BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048800
         (755 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1J1E|C Chain C, Crystal Structure Of The 52kda Domain Of Human Cardiac
           Troponin In The Ca2+ Saturated Form
 pdb|1J1E|F Chain F, Crystal Structure Of The 52kda Domain Of Human Cardiac
           Troponin In The Ca2+ Saturated Form
          Length = 180

 Score = 29.6 bits (65), Expect = 6.7,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 8/98 (8%)

Query: 517 VKDLMDRVHESLTYVKIVEESLDVKGDLL-NMRKAADSVWLQVDLHHKWLDVNLRKLSLQ 575
           ++DL  ++H  +   K+ EE  D++  +  N+ + AD      DL  K+    LR++ + 
Sbjct: 63  LQDLARQLHARVD--KVDEERYDIEAKVTKNITEIADLTQKIFDLRGKFKRPTLRRVRIS 120

Query: 576 ADSPKEILEALVDAAKKKYLEQKETYMNQCYIKESTAK 613
           AD+   +++AL+ A  K+ L+ +  ++ Q   KE T K
Sbjct: 121 ADA---MMQALLGARAKESLDLR-AHLKQVK-KEDTEK 153


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,275,759
Number of Sequences: 62578
Number of extensions: 715082
Number of successful extensions: 2085
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2085
Number of HSP's gapped (non-prelim): 5
length of query: 755
length of database: 14,973,337
effective HSP length: 106
effective length of query: 649
effective length of database: 8,340,069
effective search space: 5412704781
effective search space used: 5412704781
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)