Query 048800
Match_columns 755
No_of_seqs 17 out of 19
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 23:34:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048800.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048800hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cqea1 g.66.1.1 (A:458-513) Z 31.5 3.9 0.00028 31.8 -0.5 8 54-61 1-8 (56)
2 d2gi3a1 c.117.1.1 (A:1-475) Gl 25.2 18 0.0013 33.8 3.0 42 566-607 3-46 (475)
3 d2pc6a2 d.58.18.6 (A:1-77) Ace 24.1 18 0.0013 28.7 2.2 30 411-440 34-63 (77)
4 d2f1fa1 d.58.18.6 (A:2-77) Ace 21.4 20 0.0015 28.3 2.1 30 411-440 33-62 (76)
5 d2fgca2 d.58.18.6 (A:27-104) A 20.4 21 0.0015 28.3 1.9 30 411-440 35-64 (78)
6 d1g25a_ g.44.1.1 (A:) TFIIH Ma 19.6 20 0.0014 26.4 1.5 26 294-320 36-61 (65)
7 d2fi2a1 a.28.3.2 (A:37-128) Zi 16.7 20 0.0015 29.3 1.0 22 559-587 31-52 (92)
8 d2pila_ d.24.1.1 (A:) Pilin Gc 15.4 20 0.0015 27.5 0.7 24 158-181 6-29 (158)
9 d1wiia_ g.41.3.4 (A:) Hypothet 13.7 12 0.00088 30.7 -1.1 13 554-566 64-76 (85)
10 d2ckxa1 a.4.1.3 (A:578-660) Te 12.0 50 0.0036 25.6 2.1 34 556-589 38-76 (83)
No 1
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.45 E-value=3.9 Score=31.83 Aligned_cols=8 Identities=50% Similarity=1.306 Sum_probs=4.0
Q ss_pred ccccceee
Q 048800 54 FPCKCFSL 61 (755)
Q Consensus 54 fpck~f~l 61 (755)
||||||-.
T Consensus 1 FPCK~yHt 8 (56)
T d2cqea1 1 FPCKLYHT 8 (56)
T ss_dssp SBCSHHHH
T ss_pred CCcceeec
Confidence 45555543
No 2
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]}
Probab=25.21 E-value=18 Score=33.83 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=31.9
Q ss_pred ccccccccccC--CChHHHHHHHHHHHHHHHHHHHhhhccceee
Q 048800 566 DVNLRKLSLQA--DSPKEILEALVDAAKKKYLEQKETYMNQCYI 607 (755)
Q Consensus 566 dVDLrKLS~Q~--kspkE~Le~Lad~AK~r~~e~k~k~~~~C~~ 607 (755)
|.|++++++++ ++-+..-|+|++++-.|.+++..+-+..+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ri~~~~~~lna~~~~ 46 (475)
T d2gi3a1 3 DLDFRKLTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISV 46 (475)
T ss_dssp CSCGGGCCHHHHTTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEE
T ss_pred CCChHHhHHHHHHHcCCCCHHHHHHHHHHHHHHHCCcCCEEEEc
Confidence 67888887765 7777888888888888888887776666644
No 3
>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}
Probab=24.06 E-value=18 Score=28.72 Aligned_cols=30 Identities=37% Similarity=0.531 Sum_probs=26.4
Q ss_pred CCCCCcccccceeeEEecChhhHHHHHHHh
Q 048800 411 ESQPSSKLDLSRFVLHLEGENELVEIIMKN 440 (755)
Q Consensus 411 s~~~~~K~DL~rFVLHLEGEeeLVe~M~k~ 440 (755)
+.+|+..+++||+.+-.+|+|+.+|-++|+
T Consensus 34 tv~~te~~~iSRmtivv~~~~~~i~qi~kQ 63 (77)
T d2pc6a2 34 SVAPTEDPTLSRMTLVTNGPDEIVEQITKQ 63 (77)
T ss_dssp EEEECSSTTEEEEEEEEEECHHHHHHHHHH
T ss_pred EEeccCCCCeEEEEEEEECCHHHHHHHHHH
Confidence 446777899999999999999999988875
No 4
>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}
Probab=21.42 E-value=20 Score=28.30 Aligned_cols=30 Identities=27% Similarity=0.472 Sum_probs=26.3
Q ss_pred CCCCCcccccceeeEEecChhhHHHHHHHh
Q 048800 411 ESQPSSKLDLSRFVLHLEGENELVEIIMKN 440 (755)
Q Consensus 411 s~~~~~K~DL~rFVLHLEGEeeLVe~M~k~ 440 (755)
+.+|+..++.||+.+-.+|+|+.+|-++|+
T Consensus 33 ~v~~te~~~iSR~tivv~~~~~~i~qi~kQ 62 (76)
T d2f1fa1 33 TVAPTDDPTLSRMTIQTVGDEKVLEQIEKQ 62 (76)
T ss_dssp EEEECSCSSEEEEEEEEESCHHHHHHHHHH
T ss_pred EEcccCCCCeeEEEEEEECCHHHHHHHHHH
Confidence 446778999999999999999999988774
No 5
>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}
Probab=20.43 E-value=21 Score=28.34 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=26.4
Q ss_pred CCCCCcccccceeeEEecChhhHHHHHHHh
Q 048800 411 ESQPSSKLDLSRFVLHLEGENELVEIIMKN 440 (755)
Q Consensus 411 s~~~~~K~DL~rFVLHLEGEeeLVe~M~k~ 440 (755)
+.+|+..+++||+.+-.+|+|+.++-++|+
T Consensus 35 ~v~~te~~~iSR~tivv~g~~~~i~qi~kQ 64 (78)
T d2fgca2 35 TVGESETPGLSRLVIMVKGDDKTIEQIEKQ 64 (78)
T ss_dssp EEEECSSTTEEEEEEEEEECTTHHHHHHHH
T ss_pred EEeecCCCCeEEEEEEEEcCHHHHHHHHHH
Confidence 446788999999999999999999998875
No 6
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.59 E-value=20 Score=26.43 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=20.4
Q ss_pred hhHHhhhhccCCCCCccccccceeeeh
Q 048800 294 LRWFTAINFRCPSRGKKICINKIFKVE 320 (755)
Q Consensus 294 ~RWF~Avn~rCP~~~kks~k~~~f~VE 320 (755)
.+||...+.+||.-|+.-.+ +.|+..
T Consensus 36 ~~~~~~~~~~CP~CR~~i~~-~~~~~~ 61 (65)
T d1g25a_ 36 DLLFVRGAGNCPECGTPLRK-SNFRVQ 61 (65)
T ss_dssp HHHHHTTSSSCTTTCCCCSS-CCCEEE
T ss_pred HHHhCcCcCCCCCCCcCccc-cccccc
Confidence 57998888899999998777 556653
No 7
>d2fi2a1 a.28.3.2 (A:37-128) Zinc finger protein 42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.67 E-value=20 Score=29.27 Aligned_cols=22 Identities=36% Similarity=0.684 Sum_probs=17.3
Q ss_pred cccccccccccccccccCCChHHHHHHHH
Q 048800 559 DLHHKWLDVNLRKLSLQADSPKEILEALV 587 (755)
Q Consensus 559 DLyhKWldVDLrKLS~Q~kspkE~Le~La 587 (755)
+|+|+||..| ..|.++++|-|+
T Consensus 31 eLc~~WL~pe-------~~tkeqilelLV 52 (92)
T d2fi2a1 31 ELCRQWLRPE-------VRSKEQMLELLV 52 (92)
T ss_dssp HHHHHHHCTT-------TCCHHHHHHHHH
T ss_pred HHHHHHcCCc-------ccCHHHHHHHHH
Confidence 4999998865 346788998887
No 8
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=15.38 E-value=20 Score=27.54 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcccccccccchhh
Q 048800 158 LMLVLLVIISFSALTVPINKQCLE 181 (755)
Q Consensus 158 lMlvllmilsfSAltvp~~K~y~e 181 (755)
||+++.+|-..+|+.+|...+|.+
T Consensus 6 LlVViaIIgILaaia~P~~~~~~~ 29 (158)
T d2pila_ 6 LMIVIAIVGILAAVALPAYQDYTA 29 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888899999998766654
No 9
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.73 E-value=12 Score=30.71 Aligned_cols=13 Identities=31% Similarity=0.646 Sum_probs=10.2
Q ss_pred eeecccccccccc
Q 048800 554 VWLQVDLHHKWLD 566 (755)
Q Consensus 554 VWlgVDLyhKWld 566 (755)
..--||.|++|+|
T Consensus 64 L~epiDVYs~WiD 76 (85)
T d1wiia_ 64 LSEPVDVYSDWID 76 (85)
T ss_dssp SCCTTHHHHHHHH
T ss_pred cCccHhHHHHHHH
Confidence 4557899999987
No 10
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=11.95 E-value=50 Score=25.58 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=23.9
Q ss_pred ecccccccccc---cc--cccccccCCChHHHHHHHHHH
Q 048800 556 LQVDLHHKWLD---VN--LRKLSLQADSPKEILEALVDA 589 (755)
Q Consensus 556 lgVDLyhKWld---VD--LrKLS~Q~kspkE~Le~Lad~ 589 (755)
-++|+.++|-. .+ -...+....+|+|+|+.+.++
T Consensus 38 t~~qck~RWrn~l~~~~~~~~~~~~~~~p~ell~~v~~~ 76 (83)
T d2ckxa1 38 TYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAA 76 (83)
T ss_dssp CHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhccCcccccCCCCCHHHHHHHHHH
Confidence 37899999954 22 233456667889999888774
Done!