Query 048800
Match_columns 755
No_of_seqs 17 out of 19
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 23:33:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lkl_A Erythrocyte membrane pr 59.5 2.9 9.8E-05 36.4 1.1 35 553-588 42-76 (81)
2 2xtc_A F-box-like/WD repeat-co 16.8 47 0.0016 29.2 1.3 29 519-548 48-76 (90)
3 1wii_A Hypothetical UPF0222 pr 14.5 24 0.00081 30.6 -1.1 15 553-567 63-77 (85)
4 2cr7_A Paired amphipathic heli 13.0 43 0.0015 28.1 0.1 52 523-591 9-60 (80)
5 4aq4_A SN-glycerol-3-phosphate 12.5 1.5E+02 0.0052 28.0 3.6 29 574-602 390-418 (419)
6 2czy_A Paired amphipathic heli 12.4 52 0.0018 27.3 0.4 52 523-591 3-54 (77)
7 1wv8_A TT1413, hypothetical pr 12.3 1.5E+02 0.0053 25.2 3.2 29 568-596 23-51 (73)
8 4dzo_A Mitotic spindle assembl 12.2 71 0.0024 28.9 1.2 51 174-247 62-114 (123)
9 4gvo_A LMO2349 protein; struct 11.9 46 0.0016 29.6 -0.1 42 319-360 31-74 (243)
10 1iq5_B Ca2+/calmodulin depende 11.6 1.2E+02 0.0041 22.0 2.0 13 242-254 7-19 (27)
No 1
>2lkl_A Erythrocyte membrane protein 1 (pfemp1); helical protein, cell adhesion; NMR {Plasmodium falciparum}
Probab=59.51 E-value=2.9 Score=36.38 Aligned_cols=35 Identities=37% Similarity=0.579 Sum_probs=27.1
Q ss_pred eeeecccccccccccccccccccCCChHHHHHHHHH
Q 048800 553 SVWLQVDLHHKWLDVNLRKLSLQADSPKEILEALVD 588 (755)
Q Consensus 553 vVWlgVDLyhKWldVDLrKLS~Q~kspkE~Le~Lad 588 (755)
-+==+.||||||||- -|.+--|=++-+|+|.+|-|
T Consensus 42 PI~NQLnLfHkWLDR-HRdMCEkw~nkee~L~KLkE 76 (81)
T 2lkl_A 42 PIMNQLDLLHKWLDR-HRDMCEKWKSKEDILHKLNE 76 (81)
T ss_dssp SSCTTHHHHHHHHHH-TGGGGGGTCCSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHccHHHHHHHHHH
Confidence 344478999999995 36677777888999988754
No 2
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=16.79 E-value=47 Score=29.20 Aligned_cols=29 Identities=28% Similarity=0.528 Sum_probs=24.7
Q ss_pred HHHHHhhhccchhhhhhhcccccccccccc
Q 048800 519 DLMDRVHESLTYVKIVEESLDVKGDLLNMR 548 (755)
Q Consensus 519 kLi~~vnE~L~YVk~iE~nLD~~g~L~n~R 548 (755)
-||+-|+.||.|+. +|.++|.+|+.++-|
T Consensus 48 aLVsllQKGL~Y~~-~E~~~~~~g~~~~~~ 76 (90)
T 2xtc_A 48 ALISILQKGLQYVE-AEISINEDGTVFDGR 76 (90)
T ss_dssp HHHHHHHHHHHHHH-HHHHTTSSCCTTCC-
T ss_pred hHHHHHHHHHHHHH-HHHHhcCCCCccCCC
Confidence 57888999999997 799999999977666
No 3
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=14.49 E-value=24 Score=30.59 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=11.6
Q ss_pred eeeeccccccccccc
Q 048800 553 SVWLQVDLHHKWLDV 567 (755)
Q Consensus 553 vVWlgVDLyhKWldV 567 (755)
-.+--||.|++|+|-
T Consensus 63 ~L~epiDVYs~WiDa 77 (85)
T 1wii_A 63 YLSEPVDVYSDWIDA 77 (85)
T ss_dssp SSCCTTHHHHHHHHH
T ss_pred ccCcchhhHHHHHHH
Confidence 356678999999873
No 4
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=13.00 E-value=43 Score=28.10 Aligned_cols=52 Identities=13% Similarity=0.288 Sum_probs=35.7
Q ss_pred HhhhccchhhhhhhcccccccccccccccceeeecccccccccccccccccccCCChHHHHHHHHHHHH
Q 048800 523 RVHESLTYVKIVEESLDVKGDLLNMRKAADSVWLQVDLHHKWLDVNLRKLSLQADSPKEILEALVDAAK 591 (755)
Q Consensus 523 ~vnE~L~YVk~iE~nLD~~g~L~n~RKaA~vVWlgVDLyhKWldVDLrKLS~Q~kspkE~Le~Lad~AK 591 (755)
++++|+.||+.+.+-.-.+- +.|...|++ ++..-.|..++.++.+++.+.=|
T Consensus 9 ~~~dA~~yl~~VK~rF~~~p----------------~~Y~~FL~i-m~~fk~~~~~~~~v~~rV~~Lf~ 60 (80)
T 2cr7_A 9 HVEDALTYLDQVKIRFGSDP----------------ATYNGFLEI-MKEFKSQSIDTPGVIRRVSQLFH 60 (80)
T ss_dssp CSCCSHHHHHHHHHHTSSCH----------------HHHHHHHHH-HHHHHTTSSCHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHHHHccCh----------------HHHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHc
Confidence 47899999999987664321 357777765 33333477888898888776543
No 5
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=12.53 E-value=1.5e+02 Score=28.03 Aligned_cols=29 Identities=10% Similarity=0.206 Sum_probs=24.8
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 048800 574 LQADSPKEILEALVDAAKKKYLEQKETYM 602 (755)
Q Consensus 574 ~Q~kspkE~Le~Lad~AK~r~~e~k~k~~ 602 (755)
...+||+|.|+++.+.+.+-+.+|++.+-
T Consensus 390 ~g~~t~e~al~~~~~~~~~~L~~y~k~~K 418 (419)
T 4aq4_A 390 TGKKTPQQALDTAVERGNQLLRRFEKSTK 418 (419)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44589999999999999999999988753
No 6
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=12.40 E-value=52 Score=27.34 Aligned_cols=52 Identities=13% Similarity=0.288 Sum_probs=35.9
Q ss_pred HhhhccchhhhhhhcccccccccccccccceeeecccccccccccccccccccCCChHHHHHHHHHHHH
Q 048800 523 RVHESLTYVKIVEESLDVKGDLLNMRKAADSVWLQVDLHHKWLDVNLRKLSLQADSPKEILEALVDAAK 591 (755)
Q Consensus 523 ~vnE~L~YVk~iE~nLD~~g~L~n~RKaA~vVWlgVDLyhKWldVDLrKLS~Q~kspkE~Le~Lad~AK 591 (755)
++++|+.||+.+.+-.-.+- +.|+..|++ ++..-.|..++.++.+++.+.=+
T Consensus 3 ~~~dA~~yl~~VK~~F~~~p----------------~~Y~~FL~i-m~~~k~~~~~~~~v~~rv~~Lf~ 54 (77)
T 2czy_A 3 HVEDALTYLDQVKIRFGSDP----------------ATYNGFLEI-MKEFKSQSIDTPGVIRRVSQLFH 54 (77)
T ss_dssp SHHHHHHHHHHHHHHTTTCH----------------HHHHHHHHH-HHHHHTTCSCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHccCh----------------HHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHc
Confidence 57899999999987664321 357777765 33333477888899888776543
No 7
>1wv8_A TT1413, hypothetical protein TTHA1013; structural genomics, unknown function, novel F riken structural genomics/proteomics initiative, RSGI; 2.20A {Thermus thermophilus} SCOP: d.304.1.1
Probab=12.31 E-value=1.5e+02 Score=25.18 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=26.0
Q ss_pred ccccccccCCChHHHHHHHHHHHHHHHHH
Q 048800 568 NLRKLSLQADSPKEILEALVDAAKKKYLE 596 (755)
Q Consensus 568 DLrKLS~Q~kspkE~Le~Lad~AK~r~~e 596 (755)
|+.-|-.|++|.+|.++++-++++.-.+.
T Consensus 23 di~Glvtea~Tleel~~~i~~~i~~lLe~ 51 (73)
T 1wv8_A 23 DVPGLATEAATLEELLAKLAVMVPELLEE 51 (73)
T ss_dssp SSTTCCCEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCceeeecCCHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999876654
No 8
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=12.20 E-value=71 Score=28.92 Aligned_cols=51 Identities=24% Similarity=0.298 Sum_probs=31.4
Q ss_pred ccccchhhhhhhhhHH--HHhhcCCCcCCchhhHHHHHHHHHHHHHhhcCCceeeeeeeeeeecchhHHHHhHHHH
Q 048800 174 PINKQCLERKYNKKYE--LALKEGSNEADTPVVKKLKEHLMKHWVMAHTCSPQFVMGRSVTCVASGALCLLSALTL 247 (755)
Q Consensus 174 p~~K~y~e~KY~k~ye--~Alke~s~~~~~~~~~kLredLmKfWmMAHTssPQFv~gRSVtctAsGa~ClLsa~tL 247 (755)
|...+||.++|..+-. +-+- ++ +....+ ++++++|.-.|-|=| |||||+||
T Consensus 62 ~~~~d~L~F~~~~~~g~~~~ll----~t--~f~~~~-~~~i~~~l~~~~siP----------------~FLaalTL 114 (123)
T 4dzo_A 62 EHPGDCLIFKATSPSGSKMQLL----ET--EFSHTV-GELIEVHLRRQDSIP----------------AFLSSLTL 114 (123)
T ss_dssp SSTTCCEEEEECC--CCCEEEE----CC--TTGGGC-HHHHHHHTTSSCCHH----------------HHHHHHHH
T ss_pred CCCCCeEEEEecCCCCceeeec----CC--hhHhHH-HHHHHHHHHcCCCCc----------------hHhHHHHH
Confidence 4445688888764210 1121 11 122333 679999999888877 88999997
No 9
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=11.86 E-value=46 Score=29.63 Aligned_cols=42 Identities=12% Similarity=0.280 Sum_probs=23.0
Q ss_pred ehhhHHHHHHHhhcC-C-ceeecCCcccchhhhhhhhhhhheee
Q 048800 319 VERYWIQMLEELKEC-P-SVFQIPNRPCRKLFHESKSKCLNVCI 360 (755)
Q Consensus 319 VE~YW~~~L~e~ke~-P-l~~~i~~R~~RKlaHd~k~~~ld~Ci 360 (755)
+.||=++.+.++-+. + +.+.+..-....+-+.+++-=.|+.+
T Consensus 31 ~~G~~vdl~~~ia~~l~g~~~~~~~~~~~~~~~~l~~g~~D~~~ 74 (243)
T 4gvo_A 31 LTGYDVELVKEIDKRLPGYKFKFKTMDFSNLLVSLGAGKVDIVA 74 (243)
T ss_dssp EESHHHHHHHHHHHTCTTEEEEEEECCGGGHHHHHHTTSCSEEC
T ss_pred EEEhHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCCEec
Confidence 567877777776433 2 44433333334455556666667654
No 10
>1iq5_B Ca2+/calmodulin dependent kinase kinase; EF-hand, protein-peptide complex, metal binding protein/protein binding complex; 1.80A {Xenopus laevis}
Probab=11.61 E-value=1.2e+02 Score=22.02 Aligned_cols=13 Identities=31% Similarity=0.378 Sum_probs=11.4
Q ss_pred HhHHHHHHHHHhh
Q 048800 242 LSALTLAETMLRS 254 (755)
Q Consensus 242 Lsa~tL~EAmlRS 254 (755)
|+++.|+.+|+|-
T Consensus 7 l~Tvilvk~Ml~~ 19 (27)
T 1iq5_B 7 LDTLILVKAMGHR 19 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhc
Confidence 7899999999973
Done!