BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048800
         (755 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P21407|VPRT_SMRVH Protease OS=Squirrel monkey retrovirus GN=pro PE=4 SV=1
          Length = 323

 Score = 34.7 bits (78), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 50/135 (37%), Gaps = 30/135 (22%)

Query: 401 NCNISDESRSESQPSS-------KLDLSRFVLHLEGENELVEIIMKNNCDAT----DHWM 449
           N N     R  S P S       ++   R  L L+   +L   I+    DAT     HW 
Sbjct: 148 NSNFHKPYRGASAPGSSDVYWVQQISQQRPTLKLKLNGKLFSGILDTGADATVISYTHWP 207

Query: 450 RK-------------GKKQQPEHLLQLLKQSNSQGFKGVQDFDSYLVPCLDVVEPPNCWA 496
           R              G+   P+   Q+LK  +S+G  G      Y++P L V    N W 
Sbjct: 208 RNWPLTTVATHLRGIGQATNPQQSAQMLKWEDSEGNNG--HITPYVLPNLPV----NLWG 261

Query: 497 LPVVTLTTIAVALPN 511
             +++   + +  PN
Sbjct: 262 RDILSQMKLVMCSPN 276


>sp|Q92ME6|AROK_RHIME Shikimate kinase OS=Rhizobium meliloti (strain 1021) GN=aroK PE=3
           SV=1
          Length = 192

 Score = 33.9 bits (76), Expect = 5.4,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 5/78 (6%)

Query: 546 NMRKAADSVWLQVDLHHKWLDVNLRKLS--LQADSPKEILEALVDAAKKKYLEQKETYMN 603
           +++K   ++WL  +L   W  VN R     L+ ++PK+ LE L+ A    Y E   T ++
Sbjct: 111 HIKKGGLTIWLNAELDVLWERVNKRDTRPLLKTENPKQTLENLMRARYPIYAEADLTVLS 170

Query: 604 QCYIKESTAKWPIKVLAS 621
           +   KE+  +   +VLA+
Sbjct: 171 RDVKKEAMVE---EVLAA 185


>sp|Q6FMJ2|SHE2_CANGA SWI5-dependent HO expression protein 2 OS=Candida glabrata (strain
           ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
           GN=SHE2 PE=3 SV=1
          Length = 244

 Score = 33.5 bits (75), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 5/79 (6%)

Query: 474 GVQDFDSYLVPCLDVVEPPNCWALPVVTLTTIAVALPNIKSCFVKDLMDRVHESLT-YVK 532
            +Q F SYLV CL+ ++  N + L  +    IA  L N    F +D+ D V ++   +VK
Sbjct: 93  NIQTFASYLVKCLETIDLLNYFLLKPLQKELIAKTL-NFDLVFPEDITDTVEDTYNHFVK 151

Query: 533 IVE---ESLDVKGDLLNMR 548
             +   ESL +   LL++ 
Sbjct: 152 FTQWSIESLSIDDPLLDIE 170


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.135    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 256,773,643
Number of Sequences: 539616
Number of extensions: 10135823
Number of successful extensions: 34628
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 34623
Number of HSP's gapped (non-prelim): 13
length of query: 755
length of database: 191,569,459
effective HSP length: 125
effective length of query: 630
effective length of database: 124,117,459
effective search space: 78193999170
effective search space used: 78193999170
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 65 (29.6 bits)