHHHHHHHhcCC---HHHHHHHHhhcccC---Ccc------HHHHHHHHHHHhcCCchhHH
Q 048799 209 KFFDKMVEECEVLPDIKHYGCLIDMLGRAGR---LEQAEKVASGIPSE---ITN------VVVWRTLLGACSFHGNVEMG 276 (331)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~---~p~------~~~~~~l~~~~~~~g~~~~a 276 (331)
..|+++.+. .+.+...+..+...+...|+ +++|...++++... .|+ ...|..+...|...|++++|
T Consensus 163 ~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 163 SSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 766666654 12235555556666666665 55566655555443 122 25677788888889999999
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHhhh
Q 048799 277 ERVTRKILEMERGYGGDYVLMYNILAGV 304 (331)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 304 (331)
.+.++++.+.+|+++.....+.......
T Consensus 241 ~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 9999999998898877666665554433
No 33
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=5.6e-17 Score=140.16 Aligned_cols=300 Identities=11% Similarity=0.023 Sum_probs=139.5
Q ss_pred cchhHHhhhcC-CchHHHHHHHHHHHHH----cCCHHHHHHHHhhCCC-CCchhHHHHHHHHHh----cCChhHHHHHHH
Q 048799 3 KDGSKLFDELP-ERNLVTWNVMITGLVK----WGELEYARSLFEEMPC-RNVVSWTGIIDGYTR----MNRSNGALALFR 72 (331)
Q Consensus 3 ~~A~~~~~~~~-~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 72 (331)
++|.+.|++.. ..+..++..|...|.. .+++++|..+|++..+ .++..+..|...|.. .+++++|+..|+
T Consensus 60 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 139 (490)
T 2xm6_A 60 TQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFR 139 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 34444444433 2244445555555555 5555555555555432 233444445555544 455555555555
Q ss_pred HHHhccCCCCchHHHHHHHHHHhh----cCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHh----cCCHhHHHHHHH
Q 048799 73 RMVACEYTEPSEITILAVFPAIWQ----NGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK----CGCIFSALKLFE 144 (331)
Q Consensus 73 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 144 (331)
+... .+ +...+..+...|.. .++.++|.+.|++..+.+ +...+..|...|.. .+++++|...|+
T Consensus 140 ~a~~-~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 211 (490)
T 2xm6_A 140 LAAE-QG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG----NVWSCNQLGYMYSRGLGVERNDAISAQWYR 211 (490)
T ss_dssp HHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHH-CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 5422 11 23344444444443 445555555555544432 23334444444444 444555555544
Q ss_pred HhhhcCCcHHHHHHHHHHHH------------------------------------c----cCChHHHHHHHHHHHhccC
Q 048799 145 DISVERKNLVSWTSIISGFA------------------------------------M----HGMGKEAVENFERMQKVVL 184 (331)
Q Consensus 145 ~~~~~~~~~~~~~~l~~~~~------------------------------------~----~~~~~~a~~~~~~m~~~~~ 184 (331)
+.... .+..++..+...|. . .+++++|+..|++..+.|
T Consensus 212 ~a~~~-~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~- 289 (490)
T 2xm6_A 212 KSATS-GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG- 289 (490)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-
T ss_pred HHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-
Confidence 44322 12233333333333 3 344444444444443322
Q ss_pred CCCHHHHHHHHHHHhcc-----CChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcC---CHHHHHHHHhhcccCCcc
Q 048799 185 KPNRVTFLSVLNACSHG-----GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG---RLEQAEKVASGIPSEITN 256 (331)
Q Consensus 185 ~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~ 256 (331)
+...+..+...|... +++++|...|++..+. + +...+..+...|...| ++++|.++|+++.+. .+
T Consensus 290 --~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-~~ 362 (490)
T 2xm6_A 290 --NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-GE 362 (490)
T ss_dssp --CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-TC
T ss_pred --CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-CC
Confidence 222333344444333 4455555555544443 2 2233444444444433 455555555555443 34
Q ss_pred HHHHHHHHHHHhc----CCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhh----hccCcchHHHHHHHhhcc
Q 048799 257 VVVWRTLLGACSF----HGNVEMGERVTRKILEMERGYGGDYVLMYNILAG----VWRYGDAERLRRVVDERN 321 (331)
Q Consensus 257 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 321 (331)
+..+..+...|.. .+++++|...|+++.+. +++..+..++.+|.. .++.++|...+++..+.+
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 4455555555555 55566666666665542 234455556666555 556666666666655544
No 34
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=5.8e-17 Score=140.08 Aligned_cols=271 Identities=10% Similarity=0.016 Sum_probs=198.9
Q ss_pred cchhHHhhhcC-CchHHHHHHHHHHHHH----cCCHHHHHHHHhhCC-CCCchhHHHHHHHHHh----cCChhHHHHHHH
Q 048799 3 KDGSKLFDELP-ERNLVTWNVMITGLVK----WGELEYARSLFEEMP-CRNVVSWTGIIDGYTR----MNRSNGALALFR 72 (331)
Q Consensus 3 ~~A~~~~~~~~-~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 72 (331)
++|.+.|++.. ..+..++..|...|.. .+++++|...|++.. ..+..++..|...|.. .+++++|...|+
T Consensus 132 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 211 (490)
T 2xm6_A 132 AESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYR 211 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 44555555544 2244455555555555 556666666666544 2345566666666666 677777777777
Q ss_pred HHHhccCCCCchHHHHHHHHHHhh----cCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHh----cCCHhHHHHHHH
Q 048799 73 RMVACEYTEPSEITILAVFPAIWQ----NGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK----CGCIFSALKLFE 144 (331)
Q Consensus 73 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 144 (331)
+... . .+...+..+...+.. .++.++|..+|++..+.+ +...+..+...|.. .++.++|...|+
T Consensus 212 ~a~~-~---~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 212 KSAT-S---GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG----NSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 7632 2 234556666666654 677888888888777664 34456667777777 788999999998
Q ss_pred HhhhcCCcHHHHHHHHHHHHcc-----CChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccC---ChHHHHHHHHHHHH
Q 048799 145 DISVERKNLVSWTSIISGFAMH-----GMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG---LVEEGLKFFDKMVE 216 (331)
Q Consensus 145 ~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~ 216 (331)
+.... .+..++..+...|... +++++|+..|++..+.| +...+..+...|...| +.++|.++|++..+
T Consensus 284 ~a~~~-~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 284 KSAEQ-GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 88644 3556777788888877 89999999999998865 4456777777777766 78999999999987
Q ss_pred hcCCCCcHhhHHHHHHHHHh----cCCHHHHHHHHhhcccCCccHHHHHHHHHHHhc----CCchhHHHHHHHHHHHhhc
Q 048799 217 ECEVLPDIKHYGCLIDMLGR----AGRLEQAEKVASGIPSEITNVVVWRTLLGACSF----HGNVEMGERVTRKILEMER 288 (331)
Q Consensus 217 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 288 (331)
. .+...+..+...|.. .+++++|.++|+++.+. .++..+..+...|.. .+++++|...|+++.+.+|
T Consensus 360 ~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 360 K----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp T----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred C----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 5 367788889999988 89999999999998876 467788889998887 8999999999999999887
Q ss_pred CC
Q 048799 289 GY 290 (331)
Q Consensus 289 ~~ 290 (331)
+.
T Consensus 435 ~~ 436 (490)
T 2xm6_A 435 NL 436 (490)
T ss_dssp CH
T ss_pred CC
Confidence 63
No 35
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=2.3e-17 Score=144.04 Aligned_cols=316 Identities=10% Similarity=0.023 Sum_probs=217.5
Q ss_pred ccchhHHhhhcC---CchHHHHHHHHHHHHHcCCHHHHHHHHhhCC--CCCchhHHHHHHH-HHhcCChhHHHH----HH
Q 048799 2 LKDGSKLFDELP---ERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRNVVSWTGIIDG-YTRMNRSNGALA----LF 71 (331)
Q Consensus 2 ~~~A~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~-~~~~~~~~~a~~----~~ 71 (331)
+++|.++|+++. +.+...|..++..+.+.|++++|..+|+++. .|++..|..++.. ....|++++|.+ +|
T Consensus 28 ~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~ 107 (530)
T 2ooe_A 28 IDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAY 107 (530)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHHH
Confidence 466778888765 3366778888888888888888888888876 3666666666643 234566666654 66
Q ss_pred HHHHhccCCCC-chHHHHHHHHHHhh---------cCchhHHHHHHhhhhhcCCCcchhHHHHHHHHH------------
Q 048799 72 RRMVACEYTEP-SEITILAVFPAIWQ---------NGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDT------------ 129 (331)
Q Consensus 72 ~~~~~~~~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~------------ 129 (331)
++.+...|..| +...|...+..... .|+++.|..+|+++++..... ....|......
T Consensus 108 ~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~-~~~~~~~~~~~e~~~~~~~~~~~ 186 (530)
T 2ooe_A 108 DFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMIN-IEQLWRDYNKYEEGINIHLAKKM 186 (530)
T ss_dssp HHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTT-HHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhh-HHHHHHHHHHHHHhhchhHHHHH
Confidence 66544434433 34556655554433 678888888888887732111 12222211110
Q ss_pred -----------------------------------------------------HHhc----CCH----hHHHHHHHHhhh
Q 048799 130 -----------------------------------------------------YAKC----GCI----FSALKLFEDISV 148 (331)
Q Consensus 130 -----------------------------------------------------~~~~----g~~----~~A~~~~~~~~~ 148 (331)
.... ++. .++..+|+++..
T Consensus 187 l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~ 266 (530)
T 2ooe_A 187 IEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL 266 (530)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHH
Confidence 0000 111 244456666655
Q ss_pred cCC-cHHHHHHHHHHHHc-------cCChH-------HHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 048799 149 ERK-NLVSWTSIISGFAM-------HGMGK-------EAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDK 213 (331)
Q Consensus 149 ~~~-~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 213 (331)
..| +...|..++..+.+ .|+++ +|..+|++..+.-.+.+...+..++..+.+.|++++|..+|++
T Consensus 267 ~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~ 346 (530)
T 2ooe_A 267 VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNR 346 (530)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 544 56677777777664 68876 8999999887522333577888888888899999999999999
Q ss_pred HHHhcCCCCc-H-hhHHHHHHHHHhcCCHHHHHHHHhhcccCCcc-HHHHHHHHHH-HhcCCchhHHHHHHHHHHHhhcC
Q 048799 214 MVEECEVLPD-I-KHYGCLIDMLGRAGRLEQAEKVASGIPSEITN-VVVWRTLLGA-CSFHGNVEMGERVTRKILEMERG 289 (331)
Q Consensus 214 ~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~ 289 (331)
+.+. .|+ . ..|..++..+.+.|++++|.++|+++....|. ...|...+.. +...|++++|..+|+++++..|+
T Consensus 347 al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~ 423 (530)
T 2ooe_A 347 LLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD 423 (530)
T ss_dssp HHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred HhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC
Confidence 9864 443 2 57888888888899999999999998887332 3333332222 33589999999999999999999
Q ss_pred CCccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 290 YGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
++..+..++..+.+.|+.++|..+|++....+
T Consensus 424 ~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 424 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 88899999999999999999999999987753
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.82 E-value=2.9e-18 Score=131.78 Aligned_cols=195 Identities=13% Similarity=0.070 Sum_probs=86.8
Q ss_pred chHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHH
Q 048799 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIIS 161 (331)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~ 161 (331)
+...+..+...+...|++++|...++++++..+. +..++..+..++.+.|++++|+..|+++....| +...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ--DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 3344444444444444444444444444444222 444444444444445555555554444444433 2344444444
Q ss_pred HHHcc-----------CChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHH
Q 048799 162 GFAMH-----------GMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCL 230 (331)
Q Consensus 162 ~~~~~-----------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 230 (331)
++... |++++|+..|++..+.. +-+...+..+..++...|++++|...|+++.+. . .+...+..+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~l 157 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHHHH
Confidence 44444 55555555555554422 112344444555555555555555555555544 3 344455555
Q ss_pred HHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 048799 231 IDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMGERVTRKI 283 (331)
Q Consensus 231 ~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 283 (331)
..+|...|++++|...|+++....| +...+..+..++...|++++|...+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5555555555555555555544422 3445555555555555555555555543
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=4e-20 Score=164.22 Aligned_cols=152 Identities=15% Similarity=0.100 Sum_probs=125.2
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc-----CCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHH
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVE-----RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLS 193 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 193 (331)
...+|++||++|++.|++++|.++|.+|.+. .||+.+||+||.+|++.|++++|.++|++|...|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 4568999999999999999999999887642 69999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCh-HHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC---CccHHHHHHHHHHHhc
Q 048799 194 VLNACSHGGLV-EEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE---ITNVVVWRTLLGACSF 269 (331)
Q Consensus 194 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~ 269 (331)
+|.++|+.|+. ++|.++|++|.+. |+.||..+|+.++....+.+-++.+.++...+... .|...+...|.+.|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 99999999985 7899999999999 99999999999998777654444444443333322 1123444455666665
Q ss_pred CC
Q 048799 270 HG 271 (331)
Q Consensus 270 ~g 271 (331)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 55
No 38
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.81 E-value=2.5e-17 Score=129.52 Aligned_cols=205 Identities=8% Similarity=-0.053 Sum_probs=149.9
Q ss_pred hHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHH
Q 048799 84 EITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISG 162 (331)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 162 (331)
...+..+...+...|++++|...++++.+..+. +..++..++.++...|++++|...|+++....| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS--SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 345666666777777777777777777766433 566777777778888888888888877766644 56677777777
Q ss_pred HHccCChHHHHHHHHHHHhccCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHH
Q 048799 163 FAMHGMGKEAVENFERMQKVVLKP-NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241 (331)
Q Consensus 163 ~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 241 (331)
+...|++++|++.++++...+..| +...+..+...+...|++++|...++++.+. . +.+...+..++..+...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-N-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHcCCHH
Confidence 778888888888888776632334 4556677777778888888888888887764 2 335677777888888888888
Q ss_pred HHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCc
Q 048799 242 QAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG 292 (331)
Q Consensus 242 ~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 292 (331)
+|...++.+... +.+...+..+...+...|++++|.+.++++.+..|+++.
T Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 888888887766 445667777778888888888888888888887777643
No 39
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.81 E-value=1.1e-17 Score=138.68 Aligned_cols=249 Identities=10% Similarity=-0.023 Sum_probs=203.1
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCc-hhHHHHHHhhhhhcCCCcchhHHHHHH
Q 048799 48 VVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGD-VRNCQLIHGYGEKRGFNAFHIHVSNCL 126 (331)
Q Consensus 48 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l 126 (331)
...|+.+...+...|++++|+..+++++... +-+...|..+..++...|+ +++|+..++++++..+. +..+|..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~--~~~a~~~~ 172 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK--NYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC--CHHHHHHH
Confidence 3567888888999999999999999985532 3456788888999999996 99999999999998655 78889999
Q ss_pred HHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhc-cCCh
Q 048799 127 IDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH-GGLV 204 (331)
Q Consensus 127 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~ 204 (331)
..++...|++++|+..|+++....| +..+|..+..++...|++++|+..|+++++.. +-+...|+.+..++.. .|..
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999988766 67889999999999999999999999998854 2356788888888888 5655
Q ss_pred HHH-----HHHHHHHHHhcCCCCcHhhHHHHHHHHHhcC--CHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCC-----
Q 048799 205 EEG-----LKFFDKMVEECEVLPDIKHYGCLIDMLGRAG--RLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHG----- 271 (331)
Q Consensus 205 ~~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g----- 271 (331)
++| +..++++++. -+-+...|..+...+...| ++++|.+.+.++ .. ..+...+..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 777 4888888864 2336778888888888888 689999999888 44 456788888888888764
Q ss_pred ----chhHHHHHHHHH-HHhhcCCCccHHHHHHHHhhh
Q 048799 272 ----NVEMGERVTRKI-LEMERGYGGDYVLMYNILAGV 304 (331)
Q Consensus 272 ----~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 304 (331)
..++|.++++++ .+.+|.....|..++..+...
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 358999999999 888998888888887776544
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.81 E-value=2.6e-18 Score=134.28 Aligned_cols=215 Identities=11% Similarity=0.000 Sum_probs=152.8
Q ss_pred CchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHH
Q 048799 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSII 160 (331)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~ 160 (331)
.....+..+...+...|++++|...++++++..+. +..++..++.++...|++++|...|+++....| +..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE--DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 34456666777777888888888888888776443 667777888888888888888888888876654 567788888
Q ss_pred HHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCH
Q 048799 161 SGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240 (331)
Q Consensus 161 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (331)
..+...|++++|++.++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCH
Confidence 88888888888888888887653 345667777888888888899998888888764 234677788888888889999
Q ss_pred HHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 048799 241 EQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301 (331)
Q Consensus 241 ~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (331)
++|...++++... +.+..++..+..++...|++++|...++++.+..|+++..+..+....
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 9999998888766 345778888889999999999999999999998888866666554443
No 41
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.80 E-value=5.4e-18 Score=142.74 Aligned_cols=296 Identities=14% Similarity=0.043 Sum_probs=229.8
Q ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHhhCC--CCC-----chhHHHHHHHHHhcCChhHHHHHHHHHHhcc---CCCC-
Q 048799 14 ERNLVTWNVMITGLVKWGELEYARSLFEEMP--CRN-----VVSWTGIIDGYTRMNRSNGALALFRRMVACE---YTEP- 82 (331)
Q Consensus 14 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~- 82 (331)
++....+......+...|++++|...|++.. .|+ ...|..+...+...|++++|...++++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 3456677788899999999999999999876 233 3578889999999999999999999874321 1112
Q ss_pred chHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCC----cchhHHHHHHHHHHHhcCC--------------------HhH
Q 048799 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN----AFHIHVSNCLIDTYAKCGC--------------------IFS 138 (331)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~--------------------~~~ 138 (331)
...++..+...+...|++++|...++++.+.... +....++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2457788889999999999999999988765221 1124578889999999999 999
Q ss_pred HHHHHHHhhhc------CC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccC-CCC----HHHHHHHHHHHhccCChHH
Q 048799 139 ALKLFEDISVE------RK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVL-KPN----RVTFLSVLNACSHGGLVEE 206 (331)
Q Consensus 139 A~~~~~~~~~~------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~ 206 (331)
|...+++.... .+ ...++..+...+...|++++|+..+++...... .++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999887654 11 245788888999999999999999998875321 122 2478888899999999999
Q ss_pred HHHHHHHHHHhcCCCCc----HhhHHHHHHHHHhcCCHHHHHHHHhhcccC---Ccc----HHHHHHHHHHHhcCCchhH
Q 048799 207 GLKFFDKMVEECEVLPD----IKHYGCLIDMLGRAGRLEQAEKVASGIPSE---ITN----VVVWRTLLGACSFHGNVEM 275 (331)
Q Consensus 207 a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~l~~~~~~~g~~~~ 275 (331)
|...+++..+...-.++ ..++..+...|...|++++|...++++... .++ ..++..+...+...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999998754111111 557788899999999999999999988765 222 5678888999999999999
Q ss_pred HHHHHHHHHHhhcC------CCccHHHHHHHHhhhccCcc
Q 048799 276 GERVTRKILEMERG------YGGDYVLMYNILAGVWRYGD 309 (331)
Q Consensus 276 a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~ 309 (331)
|...++++.+..+. ...++..++.++...|+...
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 99999999986432 23567778889988887744
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.80 E-value=3.6e-17 Score=130.11 Aligned_cols=247 Identities=9% Similarity=-0.018 Sum_probs=195.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhCC--C-CCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCc--hHHHHHHH
Q 048799 17 LVTWNVMITGLVKWGELEYARSLFEEMP--C-RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPS--EITILAVF 91 (331)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~ 91 (331)
...+......+...|++++|+..|++.. . .+...+..+..++...|++++|+..++++.. .+..|+ ..+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence 3445667888999999999999999875 2 3556899999999999999999999999955 332222 33588899
Q ss_pred HHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChH
Q 048799 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGK 170 (331)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 170 (331)
.++...|++++|+..++++.+..+. +..++..++.+|...|++++|...|+++....| +...|..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTT--RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998654 678899999999999999999999999988766 5677888873444456999
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHhccCC---hHHHHHHHHHHHHhcCCCCc------HhhHHHHHHHHHhcCCHH
Q 048799 171 EAVENFERMQKVVLKPNRVTFLSVLNACSHGGL---VEEGLKFFDKMVEECEVLPD------IKHYGCLIDMLGRAGRLE 241 (331)
Q Consensus 171 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~ 241 (331)
+|++.|+++.+.. +.+...+..+...+...|+ +++|...++++.+...-.|+ ...+..+...|...|+++
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999998853 2346777778888888888 88899999998876333344 257788899999999999
Q ss_pred HHHHHHhhcccCCc-cHHHHHHHHHHH
Q 048799 242 QAEKVASGIPSEIT-NVVVWRTLLGAC 267 (331)
Q Consensus 242 ~A~~~~~~~~~~~p-~~~~~~~l~~~~ 267 (331)
+|.+.++++....| +...+..+....
T Consensus 239 ~A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 239 KADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 99999999987744 455555554443
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.80 E-value=4.7e-17 Score=125.51 Aligned_cols=207 Identities=9% Similarity=-0.096 Sum_probs=141.0
Q ss_pred chHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHH
Q 048799 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIIS 161 (331)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~ 161 (331)
+...+..+...+...|++++|...++++.+..+. +..++..++.++...|++++|...|+++....| +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK--NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 3455666666677777777777777776665433 556666777777777777777777777765544 4566777777
Q ss_pred HHHcc-CChHHHHHHHHHHHhccCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCC
Q 048799 162 GFAMH-GMGKEAVENFERMQKVVLKPN-RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239 (331)
Q Consensus 162 ~~~~~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 239 (331)
.+... |++++|+..++++.+.+..|+ ...+..+...+...|++++|...++++.+. .+.+...+..++..+...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCC
Confidence 77777 777777777777766322232 456666777777777777777777777664 22346667777777777777
Q ss_pred HHHHHHHHhhcccC-C-ccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCcc
Q 048799 240 LEQAEKVASGIPSE-I-TNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD 293 (331)
Q Consensus 240 ~~~A~~~~~~~~~~-~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 293 (331)
+++|...++++... + .+...+..+...+...|+.+.+..+++.+.+..|+++..
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 77777777777665 3 456666666667777777777777777777777776443
No 44
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.80 E-value=8.2e-18 Score=141.63 Aligned_cols=274 Identities=12% Similarity=0.029 Sum_probs=215.9
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCc--hHHHHHHHHHHhhcCchhHHHHHHhhhhhc----CCCcchh
Q 048799 47 NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPS--EITILAVFPAIWQNGDVRNCQLIHGYGEKR----GFNAFHI 120 (331)
Q Consensus 47 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~ 120 (331)
....+..+...+...|++++|...|++++......|. ...+..+...+...|++++|...++++.+. +..+...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 4456677888899999999999999999654322121 356788889999999999999999987654 3333346
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC---c----HHHHHHHHHHHHccCC--------------------hHHHH
Q 048799 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERK---N----LVSWTSIISGFAMHGM--------------------GKEAV 173 (331)
Q Consensus 121 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~----~~~~~~l~~~~~~~~~--------------------~~~a~ 173 (331)
.++..+...+...|++++|...++++....+ + ..++..+...|...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 7888899999999999999999998876522 1 4578888899999999 99999
Q ss_pred HHHHHHHhcc--C--CC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCc----HhhHHHHHHHHHhcCCHHHHH
Q 048799 174 ENFERMQKVV--L--KP-NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD----IKHYGCLIDMLGRAGRLEQAE 244 (331)
Q Consensus 174 ~~~~~m~~~~--~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~ 244 (331)
..+++..... . .| ...++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 9998876521 1 11 2356788888999999999999999998764211122 347888899999999999999
Q ss_pred HHHhhcccC---Ccc----HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCC------CccHHHHHHHHhhhccCcchH
Q 048799 245 KVASGIPSE---ITN----VVVWRTLLGACSFHGNVEMGERVTRKILEMERGY------GGDYVLMYNILAGVWRYGDAE 311 (331)
Q Consensus 245 ~~~~~~~~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~ 311 (331)
..++++... .++ ..++..+...+...|++++|...++++.+..+.. ...+..++.++...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999988755 111 5678888999999999999999999999865543 347788999999999999999
Q ss_pred HHHHHHhhc
Q 048799 312 RLRRVVDER 320 (331)
Q Consensus 312 ~~~~~~~~~ 320 (331)
..+++..+.
T Consensus 328 ~~~~~al~~ 336 (406)
T 3sf4_A 328 HFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887654
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.79 E-value=2.7e-16 Score=125.22 Aligned_cols=227 Identities=11% Similarity=-0.047 Sum_probs=178.6
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhh----cCchhHHHHHHhhhhhcCCCcchhHH
Q 048799 47 NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQ----NGDVRNCQLIHGYGEKRGFNAFHIHV 122 (331)
Q Consensus 47 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (331)
++.++..+...+...|++++|...|++... +.+...+..+...+.. .+++++|...|++..+.+ +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHH
Confidence 556777888888888999999999988844 2345677778888888 888999999998888775 4566
Q ss_pred HHHHHHHHHh----cCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHc----cCChHHHHHHHHHHHhccCCCCHHHHHHH
Q 048799 123 SNCLIDTYAK----CGCIFSALKLFEDISVERKNLVSWTSIISGFAM----HGMGKEAVENFERMQKVVLKPNRVTFLSV 194 (331)
Q Consensus 123 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 194 (331)
+..+...|.. .+++++|...|++..... +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 7778888888 888999998888887653 67778888888888 888889998888888754 45566677
Q ss_pred HHHHhc----cCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHh----cCCHHHHHHHHhhcccCCccHHHHHHHHHH
Q 048799 195 LNACSH----GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR----AGRLEQAEKVASGIPSEITNVVVWRTLLGA 266 (331)
Q Consensus 195 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~ 266 (331)
...|.. .+++++|...|++..+. + +...+..+...|.. .+++++|...|+++.+.. +...+..+...
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~ 227 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 777776 88888888888888765 3 45677778888888 888888888888877662 36677777888
Q ss_pred Hhc----CCchhHHHHHHHHHHHhhcCC
Q 048799 267 CSF----HGNVEMGERVTRKILEMERGY 290 (331)
Q Consensus 267 ~~~----~g~~~~a~~~~~~~~~~~~~~ 290 (331)
|.. .+++++|.+.++++.+.+|++
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 887 888888888888888877654
No 46
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.79 E-value=9.7e-18 Score=141.62 Aligned_cols=269 Identities=11% Similarity=-0.024 Sum_probs=160.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhccCCCCc--hHHHHHHHHHHhhcCchhHHHHHHhhhhhc----CCCcchhHHHH
Q 048799 51 WTGIIDGYTRMNRSNGALALFRRMVACEYTEPS--EITILAVFPAIWQNGDVRNCQLIHGYGEKR----GFNAFHIHVSN 124 (331)
Q Consensus 51 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ 124 (331)
+..+...+...|++++|+..|++++......+. ...+..+..++...|++++|...++++++. +..+....++.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 444555666777777777777776443211111 135566666666777777777776666543 22222455666
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhhc------CC-cHHHHHHHHHHHHccCC-----------------hHHHHHHHHHHH
Q 048799 125 CLIDTYAKCGCIFSALKLFEDISVE------RK-NLVSWTSIISGFAMHGM-----------------GKEAVENFERMQ 180 (331)
Q Consensus 125 ~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~m~ 180 (331)
.+...|...|++++|...|+++... .+ ...++..+...|...|+ +++|++.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 6777777777777777777666543 11 23456666666777777 777777666654
Q ss_pred hc----cCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCc----HhhHHHHHHHHHhcCCHHHHHHHHhhcc
Q 048799 181 KV----VLKP-NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD----IKHYGCLIDMLGRAGRLEQAEKVASGIP 251 (331)
Q Consensus 181 ~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 251 (331)
.. +..+ ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...++++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 32 1111 1235566666677777777777777766553110111 2256666677777777777777777665
Q ss_pred cCCc-------cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCC------CccHHHHHHHHhhhccCcchHHHHHHHh
Q 048799 252 SEIT-------NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY------GGDYVLMYNILAGVWRYGDAERLRRVVD 318 (331)
Q Consensus 252 ~~~p-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (331)
...+ ...++..+...+...|++++|...++++.+..+.. ...+..++.++...|++++|...+++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5411 14556666677777777777777777777654332 2256667777777777777777776654
Q ss_pred h
Q 048799 319 E 319 (331)
Q Consensus 319 ~ 319 (331)
+
T Consensus 371 ~ 371 (411)
T 4a1s_A 371 Q 371 (411)
T ss_dssp H
T ss_pred H
Confidence 4
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.79 E-value=6.5e-16 Score=123.02 Aligned_cols=223 Identities=9% Similarity=-0.049 Sum_probs=124.6
Q ss_pred hHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHh----cCCHhHHHHHHHHhhhcCCcHHHHHHH
Q 048799 84 EITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK----CGCIFSALKLFEDISVERKNLVSWTSI 159 (331)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l 159 (331)
+.++..+...+...|++++|...|++..+.+ +..++..+...|.. .+++++|...|++..... +..++..+
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l 80 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHHHH
Confidence 4445555555556666666666666655521 33445555556665 666666666666554433 44555555
Q ss_pred HHHHHc----cCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhcCCCCcHhhHHHHH
Q 048799 160 ISGFAM----HGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH----GGLVEEGLKFFDKMVEECEVLPDIKHYGCLI 231 (331)
Q Consensus 160 ~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 231 (331)
...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+. + +...+..+.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg 153 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILG 153 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHH
Confidence 555555 666666666666655543 44455555555555 56666666666665553 2 344455555
Q ss_pred HHHHh----cCCHHHHHHHHhhcccCCccHHHHHHHHHHHhc----CCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhh
Q 048799 232 DMLGR----AGRLEQAEKVASGIPSEITNVVVWRTLLGACSF----HGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303 (331)
Q Consensus 232 ~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (331)
..|.. .+++++|...|+++.+. .+...+..+...|.. .+++++|...++++.+.+| +..+..++.+|..
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHc
Confidence 55555 56666666666655544 234455555555555 5666666666666655433 3455555666655
Q ss_pred ----hccCcchHHHHHHHhhcc
Q 048799 304 ----VWRYGDAERLRRVVDERN 321 (331)
Q Consensus 304 ----~g~~~~a~~~~~~~~~~~ 321 (331)
.+++++|.+.+++..+.+
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHT
T ss_pred CCCcccCHHHHHHHHHHHHHcC
Confidence 566666666665555443
No 48
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.78 E-value=2.3e-17 Score=135.02 Aligned_cols=268 Identities=12% Similarity=0.003 Sum_probs=163.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhccCCCCc--hHHHHHHHHHHhhcCchhHHHHHHhhhhhc----CCCcchhHHHHHH
Q 048799 53 GIIDGYTRMNRSNGALALFRRMVACEYTEPS--EITILAVFPAIWQNGDVRNCQLIHGYGEKR----GFNAFHIHVSNCL 126 (331)
Q Consensus 53 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l 126 (331)
.....+...|++++|...|+++.......|. ...+..+...+...|++++|...++++.+. +..+....++..+
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 3444555666666666666665332111111 234555556666666666666666654432 2222234556666
Q ss_pred HHHHHhcCCHhHHHHHHHHhhhcC---Cc----HHHHHHHHHHHHccCC--------------------hHHHHHHHHHH
Q 048799 127 IDTYAKCGCIFSALKLFEDISVER---KN----LVSWTSIISGFAMHGM--------------------GKEAVENFERM 179 (331)
Q Consensus 127 ~~~~~~~g~~~~A~~~~~~~~~~~---~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~m 179 (331)
...+...|++++|...++++.... ++ ..++..+...+...|+ +++|++.+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 677777777777777776664431 11 2356666666666777 77777776665
Q ss_pred Hhc----cCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCC----cHhhHHHHHHHHHhcCCHHHHHHHHhhc
Q 048799 180 QKV----VLKP-NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP----DIKHYGCLIDMLGRAGRLEQAEKVASGI 250 (331)
Q Consensus 180 ~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 250 (331)
... +..| ....+..+...+...|++++|...++++.+...-.+ ....+..+...+...|++++|...++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 432 1111 123566667777777788888777777664311111 1236667777777888888888887776
Q ss_pred ccC---Ccc----HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCC------CccHHHHHHHHhhhccCcchHHHHHHH
Q 048799 251 PSE---ITN----VVVWRTLLGACSFHGNVEMGERVTRKILEMERGY------GGDYVLMYNILAGVWRYGDAERLRRVV 317 (331)
Q Consensus 251 ~~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (331)
... .++ ..++..+...+...|++++|...++++.+..+.. ...+..++.++...|++++|...+++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 544 111 4566777778888888888888888887754432 236667888888888888888888877
Q ss_pred hhc
Q 048799 318 DER 320 (331)
Q Consensus 318 ~~~ 320 (331)
.+.
T Consensus 330 ~~~ 332 (338)
T 3ro2_A 330 LEI 332 (338)
T ss_dssp HHC
T ss_pred HHH
Confidence 654
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.78 E-value=7.1e-17 Score=124.48 Aligned_cols=203 Identities=12% Similarity=0.041 Sum_probs=178.6
Q ss_pred cchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHH
Q 048799 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195 (331)
Q Consensus 117 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 195 (331)
|.+..++..++..+...|++++|...|+++....| +...+..+...+...|++++|.+.++++.... +.+..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 33778888999999999999999999999987765 57889999999999999999999999998753 34677888999
Q ss_pred HHHhcc-CChHHHHHHHHHHHHhcCCCC-cHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCc
Q 048799 196 NACSHG-GLVEEGLKFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGN 272 (331)
Q Consensus 196 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 272 (331)
..+... |++++|...++++.+. +..| +...+..+...+...|++++|...++++....| +...+..+..++...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 999999 9999999999999873 3344 467888999999999999999999999887734 57889999999999999
Q ss_pred hhHHHHHHHHHHHhhc-CCCccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 273 VEMGERVTRKILEMER-GYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 273 ~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
+++|...++++.+..| +++..+..++..+...|+.++|..+++.+.+..
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 9999999999999999 888888888889999999999999999887643
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.78 E-value=2.6e-17 Score=136.54 Aligned_cols=231 Identities=10% Similarity=0.027 Sum_probs=199.4
Q ss_pred hHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCC-HhHHHHHHHHhhhcCC-cHHHHHHHHH
Q 048799 84 EITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC-IFSALKLFEDISVERK-NLVSWTSIIS 161 (331)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~-~~~~~~~l~~ 161 (331)
...|..+..++...|++++|+..++++++..+. +..+|+.+..++...|+ +++|+..|+++....| +..+|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~--~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc--CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 457778888899999999999999999998655 78899999999999997 9999999999998876 6789999999
Q ss_pred HHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHh-cCCH
Q 048799 162 GFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR-AGRL 240 (331)
Q Consensus 162 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 240 (331)
++...|++++|+..|++++... +-+...|..+..++...|++++|+..++++++. -+-+...|+.+..++.. .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999854 236788999999999999999999999999975 23378899999999999 6665
Q ss_pred HHH-----HHHHhhcccCCc-cHHHHHHHHHHHhcCC--chhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhc-------
Q 048799 241 EQA-----EKVASGIPSEIT-NVVVWRTLLGACSFHG--NVEMGERVTRKILEMERGYGGDYVLMYNILAGVW------- 305 (331)
Q Consensus 241 ~~A-----~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 305 (331)
++| ...++++....| +...|..+..++...| ++++|++.+.++ +.+|+++..+..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 588888877744 6788999999999888 689999999998 778888888999999999875
Q ss_pred --cCcchHHHHHHH-hhc
Q 048799 306 --RYGDAERLRRVV-DER 320 (331)
Q Consensus 306 --~~~~a~~~~~~~-~~~ 320 (331)
..++|.++++++ .+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 331 EDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 258899999988 553
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.78 E-value=6.8e-18 Score=134.49 Aligned_cols=242 Identities=8% Similarity=-0.181 Sum_probs=186.0
Q ss_pred HHcCCHHHHHHHHhhCCCC-------CchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCch
Q 048799 28 VKWGELEYARSLFEEMPCR-------NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDV 100 (331)
Q Consensus 28 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 100 (331)
...|++++|+..|+++.+. +..+|..+...+...|++++|...|++++... +.+..++..+..++...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCH
Confidence 3457889999999887642 35678888999999999999999999985432 34678889999999999999
Q ss_pred hHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 048799 101 RNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180 (331)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 180 (331)
++|...++++++..+. +..++..++.++...|++++|...|+++....|+.......+..+...|++++|+..+++..
T Consensus 94 ~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPT--YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHCTT--CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcc--ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999988544 67888899999999999999999999998877765555555555667799999999998877
Q ss_pred hccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCC-----cHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc
Q 048799 181 KVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP-----DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT 255 (331)
Q Consensus 181 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 255 (331)
... +++...+ .++..+...++.++|...+..+.+. .| +...+..+...|...|++++|...|+++....|
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 653 3343334 3666777888888999988887643 22 257788899999999999999999999988745
Q ss_pred cHHHHHHHHHHHhcCCchhHHHHHH
Q 048799 256 NVVVWRTLLGACSFHGNVEMGERVT 280 (331)
Q Consensus 256 ~~~~~~~l~~~~~~~g~~~~a~~~~ 280 (331)
+. +.....++...|++++|++.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 32 233355667778888888776
No 52
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=5.4e-16 Score=135.35 Aligned_cols=213 Identities=8% Similarity=-0.051 Sum_probs=172.0
Q ss_pred HHHHHHhhhhhcCCCcchhHHHHHHHHHHHh-------cCCHh-------HHHHHHHHhhh-cCC-cHHHHHHHHHHHHc
Q 048799 102 NCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK-------CGCIF-------SALKLFEDISV-ERK-NLVSWTSIISGFAM 165 (331)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~-~~~-~~~~~~~l~~~~~~ 165 (331)
.+..+|++++... |.++.+|..++..+.+ .|+++ +|..+|+++.. ..| +...|..++..+.+
T Consensus 256 ~a~~~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 256 RVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5566777777763 3377888888888876 69987 99999999986 455 57889999999999
Q ss_pred cCChHHHHHHHHHHHhccCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCC-cHhhHHHHHHH-HHhcCCHH
Q 048799 166 HGMGKEAVENFERMQKVVLKPN--RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP-DIKHYGCLIDM-LGRAGRLE 241 (331)
Q Consensus 166 ~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~g~~~ 241 (331)
.|++++|..+|+++.+ ..|+ ...|..++..+.+.|+.++|..+|++..+. +| +...+...+.. +...|+++
T Consensus 334 ~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp TTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHH
T ss_pred cCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChh
Confidence 9999999999999988 4454 257888888888999999999999999864 33 33334333322 34689999
Q ss_pred HHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCc----cHHHHHHHHhhhccCcchHHHHHH
Q 048799 242 QAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG----DYVLMYNILAGVWRYGDAERLRRV 316 (331)
Q Consensus 242 ~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~ 316 (331)
+|..+|+.+....| ++..|..++..+.+.|+.++|..+|+++.+..|.++. .|...+......|+.+.+..+.++
T Consensus 409 ~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 409 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999887744 6899999999999999999999999999997665544 677778888889999999999988
Q ss_pred Hhhcc
Q 048799 317 VDERN 321 (331)
Q Consensus 317 ~~~~~ 321 (331)
+.+.-
T Consensus 489 ~~~~~ 493 (530)
T 2ooe_A 489 RFTAF 493 (530)
T ss_dssp HHHHT
T ss_pred HHHHC
Confidence 86643
No 53
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=2.4e-16 Score=135.51 Aligned_cols=300 Identities=9% Similarity=-0.101 Sum_probs=220.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhhCC-----------CC-CchhHHHHHHHHHhcCChhHHHHHHHHHHhcc-----
Q 048799 16 NLVTWNVMITGLVKWGELEYARSLFEEMP-----------CR-NVVSWTGIIDGYTRMNRSNGALALFRRMVACE----- 78 (331)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 78 (331)
....|+.|..++...|++++|++.|++.. .| ...+|+.+..+|...|++++|...+++.....
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 45689999999999999999999998753 12 34689999999999999999999998874321
Q ss_pred CCC-CchHHHHHHHHHHhh--cCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHH---HhcCCHhHHHHHHHHhhhcCC-
Q 048799 79 YTE-PSEITILAVFPAIWQ--NGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTY---AKCGCIFSALKLFEDISVERK- 151 (331)
Q Consensus 79 ~~~-~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~- 151 (331)
... ....++..+..++.. .+++++|+..|+++++..+. ++..+..+..++ ...++.++|++.++++....|
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~--~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK--NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 111 224566666555544 45799999999999998654 666666666554 456788899999999887766
Q ss_pred cHHHHHHHHHHHH----ccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhH
Q 048799 152 NLVSWTSIISGFA----MHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHY 227 (331)
Q Consensus 152 ~~~~~~~l~~~~~----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 227 (331)
+..++..+...+. ..+++++|.+.+++..... +.+...+..+...|...|++++|...++++.+. .+.+..++
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 284 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLH 284 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHH
Confidence 4666666655544 3467889999999987753 346677888999999999999999999999875 23356677
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh
Q 048799 228 GCLIDMLGRA-------------------GRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEME 287 (331)
Q Consensus 228 ~~l~~~~~~~-------------------g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 287 (331)
..+...|... +..+.|...++.+... +.+...+..+...+...|++++|+..|+++++..
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 7776665432 3356777778777665 3345778889999999999999999999999877
Q ss_pred cCCCc---cHHHHHH-HHhhhccCcchHHHHHHHhhc
Q 048799 288 RGYGG---DYVLMYN-ILAGVWRYGDAERLRRVVDER 320 (331)
Q Consensus 288 ~~~~~---~~~~l~~-~~~~~g~~~~a~~~~~~~~~~ 320 (331)
|++.. .+..++. .+...|++++|+..+++..+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 65422 2334443 345678899999988877653
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.77 E-value=6.9e-17 Score=127.02 Aligned_cols=200 Identities=9% Similarity=-0.101 Sum_probs=178.3
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 048799 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198 (331)
Q Consensus 120 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 198 (331)
...+..++..+...|++++|...|+++....| +..++..+...+...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 67888999999999999999999999987755 67889999999999999999999999998754 34677888899999
Q ss_pred hccCChHHHHHHHHHHHHhcCCCC-cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHH
Q 048799 199 SHGGLVEEGLKFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMG 276 (331)
Q Consensus 199 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a 276 (331)
...|++++|.++++++.+. +..| +...+..++..+...|++++|.+.++++... +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999873 3445 5678888999999999999999999998876 34578899999999999999999
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 277 ERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
...++++.+..|++...+..++.++...|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999888889999999999999999999999998754
No 55
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=2.1e-19 Score=159.72 Aligned_cols=150 Identities=9% Similarity=0.058 Sum_probs=121.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhhCC-------CCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHH
Q 048799 16 NLVTWNVMITGLVKWGELEYARSLFEEMP-------CRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88 (331)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 88 (331)
-..+|++||++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++| ...|+.||..||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM-~~~G~~PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV-KDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCcHHHHH
Confidence 34689999999999999999999997753 689999999999999999999999999999 8889999999999
Q ss_pred HHHHHHhhcCch-hHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc---CCcHHHHHHHHHHHH
Q 048799 89 AVFPAIWQNGDV-RNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE---RKNLVSWTSIISGFA 164 (331)
Q Consensus 89 ~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~ 164 (331)
+++.++++.|+. ++|.++|++|.+.|+.| |..+|+.++....+.+-++...++...+.-. .|...+...|.+.|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~P-D~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKL-QALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCS-HHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCC-ChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 999999999985 78999999999999999 9999999887666554333333222222111 112445556667777
Q ss_pred ccC
Q 048799 165 MHG 167 (331)
Q Consensus 165 ~~~ 167 (331)
+.+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 655
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.77 E-value=3.1e-17 Score=128.18 Aligned_cols=200 Identities=9% Similarity=-0.002 Sum_probs=161.8
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 197 (331)
....+..++..+...|++++|...|+++....| +...+..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 556777888999999999999999999988765 67889999999999999999999999998753 3467888889999
Q ss_pred HhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHH
Q 048799 198 CSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMG 276 (331)
Q Consensus 198 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a 276 (331)
+...|++++|...++++.+. .+.+...+..++..+...|++++|...++++... +.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999875 2447788899999999999999999999998877 44678899999999999999999
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 277 ERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
...++++.+..|+++..+..++.++...|++++|...++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999988899999999999999999999999987754
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.76 E-value=9e-17 Score=135.67 Aligned_cols=272 Identities=10% Similarity=0.039 Sum_probs=213.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhCC--CCC-c----hhHHHHHHHHHhcCChhHHHHHHHHHHhcc---C-CCCchH
Q 048799 17 LVTWNVMITGLVKWGELEYARSLFEEMP--CRN-V----VSWTGIIDGYTRMNRSNGALALFRRMVACE---Y-TEPSEI 85 (331)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~~ 85 (331)
...+..+...+...|++++|+..|+++. .|+ . ..|..+...+...|++++|...+++.+... + .+....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 3445567788999999999999999876 233 2 478889999999999999999999884421 1 122345
Q ss_pred HHHHHHHHHhhcCchhHHHHHHhhhhhc----CCCcchhHHHHHHHHHHHhcCC-----------------HhHHHHHHH
Q 048799 86 TILAVFPAIWQNGDVRNCQLIHGYGEKR----GFNAFHIHVSNCLIDTYAKCGC-----------------IFSALKLFE 144 (331)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~ 144 (331)
++..+...+...|++++|...++++.+. +..+....++..+...|...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7888889999999999999999988765 2223256688899999999999 999999998
Q ss_pred Hhhhc-----C-C-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccC-CCC----HHHHHHHHHHHhccCChHHHHHHHH
Q 048799 145 DISVE-----R-K-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVL-KPN----RVTFLSVLNACSHGGLVEEGLKFFD 212 (331)
Q Consensus 145 ~~~~~-----~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~ 212 (331)
+.... . + ...++..+...+...|++++|+..+++...... .++ ...+..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 87553 1 1 245788888999999999999999998876321 112 2367888999999999999999999
Q ss_pred HHHHhcCCCC----cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC---Cc----cHHHHHHHHHHHhcCCchhHHHHHHH
Q 048799 213 KMVEECEVLP----DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE---IT----NVVVWRTLLGACSFHGNVEMGERVTR 281 (331)
Q Consensus 213 ~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p----~~~~~~~l~~~~~~~g~~~~a~~~~~ 281 (331)
++.+...-.. ...++..+...|...|++++|...++++... .+ ...++..+..+|...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9876411111 2567888899999999999999999988765 11 24578888999999999999999999
Q ss_pred HHHHhhc
Q 048799 282 KILEMER 288 (331)
Q Consensus 282 ~~~~~~~ 288 (331)
++.++.+
T Consensus 368 ~al~~~~ 374 (411)
T 4a1s_A 368 QHLQLAX 374 (411)
T ss_dssp HHHHHCC
T ss_pred HHHHHHh
Confidence 9998644
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.76 E-value=1.4e-17 Score=142.88 Aligned_cols=213 Identities=8% Similarity=-0.091 Sum_probs=181.3
Q ss_pred chhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCH-hHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHH
Q 048799 99 DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI-FSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENF 176 (331)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 176 (331)
.++++.+.++....... .+...+..+..++...|++ ++|+..|+++....| +..+|..+..+|...|++++|++.|
T Consensus 83 ~~~~al~~l~~~~~~~~--~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ--VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35666677776665543 3778888899999999999 999999999987766 4788999999999999999999999
Q ss_pred HHHHhccCCCCHHHHHHHHHHHhcc---------CChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhc--------CC
Q 048799 177 ERMQKVVLKPNRVTFLSVLNACSHG---------GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA--------GR 239 (331)
Q Consensus 177 ~~m~~~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~ 239 (331)
++..+. .|+...+..+...+... |++++|...++++.+. .+.+...+..+..+|... |+
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccch
Confidence 998874 47778888889999998 9999999999999875 234678888999999888 99
Q ss_pred HHHHHHHHhhcccCCc----cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHH
Q 048799 240 LEQAEKVASGIPSEIT----NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRR 315 (331)
Q Consensus 240 ~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 315 (331)
+++|.+.|+++....| +...|..+..+|...|++++|.+.|+++.+.+|+++..+..+..++...|++++|...+.
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999888644 788999999999999999999999999999999998889999999999999998887554
Q ss_pred HH
Q 048799 316 VV 317 (331)
Q Consensus 316 ~~ 317 (331)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.75 E-value=1.2e-16 Score=130.75 Aligned_cols=273 Identities=15% Similarity=0.068 Sum_probs=209.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhCC--CCC-----chhHHHHHHHHHhcCChhHHHHHHHHHHhcc---CCCC-chH
Q 048799 17 LVTWNVMITGLVKWGELEYARSLFEEMP--CRN-----VVSWTGIIDGYTRMNRSNGALALFRRMVACE---YTEP-SEI 85 (331)
Q Consensus 17 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~ 85 (331)
...+......+...|++++|...|+++. .|+ ...+..+...+...|++++|...+++..... +..| ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3445566788899999999999999876 233 3578889999999999999999999874321 1112 245
Q ss_pred HHHHHHHHHhhcCchhHHHHHHhhhhhcCC----CcchhHHHHHHHHHHHhcCC--------------------HhHHHH
Q 048799 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGF----NAFHIHVSNCLIDTYAKCGC--------------------IFSALK 141 (331)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~ 141 (331)
++..+...+...|++++|...++++.+... .+....++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 778888999999999999999998876422 11124478889999999999 999999
Q ss_pred HHHHhhhc------CC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccC-CCC----HHHHHHHHHHHhccCChHHHHH
Q 048799 142 LFEDISVE------RK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVL-KPN----RVTFLSVLNACSHGGLVEEGLK 209 (331)
Q Consensus 142 ~~~~~~~~------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~ 209 (331)
.+++.... .+ ...++..+...+...|++++|+..+++...... .++ ..++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99887543 11 245688888999999999999999998865321 111 2377888889999999999999
Q ss_pred HHHHHHHhcCCCCc----HhhHHHHHHHHHhcCCHHHHHHHHhhcccC---Cc----cHHHHHHHHHHHhcCCchhHHHH
Q 048799 210 FFDKMVEECEVLPD----IKHYGCLIDMLGRAGRLEQAEKVASGIPSE---IT----NVVVWRTLLGACSFHGNVEMGER 278 (331)
Q Consensus 210 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p----~~~~~~~l~~~~~~~g~~~~a~~ 278 (331)
.+++..+...-.++ ..++..+...+...|++++|...++++... .. ...++..+...+...|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99998764111111 557788889999999999999999988665 11 14577888999999999999999
Q ss_pred HHHHHHHhhcC
Q 048799 279 VTRKILEMERG 289 (331)
Q Consensus 279 ~~~~~~~~~~~ 289 (331)
.++++.+..+.
T Consensus 325 ~~~~a~~~~~~ 335 (338)
T 3ro2_A 325 FAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHHHHh
Confidence 99999986543
No 60
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.75 E-value=4.9e-17 Score=136.08 Aligned_cols=292 Identities=7% Similarity=-0.023 Sum_probs=210.9
Q ss_pred HHHHcCCHHHHHHHHhhCCC--------CCchhHHHHHHH--HHhcCChhHHH-----------HHHHHHHhccCCCCch
Q 048799 26 GLVKWGELEYARSLFEEMPC--------RNVVSWTGIIDG--YTRMNRSNGAL-----------ALFRRMVACEYTEPSE 84 (331)
Q Consensus 26 ~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~ 84 (331)
.+.+.+++++|..+++++.+ ++...|..++.. ....++++.+. +.++.+ .... ++.
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i-~~~~--~~~ 97 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEI-DKKQ--ARL 97 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHH-HHHT--HHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHH-HhcC--CCc
Confidence 35789999999999988741 233334444332 22233444444 666666 3221 111
Q ss_pred HH------HHHHHHHHhhcCchhHHHHHHhhhhhc----CCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc---CC
Q 048799 85 IT------ILAVFPAIWQNGDVRNCQLIHGYGEKR----GFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE---RK 151 (331)
Q Consensus 85 ~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~ 151 (331)
.. +......+...|++++|...++++.+. +..+....++..++.+|...|++++|...++++... .+
T Consensus 98 ~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 177 (383)
T 3ulq_A 98 TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE 177 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS
T ss_pred hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence 22 223566778999999999999998875 222224578889999999999999999999988764 11
Q ss_pred -----cHHHHHHHHHHHHccCChHHHHHHHHHHHhccC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHhc---
Q 048799 152 -----NLVSWTSIISGFAMHGMGKEAVENFERMQKVVL-KPN----RVTFLSVLNACSHGGLVEEGLKFFDKMVEEC--- 218 (331)
Q Consensus 152 -----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 218 (331)
...+++.+...|...|++++|+..|++..+... .++ ..++..+...|...|++++|...+++..+..
T Consensus 178 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 178 AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 245788889999999999999999998875321 111 2478889999999999999999999988721
Q ss_pred CC-CCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-----Ccc-HHHHHHHHHHHhcCCc---hhHHHHHHHHHHHhhc
Q 048799 219 EV-LPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-----ITN-VVVWRTLLGACSFHGN---VEMGERVTRKILEMER 288 (331)
Q Consensus 219 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~ 288 (331)
+. +....++..+...|.+.|++++|...++++... .|. ...+..+...+...|+ +++|..++++.. ..|
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-~~~ 336 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-LYA 336 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-CHH
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-CHH
Confidence 12 334677889999999999999999999988765 122 2335667788889998 677777776652 234
Q ss_pred CCCccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 289 GYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 289 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
.....+..++..|...|++++|...+++..+..
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 444677889999999999999999999887643
No 61
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=3.6e-15 Score=137.03 Aligned_cols=240 Identities=13% Similarity=0.066 Sum_probs=169.7
Q ss_pred HcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHh
Q 048799 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHG 108 (331)
Q Consensus 29 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 108 (331)
..|++++|.++.++.. +..+|..+..++...|++++|++.|.+. .|...|..++.++.+.|++++|.+.+.
T Consensus 1088 ~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~ 1158 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQ 1158 (1630)
T ss_pred HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566666666666553 3456777777777777777777777554 455667777777777777777777777
Q ss_pred hhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCH
Q 048799 109 YGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR 188 (331)
Q Consensus 109 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 188 (331)
...+... ++.+.+.++.+|++.+++++...+. ..++...|..+...|...|++++|..+|...
T Consensus 1159 mArk~~~---e~~Idt~LafaYAKl~rleele~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------- 1221 (1630)
T 1xi4_A 1159 MARKKAR---ESYVETELIFALAKTNRLAELEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------- 1221 (1630)
T ss_pred HHHhhcc---cccccHHHHHHHHhhcCHHHHHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------
Confidence 7666542 2223334777777777777533332 2445556666777777788888888887764
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHh
Q 048799 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACS 268 (331)
Q Consensus 189 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~ 268 (331)
..|..+..++++.|+++.|.+.+++.. +..+|..+..+|...|++..|......+.. ++..+..++..|.
T Consensus 1222 ~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~Iiv---~~deLeeli~yYe 1291 (1630)
T 1xi4_A 1222 SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHIVV---HADELEELINYYQ 1291 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhhhc---CHHHHHHHHHHHH
Confidence 257777777888888888877777652 456777777777778888888777665332 5666778888899
Q ss_pred cCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhh
Q 048799 269 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304 (331)
Q Consensus 269 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 304 (331)
+.|.+++|+.+++..+.++|.+...|..++.+|.+.
T Consensus 1292 ~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1292 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 999999999999999988888878887788777764
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.73 E-value=3.8e-16 Score=130.65 Aligned_cols=235 Identities=7% Similarity=-0.075 Sum_probs=184.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhccCCCCc----hHHHHHHHHHHhhcCchhHHHHHHhhhhhcCC-----CcchhHHHH
Q 048799 54 IIDGYTRMNRSNGALALFRRMVACEYTEPS----EITILAVFPAIWQNGDVRNCQLIHGYGEKRGF-----NAFHIHVSN 124 (331)
Q Consensus 54 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ 124 (331)
....+...|++++|+..|++........++ ..++..+..++...|++++|...+.++.+... .+....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566788999999999999998543221232 45788899999999999999999999876421 222356788
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhhcC---C----cHHHHHHHHHHHHccCChHHHHHHHHHHHhc----cC-CCCHHHHH
Q 048799 125 CLIDTYAKCGCIFSALKLFEDISVER---K----NLVSWTSIISGFAMHGMGKEAVENFERMQKV----VL-KPNRVTFL 192 (331)
Q Consensus 125 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~~~ 192 (331)
.++.+|...|++++|...|+++.... + ...++..+...|...|++++|++.|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 89999999999999999999887552 1 1247888999999999999999999998762 23 33467788
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhc---CCCCcHhhHHHHHHHHHhcCC---HHHHHHHHhhcccCCccHHHHHHHHHH
Q 048799 193 SVLNACSHGGLVEEGLKFFDKMVEEC---EVLPDIKHYGCLIDMLGRAGR---LEQAEKVASGIPSEITNVVVWRTLLGA 266 (331)
Q Consensus 193 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~l~~~ 266 (331)
.+...+...|++++|...+++..+.. +.+.....+..+...+...|+ +++|..++++..........+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999987641 111123345677888888999 899999999885443345678889999
Q ss_pred HhcCCchhHHHHHHHHHHHhhc
Q 048799 267 CSFHGNVEMGERVTRKILEMER 288 (331)
Q Consensus 267 ~~~~g~~~~a~~~~~~~~~~~~ 288 (331)
|...|++++|...++++.+...
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998543
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=1.4e-14 Score=117.36 Aligned_cols=222 Identities=8% Similarity=-0.029 Sum_probs=169.4
Q ss_pred hHHHHHHHHHHhccCCCCchHHHHHHHHHHh-------hcCch-------hHHHHHHhhhhh-cCCCcchhHHHHHHHHH
Q 048799 65 NGALALFRRMVACEYTEPSEITILAVFPAIW-------QNGDV-------RNCQLIHGYGEK-RGFNAFHIHVSNCLIDT 129 (331)
Q Consensus 65 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~ 129 (331)
++|..+|++++... +.++..|..++..+. ..|++ ++|..+|+++++ ..+. +..+|..++..
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~--~~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK--NMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc--cHHHHHHHHHH
Confidence 57778888875433 345566766666654 34775 889999998888 4433 67788888889
Q ss_pred HHhcCCHhHHHHHHHHhhhcCCc-HH-HHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHH-hccCChHH
Q 048799 130 YAKCGCIFSALKLFEDISVERKN-LV-SWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC-SHGGLVEE 206 (331)
Q Consensus 130 ~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~~~~ 206 (331)
+.+.|++++|..+|+++....|+ .. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++
T Consensus 109 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 109 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999998877664 43 78888888888899999999999888753 23344444333332 23689999
Q ss_pred HHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC---Cc--cHHHHHHHHHHHhcCCchhHHHHHHH
Q 048799 207 GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE---IT--NVVVWRTLLGACSFHGNVEMGERVTR 281 (331)
Q Consensus 207 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p--~~~~~~~l~~~~~~~g~~~~a~~~~~ 281 (331)
|..+|+++.+. .+.+...|..++..+.+.|++++|..+|+++... .| ....|..++..+.+.|+.+.|..+++
T Consensus 188 A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 188 AFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999998875 2346788888889899999999999999998874 33 36788888888888999999999999
Q ss_pred HHHHhhcCCCcc
Q 048799 282 KILEMERGYGGD 293 (331)
Q Consensus 282 ~~~~~~~~~~~~ 293 (331)
++.+..|++...
T Consensus 266 ~a~~~~p~~~~~ 277 (308)
T 2ond_A 266 RRFTAFREEYEG 277 (308)
T ss_dssp HHHHHTTTTTSS
T ss_pred HHHHHccccccc
Confidence 999988876544
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.72 E-value=1.3e-15 Score=113.82 Aligned_cols=169 Identities=11% Similarity=0.047 Sum_probs=119.1
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 197 (331)
+..+|..++..|...|++++|+..|+++.+..| +..+|..+..+|.+.|++++|+..+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 556677777777777777777777777776655 46677777777777777777777777766543 2344556666666
Q ss_pred HhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHH
Q 048799 198 CSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMG 276 (331)
Q Consensus 198 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a 276 (331)
+...++++.|...+.+..+. .+.+...+..+...|.+.|++++|.+.|+++... +.+..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 77777777777777777654 2335666777777777777777777777777665 33567777777777777777777
Q ss_pred HHHHHHHHHhhcCC
Q 048799 277 ERVTRKILEMERGY 290 (331)
Q Consensus 277 ~~~~~~~~~~~~~~ 290 (331)
++.|+++++.+|++
T Consensus 161 ~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 161 VKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHTTHHH
T ss_pred HHHHHHHHhCCccC
Confidence 77777777777654
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=8.8e-17 Score=130.29 Aligned_cols=168 Identities=11% Similarity=0.027 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcc------CCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhc------CCC
Q 048799 49 VSWTGIIDGYTRMNRSNGALALFRRMVACE------YTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR------GFN 116 (331)
Q Consensus 49 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~ 116 (331)
.++..+...+...|++++|...|+++.... ..+....++..+..++...|++++|...++++++. +..
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 456667777777777777777777763310 11223445666666667777777777777766654 222
Q ss_pred cchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC--------C-cHHHHHHHHHHHHccCChHHHHHHHHHHHhc-----
Q 048799 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER--------K-NLVSWTSIISGFAMHGMGKEAVENFERMQKV----- 182 (331)
Q Consensus 117 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----- 182 (331)
+....++..+...+...|++++|...|+++.... | ...++..+...+...|++++|++.|+++...
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 3245566666667777777777777666665431 2 2345556666666666677776666666543
Q ss_pred -cCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 048799 183 -VLKP-NRVTFLSVLNACSHGGLVEEGLKFFDKMVE 216 (331)
Q Consensus 183 -~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 216 (331)
+..| ...++..+...+...|++++|...++++.+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 223455566666666666666666666654
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=1.5e-16 Score=128.95 Aligned_cols=252 Identities=11% Similarity=0.007 Sum_probs=164.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhhCCC--------C---CchhHHHHHHHHHhcCChhHHHHHHHHHHhcc-----C
Q 048799 16 NLVTWNVMITGLVKWGELEYARSLFEEMPC--------R---NVVSWTGIIDGYTRMNRSNGALALFRRMVACE-----Y 79 (331)
Q Consensus 16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~ 79 (331)
+..++..+...+...|++++|..+|+++.+ . ...++..+...+...|++++|...+++++... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 567888899999999999999999988753 1 23467888889999999999999999985431 1
Q ss_pred -CCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhc------CCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc---
Q 048799 80 -TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR------GFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE--- 149 (331)
Q Consensus 80 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 149 (331)
.+....++..+...+...|++++|...++++.+. +..+....++..+...+...|++++|...|+++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2233567888888999999999999999998875 333435677888999999999999999999988764
Q ss_pred -----CC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCc
Q 048799 150 -----RK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD 223 (331)
Q Consensus 150 -----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 223 (331)
.| ...++..+...|...|++++|+..++++.+.. |... +..+- ...... . ..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~-~~~~~---~~~~~~---~-------------~~ 243 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HERE-FGSVD---DENKPI---W-------------MH 243 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHHH-HC---------CCH---H-------------HH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHhc-CCCCC---cchHHH---H-------------HH
Confidence 33 34578888899999999999999999887632 1100 00000 000000 0 01
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcC
Q 048799 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 289 (331)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 289 (331)
...+..+...+...+.+.+|...+.......| ...++..+..+|...|++++|.+.++++.++.|.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11112222233344455555555555554422 3466777777777777777777777777776553
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=1.1e-14 Score=118.08 Aligned_cols=216 Identities=8% Similarity=-0.049 Sum_probs=178.2
Q ss_pred hHHHHHHhhhhhcCCCcchhHHHHHHHHHHHh-------cCCH-------hHHHHHHHHhhh-cCC-cHHHHHHHHHHHH
Q 048799 101 RNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK-------CGCI-------FSALKLFEDISV-ERK-NLVSWTSIISGFA 164 (331)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~-~~~-~~~~~~~l~~~~~ 164 (331)
++|..+|+++++..+. ++.+|..++..+.. .|++ ++|..+|+++.. ..| +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~--~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 6788899999987443 78888888888764 5886 999999999998 466 5678999999999
Q ss_pred ccCChHHHHHHHHHHHhccCCCC-HH-HHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHH-hcCCHH
Q 048799 165 MHGMGKEAVENFERMQKVVLKPN-RV-TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLG-RAGRLE 241 (331)
Q Consensus 165 ~~~~~~~a~~~~~~m~~~~~~p~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~ 241 (331)
+.|++++|.++|+++.+ ..|+ .. .|..++..+.+.|++++|..+|+++.+. .+++...|...+.... ..|+++
T Consensus 111 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHH
T ss_pred hcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999988 4454 33 7888999999999999999999999864 2334555554443322 379999
Q ss_pred HHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHh---hcC-CCccHHHHHHHHhhhccCcchHHHHHH
Q 048799 242 QAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEM---ERG-YGGDYVLMYNILAGVWRYGDAERLRRV 316 (331)
Q Consensus 242 ~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 316 (331)
+|.++|+++... +.+...|..++..+.+.|++++|..+|+++++. .|+ ....|..++..+.+.|+.++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999877 446889999999999999999999999999985 443 556788889999999999999999999
Q ss_pred Hhhccc
Q 048799 317 VDERNA 322 (331)
Q Consensus 317 ~~~~~~ 322 (331)
+.+...
T Consensus 267 a~~~~p 272 (308)
T 2ond_A 267 RFTAFR 272 (308)
T ss_dssp HHHHTT
T ss_pred HHHHcc
Confidence 887554
No 68
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.70 E-value=2.2e-14 Score=131.97 Aligned_cols=277 Identities=9% Similarity=0.055 Sum_probs=217.0
Q ss_pred ccchhHHhhhcCCchHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCC
Q 048799 2 LKDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTE 81 (331)
Q Consensus 2 ~~~A~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 81 (331)
+++|.++.+++. +..+|..+..++...|++++|++.|.+. .|...|..++.++.+.|++++|.+.|..... ..
T Consensus 1092 ldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk-~~-- 1164 (1630)
T 1xi4_A 1092 LDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK-KA-- 1164 (1630)
T ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hc--
Confidence 455666666554 4567889999999999999999999775 6778889999999999999999999998733 32
Q ss_pred CchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHH
Q 048799 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIIS 161 (331)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 161 (331)
+++.....++.+|++.+++++...+. + .+ +...+..++..|...|++++|..+|..+ ..|..+..
T Consensus 1165 ~e~~Idt~LafaYAKl~rleele~fI----~---~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~ 1229 (1630)
T 1xi4_A 1165 RESYVETELIFALAKTNRLAELEEFI----N---GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLAS 1229 (1630)
T ss_pred ccccccHHHHHHHHhhcCHHHHHHHH----h---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHH
Confidence 33333335888999999988644443 1 22 4456667999999999999999999986 48999999
Q ss_pred HHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHH
Q 048799 162 GFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241 (331)
Q Consensus 162 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 241 (331)
.|.+.|++++|++.+++. .+..+|..+..+|...|++..|....... ..+...+..++..|.+.|.++
T Consensus 1230 tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~fe 1297 (1630)
T 1xi4_A 1230 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFE 1297 (1630)
T ss_pred HHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999876 35688998999999999999998766543 235667778999999999999
Q ss_pred HHHHHHhhcccC-CccHHHHHHHHHHHhcC--CchhHHHHHHHHHHHhhc-----CCCccHHHHHHHHhhhccCcchHH
Q 048799 242 QAEKVASGIPSE-ITNVVVWRTLLGACSFH--GNVEMGERVTRKILEMER-----GYGGDYVLMYNILAGVWRYGDAER 312 (331)
Q Consensus 242 ~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~ 312 (331)
+|..+++..... +-+...|.-+...+++. ++..++.++|..-....| .....|..+...|.+.|+++.|..
T Consensus 1298 EAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1298 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 999999988776 33456676677666653 455556666655444333 455778999999999999999874
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.70 E-value=2.1e-15 Score=112.64 Aligned_cols=168 Identities=13% Similarity=0.043 Sum_probs=149.9
Q ss_pred CcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHH
Q 048799 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCL 230 (331)
Q Consensus 151 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 230 (331)
.++..|..+...|...|++++|++.|++..+.. +-+...+..+..++...|++++|...+..+... .+.+...+..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 457789999999999999999999999998854 236778889999999999999999999999875 33467778888
Q ss_pred HHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcc
Q 048799 231 IDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGD 309 (331)
Q Consensus 231 ~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 309 (331)
...+...++++.|...+.++... +.+...+..+..++...|++++|++.|+++.+.+|.++..+..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88999999999999999998877 44678899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcc
Q 048799 310 AERLRRVVDERN 321 (331)
Q Consensus 310 a~~~~~~~~~~~ 321 (331)
|.+.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999987754
No 70
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=9.5e-15 Score=124.60 Aligned_cols=190 Identities=13% Similarity=-0.030 Sum_probs=143.8
Q ss_pred hhHHHHHHHHHHHhcC---CHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHcc----CChHHHHHHHHHHHhccCCCCHHH
Q 048799 119 HIHVSNCLIDTYAKCG---CIFSALKLFEDISVERK-NLVSWTSIISGFAMH----GMGKEAVENFERMQKVVLKPNRVT 190 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~~ 190 (331)
++..+..|...|...| +.++|+..|++.....+ +...+..+...|... +++++|+..|++.. .| +...
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a 250 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPAS 250 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHH
Confidence 3347778888888888 89999999998877644 555556777777655 68999999999887 33 3444
Q ss_pred HHHHHHH-H--hccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcC-----CHHHHHHHHhhcccCCccHHHHHH
Q 048799 191 FLSVLNA-C--SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG-----RLEQAEKVASGIPSEITNVVVWRT 262 (331)
Q Consensus 191 ~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~p~~~~~~~ 262 (331)
+..|... + ...+++++|..+|++..+. | +...+..|...|. .| ++++|.++|+++. ..++..+..
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--~g~~~A~~~ 323 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--GREVAADYY 323 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--TTCHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--CCCHHHHHH
Confidence 5555555 3 4588999999999998876 4 6667777777776 55 9999999999988 357777888
Q ss_pred HHHHHhc----CCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhh----hccCcchHHHHHHHhhcc
Q 048799 263 LLGACSF----HGNVEMGERVTRKILEMERGYGGDYVLMYNILAG----VWRYGDAERLRRVVDERN 321 (331)
Q Consensus 263 l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 321 (331)
|...|.. ..++++|...|+++.+ ++++.....++.+|.. ..+..+|...++...+.|
T Consensus 324 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 324 LGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 8877765 3488999999998875 5667888888888864 346777888887776655
No 71
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.69 E-value=3.5e-15 Score=124.54 Aligned_cols=305 Identities=9% Similarity=-0.045 Sum_probs=212.1
Q ss_pred CchHHHHHHHHHHH--HHcCCHHHHHHHHhhCCC--------CCchhHHHHHHH--HHhcCChhHHH---------HHHH
Q 048799 14 ERNLVTWNVMITGL--VKWGELEYARSLFEEMPC--------RNVVSWTGIIDG--YTRMNRSNGAL---------ALFR 72 (331)
Q Consensus 14 ~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~--~~~~~~~~~a~---------~~~~ 72 (331)
-|+..+-+.|-.-| .+.+++++|..+++++.+ .+...|..|+.. ..-.+....+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 35555656666555 889999999999987641 233344444432 11223333333 6666
Q ss_pred HHHhccCCCCch----HHHHHHHHHHhhcCchhHHHHHHhhhhhcC----CCcchhHHHHHHHHHHHhcCCHhHHHHHHH
Q 048799 73 RMVACEYTEPSE----ITILAVFPAIWQNGDVRNCQLIHGYGEKRG----FNAFHIHVSNCLIDTYAKCGCIFSALKLFE 144 (331)
Q Consensus 73 ~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 144 (331)
.+ .....+.+. ..+......+...|++++|...++++.+.. ..+....++..++.+|...|+++.|...++
T Consensus 87 ~i-~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 87 TI-ETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HH-HGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HH-hccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 65 322111111 123345556778999999999999987652 222245688889999999999999999999
Q ss_pred Hhhhc---CC-----cHHHHHHHHHHHHccCChHHHHHHHHHHHhcc--CC---CCHHHHHHHHHHHhccCChHHHHHHH
Q 048799 145 DISVE---RK-----NLVSWTSIISGFAMHGMGKEAVENFERMQKVV--LK---PNRVTFLSVLNACSHGGLVEEGLKFF 211 (331)
Q Consensus 145 ~~~~~---~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~---p~~~~~~~l~~~~~~~~~~~~a~~~~ 211 (331)
++... .+ ...+++.+...|...|++++|++.|++..+.. .. ....++..+..+|...|++++|...+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88654 11 24578889999999999999999999887631 11 12356788899999999999999999
Q ss_pred HHHHHhc---CCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-----Cc-cHHHHHHHHHHHhcCCc---hhHHHHH
Q 048799 212 DKMVEEC---EVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-----IT-NVVVWRTLLGACSFHGN---VEMGERV 279 (331)
Q Consensus 212 ~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p-~~~~~~~l~~~~~~~g~---~~~a~~~ 279 (331)
++..+.. +.+....++..+...+.+.|++++|...++++... .| ....+..+...+...|+ +.+|+..
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9988621 22224677888999999999999999999987654 22 23456666677778888 6777777
Q ss_pred HHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhc
Q 048799 280 TRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320 (331)
Q Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (331)
+++.. ..|.....+..++..|...|++++|...+++..+.
T Consensus 326 ~~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 326 FEKKN-LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCC-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 66532 22333456778999999999999999999887653
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.67 E-value=4.9e-15 Score=127.16 Aligned_cols=214 Identities=11% Similarity=-0.030 Sum_probs=180.5
Q ss_pred ChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCch-hHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHH
Q 048799 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDV-RNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK 141 (331)
Q Consensus 63 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 141 (331)
.+++++..+++. ... .+.+...+..+..++...|++ ++|+..|+++++..+. +..++..+..+|...|++++|..
T Consensus 83 ~~~~al~~l~~~-~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 83 EMEKTLQQMEEV-LGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE--LVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHH-HTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHH-hcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHH
Confidence 356677777766 322 235677888999999999999 9999999999998654 78899999999999999999999
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHcc---------CChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhcc--------CCh
Q 048799 142 LFEDISVERKNLVSWTSIISGFAMH---------GMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHG--------GLV 204 (331)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------~~~ 204 (331)
.|+++....|+..++..+...+... |++++|++.|++..+.. +.+...+..+..+|... |++
T Consensus 159 ~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 159 CFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9999998888888899999999999 99999999999998853 33577888899999888 999
Q ss_pred HHHHHHHHHHHHhcCCC---CcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHHHHHH
Q 048799 205 EEGLKFFDKMVEECEVL---PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMGERVT 280 (331)
Q Consensus 205 ~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 280 (331)
++|...|+++.+. . + .+...+..+..+|...|++++|.+.|+++....| +...+..+..++...|++++|.+.+
T Consensus 238 ~~A~~~~~~al~~-~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKV-D-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHH-C-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh-C-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999875 2 2 3778899999999999999999999999887734 5678888889999999998888766
Q ss_pred HHH
Q 048799 281 RKI 283 (331)
Q Consensus 281 ~~~ 283 (331)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 544
No 73
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.67 E-value=1.2e-15 Score=130.25 Aligned_cols=300 Identities=10% Similarity=-0.019 Sum_probs=193.9
Q ss_pred ccchhHHhhhcCC-chHHHHHHHHHHHHHcCCH---HHHHHHHhhCCCCCchhHHHHHHHHHhcC-----ChhHHHHHHH
Q 048799 2 LKDGSKLFDELPE-RNLVTWNVMITGLVKWGEL---EYARSLFEEMPCRNVVSWTGIIDGYTRMN-----RSNGALALFR 72 (331)
Q Consensus 2 ~~~A~~~~~~~~~-p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~ 72 (331)
+++|.++|++..+ .+..++..|...|...|+. ++|..+|++..+.++..+..|...+...+ ++++|+..|+
T Consensus 19 ~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~ 98 (452)
T 3e4b_A 19 TVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLK 98 (452)
T ss_dssp HHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHH
Confidence 4567777776653 2444555666666677777 88888888877666677777777555554 6788888888
Q ss_pred HHHhccCCCCchHHHHHHHHHHhhcCchh---HHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHH----HHHH
Q 048799 73 RMVACEYTEPSEITILAVFPAIWQNGDVR---NCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALK----LFED 145 (331)
Q Consensus 73 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~----~~~~ 145 (331)
+... .+. ++ .+..+...|...+..+ .+.+.+......| ++.....|...|...+.++++.. +++.
T Consensus 99 ~Aa~-~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~ 170 (452)
T 3e4b_A 99 KAFA-NGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYRTQGTYDQHLDDVERICKA 170 (452)
T ss_dssp HHHH-TTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHH
T ss_pred HHHH-CCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 8743 332 22 5556666666555433 3444444444444 33456677888888885555444 4444
Q ss_pred hhhcCCcHHHHHHHHHHHHccC---ChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhcc----CChHHHHHHHHHHHHhc
Q 048799 146 ISVERKNLVSWTSIISGFAMHG---MGKEAVENFERMQKVVLKPNRVTFLSVLNACSHG----GLVEEGLKFFDKMVEEC 218 (331)
Q Consensus 146 ~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~ 218 (331)
.....| .++..+...|...| +.++|++.|++..+.|. ++...+..+...|... +++++|..+|++.. .
T Consensus 171 a~~~~~--~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~- 245 (452)
T 3e4b_A 171 ALNTTD--ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P- 245 (452)
T ss_dssp HTTTCT--THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G-
T ss_pred HHcCCH--HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C-
Confidence 433333 48888888898899 99999999999988763 4555555677777655 78999999999986 3
Q ss_pred CCCCcHhhHHHHHHH-H--HhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCC-----chhHHHHHHHHHHHhhcCC
Q 048799 219 EVLPDIKHYGCLIDM-L--GRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHG-----NVEMGERVTRKILEMERGY 290 (331)
Q Consensus 219 ~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~ 290 (331)
+ +...+..+... + ...|++++|.++|++..+. .++..+..+...|. .| ++++|.+.|+++. |++
T Consensus 246 g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~ 317 (452)
T 3e4b_A 246 G---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GRE 317 (452)
T ss_dssp G---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTC
T ss_pred C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCC
Confidence 3 55566677766 4 4689999999999998765 46777778888877 45 9999999999998 888
Q ss_pred CccHHHHHHHHhh----hccCcchHHHHHHHhhccc
Q 048799 291 GGDYVLMYNILAG----VWRYGDAERLRRVVDERNA 322 (331)
Q Consensus 291 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 322 (331)
+..+..++.+|.. ..+.++|...+++..+.|.
T Consensus 318 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 318 VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 8899999988876 3388889999998877653
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.66 E-value=3.2e-13 Score=112.45 Aligned_cols=292 Identities=10% Similarity=-0.035 Sum_probs=180.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCC----CCCc----hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCch----HHH
Q 048799 20 WNVMITGLVKWGELEYARSLFEEMP----CRNV----VSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSE----ITI 87 (331)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~ 87 (331)
.......+...|++++|...+++.. ..+. .+++.+...+...|++++|...+++........++. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445556677888888888877643 1121 145666677778888888888888774422212222 234
Q ss_pred HHHHHHHhhcCchhHHHHHHhhhhhcC----CC--cchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC------cHHH
Q 048799 88 LAVFPAIWQNGDVRNCQLIHGYGEKRG----FN--AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK------NLVS 155 (331)
Q Consensus 88 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~ 155 (331)
..+...+...|++++|...+++..+.. .. |.....+..+...+...|++++|...+++.....+ ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 556677778888888888888776532 11 21344566677778888888888888887765422 2345
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhccCCCC--HHHHH----HHHHHHhccCChHHHHHHHHHHHHhcCCCC---cHhh
Q 048799 156 WTSIISGFAMHGMGKEAVENFERMQKVVLKPN--RVTFL----SVLNACSHGGLVEEGLKFFDKMVEECEVLP---DIKH 226 (331)
Q Consensus 156 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 226 (331)
+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.... ...+ ....
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~ 255 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHH
Confidence 66677777888888888888887765322211 11111 1223366778888888888776543 2111 1224
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcccC---Cc---cH-HHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHH
Q 048799 227 YGCLIDMLGRAGRLEQAEKVASGIPSE---IT---NV-VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299 (331)
Q Consensus 227 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p---~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 299 (331)
+..+...+...|++++|...++.+... .+ +. ..+..+..++...|+.++|...++++.+..+..... .
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~-----~ 330 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI-----S 330 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCC-----H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHH-----H
Confidence 556677777888888888888776544 11 11 355556677777888888888888888766654221 2
Q ss_pred HHhhhccCcchHHHHHHHhh
Q 048799 300 ILAGVWRYGDAERLRRVVDE 319 (331)
Q Consensus 300 ~~~~~g~~~~a~~~~~~~~~ 319 (331)
.+...| +....+++.+..
T Consensus 331 ~~~~~g--~~~~~ll~~~~~ 348 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQ 348 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHH
T ss_pred HHHHcc--HHHHHHHHHHHh
Confidence 233344 345555555544
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.66 E-value=9.6e-14 Score=115.85 Aligned_cols=235 Identities=11% Similarity=-0.017 Sum_probs=181.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhccCCCCc----hHHHHHHHHHHhhcCchhHHHHHHhhhhhcCC-----CcchhHH
Q 048799 52 TGIIDGYTRMNRSNGALALFRRMVACEYTEPS----EITILAVFPAIWQNGDVRNCQLIHGYGEKRGF-----NAFHIHV 122 (331)
Q Consensus 52 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~ 122 (331)
......+...|++++|+..|+++.......++ ..++..+..++...|+++.|...++++.+... .+....+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 34455678899999999999998543322233 44778889999999999999999998876421 2213567
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhc---CC----cHHHHHHHHHHHHccCChHHHHHHHHHHHhc----cCCCCHHHH
Q 048799 123 SNCLIDTYAKCGCIFSALKLFEDISVE---RK----NLVSWTSIISGFAMHGMGKEAVENFERMQKV----VLKPNRVTF 191 (331)
Q Consensus 123 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~ 191 (331)
++.++.+|...|++++|...|+++... .+ ...++..+..+|...|++++|++.|++.... +.+....++
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 264 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence 888999999999999999999988764 11 2457888999999999999999999998761 222336778
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhcCC---CCcHhhHHHHHHHHHhcCC---HHHHHHHHhhcccCCccHHHHHHHHH
Q 048799 192 LSVLNACSHGGLVEEGLKFFDKMVEECEV---LPDIKHYGCLIDMLGRAGR---LEQAEKVASGIPSEITNVVVWRTLLG 265 (331)
Q Consensus 192 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~l~~ 265 (331)
..+...+.+.|++++|...+++..+...- +.....+..+...+...|+ +.+|...++...........+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 88999999999999999999999875221 1123445666667777888 88999999885443233466778899
Q ss_pred HHhcCCchhHHHHHHHHHHHh
Q 048799 266 ACSFHGNVEMGERVTRKILEM 286 (331)
Q Consensus 266 ~~~~~g~~~~a~~~~~~~~~~ 286 (331)
.|...|++++|...++++.+.
T Consensus 345 ~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999874
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.63 E-value=4.2e-13 Score=111.70 Aligned_cols=269 Identities=10% Similarity=-0.034 Sum_probs=189.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCch----HHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCc----chhH
Q 048799 50 SWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSE----ITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA----FHIH 121 (331)
Q Consensus 50 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 121 (331)
....+...+...|++++|...+++.+.... ..+. .++..+...+...|++++|...+++..+..... ....
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 344455567788999999999998755432 2222 245667778888999999999988877642211 1223
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhhcC--------C-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCC--C--CH
Q 048799 122 VSNCLIDTYAKCGCIFSALKLFEDISVER--------K-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLK--P--NR 188 (331)
Q Consensus 122 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p--~~ 188 (331)
++..+...+...|++++|...+++..... | ....+..+...+...|++++|...+++....... + ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 45678888999999999999998876541 2 2345667778888999999999999887764221 1 23
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCc-HhhHH----HHHHHHHhcCCHHHHHHHHhhcccCCc-----cHH
Q 048799 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD-IKHYG----CLIDMLGRAGRLEQAEKVASGIPSEIT-----NVV 258 (331)
Q Consensus 189 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~p-----~~~ 258 (331)
.++..+...+...|++++|...+++......-... ..... ..+..+...|++++|...+++.....| ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 56777888888999999999999988754111111 11111 233457789999999999998876522 133
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCC------ccHHHHHHHHhhhccCcchHHHHHHHhh
Q 048799 259 VWRTLLGACSFHGNVEMGERVTRKILEMERGYG------GDYVLMYNILAGVWRYGDAERLRRVVDE 319 (331)
Q Consensus 259 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (331)
.+..+...+...|++++|...++++.+..+... ..+..++.++...|+.++|...+++..+
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 566777888889999999999999887543321 3566678888899999999988887655
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.63 E-value=7e-14 Score=108.09 Aligned_cols=208 Identities=7% Similarity=-0.079 Sum_probs=159.8
Q ss_pred CCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHH
Q 048799 81 EPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSI 159 (331)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l 159 (331)
+.|+..+......+...|++++|+..|+++++..+.+ +...+..++.++...|++++|+..|++.....| +..+|..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ-DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 3466788889999999999999999999999987634 667777799999999999999999999988876 56788899
Q ss_pred HHHHHccCChHHHHHHHHHHHhccCCCCH-------HHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCc---HhhHHH
Q 048799 160 ISGFAMHGMGKEAVENFERMQKVVLKPNR-------VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD---IKHYGC 229 (331)
Q Consensus 160 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ 229 (331)
..+|...|++++|+..|++..+.. +.+. ..|..+...+...|++++|.+.|+++.+. .|+ ...+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~ 158 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHH
Confidence 999999999999999999988753 2233 45777888888999999999999998853 454 567777
Q ss_pred HHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHH
Q 048799 230 LIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300 (331)
Q Consensus 230 l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 300 (331)
+...|...|+. +++.+... ..+...|.... ....+.+++|...++++.++.|+++.....+..+
T Consensus 159 l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 159 LGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 88777665543 33333333 22344444333 2345678999999999999999986666555544
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.63 E-value=8.1e-14 Score=103.73 Aligned_cols=170 Identities=15% Similarity=-0.017 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 048799 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198 (331)
Q Consensus 120 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 198 (331)
...+..++..+...|++++|...|+++....| +...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 44556667777777777777777777765544 56667777777777777777777777776642 23556677777777
Q ss_pred hccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHH
Q 048799 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGE 277 (331)
Q Consensus 199 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~ 277 (331)
...|++++|.+.++++.+. .+.+...+..+...+...|++++|...++++... +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 7778888888888777764 2345667777777777888888888887777665 335677777888888888888888
Q ss_pred HHHHHHHHhhcCCCc
Q 048799 278 RVTRKILEMERGYGG 292 (331)
Q Consensus 278 ~~~~~~~~~~~~~~~ 292 (331)
..++++.+..|++..
T Consensus 165 ~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 165 PHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHCCCG
T ss_pred HHHHHHHHcCCCchh
Confidence 888888887777643
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.61 E-value=3.3e-14 Score=126.98 Aligned_cols=170 Identities=11% Similarity=0.062 Sum_probs=119.3
Q ss_pred cchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHH
Q 048799 117 AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVL 195 (331)
Q Consensus 117 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 195 (331)
|.+..+++.|..+|.+.|++++|+..|+++.+..| +..+|+.+..+|.+.|++++|++.|++.++.. +-+...|..+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 44667777788888888888888888887776665 46677777777777888888888887777643 12356677777
Q ss_pred HHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchh
Q 048799 196 NACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVE 274 (331)
Q Consensus 196 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 274 (331)
.++...|++++|++.|+++.+. . +-+...+..+..+|.+.|++++|.+.|+++.+..| +...+..+..++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l-~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI-N-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 7777777777777777777754 1 22556677777777777777777777777666533 4566777777777777777
Q ss_pred HHHHHHHHHHHhhcC
Q 048799 275 MGERVTRKILEMERG 289 (331)
Q Consensus 275 ~a~~~~~~~~~~~~~ 289 (331)
+|.+.++++.++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 777777777765543
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.61 E-value=2e-14 Score=107.01 Aligned_cols=168 Identities=14% Similarity=0.016 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHH
Q 048799 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLID 232 (331)
Q Consensus 153 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (331)
...|..+...+...|++++|+..++++.... +.+...+..+...+...|++++|...++++.+. .+.+...+..++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 4567778888999999999999999987643 346778888999999999999999999999875 2447788899999
Q ss_pred HHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchH
Q 048799 233 MLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311 (331)
Q Consensus 233 ~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 311 (331)
.+...|++++|.+.++++... +.+...+..+...+...|++++|...++++.+..|.++..+..++.++...|++++|.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999998876 4567888999999999999999999999999999998889999999999999999999
Q ss_pred HHHHHHhhcccc
Q 048799 312 RLRRVVDERNAL 323 (331)
Q Consensus 312 ~~~~~~~~~~~~ 323 (331)
..+++..+....
T Consensus 165 ~~~~~~~~~~~~ 176 (186)
T 3as5_A 165 PHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHcCCC
Confidence 999998876543
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.60 E-value=7.2e-14 Score=124.84 Aligned_cols=166 Identities=8% Similarity=0.023 Sum_probs=137.9
Q ss_pred CchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHH
Q 048799 82 PSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSII 160 (331)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~ 160 (331)
.+..+++.+..++.+.|++++|++.|+++++..+. +..++..+..+|.+.|++++|+..|+++.+..| +..+|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~--~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPE--FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34668888889999999999999999998888544 778888899999999999999999998887766 477888888
Q ss_pred HHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCC-cHhhHHHHHHHHHhcCC
Q 048799 161 SGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP-DIKHYGCLIDMLGRAGR 239 (331)
Q Consensus 161 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 239 (331)
.+|...|++++|++.|++..+.. +-+...+..+..++...|++++|++.|+++.+. .| +...+..+..+|...|+
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l---~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL---KPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHhhhhhHHHhccc
Confidence 99999999999999998888743 224678888888899999999999999988875 34 57788888888999999
Q ss_pred HHHHHHHHhhcccC
Q 048799 240 LEQAEKVASGIPSE 253 (331)
Q Consensus 240 ~~~A~~~~~~~~~~ 253 (331)
+++|.+.++++.+.
T Consensus 161 ~~~A~~~~~kal~l 174 (723)
T 4gyw_A 161 WTDYDERMKKLVSI 174 (723)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99998888877654
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.58 E-value=2.3e-13 Score=108.35 Aligned_cols=227 Identities=9% Similarity=-0.005 Sum_probs=146.1
Q ss_pred HhcCChhHHHHHHHHHHhc------cCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhc------CCCcchhHHHHHH
Q 048799 59 TRMNRSNGALALFRRMVAC------EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR------GFNAFHIHVSNCL 126 (331)
Q Consensus 59 ~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l 126 (331)
...|++++|+..|++.+.. ...+....++..+..++...|++++|...++++++. +..|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666665321 111233557777888888888888888888887765 3334356788888
Q ss_pred HHHHHhcCCHhHHHHHHHHhhhc--------CC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhc------cCCC-CHHH
Q 048799 127 IDTYAKCGCIFSALKLFEDISVE--------RK-NLVSWTSIISGFAMHGMGKEAVENFERMQKV------VLKP-NRVT 190 (331)
Q Consensus 127 ~~~~~~~g~~~~A~~~~~~~~~~--------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~ 190 (331)
..+|...|++++|...|+++... .| ...++..+...|...|++++|+..++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88899999999999888887654 13 3567788888888899999999988888764 1123 3456
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhc------CCCC-cHhhHHHHHHHHHhc------CCHHHHHHHHhhcccCCc-c
Q 048799 191 FLSVLNACSHGGLVEEGLKFFDKMVEEC------EVLP-DIKHYGCLIDMLGRA------GRLEQAEKVASGIPSEIT-N 256 (331)
Q Consensus 191 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p-~ 256 (331)
+..+...+...|++++|..+++++.+.. ...+ ....+..+...+... ..+..+...++......| .
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 7788888888899999998888887531 1122 222333333333322 224444445555444422 3
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 257 VVVWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 257 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
..++..+...|...|++++|...++++++
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46677778888888888888888887764
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.57 E-value=1.2e-13 Score=106.87 Aligned_cols=192 Identities=12% Similarity=-0.036 Sum_probs=151.9
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC--CcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCC-CHHHHHHHH
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVER--KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP-NRVTFLSVL 195 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~ 195 (331)
++..+...+..+...|++++|...|+++.... ++...+..+..++...|++++|++.|++..+. .| +...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 67788889999999999999999999998775 56777777899999999999999999999874 34 456788899
Q ss_pred HHHhccCChHHHHHHHHHHHHhcCCCCcH-------hhHHHHHHHHHhcCCHHHHHHHHhhcccCCcc---HHHHHHHHH
Q 048799 196 NACSHGGLVEEGLKFFDKMVEECEVLPDI-------KHYGCLIDMLGRAGRLEQAEKVASGIPSEITN---VVVWRTLLG 265 (331)
Q Consensus 196 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~ 265 (331)
..+...|++++|...+++..+. .+.+. ..|..+...+...|++++|.+.|+++....|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 9999999999999999999875 22344 45788888899999999999999999988554 577777888
Q ss_pred HHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 266 ACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 266 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
++...| ...++++..+.+.....|.. ......+.+++|...+++..+..
T Consensus 162 ~~~~~~-----~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-----HHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhcC
Confidence 876544 44566666655554333433 33445677889999999887754
No 84
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.54 E-value=1e-11 Score=98.18 Aligned_cols=242 Identities=8% Similarity=-0.025 Sum_probs=168.7
Q ss_pred HHHcCCHHHHHHHHhhCCCCCc-hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHH
Q 048799 27 LVKWGELEYARSLFEEMPCRNV-VSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQL 105 (331)
Q Consensus 27 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 105 (331)
..-.|++..++.-...+...+. ..-.-+.+++...|++... + ...|....+..+...+ ..+ |+.
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~------~----~~~~~~~a~~~la~~~-~~~----a~~ 87 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ------D----PTSKLGKVLDLYVQFL-DTK----NIE 87 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC------C----SSSTTHHHHHHHHHHH-TTT----CCH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC------C----CCCHHHHHHHHHHHHh-ccc----HHH
Confidence 3457888888886666653222 2333455788888887742 1 1234443444444333 322 778
Q ss_pred HHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC---cHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 048799 106 IHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK---NLVSWTSIISGFAMHGMGKEAVENFERMQKV 182 (331)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 182 (331)
.+++..+.+. + +...+..++.++...|++++|++++.+.....| +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 88 ~l~~l~~~~~-~-~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~- 164 (310)
T 3mv2_B 88 ELENLLKDKQ-N-SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN- 164 (310)
T ss_dssp HHHHTTTTSC-C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHhcCC-C-CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 8888877652 2 444556888999999999999999998866653 567788888999999999999999999977
Q ss_pred cCCC-----CHHHHHHHHHH--HhccC--ChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC
Q 048799 183 VLKP-----NRVTFLSVLNA--CSHGG--LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253 (331)
Q Consensus 183 ~~~p-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 253 (331)
..| +..+...|+.+ ....| ++.+|..+|+++.+. .|+..+-..+..++.+.|++++|.+.++.+...
T Consensus 165 -~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 -AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp -HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred -cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456 35566666666 33334 899999999998754 455333334444788999999999999876543
Q ss_pred -----------CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCc
Q 048799 254 -----------ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG 292 (331)
Q Consensus 254 -----------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 292 (331)
+.++.+...+|......|+ +|.++++++.+..|+++.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 2356777566666666676 889999999999998743
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.53 E-value=4.7e-13 Score=106.58 Aligned_cols=203 Identities=10% Similarity=0.025 Sum_probs=130.4
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHHHHHhcc-----C-CCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhc------CC
Q 048799 48 VVSWTGIIDGYTRMNRSNGALALFRRMVACE-----Y-TEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR------GF 115 (331)
Q Consensus 48 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~ 115 (331)
..++..+...+...|++++|+..+++++... + .+....++..+..++...|++++|...++++++. ..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 3467777788888888888888888774331 1 1223456777888888888888888888887765 22
Q ss_pred CcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc--------CC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhcc---
Q 048799 116 NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE--------RK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVV--- 183 (331)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--- 183 (331)
.|....++..+..++...|++++|...|+++... .| ...++..+...|...|++++|+..++++....
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 2335677788888888888888888888887655 33 34567788888888888888888888876531
Q ss_pred ----CCCCH-HHHHHHHHHHhccCChH------HHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhccc
Q 048799 184 ----LKPNR-VTFLSVLNACSHGGLVE------EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252 (331)
Q Consensus 184 ----~~p~~-~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 252 (331)
..+.. ..+..+...+...+... .+...+..... ..+....++..+...|...|++++|..+++++..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12221 22332333333222222 22222222110 1112456777888888999999999998887654
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.53 E-value=6.7e-13 Score=104.79 Aligned_cols=208 Identities=9% Similarity=-0.046 Sum_probs=119.4
Q ss_pred chHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCc-chhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc----HHHHH
Q 048799 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA-FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN----LVSWT 157 (331)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~ 157 (331)
+...+..+...+...|++++|+..|+++++..+.. ....++..++.+|.+.|++++|...|+++....|+ ..++.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 34455555555566666666666666666553321 01445555566666666666666666666554331 23444
Q ss_pred HHHHHHHc--------cCChHHHHHHHHHHHhccCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHH
Q 048799 158 SIISGFAM--------HGMGKEAVENFERMQKVVLKPNR-VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG 228 (331)
Q Consensus 158 ~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 228 (331)
.+..++.. .|++++|+..|+++.... |+. ..... ...+...... ....+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a--------------~~~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDA--------------TQKIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHH--------------HHHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHH--------------HHHHHHHHHH-----HHHHHH
Confidence 45555555 555666666665555432 221 11110 0001111100 011235
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcccCCcc----HHHHHHHHHHHhcC----------CchhHHHHHHHHHHHhhcCCCc--
Q 048799 229 CLIDMLGRAGRLEQAEKVASGIPSEITN----VVVWRTLLGACSFH----------GNVEMGERVTRKILEMERGYGG-- 292 (331)
Q Consensus 229 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~-- 292 (331)
.+...|.+.|++++|...|+.+....|+ ...+..+..+|... |++++|...++++.+..|+++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 6678888999999999999988766343 46777778888765 8889999999999999998853
Q ss_pred -cHHHHHHHHhhhccCcchH
Q 048799 293 -DYVLMYNILAGVWRYGDAE 311 (331)
Q Consensus 293 -~~~~l~~~~~~~g~~~~a~ 311 (331)
....+..++...++++++.
T Consensus 233 ~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 3344555555555554443
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.52 E-value=8.2e-13 Score=106.09 Aligned_cols=211 Identities=9% Similarity=-0.050 Sum_probs=144.2
Q ss_pred ChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhc----CCCcchhHHHHHHHHHHHhcCCHhH
Q 048799 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR----GFNAFHIHVSNCLIDTYAKCGCIFS 138 (331)
Q Consensus 63 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~ 138 (331)
++++|...|++. ...+...|++++|...|.++.+. |..+....+++.+..+|.+.|++++
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 367777777665 23466778888888888877654 2222135678888888888899999
Q ss_pred HHHHHHHhhhcCC---c----HHHHHHHHHHHHcc-CChHHHHHHHHHHHhccCCC-C----HHHHHHHHHHHhccCChH
Q 048799 139 ALKLFEDISVERK---N----LVSWTSIISGFAMH-GMGKEAVENFERMQKVVLKP-N----RVTFLSVLNACSHGGLVE 205 (331)
Q Consensus 139 A~~~~~~~~~~~~---~----~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p-~----~~~~~~l~~~~~~~~~~~ 205 (331)
|+..|++.....+ + ..+++.+...|... |++++|+..|++..+..... + ..++..+...+...|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 8888888765522 1 35677888888885 99999999988877632110 1 346778888888899999
Q ss_pred HHHHHHHHHHHhcCCC-CcH-----hhHHHHHHHHHhcCCHHHHHHHHhhcccCCccH------HHHHHHHHHHh--cCC
Q 048799 206 EGLKFFDKMVEECEVL-PDI-----KHYGCLIDMLGRAGRLEQAEKVASGIPSEITNV------VVWRTLLGACS--FHG 271 (331)
Q Consensus 206 ~a~~~~~~~~~~~~~~-~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~l~~~~~--~~g 271 (331)
+|...|+++.+. ... +.. ..+..+..++...|++++|...|++.....|+. ..+..++.++. ..+
T Consensus 176 ~A~~~~~~al~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 176 EASDIYSKLIKS-SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHHT-TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHH-HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 999999988875 221 111 146677778888899999999999888763432 12344555553 456
Q ss_pred chhHHHHHHHHHHHhhcCC
Q 048799 272 NVEMGERVTRKILEMERGY 290 (331)
Q Consensus 272 ~~~~a~~~~~~~~~~~~~~ 290 (331)
++++|...|+++.+++|..
T Consensus 255 ~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 255 QLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp THHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHhccCCccHHHH
Confidence 6777777777766555543
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.51 E-value=1.3e-11 Score=97.69 Aligned_cols=243 Identities=9% Similarity=-0.015 Sum_probs=175.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcC
Q 048799 55 IDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134 (331)
Q Consensus 55 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 134 (331)
++-..-.|.+..++.-..++ ....++ ....-+.+++...|+++.. ....| ...++..+.. |...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~---~~~~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~-~~~a~~~la~-~~~~~ 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKF---SKVTDN-TLLFYKAKTLLALGQYQSQ---------DPTSK-LGKVLDLYVQ-FLDTK 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTS---SCCCCH-HHHHHHHHHHHHTTCCCCC---------CSSST-THHHHHHHHH-HHTTT
T ss_pred HHHHHHhhHHHHHHHHHHhc---CccchH-HHHHHHHHHHHHcCCCccC---------CCCCH-HHHHHHHHHH-Hhccc
Confidence 34455679999988844433 222232 3444466888888887642 12233 4434444443 33322
Q ss_pred CHhHHHHHHHHhhhc-CCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhccCChHHHHHHHH
Q 048799 135 CIFSALKLFEDISVE-RKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVL-KPNRVTFLSVLNACSHGGLVEEGLKFFD 212 (331)
Q Consensus 135 ~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 212 (331)
|+..|++.... .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++
T Consensus 85 ----a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 ----NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp ----CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 78888887765 35666667888999999999999999999876553 2356778888999999999999999999
Q ss_pred HHHHhcCCCC-----cHhhHHHHHHH--HHhcC--CHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 048799 213 KMVEECEVLP-----DIKHYGCLIDM--LGRAG--RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKI 283 (331)
Q Consensus 213 ~~~~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 283 (331)
+|.+. .| +..+...++.+ ....| +..+|..+|+++....|+..+-..+..++.+.|++++|++.++.+
T Consensus 161 ~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 161 NYTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99765 56 35666666666 33344 899999999999888776334444455889999999999999987
Q ss_pred HHh----------hcCCCccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 284 LEM----------ERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 284 ~~~----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
.+. +|+++.+...++......|+ +|.++++++.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 765 47788888788888777886 8999999988754
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.48 E-value=4.4e-12 Score=101.83 Aligned_cols=210 Identities=13% Similarity=-0.012 Sum_probs=157.4
Q ss_pred CHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhcc---CCCCc-hHHHHHHHHHHhhcCchhHHHHHH
Q 048799 32 ELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACE---YTEPS-EITILAVFPAIWQNGDVRNCQLIH 107 (331)
Q Consensus 32 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 107 (331)
++++|...|++. ...|...|++++|...|++..... +.+++ ..+|+.+..++...|++++|+..+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 488888887765 556888999999999998874432 22222 468889999999999999999999
Q ss_pred hhhhhcCCC----cchhHHHHHHHHHHHhc-CCHhHHHHHHHHhhhcCCc-------HHHHHHHHHHHHccCChHHHHHH
Q 048799 108 GYGEKRGFN----AFHIHVSNCLIDTYAKC-GCIFSALKLFEDISVERKN-------LVSWTSIISGFAMHGMGKEAVEN 175 (331)
Q Consensus 108 ~~~~~~~~~----~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~ 175 (331)
+++++.... .....+++.+..+|... |++++|+..|++.....|+ ..+++.+...+.+.|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 988765321 11245788899999996 9999999999998765331 35688899999999999999999
Q ss_pred HHHHHhccCCCCH------HHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcH------hhHHHHHHHHH--hcCCHH
Q 048799 176 FERMQKVVLKPNR------VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDI------KHYGCLIDMLG--RAGRLE 241 (331)
Q Consensus 176 ~~~m~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~g~~~ 241 (331)
|++.......... ..+..+..++...|++++|...|++..+ +.|+. ..+..++..+. ..++++
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999875422221 2567788889999999999999999874 33432 13444556564 457799
Q ss_pred HHHHHHhhcccCCc
Q 048799 242 QAEKVASGIPSEIT 255 (331)
Q Consensus 242 ~A~~~~~~~~~~~p 255 (331)
+|.+.|+.+....|
T Consensus 258 ~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 258 EHCKEFDNFMRLDK 271 (292)
T ss_dssp HHHHHHTTSSCCCH
T ss_pred HHHHHhccCCccHH
Confidence 99999999887634
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.45 E-value=6.7e-12 Score=99.04 Aligned_cols=171 Identities=8% Similarity=-0.046 Sum_probs=90.1
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCc-hHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCC-cchhHHHH
Q 048799 47 NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPS-EITILAVFPAIWQNGDVRNCQLIHGYGEKRGFN-AFHIHVSN 124 (331)
Q Consensus 47 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 124 (331)
+...+..+...+.+.|++++|+..|++++...+..|. ...+..+..++...|++++|...|+++++..+. +....++.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3444555555556666666666666665332211111 345555555666666666666666666655331 11334455
Q ss_pred HHHHHHHh--------cCCHhHHHHHHHHhhhcCCc-HHHH-----------------HHHHHHHHccCChHHHHHHHHH
Q 048799 125 CLIDTYAK--------CGCIFSALKLFEDISVERKN-LVSW-----------------TSIISGFAMHGMGKEAVENFER 178 (331)
Q Consensus 125 ~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~-~~~~-----------------~~l~~~~~~~~~~~~a~~~~~~ 178 (331)
.+..++.. .|++++|...|+++....|+ .... ..+...|.+.|++++|+..|++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55556655 66666666666666554442 2222 3445556666666666666666
Q ss_pred HHhccCCC--CHHHHHHHHHHHhcc----------CChHHHHHHHHHHHHh
Q 048799 179 MQKVVLKP--NRVTFLSVLNACSHG----------GLVEEGLKFFDKMVEE 217 (331)
Q Consensus 179 m~~~~~~p--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 217 (331)
+.+..... ....+..+..+|... |++++|...|+++.+.
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 65532111 123444555555544 5666666666666654
No 91
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.42 E-value=2.5e-11 Score=108.80 Aligned_cols=172 Identities=10% Similarity=-0.032 Sum_probs=145.0
Q ss_pred hhcCchhHHHHHHhhhh--------hcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHc
Q 048799 95 WQNGDVRNCQLIHGYGE--------KRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAM 165 (331)
Q Consensus 95 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 165 (331)
...|++++|++.+++++ +. .|.+...+..+..++...|++++|+..|+++....| +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 68899999999999998 44 343778888999999999999999999999988766 67899999999999
Q ss_pred cCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHH
Q 048799 166 HGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 245 (331)
Q Consensus 166 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 245 (331)
.|++++|++.|++..+.. +-+...+..+..++...|++++ .+.|+++.+. -+.+...+..+..++.+.|++++|.+
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999998854 2256778889999999999999 9999999875 23367889999999999999999999
Q ss_pred HHhhcccCCcc-HHHHHHHHHHHhcCCc
Q 048799 246 VASGIPSEITN-VVVWRTLLGACSFHGN 272 (331)
Q Consensus 246 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 272 (331)
.|+++....|+ ...+..+..++...++
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999988554 6778888888877665
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.41 E-value=1.4e-11 Score=93.57 Aligned_cols=129 Identities=9% Similarity=-0.009 Sum_probs=83.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcC
Q 048799 159 IISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238 (331)
Q Consensus 159 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 238 (331)
+..+|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++.+. -+.+...+..+...|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHh
Confidence 6677777777777777777777643 224566777777777778888888887777764 1235666777776665554
Q ss_pred C--HHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCC
Q 048799 239 R--LEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 290 (331)
Q Consensus 239 ~--~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 290 (331)
+ ...+...+..+....|....+.....++...|++++|+..|++++++.|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 3 345556666655433333344445556666778888888888888777763
No 93
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.41 E-value=6.6e-10 Score=98.40 Aligned_cols=168 Identities=9% Similarity=-0.024 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHccCChHHHH-HHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhc---------CCCC
Q 048799 153 LVSWTSIISGFAMHGMGKEAV-ENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEEC---------EVLP 222 (331)
Q Consensus 153 ~~~~~~l~~~~~~~~~~~~a~-~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~ 222 (331)
...|...+..+...|+.++|. ++|++.... ++.+...+...+....+.|+++.|.++|+.+.... +.+.
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 444555555555666777775 777777652 33455555666666777788888888888777531 1111
Q ss_pred -----------cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-C-ccHHHHHHHHHHHhcC-CchhHHHHHHHHHHHhhc
Q 048799 223 -----------DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-I-TNVVVWRTLLGACSFH-GNVEMGERVTRKILEMER 288 (331)
Q Consensus 223 -----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~ 288 (331)
...+|...+....+.|..+.|..+|.++... . +....|...+..-.+. ++++.|.++|+.+++..|
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p 501 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA 501 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence 1235666777777778888888888887654 1 1234444333333333 447888888888888777
Q ss_pred CCCccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 289 GYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 289 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
+++..+..++......|+.+.|..+|++..+..
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 776666677777777788888888888776643
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.41 E-value=3.2e-11 Score=91.65 Aligned_cols=135 Identities=12% Similarity=-0.027 Sum_probs=82.8
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccC
Q 048799 124 NCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202 (331)
Q Consensus 124 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 202 (331)
..+..+|.+.|++++|...|+++....| +...+..+..++...|++++|+..|++..+.. +.+...+..+..+|...|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 3477777777777777777777776655 46677777777777777777777777777643 224556666666665444
Q ss_pred C--hHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHH
Q 048799 203 L--VEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRT 262 (331)
Q Consensus 203 ~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 262 (331)
+ .+.+...+.... ...|....+.....++...|++++|...|+++....|+......
T Consensus 137 ~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 195 (208)
T 3urz_A 137 EQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3 333444444432 22222333344455566677788888888877777666544433
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.39 E-value=2e-12 Score=115.84 Aligned_cols=172 Identities=12% Similarity=-0.009 Sum_probs=148.3
Q ss_pred HhcCCHhHHHHHHHHhh--------hcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhcc
Q 048799 131 AKCGCIFSALKLFEDIS--------VERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHG 201 (331)
Q Consensus 131 ~~~g~~~~A~~~~~~~~--------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 201 (331)
...|++++|++.++++. ...| +...+..+..++...|++++|++.|+++.+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 78899999999999997 5545 56789999999999999999999999998854 23667888899999999
Q ss_pred CChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHH
Q 048799 202 GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVT 280 (331)
Q Consensus 202 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~ 280 (331)
|++++|...|+++.+. .+.+...+..+..++.+.|++++ .+.|+++... +.+...|..+..++...|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999975 23367888999999999999999 9999998877 446789999999999999999999999
Q ss_pred HHHHHhhcCCCccHHHHHHHHhhhcc
Q 048799 281 RKILEMERGYGGDYVLMYNILAGVWR 306 (331)
Q Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~~~g~ 306 (331)
+++.+.+|++...+..++.++...++
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999988899999999877665
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.38 E-value=9.5e-13 Score=94.52 Aligned_cols=143 Identities=7% Similarity=-0.098 Sum_probs=101.0
Q ss_pred HHHHHccCChHHHHHHHHHHHhccCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcC
Q 048799 160 ISGFAMHGMGKEAVENFERMQKVVLKPN-RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238 (331)
Q Consensus 160 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 238 (331)
...+...|++++|+..+++.... .|+ ...+..+...|.+.|++++|++.|+++.+. -+-+...|..+..+|.+.|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 34455566777777777766542 232 334556677777778888888888777764 1236677777888888888
Q ss_pred CHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHHHHH-HHHHHHhhcCCCccHHHHHHHHhhhcc
Q 048799 239 RLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMGERV-TRKILEMERGYGGDYVLMYNILAGVWR 306 (331)
Q Consensus 239 ~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 306 (331)
++++|...|+++.+..| ++..|..+...+.+.|++++|.+. ++++.+++|+++.+|.....++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888888776634 577888888888888888776654 588888888888888877777777664
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.38 E-value=4.2e-11 Score=92.19 Aligned_cols=203 Identities=13% Similarity=0.001 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCc-chhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcH----HHHHH
Q 048799 84 EITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA-FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNL----VSWTS 158 (331)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~ 158 (331)
...+..+...+...|++++|+..|+++++..+.. ....++..++.+|.+.|++++|...|+++....|+. .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3445555666667777777777777776654331 123455666677777777777777777766554432 13333
Q ss_pred HHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCc-HhhHHHHHHHHHhc
Q 048799 159 IISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD-IKHYGCLIDMLGRA 237 (331)
Q Consensus 159 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 237 (331)
+..++...+.. .+ ..|..+...+...|++++|...|+++++. .|+ ..........-
T Consensus 84 ~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~--- 140 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV--- 140 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH---
T ss_pred HHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH---
Confidence 44444332210 00 01122233334567778888888887754 232 22222111100
Q ss_pred CCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCC---ccHHHHHHHHhhhccCcchHHHH
Q 048799 238 GRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG---GDYVLMYNILAGVWRYGDAERLR 314 (331)
Q Consensus 238 g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~ 314 (331)
... .. .......+...+.+.|++++|+..|+++++..|+++ ..+..++.++.+.|++++|.+.+
T Consensus 141 -~~~------~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 141 -FLK------DR------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp -HHH------HH------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -HHH------HH------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 000 00 011123355667777788888888888777777654 35667777777788888887777
Q ss_pred HHHhhccc
Q 048799 315 RVVDERNA 322 (331)
Q Consensus 315 ~~~~~~~~ 322 (331)
+.+...+.
T Consensus 208 ~~l~~~~~ 215 (225)
T 2yhc_A 208 KIIAANSS 215 (225)
T ss_dssp HHHHHCCS
T ss_pred HHHHhhCC
Confidence 77766543
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.38 E-value=3.9e-11 Score=83.96 Aligned_cols=129 Identities=16% Similarity=0.202 Sum_probs=56.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHh
Q 048799 157 TSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236 (331)
Q Consensus 157 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 236 (331)
..+...+...|++++|..+++++...+ +.+...+..+...+...|++++|..+++++.+. . +.+...+..+...+..
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCchHHHHHHHHHHHH
Confidence 333444444444444444444443322 122333444444444444444444444444432 1 1233344444444444
Q ss_pred cCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc
Q 048799 237 AGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMER 288 (331)
Q Consensus 237 ~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 288 (331)
.|++++|.++++.+... +.+...+..++..+...|++++|...++++.+..|
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 44444444444444333 22334444455555555555555555555554444
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.38 E-value=1.2e-11 Score=86.62 Aligned_cols=130 Identities=15% Similarity=0.151 Sum_probs=115.3
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHh
Q 048799 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACS 268 (331)
Q Consensus 190 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~ 268 (331)
.+..+...+...|++++|..+++++.+. . +.+...+..++..+...|++++|..+++++... +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4667888899999999999999999875 2 346778888999999999999999999998776 446788889999999
Q ss_pred cCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 269 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 269 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
..|++++|.+.++++.+..|.+...+..++.++...|++++|...++++.+..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 99999999999999999999888889999999999999999999999987654
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.38 E-value=5.2e-11 Score=91.67 Aligned_cols=164 Identities=6% Similarity=-0.137 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc----HHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCH----HHHH
Q 048799 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKN----LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR----VTFL 192 (331)
Q Consensus 121 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~ 192 (331)
..+..++..+...|++++|...|+++....|+ ..++..+..+|.+.|++++|+..|+++.+.. |+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHH
Confidence 34445566666667777777777666654332 2355556666666666666666666666533 221 1222
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccH-HHHHHHHHHHhcCC
Q 048799 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNV-VVWRTLLGACSFHG 271 (331)
Q Consensus 193 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 271 (331)
.+..++...|.. .+ ..+..+...+...|++++|...|+++....|+. ..+......
T Consensus 83 ~~g~~~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l----- 139 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL-------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL----- 139 (225)
T ss_dssp HHHHHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH-----
T ss_pred HHHHHHHhhhhh-----hh-------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH-----
Confidence 233333222110 00 011122233344566666666666666553332 111111000
Q ss_pred chhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 272 NVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 272 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
..+.... ......++..|.+.|++++|...++.+.+..
T Consensus 140 -----~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 177 (225)
T 2yhc_A 140 -----VFLKDRL-------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY 177 (225)
T ss_dssp -----HHHHHHH-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred -----HHHHHHH-------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC
Confidence 0000000 0122467888999999999999999988754
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.33 E-value=1.8e-10 Score=87.69 Aligned_cols=175 Identities=11% Similarity=-0.037 Sum_probs=86.8
Q ss_pred chhHHhhhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHhhCCC-CCchhHHHHHHHHHhcC----ChhHHHHHHHHHHhc
Q 048799 4 DGSKLFDELP-ERNLVTWNVMITGLVKWGELEYARSLFEEMPC-RNVVSWTGIIDGYTRMN----RSNGALALFRRMVAC 77 (331)
Q Consensus 4 ~A~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~ 77 (331)
+|.+.|++.. ..+..++..+...|...+++++|..+|++..+ .++.++..|...|.. + ++++|+..|++...
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~- 81 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE- 81 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-
Confidence 4555555544 33555555566666666666666666655442 244455555555554 4 55556665555522
Q ss_pred cCCCCchHHHHHHHHHHhh----cCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHh----cCCHhHHHHHHHHhhhc
Q 048799 78 EYTEPSEITILAVFPAIWQ----NGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK----CGCIFSALKLFEDISVE 149 (331)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 149 (331)
. -++..+..+...|.. .+++++|...|++..+.+.....+..+..|..+|.. .+++++|...|++....
T Consensus 82 ~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 82 A---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp T---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred C---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 1 233444445444444 455555555555555554320023444455555555 44555555555555443
Q ss_pred CCcHHHHHHHHHHHHcc-C-----ChHHHHHHHHHHHhcc
Q 048799 150 RKNLVSWTSIISGFAMH-G-----MGKEAVENFERMQKVV 183 (331)
Q Consensus 150 ~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~m~~~~ 183 (331)
+.+..++..+...|... | ++++|+..|++..+.|
T Consensus 159 ~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 159 SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 33334444444444322 1 4555555555554443
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.33 E-value=2.1e-10 Score=91.71 Aligned_cols=163 Identities=12% Similarity=-0.059 Sum_probs=112.2
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHH-HHHH
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFL-SVLN 196 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~l~~ 196 (331)
+...+..+...+...|++++|...|+++....| +...+..+...+...|++++|+..++++.... |+..... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHH
Confidence 556666777777777888888888877776655 46677777777777788888888777776543 4443222 2222
Q ss_pred HHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCcc---HHHHHHHHHHHhcCCch
Q 048799 197 ACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN---VVVWRTLLGACSFHGNV 273 (331)
Q Consensus 197 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~ 273 (331)
.+...++.++|...+++..+. .+.+...+..+...+...|++++|...|.++....|+ ...+..++..+...|+.
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 355666677777777777664 2336677777777788888888888888777766332 56677777778778888
Q ss_pred hHHHHHHHHHHH
Q 048799 274 EMGERVTRKILE 285 (331)
Q Consensus 274 ~~a~~~~~~~~~ 285 (331)
++|...+++.+.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 888877777654
No 103
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.32 E-value=9.3e-11 Score=94.77 Aligned_cols=202 Identities=9% Similarity=-0.004 Sum_probs=90.4
Q ss_pred hcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHH
Q 048799 60 RMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSA 139 (331)
Q Consensus 60 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 139 (331)
..|++++|.+++++..+... .. .+...++++.|...|.+ .+..|...|++++|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~--~~---------~~~~~~~~~~A~~~~~~----------------a~~~~~~~g~~~~A 55 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK--TS---------FMKWKPDYDSAASEYAK----------------AAVAFKNAKQLEQA 55 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC--CC---------SSSCSCCHHHHHHHHHH----------------HHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc--cc---------ccCCCCCHHHHHHHHHH----------------HHHHHHHcCCHHHH
Confidence 46788999999998743211 00 00002334444333322 22334444555555
Q ss_pred HHHHHHhhhcC-----C--cHHHHHHHHHHHHccCChHHHHHHHHHHHhccC---CC--CHHHHHHHHHHHhccCChHHH
Q 048799 140 LKLFEDISVER-----K--NLVSWTSIISGFAMHGMGKEAVENFERMQKVVL---KP--NRVTFLSVLNACSHGGLVEEG 207 (331)
Q Consensus 140 ~~~~~~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p--~~~~~~~l~~~~~~~~~~~~a 207 (331)
...|.++.... + ...+|+.+...|...|++++|+..|++....-. .| ...++..+...|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 55554443321 0 123444444555555555555555554433210 01 12334444445544 555555
Q ss_pred HHHHHHHHHhcCCCC----cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC---Ccc----HHHHHHHHHHHhcCCchhHH
Q 048799 208 LKFFDKMVEECEVLP----DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE---ITN----VVVWRTLLGACSFHGNVEMG 276 (331)
Q Consensus 208 ~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~l~~~~~~~g~~~~a 276 (331)
+..|++..+...-.. ...++..+...|.+.|++++|...|+++... .+. ...+..++.++...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 555555443210000 1234444555555555555555555554433 011 12333444444455555555
Q ss_pred HHHHHHHHHhhcCC
Q 048799 277 ERVTRKILEMERGY 290 (331)
Q Consensus 277 ~~~~~~~~~~~~~~ 290 (331)
...|+++. ..|..
T Consensus 215 ~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 215 QKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHT-TSTTS
T ss_pred HHHHHHHh-CCCCC
Confidence 55555555 54543
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.32 E-value=4.1e-11 Score=88.46 Aligned_cols=157 Identities=13% Similarity=-0.025 Sum_probs=80.9
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHH-Hhcc
Q 048799 124 NCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA-CSHG 201 (331)
Q Consensus 124 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~ 201 (331)
..+...+...|++++|...|+++....| +...+..+...+...|++++|+..|++..... |+......+... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 3455566666666666666666655544 45566666666666666666666666655432 233222211111 1111
Q ss_pred CChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCcc---HHHHHHHHHHHhcCCchhHHHH
Q 048799 202 GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN---VVVWRTLLGACSFHGNVEMGER 278 (331)
Q Consensus 202 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~ 278 (331)
+...+|...+++..+. .+.+...+..+...+...|++++|...|+++....|+ ...+..+..++...|+.++|..
T Consensus 88 ~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 88 AAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred cccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 1222345555555543 1223455555555555555555555555555544332 3345555555555555555555
Q ss_pred HHHHHH
Q 048799 279 VTRKIL 284 (331)
Q Consensus 279 ~~~~~~ 284 (331)
.|++.+
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.32 E-value=4.8e-11 Score=104.98 Aligned_cols=151 Identities=9% Similarity=-0.072 Sum_probs=70.5
Q ss_pred CchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHH
Q 048799 98 GDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENF 176 (331)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 176 (331)
|++++|...++++.+..+. +...+..+...+...|++++|...|++.....| +..++..+..+|...|++++|++.|
T Consensus 3 g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ--DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4556666666665554332 455555566666666666666666666555544 3455555555555666666666666
Q ss_pred HHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhc---CCHHHHHHHHhhcccC
Q 048799 177 ERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA---GRLEQAEKVASGIPSE 253 (331)
Q Consensus 177 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 253 (331)
++..+.. +.+...+..+..++...|++++|.+.++++.+. .+.+...+..+...+... |+.++|.+.++++...
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 5555432 123445555555555555555555555555543 112344444555555555 5555555555554443
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.32 E-value=7.9e-11 Score=86.91 Aligned_cols=156 Identities=12% Similarity=-0.001 Sum_probs=81.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHH-Hh
Q 048799 20 WNVMITGLVKWGELEYARSLFEEMPC---RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPA-IW 95 (331)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 95 (331)
+..+...+.+.|++++|...|++..+ .+...+..+...+...|++++|+..|+++.... |++..+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHHHHH
Confidence 33455556666666666666666652 244556666666666666666666666653222 222222211111 11
Q ss_pred hcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc---HHHHHHHHHHHHccCChHHH
Q 048799 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN---LVSWTSIISGFAMHGMGKEA 172 (331)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 172 (331)
..+...+|...++++++..+. +...+..+..++...|++++|...|+++....|+ ...+..+...+...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD--NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 112223345555555555332 4555555666666666666666666665555442 33555555555556666666
Q ss_pred HHHHHHHH
Q 048799 173 VENFERMQ 180 (331)
Q Consensus 173 ~~~~~~m~ 180 (331)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555443
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.32 E-value=7.4e-11 Score=94.35 Aligned_cols=175 Identities=9% Similarity=-0.033 Sum_probs=114.5
Q ss_pred HHHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCc
Q 048799 38 SLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA 117 (331)
Q Consensus 38 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 117 (331)
..+......+...+..+...+...|++++|...|++++... +.+...+..+..++...|++++|...++++....+.
T Consensus 107 ~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~- 183 (287)
T 3qou_A 107 ALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD- 183 (287)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-
T ss_pred HHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-
Confidence 33333333344556666777777777777777777774432 234566777777777777888888777777766443
Q ss_pred chhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCC-CHHHHHHHH
Q 048799 118 FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP-NRVTFLSVL 195 (331)
Q Consensus 118 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~ 195 (331)
...........+...++.++|...|++.....| +...+..+...+...|++++|+..|.++.+..... +...+..++
T Consensus 184 -~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~ 262 (287)
T 3qou_A 184 -TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQ 262 (287)
T ss_dssp -HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred -hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 333333344446666777777777777766655 46677777777777788888888887777643211 145667777
Q ss_pred HHHhccCChHHHHHHHHHHHH
Q 048799 196 NACSHGGLVEEGLKFFDKMVE 216 (331)
Q Consensus 196 ~~~~~~~~~~~a~~~~~~~~~ 216 (331)
..+...|+.++|...+++...
T Consensus 263 ~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 263 EILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHcCCCCcHHHHHHHHHH
Confidence 777777777777777776554
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.31 E-value=4.2e-10 Score=85.67 Aligned_cols=175 Identities=8% Similarity=-0.112 Sum_probs=112.7
Q ss_pred HHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccC----ChHHHHHHHH
Q 048799 102 NCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG----MGKEAVENFE 177 (331)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 177 (331)
+|.+.|++..+.| ++.++..|...|...+++++|...|++.... .++.++..+...|.. + ++++|+++|+
T Consensus 4 eA~~~~~~aa~~g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAEAG----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHHTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 4666777776664 4556667777777778888888888777543 355666666666666 5 7777777777
Q ss_pred HHHhccCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhcCCC-CcHhhHHHHHHHHHh----cCCHHHHHHHHh
Q 048799 178 RMQKVVLKPNRVTFLSVLNACSH----GGLVEEGLKFFDKMVEECEVL-PDIKHYGCLIDMLGR----AGRLEQAEKVAS 248 (331)
Q Consensus 178 ~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 248 (331)
+..+.| +...+..|...|.. .+++++|..+|++..+. +.. .+...+..|...|.. .+++++|..+|+
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 776543 44556666666665 66777777777777654 211 015566666666766 667777777777
Q ss_pred hcccCCccHHHHHHHHHHHhcC-C-----chhHHHHHHHHHHHh
Q 048799 249 GIPSEITNVVVWRTLLGACSFH-G-----NVEMGERVTRKILEM 286 (331)
Q Consensus 249 ~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~ 286 (331)
+......+...+..|...|... | ++++|...|+++.+.
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 7655423445556666665432 2 677777777777654
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.31 E-value=3.5e-11 Score=86.29 Aligned_cols=142 Identities=10% Similarity=0.014 Sum_probs=80.4
Q ss_pred HHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChH
Q 048799 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGK 170 (331)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 170 (331)
..+...|++++|+..++......+. +...+..+..+|.+.|++++|++.|+++....| +..+|..+..+|...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~--~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQ--KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHH--HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 3444556666666666665554222 444455566666666666666666666665554 4566666666666666666
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHH-HHHHHHhcCCCCcHhhHHHHHHHHHhcC
Q 048799 171 EAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKF-FDKMVEECEVLPDIKHYGCLIDMLGRAG 238 (331)
Q Consensus 171 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g 238 (331)
+|+..|++..+.. +-+...+..+...|.+.|++++|.+. ++++.+. .|-++.+|......+...|
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 6666666666532 12345566666666666666554443 4555543 1224555555555555544
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.30 E-value=3.6e-10 Score=91.32 Aligned_cols=225 Identities=11% Similarity=-0.064 Sum_probs=144.3
Q ss_pred HcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHh
Q 048799 29 KWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHG 108 (331)
Q Consensus 29 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 108 (331)
..|++++|.+++++..+.....+ +...+++++|...|.++ ...|...|++++|...+.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~------~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSF------MKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCS------SSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccc------cCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHH
Confidence 35788889988887652111100 11146777777777665 235566788888888777
Q ss_pred hhhhcCC----CcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc-----CC--cHHHHHHHHHHHHccCChHHHHHHHH
Q 048799 109 YGEKRGF----NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE-----RK--NLVSWTSIISGFAMHGMGKEAVENFE 177 (331)
Q Consensus 109 ~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~~~l~~~~~~~~~~~~a~~~~~ 177 (331)
++.+... ......+++.+..+|...|++++|+..|++.... .+ ...+++.+...|.. |++++|+..|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 7665421 1112457777888888888888888888877544 11 13567777778877 88888888888
Q ss_pred HHHhccCCC-----CHHHHHHHHHHHhccCChHHHHHHHHHHHHhc---CCCCc-HhhHHHHHHHHHhcCCHHHHHHHHh
Q 048799 178 RMQKVVLKP-----NRVTFLSVLNACSHGGLVEEGLKFFDKMVEEC---EVLPD-IKHYGCLIDMLGRAGRLEQAEKVAS 248 (331)
Q Consensus 178 ~m~~~~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 248 (331)
+........ ...++..+...+...|++++|...|++..+.. +..+. ...+..++..+...|++++|...|+
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 876532111 13567778888888888888888888877641 11111 2255666667777788999988888
Q ss_pred hcccCCcc------HHHHHHHHHHHhcCCchhHHHH
Q 048799 249 GIPSEITN------VVVWRTLLGACSFHGNVEMGER 278 (331)
Q Consensus 249 ~~~~~~p~------~~~~~~l~~~~~~~g~~~~a~~ 278 (331)
+.. ..|+ ......++.++ ..|+.+.+..
T Consensus 220 ~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 220 ESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 877 5231 12344455544 4566655555
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.30 E-value=7.2e-09 Score=82.75 Aligned_cols=233 Identities=8% Similarity=-0.009 Sum_probs=164.9
Q ss_pred HhcCCh-hHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcC--chhHHHHHHhhhhhcCCCcchhHHHHHHHHHH----H
Q 048799 59 TRMNRS-NGALALFRRMVACEYTEPSEITILAVFPAIWQNG--DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTY----A 131 (331)
Q Consensus 59 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~ 131 (331)
.+.|.+ ++|++++++++..+ +-+...|+.-..++...+ ++++++.+++.++...+. +..+|+.-..++ .
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk--~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK--NYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT--CCHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc--cHHHHHHHHHHHHHHHH
Confidence 344444 67888888875422 234556777777777777 888888888888887655 566666555555 4
Q ss_pred hc---CCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChH--HHHHHHHHHHhccCCCCHHHHHHHHHHHhccCC--
Q 048799 132 KC---GCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGK--EAVENFERMQKVVLKPNRVTFLSVLNACSHGGL-- 203 (331)
Q Consensus 132 ~~---g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-- 203 (331)
.. +++++++.+++++....| +..+|+.-...+.+.|.++ ++++.++++.+... -|...|+.-...+...+.
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGC
T ss_pred hccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccc
Confidence 45 678888888888887755 6778887777777778777 88888888887543 356666666555666665
Q ss_pred ----hHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHH-HHHHHhhcccC----CccHHHHHHHHHHHhcCCchh
Q 048799 204 ----VEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ-AEKVASGIPSE----ITNVVVWRTLLGACSFHGNVE 274 (331)
Q Consensus 204 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~ 274 (331)
++++++.+++++.. .+-|...|+.+...+.+.|+... +..+..++... ..++..+..++.++.+.|+.+
T Consensus 198 ~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred hhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 78888888888875 23477888888777878777443 55566665543 346677888888888889999
Q ss_pred HHHHHHHHHHH-hhcCCCccHHHHH
Q 048799 275 MGERVTRKILE-MERGYGGDYVLMY 298 (331)
Q Consensus 275 ~a~~~~~~~~~-~~~~~~~~~~~l~ 298 (331)
+|.++++.+.+ .+|.....|...+
T Consensus 276 ~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 276 ESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHHHhccChHHHHHHHHHH
Confidence 99999999887 6887655554433
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.28 E-value=1.7e-09 Score=86.30 Aligned_cols=220 Identities=12% Similarity=0.125 Sum_probs=177.0
Q ss_pred hhcCc-hhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcC--CHhHHHHHHHHhhhcCC-cHHHHHHHHHHH----Hcc
Q 048799 95 WQNGD-VRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG--CIFSALKLFEDISVERK-NLVSWTSIISGF----AMH 166 (331)
Q Consensus 95 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~----~~~ 166 (331)
.+.|. .++|+.++++++...+. +..+|+.-..++...| ++++++..++.+....| +..+|+.-...+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~--~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELAS--HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcH--HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhc
Confidence 34444 46899999999999665 7888998889999999 99999999999988766 566777655555 444
Q ss_pred ---CChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChH--HHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCC--
Q 048799 167 ---GMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVE--EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR-- 239 (331)
Q Consensus 167 ---~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 239 (331)
+++++++.+++++.+.. +-+...|+.-.-.+.+.|.++ ++++.++++.+. . +-|...|+.-...+...|+
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-d-~~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-D-LKNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHSSGGGC
T ss_pred cccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhccccc
Confidence 78999999999998854 347777877777777788888 999999999986 3 3477788777777777776
Q ss_pred ----HHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhH-HHHHHHHHHHhh---cCCCccHHHHHHHHhhhccCcch
Q 048799 240 ----LEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEM-GERVTRKILEME---RGYGGDYVLMYNILAGVWRYGDA 310 (331)
Q Consensus 240 ----~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a 310 (331)
++++++.++.+... +-|...|+.+...+.+.|+... +..+..++.+.+ |.++.+...++.++.+.|+.++|
T Consensus 198 ~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 89999999988877 5578899988888888887544 566777776655 77778888999999999999999
Q ss_pred HHHHHHHhh
Q 048799 311 ERLRRVVDE 319 (331)
Q Consensus 311 ~~~~~~~~~ 319 (331)
.++++.+.+
T Consensus 278 ~~~~~~l~~ 286 (306)
T 3dra_A 278 RTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999875
No 113
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.27 E-value=3.2e-09 Score=85.12 Aligned_cols=211 Identities=9% Similarity=-0.075 Sum_probs=140.0
Q ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 048799 68 LALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDIS 147 (331)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 147 (331)
...+.++ +.+...|+..+...+...+...- +.. +...... .|.....+...+..+...|++++|.+.+.+..
T Consensus 31 ~~~is~~-e~g~~~~~~~~l~~l~~~l~~~~--~~l---~~~~~~~--~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l 102 (293)
T 2qfc_A 31 QSEVSRI-ESGAVYPSMDILQGIAAKLQIPI--IHF---YEVLIYS--DIERKKQFKDQVIMLCKQKRYKEIYNKVWNEL 102 (293)
T ss_dssp HHHHHHH-HTSSSCCCHHHHHHHTTTSCCCT--HHH---HHHHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHH-HCCCCCCCHHHHHHHHHHhCcCH--HHH---hcccccc--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 3445555 44555676666555555443221 111 1111111 11134455567788889999999999998776
Q ss_pred hcCCc-H------HHHHHHHHHHHccCChHHHHHHHHHHHhcc---CCCC--HHHHHHHHHHHhccCChHHHHHHHHHHH
Q 048799 148 VERKN-L------VSWTSIISGFAMHGMGKEAVENFERMQKVV---LKPN--RVTFLSVLNACSHGGLVEEGLKFFDKMV 215 (331)
Q Consensus 148 ~~~~~-~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 215 (331)
...+. . ..+..+...+...|++++|+..+++..... ..+. ..+++.+...|...|++++|...++++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 103 KKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55321 1 234455667778889999999998887532 1122 4578888889999999999999999887
Q ss_pred HhcCCCCc-----HhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-------cHHHHHHHHHHHhcCCchhHH-HHHHHH
Q 048799 216 EECEVLPD-----IKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-------NVVVWRTLLGACSFHGNVEMG-ERVTRK 282 (331)
Q Consensus 216 ~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-------~~~~~~~l~~~~~~~g~~~~a-~~~~~~ 282 (331)
+.....|+ ..++..++..|...|++++|...++++....+ -..+|..+..+|...|++++| ...+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 183 KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 32111122 25778888889999999999999888765411 257788888899999999999 777888
Q ss_pred HHHh
Q 048799 283 ILEM 286 (331)
Q Consensus 283 ~~~~ 286 (331)
+...
T Consensus 263 Al~~ 266 (293)
T 2qfc_A 263 ASFF 266 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8763
No 114
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.27 E-value=2.1e-09 Score=95.20 Aligned_cols=221 Identities=7% Similarity=-0.054 Sum_probs=170.9
Q ss_pred hHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHH-HHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHH
Q 048799 65 NGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQ-LIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLF 143 (331)
Q Consensus 65 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 143 (331)
+++..+|++++.. .+-+...|...+..+...|+.++|. .++++++...+ .+...|..++...-+.|++++|..+|
T Consensus 326 ~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P--~s~~Lwl~~a~~ee~~~~~e~aR~iy 401 (679)
T 4e6h_A 326 ARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP--NSAVLAFSLSEQYELNTKIPEIETTI 401 (679)
T ss_dssp HHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3456778887553 3446778888888888889999997 99999987643 36777888889999999999999999
Q ss_pred HHhhhc-----------CC------------cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhc
Q 048799 144 EDISVE-----------RK------------NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSH 200 (331)
Q Consensus 144 ~~~~~~-----------~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 200 (331)
+++... .| ....|...+....+.|+.+.|..+|.+..+.-..++...|...+..-.+
T Consensus 402 ek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~ 481 (679)
T 4e6h_A 402 LSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH 481 (679)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 988753 13 1236888888888889999999999999875111223334333322223
Q ss_pred -cCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc----cHHHHHHHHHHHhcCCchhH
Q 048799 201 -GGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT----NVVVWRTLLGACSFHGNVEM 275 (331)
Q Consensus 201 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~ 275 (331)
.++.+.|.++|+...+. ++-+...+...++.....|+.+.|..+|+++....| ....|...+..-.+.|+.+.
T Consensus 482 ~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 482 ISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp TTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred hCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 35589999999999986 334666777888888889999999999999988844 35788888888889999999
Q ss_pred HHHHHHHHHHhhcCCC
Q 048799 276 GERVTRKILEMERGYG 291 (331)
Q Consensus 276 a~~~~~~~~~~~~~~~ 291 (331)
+.++.+++.+..|+++
T Consensus 560 ~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 560 VRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHhCCCCc
Confidence 9999999999999873
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.26 E-value=7.5e-11 Score=103.78 Aligned_cols=163 Identities=10% Similarity=-0.010 Sum_probs=127.0
Q ss_pred cCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 048799 133 CGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFF 211 (331)
Q Consensus 133 ~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 211 (331)
.|++++|...|+++....| +...|..+...+...|++++|++.|++..+.. +.+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999999987766 57889999999999999999999999998753 235778889999999999999999999
Q ss_pred HHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCC-ccHHHHHHHHHHHhcC---CchhHHHHHHHHHHHhh
Q 048799 212 DKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEI-TNVVVWRTLLGACSFH---GNVEMGERVTRKILEME 287 (331)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 287 (331)
++..+. .+.+...+..+..+|.+.|++++|.+.++++.... .+...+..+..++... |++++|.+.++++.+.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999875 23467889999999999999999999999988773 4578889999999999 99999999999999999
Q ss_pred cCCCccHHHHH
Q 048799 288 RGYGGDYVLMY 298 (331)
Q Consensus 288 ~~~~~~~~~l~ 298 (331)
|.+...+..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888777665
No 116
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.24 E-value=5.9e-11 Score=84.80 Aligned_cols=95 Identities=11% Similarity=-0.073 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhh
Q 048799 225 KHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303 (331)
Q Consensus 225 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (331)
..+..+...+.+.|++++|...|+++... +.++..|..+..++...|++++|+..|+++.+++|+++..+..++.+|..
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 34445555555555555555555555544 22345555555555555555555555555555555555555555555555
Q ss_pred hccCcchHHHHHHHhh
Q 048799 304 VWRYGDAERLRRVVDE 319 (331)
Q Consensus 304 ~g~~~~a~~~~~~~~~ 319 (331)
.|++++|...|++..+
T Consensus 117 lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQ 132 (151)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555544
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.24 E-value=3.2e-09 Score=85.15 Aligned_cols=210 Identities=8% Similarity=-0.081 Sum_probs=134.0
Q ss_pred HHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 048799 69 ALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 148 (331)
..+.++ +.+...|+..+...+...+...-+ .++..-... .......+...+..+...|++++|...+++...
T Consensus 32 ~~~s~~-e~g~~~~~~~~l~~i~~~l~~~~~-----~~~~~~~~~--~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~ 103 (293)
T 3u3w_A 32 SEVSRI-ESGAVYPSMDILQGIAAKLQIPII-----HFYEVLIYS--DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK 103 (293)
T ss_dssp HHHHHH-HTTSCCCCHHHHHHHHHHHTCCTH-----HHHHTTTSS--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHH-HCCCCCCCHHHHHHHHHHhCcCHH-----HHhCCCCCC--cchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 345555 555556777777777666543221 112111110 010122333446778888999999999988876
Q ss_pred cCC---cH----HHHHHHHHHHHccCChHHHHHHHHHHHhccCC-CC----HHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 048799 149 ERK---NL----VSWTSIISGFAMHGMGKEAVENFERMQKVVLK-PN----RVTFLSVLNACSHGGLVEEGLKFFDKMVE 216 (331)
Q Consensus 149 ~~~---~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 216 (331)
..+ +. ..+..+...+...+++++|+..|++....... ++ ..+++.+...|...|++++|..+|+++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 532 21 12334666677778889999988888763211 22 23578888888888899998888888874
Q ss_pred hc----CCCC-cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC------Cc-cHHHHHHHHHHHhcCCc-hhHHHHHHHHH
Q 048799 217 EC----EVLP-DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE------IT-NVVVWRTLLGACSFHGN-VEMGERVTRKI 283 (331)
Q Consensus 217 ~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p-~~~~~~~l~~~~~~~g~-~~~a~~~~~~~ 283 (331)
.. +..+ ...++..+...|.+.|++++|...++++... .+ -..+|..+..++...|+ +++|.+.++++
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 21 1111 2346777788888888888888888776654 11 15677778888888884 58888888888
Q ss_pred HHh
Q 048799 284 LEM 286 (331)
Q Consensus 284 ~~~ 286 (331)
.++
T Consensus 264 l~i 266 (293)
T 3u3w_A 264 SFF 266 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.23 E-value=1e-09 Score=83.50 Aligned_cols=133 Identities=11% Similarity=-0.088 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhc
Q 048799 18 VTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQN 97 (331)
Q Consensus 18 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (331)
..+..+...+...|++++|...|++...++...|..+...+...|++++|+..|++.+... +.+...+..+..++...
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHc
Confidence 3455566677777777777777777776677777777777777777777777777764322 34455666677777777
Q ss_pred CchhHHHHHHhhhhhcCCC--------------cchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc
Q 048799 98 GDVRNCQLIHGYGEKRGFN--------------AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152 (331)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 152 (331)
|++++|...++++.+..+. |....++..+..++...|++++|...|+++....|+
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 7777777777777664332 112355556666666666666666666666555443
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.21 E-value=2.1e-10 Score=79.51 Aligned_cols=110 Identities=8% Similarity=-0.040 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHH
Q 048799 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGAC 267 (331)
Q Consensus 189 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~ 267 (331)
..+......|.+.|++++|++.|++.++. .+.+...|..+..+|.+.|++++|...++++... +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 45666777778888888888888887764 2336777778888888888888888888887766 44577888888888
Q ss_pred hcCCchhHHHHHHHHHHHhhcCCCccHHHHHHH
Q 048799 268 SFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300 (331)
Q Consensus 268 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 300 (331)
...|++++|.+.|+++++++|++...+..+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 888899999999999888888887766666543
No 120
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.18 E-value=3.3e-08 Score=84.97 Aligned_cols=170 Identities=10% Similarity=-0.124 Sum_probs=88.7
Q ss_pred HHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 048799 138 SALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVE 216 (331)
Q Consensus 138 ~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 216 (331)
.+..+|+++....| ....|...+..+.+.|+.+.|..+|++.... +.+...+.. |....+.++. ++.+.+
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~ 267 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHH
Confidence 45667777766544 5667877788788888899999999888876 233222221 1111111111 222221
Q ss_pred hc---C-----CCC---cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcC-CchhHHHHHHHHH
Q 048799 217 EC---E-----VLP---DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFH-GNVEMGERVTRKI 283 (331)
Q Consensus 217 ~~---~-----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~ 283 (331)
.. . ..+ ...+|...+..+.+.|.++.|..+|.++ .. ..+...|...+..-... ++++.|..+|+.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 10 0 000 1234455555555566677777777776 32 12333343222222222 2567777777777
Q ss_pred HHhhcCCCccHHHHHHHHhhhccCcchHHHHHHH
Q 048799 284 LEMERGYGGDYVLMYNILAGVWRYGDAERLRRVV 317 (331)
Q Consensus 284 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 317 (331)
.+..|+.+..+..++....+.|+.+.|..+++.+
T Consensus 347 l~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 347 LLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7655655444444555555555555555555543
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.17 E-value=1.4e-09 Score=82.72 Aligned_cols=127 Identities=13% Similarity=-0.050 Sum_probs=104.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHH
Q 048799 50 SWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDT 129 (331)
Q Consensus 50 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (331)
.+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|...++++++..+. +..++..++.+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~lg~~ 80 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH--LAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--chHHHHHHHHH
Confidence 4556777888899999999999887 3567888888999999999999999999998887543 67788889999
Q ss_pred HHhcCCHhHHHHHHHHhhhcCC-c----------------HHHHHHHHHHHHccCChHHHHHHHHHHHhcc
Q 048799 130 YAKCGCIFSALKLFEDISVERK-N----------------LVSWTSIISGFAMHGMGKEAVENFERMQKVV 183 (331)
Q Consensus 130 ~~~~g~~~~A~~~~~~~~~~~~-~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 183 (331)
+...|++++|...|+++....| + ...+..+..++...|++++|...|++..+..
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999998877533 2 2677888888888899999999888887743
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.17 E-value=3.6e-09 Score=84.83 Aligned_cols=164 Identities=13% Similarity=-0.007 Sum_probs=126.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcc-CCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCc----Hhh
Q 048799 156 WTSIISGFAMHGMGKEAVENFERMQKVV-LKPNR----VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD----IKH 226 (331)
Q Consensus 156 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 226 (331)
+...+..+...|++++|..++++..... ..|+. ..+..+...+...|++++|...++++.+...-.++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3445677889999999999999987743 22232 13345677777888999999999999874111223 336
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcccC-------Cc-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCC------Cc
Q 048799 227 YGCLIDMLGRAGRLEQAEKVASGIPSE-------IT-NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY------GG 292 (331)
Q Consensus 227 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~ 292 (331)
++.+...|...|++++|...|+++... .+ ...++..+...|...|++++|...++++++..+.. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 899999999999999999999998742 12 23578889999999999999999999999865433 35
Q ss_pred cHHHHHHHHhhhcc-CcchHHHHHHHhh
Q 048799 293 DYVLMYNILAGVWR-YGDAERLRRVVDE 319 (331)
Q Consensus 293 ~~~~l~~~~~~~g~-~~~a~~~~~~~~~ 319 (331)
.|..++.++.+.|+ +++|.+.+++..+
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 67889999999996 5999998887754
No 123
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.16 E-value=3.7e-10 Score=88.19 Aligned_cols=195 Identities=7% Similarity=-0.178 Sum_probs=116.3
Q ss_pred hcCchhHHHHHHhhhhhcCCCcchhHHHHHH-------HHHHHhcCCHhHHHHHHHHhhhcCCc----------------
Q 048799 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL-------IDTYAKCGCIFSALKLFEDISVERKN---------------- 152 (331)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~---------------- 152 (331)
..++...|.+.|.++....+. ....|..+ ...+...++..+++..+.+.....|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~--~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES--ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChh--hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 456666677777776666444 45566555 45555555556665555555443221
Q ss_pred ------HHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCc--H
Q 048799 153 ------LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD--I 224 (331)
Q Consensus 153 ------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 224 (331)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+. . .|. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~ 171 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAG 171 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHH
Confidence 1123345556667777777777777665533 44334444555666777777777777644321 1 111 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhcccCC--c--cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHH
Q 048799 225 KHYGCLIDMLGRAGRLEQAEKVASGIPSEI--T--NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297 (331)
Q Consensus 225 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 297 (331)
..+..+..++.+.|++++|+..|++..... | ..........++.+.|+.++|..+|+++...+|+ ......|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 356666777777777777777777775441 3 2345556666777777777777777777777776 4444433
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.15 E-value=1.1e-10 Score=92.99 Aligned_cols=192 Identities=9% Similarity=-0.032 Sum_probs=104.0
Q ss_pred chHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHH
Q 048799 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIIS 161 (331)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~ 161 (331)
+...+..+...+...|++++|...|+++++..+. +...+..+..+|.+.|++++|...++++....| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4456666777777777777777777777776443 566677777777777777777777777766655 4566777777
Q ss_pred HHHccCChHHHHHHHHHHHhccCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCH
Q 048799 162 GFAMHGMGKEAVENFERMQKVVLKPNR-VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240 (331)
Q Consensus 162 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (331)
++...|++++|+..|++..+.. |+. ..+...+....+ ...+.. +...... ..+.+......+... ..|+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~-~~~~~~~i~~~l~~l--~~~~~ 151 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEER-RIHQESELHSYLTRL--IAAER 151 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHT-CCCCCCHHHHHHHHH--HHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHH-HHhhhHHHHHHHHHH--HHHHH
Confidence 7777777777777777766532 211 011111111111 111111 1112222 333344443333222 25666
Q ss_pred HHHHHHHhhcccCCcc-HHHHHHHHHHHhcC-CchhHHHHHHHHHHH
Q 048799 241 EQAEKVASGIPSEITN-VVVWRTLLGACSFH-GNVEMGERVTRKILE 285 (331)
Q Consensus 241 ~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 285 (331)
++|.+.++.+.+..|+ ......+...+.+. +.+++|.++|.++.+
T Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 6666666666655333 22333333333333 445566666665544
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.15 E-value=5.4e-09 Score=83.81 Aligned_cols=166 Identities=12% Similarity=-0.040 Sum_probs=77.8
Q ss_pred HHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcch----hHHHHHHHHHHHhcCCHhHHHHHHHHhhhc-----CCc--HH
Q 048799 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFH----IHVSNCLIDTYAKCGCIFSALKLFEDISVE-----RKN--LV 154 (331)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~--~~ 154 (331)
.+...+..+...|++++|.+.+.+..+......+ ...+..+...+...|++++|+..++++... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3334444445555555555555544443222101 112233444555555555555555555432 111 23
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhc-cCCCC-----HHHHHHHHHHHhccCChHHHHHHHHHHHHhc---CCCC-cH
Q 048799 155 SWTSIISGFAMHGMGKEAVENFERMQKV-VLKPN-----RVTFLSVLNACSHGGLVEEGLKFFDKMVEEC---EVLP-DI 224 (331)
Q Consensus 155 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~ 224 (331)
+|+.+...|...|++++|+..|++..+. ...|+ ..++..+...|...|++++|...+++..+.. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4555555555566666666665555421 00111 1345555555666666666666665554320 0001 13
Q ss_pred hhHHHHHHHHHhcCCHHHH-HHHHhhcc
Q 048799 225 KHYGCLIDMLGRAGRLEQA-EKVASGIP 251 (331)
Q Consensus 225 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 251 (331)
.++..+...|.+.|++++| ...++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4555555566666666666 44455443
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.14 E-value=9.3e-10 Score=80.00 Aligned_cols=126 Identities=10% Similarity=-0.027 Sum_probs=66.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhc
Q 048799 191 FLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSF 269 (331)
Q Consensus 191 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~ 269 (331)
+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|...++++... +.+...+..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 344444455555555555555555443 1223445555555555555555555555555444 2234555555556666
Q ss_pred CCchhHHHHHHHHHHHhhcCCCccHHHHHHH--HhhhccCcchHHHHHHHh
Q 048799 270 HGNVEMGERVTRKILEMERGYGGDYVLMYNI--LAGVWRYGDAERLRRVVD 318 (331)
Q Consensus 270 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~ 318 (331)
.|++++|...++++.+..|.+...+..+..+ +...|++++|...++...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 6666666666666666555554444333222 555566666666555443
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.13 E-value=1.2e-09 Score=76.12 Aligned_cols=118 Identities=12% Similarity=0.045 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHH
Q 048799 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLG 265 (331)
Q Consensus 187 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~ 265 (331)
+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++... +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 4455666666666677777777777766643 2225566666666777777777777777766655 335667777778
Q ss_pred HHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhcc
Q 048799 266 ACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWR 306 (331)
Q Consensus 266 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 306 (331)
++...|++++|.+.++++.+..|.+...+..++.++...|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888888777777777777766653
No 128
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.12 E-value=2.3e-09 Score=83.79 Aligned_cols=200 Identities=10% Similarity=-0.036 Sum_probs=136.5
Q ss_pred hcCChhHHHHHHHHHHhccCCCCchHHHHHH-------HHHHhhcCchhHHHHHHhhhhh------------cCCC----
Q 048799 60 RMNRSNGALALFRRMVACEYTEPSEITILAV-------FPAIWQNGDVRNCQLIHGYGEK------------RGFN---- 116 (331)
Q Consensus 60 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~------------~~~~---- 116 (331)
..++...|.+.|.++.... +-....|..+ ...+...++..+++..+...++ .|.-
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 4677777777777774422 2334566655 4455555555555555555544 2210
Q ss_pred c---chhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCC--HHHH
Q 048799 117 A---FHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPN--RVTF 191 (331)
Q Consensus 117 ~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~ 191 (331)
. .-..+...+...+...|++++|.++|+.+....|+......+...+.+.+++++|+..|+...... .|. ...+
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~ 174 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAG 174 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHH
Confidence 0 013445567788999999999999999887777754466666678889999999999998554321 111 2356
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhcCCCC--cHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHH
Q 048799 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLP--DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTL 263 (331)
Q Consensus 192 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l 263 (331)
..+..++...|++++|+..|++.... ...| ..........++.+.|+.++|..+|+++....|+...+..|
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL 247 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 77888899999999999999998753 3324 33466677778899999999999999998876664444443
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.12 E-value=1.4e-09 Score=74.71 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHH
Q 048799 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGA 266 (331)
Q Consensus 188 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~ 266 (331)
...+..+...+...|++++|.++++++.+. .+.+...+..+...+...|++++|..+++++... +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 445666666677777777777777777654 2335566677777777777777777777776655 3356677777888
Q ss_pred HhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhc
Q 048799 267 CSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVW 305 (331)
Q Consensus 267 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 305 (331)
+...|++++|...++++.+..|+++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888888888888888888888877777777776665543
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.12 E-value=1.6e-09 Score=75.16 Aligned_cols=118 Identities=10% Similarity=-0.061 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHH
Q 048799 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGA 266 (331)
Q Consensus 188 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~ 266 (331)
...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++... +.+...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345556666667777777777777777654 2335666677777777777777777777776655 3346777777888
Q ss_pred HhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccC
Q 048799 267 CSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRY 307 (331)
Q Consensus 267 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 307 (331)
+...|++++|...++++.+..|+++..+..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888887777777788888777765
No 131
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.11 E-value=3.4e-10 Score=78.39 Aligned_cols=102 Identities=8% Similarity=0.049 Sum_probs=92.3
Q ss_pred CCCc-HhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHH
Q 048799 220 VLPD-IKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297 (331)
Q Consensus 220 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 297 (331)
+.|+ ...+......|.+.|++++|.+.|+++... +.+...|..+..++...|++++|+..++++++++|+++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4453 456778889999999999999999998877 45689999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCcchHHHHHHHhhcc
Q 048799 298 YNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 298 ~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
+.++...|++++|.+.+++..+..
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999988754
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.11 E-value=1.8e-10 Score=82.25 Aligned_cols=117 Identities=11% Similarity=-0.055 Sum_probs=92.1
Q ss_pred HHHHHHHhccCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhccc
Q 048799 174 ENFERMQKVVLKP-NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252 (331)
Q Consensus 174 ~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 252 (331)
..|+++.. ..| +...+..+...+...|++++|...|+++.+. -+.+...+..+..+|...|++++|...|+++..
T Consensus 8 ~~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 8 GTIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp CSHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34555554 334 3456667788888999999999999998875 234777888888899999999999999998877
Q ss_pred C-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccH
Q 048799 253 E-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY 294 (331)
Q Consensus 253 ~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 294 (331)
. +.++..+..+..++...|++++|...|+++++..|+++...
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 6 33568888888999999999999999999999888875543
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.08 E-value=1.2e-08 Score=81.14 Aligned_cols=194 Identities=6% Similarity=-0.085 Sum_probs=119.7
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHH
Q 048799 47 NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126 (331)
Q Consensus 47 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 126 (331)
+...+..+...+...|++++|+..|++.+... +.+...+..+..++...|++++|...++++++..+. +..++..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--SVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT--CHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHHHHHHH
Confidence 44567777888888888888888888874432 236677888888888888888888888888877543 67778888
Q ss_pred HHHHHhcCCHhHHHHHHHHhhhcCCcH-HHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChH
Q 048799 127 IDTYAKCGCIFSALKLFEDISVERKNL-VSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVE 205 (331)
Q Consensus 127 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 205 (331)
+.++...|++++|...|+++....|+. ..+...+....+ ..++.. +........+.+......+. .+ ..|+.+
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~-~l-~~~~~~ 152 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLT-RL-IAAERE 152 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHH-HH-HHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHH-HH-HHHHHH
Confidence 888888888888888888876654421 111111111111 111111 11122222333333333332 22 257778
Q ss_pred HHHHHHHHHHHhcCCCCc-HhhHHHHHHHHHhc-CCHHHHHHHHhhcccC
Q 048799 206 EGLKFFDKMVEECEVLPD-IKHYGCLIDMLGRA-GRLEQAEKVASGIPSE 253 (331)
Q Consensus 206 ~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 253 (331)
+|.+.++...+ ..|+ ......+...+.+. +.+++|.++|..+.+.
T Consensus 153 ~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHE---GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGT---TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhc---cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88877777664 2443 33444444444444 6677888888877764
No 134
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.08 E-value=4.4e-09 Score=79.17 Aligned_cols=97 Identities=8% Similarity=-0.063 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHhhhc---CC-c----HHHHHHHHHHHHccCChHHHHHHHHHHHhcc---CCCC-
Q 048799 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVE---RK-N----LVSWTSIISGFAMHGMGKEAVENFERMQKVV---LKPN- 187 (331)
Q Consensus 120 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~- 187 (331)
..++..+...+...|++++|...+++.... .+ + ...+..+...+...|++++|...+++..... ..+.
T Consensus 66 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 145 (203)
T 3gw4_A 66 HRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA 145 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHH
Confidence 344444555555555555555555444332 11 1 2234444445555555555555555443211 0011
Q ss_pred -HHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 048799 188 -RVTFLSVLNACSHGGLVEEGLKFFDKMVE 216 (331)
Q Consensus 188 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 216 (331)
..++..+...+...|++++|.+.+++..+
T Consensus 146 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 146 IACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 12234445555555555555555555444
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.07 E-value=2.9e-09 Score=75.95 Aligned_cols=98 Identities=8% Similarity=0.011 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 197 (331)
+...+..+...+.+.|++++|...|+++....| +...|..+..+|...|++++|+..|++..... +.+...+..+..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 444555555555555555555555555555444 34555555555555555555555555555432 1123444555555
Q ss_pred HhccCChHHHHHHHHHHHHh
Q 048799 198 CSHGGLVEEGLKFFDKMVEE 217 (331)
Q Consensus 198 ~~~~~~~~~a~~~~~~~~~~ 217 (331)
|...|++++|...|+++.+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 55555555555555555543
No 136
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.06 E-value=2.7e-07 Score=74.52 Aligned_cols=230 Identities=11% Similarity=0.075 Sum_probs=152.8
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcC-chhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhc-C-
Q 048799 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNG-DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC-G- 134 (331)
Q Consensus 58 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g- 134 (331)
..+.+..++|++++++++..+ +-+..+|+.--.++...| ++++++.+++.++...+. +..+|+.-..++... +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK--ny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK--SYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHCCS
T ss_pred HHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhcCC
Confidence 344455567888888885432 234556676666666667 588888888888877555 777787777777776 6
Q ss_pred CHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChH--------HHHHHHHHHHhccCCCCHHHHHHHHHHHhccCC--
Q 048799 135 CIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGK--------EAVENFERMQKVVLKPNRVTFLSVLNACSHGGL-- 203 (331)
Q Consensus 135 ~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-- 203 (331)
++++++++++++....| +..+|+.-...+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence 78888888888877755 6677776655555555555 8888888887754 2466677777666666665
Q ss_pred -----hHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCH--------------------HHHHHHHhhcccC-----
Q 048799 204 -----VEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL--------------------EQAEKVASGIPSE----- 253 (331)
Q Consensus 204 -----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~----- 253 (331)
++++++.+++++.. .+-|...|+-+-..+.+.|+. .....+...+...
T Consensus 219 ~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred cchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 57788888887764 233667777666666665543 3444444444433
Q ss_pred --CccHHHHHHHHHHHhcCCchhHHHHHHHHHHH-hhcCCCccH
Q 048799 254 --ITNVVVWRTLLGACSFHGNVEMGERVTRKILE-MERGYGGDY 294 (331)
Q Consensus 254 --~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~ 294 (331)
.+++..+..++..|...|+.++|.++++.+.+ .+|.....|
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw 340 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYW 340 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHH
Confidence 25677788888888888888888888888864 566553333
No 137
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.06 E-value=1.9e-09 Score=88.12 Aligned_cols=94 Identities=10% Similarity=-0.086 Sum_probs=63.8
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHh
Q 048799 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 302 (331)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (331)
...+..+..+|.+.|++++|...++++... +.+...|..+..+|...|++++|...|+++++++|++...+..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 356666666677777777777777766655 3356667777777777777777777777777777777677777777777
Q ss_pred hhccCcch-HHHHHHH
Q 048799 303 GVWRYGDA-ERLRRVV 317 (331)
Q Consensus 303 ~~g~~~~a-~~~~~~~ 317 (331)
..|+.++| ...++.|
T Consensus 276 ~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 276 RIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 77777766 3344444
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.05 E-value=1.5e-08 Score=76.27 Aligned_cols=118 Identities=14% Similarity=0.024 Sum_probs=59.6
Q ss_pred hcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc------CC-cHHHHHHHHHHHHccCC
Q 048799 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE------RK-NLVSWTSIISGFAMHGM 168 (331)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~l~~~~~~~~~ 168 (331)
..|++++|.+.++.+... ++....++..+...+...|++++|...+++.... .+ ...++..+...+...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHTS--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 345555555533333221 1114555666666666666666666666665542 11 23445556666666666
Q ss_pred hHHHHHHHHHHHhcc--C--CC--CHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 048799 169 GKEAVENFERMQKVV--L--KP--NRVTFLSVLNACSHGGLVEEGLKFFDKMV 215 (331)
Q Consensus 169 ~~~a~~~~~~m~~~~--~--~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 215 (331)
+++|+..+++....- . .| ....+..+...+...|++++|...+++..
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666666666554420 1 11 12334445555555566666665555554
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.04 E-value=7.8e-10 Score=81.56 Aligned_cols=127 Identities=9% Similarity=0.062 Sum_probs=102.1
Q ss_pred HHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHH-HHhcCCH-
Q 048799 163 FAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDM-LGRAGRL- 240 (331)
Q Consensus 163 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 240 (331)
+...|++++|+..+++..... +.+...+..+...|...|++++|...|+++.+. . +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~-p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL-R-GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-H-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-C-CCCHHHHHHHHHHHHHhcCCcc
Confidence 456788999999999887753 346778888999999999999999999999875 2 3467788888888 7788998
Q ss_pred -HHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCc
Q 048799 241 -EQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG 292 (331)
Q Consensus 241 -~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 292 (331)
++|...++++....| +...+..+..++...|++++|...++++.+..|+++.
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 999999999887734 5788888999999999999999999999999888744
No 140
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.03 E-value=6.4e-09 Score=74.17 Aligned_cols=98 Identities=10% Similarity=-0.033 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 197 (331)
+...+..+...+...|++++|...|+++....| +...|..+..++...|++++|+..|++..... +.+...+..+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 555666667777777777777777777665544 55666667777777777777777777766543 2244556666667
Q ss_pred HhccCChHHHHHHHHHHHHh
Q 048799 198 CSHGGLVEEGLKFFDKMVEE 217 (331)
Q Consensus 198 ~~~~~~~~~a~~~~~~~~~~ 217 (331)
+...|++++|...|++..+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777776654
No 141
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.02 E-value=9.1e-08 Score=82.19 Aligned_cols=300 Identities=11% Similarity=-0.055 Sum_probs=185.0
Q ss_pred ccchhHHhhhcC--CchHHHHHHHHHHHHHcCC-HHHHHHHHhhCC------CCCchhHHHHHHHHH----hcCChhHHH
Q 048799 2 LKDGSKLFDELP--ERNLVTWNVMITGLVKWGE-LEYARSLFEEMP------CRNVVSWTGIIDGYT----RMNRSNGAL 68 (331)
Q Consensus 2 ~~~A~~~~~~~~--~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~------~~~~~~~~~l~~~~~----~~~~~~~a~ 68 (331)
++.+.++|++.. .|+...|...+....+.++ .+....+|+... ..+...|...+..+. .+|+.+.+.
T Consensus 30 ~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR 109 (493)
T 2uy1_A 30 YRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIR 109 (493)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 466788888866 5888999988888777764 344556666533 134456666665443 246778888
Q ss_pred HHHHHHHhccCCCCchHHHHHHH--------------------------------------------HHHhh--cCc---
Q 048799 69 ALFRRMVACEYTEPSEITILAVF--------------------------------------------PAIWQ--NGD--- 99 (331)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~l~--------------------------------------------~~~~~--~~~--- 99 (331)
.+|++.+. .+...-...|.... ..|.. .++
T Consensus 110 ~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~ 188 (493)
T 2uy1_A 110 NGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMK 188 (493)
T ss_dssp HHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCcc
Confidence 89888854 21111011111000 00100 011
Q ss_pred ------hhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHH-HHHHHHHHHHccCChHHH
Q 048799 100 ------VRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLV-SWTSIISGFAMHGMGKEA 172 (331)
Q Consensus 100 ------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a 172 (331)
.+.+..+|++++...+. ++.+|...+..+.+.|+.++|..+|+++... |... .|.. |....+.++.
T Consensus 189 ~~~~~~~~Rv~~~ye~al~~~p~--~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~----y~~~~e~~~~ 261 (493)
T 2uy1_A 189 LGGRPHESRMHFIHNYILDSFYY--AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLY----YGLVMDEEAV 261 (493)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHH----HHHHTTCTHH
T ss_pred CcchhhHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHH----HHhhcchhHH
Confidence 23356677777776433 6778888888899999999999999999988 7543 3332 2211111121
Q ss_pred HHHHHHHHhc---------cCCC---CHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcC-C
Q 048799 173 VENFERMQKV---------VLKP---NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG-R 239 (331)
Q Consensus 173 ~~~~~~m~~~---------~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~ 239 (331)
++.+.+. +..+ ....|...+....+.++.+.|..+|+++ +. . ..+..+|...+..-...| +
T Consensus 262 ---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d 335 (493)
T 2uy1_A 262 ---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGS 335 (493)
T ss_dssp ---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCC
Confidence 2222211 0011 1244666666666778899999999998 43 1 234445544333333333 6
Q ss_pred HHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHh
Q 048799 240 LEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVD 318 (331)
Q Consensus 240 ~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (331)
.+.|..+|+.+....| ++..|...+......|+.+.|..+|+.+ +.....+...+..-...|+.+.+..++++..
T Consensus 336 ~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 336 RATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998877634 3556666777777889999999999987 2344567777777778899888888887776
Q ss_pred h
Q 048799 319 E 319 (331)
Q Consensus 319 ~ 319 (331)
+
T Consensus 412 ~ 412 (493)
T 2uy1_A 412 D 412 (493)
T ss_dssp H
T ss_pred H
Confidence 4
No 142
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.02 E-value=1.6e-09 Score=88.56 Aligned_cols=143 Identities=12% Similarity=-0.064 Sum_probs=89.6
Q ss_pred hcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcH----------------HHHHHH
Q 048799 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNL----------------VSWTSI 159 (331)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------------~~~~~l 159 (331)
..+++++|...++...+.. |.+...+..+...+.+.|++++|...|+++....|+. .+|..+
T Consensus 125 ~L~~~~~A~~~~~~a~~~~--p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEK--LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEEECCCCGGGCCHHHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence 3455666766666665543 2256777788888888888888888888887665542 556666
Q ss_pred HHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCC
Q 048799 160 ISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239 (331)
Q Consensus 160 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 239 (331)
..+|.+.|++++|+..|++.++.. +.+...+..+..+|...|++++|...|+++.+. .+.+...+..+..++.+.|+
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHH
Confidence 666666666666666666665532 224555556666666666666666666666553 12244555555555666666
Q ss_pred HHHH
Q 048799 240 LEQA 243 (331)
Q Consensus 240 ~~~A 243 (331)
.++|
T Consensus 280 ~~~a 283 (336)
T 1p5q_A 280 QLAR 283 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 143
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.00 E-value=7.9e-07 Score=75.23 Aligned_cols=194 Identities=8% Similarity=-0.057 Sum_probs=143.8
Q ss_pred HHHHHHcCCHHHHHHHHhhCCC--C---Cc---------------hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCc
Q 048799 24 ITGLVKWGELEYARSLFEEMPC--R---NV---------------VSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPS 83 (331)
Q Consensus 24 ~~~~~~~g~~~~A~~~~~~~~~--~---~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 83 (331)
...+.+.|++++|++.|..+.+ + +. .++..|+..|...|++++|.+.+..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567889999999999988652 1 10 24778899999999999999999988543333233
Q ss_pred hH----HHHHHHHHHhhcCchhHHHHHHhhhhh----cCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc------
Q 048799 84 EI----TILAVFPAIWQNGDVRNCQLIHGYGEK----RGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE------ 149 (331)
Q Consensus 84 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 149 (331)
.. ..+.+...+...|+.+.+..++..... .+..+....++..++..|...|++++|..+++++...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 22 233344455678899999999887764 2333324668889999999999999999999987543
Q ss_pred CC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhcc--CC-C-C--HHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 048799 150 RK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVV--LK-P-N--RVTFLSVLNACSHGGLVEEGLKFFDKMVEE 217 (331)
Q Consensus 150 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~-p-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 217 (331)
.+ ...++..++..|...|++++|..++++..... .. | . ...+..+...+...|++++|...|.+..+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 12 34678889999999999999999998876531 21 2 1 245667777888999999999988887653
No 144
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.00 E-value=2.7e-08 Score=72.09 Aligned_cols=91 Identities=12% Similarity=0.078 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccC
Q 048799 124 NCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202 (331)
Q Consensus 124 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 202 (331)
..++..+...|++++|...|++.....| +..++..+...+...|++++|+..+++..... +.+...+..+..++...|
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~ 95 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 95 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 3344444444444444444444433322 23334444444444444444444444433321 112333333333444444
Q ss_pred ChHHHHHHHHHHH
Q 048799 203 LVEEGLKFFDKMV 215 (331)
Q Consensus 203 ~~~~a~~~~~~~~ 215 (331)
++++|...++++.
T Consensus 96 ~~~~A~~~~~~a~ 108 (166)
T 1a17_A 96 KFRAALRDYETVV 108 (166)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 4444444444433
No 145
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.98 E-value=1.3e-08 Score=73.92 Aligned_cols=110 Identities=14% Similarity=0.005 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHH
Q 048799 187 NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLG 265 (331)
Q Consensus 187 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~ 265 (331)
+...+..+...+...|++++|...|++..+. .+.+...+..+..+|.+.|++++|...|+++... +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3456667777778888888888888888764 2336777888888888888888888888888776 335788888889
Q ss_pred HHhcCCchhHHHHHHHHHHHhhcCCCccHHHHH
Q 048799 266 ACSFHGNVEMGERVTRKILEMERGYGGDYVLMY 298 (331)
Q Consensus 266 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 298 (331)
++...|++++|...|++++++.|++...+....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999998877554433
No 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.98 E-value=3.2e-09 Score=75.19 Aligned_cols=107 Identities=13% Similarity=-0.055 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHH
Q 048799 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGA 266 (331)
Q Consensus 188 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~ 266 (331)
...+..+...+...|++++|...|+++.+. -+.+...|..+..+|.+.|++++|...|+++... +.++..+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 345666777888999999999999998875 2347778888889999999999999999998877 3456788888999
Q ss_pred HhcCCchhHHHHHHHHHHHhhcCCCccHHH
Q 048799 267 CSFHGNVEMGERVTRKILEMERGYGGDYVL 296 (331)
Q Consensus 267 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 296 (331)
+...|++++|.+.|+++++..|+++.....
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 999999999999999999988887555443
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.98 E-value=1.1e-08 Score=75.36 Aligned_cols=120 Identities=5% Similarity=-0.023 Sum_probs=66.3
Q ss_pred hhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHH-HHccCCh--H
Q 048799 95 WQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISG-FAMHGMG--K 170 (331)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~-~~~~~~~--~ 170 (331)
...|++++|...+++.++..+. +..++..++.+|...|++++|...|+++....| +...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQ--NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3455666666666666555432 455566666666666666666666666655433 44555555555 5556665 6
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 048799 171 EAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE 217 (331)
Q Consensus 171 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 217 (331)
+|+..|+++.... +.+...+..+...+...|++++|...++++.+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 6666666665532 123445555556666666666666666666543
No 148
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.98 E-value=2.7e-07 Score=74.23 Aligned_cols=244 Identities=7% Similarity=-0.088 Sum_probs=136.3
Q ss_pred hhHHHHHHH---HHhcCChh-HHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCc----------hhHHHHHHhhhhhcC
Q 048799 49 VSWTGIIDG---YTRMNRSN-GALALFRRMVACEYTEPSEITILAVFPAIWQNGD----------VRNCQLIHGYGEKRG 114 (331)
Q Consensus 49 ~~~~~l~~~---~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~ 114 (331)
..|..+... ..+.|.+. +|++++..++..+ |-+...|+.--.++...+. +++++.+++.++...
T Consensus 27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 27 KLYQSATQAVFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 344444433 34556554 6788888774422 1233445544444433332 567777777777765
Q ss_pred CCcchhHHHHHHHHHHHhcC--CHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCC-hHHHHHHHHHHHhccCCCCHHH
Q 048799 115 FNAFHIHVSNCLIDTYAKCG--CIFSALKLFEDISVERK-NLVSWTSIISGFAMHGM-GKEAVENFERMQKVVLKPNRVT 190 (331)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~ 190 (331)
+. +..+|+.-..++...| .+++++.+++++....| +..+|+.-..++...|. ++++++.+.+++... +-|...
T Consensus 105 PK--ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SA 181 (331)
T 3dss_A 105 PK--SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSS 181 (331)
T ss_dssp TT--CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHH
T ss_pred CC--CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHH
Confidence 44 6677776666666666 37777777777776654 66677766666666666 477777777777654 235555
Q ss_pred HHHHHHHHhcc--------------CChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhc-----------CCHHHHHH
Q 048799 191 FLSVLNACSHG--------------GLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA-----------GRLEQAEK 245 (331)
Q Consensus 191 ~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~ 245 (331)
|+.....+... +.++++++.+...... .|-|...|+-+-..+.+. +.++++.+
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 55544444433 3456666777666653 223555555444444433 34566666
Q ss_pred HHhhcccCCccH-HHHHHHH---HHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHH
Q 048799 246 VASGIPSEITNV-VVWRTLL---GACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299 (331)
Q Consensus 246 ~~~~~~~~~p~~-~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 299 (331)
.++++.+..|+. ..+..++ .+....|..+++...+.++.+++|....-|..+..
T Consensus 260 ~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 260 SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 666666554432 1111111 11123455566666666666666665444444433
No 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.97 E-value=6.8e-09 Score=73.48 Aligned_cols=109 Identities=13% Similarity=0.002 Sum_probs=70.4
Q ss_pred HHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCC
Q 048799 142 LFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEV 220 (331)
Q Consensus 142 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 220 (331)
.|+++....| +...+..+...+.+.|++++|+..|++..... +.+...+..+..++...|++++|...|+++.+. .
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~ 82 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALM--D 82 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--C
Confidence 3444444444 34556666667777777777777777776643 235566666777777777777777777777764 1
Q ss_pred CCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC
Q 048799 221 LPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253 (331)
Q Consensus 221 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 253 (331)
+.+...+..+..+|...|++++|.+.|+.+...
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 235566667777777777777777777776655
No 150
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.96 E-value=1.5e-08 Score=70.12 Aligned_cols=93 Identities=12% Similarity=0.023 Sum_probs=42.4
Q ss_pred HHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc--------HHHHHH
Q 048799 87 ILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN--------LVSWTS 158 (331)
Q Consensus 87 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~ 158 (331)
+..+...+.+.|++++|+..|+++++..+. +..+|..+..+|.+.|++++|+..|++.....|+ ..+|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~--~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS--NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 334444444455555555555554444222 4444445555555555555555555544433211 123344
Q ss_pred HHHHHHccCChHHHHHHHHHHHh
Q 048799 159 IISGFAMHGMGKEAVENFERMQK 181 (331)
Q Consensus 159 l~~~~~~~~~~~~a~~~~~~m~~ 181 (331)
+..++...|++++|++.|++.+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444455555555444443
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.96 E-value=8.7e-09 Score=71.21 Aligned_cols=97 Identities=8% Similarity=-0.073 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHH
Q 048799 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGAC 267 (331)
Q Consensus 189 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~ 267 (331)
..+..+...+...|++++|...|++..+. .+.+...+..+..++.+.|++++|...++++... +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34555566666677777777777776654 2235566666777777777777777777776665 33466677777777
Q ss_pred hcCCchhHHHHHHHHHHHhh
Q 048799 268 SFHGNVEMGERVTRKILEME 287 (331)
Q Consensus 268 ~~~g~~~~a~~~~~~~~~~~ 287 (331)
...|++++|...++++.+.+
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 77777777777777777776
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.96 E-value=7.1e-09 Score=77.90 Aligned_cols=175 Identities=9% Similarity=-0.073 Sum_probs=98.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCC
Q 048799 125 CLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGL 203 (331)
Q Consensus 125 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 203 (331)
..+......|+++++.+.++......+ ....+..+...+...|++++|+..|++..... |+...+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------- 77 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------- 77 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH---------
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh---------
Confidence 344445555666666666654332222 34556666677777777777777777766532 221100000
Q ss_pred hHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHH
Q 048799 204 VEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRK 282 (331)
Q Consensus 204 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 282 (331)
....-.. ......+..+..+|...|++++|...++.+... +.+...+..+..++...|++++|...|++
T Consensus 78 ------~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 78 ------ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp ------HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ------hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 0000000 001356667777788888888888888877766 34567788888888888899999999999
Q ss_pred HHHhhcCCCccHHHHHHHHhhhccCcchH-HHHHHHhhc
Q 048799 283 ILEMERGYGGDYVLMYNILAGVWRYGDAE-RLRRVVDER 320 (331)
Q Consensus 283 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~ 320 (331)
+.+..|++...+..+..++...++..++. ..+..+...
T Consensus 148 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 148 AASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888888888888888888888777776 455555443
No 153
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.96 E-value=8.5e-07 Score=71.31 Aligned_cols=221 Identities=9% Similarity=0.029 Sum_probs=145.8
Q ss_pred hcCchh-HHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCC----------HhHHHHHHHHhhhcCC-cHHHHHHHHHHH
Q 048799 96 QNGDVR-NCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC----------IFSALKLFEDISVERK-NLVSWTSIISGF 163 (331)
Q Consensus 96 ~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 163 (331)
+.|.++ +|+.+++.++...+. +..+|+.-..++...+. +++++.+++.+....| +..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~--~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 445544 788888888887655 56666655555544443 6788888888877655 667777776666
Q ss_pred HccC--ChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCC-hHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhc---
Q 048799 164 AMHG--MGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGL-VEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA--- 237 (331)
Q Consensus 164 ~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 237 (331)
...+ ++++++.+++++.+.. +-|...|+.-.-.+...|. .+++++.++.+++. . +.|...|+.....+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-N-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-C-SCCHHHHHHHHHHHHHHSCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-C-CCCHHHHHHHHHHHHHhhhc
Confidence 6666 4788888888887754 2366666666666666676 47888888888875 2 33666776666555554
Q ss_pred -----------CCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcC-----------CchhHHHHHHHHHHHhhcCCCccH
Q 048799 238 -----------GRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFH-----------GNVEMGERVTRKILEMERGYGGDY 294 (331)
Q Consensus 238 -----------g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~ 294 (331)
+.++++.+.+..+... +-|...|+.+-..+... +.++++++.++++.+..|++.-.+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 4577888888887766 34566676555555444 356788888888888888774444
Q ss_pred HHHHHH---HhhhccCcchHHHHHHHhhcc
Q 048799 295 VLMYNI---LAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 295 ~~l~~~---~~~~g~~~~a~~~~~~~~~~~ 321 (331)
..++.. ....|..+++...+.++.+.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 333322 223456667777777776643
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.96 E-value=2.8e-09 Score=73.71 Aligned_cols=99 Identities=9% Similarity=-0.034 Sum_probs=90.4
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 048799 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301 (331)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (331)
+...+..+...+.+.|++++|...|+++... +.+...|..+..++...|++++|+..++++++.+|+++..+..++.++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3456778888999999999999999998877 446889999999999999999999999999999999999999999999
Q ss_pred hhhccCcchHHHHHHHhhcc
Q 048799 302 AGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 302 ~~~g~~~~a~~~~~~~~~~~ 321 (331)
...|++++|...+++..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999987765
No 155
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.96 E-value=3.2e-09 Score=71.43 Aligned_cols=98 Identities=9% Similarity=-0.077 Sum_probs=58.1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcC--CCccHHHHHHH
Q 048799 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERG--YGGDYVLMYNI 300 (331)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~ 300 (331)
...+..+...+...|++++|...++++... +.+...+..+..++...|++++|...++++.+..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 344445555555666666666666655544 224455555666666666666666666666666666 55556666666
Q ss_pred Hhhh-ccCcchHHHHHHHhhcc
Q 048799 301 LAGV-WRYGDAERLRRVVDERN 321 (331)
Q Consensus 301 ~~~~-g~~~~a~~~~~~~~~~~ 321 (331)
+... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 6666 66666666666665543
No 156
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.95 E-value=6.1e-08 Score=67.27 Aligned_cols=117 Identities=6% Similarity=-0.069 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 197 (331)
+...+..++..+...|++++|...|+++....| +...+..+...+...|++++|+..+++..+.. +.+...+..+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 555566666666666666666666666655544 45556666666666666666666666665532 2244556666666
Q ss_pred HhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcC
Q 048799 198 CSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG 238 (331)
Q Consensus 198 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 238 (331)
+...|++++|...+++..+. . +.+...+..+..++...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~-~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL-D-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-C-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHh-C-CCchHHHHHHHHHHHHhc
Confidence 66666666666666666553 1 123344455555554443
No 157
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.94 E-value=8.3e-08 Score=65.64 Aligned_cols=96 Identities=19% Similarity=0.274 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 048799 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198 (331)
Q Consensus 120 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 198 (331)
...+..++..+...|++++|...|+++....| +..++..+...+...|++++|+..++++.... +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 34445555555555566666655555554433 34455555555555566666666555555432 22344555555555
Q ss_pred hccCChHHHHHHHHHHHH
Q 048799 199 SHGGLVEEGLKFFDKMVE 216 (331)
Q Consensus 199 ~~~~~~~~a~~~~~~~~~ 216 (331)
...|++++|...++++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 556666666666655554
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.93 E-value=1.4e-08 Score=68.82 Aligned_cols=109 Identities=12% Similarity=0.014 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHH
Q 048799 189 VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGAC 267 (331)
Q Consensus 189 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~ 267 (331)
..+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|...++++... +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 33444555555566666666666665543 1224455555555666666666666666655544 22355566666666
Q ss_pred hcCCchhHHHHHHHHHHHhhcCCCccHHHHHH
Q 048799 268 SFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299 (331)
Q Consensus 268 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 299 (331)
...|++++|.+.++++.+..|+++..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66666666666666666666655444444433
No 159
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.93 E-value=3.5e-09 Score=72.65 Aligned_cols=96 Identities=7% Similarity=-0.159 Sum_probs=77.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhh
Q 048799 226 HYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 304 (331)
Q Consensus 226 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 304 (331)
.+..+...+.+.|++++|...|+++....| +...|..+..++...|++++|+..++++++.+|+++..+..++.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 345566777888888888888888877634 6778888888888888888888888888888888888888888888888
Q ss_pred ccCcchHHHHHHHhhcc
Q 048799 305 WRYGDAERLRRVVDERN 321 (331)
Q Consensus 305 g~~~~a~~~~~~~~~~~ 321 (331)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 88888888888876643
No 160
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.93 E-value=1.1e-07 Score=76.79 Aligned_cols=219 Identities=11% Similarity=0.016 Sum_probs=160.8
Q ss_pred hcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcC-CHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHcc-C-ChHH
Q 048799 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG-CIFSALKLFEDISVERK-NLVSWTSIISGFAMH-G-MGKE 171 (331)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~-~-~~~~ 171 (331)
..+..++|++++++++...+. +..+|+.-..++...| .+++++.+++.+....| +..+|+.-...+... + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~--~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPA--HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence 344557899999999998665 7888888888888888 59999999999998866 677888877776665 6 8999
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHhccCChH--------HHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCC----
Q 048799 172 AVENFERMQKVVLKPNRVTFLSVLNACSHGGLVE--------EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR---- 239 (331)
Q Consensus 172 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 239 (331)
++++++++.+.. +-|...|+.-.-.+.+.|.++ ++++.++++.+. . +-|...|+.....+.+.++
T Consensus 144 EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~-d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 144 EIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV-D-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhccccccc
Confidence 999999998753 336667766555555556666 899999999986 3 3477888888877877776
Q ss_pred ---HHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCch--------------------hHHHHHHHHHHHhh------cC
Q 048799 240 ---LEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNV--------------------EMGERVTRKILEME------RG 289 (331)
Q Consensus 240 ---~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~------~~ 289 (331)
++++.+.++++... +-|...|+.+-..+.+.|+. ........++.... +.
T Consensus 221 ~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 68899999888777 44678888777777766654 11222222221111 23
Q ss_pred CCccHHHHHHHHhhhccCcchHHHHHHHhh
Q 048799 290 YGGDYVLMYNILAGVWRYGDAERLRRVVDE 319 (331)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (331)
++.+...++.+|...|+.++|.++++.+.+
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 344566788999999999999999999853
No 161
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.92 E-value=3.4e-08 Score=68.25 Aligned_cols=117 Identities=13% Similarity=0.009 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 048799 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198 (331)
Q Consensus 120 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 198 (331)
...+..++..+...|++++|...|+++....| +...+..+...+...|++++|+..+++..... +.+...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 34444455555555555555555555544333 34444555555555555555555555554432 12344444555555
Q ss_pred hccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCC
Q 048799 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239 (331)
Q Consensus 199 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 239 (331)
...|++++|...+++..+. . +.+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~-~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL-D-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH-S-TTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhc-C-ccchHHHHHHHHHHHHHhc
Confidence 5555555555555555443 1 1234444444445544443
No 162
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.91 E-value=3.4e-09 Score=79.69 Aligned_cols=146 Identities=11% Similarity=-0.054 Sum_probs=69.2
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCc--------------hH
Q 048799 23 MITGLVKWGELEYARSLFEEMPC---RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPS--------------EI 85 (331)
Q Consensus 23 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~~ 85 (331)
.+......|+++++.+.|+.-.. .....+..+...+...|++++|+..|++.+......|+ ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 34444556666666666654332 13345666777777888888888888877543222221 13
Q ss_pred HHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHH
Q 048799 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFA 164 (331)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 164 (331)
.+..+..++...|++++|+..++++++..+. +..++..+..+|...|++++|...|+++....| +...+..+..++.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKN--NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 4444455555555555555555555544322 444444555555555555555555555544433 2334444444444
Q ss_pred ccCChH
Q 048799 165 MHGMGK 170 (331)
Q Consensus 165 ~~~~~~ 170 (331)
..++.+
T Consensus 168 ~~~~~~ 173 (198)
T 2fbn_A 168 KLKEAR 173 (198)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.91 E-value=2.2e-08 Score=70.13 Aligned_cols=102 Identities=10% Similarity=-0.097 Sum_probs=77.0
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHH
Q 048799 186 PNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLL 264 (331)
Q Consensus 186 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~ 264 (331)
.+...+..+...+...|++++|...|++..+. .+.+...+..+..++...|++++|...++++... +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 35666777777777788888888888777764 2335667777777788888888888888877766 33567788888
Q ss_pred HHHhcCCchhHHHHHHHHHHHhhcC
Q 048799 265 GACSFHGNVEMGERVTRKILEMERG 289 (331)
Q Consensus 265 ~~~~~~g~~~~a~~~~~~~~~~~~~ 289 (331)
.++...|++++|...++++.+..|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8888888888888888888887776
No 164
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.91 E-value=1.3e-07 Score=80.16 Aligned_cols=163 Identities=7% Similarity=-0.101 Sum_probs=89.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhcC---CcH----HHHHHHHHHHHccCChHHHHHHHHHHHhc----cCCCC-HHH
Q 048799 123 SNCLIDTYAKCGCIFSALKLFEDISVER---KNL----VSWTSIISGFAMHGMGKEAVENFERMQKV----VLKPN-RVT 190 (331)
Q Consensus 123 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~ 190 (331)
+..++..|...|++++|.+.+..+.... ++. ...+.+...+...|+++.+..++++.... +..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4456666666666666666666554331 111 12233333444556666666666655431 12222 345
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhcCC---CC-cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-----Cc-c--HH
Q 048799 191 FLSVLNACSHGGLVEEGLKFFDKMVEECEV---LP-DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-----IT-N--VV 258 (331)
Q Consensus 191 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p-~--~~ 258 (331)
+..+...+...|++++|..+++++.....- .+ ...++..++..|...|++++|..+++.+... .| . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 556666666777777777766665543111 11 2345666666677777777777766665433 11 1 23
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 259 VWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 259 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
.+..++..+...|++++|...+.++.+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445555566666777777776666665
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.89 E-value=1.2e-08 Score=71.61 Aligned_cols=103 Identities=10% Similarity=-0.080 Sum_probs=93.4
Q ss_pred CCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHH
Q 048799 221 LPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 299 (331)
Q Consensus 221 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 299 (331)
+.+...+..+...+...|++++|...|+.+... +.+...|..+..++...|++++|...++++.+.+|+++..+..++.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 346788899999999999999999999998877 4457899999999999999999999999999999999999999999
Q ss_pred HHhhhccCcchHHHHHHHhhcccc
Q 048799 300 ILAGVWRYGDAERLRRVVDERNAL 323 (331)
Q Consensus 300 ~~~~~g~~~~a~~~~~~~~~~~~~ 323 (331)
++...|++++|...+++..+....
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 999999999999999998876543
No 166
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.89 E-value=7.9e-08 Score=66.45 Aligned_cols=108 Identities=12% Similarity=0.027 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhcc--CCCC----HHHH
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKVV--LKPN----RVTF 191 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~----~~~~ 191 (331)
...++..++..+.+.|++++|+..|+++....| +..+|..+..+|...|++++|++.+++.++.. ..++ ..+|
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 345667788888888999999999988877766 57778888888888888888888888877632 1111 2356
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHH
Q 048799 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC 229 (331)
Q Consensus 192 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 229 (331)
..+..++...|++++|++.|++..+. .|+..+...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~---~~~~~~~~~ 121 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE---FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---SCCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh---CcCHHHHHH
Confidence 66777788888888888888887764 455554433
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=3.9e-08 Score=69.74 Aligned_cols=110 Identities=12% Similarity=-0.081 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCc----HhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHH
Q 048799 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD----IKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRT 262 (331)
Q Consensus 188 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~ 262 (331)
...+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|...++++... +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 344444555555555555555555555432 233 345555555556666666666666555544 224555666
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHH
Q 048799 263 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 300 (331)
Q Consensus 263 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 300 (331)
+..++...|++++|...++++.+..|++...+..+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 66666666666667666666666666654444444433
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.89 E-value=7.9e-09 Score=75.08 Aligned_cols=100 Identities=11% Similarity=-0.027 Sum_probs=91.8
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 048799 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301 (331)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (331)
+...+..+...+.+.|++++|...|+++....| +...|..+..+|...|++++|+..++++++.+|++...+..++.++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 566788889999999999999999999988744 6889999999999999999999999999999999999999999999
Q ss_pred hhhccCcchHHHHHHHhhccc
Q 048799 302 AGVWRYGDAERLRRVVDERNA 322 (331)
Q Consensus 302 ~~~g~~~~a~~~~~~~~~~~~ 322 (331)
...|++++|...+++..+...
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHS
T ss_pred HHccCHHHHHHHHHHHHHhCC
Confidence 999999999999999887653
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.83 E-value=4.7e-08 Score=67.57 Aligned_cols=91 Identities=9% Similarity=0.035 Sum_probs=37.4
Q ss_pred HHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc--------HHHHHHHH
Q 048799 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN--------LVSWTSII 160 (331)
Q Consensus 89 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~l~ 160 (331)
.+...+...|++++|...++++.+..+. +..++..++.++...|++++|...++++....|+ ..++..+.
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKELDPT--NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 3333444444444444444444433221 3333444444444444444444444444333111 33344444
Q ss_pred HHHHccCChHHHHHHHHHHHh
Q 048799 161 SGFAMHGMGKEAVENFERMQK 181 (331)
Q Consensus 161 ~~~~~~~~~~~a~~~~~~m~~ 181 (331)
.++...|++++|.+.|++...
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 444444444444444444443
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.82 E-value=2.3e-08 Score=85.71 Aligned_cols=120 Identities=11% Similarity=-0.022 Sum_probs=95.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCc
Q 048799 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGN 272 (331)
Q Consensus 194 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~ 272 (331)
+...+.+.|++++|.+.++++.+. .+.+...+..+..+|.+.|++++|.+.++++... +.+...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 344566788888888888888875 2335778888888899999999999999888877 3457888889999999999
Q ss_pred hhHHHHHHHHHHHhhcCCCccHHHHHHH--HhhhccCcchHHHHH
Q 048799 273 VEMGERVTRKILEMERGYGGDYVLMYNI--LAGVWRYGDAERLRR 315 (331)
Q Consensus 273 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 315 (331)
+++|.+.++++.+..|++...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999988888888877 888899999999887
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.82 E-value=5.2e-08 Score=67.35 Aligned_cols=111 Identities=10% Similarity=-0.051 Sum_probs=61.2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-c-------HHHHH
Q 048799 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-N-------VVVWR 261 (331)
Q Consensus 190 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~-------~~~~~ 261 (331)
.+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++....| + ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3444455555555555555555555543 122444555555555555666666555555544411 1 45566
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhh
Q 048799 262 TLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303 (331)
Q Consensus 262 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (331)
.+..++...|++++|.+.++++.+..|+ +.....+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence 6666777777777777777777776653 3444444444433
No 172
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.82 E-value=2.3e-08 Score=67.80 Aligned_cols=99 Identities=14% Similarity=0.103 Sum_probs=89.3
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 048799 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301 (331)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (331)
....+..++..+...|++++|...++.+... +.+...+..+..++...|++++|...++++.+..|+++..+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4566778888999999999999999998877 446888999999999999999999999999999999989999999999
Q ss_pred hhhccCcchHHHHHHHhhcc
Q 048799 302 AGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 302 ~~~g~~~~a~~~~~~~~~~~ 321 (331)
...|++++|.+.+++..+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999987754
No 173
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.80 E-value=8.5e-08 Score=64.25 Aligned_cols=25 Identities=4% Similarity=-0.201 Sum_probs=10.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhh
Q 048799 123 SNCLIDTYAKCGCIFSALKLFEDIS 147 (331)
Q Consensus 123 ~~~l~~~~~~~g~~~~A~~~~~~~~ 147 (331)
+..+..++...|++++|...|+++.
T Consensus 43 ~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 43 WLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3333344444444444444444333
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=5.9e-08 Score=68.81 Aligned_cols=100 Identities=12% Similarity=-0.033 Sum_probs=90.8
Q ss_pred CcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCcc----HHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHH
Q 048799 222 PDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN----VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297 (331)
Q Consensus 222 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 297 (331)
.+...+..+...+...|++++|...|+++....|+ ...+..+..++...|++++|...++++.+..|+++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 35677888899999999999999999999888665 68888899999999999999999999999999998899999
Q ss_pred HHHHhhhccCcchHHHHHHHhhcc
Q 048799 298 YNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 298 ~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
+.++...|++++|...+++..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999987754
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.78 E-value=7.1e-08 Score=82.29 Aligned_cols=123 Identities=11% Similarity=-0.030 Sum_probs=81.3
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhcCCCC-------------cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-Cc
Q 048799 190 TFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP-------------DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-IT 255 (331)
Q Consensus 190 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p 255 (331)
.+..+...+.+.|++++|...|+++.+.....+ ....|..+..+|.+.|++++|...++++... +.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 344455555555555555555555554311100 1466777777788888888888888877766 33
Q ss_pred cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHH
Q 048799 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312 (331)
Q Consensus 256 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 312 (331)
+...|..+..+|...|++++|...|+++++++|++...+..+..++...++.+++.+
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788888888888888888888888888887888888888888877776653
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.75 E-value=1.2e-07 Score=68.13 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC---c----HHHHHHHHHHHHccCChHHHHHHHHHHH
Q 048799 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERK---N----LVSWTSIISGFAMHGMGKEAVENFERMQ 180 (331)
Q Consensus 120 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 180 (331)
..++..+...+...|++++|...+++.....+ + ..++..+...+...|++++|...+++..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455556666666666666666665543311 1 1244445555555555555555555544
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.75 E-value=8.1e-09 Score=70.39 Aligned_cols=91 Identities=15% Similarity=0.103 Sum_probs=60.4
Q ss_pred cCChHHHHHHHHHHHHhcC--CCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHHH
Q 048799 201 GGLVEEGLKFFDKMVEECE--VLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMGE 277 (331)
Q Consensus 201 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~ 277 (331)
.|++++|+..|+++.+. + -+.+...+..+..+|...|++++|...|+++....| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46677777777777643 2 122455667777777777777777777777766633 4667777777777788888888
Q ss_pred HHHHHHHHhhcCCCc
Q 048799 278 RVTRKILEMERGYGG 292 (331)
Q Consensus 278 ~~~~~~~~~~~~~~~ 292 (331)
..++++++..|+++.
T Consensus 82 ~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 888888777776644
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.75 E-value=5.5e-08 Score=70.42 Aligned_cols=82 Identities=16% Similarity=0.023 Sum_probs=63.9
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCC-ccHHHHHHH
Q 048799 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG-GDYVLMYNI 300 (331)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~ 300 (331)
+...|..+..+|.+.|++++|...++.+... +.+...|..+..++...|++++|...|+++++++|+++ .....+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4567788888888899999999998888776 44578888899999999999999999999999999876 334444444
Q ss_pred Hhhh
Q 048799 301 LAGV 304 (331)
Q Consensus 301 ~~~~ 304 (331)
....
T Consensus 142 ~~~~ 145 (162)
T 3rkv_A 142 TERR 145 (162)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 179
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.74 E-value=5.1e-08 Score=66.77 Aligned_cols=96 Identities=10% Similarity=-0.060 Sum_probs=54.3
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCC
Q 048799 193 SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHG 271 (331)
Q Consensus 193 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 271 (331)
.+...+.+.|++++|...|+++.+. -+.+...+..+..++...|++++|...|+++....| +...+..+..++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3444555666666666666666553 122455556666666666666666666666655523 4555666666666666
Q ss_pred chhHHHHHHHHHHHhhcCC
Q 048799 272 NVEMGERVTRKILEMERGY 290 (331)
Q Consensus 272 ~~~~a~~~~~~~~~~~~~~ 290 (331)
++++|...++++++.+|++
T Consensus 100 ~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHhCcCC
Confidence 6666666666666655544
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.74 E-value=2.9e-08 Score=81.14 Aligned_cols=150 Identities=9% Similarity=-0.086 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHH
Q 048799 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLID 232 (331)
Q Consensus 153 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (331)
...+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ ....|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l-----------~~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV-----------KNPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH-----------HTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH-----------HHHHHHHHHH
Confidence 445666777777888888888888877663 354331 12222333222111 1125667777
Q ss_pred HHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHH-hhhccCcch
Q 048799 233 MLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL-AGVWRYGDA 310 (331)
Q Consensus 233 ~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a 310 (331)
+|.+.|++++|...++++... +.+...|..+..+|...|++++|...|+++++++|++...+..+..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888777666 335677777778888888888888888888777777777777666663 344566667
Q ss_pred HHHHHHHhhccc
Q 048799 311 ERLRRVVDERNA 322 (331)
Q Consensus 311 ~~~~~~~~~~~~ 322 (331)
...++.|.....
T Consensus 319 ~~~~~~~l~~~p 330 (338)
T 2if4_A 319 KEMYKGIFKGKD 330 (338)
T ss_dssp ------------
T ss_pred HHHHHHhhCCCC
Confidence 777777765443
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.74 E-value=2.1e-07 Score=64.22 Aligned_cols=97 Identities=11% Similarity=0.005 Sum_probs=63.2
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcCCCCcH---hhHHHHHHHHHhcCCHHHHHHHHhhcccCCcc----HHHHHHHHHH
Q 048799 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDI---KHYGCLIDMLGRAGRLEQAEKVASGIPSEITN----VVVWRTLLGA 266 (331)
Q Consensus 194 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~ 266 (331)
+...+...|++++|...|+.+.+. . +.+. ..+..+..++.+.|++++|...|+.+....|+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~-~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL-Y-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-C-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH-C-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 445556667777777777776654 1 1122 35566666677777777777777776655332 4566667777
Q ss_pred HhcCCchhHHHHHHHHHHHhhcCCCc
Q 048799 267 CSFHGNVEMGERVTRKILEMERGYGG 292 (331)
Q Consensus 267 ~~~~g~~~~a~~~~~~~~~~~~~~~~ 292 (331)
+...|++++|...++++.+..|+++.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 77778888888888887777776643
No 182
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.71 E-value=4.7e-08 Score=69.17 Aligned_cols=107 Identities=15% Similarity=-0.001 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCc-------------HhhHHHHHHHHHhcCCHHHHHHHHhhcccC-
Q 048799 188 RVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD-------------IKHYGCLIDMLGRAGRLEQAEKVASGIPSE- 253 (331)
Q Consensus 188 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 253 (331)
...+......+...|++++|...|++.++. .|+ ...|..+..++.+.|++++|+..++++...
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 344566677777888888888888888865 232 126677777777777777777777766655
Q ss_pred ------Ccc-HHHH----HHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHH
Q 048799 254 ------ITN-VVVW----RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 297 (331)
Q Consensus 254 ------~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 297 (331)
.|+ ...| .....++...|++++|+..|++++++.|++......+
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 554 4566 6777777777777777777777777777765554433
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.71 E-value=4.9e-08 Score=83.27 Aligned_cols=143 Identities=13% Similarity=0.012 Sum_probs=92.1
Q ss_pred hcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc----------------HHHHHHH
Q 048799 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN----------------LVSWTSI 159 (331)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------------~~~~~~l 159 (331)
..+++++|...++...+.. |.....+..+...+.+.|++++|...|+++....|+ ..+|..+
T Consensus 246 ~l~~~~~A~~~~~~~~~~~--~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl 323 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEK--LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL 323 (457)
T ss_dssp EEEEEECCCCGGGSCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHH
Confidence 3445566666666655542 225667778888888899999999988888766443 3566666
Q ss_pred HHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCC-cHhhHHHHHHHHHhcC
Q 048799 160 ISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP-DIKHYGCLIDMLGRAG 238 (331)
Q Consensus 160 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 238 (331)
..+|.+.|++++|+..+++.+... +.+...|..+..+|...|++++|...|+++.+. .| +...+..+..++.+.|
T Consensus 324 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 324 AMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV---NPQNKAARLQISMCQKKAK 399 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---C----CHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHH
Confidence 667777777777777777766643 234556666666677777777777777776642 33 4455666666666666
Q ss_pred CHHHHH
Q 048799 239 RLEQAE 244 (331)
Q Consensus 239 ~~~~A~ 244 (331)
+.+++.
T Consensus 400 ~~~~a~ 405 (457)
T 1kt0_A 400 EHNERD 405 (457)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.70 E-value=4.4e-07 Score=65.11 Aligned_cols=131 Identities=15% Similarity=0.107 Sum_probs=74.5
Q ss_pred HHHHHHHHHhhcCchhHHHHHHhhhhhcCCC----cchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC---C----cHH
Q 048799 86 TILAVFPAIWQNGDVRNCQLIHGYGEKRGFN----AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER---K----NLV 154 (331)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~----~~~ 154 (331)
++..+...+...|++++|...+++..+.... .....++..+...+...|++++|...+++..... + ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444445555555555555555554433111 1012356667777777777777777777665431 1 134
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhcc--C--C-CCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 048799 155 SWTSIISGFAMHGMGKEAVENFERMQKVV--L--K-PNRVTFLSVLNACSHGGLVEEGLKFFDKMVE 216 (331)
Q Consensus 155 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~--~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 216 (331)
.+..+...+...|++++|.+.+++..... . . .....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56666667777777777777777665421 0 0 1123455566666677777777777766654
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.70 E-value=1e-07 Score=78.76 Aligned_cols=122 Identities=9% Similarity=-0.044 Sum_probs=93.7
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhc-------------CCCC-cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-Cc
Q 048799 191 FLSVLNACSHGGLVEEGLKFFDKMVEEC-------------EVLP-DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-IT 255 (331)
Q Consensus 191 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p 255 (331)
+..+...+.+.|++++|...|+++.+.. ...| +...|..+..+|.+.|++++|.+.++++... +.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 3444445555555555555555554310 0122 4678888999999999999999999999887 44
Q ss_pred cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHH
Q 048799 256 NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAER 312 (331)
Q Consensus 256 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 312 (331)
+...|..+..+|...|++++|...|+++.++.|++...+..+..++...++.+++.+
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999998888888888888887776654
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.69 E-value=3.4e-06 Score=73.73 Aligned_cols=171 Identities=9% Similarity=-0.021 Sum_probs=127.1
Q ss_pred HhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCC----------hHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccC--
Q 048799 136 IFSALKLFEDISVERK-NLVSWTSIISGFAMHGM----------GKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG-- 202 (331)
Q Consensus 136 ~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-- 202 (331)
.++|++.++++....| +..+|+.--.++...|+ ++++++.++++.... +-+...|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 4566777777776666 45667666555555555 788888888887654 235566666666667777
Q ss_pred ChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcC-CHHHHHHHHhhcccC-CccHHHHHHHHHHHhcC----------
Q 048799 203 LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG-RLEQAEKVASGIPSE-ITNVVVWRTLLGACSFH---------- 270 (331)
Q Consensus 203 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~---------- 270 (331)
+++++.+.++++.+. . +-+...|+.-...+.+.| .++++.+.++++.+. +-+...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~-d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEA-D-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhh-c-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 568888888888875 2 336777777777777778 788888888888877 44677777776665542
Q ss_pred ----CchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcc
Q 048799 271 ----GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGD 309 (331)
Q Consensus 271 ----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 309 (331)
+.++++.+.+++++..+|++..+|..+..++.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999888665
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.69 E-value=1.2e-07 Score=77.52 Aligned_cols=154 Identities=10% Similarity=-0.006 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 198 (331)
....+..+...+.+.|++++|...|+++....|+... +...++.+++...+. ...|..+..+|
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 4566778888999999999999999998877665432 223344444443321 13677888899
Q ss_pred hccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHH-HhcCCchhHH
Q 048799 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGA-CSFHGNVEMG 276 (331)
Q Consensus 199 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~~~a 276 (331)
.+.|++++|...++++++. .+.+...+..+..+|...|++++|...|+++....| +...+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999875 234778899999999999999999999999988744 44555555555 3455677888
Q ss_pred HHHHHHHHHhhcCCC
Q 048799 277 ERVTRKILEMERGYG 291 (331)
Q Consensus 277 ~~~~~~~~~~~~~~~ 291 (331)
...|+++.+..|.++
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 899999998877654
No 188
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.68 E-value=5e-08 Score=67.49 Aligned_cols=95 Identities=13% Similarity=0.006 Sum_probs=82.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcccCCcc-H---HHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCC---CccHHHHHH
Q 048799 227 YGCLIDMLGRAGRLEQAEKVASGIPSEITN-V---VVWRTLLGACSFHGNVEMGERVTRKILEMERGY---GGDYVLMYN 299 (331)
Q Consensus 227 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~ 299 (331)
+..+...+...|++++|...|+.+....|+ . ..+..+..++...|++++|...++++.+..|++ +..+..++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 345667788999999999999998876343 3 578888999999999999999999999999998 566889999
Q ss_pred HHhhhccCcchHHHHHHHhhcc
Q 048799 300 ILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 300 ~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
++...|++++|...++.+.+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999988754
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.65 E-value=2e-08 Score=68.37 Aligned_cols=86 Identities=14% Similarity=-0.031 Sum_probs=73.8
Q ss_pred hcCCHHHHHHHHhhcccC---Cc-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchH
Q 048799 236 RAGRLEQAEKVASGIPSE---IT-NVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAE 311 (331)
Q Consensus 236 ~~g~~~~A~~~~~~~~~~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 311 (331)
..|++++|...|+++... .| +...+..+..++...|++++|+..++++++..|+++..+..++.++...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468899999999998877 24 45788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcc
Q 048799 312 RLRRVVDERN 321 (331)
Q Consensus 312 ~~~~~~~~~~ 321 (331)
..+++..+..
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999887754
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.65 E-value=3.3e-07 Score=64.83 Aligned_cols=97 Identities=14% Similarity=-0.054 Sum_probs=66.7
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHhhcccCCcc-------------HHHHHHHHHHHhcCCchhHHHHHHHHHHHh----
Q 048799 224 IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITN-------------VVVWRTLLGACSFHGNVEMGERVTRKILEM---- 286 (331)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 286 (331)
...+......+.+.|++++|...|+++....|+ ...|..+..++.+.|++++|+..+++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 344555666667777777777777776655232 226777777777777777777777777777
Q ss_pred ---hcCCCccH----HHHHHHHhhhccCcchHHHHHHHhhc
Q 048799 287 ---ERGYGGDY----VLMYNILAGVWRYGDAERLRRVVDER 320 (331)
Q Consensus 287 ---~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (331)
+|++...| ...+.++...|++++|+..|++..+.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 77776677 77777777777777777777776654
No 191
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.63 E-value=1.1e-06 Score=75.32 Aligned_cols=120 Identities=11% Similarity=-0.008 Sum_probs=61.4
Q ss_pred HHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCC
Q 048799 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGM 168 (331)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 168 (331)
+...+.+.|++++|.+.++++++..+. +..++..+..+|.+.|++++|+..++++.+..| +..+|..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 344455566666666666666655332 455555666666666666666666666655544 34555555556666666
Q ss_pred hHHHHHHHHHHHhccCCCCHHHHHHHHHH--HhccCChHHHHHHHH
Q 048799 169 GKEAVENFERMQKVVLKPNRVTFLSVLNA--CSHGGLVEEGLKFFD 212 (331)
Q Consensus 169 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~ 212 (331)
+++|++.|++..+... .+...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666665554321 112222223322 445555555555554
No 192
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.62 E-value=7.2e-07 Score=64.41 Aligned_cols=64 Identities=13% Similarity=0.051 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHhc
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQKV 182 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 182 (331)
+..++..+..+|.+.|++++|+..++++....| +..+|..+..+|...|++++|+..|++....
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 455666777777777777777777777766655 4566777777777777777777777776663
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.60 E-value=2.2e-08 Score=67.29 Aligned_cols=95 Identities=9% Similarity=-0.114 Sum_probs=75.3
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCC------CccHH
Q 048799 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY------GGDYV 295 (331)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~ 295 (331)
+...+..+...+...|++++|.+.|+++... +.+...+..+..++...|++++|++.++++++..|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777778888888888888888887766 3467788888888889999999999999998888887 56677
Q ss_pred HHHHHHhhhccCcchHHHHHHH
Q 048799 296 LMYNILAGVWRYGDAERLRRVV 317 (331)
Q Consensus 296 ~l~~~~~~~g~~~~a~~~~~~~ 317 (331)
.++.++...|+.+.|...++++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 7888888888888887665543
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.55 E-value=3.3e-07 Score=78.26 Aligned_cols=125 Identities=13% Similarity=0.042 Sum_probs=94.9
Q ss_pred HHhccCChHHHHHHHHHHHHhcC--C---CC-cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC--------Ccc-HHHHH
Q 048799 197 ACSHGGLVEEGLKFFDKMVEECE--V---LP-DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE--------ITN-VVVWR 261 (331)
Q Consensus 197 ~~~~~~~~~~a~~~~~~~~~~~~--~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~-~~~~~ 261 (331)
.+..+|++++|+.++++..+... + .| ...+++.|+..|...|++++|..+++++... .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35578899999988888776411 1 12 3467888888999999999998888876544 343 46788
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHH-----hhcCCCc---cHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 262 TLLGACSFHGNVEMGERVTRKILE-----MERGYGG---DYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 262 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
.|...|...|++++|+.+++++++ ++|+++. ....+..++...+++++|+.++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999987 3566543 34567778888899999999999887754
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.50 E-value=2.1e-06 Score=70.93 Aligned_cols=89 Identities=12% Similarity=-0.025 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHH
Q 048799 153 LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLID 232 (331)
Q Consensus 153 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (331)
..+|..+..+|.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|...|+++.+. .+.+...+..+..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~ 349 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3445555555555555555555555555422 123444555555555555555555555555543 1123444445555
Q ss_pred HHHhcCCHHHHH
Q 048799 233 MLGRAGRLEQAE 244 (331)
Q Consensus 233 ~~~~~g~~~~A~ 244 (331)
.+...++.+++.
T Consensus 350 ~~~~~~~~~~a~ 361 (370)
T 1ihg_A 350 VKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.46 E-value=8.3e-07 Score=56.92 Aligned_cols=83 Identities=14% Similarity=0.062 Sum_probs=65.7
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 048799 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 301 (331)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (331)
+...+..+...+...|++++|...++++... +.+...+..+..++...|++++|...++++.+.+|+++..+..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456677777788888888888888887766 335677888888888899999999999999988888878888888777
Q ss_pred hhhc
Q 048799 302 AGVW 305 (331)
Q Consensus 302 ~~~g 305 (331)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6554
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.42 E-value=3.6e-06 Score=71.92 Aligned_cols=59 Identities=3% Similarity=-0.208 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhhc--------CCc-HHHHHHHHHHHHccCChHHHHHHHHHH
Q 048799 121 HVSNCLIDTYAKCGCIFSALKLFEDISVE--------RKN-LVSWTSIISGFAMHGMGKEAVENFERM 179 (331)
Q Consensus 121 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m 179 (331)
.+++.|+.+|...|++++|+.+++++... .|+ ..+++.|...|...|++++|+.++++.
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444444444555555554444444322 121 233444444444444444444444443
No 198
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.36 E-value=3e-05 Score=67.80 Aligned_cols=171 Identities=9% Similarity=-0.003 Sum_probs=114.9
Q ss_pred hhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCC----------HhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccC-
Q 048799 100 VRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC----------IFSALKLFEDISVERK-NLVSWTSIISGFAMHG- 167 (331)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~- 167 (331)
.++|++.+++++...+. +..+|+.-..++...|+ ++++++.++.+....| +..+|+.-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~--~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch--hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 35667777777776544 56666666666666666 7777777777776655 5667777777777777
Q ss_pred -ChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhc--------
Q 048799 168 -MGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG-LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA-------- 237 (331)
Q Consensus 168 -~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 237 (331)
+++++++.++++.+.. +-+...|+.-...+.+.| .++++.+.++++++. .+-+...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--CCCCccHHHHHHHHHHhhcccccccc
Confidence 5677888887777754 235566666666666666 677777777777653 233666666666655553
Q ss_pred ------CCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhH
Q 048799 238 ------GRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEM 275 (331)
Q Consensus 238 ------g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~ 275 (331)
+.++++.+.+..+... +-+...|..+...+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 5578888888887766 3457788888887877776554
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.33 E-value=4.3e-07 Score=60.75 Aligned_cols=25 Identities=12% Similarity=-0.019 Sum_probs=9.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhh
Q 048799 123 SNCLIDTYAKCGCIFSALKLFEDIS 147 (331)
Q Consensus 123 ~~~l~~~~~~~g~~~~A~~~~~~~~ 147 (331)
+..+..++...|++++|+..|+++.
T Consensus 41 ~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 41 YSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.31 E-value=3.3e-06 Score=56.94 Aligned_cols=82 Identities=11% Similarity=-0.005 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 048799 206 EGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKIL 284 (331)
Q Consensus 206 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 284 (331)
.|...|++..+. .+.+...+..+...|...|++++|...|+++... +.+...|..+..++...|++++|...|+++.
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455566666542 2235566666667777777777777777766655 2345666677777777777777777777777
Q ss_pred HhhcC
Q 048799 285 EMERG 289 (331)
Q Consensus 285 ~~~~~ 289 (331)
+..|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 76654
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.28 E-value=5e-07 Score=63.82 Aligned_cols=88 Identities=8% Similarity=-0.073 Sum_probs=49.2
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCH----------HHHHHHHhhcccCCc-cHHHHHHHHHHHh
Q 048799 200 HGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL----------EQAEKVASGIPSEIT-NVVVWRTLLGACS 268 (331)
Q Consensus 200 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~p-~~~~~~~l~~~~~ 268 (331)
+.+.+++|.+.++...+. -+.+...|..+..++.+.|++ ++|+..|+++....| +...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 345566666666666654 122556666666666665543 355555555555533 3455555666655
Q ss_pred cCC-----------chhHHHHHHHHHHHhhcC
Q 048799 269 FHG-----------NVEMGERVTRKILEMERG 289 (331)
Q Consensus 269 ~~g-----------~~~~a~~~~~~~~~~~~~ 289 (331)
..| ++++|++.|+++++++|+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 443 566666666666665553
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.28 E-value=2.5e-06 Score=57.54 Aligned_cols=80 Identities=13% Similarity=0.077 Sum_probs=70.6
Q ss_pred HHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhc
Q 048799 242 QAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDER 320 (331)
Q Consensus 242 ~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 320 (331)
+|...|+++... +.+...+..+...+...|++++|+..++++++..|++...+..++.++...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466777777666 4467889999999999999999999999999999999899999999999999999999999988764
Q ss_pred c
Q 048799 321 N 321 (331)
Q Consensus 321 ~ 321 (331)
.
T Consensus 83 ~ 83 (115)
T 2kat_A 83 A 83 (115)
T ss_dssp H
T ss_pred c
Confidence 3
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.27 E-value=2.9e-06 Score=55.67 Aligned_cols=67 Identities=10% Similarity=-0.077 Sum_probs=51.8
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCc-cHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcC
Q 048799 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSEIT-NVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 289 (331)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 289 (331)
+...+..+...|...|++++|...|+++....| +...|..+..+|...|++++|.+.+++++++.|.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 566777788888888888888888888776633 4667778888888888888888888888876554
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.24 E-value=2.8e-06 Score=59.98 Aligned_cols=96 Identities=10% Similarity=-0.038 Sum_probs=55.8
Q ss_pred hcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCH----------hHHHHHHHHhhhcCC-cHHHHHHHHHHHH
Q 048799 96 QNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI----------FSALKLFEDISVERK-NLVSWTSIISGFA 164 (331)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 164 (331)
+.+.+++|.+.+++.++..+. +...|+.+..++...+++ ++|+..|+++....| +..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~--~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 344556666666666665433 555665566666655543 366666666666555 3556666666666
Q ss_pred ccC-----------ChHHHHHHHHHHHhccCCCCHHHHHHHH
Q 048799 165 MHG-----------MGKEAVENFERMQKVVLKPNRVTFLSVL 195 (331)
Q Consensus 165 ~~~-----------~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 195 (331)
..| ++++|++.|++.++ +.|+...|...+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 543 66777777776666 345555444333
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.17 E-value=5.6e-05 Score=52.72 Aligned_cols=88 Identities=10% Similarity=-0.070 Sum_probs=40.5
Q ss_pred HHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHh----cCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHc
Q 048799 90 VFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAK----CGCIFSALKLFEDISVERKNLVSWTSIISGFAM 165 (331)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (331)
+...|...+.+++|.+.|++..+.| ++..+..|...|.. .+++++|..+|++..+. .++.++..+...|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-NDQDGCLILGYKQYA 105 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHC
Confidence 3444444444455555555555443 23344444444444 44555555555544322 233344444444444
Q ss_pred ----cCChHHHHHHHHHHHhc
Q 048799 166 ----HGMGKEAVENFERMQKV 182 (331)
Q Consensus 166 ----~~~~~~a~~~~~~m~~~ 182 (331)
.+++++|+..|++..+.
T Consensus 106 G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 106 GKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp TSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCCcCHHHHHHHHHHHHHC
Confidence 44455555555544443
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.15 E-value=4.3e-05 Score=53.33 Aligned_cols=111 Identities=6% Similarity=-0.130 Sum_probs=80.9
Q ss_pred cCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHc----cCChHHH
Q 048799 97 NGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAM----HGMGKEA 172 (331)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 172 (331)
.++.++|...|++..+.|.. .. . |...|...+.+++|.+.|++..+. .+..++..+...|.. .+++++|
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~--~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEM--FG--C--LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCT--TH--H--HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCH--hh--h--HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45678888888888887743 22 2 677777777788888888877644 456677777777776 6788888
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHh
Q 048799 173 VENFERMQKVVLKPNRVTFLSVLNACSH----GGLVEEGLKFFDKMVEE 217 (331)
Q Consensus 173 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 217 (331)
+++|++..+.| +...+..|...|.. .++.++|..+|++..+.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 88888887754 45556667777776 77888888888887765
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.14 E-value=2.2e-05 Score=50.04 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 048799 124 NCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQ 180 (331)
Q Consensus 124 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 180 (331)
..+...+...|++++|...|++.....| +...+..+..++...|++++|+..|++..
T Consensus 13 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333444444444444444444333322 23333334444444444444444444433
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.08 E-value=2.7e-05 Score=50.94 Aligned_cols=60 Identities=8% Similarity=-0.014 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHh
Q 048799 85 ITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDI 146 (331)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 146 (331)
..+..+..++...|++++|+..|+++++..+. +..+|..+..+|...|++++|...|++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPD--YVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444444444444444444444322 3334444444444444444444444444
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.07 E-value=5e-06 Score=54.26 Aligned_cols=65 Identities=12% Similarity=0.022 Sum_probs=44.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhcccCCc-cHH-HHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccH
Q 048799 230 LIDMLGRAGRLEQAEKVASGIPSEIT-NVV-VWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY 294 (331)
Q Consensus 230 l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 294 (331)
....+.+.|++++|...++++....| +.. .+..+..++...|++++|.+.|+++++.+|++...+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34456667777777777777665533 455 677777777777777777777777777777765554
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.02 E-value=0.00099 Score=53.99 Aligned_cols=152 Identities=11% Similarity=0.003 Sum_probs=77.2
Q ss_pred HHHHHHhhCCCCCchhHHHHHHHH--HhcC---ChhHHHHHHHHHHhccCCCCc-hHHHHHHHHHHhh---cC-----ch
Q 048799 35 YARSLFEEMPCRNVVSWTGIIDGY--TRMN---RSNGALALFRRMVACEYTEPS-EITILAVFPAIWQ---NG-----DV 100 (331)
Q Consensus 35 ~A~~~~~~~~~~~~~~~~~l~~~~--~~~~---~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~-----~~ 100 (331)
++.+.....+ .+..+|...+++. ...+ +..+|..+|++.+.. .|+ ...+..+..++.. .+ ..
T Consensus 182 e~~r~~~~~p-~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~ 257 (372)
T 3ly7_A 182 MQETLQKILP-HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQL 257 (372)
T ss_dssp HHHHHHHHSC-SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHhccCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhH
Confidence 3333444333 3566676666553 3333 346788888887542 343 3344433333321 00 01
Q ss_pred hHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 048799 101 RNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180 (331)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 180 (331)
......+.........|.++.++..+...+...|++++|...++++...+|+...|..+...+...|++++|.+.|++..
T Consensus 258 ~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 258 AALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp HHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11111111111222223355566555555555666666666666666666665556556666666666666666666666
Q ss_pred hccCCCCHHHHH
Q 048799 181 KVVLKPNRVTFL 192 (331)
Q Consensus 181 ~~~~~p~~~~~~ 192 (331)
. +.|...||.
T Consensus 338 r--L~P~~~t~~ 347 (372)
T 3ly7_A 338 N--LRPGANTLY 347 (372)
T ss_dssp H--HSCSHHHHH
T ss_pred h--cCCCcChHH
Confidence 5 335555544
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.96 E-value=3.1e-05 Score=49.76 Aligned_cols=66 Identities=11% Similarity=0.028 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhcc
Q 048799 256 NVVVWRTLLGACSFHGN---VEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERN 321 (331)
Q Consensus 256 ~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 321 (331)
++..+..+..++...++ .++|..+++++++.+|+++.....++..+.+.|++++|...++++.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 44444445554432222 4555566666665556555555555555555666666666665555543
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.93 E-value=0.00092 Score=54.18 Aligned_cols=48 Identities=4% Similarity=-0.150 Sum_probs=25.5
Q ss_pred CCchHHHHHHHHHHh--h---cCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHH
Q 048799 81 EPSEITILAVFPAIW--Q---NGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTY 130 (331)
Q Consensus 81 ~~~~~~~~~l~~~~~--~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (331)
+.+...|...+++.. . ..+..+|..+|+++++..+. ...++..+.-+|
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~--~a~A~A~la~a~ 243 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE--FTYARAEKALVD 243 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Confidence 445555555554432 2 22346777777777777443 444554444444
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.90 E-value=0.00035 Score=54.35 Aligned_cols=83 Identities=8% Similarity=-0.036 Sum_probs=40.4
Q ss_pred HHHHHHHhhcccCCcc---HHHHHHHHHHHhcC-----CchhHHHHHHHHHHHhhcCC-CccHHHHHHHHhhh-ccCcch
Q 048799 241 EQAEKVASGIPSEITN---VVVWRTLLGACSFH-----GNVEMGERVTRKILEMERGY-GGDYVLMYNILAGV-WRYGDA 310 (331)
Q Consensus 241 ~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~a 310 (331)
..|...++++.+..|+ ...|..+...|... |+.++|.+.|+++++++|+. ..++..++..++.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 3444444444444333 33455555555442 55555555555555555542 45555555555442 555555
Q ss_pred HHHHHHHhhcccc
Q 048799 311 ERLRRVVDERNAL 323 (331)
Q Consensus 311 ~~~~~~~~~~~~~ 323 (331)
.+.+++.......
T Consensus 260 ~~~L~kAL~a~p~ 272 (301)
T 3u64_A 260 DEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHCCGG
T ss_pred HHHHHHHHcCCCC
Confidence 5555555544433
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.87 E-value=4.8e-05 Score=63.88 Aligned_cols=86 Identities=17% Similarity=0.042 Sum_probs=66.0
Q ss_pred ccCChHHHHHHHHHHHHhc--CCCC----cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC--------Ccc-HHHHHHHH
Q 048799 200 HGGLVEEGLKFFDKMVEEC--EVLP----DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE--------ITN-VVVWRTLL 264 (331)
Q Consensus 200 ~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~-~~~~~~l~ 264 (331)
..|++++|+.++++..+.. -+.| ...+++.|..+|...|++++|..+++++... .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578889998888876631 1112 2467888888999999999998888876544 344 36788889
Q ss_pred HHHhcCCchhHHHHHHHHHHH
Q 048799 265 GACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 265 ~~~~~~g~~~~a~~~~~~~~~ 285 (331)
..|...|++++|+.+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999987
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.80 E-value=0.00011 Score=61.75 Aligned_cols=100 Identities=13% Similarity=0.010 Sum_probs=75.3
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhc--CCCC----cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC--------Ccc-HH
Q 048799 194 VLNACSHGGLVEEGLKFFDKMVEEC--EVLP----DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE--------ITN-VV 258 (331)
Q Consensus 194 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~-~~ 258 (331)
.+..+...|++++|+.++++..+.. -+.| ...+++.++..|...|++++|..+++++... .|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3445667889999999998887531 1122 2457888889999999999999888876644 343 46
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHH-----hhcCCCcc
Q 048799 259 VWRTLLGACSFHGNVEMGERVTRKILE-----MERGYGGD 293 (331)
Q Consensus 259 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ 293 (331)
+++.|...|...|++++|+.+++++++ .+|+++.+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 788899999999999999999999987 35666433
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.75 E-value=4.5e-05 Score=49.57 Aligned_cols=55 Identities=11% Similarity=0.096 Sum_probs=26.9
Q ss_pred HHhccCChHHHHHHHHHHHHhcCCCCcHh-hHHHHHHHHHhcCCHHHHHHHHhhcccC
Q 048799 197 ACSHGGLVEEGLKFFDKMVEECEVLPDIK-HYGCLIDMLGRAGRLEQAEKVASGIPSE 253 (331)
Q Consensus 197 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 253 (331)
.+...|++++|...++++.+. .+.+.. .+..+..+|...|++++|.+.|+++...
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344455555555555555443 112333 4455555555555555555555555444
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.70 E-value=3e-05 Score=65.13 Aligned_cols=85 Identities=8% Similarity=0.027 Sum_probs=68.8
Q ss_pred hcCCHHHHHHHHhhcccC--------Ccc-HHHHHHHHHHHhcCCchhHHHHHHHHHHHh-----hcCCC---ccHHHHH
Q 048799 236 RAGRLEQAEKVASGIPSE--------ITN-VVVWRTLLGACSFHGNVEMGERVTRKILEM-----ERGYG---GDYVLMY 298 (331)
Q Consensus 236 ~~g~~~~A~~~~~~~~~~--------~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~---~~~~~l~ 298 (331)
..|++++|..++++.... .|+ ..+++.+..+|...|++++|+.+++++++. .|+++ ..+..|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357888998888776543 333 478899999999999999999999999972 44443 5688899
Q ss_pred HHHhhhccCcchHHHHHHHhhc
Q 048799 299 NILAGVWRYGDAERLRRVVDER 320 (331)
Q Consensus 299 ~~~~~~g~~~~a~~~~~~~~~~ 320 (331)
.+|..+|++++|+.++++..+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999887653
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.63 E-value=9.1e-05 Score=62.29 Aligned_cols=89 Identities=16% Similarity=0.052 Sum_probs=72.7
Q ss_pred HHHHHhcCCHHHHHHHHhhcccC--------Ccc-HHHHHHHHHHHhcCCchhHHHHHHHHHHHh-----hcCCC---cc
Q 048799 231 IDMLGRAGRLEQAEKVASGIPSE--------ITN-VVVWRTLLGACSFHGNVEMGERVTRKILEM-----ERGYG---GD 293 (331)
Q Consensus 231 ~~~~~~~g~~~~A~~~~~~~~~~--------~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~---~~ 293 (331)
+..+.+.|++++|..+++++... .|+ ..+++.+..+|...|++++|+.+++++++. .|+++ ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 45566889999999999877644 222 477899999999999999999999999972 34443 46
Q ss_pred HHHHHHHHhhhccCcchHHHHHHHhh
Q 048799 294 YVLMYNILAGVWRYGDAERLRRVVDE 319 (331)
Q Consensus 294 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (331)
+..|+.+|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 78899999999999999999988765
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.63 E-value=0.00031 Score=46.15 Aligned_cols=75 Identities=16% Similarity=0.049 Sum_probs=53.7
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC--------CccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccH
Q 048799 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE--------ITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY 294 (331)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 294 (331)
+..-+..|+..+.+.|++..|..+|+.+... .+....+..+..++.+.|+++.|...++++.+..|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3344455666666777777777766665543 23567788888999999999999999999999889885554
Q ss_pred HHH
Q 048799 295 VLM 297 (331)
Q Consensus 295 ~~l 297 (331)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 443
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.60 E-value=0.004 Score=57.08 Aligned_cols=132 Identities=13% Similarity=0.027 Sum_probs=71.2
Q ss_pred HHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccC
Q 048799 88 LAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHG 167 (331)
Q Consensus 88 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 167 (331)
..++..+.+.|..+.|.++.+. + . .-.......|++++|.++.+.+ .+...|..+...+.+.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-------~-~-----~~f~~~l~~~~~~~A~~~~~~~----~~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-------Q-D-----QKFELALKVGQLTLARDLLTDE----SAEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-------H-H-----HHHHHHHHHTCHHHHHHHHTTC----CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCChHHheecCCC-------c-c-----hheehhhhcCCHHHHHHHHHhh----CcHhHHHHHHHHHHHcC
Confidence 4455555666666666655421 1 1 1123345567777777665443 34566777777777777
Q ss_pred ChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHH
Q 048799 168 MGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247 (331)
Q Consensus 168 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 247 (331)
+++.|.+.|.++.. |..+...+...|+.+...++-+..... | -++.-..+|.+.|++++|.+++
T Consensus 696 ~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 696 NFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp CHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHH
Confidence 77777777776543 333444444455555555444444332 2 1222333455566666666665
Q ss_pred hhccc
Q 048799 248 SGIPS 252 (331)
Q Consensus 248 ~~~~~ 252 (331)
.++..
T Consensus 760 ~~~~~ 764 (814)
T 3mkq_A 760 IKSQR 764 (814)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 55543
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.54 E-value=0.00067 Score=43.42 Aligned_cols=63 Identities=11% Similarity=-0.067 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHhcCC---HhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 048799 119 HIHVSNCLIDTYAKCGC---IFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQK 181 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 181 (331)
++..+..+..++...++ .++|..+++++....| ++.+...+...+.+.|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33444444444433222 3455555555444433 234444444444455555555555555444
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.46 E-value=0.007 Score=55.44 Aligned_cols=128 Identities=14% Similarity=0.003 Sum_probs=87.0
Q ss_pred HHHHHHcCCHHHHHH-HHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhH
Q 048799 24 ITGLVKWGELEYARS-LFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRN 102 (331)
Q Consensus 24 ~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 102 (331)
.......+++++|.+ ++..++. ......++..+.+.|..++|+++.+.- . .-.......|+++.
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~-----~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPDQ--------D-----QKFELALKVGQLTL 670 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCCH--------H-----HHHHHHHHHTCHHH
T ss_pred HhHHHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCCc--------c-----hheehhhhcCCHHH
Confidence 344457899999998 7755541 223377778888899999988765321 1 11334467899999
Q ss_pred HHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 048799 103 CQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180 (331)
Q Consensus 103 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 180 (331)
|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-+...
T Consensus 671 A~~~~~~~~-------~~~~W~~la~~al~~~~~~~A~~~y~~~~d-------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 671 ARDLLTDES-------AEMKWRALGDASLQRFNFKLAIEAFTNAHD-------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHTTCC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhC-------cHhHHHHHHHHHHHcCCHHHHHHHHHHccC-------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 999876542 678999999999999999999999998732 3333444444565555444443333
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.45 E-value=0.001 Score=46.46 Aligned_cols=87 Identities=10% Similarity=-0.134 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcC---CHHHHHHHHhhcccCC-c--cHHHHHHHHHHHhcCCchhHHHH
Q 048799 205 EEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAG---RLEQAEKVASGIPSEI-T--NVVVWRTLLGACSFHGNVEMGER 278 (331)
Q Consensus 205 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p--~~~~~~~l~~~~~~~g~~~~a~~ 278 (331)
..+.+-|.+..+. + +++..+...+..++++.+ +++++..+++...... | +...+-.+.-++.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4445555555443 3 256666667777777766 5557777777766653 4 34556667777888889999999
Q ss_pred HHHHHHHhhcCCCcc
Q 048799 279 VTRKILEMERGYGGD 293 (331)
Q Consensus 279 ~~~~~~~~~~~~~~~ 293 (331)
.++.+++.+|++...
T Consensus 93 y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHhcCCCCHHH
Confidence 999988888877433
No 224
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.36 E-value=3.3e-09 Score=87.22 Aligned_cols=224 Identities=12% Similarity=0.057 Sum_probs=136.8
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHH
Q 048799 47 NVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCL 126 (331)
Q Consensus 47 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 126 (331)
.+..|..|..+....+.+.+|++.|-+. .|+..|..++.+..+.|.+++-...+..+.+..-+| .+=+.|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~---~IDteL 122 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES---YVETEL 122 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST---TTTHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc---ccHHHH
Confidence 3456888888888888888888777443 345567788888889999999998888887764433 344578
Q ss_pred HHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHH
Q 048799 127 IDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEE 206 (331)
Q Consensus 127 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 206 (331)
+-+|++.++..+-++++. .|+..-...+..-|...|.++.|.-+|..+-. |..|...+.+.|++..
T Consensus 123 i~ayAk~~rL~elEefl~-----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHHHTSCSSSTTTSTTS-----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred HHHHHhhCcHHHHHHHHc-----CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence 889999888776554432 46666666777777888888877777754422 3334444555666655
Q ss_pred HHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHHh
Q 048799 207 GLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEM 286 (331)
Q Consensus 207 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 286 (331)
|.+.-++ .-++.||..+-.+|...+.+.-|.-.--.++-. +.-...++.-|-..|.+++.+.+++..+.+
T Consensus 189 AVdaArK-------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---adeL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 189 AVDGARK-------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---ADELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp STTTTTT-------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHHh-------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 5432211 224556666666666666555443332222111 001112344455556666666666665554
Q ss_pred hcCCCccHHHHHHHHhhh
Q 048799 287 ERGYGGDYVLMYNILAGV 304 (331)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~ 304 (331)
...+...|..|+.+|++.
T Consensus 259 ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 259 ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp TTCCHHHHHHHHHHHHSS
T ss_pred CchhHHHHHHHHHHHHhc
Confidence 444545555555555544
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.25 E-value=0.0022 Score=44.72 Aligned_cols=69 Identities=13% Similarity=-0.024 Sum_probs=39.5
Q ss_pred CchHHHHHHHHHHhhcC---chhHHHHHHhhhhhcC-CCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 048799 82 PSEITILAVFPAIWQNG---DVRNCQLIHGYGEKRG-FNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151 (331)
Q Consensus 82 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 151 (331)
++..+...+..++++++ +.++++.+++...+.. +.. ....+..|.-++.+.|++++|.+.++.+.+..|
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~-~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP 102 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE-QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 102 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc-hHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 45555555666666655 4556666666666654 111 233444555566666666666666666665555
No 226
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.20 E-value=0.11 Score=47.60 Aligned_cols=254 Identities=7% Similarity=-0.070 Sum_probs=141.0
Q ss_pred HHHHcCCHHHHHHHHhhCCC----CCch--hHHHHHHHHHhcCChhHHHHHHHHHHhccCC------CCchHHHHHH--H
Q 048799 26 GLVKWGELEYARSLFEEMPC----RNVV--SWTGIIDGYTRMNRSNGALALFRRMVACEYT------EPSEITILAV--F 91 (331)
Q Consensus 26 ~~~~~g~~~~A~~~~~~~~~----~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~l--~ 91 (331)
+....|+.++++.++..... .+.. .=..+.-+.+..|...++..++...+..... .+....-..+ .
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 35567888888888887653 1211 2223334456667666788877776443210 0111112222 2
Q ss_pred HHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcH-HHHHHHHHHHHccCChH
Q 048799 92 PAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNL-VSWTSIISGFAMHGMGK 170 (331)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 170 (331)
.++.-.++ +++.+.+..++..........+-.+|...+.-.|+-+....++..+.....+. .-...+.-++...|+.+
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 23333333 34555555554432111011222344555667788777777777765543332 22333344555788888
Q ss_pred HHHHHHHHHHhccCCCCHHHHH---HHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHH
Q 048799 171 EAVENFERMQKVVLKPNRVTFL---SVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVA 247 (331)
Q Consensus 171 ~a~~~~~~m~~~~~~p~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 247 (331)
.+..+++.+... ..|. .-|. .+..+|+..|+.....+++..+.+. ...+......+.-++...|+.+.+.+++
T Consensus 542 ~~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 542 LADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 888888887753 1222 2232 4455788899988888899988764 2233443344444555678877788888
Q ss_pred hhcccC-CccHHHHHHHHHHHhcCCch-hHHHHHHHHHH
Q 048799 248 SGIPSE-ITNVVVWRTLLGACSFHGNV-EMGERVTRKIL 284 (331)
Q Consensus 248 ~~~~~~-~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 284 (331)
..+... .|....-..+.-+....|.. .++...+..+.
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 776655 44444444444445555554 46777777775
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.14 E-value=0.0038 Score=40.81 Aligned_cols=32 Identities=19% Similarity=0.069 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 048799 120 IHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151 (331)
Q Consensus 120 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 151 (331)
..++..|..++.+.|+++.|...++++....|
T Consensus 46 ~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 46 VSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 34444445555555555555555554444433
No 228
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.09 E-value=2.7e-06 Score=70.38 Aligned_cols=250 Identities=9% Similarity=0.077 Sum_probs=157.6
Q ss_pred cchhHHhhhcCCchHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCC
Q 048799 3 KDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEP 82 (331)
Q Consensus 3 ~~A~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 82 (331)
+.|.+.-++..+| ..|..|..+..+.|++.+|++-| ++..|+..|..++.+..+.|.+++-+..+.-. ++..-.|
T Consensus 42 dRa~eyA~~~n~p--~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~Ma-Rk~~ke~ 116 (624)
T 3lvg_A 42 DRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMA-RKKARES 116 (624)
T ss_dssp TTTTTSSSSCCCC--CCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTT-STTCCST
T ss_pred HHHHHHHHHhCCc--cHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHH-HHHhccc
Confidence 3344433343344 45888999998889888888777 44557777889999999999999999988765 4443333
Q ss_pred chHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhh--------------
Q 048799 83 SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV-------------- 148 (331)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------- 148 (331)
..=+.|+-+|++.++..+..+++.. | +..-...+++-|...|.++.|.-+|..+..
T Consensus 117 --~IDteLi~ayAk~~rL~elEefl~~-------~-N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~y 186 (624)
T 3lvg_A 117 --YVETELIFALAKTNRLAELEEFING-------P-NNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEY 186 (624)
T ss_dssp --TTTHHHHHHHHTSCSSSTTTSTTSC-------C-SSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGG
T ss_pred --ccHHHHHHHHHhhCcHHHHHHHHcC-------C-CcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 3344688889998887766554432 2 333334567777778888777777665422
Q ss_pred --------cCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCC
Q 048799 149 --------ERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEV 220 (331)
Q Consensus 149 --------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 220 (331)
...++.+|..+-.+|...+.+.-|.-.--.++ +.|+ ....++..|...|.+++-+.+++.-. |.
T Consensus 187 q~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEagl---gl 258 (624)
T 3lvg_A 187 QAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAAL---GL 258 (624)
T ss_dssp GSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHT---TS
T ss_pred HHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHh---CC
Confidence 12356778888888888877665543332222 1122 12345666777888888877777765 33
Q ss_pred -CCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC--Cc-------cHHHHHHHHHHHhcCCchhHH
Q 048799 221 -LPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE--IT-------NVVVWRTLLGACSFHGNVEMG 276 (331)
Q Consensus 221 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p-------~~~~~~~l~~~~~~~g~~~~a 276 (331)
.....+|+-|.-.|++- ++++..+.++....+ .| ....|.-++-.|.+-.+++.|
T Consensus 259 ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 259 ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence 34667777777777654 455555555554443 22 234466666666666666544
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.05 E-value=0.004 Score=48.51 Aligned_cols=86 Identities=14% Similarity=0.031 Sum_probs=59.9
Q ss_pred hhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhc-----CCHhHHHHHHHHhhhcCCc--HHHHHHHHHHHHcc-CChHH
Q 048799 100 VRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKC-----GCIFSALKLFEDISVERKN--LVSWTSIISGFAMH-GMGKE 171 (331)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~-~~~~~ 171 (331)
...|...++++++..+.-.+..+|..|+..|... |+.++|.+.|++.....|+ ..++......++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 4566777777777755433456777777777774 7888888888887777662 66666777777664 77888
Q ss_pred HHHHHHHHHhccCC
Q 048799 172 AVENFERMQKVVLK 185 (331)
Q Consensus 172 a~~~~~~m~~~~~~ 185 (331)
+.+.+++.+.....
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 88888777775544
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.77 E-value=0.025 Score=37.98 Aligned_cols=89 Identities=10% Similarity=-0.150 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHH---HHHHHhhcccCC-c--cHHHHHHHHHHHhcCCchhHHH
Q 048799 204 VEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ---AEKVASGIPSEI-T--NVVVWRTLLGACSFHGNVEMGE 277 (331)
Q Consensus 204 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p--~~~~~~~l~~~~~~~g~~~~a~ 277 (331)
...+.+-|...... +. ++..+-..+..++.+..+..+ +..+++...... | .....-.+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34445555555444 33 566666677777777776655 777777776663 4 2344555667888999999999
Q ss_pred HHHHHHHHhhcCCCccH
Q 048799 278 RVTRKILEMERGYGGDY 294 (331)
Q Consensus 278 ~~~~~~~~~~~~~~~~~ 294 (331)
+.++.+++..|++..+.
T Consensus 95 ~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhCCCCHHHH
Confidence 99999999999874443
No 231
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=96.64 E-value=0.14 Score=48.85 Aligned_cols=52 Identities=10% Similarity=0.071 Sum_probs=36.0
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHH
Q 048799 22 VMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRM 74 (331)
Q Consensus 22 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 74 (331)
.++..+.+.+.++.|.++...... +...--.+..++...|++++|...|++.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 355566677777777777666654 3333345667788888888888888775
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.59 E-value=0.087 Score=35.68 Aligned_cols=59 Identities=12% Similarity=0.127 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 227 YGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 227 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
...-+..+...|+-+.-.+++..+... +|++.....+..+|.+.|+..+|.+++.++-+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 334444555556666655665553222 45555555556666666666666666655554
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.57 E-value=0.025 Score=37.95 Aligned_cols=87 Identities=9% Similarity=-0.135 Sum_probs=48.7
Q ss_pred ChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhH---HHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHH
Q 048799 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRN---CQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSA 139 (331)
Q Consensus 63 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 139 (331)
....+.+-|.+. ...+. |+..+-..+..+++++++... ++.+++.+.+.+.+.........|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e-~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSE-KAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHH-HHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHH-hccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344445555544 22222 555565566666666655444 6666766666542111333444566667777777777
Q ss_pred HHHHHHhhhcCC
Q 048799 140 LKLFEDISVERK 151 (331)
Q Consensus 140 ~~~~~~~~~~~~ 151 (331)
.+.++.+....|
T Consensus 94 ~~~~~~lL~~eP 105 (126)
T 1nzn_A 94 LKYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHhCC
Confidence 777777766655
No 234
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.55 E-value=0.37 Score=42.46 Aligned_cols=115 Identities=10% Similarity=-0.006 Sum_probs=73.4
Q ss_pred CChHHHHHHHHHHHhccCCCCHHHH----HHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHH
Q 048799 167 GMGKEAVENFERMQKVVLKPNRVTF----LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 242 (331)
Q Consensus 167 ~~~~~a~~~~~~m~~~~~~p~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 242 (331)
.+.+.|...+....... ..+.... ..+.......+...++...+...... .++.....-.+..-.+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 37889999998876543 2233222 23333334445356667777765543 2344444455555567899999
Q ss_pred HHHHHhhcccCCcc-HHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 243 AEKVASGIPSEITN-VVVWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 243 A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
|.+.|..+....++ ....-=+..++...|+.++|..+|+.+.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999999876222 22222255677788999999999999874
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.16 Score=36.44 Aligned_cols=105 Identities=14% Similarity=0.125 Sum_probs=65.5
Q ss_pred HHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHH
Q 048799 128 DTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEG 207 (331)
Q Consensus 128 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 207 (331)
......|+++.|.++.+.+ .+...|..+.......|+++-|...|.+... +..+.-.|...|+.+..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 4456677777777776655 3466777777777777777777777776544 33444445556666665
Q ss_pred HHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhccc
Q 048799 208 LKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPS 252 (331)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 252 (331)
.++-+....+ | -++.-...+...|+++++.++|.+...
T Consensus 80 ~kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 80 SKMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 5554444433 2 233444456667777777777766554
No 236
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.26 E-value=0.055 Score=38.15 Aligned_cols=124 Identities=9% Similarity=0.004 Sum_probs=63.6
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCC-----CCCc-------hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchH-HHH
Q 048799 22 VMITGLVKWGELEYARSLFEEMP-----CRNV-------VSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEI-TIL 88 (331)
Q Consensus 22 ~l~~~~~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ 88 (331)
.-+..+...|.++.|+-+.+.+. .+++ .++..+.+++...|++.+|...|++.+.....-+... +..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 34555666777777776666543 2332 1455566677777777777777777533322212111 111
Q ss_pred HHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHH
Q 048799 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSI 159 (331)
Q Consensus 89 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 159 (331)
.+. . ....... ..... +..+-..+..+|.+.|++++|+.+++.+.....++..-..|
T Consensus 105 ~~~-~---~ss~p~s---------~~~~~-e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~L 161 (167)
T 3ffl_A 105 STG-N---SASTPQS---------QCLPS-EIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLL 161 (167)
T ss_dssp -------------------------CCCC-HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHH
T ss_pred ccc-c---cCCCccc---------ccccc-hHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHH
Confidence 110 0 0000000 00111 44555668888888888888888888876554444433333
No 237
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.24 E-value=0.074 Score=37.50 Aligned_cols=130 Identities=12% Similarity=-0.029 Sum_probs=72.4
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhhc---CCcH-------HHHHHHHHHHHccCChHHHHHHHHHHHhcc-CCCCHH-HH
Q 048799 124 NCLIDTYAKCGCIFSALKLFEDISVE---RKNL-------VSWTSIISGFAMHGMGKEAVENFERMQKVV-LKPNRV-TF 191 (331)
Q Consensus 124 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~-~~ 191 (331)
..-+..+...|.++.|+-+...+... +++. .++..+..++...|++..|...|++.++.. ..+... +.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 34466777788888888777665433 2331 245566677888888888888888765432 112111 11
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHH
Q 048799 192 LSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGAC 267 (331)
Q Consensus 192 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~ 267 (331)
..+. ....... .. ...++...--.+..+|.+.|++++|+.+++.+....-++.+-..|.+.|
T Consensus 104 ~~~~----~~ss~p~---------s~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 104 PSTG----NSASTPQ---------SQ-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred cccc----ccCCCcc---------cc-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 1110 0000000 00 2233445555677888889999999999988876644555554454443
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.025 Score=50.70 Aligned_cols=124 Identities=10% Similarity=0.020 Sum_probs=79.2
Q ss_pred HHHHHHHhccCC-hHHHHHHHHHHHHhcCCCCcHhhH--HHHHHHHHhcC-CHHHHHHHHhhcccC--------Cc-cH-
Q 048799 192 LSVLNACSHGGL-VEEGLKFFDKMVEECEVLPDIKHY--GCLIDMLGRAG-RLEQAEKVASGIPSE--------IT-NV- 257 (331)
Q Consensus 192 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g-~~~~A~~~~~~~~~~--------~p-~~- 257 (331)
..++..+...++ .+.|.++++++.+. .|...++ ..++..+...+ +--+|.+++.+..+. .+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 445555555556 47788888888775 3433322 22333222222 223444444443311 01 11
Q ss_pred ---------HHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHh
Q 048799 258 ---------VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVD 318 (331)
Q Consensus 258 ---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 318 (331)
.....=..-+...|+++.|+++.+++....|....+|..|+.+|...|+++.|+-.++.+.
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1111113446678999999999999999999999999999999999999999999998874
No 239
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=96.10 E-value=0.43 Score=45.64 Aligned_cols=191 Identities=11% Similarity=0.059 Sum_probs=119.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCC------------------
Q 048799 125 CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP------------------ 186 (331)
Q Consensus 125 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p------------------ 186 (331)
.++..+...+.++-+.++..-. +.++..--.+..++...|++++|.+.|.+... |+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~---~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL---NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS---CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc---cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccc
Confidence 4555666777777776654433 23343444566788899999999999987521 1100
Q ss_pred -----CHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCC-c--HhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHH
Q 048799 187 -----NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP-D--IKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVV 258 (331)
Q Consensus 187 -----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 258 (331)
-..-|..++..+.+.|.++.+.++-..+.+..+-.+ + ...|..+.+.+...|++++|...+-.+....-...
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~ 972 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKS 972 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHH
Confidence 123367788888889999999988888876522121 1 12678889999999999999998877765533456
Q ss_pred HHHHHHHHHhcCCchh------------HHHHHHHHH-HHh-hcCCCccHH-HHHHHHhhhccCcchHHH-HHHHhh
Q 048799 259 VWRTLLGACSFHGNVE------------MGERVTRKI-LEM-ERGYGGDYV-LMYNILAGVWRYGDAERL-RRVVDE 319 (331)
Q Consensus 259 ~~~~l~~~~~~~g~~~------------~a~~~~~~~-~~~-~~~~~~~~~-~l~~~~~~~g~~~~a~~~-~~~~~~ 319 (331)
....|+..++..|..+ +..+++..- ... .+.+.+.|. .|-.-+...|++..|-.+ ++...+
T Consensus 973 cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 973 CLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 6677777666665543 333333222 222 344434444 445555677777776554 454433
No 240
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.25 Score=35.42 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=8.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHH
Q 048799 51 WTGIIDGYTRMNRSNGALALFR 72 (331)
Q Consensus 51 ~~~l~~~~~~~~~~~~a~~~~~ 72 (331)
|..|.......|+++-|...|.
T Consensus 37 Wk~Lg~~AL~~gn~~lAe~cy~ 58 (177)
T 3mkq_B 37 WERLIQEALAQGNASLAEMIYQ 58 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHH
Confidence 3333333333333333333333
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.01 E-value=0.21 Score=34.57 Aligned_cols=48 Identities=17% Similarity=0.128 Sum_probs=22.2
Q ss_pred CChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 048799 167 GMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMV 215 (331)
Q Consensus 167 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 215 (331)
++.++|.++|+.++..+-.. ...+......-.++|++..|.+++.+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~Ai 121 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAV 121 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 45555555555554432222 3333333344444555555555555554
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.90 E-value=0.15 Score=35.24 Aligned_cols=54 Identities=13% Similarity=-0.061 Sum_probs=34.2
Q ss_pred cCCHhHHHHHHHHhhhcC-CcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCC
Q 048799 133 CGCIFSALKLFEDISVER-KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKP 186 (331)
Q Consensus 133 ~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 186 (331)
.++.++|.++|+.+.+.. .-...|......-.+.|+...|.+++.+.+..+..|
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 367777777777765441 224556566666667777777777777776655443
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.83 E-value=1.1 Score=41.27 Aligned_cols=278 Identities=10% Similarity=0.048 Sum_probs=150.1
Q ss_pred ccchhHHhhhcCC----ch--HHHHHHHHHHHHHcCCHHHHHHHHhhCC-CCC----------chhHHHHHHHHHhcCC-
Q 048799 2 LKDGSKLFDELPE----RN--LVTWNVMITGLVKWGELEYARSLFEEMP-CRN----------VVSWTGIIDGYTRMNR- 63 (331)
Q Consensus 2 ~~~A~~~~~~~~~----p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----------~~~~~~l~~~~~~~~~- 63 (331)
+++++++++.-.. .+ ...-..+.-+....|..+++..++.... .++ ...-.++.-+++-.|.
T Consensus 390 ~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~ 469 (963)
T 4ady_A 390 LLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA 469 (963)
T ss_dssp TTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC
T ss_pred hHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC
Confidence 3556666665442 12 2233334445556666667777666543 222 1112233333433343
Q ss_pred hhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHH
Q 048799 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLF 143 (331)
Q Consensus 64 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 143 (331)
-+++.+.+..++...........-..+...++-.|+.+-...++..+.+.... +..-...+.-++.-.|+.+.+..+.
T Consensus 470 ~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e--~vrR~aalgLGll~~g~~e~~~~li 547 (963)
T 4ady_A 470 NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHG--NITRGLAVGLALINYGRQELADDLI 547 (963)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCH--HHHHHHHHHHHHHTTTCGGGGHHHH
T ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcH--HHHHHHHHHHHhhhCCChHHHHHHH
Confidence 24566666666442211000112223444566778888778888777654321 3333334445555789999999988
Q ss_pred HHhhhcCCcHHHHH---HHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCC
Q 048799 144 EDISVERKNLVSWT---SIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEV 220 (331)
Q Consensus 144 ~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 220 (331)
+.+........-|. ++..+|+-.|+.....+++..+.... ..+......+.-++...|+.+.+.++++.+.+. .
T Consensus 548 ~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~--~ 624 (963)
T 4ady_A 548 TKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS--H 624 (963)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC--S
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc--C
Confidence 88865433333333 44557888899887777998887642 223333333333444567777777777766543 3
Q ss_pred CCcHhhHHHHHHHHHhcCCH-HHHHHHHhhcccCCccHHHHHHHH--HHHhcCCchh----HHHHHHHHHHH
Q 048799 221 LPDIKHYGCLIDMLGRAGRL-EQAEKVASGIPSEITNVVVWRTLL--GACSFHGNVE----MGERVTRKILE 285 (331)
Q Consensus 221 ~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~l~--~~~~~~g~~~----~a~~~~~~~~~ 285 (331)
.|....-..+.-+....|.. .+|...+..+... ++..+-..-+ -+....|..+ ....+.+.+.+
T Consensus 625 d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D-~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~ 695 (963)
T 4ady_A 625 NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD-PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLS 695 (963)
T ss_dssp CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC-CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHH
Confidence 45555555555555555554 6788888888766 4443332222 2334444333 35555555554
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.51 Score=39.84 Aligned_cols=191 Identities=10% Similarity=0.003 Sum_probs=112.5
Q ss_pred cCChhHHHHHHHHHHhc----cCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHH----Hh
Q 048799 61 MNRSNGALALFRRMVAC----EYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTY----AK 132 (331)
Q Consensus 61 ~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~ 132 (331)
.|+++.|++.+..+.+. ............++..|...++++...+.+.-+.+..... ......+++.+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhc
Confidence 47788888887666332 2233445677788888889999988877776665543332 22223333332 22
Q ss_pred cCCHhH--HHHHHHHhhhcCC---c-----HHHHHHHHHHHHccCChHHHHHHHHHHHhc--cCCCC---HHHHHHHHHH
Q 048799 133 CGCIFS--ALKLFEDISVERK---N-----LVSWTSIISGFAMHGMGKEAVENFERMQKV--VLKPN---RVTFLSVLNA 197 (331)
Q Consensus 133 ~g~~~~--A~~~~~~~~~~~~---~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~l~~~ 197 (331)
....+. -..+.+....... . ......|...+...|++.+|.+++..+... |..+. ...+...++.
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 332222 2222222211111 1 122345677788888888888888887643 22222 2345666777
Q ss_pred HhccCChHHHHHHHHHHHHhc---CCCCc--HhhHHHHHHHHHhcCCHHHHHHHHhhcccC
Q 048799 198 CSHGGLVEEGLKFFDKMVEEC---EVLPD--IKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253 (331)
Q Consensus 198 ~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 253 (331)
|...+++..|..++.++.... ..+|+ ...+...+..+...+++.+|.+.|.++...
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 888888888888888764321 11222 234556666777788888888877776654
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.76 E-value=0.48 Score=39.18 Aligned_cols=71 Identities=14% Similarity=0.323 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCChHHHHHHHHHHHh-----ccCCCCHHHHH
Q 048799 122 VSNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFERMQK-----VVLKPNRVTFL 192 (331)
Q Consensus 122 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~ 192 (331)
+...++..+...|++++|...+..+....| +...|..+|.++...|+..+|++.|+++.. .|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 344566777778888888887777766655 666788888888888888888888877543 47777766543
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.39 Score=43.23 Aligned_cols=128 Identities=12% Similarity=0.028 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhcCC-HhHHHHHHHHhhhcCCcHHHHH--HHHHHHHccC-ChHHHHHHHHHHHhc------cCCCC-H--
Q 048799 122 VSNCLIDTYAKCGC-IFSALKLFEDISVERKNLVSWT--SIISGFAMHG-MGKEAVENFERMQKV------VLKPN-R-- 188 (331)
Q Consensus 122 ~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~--~l~~~~~~~~-~~~~a~~~~~~m~~~------~~~p~-~-- 188 (331)
....|+..+...|+ ++.|..+|+++....|....+- .++..+...+ +--+|++++.+..+. ...+. .
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34455666666666 5889999999887777544332 3333333333 233566666554421 11111 1
Q ss_pred --------HHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcc
Q 048799 189 --------VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIP 251 (331)
Q Consensus 189 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 251 (331)
.....=...+...|+++-|+.+-++.... .+.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11122233456789999999999998863 34468899999999999999999999998885
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.59 E-value=0.16 Score=34.33 Aligned_cols=71 Identities=13% Similarity=-0.069 Sum_probs=42.5
Q ss_pred CCchHHHHHHHHHHhhcCc---hhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc
Q 048799 81 EPSEITILAVFPAIWQNGD---VRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKN 152 (331)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 152 (331)
.|+..+-.....+++++.+ ..+++.+++.+.+.++.. ....+..|.-++.+.|++++|.+..+.+....|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~-~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 4555555555555555543 345666666666655432 3344445666777777777777777777666553
No 248
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.52 E-value=0.33 Score=32.93 Aligned_cols=69 Identities=9% Similarity=0.003 Sum_probs=52.7
Q ss_pred CcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCC
Q 048799 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVL 221 (331)
Q Consensus 151 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 221 (331)
.+....+..+..+...|+-++-.+++..+.. +.+|++.....+..+|.+.|+..+|.+++.++-+. |++
T Consensus 89 ~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~k 157 (172)
T 1wy6_A 89 TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GEK 157 (172)
T ss_dssp CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hhH
Confidence 4445566677778888888888888888543 35677888888888899999999998888888877 654
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.24 E-value=1.2 Score=37.61 Aligned_cols=187 Identities=10% Similarity=-0.009 Sum_probs=115.9
Q ss_pred CCHHHHHHHHhhCC-----C----CCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHH--HHHHHHHhhcCc
Q 048799 31 GELEYARSLFEEMP-----C----RNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITI--LAVFPAIWQNGD 99 (331)
Q Consensus 31 g~~~~A~~~~~~~~-----~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~ 99 (331)
|+++.|++.+-.+. . ........++..|...|+++...+.+.-+....|..+...+. ..++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 67777777665443 1 123456778888999999999888887775555543333221 122222222332
Q ss_pred hhH--HHHHHhhhh--hcCCC---cchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc--C--C---cHHHHHHHHHHHHc
Q 048799 100 VRN--CQLIHGYGE--KRGFN---AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE--R--K---NLVSWTSIISGFAM 165 (331)
Q Consensus 100 ~~~--a~~~~~~~~--~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~--~---~~~~~~~l~~~~~~ 165 (331)
.+. -..+.+... ..|.. .........|...+...|++.+|..++..+... . . -...+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 222 222222221 11111 102344567889999999999999999988543 1 1 23567777888999
Q ss_pred cCChHHHHHHHHHHHhc--cCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 048799 166 HGMGKEAVENFERMQKV--VLKPNR----VTFLSVLNACSHGGLVEEGLKFFDKMVEE 217 (331)
Q Consensus 166 ~~~~~~a~~~~~~m~~~--~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 217 (331)
.+++..|..+++++... ...++. ..+...+..+...+++.+|.+.|.++.+.
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99999999999887431 122222 34566677777889999998888887664
No 250
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.02 E-value=0.52 Score=32.29 Aligned_cols=70 Identities=11% Similarity=-0.088 Sum_probs=38.1
Q ss_pred CCchHHHHHHHHHHhhcCc---hhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 048799 81 EPSEITILAVFPAIWQNGD---VRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERK 151 (331)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 151 (331)
.|+..+-.....+++++.+ ..+++.+++.+...++.. .......|.-++.+.|++++|.+..+.+.+..|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~-~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc-hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 4555555555555555443 345555666665544332 333333455666666666666666666665555
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.93 E-value=1.3 Score=36.48 Aligned_cols=284 Identities=9% Similarity=-0.040 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhCCC--------CCchhHHHHHHHHHhc-CChhHHHHHHHHHHhccCCCCchHHH-
Q 048799 18 VTWNVMITGLVKWGELEYARSLFEEMPC--------RNVVSWTGIIDGYTRM-NRSNGALALFRRMVACEYTEPSEITI- 87 (331)
Q Consensus 18 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~- 87 (331)
.+...|...|.+.|+.++...++..... .....-..|+..+... +..+.-.++..+...... -+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~--~~~r~fl 97 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK--QEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH--HTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 4556788889999999999998888763 1233456677766553 333444444444422111 111233
Q ss_pred -----HHHHHHHhhcCchhHHHHHHhhhhhcCCC----cchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc----CCcHH
Q 048799 88 -----LAVFPAIWQNGDVRNCQLIHGYGEKRGFN----AFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE----RKNLV 154 (331)
Q Consensus 88 -----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~ 154 (331)
..++..|...|++.+|..++.++.+.-.. ..-..++..-+..|...|++.++...+...... .+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 14677778888888887777776653111 112345555567777788888888877766443 12222
Q ss_pred HHHH----HHHHHH-ccCChHHHHHHHHHHHhccCC---CC---HHHHHHHHHHHhccCChHHHHHHHH-HHHHhcCCCC
Q 048799 155 SWTS----IISGFA-MHGMGKEAVENFERMQKVVLK---PN---RVTFLSVLNACSHGGLVEEGLKFFD-KMVEECEVLP 222 (331)
Q Consensus 155 ~~~~----l~~~~~-~~~~~~~a~~~~~~m~~~~~~---p~---~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~ 222 (331)
.... -.-.+. ..++|..|...|-+....=.. |. ...|..|... -.++..+...++. .....+ ..|
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL--l~~~r~el~~~l~~~~~~~~-~~p 254 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI--MLGQSDDVNQLVSGKLAITY-SGR 254 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH--HTTCGGGHHHHHHSHHHHTT-CSH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH--HcCCHHHHHHHhcccccccc-CCc
Confidence 2111 122344 677888887777655321101 11 1123222221 2233333333332 211211 234
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHH------hhcCCCccHH
Q 048799 223 DIKHYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILE------MERGYGGDYV 295 (331)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~~~ 295 (331)
....+..++.+| ..+++.+...++...... ..|+..... ...+++.+.+ ..|-....+.
T Consensus 255 ei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h-------------~~~L~~~Ir~~~L~~i~~pYsrIsl~ 320 (394)
T 3txn_A 255 DIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAH-------------LGTLYDTMLEQNLCRIIEPYSRVQVA 320 (394)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHH-------------HHHHHHHHHHHHHHHHHTTCSEEEHH
T ss_pred cHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHH-------------HHHHHHHHHHHHHHHHhHhhceeeHH
Confidence 555555555544 456776666666655433 223322111 1122222222 2354445556
Q ss_pred HHHHHHhhhccCcchHHHHHHHhhccc
Q 048799 296 LMYNILAGVWRYGDAERLRRVVDERNA 322 (331)
Q Consensus 296 ~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (331)
.++..+.- ..++++..+-+|...|.
T Consensus 321 ~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 321 HVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 66665543 56788888888877654
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.93 E-value=0.098 Score=43.30 Aligned_cols=60 Identities=12% Similarity=0.065 Sum_probs=39.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcccC-CccHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 226 HYGCLIDMLGRAGRLEQAEKVASGIPSE-ITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 226 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
....++..+...|++++|...+..+... +-+...|..++.++...|+..+|.+.|+.+.+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445556666677777777666666554 33556677777777777777777777776655
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.65 E-value=2.2 Score=34.10 Aligned_cols=170 Identities=12% Similarity=0.047 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHH----HHHHhccCCCCHHHHHHHHH
Q 048799 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF----ERMQKVVLKPNRVTFLSVLN 196 (331)
Q Consensus 121 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~l~~ 196 (331)
..+.++..=|.+.+++++|.+++..-. ..+.+.|+...+-++- +-..+.++++|..+...++.
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA-------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVS-------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHH-------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344556666788888888888765432 1233344444433332 44445666777777766766
Q ss_pred HHhccCChH-HHHHHHHHHHH---hcC--CCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcC
Q 048799 197 ACSHGGLVE-EGLKFFDKMVE---ECE--VLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFH 270 (331)
Q Consensus 197 ~~~~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~ 270 (331)
.+.....-+ .=.++.+++++ ..| ..-|+.....+...|.+.+++.+|+..|-. ...+.+..+..++.-+...
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il--g~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL--GTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT--SCTTHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh--cCCchHHHHHHHHHHHHHh
Confidence 665544321 11223333322 113 223778888899999999999999998843 2223446665555554444
Q ss_pred CchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhh
Q 048799 271 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDE 319 (331)
Q Consensus 271 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 319 (331)
+...++--++-+ .+.-|...++...|..+++.+.+
T Consensus 181 ~~~~e~dlfiaR--------------aVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 181 DESHTAPLYCAR--------------AVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp SCGGGHHHHHHH--------------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHH--------------HHHHHHHhCCHHHHHHHHHHHHH
Confidence 332222111111 22234445666667666655544
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.32 E-value=0.95 Score=28.80 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=53.4
Q ss_pred HHHccC-ChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHH
Q 048799 162 GFAMHG-MGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDM 233 (331)
Q Consensus 162 ~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 233 (331)
.+.+.. +.-+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+-++.+.+. ...+|..+++-
T Consensus 18 ~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lqE 88 (109)
T 1v54_E 18 YFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQE 88 (109)
T ss_dssp HHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHHH
T ss_pred HcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHHH
Confidence 333444 55677777888888888999999999999999999999999999998876333 34567766654
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.18 E-value=1.4 Score=30.23 Aligned_cols=63 Identities=14% Similarity=0.014 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHhcCCH---hHHHHHHHHhhhcCC-cH-HHHHHHHHHHHccCChHHHHHHHHHHHh
Q 048799 119 HIHVSNCLIDTYAKCGCI---FSALKLFEDISVERK-NL-VSWTSIISGFAMHGMGKEAVENFERMQK 181 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~-~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 181 (331)
+..+...+..+++++... .+++.+++.+....| .. ...-.+.-++.+.|++++|.+..+.+++
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 334444444555544432 234444444443333 11 2222333345555555555555555544
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.11 E-value=2.7 Score=35.19 Aligned_cols=96 Identities=14% Similarity=-0.072 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhhc----CCcHHHHHHHHHHHHccCChHHHHHHHHHHHhc---cCCCCHHH--HH
Q 048799 122 VSNCLIDTYAKCGCIFSALKLFEDISVE----RKNLVSWTSIISGFAMHGMGKEAVENFERMQKV---VLKPNRVT--FL 192 (331)
Q Consensus 122 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~--~~ 192 (331)
+...++..|.+.|+++.|.+.|.++... +.-...+..++..+...+++..+...+.++... +..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5567889999999999999999988755 223566778888888899999999988887542 22233221 11
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHh
Q 048799 193 SVLNACSHGGLVEEGLKFFDKMVEE 217 (331)
Q Consensus 193 ~l~~~~~~~~~~~~a~~~~~~~~~~ 217 (331)
.-+..+...+++..|-..|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122345678899988888877665
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.70 E-value=3.1 Score=33.02 Aligned_cols=134 Identities=11% Similarity=0.044 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHH----HHHHHhccCCCCHHHHHHHHH
Q 048799 121 HVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN----FERMQKVVLKPNRVTFLSVLN 196 (331)
Q Consensus 121 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~l~~ 196 (331)
..|.++..=|.+.+++++|.+++..-. ..+.+.|+...|-++ ++-..+.+.+++......++.
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga-------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGA-------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH-------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344566666777888888888765432 223344555544443 344445667777777777777
Q ss_pred HHhccCChH-HHHHHHHHHHHh---cCC--CCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhc
Q 048799 197 ACSHGGLVE-EGLKFFDKMVEE---CEV--LPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSF 269 (331)
Q Consensus 197 ~~~~~~~~~-~a~~~~~~~~~~---~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~ 269 (331)
.+.....-+ .=.++++++++- .|- .-++.....+...|.+.|++.+|+..|-..... +...+..++.-+..
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~--s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHD--SMIKYVDLLWDWLC 177 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHH--HHHHHHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCc--cHHHHHHHHHHHHH
Confidence 665533211 123444444421 121 237788889999999999999999887643321 44555555544443
No 258
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.83 E-value=2 Score=28.99 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=52.9
Q ss_pred HHccC-ChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHH
Q 048799 163 FAMHG-MGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDM 233 (331)
Q Consensus 163 ~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 233 (331)
+.+.. |.-+..+-++.+....+.|++......+.+|.+.+++.-|.++|+-++.+.+ +...+|..+++-
T Consensus 62 F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lqE 131 (152)
T 2y69_E 62 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE 131 (152)
T ss_dssp HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHHH
Confidence 33444 4556777777777888899999999999999999999999999999987633 345567776654
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.04 E-value=4.3 Score=31.26 Aligned_cols=120 Identities=14% Similarity=0.111 Sum_probs=65.8
Q ss_pred HHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHh----hHHHHHHHHHhc
Q 048799 162 GFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIK----HYGCLIDMLGRA 237 (331)
Q Consensus 162 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~ 237 (331)
...+.|+.+++++....-++.. +-|...-..++..+|-.|+++.|.+-++...+. .|+.. .|..+|.+-..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~aE~~- 80 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQA- 80 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHH-
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHHHHH-
Confidence 3456677777777776665543 345666666777777777777777777776654 34332 33333322111
Q ss_pred CCHHHHHHHHhhcccC---CccHHHHHHHHHHH--hcCCchhHHHHHHHHHHHhhcCCC
Q 048799 238 GRLEQAEKVASGIPSE---ITNVVVWRTLLGAC--SFHGNVEMGERVTRKILEMERGYG 291 (331)
Q Consensus 238 g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~ 291 (331)
. .++|..-..- .....-...++.+. ...|+.++|.++-..+.+..|..+
T Consensus 81 ---R--~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 81 ---R--KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp ---H--HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred ---H--HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 0 1122211111 11222334444443 345888888888888887666543
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.58 E-value=4.8 Score=31.01 Aligned_cols=113 Identities=8% Similarity=-0.054 Sum_probs=72.7
Q ss_pred HHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcH----HHHHHHHHHHHccCC
Q 048799 93 AIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNL----VSWTSIISGFAMHGM 168 (331)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~ 168 (331)
...+.|+++++++....-++..+. |......|+..+|-.|++++|.+-++...+..|+. ..|..+|.+-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~--da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE----- 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK--DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA----- 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-----
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH-----
Confidence 456778888888888888887554 77888888999999999999998888877666543 3455554431
Q ss_pred hHHHHHHHHHHHhccCCC-----CHHHHHHHHHHHh--ccCChHHHHHHHHHHHHh
Q 048799 169 GKEAVENFERMQKVVLKP-----NRVTFLSVLNACS--HGGLVEEGLKFFDKMVEE 217 (331)
Q Consensus 169 ~~~a~~~~~~m~~~~~~p-----~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 217 (331)
..=.+....+-.| ...-...++.+.. ..|+.++|.++-..+.+.
T Consensus 79 -----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 -----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1112222222222 2223344444433 458888888888887664
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.51 E-value=2.8 Score=28.27 Aligned_cols=13 Identities=15% Similarity=0.348 Sum_probs=4.7
Q ss_pred hcCCHHHHHHHHh
Q 048799 236 RAGRLEQAEKVAS 248 (331)
Q Consensus 236 ~~g~~~~A~~~~~ 248 (331)
+.|++++|.+..+
T Consensus 90 klgdY~~Ar~y~d 102 (134)
T 3o48_A 90 KLGEYSMAKRYVD 102 (134)
T ss_dssp HHTCHHHHHHHHH
T ss_pred HhhhHHHHHHHHH
Confidence 3333333333333
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.19 E-value=2.9 Score=26.51 Aligned_cols=51 Identities=12% Similarity=-0.007 Sum_probs=27.3
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcC
Q 048799 57 GYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG 114 (331)
Q Consensus 57 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (331)
.+...|+|++|..+.+.. .-||...|..+-. .+.|--+++...+.++...|
T Consensus 49 SLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKL-----AYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTS-----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 355666666666655554 3556555544433 24555555555555555444
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.16 E-value=2.7 Score=26.65 Aligned_cols=50 Identities=16% Similarity=0.037 Sum_probs=24.7
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcC
Q 048799 58 YTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRG 114 (331)
Q Consensus 58 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (331)
+...|+|++|..+.+.. .-||...|..+-. .+.|--+++...+.++...|
T Consensus 49 LmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGN-----PWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTC-----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 45555565555554443 3455555544332 24555555555554444444
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.26 E-value=10 Score=31.76 Aligned_cols=98 Identities=11% Similarity=-0.078 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCc-chhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc---CCcHHHHHH--
Q 048799 85 ITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNA-FHIHVSNCLIDTYAKCGCIFSALKLFEDISVE---RKNLVSWTS-- 158 (331)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~-- 158 (331)
.+...+...+.+.|+++.|.+.+.++...-..+ .-...+-.+++.+...+++..+...+.++... .++....+.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 366778899999999999999999988743221 14567778899999999999999999988644 233222211
Q ss_pred --HHHHHHccCChHHHHHHHHHHHhc
Q 048799 159 --IISGFAMHGMGKEAVENFERMQKV 182 (331)
Q Consensus 159 --l~~~~~~~~~~~~a~~~~~~m~~~ 182 (331)
-+..+...+++..|.+.|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 122344678999999988876543
No 265
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=88.09 E-value=6 Score=28.71 Aligned_cols=108 Identities=14% Similarity=0.013 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNAC 198 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 198 (331)
+..+....+.++.+.|+.+....+. .+. ..++...-...+.++.+.++. ++...+..+.. .++...-...+.++
T Consensus 89 ~~~vr~~a~~aL~~~~~~~~~~~L~-~~l-~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL 162 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDERAVEPLI-KAL-KDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADAL 162 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHH-HHT-TCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHH-HHH-cCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 4444445555555555543222222 222 233433333444444444443 23333333332 24555555555555
Q ss_pred hccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhc
Q 048799 199 SHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRA 237 (331)
Q Consensus 199 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (331)
...|. +.+...+..+.+. ++..+-...+.++.+.
T Consensus 163 ~~~~~-~~~~~~L~~~l~d----~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 163 GEIGG-ERVRAAMEKLAET----GTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHCS-HHHHHHHHHHHHH----CCHHHHHHHHHHHHHC
T ss_pred HHhCc-hhHHHHHHHHHhC----CCHHHHHHHHHHHHHH
Confidence 55554 3444555555443 3444444445554443
No 266
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.08 E-value=3.6 Score=26.21 Aligned_cols=62 Identities=8% Similarity=0.034 Sum_probs=40.1
Q ss_pred chhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC-CcHHHHHHHHH
Q 048799 99 DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVER-KNLVSWTSIIS 161 (331)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~ 161 (331)
|.-+..+-++.+......| ++.+..+.+++|.+.+++.-|.++|+.++... .....|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP-~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVP-EPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 3345555666666666677 77777777777777777877877777776542 33334555543
No 267
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=87.33 E-value=6.9 Score=28.62 Aligned_cols=25 Identities=0% Similarity=-0.012 Sum_probs=11.8
Q ss_pred HHhhCCCCCchhHHHHHHHHHhcCC
Q 048799 39 LFEEMPCRNVVSWTGIIDGYTRMNR 63 (331)
Q Consensus 39 ~~~~~~~~~~~~~~~l~~~~~~~~~ 63 (331)
+.+.+..++...-...+..+.+.|.
T Consensus 24 L~~~L~~~~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 24 YIKNLQDDSYYVRRAAAYALGKIGD 48 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 3333444454444444555555554
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.65 E-value=11 Score=30.21 Aligned_cols=141 Identities=8% Similarity=-0.059 Sum_probs=70.4
Q ss_pred HHHhcCChhHHHHHH----HHHHhccCCCCchHHHHHHHHHHhhcCchh-HHHHHHh----hhhhcC--CCcchhHHHHH
Q 048799 57 GYTRMNRSNGALALF----RRMVACEYTEPSEITILAVFPAIWQNGDVR-NCQLIHG----YGEKRG--FNAFHIHVSNC 125 (331)
Q Consensus 57 ~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~----~~~~~~--~~~~~~~~~~~ 125 (331)
.+.+.|+...|-++- +.. ...++++|......++..+.....-+ .=..+.+ +-.+.| ..- ++.....
T Consensus 64 ~ll~~~Q~~sg~DL~~llvevy-~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~G-dp~LH~~ 141 (336)
T 3lpz_A 64 TLLRSGQGGSGGDLAVLLVDTF-RQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAG-DPELHHV 141 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-HHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTC-CHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCC-CHHHHHH
Confidence 355666665554443 333 45567777777777777665544321 1112222 222222 122 5666667
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChH
Q 048799 126 LIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVE 205 (331)
Q Consensus 126 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 205 (331)
+...|.+.+++.+|+..|- ....+++..|..++.-+...+... .++...-..++ .|...++..
T Consensus 142 ig~~~~~e~~~~~Ae~H~i--lg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~ 204 (336)
T 3lpz_A 142 VGTLYVEEGEFEAAEKHLV--LGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVL-PYLLVANVR 204 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHT--TSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHH-HHHHTTCHH
T ss_pred HHHHHHccCCHHHHHHHHH--hcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHH-HHHHhCCHH
Confidence 7777777777777777662 222333345544443332222211 11222222222 344567777
Q ss_pred HHHHHHHHHHH
Q 048799 206 EGLKFFDKMVE 216 (331)
Q Consensus 206 ~a~~~~~~~~~ 216 (331)
.|..+++...+
T Consensus 205 ~A~~~~~~f~~ 215 (336)
T 3lpz_A 205 AANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77776666554
No 269
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.93 E-value=13 Score=29.49 Aligned_cols=170 Identities=9% Similarity=0.025 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChhHHHHH----HHHHHhccCCCCchHHHHHHHHHH
Q 048799 19 TWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALAL----FRRMVACEYTEPSEITILAVFPAI 94 (331)
Q Consensus 19 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~l~~~~ 94 (331)
.|.++..-|.+.+++++|++++.. -...+.+.|+...|-++ ++.. ...+.+++......++..+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~-~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVY-DLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHH
Confidence 344444445555555555555432 12234556776665553 3333 4556777777777777666
Q ss_pred hhcCch-----hHHHHHHhhhhhcCC-CcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHcc--
Q 048799 95 WQNGDV-----RNCQLIHGYGEKRGF-NAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMH-- 166 (331)
Q Consensus 95 ~~~~~~-----~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 166 (331)
.....- .-..+...+..+.|. ..-++..+..+...|.+.|++.+|+..|-.- ...+...+..++.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~--~~~s~~~~a~~l~~w~~~~~ 180 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG--THDSMIKYVDLLWDWLCQVD 180 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC--CCccHHHHHHHHHHHHHhcC
Confidence 543211 112222333333322 1126677888888888888888888877521 112344444444333322
Q ss_pred -CChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 048799 167 -GMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE 217 (331)
Q Consensus 167 -~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 217 (331)
|...++ +...-..++ .|.-.|+...|..+++...+.
T Consensus 181 ~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 181 DIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 222221 111112222 345678888888888877654
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.78 E-value=7.2 Score=26.42 Aligned_cols=60 Identities=7% Similarity=0.006 Sum_probs=39.1
Q ss_pred hHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc-CCcHHHHHHHHH
Q 048799 101 RNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIIS 161 (331)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~ 161 (331)
-+..+-++.+......| ++.+..+.++++.+.+++.-|.++|+.++.+ .+....|..++.
T Consensus 70 wElrrglN~l~~~DlVP-eP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVP-EPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 34455556666666677 7777777777777778888888877777655 233444555543
No 271
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=83.49 E-value=11 Score=27.51 Aligned_cols=160 Identities=12% Similarity=0.052 Sum_probs=87.2
Q ss_pred hhhcCCchHHHHHHHHHHHHHcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHH
Q 048799 9 FDELPERNLVTWNVMITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITIL 88 (331)
Q Consensus 9 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 88 (331)
.+.+..++...-...+..+++.|..+....+.+.+..++...-...+.++...++.+ +...+.++.. .++...-.
T Consensus 25 ~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----~~~~~vr~ 99 (211)
T 3ltm_A 25 IKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK----DEDGWVRQ 99 (211)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc----CCCHHHHH
Confidence 333446777777777888888887555556666666777766666777777777643 3444444422 35556666
Q ss_pred HHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCC
Q 048799 89 AVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM 168 (331)
Q Consensus 89 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 168 (331)
..+.++...++.+ +...+..+.+ .+ +..+....+.++...|..+ +...+..+. ..++...-...+.++.+.+.
T Consensus 100 ~a~~aL~~~~~~~-~~~~L~~~l~---d~-~~~vr~~a~~aL~~~~~~~-~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 100 SAAVALGQIGDER-AVEPLIKALK---DE-DWFVRIAAAFALGEIGDER-AVEPLIKAL-KDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHHHCCGG-GHHHHHHHTT---CS-SHHHHHHHHHHHHHHCCGG-GHHHHHHHT-TCSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhCcHH-HHHHHHHHHh---CC-CHHHHHHHHHHHHHcCCHH-HHHHHHHHH-cCCCHHHHHHHHHHHHHhCc
Confidence 6666666666543 3333333332 22 4455555666666666543 333333333 23444444444455555444
Q ss_pred hHHHHHHHHHHHh
Q 048799 169 GKEAVENFERMQK 181 (331)
Q Consensus 169 ~~~a~~~~~~m~~ 181 (331)
.++...+..+.+
T Consensus 173 -~~~~~~L~~~l~ 184 (211)
T 3ltm_A 173 -ERVRAAMEKLAE 184 (211)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHh
Confidence 344444444443
No 272
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.71 E-value=19 Score=29.69 Aligned_cols=168 Identities=8% Similarity=-0.038 Sum_probs=93.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCch---HHHHHHHHHHhhc-CchhHHHHH----HhhhhhcCCCcchhH
Q 048799 50 SWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSE---ITILAVFPAIWQN-GDVRNCQLI----HGYGEKRGFNAFHIH 121 (331)
Q Consensus 50 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~-~~~~~a~~~----~~~~~~~~~~~~~~~ 121 (331)
+...|...|.+.|+.++..+++.....--+.-|-. .....++..+... +..+.-.++ +++.......-....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888888888877777762222222222 2455666666543 233333333 333333321110222
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhhc--C---C--cHHHHHHHHHHHHccCChHHHHHHHHHHHhc--cCCCCHHHHH
Q 048799 122 VSNCLIDTYAKCGCIFSALKLFEDISVE--R---K--NLVSWTSIISGFAMHGMGKEAVENFERMQKV--VLKPNRVTFL 192 (331)
Q Consensus 122 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~ 192 (331)
+-..|+..|...|++.+|.+++.++... . + -...|..-+..|...+++.++...+...... .+.+++....
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 3346778888888888887777777654 1 1 1234556666777788888888877766542 2323333222
Q ss_pred H----HHHHHh-ccCChHHHHHHHHHHHHh
Q 048799 193 S----VLNACS-HGGLVEEGLKFFDKMVEE 217 (331)
Q Consensus 193 ~----l~~~~~-~~~~~~~a~~~~~~~~~~ 217 (331)
. -...+. ..+++..|...|-+..+.
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 1 112244 677888887777666543
No 273
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=82.36 E-value=12 Score=27.07 Aligned_cols=17 Identities=29% Similarity=0.194 Sum_probs=7.5
Q ss_pred cHhhHHHHHHHHHhcCC
Q 048799 223 DIKHYGCLIDMLGRAGR 239 (331)
Q Consensus 223 ~~~~~~~l~~~~~~~g~ 239 (331)
+..+-...+.++.+.|.
T Consensus 151 ~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 151 DGWVRQSAADALGEIGG 167 (201)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 34444444444444444
No 274
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=81.58 E-value=13 Score=27.00 Aligned_cols=69 Identities=19% Similarity=0.162 Sum_probs=41.4
Q ss_pred HHHHHHHHhhcccCCccH-HHHHHH-----HHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhhhccCc
Q 048799 240 LEQAEKVASGIPSEITNV-VVWRTL-----LGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVWRYG 308 (331)
Q Consensus 240 ~~~A~~~~~~~~~~~p~~-~~~~~l-----~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 308 (331)
++.|+.+|+.+....+.. .....| +..|.+.|.+++|.+++++.....+.+...-..|.....+.....
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H 168 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFH 168 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCc
Confidence 577888888887763321 222222 456889999999999999987766666555555555555444333
No 275
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=81.35 E-value=23 Score=33.24 Aligned_cols=129 Identities=9% Similarity=0.000 Sum_probs=76.4
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhH
Q 048799 23 MITGLVKWGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRN 102 (331)
Q Consensus 23 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 102 (331)
++..|...|.++-|.++...++. ++..--.+..+|...|++++|...|+++ . .|+..+..... ....
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kA-A-~gl~~~~~~~~----------~~~~ 882 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT-S-LVLYSHTSQFA----------VLRE 882 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTC-C-CTTCSSCCSCG----------GGHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH-h-hhcccCccccc----------chhh
Confidence 56677778888888887777765 3333345777888888999998888876 3 33322211000 0001
Q ss_pred HHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc-C---C--cHHHHHHHHHHHHccC
Q 048799 103 CQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE-R---K--NLVSWTSIISGFAMHG 167 (331)
Q Consensus 103 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---~--~~~~~~~l~~~~~~~~ 167 (331)
...++.... ........|..++..+-+.+-++-+..+-+.+.+. . + ....|+.+..+.+..|
T Consensus 883 ~~~ll~~~e---~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 883 FQEIAEKYH---HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHTT---TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhccCccc---ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 111111111 11113457888999999999999988888777654 1 2 1235777777665443
No 276
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.72 E-value=28 Score=29.85 Aligned_cols=65 Identities=6% Similarity=-0.075 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCch--HHH-HHHHHHHhhcCchhHHHHHHhhhhhc
Q 048799 49 VSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSE--ITI-LAVFPAIWQNGDVRNCQLIHGYGEKR 113 (331)
Q Consensus 49 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 113 (331)
..+|.+++.|...+.++.|..+..+..--....++. .+| .-+.+.+.-.+++.+|.+.+..+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 356666666666666666666666651100001111 122 22445555666666666666665544
No 277
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.40 E-value=19 Score=26.39 Aligned_cols=52 Identities=10% Similarity=0.020 Sum_probs=35.3
Q ss_pred CchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 048799 98 GDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE 149 (331)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 149 (331)
+.......+|..|...|+...-...|......+...|++.+|.++|+.-.+.
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3355777777777777666545566667777777777777777777766554
No 278
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=75.94 E-value=17 Score=25.22 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCC--hHHHHHHHHHHHhccCCCCHH
Q 048799 123 SNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGM--GKEAVENFERMQKVVLKPNRV 189 (331)
Q Consensus 123 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~ 189 (331)
...++.-|...|+.++|...++++....- .......+..++-+.++ .+.+..++..+...|+.+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 45678888888999999999988843211 23344455556655432 456777888887766544433
No 279
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=74.34 E-value=27 Score=26.77 Aligned_cols=122 Identities=11% Similarity=-0.025 Sum_probs=51.8
Q ss_pred CcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHhcCCCCcHhhHHH
Q 048799 151 KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG-LVEEGLKFFDKMVEECEVLPDIKHYGC 229 (331)
Q Consensus 151 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~ 229 (331)
++...-...+.++...++.+ +...+..+.. .++...-...+.++...| ..+.+...+..+.+ .++..+-..
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~----d~~~~vR~~ 211 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ----DKNEEVRIE 211 (280)
T ss_dssp SCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT----CSCHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc----CCCHHHHHH
Confidence 44444444445555555432 3334433333 244444444444444433 12334444433332 245555556
Q ss_pred HHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 230 LIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 230 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
.+.++.+.|+......+...+.. ++ .-...+.++.+.|+ ..+...+..+.+
T Consensus 212 A~~aL~~~~~~~~~~~L~~~l~d--~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~ 262 (280)
T 1oyz_A 212 AIIGLSYRKDKRVLSVLCDELKK--NT--VYDDIIEAAGELGD-KTLLPVLDTMLY 262 (280)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHTS--SS--CCHHHHHHHHHHCC-GGGHHHHHHHHT
T ss_pred HHHHHHHhCCHhhHHHHHHHhcC--cc--HHHHHHHHHHhcCc-hhhhHHHHHHHh
Confidence 66666666654333333333322 22 12233444445555 345555555553
No 280
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=71.88 E-value=20 Score=24.06 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cHHHHHHHHHHHHccCC--hHHHHHHHHHHHhccCCCCHH
Q 048799 123 SNCLIDTYAKCGCIFSALKLFEDISVERK-NLVSWTSIISGFAMHGM--GKEAVENFERMQKVVLKPNRV 189 (331)
Q Consensus 123 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~ 189 (331)
...++.-|...|+.++|...++++....- .......+..++-+.++ .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 45678888888999999999988842211 23344555556655532 456778888887776554443
No 281
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=71.05 E-value=24 Score=24.81 Aligned_cols=27 Identities=7% Similarity=0.153 Sum_probs=11.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHh
Q 048799 191 FLSVLNACSHGGLVEEGLKFFDKMVEE 217 (331)
Q Consensus 191 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 217 (331)
|......+...|++.+|.++|..-++.
T Consensus 99 Y~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 99 YISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 333333344444444444444444443
No 282
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=70.03 E-value=58 Score=28.77 Aligned_cols=115 Identities=9% Similarity=-0.035 Sum_probs=73.1
Q ss_pred CHhHHHHHHHHhhhcC-CcHH----HHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHH
Q 048799 135 CIFSALKLFEDISVER-KNLV----SWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLK 209 (331)
Q Consensus 135 ~~~~A~~~~~~~~~~~-~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 209 (331)
+.+.|...+....... .+.. .+..+...+...+...++...+...... .++.......+....+.|+++.|..
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHH
Confidence 6778888887775331 2222 2333333444455355677777765442 3444444445555567899999999
Q ss_pred HHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC
Q 048799 210 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE 253 (331)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 253 (331)
.|..|... . .....-.--+..++...|+.++|..+|..+...
T Consensus 307 ~~~~l~~~-~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~ 348 (618)
T 1qsa_A 307 WLARLPME-A-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ 348 (618)
T ss_dssp HHHHSCTT-G-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHcccc-c-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 99888643 1 123444455677888899999999999998763
No 283
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=69.37 E-value=19 Score=22.89 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=20.6
Q ss_pred HHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 048799 129 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQK 181 (331)
Q Consensus 129 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 181 (331)
.+...|+|++|..+.+... .||...|.++... +.|..+++..-+.++..
T Consensus 48 SLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce~--rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP--WPALEPWFALCEW--HLGLGAALDRRLAGLGG 96 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC--CGGGHHHHHHHHH--HTTCHHHHHHHHHHHHT
T ss_pred HHHcchhHHHHHHhcCCCC--CchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 3444445555444443331 3444444443322 34444444444444433
No 284
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=68.87 E-value=34 Score=25.82 Aligned_cols=90 Identities=14% Similarity=-0.009 Sum_probs=44.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcc-CCCC----chHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHH
Q 048799 53 GIIDGYTRMNRSNGALALFRRMVACE-YTEP----SEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLI 127 (331)
Q Consensus 53 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 127 (331)
--++.+....++++|.+++++....- +.++ ........+..-.....-.-+..+.+.+.. .. .+......+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~-~~~~~r~~v 98 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SN-EIVHLKSGT 98 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CS-SHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cC-CHHHHHHHH
Confidence 34566777788888888777662211 1111 111112222222222222333333333322 12 334444556
Q ss_pred HHHHhcCCHhHHHHHHHHh
Q 048799 128 DTYAKCGCIFSALKLFEDI 146 (331)
Q Consensus 128 ~~~~~~g~~~~A~~~~~~~ 146 (331)
..+.+.|+-++|..+|-+.
T Consensus 99 ~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHH
Confidence 7777777777777777655
No 285
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=68.15 E-value=32 Score=25.07 Aligned_cols=38 Identities=11% Similarity=0.010 Sum_probs=26.5
Q ss_pred ccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCC
Q 048799 165 MHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGL 203 (331)
Q Consensus 165 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 203 (331)
+..+.+.|+-.+-+|++.| .|....-..++.+....|.
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 4578888888888888888 6666655556655555554
No 286
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=68.14 E-value=20 Score=22.79 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=20.7
Q ss_pred HHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 048799 129 TYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERMQ 180 (331)
Q Consensus 129 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 180 (331)
.+...|+|++|..+.+... .||...|.++... +.|..+++..-+.++.
T Consensus 49 SLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA--YPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC--CGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred HHHcchhHHHHHHhcCCCC--CchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 3444455555554444331 3444444443322 3344444444444443
No 287
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=67.74 E-value=82 Score=29.61 Aligned_cols=86 Identities=3% Similarity=-0.217 Sum_probs=56.9
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccC--Cc----------------
Q 048799 194 VLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSE--IT---------------- 255 (331)
Q Consensus 194 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p---------------- 255 (331)
++..+...|..+-|.++ .. -.+.++..--.++.+|...|++++|..+|+++... .+
T Consensus 816 l~~~L~~~~~~~~a~eL----~~--~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQL----IG--WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHH----GG--GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHH----Hh--hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 45556666666554432 22 33345444456778889999999999999887533 00
Q ss_pred ------cHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 256 ------NVVVWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 256 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
...-|..++..+-+.+-++.+.++.+.+++
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 112566777777788888888888888887
No 288
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.35 E-value=34 Score=25.04 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=43.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhccCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcH
Q 048799 155 SWTSIISGFAMHGMGKEAVENFERMQKVVLKP-NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDI 224 (331)
Q Consensus 155 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 224 (331)
.|-..+..+ ..+...++.++|..|...|+-- -+..|......+...|++++|.++|+.-++. +-.|-.
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P~~ 150 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRPYN 150 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccHH
Confidence 344444433 2344667777887777776533 3455666777777778888888888877776 666643
No 289
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=67.32 E-value=32 Score=25.93 Aligned_cols=88 Identities=17% Similarity=0.021 Sum_probs=41.1
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhhc---CCc-----HHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 048799 126 LIDTYAKCGCIFSALKLFEDISVE---RKN-----LVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNA 197 (331)
Q Consensus 126 l~~~~~~~g~~~~A~~~~~~~~~~---~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 197 (331)
-++.+....++++|..++++.... -++ .......+..-...+.-.-+..+.+.+.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 356666777777777777666433 111 11112222222222222333333333311 3344444445555
Q ss_pred HhccCChHHHHHHHHHHHH
Q 048799 198 CSHGGLVEEGLKFFDKMVE 216 (331)
Q Consensus 198 ~~~~~~~~~a~~~~~~~~~ 216 (331)
+.+.|+.++|.++|=+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 5666666666666655543
No 290
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=65.90 E-value=23 Score=24.88 Aligned_cols=72 Identities=6% Similarity=0.019 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhc--CCCcchhHHHHHHHHHHHhcCCHh
Q 048799 64 SNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKR--GFNAFHIHVSNCLIDTYAKCGCIF 137 (331)
Q Consensus 64 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~ 137 (331)
.+.+++-+.+..+..|.+++.. -..++..+...+..-.|.++++.+.+. ++.. +..+...-++.+...|-+.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~i-s~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNV-GIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCC-CHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHCCCEE
Confidence 3455555555556667766543 344556666666677778888777766 5544 4433334456666666443
No 291
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=63.29 E-value=35 Score=23.69 Aligned_cols=46 Identities=7% Similarity=-0.004 Sum_probs=23.6
Q ss_pred HHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 048799 103 CQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISV 148 (331)
Q Consensus 103 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 148 (331)
...+|..|...|+...-...|......+...|++.+|.++|+.-.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555555554443344445555555555555555555554443
No 292
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.98 E-value=80 Score=27.14 Aligned_cols=183 Identities=10% Similarity=0.032 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC---Cc--HHHHH-HHHHHHHccCChHHHHHHHHHHHhccCCCCH----
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVER---KN--LVSWT-SIISGFAMHGMGKEAVENFERMQKVVLKPNR---- 188 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~--~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---- 188 (331)
-..++|.+++.|...+.++.|..+..+..-.. ++ ...|. .+...+.-.+++.+|.+.|......- +++.
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka-p~~~~a~g 308 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA-PHNSKSLG 308 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC-SCSSSCSH
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-Ccchhhhh
Confidence 46678888899999999999999988874221 11 12333 33456667888999988888776532 2221
Q ss_pred ---HHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHH
Q 048799 189 ---VTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLG 265 (331)
Q Consensus 189 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~ 265 (331)
..+..++-+-.-.|+...- .+|. .++.......|..|.+++ +.|++..-...++.-. .
T Consensus 309 fr~~a~K~lI~V~LLlG~iP~r-~lf~----q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~-------------~ 369 (523)
T 4b4t_S 309 FLQQSNKLHCCIQLLMGDIPEL-SFFH----QSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYK-------------Q 369 (523)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCH-HHHT----TTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTH-------------H
T ss_pred HHHHHHHHHHhHHhhcCCCCCh-HHhh----chhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhc-------------c
Confidence 1111111111113443321 1111 112222233466666665 5677665444443322 2
Q ss_pred HHhcCCchhHHHHHHHHHHH-----hhcCCC-ccHHHHHHHHhhhccCcchHHHHHHHhhccc
Q 048799 266 ACSFHGNVEMGERVTRKILE-----MERGYG-GDYVLMYNILAGVWRYGDAERLRRVVDERNA 322 (331)
Q Consensus 266 ~~~~~g~~~~a~~~~~~~~~-----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 322 (331)
.+.+.|.+.-..++-..+.+ +..... .....++ ........++|+.+...|...|.
T Consensus 370 ~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa-~kL~L~s~eeaE~iVAkmI~dG~ 431 (523)
T 4b4t_S 370 LLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDIC-LKLNLDSEQTVEYMVSRAIRDGV 431 (523)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHH-HHHHHHHSSCHHHHHHHHHHHTS
T ss_pred eeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH-HHhCCCCHHHHHHHHHHHHHcCC
Confidence 23344555544444333333 111111 1112222 22223456789999988888775
No 293
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=59.25 E-value=53 Score=24.49 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhccCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCc
Q 048799 170 KEAVENFERMQKVVLKP-NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPD 223 (331)
Q Consensus 170 ~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 223 (331)
+....+|..|...|+-- -+..|......+...|++.+|..+|+.-++. +-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 45667777777766433 3455666667777778888888888777776 65663
No 294
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=57.18 E-value=55 Score=24.08 Aligned_cols=38 Identities=16% Similarity=0.123 Sum_probs=24.6
Q ss_pred ccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccC
Q 048799 165 MHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202 (331)
Q Consensus 165 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 202 (331)
+..+++.|+-.+-+|++.|-.|....-..++.+....|
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 45677777777788877776666555555555554444
No 295
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=56.06 E-value=56 Score=23.79 Aligned_cols=37 Identities=14% Similarity=-0.051 Sum_probs=21.1
Q ss_pred ccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhcc
Q 048799 165 MHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHG 201 (331)
Q Consensus 165 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 201 (331)
+..+.+.|+-.+-+|++.|-.|....-..++.+....
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDI 55 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDV 55 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence 4456777777777776666555554444444444333
No 296
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=53.40 E-value=86 Score=25.13 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCCCC
Q 048799 20 WNVMITGLVKWGELEYARSLFEEMPCRN 47 (331)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 47 (331)
...++.-|...|+.++|.+.++++..|.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~ 41 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPS 41 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcc
Confidence 4567888888999999999999998664
No 297
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=52.51 E-value=23 Score=22.30 Aligned_cols=37 Identities=16% Similarity=0.120 Sum_probs=23.6
Q ss_pred CCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChhHH
Q 048799 31 GELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67 (331)
Q Consensus 31 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 67 (331)
.+.++|..+++.++.....+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 3566677777777666666777777766655554444
No 298
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=52.02 E-value=76 Score=24.15 Aligned_cols=155 Identities=9% Similarity=-0.077 Sum_probs=84.9
Q ss_pred CCcHHHHHHHHHHHHccCC-----hHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcH
Q 048799 150 RKNLVSWTSIISGFAMHGM-----GKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDI 224 (331)
Q Consensus 150 ~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 224 (331)
.++...-...+.++...+. ...+...+..+.. .++...-...+.++...|+.+ +...+..+.. .++.
T Consensus 102 d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~ 173 (280)
T 1oyz_A 102 DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDKA-TIPLLINLLK----DPNG 173 (280)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT----CSSH
T ss_pred CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc----CCCH
Confidence 3444443444444443331 3345555554443 367666666777777777633 4444544443 3566
Q ss_pred hhHHHHHHHHHhcC-CHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCccHHHHHHHHhh
Q 048799 225 KHYGCLIDMLGRAG-RLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 303 (331)
Q Consensus 225 ~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (331)
.+-...+.++...| ....+...+..+... ++..+-...+.++...|+.. +...+....+ +| ......+.++.+
T Consensus 174 ~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d-~~~~vR~~A~~aL~~~~~~~-~~~~L~~~l~-d~---~vr~~a~~aL~~ 247 (280)
T 1oyz_A 174 DVRNWAAFAININKYDNSDIRDCFVEMLQD-KNEEVRIEAIIGLSYRKDKR-VLSVLCDELK-KN---TVYDDIIEAAGE 247 (280)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHTTCGG-GHHHHHHHHT-SS---SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhCCHh-hHHHHHHHhc-Cc---cHHHHHHHHHHh
Confidence 66666667777665 234555555555444 56666667777787777544 4444444442 22 245566777887
Q ss_pred hccCcchHHHHHHHhh
Q 048799 304 VWRYGDAERLRRVVDE 319 (331)
Q Consensus 304 ~g~~~~a~~~~~~~~~ 319 (331)
.|. ..+...+..+.+
T Consensus 248 i~~-~~~~~~L~~~l~ 262 (280)
T 1oyz_A 248 LGD-KTLLPVLDTMLY 262 (280)
T ss_dssp HCC-GGGHHHHHHHHT
T ss_pred cCc-hhhhHHHHHHHh
Confidence 877 456666665544
No 299
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=50.47 E-value=18 Score=20.32 Aligned_cols=49 Identities=14% Similarity=-0.069 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhccccCCC
Q 048799 277 ERVTRKILEMERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALKFP 326 (331)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 326 (331)
.+.++.+.++-|+- .....-...-...|+.+.|...+-.|...+..|.+
T Consensus 10 ee~l~~L~emFP~l-d~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 10 EEDLKAIQDMFPNM-DQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSS-CHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 34444444445553 22222222224456677777776666655554443
No 300
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=50.21 E-value=77 Score=23.64 Aligned_cols=49 Identities=4% Similarity=-0.049 Sum_probs=26.7
Q ss_pred hHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 048799 101 RNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE 149 (331)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 149 (331)
+....+|..|...|+...-...|......+...|++.+|..+|+.-...
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3455566666555554434445555555555566666666665554433
No 301
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=48.91 E-value=64 Score=22.35 Aligned_cols=52 Identities=8% Similarity=0.116 Sum_probs=36.0
Q ss_pred HHHHHHHHHhccCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcH
Q 048799 172 AVENFERMQKVVLKP-NRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDI 224 (331)
Q Consensus 172 a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 224 (331)
+.++|..|...|+-. -+..|......+...|++++|.++|+.-++. +-.|-.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~~ 136 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEPRE 136 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccHH
Confidence 677777777776533 3455666777777778888888888877776 666643
No 302
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=47.65 E-value=83 Score=23.30 Aligned_cols=69 Identities=6% Similarity=-0.135 Sum_probs=0.0
Q ss_pred hhHHHHHHhhhhhcCCCcchhH-------HHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCCh
Q 048799 100 VRNCQLIHGYGEKRGFNAFHIH-------VSNCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMG 169 (331)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 169 (331)
++.|+.+++.+.+.-..+ +.. +-...+..|.+.|.+++|.+++++.....++..-...-+....+.++.
T Consensus 88 LESAl~v~~~I~~e~~l~-~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLT-EAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc
No 303
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=47.05 E-value=61 Score=22.07 Aligned_cols=60 Identities=10% Similarity=0.022 Sum_probs=33.1
Q ss_pred HHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCH
Q 048799 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240 (331)
Q Consensus 178 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (331)
.+.+.|++++..-. .++..+...+ .-.|.++++.+.+. +...+..|...-++.+.+.|-+
T Consensus 9 ~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~-~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKT-ASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTT-CTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhh-CCCCCHhHHHHHHHHHHHCCcE
Confidence 34456666665432 2333444444 56777777777665 4444555555555566665543
No 304
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=46.31 E-value=92 Score=23.42 Aligned_cols=51 Identities=16% Similarity=0.140 Sum_probs=30.1
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCCCch---hHHHHHHHHHhcCChhHHHHHHH
Q 048799 22 VMITGLVKWGELEYARSLFEEMPCRNVV---SWTGIIDGYTRMNRSNGALALFR 72 (331)
Q Consensus 22 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~ 72 (331)
+.+...++.|+++....+++.-..++.. .-.+.+...+..|+.+-+.-+++
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 60 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 4556667889999888888875543221 11233444556677665544443
No 305
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=46.03 E-value=19 Score=20.22 Aligned_cols=25 Identities=8% Similarity=-0.100 Sum_probs=19.0
Q ss_pred hcCChhHHHHHHHHHHhccCCCCch
Q 048799 60 RMNRSNGALALFRRMVACEYTEPSE 84 (331)
Q Consensus 60 ~~~~~~~a~~~~~~~~~~~~~~~~~ 84 (331)
..-+++.|...|.++...+.+||+.
T Consensus 32 ~~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 32 NNWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred cCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 3568899999999985566677654
No 306
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=45.60 E-value=72 Score=22.03 Aligned_cols=55 Identities=11% Similarity=0.233 Sum_probs=34.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCCCCc---hhHHHHHHHHHhcCC--hhHHHHHHHHH
Q 048799 20 WNVMITGLVKWGELEYARSLFEEMPCRNV---VSWTGIIDGYTRMNR--SNGALALFRRM 74 (331)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~~ 74 (331)
...++.-|...|+.++|.+.++++..|.- .+...+..++-+.++ .+.+..++..+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L 71 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSL 71 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45678888888999999999988876532 123333444444322 34566677776
No 307
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=45.22 E-value=70 Score=21.75 Aligned_cols=58 Identities=9% Similarity=-0.073 Sum_probs=29.3
Q ss_pred hccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCC
Q 048799 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135 (331)
Q Consensus 76 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 135 (331)
+..|.+++..- ..++..+...+..-.|.++++.+.+.++.. +..+...-++.+...|-
T Consensus 14 ~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i-s~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 14 KETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNM-SVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTC-CHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCC-ChhhHHHHHHHHHHCCC
Confidence 44455554432 234444444455556666776666665544 33333344455555553
No 308
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=44.91 E-value=73 Score=21.85 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=35.4
Q ss_pred HHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCH
Q 048799 178 RMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240 (331)
Q Consensus 178 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (331)
.+.+.|.+++..-. .++..+...+..-.|.++++.+.+. +...+..|...-++.+.+.|-+
T Consensus 17 ~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcE
Confidence 34556666655432 3444555556677788888888766 5445555555556666666654
No 309
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=44.72 E-value=72 Score=21.72 Aligned_cols=57 Identities=12% Similarity=-0.054 Sum_probs=30.7
Q ss_pred hccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCC
Q 048799 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGC 135 (331)
Q Consensus 76 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 135 (331)
+..|.+++..- ..++..+...+ .-.|.++++.+.+.++.. +..+...-++.+...|-
T Consensus 11 ~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~i-s~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 11 RQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGI-NISTVYRTLELLEELGL 67 (145)
T ss_dssp HTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTC-CHHHHHHHHHHHHHHTS
T ss_pred HHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCC-CHhHHHHHHHHHHHCCc
Confidence 55566655432 23344444444 556777777777666555 44333344566666554
No 310
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=44.02 E-value=18 Score=22.79 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=29.4
Q ss_pred cchhHHhhhcCCchHHHHHHHHHHHHHcCCHHHHHHH
Q 048799 3 KDGSKLFDELPERNLVTWNVMITGLVKWGELEYARSL 39 (331)
Q Consensus 3 ~~A~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 39 (331)
++|.++++.++.....+|..++.++...|+...|.-+
T Consensus 54 ~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 54 DQARQLIIDLETRGSQALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp HHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHHH
Confidence 5688899988877778899999999877877666543
No 311
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=43.52 E-value=77 Score=21.73 Aligned_cols=63 Identities=10% Similarity=0.130 Sum_probs=40.3
Q ss_pred HHHHhccCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHH
Q 048799 177 ERMQKVVLKPNRVTFLSVLNACSHGG-LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 241 (331)
Q Consensus 177 ~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 241 (331)
+.|.+.|++++..-. .++..+...+ ..-.|.++++.+.+. +...+..|...-++.+.+.|-+.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDL-GEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHCCcEE
Confidence 345567777776543 3455555555 667788888888776 54556666666666777776643
No 312
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=43.09 E-value=84 Score=22.08 Aligned_cols=51 Identities=10% Similarity=0.067 Sum_probs=28.8
Q ss_pred HHHHHHHHhhhcC---CcHHHHHHHHHHHHccCChHHHHHHHHHHHhccCCCCH
Q 048799 138 SALKLFEDISVER---KNLVSWTSIISGFAMHGMGKEAVENFERMQKVVLKPNR 188 (331)
Q Consensus 138 ~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 188 (331)
.+..+|..|...+ .-+..|......+...|++.+|.++|+.-++.+-.|..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 3555566555442 23444555555666666666666666666665555543
No 313
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=42.86 E-value=73 Score=21.32 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=34.4
Q ss_pred HHhccCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCH
Q 048799 179 MQKVVLKPNRVTFLSVLNACSHGG-LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 240 (331)
Q Consensus 179 m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (331)
+.+.|.+++..-. .++..+...+ ..-.|.++++.+.+. +...+..|...-++.+.+.|-+
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEA-GEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHCCcE
Confidence 4556666665433 3444454554 566778888887765 4444555555555566665543
No 314
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=42.52 E-value=78 Score=21.51 Aligned_cols=67 Identities=15% Similarity=0.152 Sum_probs=43.4
Q ss_pred HHHHHHHHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCch
Q 048799 33 LEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDV 100 (331)
Q Consensus 33 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 100 (331)
.+.+.+.+++..-+....-..++..+...+..-.|.++++.+ ...+...+..|....+..+...|-+
T Consensus 6 ~~~~~~~l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l-~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 6 LKEALETLKETGVRITPQRHAILEYLVNSMAHPTADDIYKAL-EGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHH-GGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHH-HHhCCCCChhhHHHHHHHHHHCCCE
Confidence 344555555543333444556667777777788899999998 6566566777776677777666643
No 315
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=40.44 E-value=17 Score=20.42 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHH
Q 048799 171 EAVENFERMQKVVLKPNRVTFLSVLNA 197 (331)
Q Consensus 171 ~a~~~~~~m~~~~~~p~~~~~~~l~~~ 197 (331)
+|.+.|.+|++..-.++.-||...+..
T Consensus 4 Eae~aF~~lL~~~~V~s~wsweqamr~ 30 (59)
T 2b7e_A 4 EAEKEFITMLKENQVDSTWSFSRIISE 30 (59)
T ss_dssp HHHHHHHHHHHHTTCCSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 444444444443322333334433333
No 316
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=40.22 E-value=94 Score=21.78 Aligned_cols=16 Identities=13% Similarity=0.056 Sum_probs=7.6
Q ss_pred CCchhHHHHHHHHHHH
Q 048799 270 HGNVEMGERVTRKILE 285 (331)
Q Consensus 270 ~g~~~~a~~~~~~~~~ 285 (331)
.|+...|..++.++..
T Consensus 88 rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 88 FEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH
Confidence 3444444444444444
No 317
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=39.57 E-value=1.5e+02 Score=23.79 Aligned_cols=26 Identities=8% Similarity=-0.047 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHh
Q 048799 121 HVSNCLIDTYAKCGCIFSALKLFEDI 146 (331)
Q Consensus 121 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 146 (331)
.....++..+.+....+.+.++|.+.
T Consensus 142 ~fl~~vl~~l~~~~g~~~l~~~~~~s 167 (339)
T 1ug3_A 142 SLLLEILGLLCKSMGPKKVGTLWREA 167 (339)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHc
Confidence 44445556666666666666666643
No 318
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=39.08 E-value=84 Score=20.91 Aligned_cols=55 Identities=11% Similarity=0.233 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCCCCc---hhHHHHHHHHHhcCC--hhHHHHHHHHH
Q 048799 20 WNVMITGLVKWGELEYARSLFEEMPCRNV---VSWTGIIDGYTRMNR--SNGALALFRRM 74 (331)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~~ 74 (331)
...++.-|...|+.++|.+.++++..|.- .+...+..++-+.++ .+.+..++..+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L 69 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSL 69 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45678888888999999999988876532 123333344444332 35566777777
No 319
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=38.93 E-value=1.7e+02 Score=24.49 Aligned_cols=14 Identities=29% Similarity=0.202 Sum_probs=7.7
Q ss_pred cCCHhHHHHHHHHh
Q 048799 133 CGCIFSALKLFEDI 146 (331)
Q Consensus 133 ~g~~~~A~~~~~~~ 146 (331)
.|+..+++.+++.+
T Consensus 205 ~Gd~R~lln~Le~a 218 (447)
T 3pvs_A 205 NGDARRALNTLEMM 218 (447)
T ss_dssp CSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 45555555555544
No 320
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=38.90 E-value=61 Score=19.98 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=31.1
Q ss_pred cCCHHHHHHHHhhCCCCCchhHHHHHHHHHhcCChhHH
Q 048799 30 WGELEYARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGA 67 (331)
Q Consensus 30 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 67 (331)
....++|..+++.++..+..+|..++.++...+...-|
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 57788899999999888888999999988887754433
No 321
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=38.24 E-value=1e+02 Score=21.60 Aligned_cols=51 Identities=12% Similarity=-0.032 Sum_probs=28.0
Q ss_pred cCChHHHHHHHHHHHhccCCC--CHHHHHHHHH-H-----HhccCChHHHHHHHHHHHH
Q 048799 166 HGMGKEAVENFERMQKVVLKP--NRVTFLSVLN-A-----CSHGGLVEEGLKFFDKMVE 216 (331)
Q Consensus 166 ~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 216 (331)
.|++=+|-++++..-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 366666666666655443333 3344444554 1 2345666666666666654
No 322
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=37.91 E-value=1.6e+02 Score=23.85 Aligned_cols=195 Identities=10% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCCCC--chhHHHHHHHHHhcCChhH--HHHHHHHHHhccCCCCchHHHHHHHHHHhh
Q 048799 21 NVMITGLVKWGELEYARSLFEEMPCRN--VVSWTGIIDGYTRMNRSNG--ALALFRRMVACEYTEPSEITILAVFPAIWQ 96 (331)
Q Consensus 21 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (331)
..++.-|...|+.++|...++++..|. ......++......++.++ +-.++..+ . .++-+.......+...+..
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L-~-~~~ls~~~i~~gf~~lle~ 135 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDL-C-GTVMSTNDVEKSFDKLLKD 135 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTT-T-TTSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-H-hCCCCHHHHHHHHHHHHHh
Q ss_pred cCc--------hhHHHHHHhhhhhcCCCcc--------------------------------------------------
Q 048799 97 NGD--------VRNCQLIHGYGEKRGFNAF-------------------------------------------------- 118 (331)
Q Consensus 97 ~~~--------~~~a~~~~~~~~~~~~~~~-------------------------------------------------- 118 (331)
..+ ++-.-.++.+++..+..|+
T Consensus 136 ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~~~vee 215 (358)
T 3eiq_C 136 LPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQPVNH 215 (358)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHHHHHHTC---------CCCCCCSSSCHHH
T ss_pred hhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCCccHHH
Q ss_pred hhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc-CCcHHHHHHHHHHHHccC--ChHHHHHHHHHHHhccCCCCHHHHHHHH
Q 048799 119 HIHVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIISGFAMHG--MGKEAVENFERMQKVVLKPNRVTFLSVL 195 (331)
Q Consensus 119 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 195 (331)
-......++.-|...|+.++|.+.++++... -........+..++-+.+ ..+...+++..+...|+.+.......+.
T Consensus 216 lkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 216 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_pred HHHhccCC----hHHHHHHHHHHHHh
Q 048799 196 NACSHGGL----VEEGLKFFDKMVEE 217 (331)
Q Consensus 196 ~~~~~~~~----~~~a~~~~~~~~~~ 217 (331)
..+....+ ...|..++.++...
T Consensus 296 ~vl~~ldDl~lDiP~A~~~la~~var 321 (358)
T 3eiq_C 296 RIYNEIPDINLDVPHSYSVLERFVEE 321 (358)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHhccHhhcccccHHHHHHHHHHH
No 323
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=37.16 E-value=73 Score=23.21 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=10.7
Q ss_pred HHHHhcCCHhHHHHHHHHh
Q 048799 128 DTYAKCGCIFSALKLFEDI 146 (331)
Q Consensus 128 ~~~~~~g~~~~A~~~~~~~ 146 (331)
..|.+.|.+++|.++|++.
T Consensus 125 ~VCiekg~Fk~A~eiLkr~ 143 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERI 143 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHH
Confidence 3455556666666665554
No 324
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=35.74 E-value=1.8e+02 Score=23.66 Aligned_cols=25 Identities=8% Similarity=-0.080 Sum_probs=16.1
Q ss_pred HHHHHHHHhhcCchhHHHHHHhhhh
Q 048799 87 ILAVFPAIWQNGDVRNCQLIHGYGE 111 (331)
Q Consensus 87 ~~~l~~~~~~~~~~~~a~~~~~~~~ 111 (331)
...++.-|...|+.++|.+.++++.
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 4456666666677777776666654
No 325
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=35.73 E-value=89 Score=22.72 Aligned_cols=218 Identities=11% Similarity=-0.033 Sum_probs=0.0
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCCCchhHH--HHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchh
Q 048799 24 ITGLVKWGELEYARSLFEEMPCRNVVSWT--GIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVR 101 (331)
Q Consensus 24 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 101 (331)
+...++.|+++....+++.-..++..... +.+...+..|+.+-+.-+++.- .......+....+.+..++....
T Consensus 13 l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~t~L~~A~~~~~--- 88 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKG-AIVDQLGGDLNSTPLHWATRQGH--- 88 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCBTTTTBCHHHHHHHHTC---
T ss_pred HHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcC-CcchhhcCCcCCChhHHHHHcCC---
Q ss_pred HHHHHHhhhhhcCCCcchhHHHH--HHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCChHHHHHHHHHH
Q 048799 102 NCQLIHGYGEKRGFNAFHIHVSN--CLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFERM 179 (331)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 179 (331)
.++++.+.+.|..+ +..... ..+...+..|+.+-+..+++.-.........-...+...+..+......+++.+.
T Consensus 89 --~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~ 165 (240)
T 3eu9_A 89 --LSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF 165 (240)
T ss_dssp --HHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHT
T ss_pred --HHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhc
Q ss_pred HhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHH--HHHHHHHhcCCHHHHHHHHhhcccC
Q 048799 180 QKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYG--CLIDMLGRAGRLEQAEKVASGIPSE 253 (331)
Q Consensus 180 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~ 253 (331)
...-...+...-.+.+...+..|+.+ +.+.+.+. |..++..... .-+....+.|+.+-+..+++.....
T Consensus 166 ~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 166 NVSVNLGDKYHKNTALHWAVLAGNTT----VISLLLEA-GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHHTCHH----HHHHHHHH-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred CCCcchhhccCCCcHHHHHHHcCCHH----HHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
No 326
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=35.60 E-value=1.1e+02 Score=21.29 Aligned_cols=65 Identities=5% Similarity=-0.009 Sum_probs=42.6
Q ss_pred HHHHHHhhCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHHhcc--CCCCchHHHHHHHHHHhhcCch
Q 048799 35 YARSLFEEMPCRNVVSWTGIIDGYTRMNRSNGALALFRRMVACE--YTEPSEITILAVFPAIWQNGDV 100 (331)
Q Consensus 35 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 100 (331)
.+.+.+++-.-+-...-..++..+...+..-.|.++++.+ ... +...+..|...-+..+...|-+
T Consensus 19 ~~~~~L~~~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l-~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 19 RFKKILRQGGLKYTKQREVLLKTLYHSDTHYTPESLYMEI-KQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHH-HHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHH-HhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3444444433333445566777788888888999999998 544 5556667766667777776644
No 327
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=35.15 E-value=60 Score=21.58 Aligned_cols=9 Identities=11% Similarity=0.405 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 048799 206 EGLKFFDKM 214 (331)
Q Consensus 206 ~a~~~~~~~ 214 (331)
.|.++++.+
T Consensus 28 sa~ei~~~l 36 (131)
T 2o03_A 28 SAQELHDEL 36 (131)
T ss_dssp EHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 333333333
No 328
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=34.69 E-value=51 Score=19.99 Aligned_cols=36 Identities=11% Similarity=-0.003 Sum_probs=24.0
Q ss_pred ChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCc
Q 048799 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGD 99 (331)
Q Consensus 63 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 99 (331)
..++|...|.+|+...++.|+. +|...+...+...+
T Consensus 15 t~eea~~~Fk~LL~e~~V~p~~-tWe~~~~~i~~DpR 50 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSAFS-TWEKELHKIVFDPR 50 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCSSS-CHHHHHHHHHTCSG
T ss_pred CHHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHccCCc
Confidence 3577888899988888876654 56666655544433
No 329
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=34.03 E-value=55 Score=22.12 Aligned_cols=42 Identities=12% Similarity=0.055 Sum_probs=17.6
Q ss_pred HHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCC
Q 048799 197 ACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239 (331)
Q Consensus 197 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 239 (331)
.+...+..-.|.++++.+.+. +...+..|...-++.+.+.|-
T Consensus 22 ~L~~~~~h~sa~eI~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 22 ALQEVEEFRSAQELHDMLKHK-GDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHTTCSSCEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHhCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHCCC
Confidence 333333344445555554443 333333333333444444443
No 330
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=33.25 E-value=1.6e+02 Score=22.52 Aligned_cols=15 Identities=20% Similarity=0.016 Sum_probs=8.9
Q ss_pred hhccCcchHHHHHHH
Q 048799 303 GVWRYGDAERLRRVV 317 (331)
Q Consensus 303 ~~g~~~~a~~~~~~~ 317 (331)
-.++.++|.++-+..
T Consensus 211 Iln~p~~Ac~LAk~A 225 (261)
T 3ubw_A 211 ILNSPDRACRLAKAA 225 (261)
T ss_dssp TSCCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 356666666655544
No 331
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=32.75 E-value=2e+02 Score=23.36 Aligned_cols=56 Identities=14% Similarity=0.041 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCCCc---hhHHHHHHHHHhcCC--hhHHHHHHHHH
Q 048799 19 TWNVMITGLVKWGELEYARSLFEEMPCRNV---VSWTGIIDGYTRMNR--SNGALALFRRM 74 (331)
Q Consensus 19 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~~ 74 (331)
.-..++.-|...|+.++|.+.++++..|+. .....++......++ .+.+..++..+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L 74 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLL 74 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 456788999999999999999999987752 222333333333332 23455666666
No 332
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=31.27 E-value=83 Score=20.89 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=18.7
Q ss_pred HHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcC
Q 048799 91 FPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCG 134 (331)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 134 (331)
+..+...+..-.|.++++.+.+.++.. +..+....++.+...|
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~i-s~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENI-GLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCC-CHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCC-CHhhHHHHHHHHHHCC
Confidence 333333344445555555555544433 3333333344444444
No 333
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=31.02 E-value=1.4e+02 Score=20.96 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=14.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 048799 52 TGIIDGYTRMNRSNGALALFRRM 74 (331)
Q Consensus 52 ~~l~~~~~~~~~~~~a~~~~~~~ 74 (331)
..++.-|...|+.++|...++++
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL 36 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDL 36 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34555566666666666666665
No 334
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=30.78 E-value=44 Score=27.06 Aligned_cols=27 Identities=15% Similarity=-0.063 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhcc
Q 048799 225 KHYGCLIDMLGRAGRLEQAEKVASGIP 251 (331)
Q Consensus 225 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 251 (331)
.-|.-+...+.+.+++.+|.+.+.++.
T Consensus 297 YPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 297 YPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 344555566666677766666665543
No 335
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=30.77 E-value=1e+02 Score=20.73 Aligned_cols=45 Identities=11% Similarity=0.049 Sum_probs=22.9
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccC
Q 048799 158 SIISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGG 202 (331)
Q Consensus 158 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 202 (331)
.++..+...+++-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 344444444455556666666655554445554444444444444
No 336
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=30.69 E-value=43 Score=27.69 Aligned_cols=68 Identities=15% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHhcCCHHHH---------HHHHhhcccC------CccHHHHHHHHHHHhcCCchhHHHHHHHHHHH------hhcCCC
Q 048799 233 MLGRAGRLEQA---------EKVASGIPSE------ITNVVVWRTLLGACSFHGNVEMGERVTRKILE------MERGYG 291 (331)
Q Consensus 233 ~~~~~g~~~~A---------~~~~~~~~~~------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~ 291 (331)
++...|+++++ ..+|.+++.. .-...-|..+...+.+.+++.+|++.|.++-. ...++.
T Consensus 279 ALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDe 358 (550)
T 3u84_A 279 ALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDE 358 (550)
T ss_dssp HHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGH
T ss_pred hhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchH
Q ss_pred ccHHHHHHH
Q 048799 292 GDYVLMYNI 300 (331)
Q Consensus 292 ~~~~~l~~~ 300 (331)
+.|..+.+.
T Consensus 359 EIYKEf~eI 367 (550)
T 3u84_A 359 EIYKEFFEV 367 (550)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 337
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=30.56 E-value=2.6e+02 Score=23.95 Aligned_cols=67 Identities=6% Similarity=-0.116 Sum_probs=48.4
Q ss_pred cCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHhHHHHHHHHhhhc-CCcHHHHHHHHHHHHc
Q 048799 97 NGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIFSALKLFEDISVE-RKNLVSWTSIISGFAM 165 (331)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~ 165 (331)
...++.|...|.++....+. +...||.|+-.....|+.-+|.-.|-+.... .|-..+...+...+.+
T Consensus 165 ~~~~~~A~~~Y~~A~~~~P~--~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 165 RNQTSQAESYYRHAAQLVPS--NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp TTCHHHHHHHHHHHHHHCTT--BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCC--CCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 34567888899988888555 7788888888888888877777666555443 5777777777666543
No 338
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=30.49 E-value=2.5e+02 Score=23.83 Aligned_cols=58 Identities=16% Similarity=-0.002 Sum_probs=29.9
Q ss_pred CChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHH
Q 048799 167 GMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGC 229 (331)
Q Consensus 167 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 229 (331)
.+.+-|.++-. +.|++--...|..-.+.+...|++++|-++-....+ |+--+..|.+.
T Consensus 343 ~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~--giLRt~~Ti~r 400 (494)
T 1bpo_A 343 QNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK--GILRTPDTIRR 400 (494)
T ss_dssp CCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG--GSSCSHHHHHH
T ss_pred CCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc--ccccCHHHHHH
Confidence 55555555443 334444445555556666666666666665554433 33334444433
No 339
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=30.11 E-value=59 Score=19.04 Aligned_cols=35 Identities=9% Similarity=0.099 Sum_probs=22.7
Q ss_pred ChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcC
Q 048799 63 RSNGALALFRRMVACEYTEPSEITILAVFPAIWQNG 98 (331)
Q Consensus 63 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 98 (331)
..++|...|.+|+...++.|+ .+|...+..+....
T Consensus 13 t~eea~~~F~~LL~e~~V~~~-~tWe~~~~~i~~Dp 47 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSN-ASWEQAMKMIINDP 47 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTT-CCHHHHHHHHHTSG
T ss_pred CHHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccCc
Confidence 457788888888777776554 35666665544433
No 340
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=29.76 E-value=4.1e+02 Score=26.26 Aligned_cols=54 Identities=13% Similarity=0.098 Sum_probs=37.4
Q ss_pred ccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCC
Q 048799 165 MHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLP 222 (331)
Q Consensus 165 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 222 (331)
..+++-.|++++.++.+.. |+...|..++..+...| ++....+.+++.-. ..++
T Consensus 1296 ~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~-w~h~~~~~~~~~~~-~~p~ 1349 (1354)
T 3lxu_X 1296 AHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALG-HEHIRTVINRMMIT-AFPS 1349 (1354)
T ss_dssp HHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH-HSCS
T ss_pred HHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcC-CHHHHHHHHhhhhh-hCcc
Confidence 5788999999999988754 78888888887766555 45555566665443 4444
No 341
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=29.44 E-value=80 Score=21.13 Aligned_cols=25 Identities=8% Similarity=0.128 Sum_probs=12.3
Q ss_pred HHHHHHHhcC-CHhHHHHHHHHhhhc
Q 048799 125 CLIDTYAKCG-CIFSALKLFEDISVE 149 (331)
Q Consensus 125 ~l~~~~~~~g-~~~~A~~~~~~~~~~ 149 (331)
.++..+...+ ..-.|.++++.+.+.
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~ 47 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEA 47 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhh
Confidence 3444444444 445566666555444
No 342
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=28.89 E-value=93 Score=18.33 Aligned_cols=59 Identities=10% Similarity=0.139 Sum_probs=32.8
Q ss_pred HHhccCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCC
Q 048799 179 MQKVVLKPNRVTFLSVLNACSHGG-LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 239 (331)
Q Consensus 179 m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 239 (331)
|.+.|+..+..-. .++..+...+ ..-.+.++++.+.+. +...+..|....+..+.+.|-
T Consensus 8 l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~-~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDM-GEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCC
Confidence 4456666665443 3444554443 455666777777655 444455555555666665554
No 343
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=28.30 E-value=1.4e+02 Score=20.32 Aligned_cols=60 Identities=13% Similarity=0.045 Sum_probs=33.9
Q ss_pred hccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCHh
Q 048799 76 ACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCIF 137 (331)
Q Consensus 76 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 137 (331)
+..|.+++.. -..++..+...+..-.|.++++.+.+.++.. +..+....++.+...|-+.
T Consensus 19 ~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i-s~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 19 KKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNT-SISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTC-CHHHHHHHHHHHHHTTSEE
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC-CHhhHHHHHHHHHHCCcEE
Confidence 4555555443 3344555555556677777777777766555 4444445567777766543
No 344
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=28.25 E-value=1.9e+02 Score=22.97 Aligned_cols=42 Identities=14% Similarity=0.227 Sum_probs=25.5
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 048799 176 FERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE 217 (331)
Q Consensus 176 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 217 (331)
++.+.+.|+.|...++..++..+.+.=.++.+.++++.+...
T Consensus 216 ~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~e 257 (334)
T 2qq8_A 216 FAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRD 257 (334)
T ss_dssp HHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHc
Confidence 334445566666666666666666555666666777666655
No 345
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=27.67 E-value=1e+02 Score=20.26 Aligned_cols=53 Identities=8% Similarity=-0.017 Sum_probs=27.6
Q ss_pred chhHHHHHHHHHHH--hhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhccccC
Q 048799 272 NVEMGERVTRKILE--MERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNALK 324 (331)
Q Consensus 272 ~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 324 (331)
++++|.+++..+.+ ..-+.+..|+..+..+...-.-.+-..++..+.+.++.+
T Consensus 42 ~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l~~FW~~iv~~~lgL 96 (120)
T 1q2z_A 42 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQLNHFWEIVVQDGITL 96 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSTTHHHHHHHHTTCCS
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhHHHHHHHHHHCCcCC
Confidence 56666666666665 222344566666655543222222245555666665543
No 346
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=27.50 E-value=1.2e+02 Score=21.81 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=9.8
Q ss_pred HHHHHHccCChHHHHHHHHHH
Q 048799 159 IISGFAMHGMGKEAVENFERM 179 (331)
Q Consensus 159 l~~~~~~~~~~~~a~~~~~~m 179 (331)
+|.++.+.|++++|.+++.++
T Consensus 38 vI~GLlql~~ydea~~yI~~~ 58 (192)
T 1ixm_A 38 LIKGNLSLQKYDRVFEMIEEM 58 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444443
No 347
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=26.41 E-value=2.5e+02 Score=22.41 Aligned_cols=39 Identities=10% Similarity=0.105 Sum_probs=21.2
Q ss_pred HHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 048799 179 MQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEE 217 (331)
Q Consensus 179 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 217 (331)
+.+.|+.|...++..++..+.+.=.++.+.++++.+...
T Consensus 235 L~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~ 273 (345)
T 2qfz_A 235 LDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSE 273 (345)
T ss_dssp HHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTS
T ss_pred HHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhC
Confidence 334455555555555555555555555666666665544
No 348
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=25.49 E-value=1e+02 Score=17.69 Aligned_cols=29 Identities=10% Similarity=-0.034 Sum_probs=14.0
Q ss_pred HHHHHHHhhcCchhHHHHHHhhhhhcCCC
Q 048799 88 LAVFPAIWQNGDVRNCQLIHGYGEKRGFN 116 (331)
Q Consensus 88 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 116 (331)
+.++..++...-.+.++-.+.++.+.|..
T Consensus 6 ~Qll~l~Aed~AieDaiy~L~~aL~~g~I 34 (65)
T 2f6m_A 6 NQLYNLVAQDYALTDTIEALSRMLHRGTI 34 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33444444444455555555555555443
No 349
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=25.49 E-value=2e+02 Score=23.41 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHH
Q 048799 153 LVSWTSIISGFAMHGMGKEAVENFERM 179 (331)
Q Consensus 153 ~~~~~~l~~~~~~~~~~~~a~~~~~~m 179 (331)
+..|..+...+.+.+++.+|++.+.+.
T Consensus 296 vYPYtylgGy~yR~~~~reAl~~WA~A 322 (472)
T 3re2_A 296 IYPYTYLGGYYYRKKKYYEAIASWVDA 322 (472)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhcchHHHHHHHHHHH
Confidence 444555555666666666666666544
No 350
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=25.26 E-value=1.1e+02 Score=21.51 Aligned_cols=16 Identities=0% Similarity=0.196 Sum_probs=8.9
Q ss_pred HHcCCHHHHHHHHhhC
Q 048799 28 VKWGELEYARSLFEEM 43 (331)
Q Consensus 28 ~~~g~~~~A~~~~~~~ 43 (331)
+..|+.+....++..-
T Consensus 13 ~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 13 ANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHTTCHHHHHHHHTCT
T ss_pred HHhccHHHHHHHHHcC
Confidence 4456666665555543
No 351
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=24.91 E-value=1.3e+02 Score=18.72 Aligned_cols=27 Identities=15% Similarity=-0.050 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHH
Q 048799 259 VWRTLLGACSFHGNVEMGERVTRKILE 285 (331)
Q Consensus 259 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 285 (331)
.+......+.+.|++++|++..+++..
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344455566667777777666665553
No 352
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=24.90 E-value=1.7e+02 Score=19.97 Aligned_cols=59 Identities=7% Similarity=0.009 Sum_probs=31.7
Q ss_pred hccCCCCchHHHHHHHHHHhhcC-chhHHHHHHhhhhhcCCCcchhHHHHHHHHHHHhcCCH
Q 048799 76 ACEYTEPSEITILAVFPAIWQNG-DVRNCQLIHGYGEKRGFNAFHIHVSNCLIDTYAKCGCI 136 (331)
Q Consensus 76 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 136 (331)
+..|.+++..- ..++..+...+ ..-.|.++++.+.+.++.. +..+...-++.+...|-+
T Consensus 9 ~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i-s~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 9 KDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEI-GLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTSE
T ss_pred HHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHCCcE
Confidence 44555555432 23444444444 5566777777777666554 444444445666666543
No 353
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=24.63 E-value=2.6e+02 Score=22.04 Aligned_cols=28 Identities=7% Similarity=0.220 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCCCC
Q 048799 20 WNVMITGLVKWGELEYARSLFEEMPCRN 47 (331)
Q Consensus 20 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 47 (331)
...++.-|...|+.++|...++++..|.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~ 33 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 33 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 4568888999999999999999998664
No 354
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=23.72 E-value=2.5e+02 Score=23.69 Aligned_cols=61 Identities=10% Similarity=0.144 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhhcCC----------cHHHHHHH-HHHHHccCChHHHHHHHHHHHhc
Q 048799 122 VSNCLIDTYAKCGCIFSALKLFEDISVERK----------NLVSWTSI-ISGFAMHGMGKEAVENFERMQKV 182 (331)
Q Consensus 122 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~ 182 (331)
..+.|.+.|.+.|+.+-+..+++.+....+ ...+|... ...+...+++.+|.+.|......
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 557788999999999999999988755421 23455543 45677889999999998887664
No 355
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.36 E-value=1.6e+02 Score=19.27 Aligned_cols=19 Identities=0% Similarity=-0.192 Sum_probs=10.5
Q ss_pred HhccCChHHHHHHHHHHHH
Q 048799 198 CSHGGLVEEGLKFFDKMVE 216 (331)
Q Consensus 198 ~~~~~~~~~a~~~~~~~~~ 216 (331)
+...++++.|..+.-.+..
T Consensus 71 al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 71 ELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3455566666666555543
No 356
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=22.97 E-value=2e+02 Score=20.13 Aligned_cols=57 Identities=9% Similarity=0.008 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhhcCCcHHHHHHHHHHHHccCC--hHHHHHHHHHHH
Q 048799 124 NCLIDTYAKCGCIFSALKLFEDISVERKNLVSWTSIISGFAMHGM--GKEAVENFERMQ 180 (331)
Q Consensus 124 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~ 180 (331)
..+++-|...|+.++|...++++....-.......++..-...++ -+.+-.++..+.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~ 72 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC 72 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 456777888888888888888874322222233333333333332 233445566653
No 357
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=22.10 E-value=1.4e+02 Score=20.72 Aligned_cols=52 Identities=8% Similarity=-0.004 Sum_probs=24.2
Q ss_pred chhHHHHHHHHHHH--hhcCCCccHHHHHHHHhhhccCcchHHHHHHHhhcccc
Q 048799 272 NVEMGERVTRKILE--MERGYGGDYVLMYNILAGVWRYGDAERLRRVVDERNAL 323 (331)
Q Consensus 272 ~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 323 (331)
++++|.+++..+.+ ..-+.+..|+.++..+...-.-.+-..++..+.+.++.
T Consensus 73 ~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK~~l~~~~l~~FW~~Iv~~~lg 126 (152)
T 1rw2_A 73 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQLNHFWEIVVQDGIT 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHSCCHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhHHHHHHHHHHCCcc
Confidence 45566666666655 22234455655555443211111224455555555543
No 358
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=21.75 E-value=1.1e+02 Score=16.89 Aligned_cols=10 Identities=20% Similarity=0.003 Sum_probs=1.6
Q ss_pred HHhcCCHhHH
Q 048799 130 YAKCGCIFSA 139 (331)
Q Consensus 130 ~~~~g~~~~A 139 (331)
+...|++++|
T Consensus 50 LmNrG~Yq~A 59 (61)
T 3ph0_C 50 LMNQGDYQRA 59 (61)
T ss_dssp HHHC------
T ss_pred HHccchHhHh
Confidence 3344444443
No 359
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=21.50 E-value=3.8e+02 Score=22.88 Aligned_cols=75 Identities=11% Similarity=0.064 Sum_probs=50.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHhccCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHh
Q 048799 159 IISGFAMHGMGKEAVENFERMQKVVLKPNRVTFLSVLNACSHGGLVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGR 236 (331)
Q Consensus 159 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 236 (331)
|.........++.|...|.+..... +-+...|+.|.-.....|+.-+|.-+|-+... -..|-......|...+.+
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~--~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHh--cCCCChhHHHHHHHHHHH
Confidence 3344445567889999998887742 33457788887777777777666666555543 456777777777776654
No 360
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=20.77 E-value=1.1e+02 Score=22.15 Aligned_cols=73 Identities=5% Similarity=-0.170 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHHHhcCCCCcHhhHHHHHHHHHhcCCHHHHHHHHhhcccCCccHHHHHHHHHHHhcCCchhHHHHHHHH
Q 048799 203 LVEEGLKFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKVASGIPSEITNVVVWRTLLGACSFHGNVEMGERVTRK 282 (331)
Q Consensus 203 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 282 (331)
+.....++.+.++.. .-+-.-.-.+|.++.+.|++++|.+++..+... +..... ..+.+++.-|--++.+
T Consensus 14 ~l~~~~~~~~~LR~q---rHdf~NkLqvI~GLlql~~ydea~~yI~~~~~~------~q~~~~-~~~i~~P~la~lLl~K 83 (192)
T 1ixm_A 14 DTALTNELIHLLGHS---RHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVID------AKHESK-LSNLKTPHLAFDFLTF 83 (192)
T ss_dssp CHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------HHHHHH-HHTTTCHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------HHHHHH-HHhCCCHHHHHHHHHH
Confidence 445556666666544 113333446688899999999999999888764 112222 4556777666666655
Q ss_pred HHH
Q 048799 283 ILE 285 (331)
Q Consensus 283 ~~~ 285 (331)
..+
T Consensus 84 ~~~ 86 (192)
T 1ixm_A 84 NWK 86 (192)
T ss_dssp GGS
T ss_pred HHH
Confidence 543
No 361
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=20.68 E-value=2.2e+02 Score=19.82 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=12.8
Q ss_pred HHHHHhhhccCcchHHHHHHHhh
Q 048799 297 MYNILAGVWRYGDAERLRRVVDE 319 (331)
Q Consensus 297 l~~~~~~~g~~~~a~~~~~~~~~ 319 (331)
+..++.-......++.-|+.+..
T Consensus 121 L~elL~~ND~Ln~vl~kY~~~~~ 143 (158)
T 1naf_A 121 LAEILQANDNLTQVINLYKQLVR 143 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhc
Confidence 44555555555556666666644
No 362
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=20.37 E-value=1.4e+02 Score=22.96 Aligned_cols=60 Identities=17% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCchhHHHHHHhhhh
Q 048799 52 TGIIDGYTRMNRSNGALALFRRMVACEYTEPSEITILAVFPAIWQNGDVRNCQLIHGYGE 111 (331)
Q Consensus 52 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 111 (331)
..|-..|....++.....++..|+..-...|++.....++++|.+.-+-.+|.+.+....
T Consensus 177 ~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~L 236 (268)
T 2fv2_A 177 TGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCL 236 (268)
T ss_dssp HHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHS
T ss_pred hhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhC
No 363
>3ub0_A Non-structural protein 6, NSP6,; feline coronavirus, primer-independen polymerase, replication; 2.60A {Feline infectious peritonitis virus}
Probab=20.33 E-value=2.4e+02 Score=20.13 Aligned_cols=19 Identities=5% Similarity=-0.032 Sum_probs=13.3
Q ss_pred chhHHHHHHhhhhhcCCCc
Q 048799 99 DVRNCQLIHGYGEKRGFNA 117 (331)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~ 117 (331)
.++.|.+.|++....|..|
T Consensus 18 ~YE~A~~~Ye~a~~ng~~p 36 (199)
T 3ub0_A 18 AYEKARADLEEAKKNDVSP 36 (199)
T ss_dssp HHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHhcCCCH
Confidence 4677777788877777543
Done!