Query 048800
Match_columns 755
No_of_seqs 17 out of 19
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 13:23:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02855 spore_yabG sporulati 49.9 13 0.00028 39.9 2.7 42 423-466 106-151 (283)
2 PF15221 LEP503: Lens epitheli 39.3 17 0.00038 31.3 1.4 14 381-395 46-59 (61)
3 smart00802 UME Domain in UVSB 35.8 36 0.00078 31.4 3.0 62 624-689 13-74 (107)
4 PF05582 Peptidase_U57: YabG p 34.7 26 0.00056 37.7 2.1 46 419-466 103-152 (287)
5 COG3735 Uncharacterized protei 25.1 35 0.00077 36.9 1.2 22 425-446 276-297 (299)
6 PF06143 Baculo_11_kDa: Baculo 22.9 73 0.0016 29.1 2.6 14 82-95 14-27 (84)
7 PRK14892 putative transcriptio 22.0 22 0.00048 32.8 -0.8 20 551-570 56-75 (99)
8 PF08064 UME: UME (NUC010) dom 21.6 1.1E+02 0.0023 27.7 3.4 54 626-681 15-68 (107)
9 KOG4189 Uncharacterized conser 21.0 74 0.0016 33.2 2.5 34 584-627 128-161 (209)
10 PF15445 ATS: acidic terminal 20.7 30 0.00065 38.7 -0.3 41 554-603 283-323 (437)
No 1
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=49.93 E-value=13 Score=39.90 Aligned_cols=42 Identities=26% Similarity=0.492 Sum_probs=35.8
Q ss_pred eeEEecChhhHHHHHH----HhCCcchhHHHHhccccChhHHHHHHHH
Q 048800 423 FVLHLEGENELVEIIM----KNNCDATDHWMRKGKKQQPEHLLQLLKQ 466 (755)
Q Consensus 423 FVLHLEGEeeLVe~M~----k~N~dATdhWi~~G~KkQPk~lieLLEk 466 (755)
=||||.|.+|-.+.-+ +-|.+|.-+|+. ||+||+-+.+|||+
T Consensus 106 rVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~--E~eqp~~i~~Ll~~ 151 (283)
T TIGR02855 106 RVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCK--EKEMPEKVLDLIEE 151 (283)
T ss_pred cEEeecCCHHHHHHHHHHHHHhCCceEEEEec--chhchHHHHHHHHH
Confidence 3999999999887665 458888888875 78999999999995
No 2
>PF15221 LEP503: Lens epithelial cell protein LEP503
Probab=39.32 E-value=17 Score=31.34 Aligned_cols=14 Identities=57% Similarity=0.951 Sum_probs=10.3
Q ss_pred HHHHHHhhhhhhhhc
Q 048800 381 VSRILLFCDCCIGLL 395 (755)
Q Consensus 381 ~~~IL~fc~~c~k~l 395 (755)
+..||+|| ||+|++
T Consensus 46 ~aYilLCC-WCIKel 59 (61)
T PF15221_consen 46 VAYILLCC-WCIKEL 59 (61)
T ss_pred HHHHHHHH-HHHHHH
Confidence 45577777 998876
No 3
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=35.82 E-value=36 Score=31.35 Aligned_cols=62 Identities=18% Similarity=0.329 Sum_probs=42.8
Q ss_pred hhHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHhhhcCccccccccccchhhHHhhhhHhHHH
Q 048800 624 MYRISQTILLNCQSRNIQTSERLFEVLSVMISDIVGACLTNLPRVISLNCLSSIFEEREESVRNTV 689 (755)
Q Consensus 624 MYRIsqTiLln~e~~n~~~~erLfe~ltvmISDIlgaCltNlp~VIs~kCL~saiEeRE~sVR~Av 689 (755)
|=+++.++..-........-.|-..++..||. +.|++.+-...=| +-||.+|+|+-| .|+..
T Consensus 13 l~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~-~~g~~i~~a~pQI-~acL~saL~~~e--L~~~a 74 (107)
T smart00802 13 LAVFSNILHDSSGKKPYNEKKRALRSIGFLIK-LMGKHISSALPQI-MACLQSALEIPE--LRSLA 74 (107)
T ss_pred HHHHHHHHcCcccCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHhCchh--HHHHH
Confidence 34566666444423333456778899999999 8888887766556 789999998544 66554
No 4
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=34.67 E-value=26 Score=37.73 Aligned_cols=46 Identities=30% Similarity=0.491 Sum_probs=36.1
Q ss_pred ccceeeEEecChhhHHHHHHH----hCCcchhHHHHhccccChhHHHHHHHH
Q 048800 419 DLSRFVLHLEGENELVEIIMK----NNCDATDHWMRKGKKQQPEHLLQLLKQ 466 (755)
Q Consensus 419 DL~rFVLHLEGEeeLVe~M~k----~N~dATdhWi~~G~KkQPk~lieLLEk 466 (755)
++.-=||||.|.+|-.+.=|+ -+.+|.-+++. |++||+-+.+|||+
T Consensus 103 ~~PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~--E~eqp~~i~~Ll~~ 152 (287)
T PF05582_consen 103 ERPGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVP--EKEQPEKIYRLLEE 152 (287)
T ss_pred CCCCeEEEecCCHHHHHHHHHHHHHcCCceEEEEec--hHHhhHHHHHHHHH
Confidence 333459999999998877664 46777776664 79999999999994
No 5
>COG3735 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.05 E-value=35 Score=36.91 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=20.1
Q ss_pred EEecChhhHHHHHHHhCCcchh
Q 048800 425 LHLEGENELVEIIMKNNCDATD 446 (755)
Q Consensus 425 LHLEGEeeLVe~M~k~N~dATd 446 (755)
|||=|||.|||.|.|.++-.|.
T Consensus 276 lHL~G~e~L~e~Lrk~g~t~tr 297 (299)
T COG3735 276 LHLPGPEGLVELLRKDGFTVTR 297 (299)
T ss_pred ccccCcccHHHHHHHcCCeeee
Confidence 7999999999999999987763
No 6
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=22.95 E-value=73 Score=29.12 Aligned_cols=14 Identities=36% Similarity=0.230 Sum_probs=10.3
Q ss_pred CCCcchHHhhhccc
Q 048800 82 AMPRRQDQLAKLSS 95 (755)
Q Consensus 82 ~MP~r~DQLaKLsS 95 (755)
+-|-=+|||.++-|
T Consensus 14 ~si~d~DQL~qlVs 27 (84)
T PF06143_consen 14 NSILDYDQLEQLVS 27 (84)
T ss_pred CCCCcHHHHHHHHH
Confidence 55667899998853
No 7
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=22.04 E-value=22 Score=32.77 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=15.3
Q ss_pred cceeeecccccccccccccc
Q 048800 551 ADSVWLQVDLHHKWLDVNLR 570 (755)
Q Consensus 551 A~vVWlgVDLyhKWldVDLr 570 (755)
..-.+--||.|++|+|-=..
T Consensus 56 V~~l~epIDVY~~wiD~~~e 75 (99)
T PRK14892 56 VPSVYDEVDVYNKFIDLYLE 75 (99)
T ss_pred CCccccchhhHHHHHHHHHh
Confidence 44567889999999986443
No 8
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=21.58 E-value=1.1e+02 Score=27.67 Aligned_cols=54 Identities=20% Similarity=0.313 Sum_probs=40.5
Q ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHHHHHHhhhcCccccccccccchhhHHh
Q 048800 626 RISQTILLNCQSRNIQTSERLFEVLSVMISDIVGACLTNLPRVISLNCLSSIFEER 681 (755)
Q Consensus 626 RIsqTiLln~e~~n~~~~erLfe~ltvmISDIlgaCltNlp~VIs~kCL~saiEeR 681 (755)
+++..+....+......-.+-.+.+..||- ..|...+-...=| +.||.++.|..
T Consensus 15 ~f~~~l~d~~~~~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI-~a~L~sal~~~ 68 (107)
T PF08064_consen 15 RFSDVLNDLRGKKPIPEKKRALRSIEELIK-LGGSHISSARPQI-MACLQSALEIP 68 (107)
T ss_pred HHHHHHhccccCCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHH-HHHHHHHhCCh
Confidence 555555554555666667788999999999 8888887766666 79999999554
No 9
>KOG4189 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.97 E-value=74 Score=33.15 Aligned_cols=34 Identities=29% Similarity=0.567 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhhhccceeeccCCCCCchhhhccchhhHH
Q 048800 584 EALVDAAKKKYLEQKETYMNQCYIKESTAKWPIKVLASNSMYRI 627 (755)
Q Consensus 584 e~Lad~AK~r~~e~k~k~~~~C~~KesPS~WPIKvLAaNSMYRI 627 (755)
+.+.|+||+-|.+--++ |- .|||++-++=.||-.
T Consensus 128 ~s~~diakesYd~~lak--------hH--sW~IRtAV~~amYtL 161 (209)
T KOG4189|consen 128 ESLKDIAKESYDKTLAK--------HH--SWAIRTAVAAAMYTL 161 (209)
T ss_pred chhhHHHHHHHHHhhhc--------cc--cHHHHHHHHHHHHhC
Confidence 45778999888764333 22 399999999999954
No 10
>PF15445 ATS: acidic terminal segments, variant surface antigen of PfEMP1
Probab=20.70 E-value=30 Score=38.68 Aligned_cols=41 Identities=32% Similarity=0.503 Sum_probs=29.4
Q ss_pred eeecccccccccccccccccccCCChHHHHHHHHHHHHHHHHHHHhhhcc
Q 048800 554 VWLQVDLHHKWLDVNLRKLSLQADSPKEILEALVDAAKKKYLEQKETYMN 603 (755)
Q Consensus 554 VWlgVDLyhKWldVDLrKLS~Q~kspkE~Le~Lad~AK~r~~e~k~k~~~ 603 (755)
.=-+.||||||||- -|.+--|-+.-+|.|.+|- |-|++..+
T Consensus 283 I~nQl~LfHkWLDR-HRdmCekw~~kee~L~KLk--------EeW~~e~~ 323 (437)
T PF15445_consen 283 IHNQLNLFHKWLDR-HRDMCEKWNNKEELLDKLK--------EEWEKENH 323 (437)
T ss_pred hhhhHHHHHHHHHH-HHHHHHHhccHHHHHHHHH--------HHHhcccC
Confidence 34478999999994 3667777788888887774 34555555
Done!