BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048801
(1715 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 107/431 (24%), Positives = 169/431 (39%), Gaps = 71/431 (16%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV 293
Q ++ L GH +V+ F G+ + + SDD+ VK+W+ L + GH + +A
Sbjct: 48 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAF 106
Query: 294 SSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGT 353
S + +ASAS+D +++W +G + L GH+ +V +AFSP I S+SDD T
Sbjct: 107 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIA---SASDDKT 162
Query: 354 CRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFV 413
++W+ R Q +TG S + A++ +G
Sbjct: 163 VKLWN-RNGQL---------LQTLTG----------------HSSSVWGVAFSPDGQTIA 196
Query: 414 TGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GCAVASRSAMSDAF 471
+ S D ++W + L L+GH + V V FS G +AS S
Sbjct: 197 SASDDKTVKLW----------NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 246
Query: 472 KEENVPKFKNSWFCHD---NIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVXXXXX 528
+ + H N V DG I S V W R L
Sbjct: 247 LWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIA----SASDDKTVKLWNRNGQL------- 295
Query: 529 XXXXXXXXXXXXXXXXXXXVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSA 588
V + +S D + + +A D + +WN +G + +LTGHS+
Sbjct: 296 ---------LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQHLQTLTGHSS 345
Query: 589 SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDG-KFSPDGTSIVL 647
S + + P IA SA D +W+ G ++ G V G FSPDG +I
Sbjct: 346 SVWGVAFSPDGQTIA-SASDDKTVKLWNR-NGQLLQTL-TGHSSSVRGVAFSPDGQTIAS 402
Query: 648 SDDVGQIYLLN 658
+ D + L N
Sbjct: 403 ASDDKTVKLWN 413
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 103/426 (24%), Positives = 165/426 (38%), Gaps = 69/426 (16%)
Query: 238 KLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNN 297
+L H +V F G+ + + SDD+ VK+W+ L + GH + +A S +
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDG 69
Query: 298 TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW 357
+ASAS+D +++W +G + L GH+ +V +AFSP I S+SDD T ++W
Sbjct: 70 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIA---SASDDKTVKLW 125
Query: 358 DARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSS 417
+ R Q +TG S + A++ +G + S
Sbjct: 126 N-RNGQL---------LQTLTG----------------HSSSVWGVAFSPDGQTIASASD 159
Query: 418 DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GCAVASRSAMSDAFKEEN 475
D ++W + L L+GH + V V FS G +AS S
Sbjct: 160 DKTVKLW----------NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 209
Query: 476 VPKFKNSWFCHDNI---VTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVXXXXXXXXX 532
+ + H + V S DG I S V W R L
Sbjct: 210 NGQLLQTLTGHSSSVRGVAFSPDGQTIA----SASDDKTVKLWNRNGQL----------- 254
Query: 533 XXXXXXXXXXXXXXXVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYV 592
VN + + D + + +A D + +WN +G L+ +LTGHS+S +
Sbjct: 255 -----LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWG 308
Query: 593 LDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVG 652
+ P IA SA D +W+ G ++ + FSPDG +I + D
Sbjct: 309 VAFSPDGQTIA-SASDDKTVKLWNR-NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDK 366
Query: 653 QIYLLN 658
+ L N
Sbjct: 367 TVKLWN 372
Score = 80.5 bits (197), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 101/436 (23%), Positives = 168/436 (38%), Gaps = 81/436 (18%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV 293
Q ++ L GH +V F G+ + + SDD+ VK+W+ L + GH + +A
Sbjct: 212 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAF 270
Query: 294 SSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGT 353
+ +ASAS+D +++W +G + L GH+ +V +AFSP I S+SDD T
Sbjct: 271 RPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIA---SASDDKT 326
Query: 354 CRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFV 413
++W+ R Q+ +TG S + A++ +G
Sbjct: 327 VKLWN-RNGQH---------LQTLTG----------------HSSSVWGVAFSPDGQTIA 360
Query: 414 TGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GCAVASRSAMSDAF 471
+ S D ++W + L L+GH + V V FS G +AS S
Sbjct: 361 SASDDKTVKLW----------NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS------ 404
Query: 472 KEENVPKFKNSWFCHDNIVTCSRDGSAIIW---------IPRSRRSHGKVGRWTRAYHLK 522
++ K W + ++ S+ +W S V W R L
Sbjct: 405 -DDKTVKL---WNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQL- 459
Query: 523 VXXXXXXXXXXXXXXXXXXXXXXXXVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHS 582
V + +S D + + +A D + +WN +G L+ +
Sbjct: 460 ---------------LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT 503
Query: 583 LTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDG 642
LTGHS+S + P IA SA D +W+ G ++ + FSPDG
Sbjct: 504 LTGHSSSVRGVAFSPDGQTIA-SASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDG 561
Query: 643 TSIVLSDDVGQIYLLN 658
+I + + L N
Sbjct: 562 QTIASASSDKTVKLWN 577
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 80.9 bits (198), Expect = 6e-15, Method: Composition-based stats.
Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 33/205 (16%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
L GH AV F +G ++ + S D+L+KIW + GH+ I+D+A SS++
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
L+ SAS+D +++W + G + L+GH+ V F+P+ + I +S S D + RIWD
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWD 138
Query: 359 ARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSD 418
+ + LP D ++ +N +G++ V+ S D
Sbjct: 139 VKTGKCLKT--LPAHSDPVSA-----------------------VHFNRDGSLIVSSSYD 173
Query: 419 TFARVWSAC-----KSSVEDSEQPI 438
R+W K+ ++D P+
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPV 198
Score = 73.2 bits (178), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Query: 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH + +
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356
+ L+ S S D +R+W + G + L H+ V+A+ F+ S I +SSS DG CRI
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI---VSSSYDGLCRI 178
Query: 357 WDARYSQ 363
WD Q
Sbjct: 179 WDTASGQ 185
Score = 67.0 bits (162), Expect = 9e-11, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
+K L+GH + V+C F+ +++GS D V+IW ++T CL + H ++ + +
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 296 NNTLVASASNDFVIRVWRLPDGLPI-SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354
+ +L+ S+S D + R+W G + +++ V+ + FSP I L+++ D T
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI---LAATLDNTL 219
Query: 355 RIWD 358
++WD
Sbjct: 220 KLWD 223
Score = 47.8 bits (112), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRS---GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI 288
K + +K GH++ YC + S G+++++GS+D LV IW+++T + +GH +
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 285
Query: 289 TDLAVSSNNTLVASAS--NDFVIRVWR 313
A ++ASA+ ND I++++
Sbjct: 286 ISTACHPTENIIASAALENDKTIKLYK 312
Score = 44.3 bits (103), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG 607
++ + WS D+ +++A D + +W+ G + +L GHS + + +P + +S
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 608 YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666
+D +WD+ G ++ + F+ DG+ IV S G + +T G+ K
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 251 FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGD----ITDLAVSSNNTLVASASND 306
F +G++++ + D +K+W CL + GH+ + + +V+ +V S S D
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV-SGSED 261
Query: 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAI 342
++ +W L + L+GHT V + A P + I
Sbjct: 262 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 297
Score = 37.4 bits (85), Expect = 0.073, Method: Composition-based stats.
Identities = 62/280 (22%), Positives = 97/280 (34%), Gaps = 67/280 (23%)
Query: 323 LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXX 382
L GHT AV+++ FSP L SSS D +IW A Y K I+G
Sbjct: 22 LAGHTKAVSSVKFSPNGE---WLASSSADKLIKIWGA---------YDGKFEKTISGHKL 69
Query: 383 XXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442
I A++++ + V+ S D ++W L
Sbjct: 70 G----------------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---------LK 104
Query: 443 VLSGHENDVNYVQFSGCAVASRSAMSDAFKEE------NVPKFKNSWFCHDNIVTC---S 493
L GH N V F+ S +S +F E K + H + V+ +
Sbjct: 105 TLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Query: 494 RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVXXXXXXXXXXXXXXXXXXXXXXXXVNMIVW 553
RDGS I+ S G W A V+ + +
Sbjct: 162 RDGSLIV----SSSYDGLCRIWDTA--------------SGQCLKTLIDDDNPPVSFVKF 203
Query: 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVL 593
S + +++LAA +D + +W+ G + + TGH Y +
Sbjct: 204 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 80.9 bits (198), Expect = 6e-15, Method: Composition-based stats.
Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 33/205 (16%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
L GH AV F +G ++ + S D+L+KIW + GH+ I+D+A SS++
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
L+ SAS+D +++W + G + L+GH+ V F+P+ + I +S S D + RIWD
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWD 138
Query: 359 ARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSD 418
+ + LP D ++ +N +G++ V+ S D
Sbjct: 139 VKTGKCLKT--LPAHSDPVSA-----------------------VHFNRDGSLIVSSSYD 173
Query: 419 TFARVWSAC-----KSSVEDSEQPI 438
R+W K+ ++D P+
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPV 198
Score = 73.2 bits (178), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Query: 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH + +
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356
+ L+ S S D +R+W + G + L H+ V+A+ F+ S I +SSS DG CRI
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI---VSSSYDGLCRI 178
Query: 357 WDARYSQ 363
WD Q
Sbjct: 179 WDTASGQ 185
Score = 67.0 bits (162), Expect = 9e-11, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
+K L+GH + V+C F+ +++GS D V+IW ++T CL + H ++ + +
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 296 NNTLVASASNDFVIRVWRLPDGLPI-SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354
+ +L+ S+S D + R+W G + +++ V+ + FSP I L+++ D T
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI---LAATLDNTL 219
Query: 355 RIWD 358
++WD
Sbjct: 220 KLWD 223
Score = 47.0 bits (110), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRS---GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI 288
K + +K GH++ YC + S G+++++GS+D LV IW+++T + +GH +
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 285
Query: 289 TDLAVSSNNTLVASAS--NDFVIRVWR 313
A ++ASA+ ND I++++
Sbjct: 286 ISTACHPTENIIASAALENDKTIKLFK 312
Score = 43.9 bits (102), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG 607
++ + WS D+ +++A D + +W+ G + +L GHS + + +P + +S
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 608 YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666
+D +WD+ G ++ + F+ DG+ IV S G + +T G+ K
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 251 FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGD----ITDLAVSSNNTLVASASND 306
F +G++++ + D +K+W CL + GH+ + + +V+ +V S S D
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV-SGSED 261
Query: 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAI 342
++ +W L + L+GHT V + A P + I
Sbjct: 262 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 297
Score = 37.4 bits (85), Expect = 0.077, Method: Composition-based stats.
Identities = 62/280 (22%), Positives = 97/280 (34%), Gaps = 67/280 (23%)
Query: 323 LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXX 382
L GHT AV+++ FSP L SSS D +IW A Y K I+G
Sbjct: 22 LAGHTKAVSSVKFSPNGE---WLASSSADKLIKIWGA---------YDGKFEKTISGHKL 69
Query: 383 XXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442
I A++++ + V+ S D ++W L
Sbjct: 70 G----------------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---------LK 104
Query: 443 VLSGHENDVNYVQFSGCAVASRSAMSDAFKEE------NVPKFKNSWFCHDNIVTC---S 493
L GH N V F+ S +S +F E K + H + V+ +
Sbjct: 105 TLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Query: 494 RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVXXXXXXXXXXXXXXXXXXXXXXXXVNMIVW 553
RDGS I+ S G W A V+ + +
Sbjct: 162 RDGSLIV----SSSYDGLCRIWDTA--------------SGQCLKTLIDDDNPPVSFVKF 203
Query: 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVL 593
S + +++LAA +D + +W+ G + + TGH Y +
Sbjct: 204 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 80.9 bits (198), Expect = 6e-15, Method: Composition-based stats.
Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 33/205 (16%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
L GH AV F +G ++ + S D+L+KIW + GH+ I+D+A SS++
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
L+ SAS+D +++W + G + L+GH+ V F+P+ + I +S S D + RIWD
Sbjct: 78 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWD 134
Query: 359 ARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSD 418
+ + LP D ++ +N +G++ V+ S D
Sbjct: 135 VKTGKCLKT--LPAHSDPVSA-----------------------VHFNRDGSLIVSSSYD 169
Query: 419 TFARVWSAC-----KSSVEDSEQPI 438
R+W K+ ++D P+
Sbjct: 170 GLCRIWDTASGQCLKTLIDDDNPPV 194
Score = 72.8 bits (177), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Query: 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH + +
Sbjct: 58 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 117
Query: 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356
+ L+ S S D +R+W + G + L H+ V+A+ F+ S I +SSS DG CRI
Sbjct: 118 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI---VSSSYDGLCRI 174
Query: 357 WDARYSQ 363
WD Q
Sbjct: 175 WDTASGQ 181
Score = 67.0 bits (162), Expect = 9e-11, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
+K L+GH + V+C F+ +++GS D V+IW ++T CL + H ++ + +
Sbjct: 99 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 158
Query: 296 NNTLVASASNDFVIRVWRLPDGLPI-SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354
+ +L+ S+S D + R+W G + +++ V+ + FSP I L+++ D T
Sbjct: 159 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI---LAATLDNTL 215
Query: 355 RIWD 358
++WD
Sbjct: 216 KLWD 219
Score = 50.8 bits (120), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRS---GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI 288
K + +K GH++ YC + S G+++++GS+D LV IW+++T + +GH +
Sbjct: 222 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 281
Query: 289 TDLAVSSNNTLVASAS--NDFVIRVWR 313
A ++ASA+ ND I++W+
Sbjct: 282 ISTACHPTENIIASAALENDKTIKLWK 308
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 251 FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGD----ITDLAVSSNNTLVASASND 306
F +G++++ + D +K+W CL + GH+ + + +V+ +V S S D
Sbjct: 199 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV-SGSED 257
Query: 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P + I + +D T ++W +
Sbjct: 258 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS-AALENDKTIKLWKS 309
Score = 43.9 bits (102), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG 607
++ + WS D+ +++A D + +W+ G + +L GHS + + +P + +S
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 125
Query: 608 YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666
+D +WD+ G ++ + F+ DG+ IV S G + +T G+ K
Sbjct: 126 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 184
Score = 37.4 bits (85), Expect = 0.082, Method: Composition-based stats.
Identities = 62/280 (22%), Positives = 97/280 (34%), Gaps = 67/280 (23%)
Query: 323 LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXX 382
L GHT AV+++ FSP L SSS D +IW A Y K I+G
Sbjct: 18 LAGHTKAVSSVKFSPNGE---WLASSSADKLIKIWGA---------YDGKFEKTISGHKL 65
Query: 383 XXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442
I A++++ + V+ S D ++W L
Sbjct: 66 G----------------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---------LK 100
Query: 443 VLSGHENDVNYVQFSGCAVASRSAMSDAFKEE------NVPKFKNSWFCHDNIVTC---S 493
L GH N V F+ S +S +F E K + H + V+ +
Sbjct: 101 TLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 157
Query: 494 RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVXXXXXXXXXXXXXXXXXXXXXXXXVNMIVW 553
RDGS I+ S G W A V+ + +
Sbjct: 158 RDGSLIV----SSSYDGLCRIWDTA--------------SGQCLKTLIDDDNPPVSFVKF 199
Query: 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVL 593
S + +++LAA +D + +W+ G + + TGH Y +
Sbjct: 200 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 239
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 80.5 bits (197), Expect = 7e-15, Method: Composition-based stats.
Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 33/205 (16%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
L GH AV F +G ++ + S D+L+KIW + GH+ I+D+A SS++
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
L+ SAS+D +++W + G + L+GH+ V F+P+ + I +S S D + RIWD
Sbjct: 75 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWD 131
Query: 359 ARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSD 418
+ + LP D ++ +N +G++ V+ S D
Sbjct: 132 VKTGKCLKT--LPAHSDPVSA-----------------------VHFNRDGSLIVSSSYD 166
Query: 419 TFARVWSAC-----KSSVEDSEQPI 438
R+W K+ ++D P+
Sbjct: 167 GLCRIWDTASGQCLKTLIDDDNPPV 191
Score = 72.8 bits (177), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Query: 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH + +
Sbjct: 55 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 114
Query: 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356
+ L+ S S D +R+W + G + L H+ V+A+ F+ S I +SSS DG CRI
Sbjct: 115 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI---VSSSYDGLCRI 171
Query: 357 WDARYSQ 363
WD Q
Sbjct: 172 WDTASGQ 178
Score = 66.6 bits (161), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
+K L+GH + V+C F+ +++GS D V+IW ++T CL + H ++ + +
Sbjct: 96 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 155
Query: 296 NNTLVASASNDFVIRVWRLPDGLPI-SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354
+ +L+ S+S D + R+W G + +++ V+ + FSP I L+++ D T
Sbjct: 156 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI---LAATLDNTL 212
Query: 355 RIWD 358
++WD
Sbjct: 213 KLWD 216
Score = 50.8 bits (120), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRS---GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI 288
K + +K GH++ YC + S G+++++GS+D LV IW+++T + +GH +
Sbjct: 219 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 278
Query: 289 TDLAVSSNNTLVASAS--NDFVIRVWR 313
A ++ASA+ ND I++W+
Sbjct: 279 ISTACHPTENIIASAALENDKTIKLWK 305
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 251 FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGD----ITDLAVSSNNTLVASASND 306
F +G++++ + D +K+W CL + GH+ + + +V+ +V S S D
Sbjct: 196 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV-SGSED 254
Query: 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P + I + +D T ++W +
Sbjct: 255 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS-AALENDKTIKLWKS 306
Score = 43.9 bits (102), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG 607
++ + WS D+ +++A D + +W+ G + +L GHS + + +P + +S
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 122
Query: 608 YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666
+D +WD+ G ++ + F+ DG+ IV S G + +T G+ K
Sbjct: 123 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 181
Score = 37.0 bits (84), Expect = 0.088, Method: Composition-based stats.
Identities = 62/280 (22%), Positives = 97/280 (34%), Gaps = 67/280 (23%)
Query: 323 LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXX 382
L GHT AV+++ FSP L SSS D +IW A Y K I+G
Sbjct: 15 LAGHTKAVSSVKFSPNGE---WLASSSADKLIKIWGA---------YDGKFEKTISGHKL 62
Query: 383 XXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442
I A++++ + V+ S D ++W L
Sbjct: 63 G----------------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---------LK 97
Query: 443 VLSGHENDVNYVQFSGCAVASRSAMSDAFKEE------NVPKFKNSWFCHDNIVTC---S 493
L GH N V F+ S +S +F E K + H + V+ +
Sbjct: 98 TLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 154
Query: 494 RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVXXXXXXXXXXXXXXXXXXXXXXXXVNMIVW 553
RDGS I+ S G W A V+ + +
Sbjct: 155 RDGSLIV----SSSYDGLCRIWDTA--------------SGQCLKTLIDDDNPPVSFVKF 196
Query: 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVL 593
S + +++LAA +D + +W+ G + + TGH Y +
Sbjct: 197 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 236
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 80.5 bits (197), Expect = 8e-15, Method: Composition-based stats.
Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 33/205 (16%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
L GH AV F +G ++ + S D+L+KIW + GH+ I+D+A SS++
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
L+ SAS+D +++W + G + L+GH+ V F+P+ + I +S S D + RIWD
Sbjct: 84 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWD 140
Query: 359 ARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSD 418
+ + LP D ++ +N +G++ V+ S D
Sbjct: 141 VKTGKCLKT--LPAHSDPVSA-----------------------VHFNRDGSLIVSSSYD 175
Query: 419 TFARVWSAC-----KSSVEDSEQPI 438
R+W K+ ++D P+
Sbjct: 176 GLCRIWDTASGQCLKTLIDDDNPPV 200
Score = 72.8 bits (177), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Query: 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH + +
Sbjct: 64 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 123
Query: 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356
+ L+ S S D +R+W + G + L H+ V+A+ F+ S I +SSS DG CRI
Sbjct: 124 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI---VSSSYDGLCRI 180
Query: 357 WDARYSQ 363
WD Q
Sbjct: 181 WDTASGQ 187
Score = 66.6 bits (161), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
+K L+GH + V+C F+ +++GS D V+IW ++T CL + H ++ + +
Sbjct: 105 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 164
Query: 296 NNTLVASASNDFVIRVWRLPDGLPI-SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354
+ +L+ S+S D + R+W G + +++ V+ + FSP I L+++ D T
Sbjct: 165 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI---LAATLDNTL 221
Query: 355 RIWD 358
++WD
Sbjct: 222 KLWD 225
Score = 50.8 bits (120), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRS---GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI 288
K + +K GH++ YC + S G+++++GS+D LV IW+++T + +GH +
Sbjct: 228 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 287
Query: 289 TDLAVSSNNTLVASAS--NDFVIRVWR 313
A ++ASA+ ND I++W+
Sbjct: 288 ISTACHPTENIIASAALENDKTIKLWK 314
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 251 FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGD----ITDLAVSSNNTLVASASND 306
F +G++++ + D +K+W CL + GH+ + + +V+ +V S S D
Sbjct: 205 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV-SGSED 263
Query: 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P + I + +D T ++W +
Sbjct: 264 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS-AALENDKTIKLWKS 315
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG 607
++ + WS D+ +++A D + +W+ G + +L GHS + + +P + +S
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 131
Query: 608 YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666
+D +WD+ G ++ + F+ DG+ IV S G + +T G+ K
Sbjct: 132 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 190
Score = 37.0 bits (84), Expect = 0.098, Method: Composition-based stats.
Identities = 62/280 (22%), Positives = 97/280 (34%), Gaps = 67/280 (23%)
Query: 323 LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXX 382
L GHT AV+++ FSP L SSS D +IW A Y K I+G
Sbjct: 24 LAGHTKAVSSVKFSPNGE---WLASSSADKLIKIWGA---------YDGKFEKTISGHKL 71
Query: 383 XXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442
I A++++ + V+ S D ++W L
Sbjct: 72 G----------------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---------LK 106
Query: 443 VLSGHENDVNYVQFSGCAVASRSAMSDAFKEE------NVPKFKNSWFCHDNIVTC---S 493
L GH N V F+ S +S +F E K + H + V+ +
Sbjct: 107 TLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 163
Query: 494 RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVXXXXXXXXXXXXXXXXXXXXXXXXVNMIVW 553
RDGS I+ S G W A V+ + +
Sbjct: 164 RDGSLIV----SSSYDGLCRIWDTA--------------SGQCLKTLIDDDNPPVSFVKF 205
Query: 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVL 593
S + +++LAA +D + +W+ G + + TGH Y +
Sbjct: 206 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 245
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 80.5 bits (197), Expect = 8e-15, Method: Composition-based stats.
Identities = 56/220 (25%), Positives = 99/220 (45%), Gaps = 33/220 (15%)
Query: 224 AKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRG 283
+KP+ + + L GH AV F +G ++ + S D+L+KIW + G
Sbjct: 7 SKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 66
Query: 284 HEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIY 343
H+ I+D+A SS++ L+ SAS+D +++W + G + L+GH+ V F+P+ + I
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI- 125
Query: 344 QLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCC 403
+S S D + RIWD + LP D ++
Sbjct: 126 --VSGSFDESVRIWDVKTGMCLKT--LPAHSDPVSA-----------------------V 158
Query: 404 AYNANGTVFVTGSSDTFARVWSAC-----KSSVEDSEQPI 438
+N +G++ V+ S D R+W K+ ++D P+
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Score = 67.8 bits (164), Expect = 6e-11, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
+K L+GH + V+C F+ +++GS D V+IW ++T CL + H ++ + +
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 296 NNTLVASASNDFVIRVWRLPDGLPI-SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354
+ +L+ S+S D + R+W G + +++ V+ + FSP I L+++ D T
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI---LAATLDNTL 219
Query: 355 RIWD 358
++WD
Sbjct: 220 KLWD 223
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 29/167 (17%)
Query: 283 GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAI 342
GH ++ + S N +AS+S D +I++W DG + GH ++ +A+S +
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL- 82
Query: 343 YQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILC 402
L+S+SDD T +IWD +GK S+ + C
Sbjct: 83 --LVSASDDKTLKIWDVS-----------------SGKCLKTLKG--------HSNYVFC 115
Query: 403 CAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN 449
C +N + V+GS D R+W K+ + P H V + H N
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIWDV-KTGMCLKTLPAHSDPVSAVHFN 161
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRS---GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI 288
K + +K GH++ YC + S G+++++GS+D +V IW+++T + +GH +
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVV 285
Query: 289 TDLAVSSNNTLVASAS--NDFVIRVWR 313
A ++ASA+ ND I++W+
Sbjct: 286 ISTACHPTENIIASAALENDKTIKLWK 312
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 251 FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGD----ITDLAVSSNNTLVASASND 306
F +G++++ + D +K+W CL + GH+ + + +V+ +V S S D
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV-SGSED 261
Query: 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P + I + +D T ++W +
Sbjct: 262 NMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS-AALENDKTIKLWKS 313
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG 607
++ + WS D+ +++A D + +W+ G + +L GHS + + +P + +S
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 608 YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666
+D +WD+ G ++ + F+ DG+ IV S G + +T G+ K
Sbjct: 130 FDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Score = 35.4 bits (80), Expect = 0.25, Method: Composition-based stats.
Identities = 62/280 (22%), Positives = 97/280 (34%), Gaps = 67/280 (23%)
Query: 323 LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXX 382
L GHT AV+++ FSP L SSS D +IW A Y K I+G
Sbjct: 22 LAGHTKAVSSVKFSPNGE---WLASSSADKLIKIWGA---------YDGKFEKTISGHKL 69
Query: 383 XXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442
I A++++ + V+ S D ++W L
Sbjct: 70 G----------------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---------LK 104
Query: 443 VLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFC------HDNIVTC---S 493
L GH N V F+ S +S +F E + C H + V+ +
Sbjct: 105 TLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN 161
Query: 494 RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVXXXXXXXXXXXXXXXXXXXXXXXXVNMIVW 553
RDGS I+ S G W A V+ + +
Sbjct: 162 RDGSLIV----SSSYDGLCRIWDTA--------------SGQCLKTLIDDDNPPVSFVKF 203
Query: 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVL 593
S + +++LAA +D + +W+ G + + TGH Y +
Sbjct: 204 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 80.5 bits (197), Expect = 8e-15, Method: Composition-based stats.
Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 33/205 (16%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
L GH AV F +G ++ + S D+L+KIW + GH+ I+D+A SS++
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
L+ SAS+D +++W + G + L+GH+ V F+P+ + I +S S D + RIWD
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWD 135
Query: 359 ARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSD 418
+ + LP D ++ +N +G++ V+ S D
Sbjct: 136 VKTGKCLKT--LPAHSDPVSA-----------------------VHFNRDGSLIVSSSYD 170
Query: 419 TFARVWSAC-----KSSVEDSEQPI 438
R+W K+ ++D P+
Sbjct: 171 GLCRIWDTASGQCLKTLIDDDNPPV 195
Score = 72.8 bits (177), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Query: 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH + +
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 118
Query: 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356
+ L+ S S D +R+W + G + L H+ V+A+ F+ S I +SSS DG CRI
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI---VSSSYDGLCRI 175
Query: 357 WDARYSQ 363
WD Q
Sbjct: 176 WDTASGQ 182
Score = 66.6 bits (161), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
+K L+GH + V+C F+ +++GS D V+IW ++T CL + H ++ + +
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 296 NNTLVASASNDFVIRVWRLPDGLPI-SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354
+ +L+ S+S D + R+W G + +++ V+ + FSP I L+++ D T
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI---LAATLDNTL 216
Query: 355 RIWD 358
++WD
Sbjct: 217 KLWD 220
Score = 50.8 bits (120), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRS---GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI 288
K + +K GH++ YC + S G+++++GS+D LV IW+++T + +GH +
Sbjct: 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 282
Query: 289 TDLAVSSNNTLVASAS--NDFVIRVWR 313
A ++ASA+ ND I++W+
Sbjct: 283 ISTACHPTENIIASAALENDKTIKLWK 309
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 251 FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGD----ITDLAVSSNNTLVASASND 306
F +G++++ + D +K+W CL + GH+ + + +V+ +V S S D
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV-SGSED 258
Query: 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P + I + +D T ++W +
Sbjct: 259 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS-AALENDKTIKLWKS 310
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG 607
++ + WS D+ +++A D + +W+ G + +L GHS + + +P + +S
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 126
Query: 608 YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666
+D +WD+ G ++ + F+ DG+ IV S G + +T G+ K
Sbjct: 127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Score = 37.0 bits (84), Expect = 0.099, Method: Composition-based stats.
Identities = 62/280 (22%), Positives = 97/280 (34%), Gaps = 67/280 (23%)
Query: 323 LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXX 382
L GHT AV+++ FSP L SSS D +IW A Y K I+G
Sbjct: 19 LAGHTKAVSSVKFSPNGE---WLASSSADKLIKIWGA---------YDGKFEKTISGHKL 66
Query: 383 XXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442
I A++++ + V+ S D ++W L
Sbjct: 67 G----------------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---------LK 101
Query: 443 VLSGHENDVNYVQFSGCAVASRSAMSDAFKEE------NVPKFKNSWFCHDNIVTC---S 493
L GH N V F+ S +S +F E K + H + V+ +
Sbjct: 102 TLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Query: 494 RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVXXXXXXXXXXXXXXXXXXXXXXXXVNMIVW 553
RDGS I+ S G W A V+ + +
Sbjct: 159 RDGSLIV----SSSYDGLCRIWDTA--------------SGQCLKTLIDDDNPPVSFVKF 200
Query: 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVL 593
S + +++LAA +D + +W+ G + + TGH Y +
Sbjct: 201 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 80.5 bits (197), Expect = 8e-15, Method: Composition-based stats.
Identities = 56/220 (25%), Positives = 99/220 (45%), Gaps = 33/220 (15%)
Query: 224 AKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRG 283
+KP+ + + L GH AV F +G ++ + S D+L+KIW + G
Sbjct: 7 SKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 66
Query: 284 HEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIY 343
H+ I+D+A SS++ L+ SAS+D +++W + G + L+GH+ V F+P+ + I
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI- 125
Query: 344 QLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCC 403
+S S D + RIWD + LP D ++
Sbjct: 126 --VSGSFDESVRIWDVKTGMCLKT--LPAHSDPVSA-----------------------V 158
Query: 404 AYNANGTVFVTGSSDTFARVWSAC-----KSSVEDSEQPI 438
+N +G++ V+ S D R+W K+ ++D P+
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Score = 65.5 bits (158), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
+K L+GH + V+C F+ +++GS D V+IW ++T CL + H ++ + +
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 296 NNTLVASASNDFVIRVWRLPDGLPI-SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354
+ +L+ S+S D + R+W G + +++ V+ + FSP I L+++ D
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI---LAATLDNDL 219
Query: 355 RIWD 358
++WD
Sbjct: 220 KLWD 223
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 29/167 (17%)
Query: 283 GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAI 342
GH ++ + S N +AS+S D +I++W DG + GH ++ +A+S +
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL- 82
Query: 343 YQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILC 402
L+S+SDD T +IWD +GK S+ + C
Sbjct: 83 --LVSASDDKTLKIWDVS-----------------SGKCLKTLKG--------HSNYVFC 115
Query: 403 CAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN 449
C +N + V+GS D R+W K+ + P H V + H N
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIWDV-KTGMCLKTLPAHSDPVSAVHFN 161
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRS---GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI 288
K + +K GH++ YC + S G+++++GS+D +V IW+++T + +GH +
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVV 285
Query: 289 TDLAVSSNNTLVASAS--NDFVIRVWR 313
A ++ASA+ ND I++W+
Sbjct: 286 ISTACHPTENIIASAALENDKTIKLWK 312
Score = 44.7 bits (104), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 251 FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGD----ITDLAVSSNNTLVASASND 306
F +G++++ + D +K+W CL + GH+ + + +V+ +V S S D
Sbjct: 203 FSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV-SGSED 261
Query: 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P + I + +D T ++W +
Sbjct: 262 NMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS-AALENDKTIKLWKS 313
Score = 43.9 bits (102), Expect = 9e-04, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG 607
++ + WS D+ +++A D + +W+ G + +L GHS + + +P + +S
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 608 YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666
+D +WD+ G ++ + F+ DG+ IV S G + +T G+ K
Sbjct: 130 FDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Score = 35.4 bits (80), Expect = 0.29, Method: Composition-based stats.
Identities = 62/280 (22%), Positives = 97/280 (34%), Gaps = 67/280 (23%)
Query: 323 LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXX 382
L GHT AV+++ FSP L SSS D +IW A Y K I+G
Sbjct: 22 LAGHTKAVSSVKFSPNGE---WLASSSADKLIKIWGA---------YDGKFEKTISGHKL 69
Query: 383 XXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442
I A++++ + V+ S D ++W L
Sbjct: 70 G----------------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---------LK 104
Query: 443 VLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFC------HDNIVTC---S 493
L GH N V F+ S +S +F E + C H + V+ +
Sbjct: 105 TLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN 161
Query: 494 RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVXXXXXXXXXXXXXXXXXXXXXXXXVNMIVW 553
RDGS I+ S G W A V+ + +
Sbjct: 162 RDGSLIV----SSSYDGLCRIWDTA--------------SGQCLKTLIDDDNPPVSFVKF 203
Query: 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVL 593
S + +++LAA +D + +W+ G + + TGH Y +
Sbjct: 204 SPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCI 243
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 80.5 bits (197), Expect = 8e-15, Method: Composition-based stats.
Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 33/205 (16%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
L GH AV F +G ++ + S D+L+KIW + GH+ I+D+A SS++
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
L+ SAS+D +++W + G + L+GH+ V F+P+ + I +S S D + RIWD
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWD 135
Query: 359 ARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSD 418
+ + LP D ++ +N +G++ V+ S D
Sbjct: 136 VKTGKCLKT--LPAHSDPVSA-----------------------VHFNRDGSLIVSSSYD 170
Query: 419 TFARVWSAC-----KSSVEDSEQPI 438
R+W K+ ++D P+
Sbjct: 171 GLCRIWDTASGQCLKTLIDDDNPPV 195
Score = 72.8 bits (177), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Query: 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH + +
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 118
Query: 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356
+ L+ S S D +R+W + G + L H+ V+A+ F+ S I +SSS DG CRI
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI---VSSSYDGLCRI 175
Query: 357 WDARYSQ 363
WD Q
Sbjct: 176 WDTASGQ 182
Score = 66.6 bits (161), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
+K L+GH + V+C F+ +++GS D V+IW ++T CL + H ++ + +
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 296 NNTLVASASNDFVIRVWRLPDGLPI-SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354
+ +L+ S+S D + R+W G + +++ V+ + FSP I L+++ D T
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI---LAATLDNTL 216
Query: 355 RIWD 358
++WD
Sbjct: 217 KLWD 220
Score = 50.8 bits (120), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRS---GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI 288
K + +K GH++ YC + S G+++++GS+D LV IW+++T + +GH +
Sbjct: 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 282
Query: 289 TDLAVSSNNTLVASAS--NDFVIRVWR 313
A ++ASA+ ND I++W+
Sbjct: 283 ISTACHPTENIIASAALENDKTIKLWK 309
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 251 FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGD----ITDLAVSSNNTLVASASND 306
F +G++++ + D +K+W CL + GH+ + + +V+ +V S S D
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV-SGSED 258
Query: 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P + I + +D T ++W +
Sbjct: 259 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS-AALENDKTIKLWKS 310
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG 607
++ + WS D+ +++A D + +W+ G + +L GHS + + +P + +S
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 126
Query: 608 YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666
+D +WD+ G ++ + F+ DG+ IV S G + +T G+ K
Sbjct: 127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Score = 37.0 bits (84), Expect = 0.099, Method: Composition-based stats.
Identities = 62/280 (22%), Positives = 97/280 (34%), Gaps = 67/280 (23%)
Query: 323 LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXX 382
L GHT AV+++ FSP L SSS D +IW A Y K I+G
Sbjct: 19 LAGHTKAVSSVKFSPNGE---WLASSSADKLIKIWGA---------YDGKFEKTISGHKL 66
Query: 383 XXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442
I A++++ + V+ S D ++W L
Sbjct: 67 G----------------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---------LK 101
Query: 443 VLSGHENDVNYVQFSGCAVASRSAMSDAFKEE------NVPKFKNSWFCHDNIVTC---S 493
L GH N V F+ S +S +F E K + H + V+ +
Sbjct: 102 TLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Query: 494 RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVXXXXXXXXXXXXXXXXXXXXXXXXVNMIVW 553
RDGS I+ S G W A V+ + +
Sbjct: 159 RDGSLIV----SSSYDGLCRIWDTA--------------SGQCLKTLIDDDNPPVSFVKF 200
Query: 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVL 593
S + +++LAA +D + +W+ G + + TGH Y +
Sbjct: 201 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 80.5 bits (197), Expect = 8e-15, Method: Composition-based stats.
Identities = 54/205 (26%), Positives = 93/205 (45%), Gaps = 33/205 (16%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
L GH AV F +G ++ S D+L+KIW + GH+ I+D+A SS++
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
L+ SAS+D +++W + G + L+GH+ V F+P+ + I +S S D + RIWD
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWD 138
Query: 359 ARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSD 418
+ + LP D ++ +N +G++ V+ S D
Sbjct: 139 VKTGKCLKT--LPAHSDPVSA-----------------------VHFNRDGSLIVSSSYD 173
Query: 419 TFARVWSAC-----KSSVEDSEQPI 438
R+W K+ ++D P+
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPV 198
Score = 73.2 bits (178), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Query: 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH + +
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356
+ L+ S S D +R+W + G + L H+ V+A+ F+ S I +SSS DG CRI
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI---VSSSYDGLCRI 178
Query: 357 WDARYSQ 363
WD Q
Sbjct: 179 WDTASGQ 185
Score = 67.0 bits (162), Expect = 9e-11, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
+K L+GH + V+C F+ +++GS D V+IW ++T CL + H ++ + +
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 296 NNTLVASASNDFVIRVWRLPDGLPI-SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354
+ +L+ S+S D + R+W G + +++ V+ + FSP I L+++ D T
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI---LAATLDNTL 219
Query: 355 RIWD 358
++WD
Sbjct: 220 KLWD 223
Score = 51.2 bits (121), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRS---GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI 288
K + +K GH++ YC + S G+++++GS+D LV IW+++T + +GH +
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 285
Query: 289 TDLAVSSNNTLVASAS--NDFVIRVWR 313
A ++ASA+ ND I++W+
Sbjct: 286 ISTACHPTENIIASAALENDKTIKLWK 312
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 251 FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGD----ITDLAVSSNNTLVASASND 306
F +G++++ + D +K+W CL + GH+ + + +V+ +V S S D
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV-SGSED 261
Query: 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P + I + +D T ++W +
Sbjct: 262 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS-AALENDKTIKLWKS 313
Score = 44.3 bits (103), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG 607
++ + WS D+ +++A D + +W+ G + +L GHS + + +P + +S
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 608 YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666
+D +WD+ G ++ + F+ DG+ IV S G + +T G+ K
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Score = 36.2 bits (82), Expect = 0.16, Method: Composition-based stats.
Identities = 61/280 (21%), Positives = 97/280 (34%), Gaps = 67/280 (23%)
Query: 323 LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXX 382
L GHT AV+++ FSP L +SS D +IW A Y K I+G
Sbjct: 22 LAGHTKAVSSVKFSPNGE---WLAASSADKLIKIWGA---------YDGKFEKTISGHKL 69
Query: 383 XXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442
I A++++ + V+ S D ++W L
Sbjct: 70 G----------------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---------LK 104
Query: 443 VLSGHENDVNYVQFSGCAVASRSAMSDAFKEE------NVPKFKNSWFCHDNIVTC---S 493
L GH N V F+ S +S +F E K + H + V+ +
Sbjct: 105 TLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Query: 494 RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVXXXXXXXXXXXXXXXXXXXXXXXXVNMIVW 553
RDGS I+ S G W A V+ + +
Sbjct: 162 RDGSLIV----SSSYDGLCRIWDTA--------------SGQCLKTLIDDDNPPVSFVKF 203
Query: 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVL 593
S + +++LAA +D + +W+ G + + TGH Y +
Sbjct: 204 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 80.1 bits (196), Expect = 9e-15, Method: Composition-based stats.
Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 33/205 (16%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
L GH AV F +G ++ + S D+L+KIW + GH+ I+D+A SS++
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
L+ SAS+D +++W + G + L+GH+ V F+P+ + I +S S D + RIWD
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWD 141
Query: 359 ARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSD 418
+ + LP D ++ +N +G++ V+ S D
Sbjct: 142 VKTGKCLKT--LPAHSDPVSA-----------------------VHFNRDGSLIVSSSYD 176
Query: 419 TFARVWSAC-----KSSVEDSEQPI 438
R+W K+ ++D P+
Sbjct: 177 GLCRIWDTASGQCLKTLIDDDNPPV 201
Score = 72.8 bits (177), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Query: 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH + +
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356
+ L+ S S D +R+W + G + L H+ V+A+ F+ S I +SSS DG CRI
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI---VSSSYDGLCRI 181
Query: 357 WDARYSQ 363
WD Q
Sbjct: 182 WDTASGQ 188
Score = 66.6 bits (161), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
+K L+GH + V+C F+ +++GS D V+IW ++T CL + H ++ + +
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 296 NNTLVASASNDFVIRVWRLPDGLPI-SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354
+ +L+ S+S D + R+W G + +++ V+ + FSP I L+++ D T
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI---LAATLDNTL 222
Query: 355 RIWD 358
++WD
Sbjct: 223 KLWD 226
Score = 50.8 bits (120), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRS---GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI 288
K + +K GH++ YC + S G+++++GS+D LV IW+++T + +GH +
Sbjct: 229 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 288
Query: 289 TDLAVSSNNTLVASAS--NDFVIRVWR 313
A ++ASA+ ND I++W+
Sbjct: 289 ISTACHPTENIIASAALENDKTIKLWK 315
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 251 FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGD----ITDLAVSSNNTLVASASND 306
F +G++++ + D +K+W CL + GH+ + + +V+ +V S S D
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV-SGSED 264
Query: 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P + I + +D T ++W +
Sbjct: 265 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS-AALENDKTIKLWKS 316
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG 607
++ + WS D+ +++A D + +W+ G + +L GHS + + +P + +S
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 132
Query: 608 YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666
+D +WD+ G ++ + F+ DG+ IV S G + +T G+ K
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Score = 37.0 bits (84), Expect = 0.11, Method: Composition-based stats.
Identities = 62/280 (22%), Positives = 97/280 (34%), Gaps = 67/280 (23%)
Query: 323 LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXX 382
L GHT AV+++ FSP L SSS D +IW A Y K I+G
Sbjct: 25 LAGHTKAVSSVKFSPNGE---WLASSSADKLIKIWGA---------YDGKFEKTISGHKL 72
Query: 383 XXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442
I A++++ + V+ S D ++W L
Sbjct: 73 G----------------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---------LK 107
Query: 443 VLSGHENDVNYVQFSGCAVASRSAMSDAFKEE------NVPKFKNSWFCHDNIVTC---S 493
L GH N V F+ S +S +F E K + H + V+ +
Sbjct: 108 TLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 494 RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVXXXXXXXXXXXXXXXXXXXXXXXXVNMIVW 553
RDGS I+ S G W A V+ + +
Sbjct: 165 RDGSLIV----SSSYDGLCRIWDTA--------------SGQCLKTLIDDDNPPVSFVKF 206
Query: 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVL 593
S + +++LAA +D + +W+ G + + TGH Y +
Sbjct: 207 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 80.1 bits (196), Expect = 9e-15, Method: Composition-based stats.
Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 33/205 (16%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
L GH AV F +G ++ + S D+L+KIW + GH+ I+D+A SS++
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
L+ SAS+D +++W + G + L+GH+ V F+P+ + I +S S D + RIWD
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWD 141
Query: 359 ARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSD 418
+ + LP D ++ +N +G++ V+ S D
Sbjct: 142 VKTGKCLKT--LPAHSDPVSA-----------------------VHFNRDGSLIVSSSYD 176
Query: 419 TFARVWSAC-----KSSVEDSEQPI 438
R+W K+ ++D P+
Sbjct: 177 GLCRIWDTASGQCLKTLIDDDNPPV 201
Score = 72.8 bits (177), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Query: 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH + +
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356
+ L+ S S D +R+W + G + L H+ V+A+ F+ S I +SSS DG CRI
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI---VSSSYDGLCRI 181
Query: 357 WDARYSQ 363
WD Q
Sbjct: 182 WDTASGQ 188
Score = 66.6 bits (161), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
+K L+GH + V+C F+ +++GS D V+IW ++T CL + H ++ + +
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 296 NNTLVASASNDFVIRVWRLPDGLPI-SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354
+ +L+ S+S D + R+W G + +++ V+ + FSP I L+++ D T
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI---LAATLDNTL 222
Query: 355 RIWD 358
++WD
Sbjct: 223 KLWD 226
Score = 50.8 bits (120), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRS---GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI 288
K + +K GH++ YC + S G+++++GS+D LV IW+++T + +GH +
Sbjct: 229 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 288
Query: 289 TDLAVSSNNTLVASAS--NDFVIRVWR 313
A ++ASA+ ND I++W+
Sbjct: 289 ISTACHPTENIIASAALENDKTIKLWK 315
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 251 FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGD----ITDLAVSSNNTLVASASND 306
F +G++++ + D +K+W CL + GH+ + + +V+ +V S S D
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV-SGSED 264
Query: 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P + I + +D T ++W +
Sbjct: 265 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS-AALENDKTIKLWKS 316
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG 607
++ + WS D+ +++A D + +W+ G + +L GHS + + +P + +S
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 132
Query: 608 YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666
+D +WD+ G ++ + F+ DG+ IV S G + +T G+ K
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Score = 37.0 bits (84), Expect = 0.11, Method: Composition-based stats.
Identities = 62/280 (22%), Positives = 97/280 (34%), Gaps = 67/280 (23%)
Query: 323 LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXX 382
L GHT AV+++ FSP L SSS D +IW A Y K I+G
Sbjct: 25 LAGHTKAVSSVKFSPNGE---WLASSSADKLIKIWGA---------YDGKFEKTISGHKL 72
Query: 383 XXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442
I A++++ + V+ S D ++W L
Sbjct: 73 G----------------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---------LK 107
Query: 443 VLSGHENDVNYVQFSGCAVASRSAMSDAFKEE------NVPKFKNSWFCHDNIVTC---S 493
L GH N V F+ S +S +F E K + H + V+ +
Sbjct: 108 TLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 494 RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVXXXXXXXXXXXXXXXXXXXXXXXXVNMIVW 553
RDGS I+ S G W A V+ + +
Sbjct: 165 RDGSLIV----SSSYDGLCRIWDTA--------------SGQCLKTLIDDDNPPVSFVKF 206
Query: 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVL 593
S + +++LAA +D + +W+ G + + TGH Y +
Sbjct: 207 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 80.1 bits (196), Expect = 9e-15, Method: Composition-based stats.
Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 33/205 (16%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
L GH AV F +G ++ + S D+L+KIW + GH+ I+D+A SS++
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
L+ SAS+D +++W + G + L+GH+ V F+P+ + I +S S D + RIWD
Sbjct: 96 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWD 152
Query: 359 ARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSD 418
+ + LP D ++ +N +G++ V+ S D
Sbjct: 153 VKTGKCLKT--LPAHSDPVSA-----------------------VHFNRDGSLIVSSSYD 187
Query: 419 TFARVWSAC-----KSSVEDSEQPI 438
R+W K+ ++D P+
Sbjct: 188 GLCRIWDTASGQCLKTLIDDDNPPV 212
Score = 72.8 bits (177), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Query: 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH + +
Sbjct: 76 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 135
Query: 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356
+ L+ S S D +R+W + G + L H+ V+A+ F+ S I +SSS DG CRI
Sbjct: 136 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI---VSSSYDGLCRI 192
Query: 357 WDARYSQ 363
WD Q
Sbjct: 193 WDTASGQ 199
Score = 66.6 bits (161), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
+K L+GH + V+C F+ +++GS D V+IW ++T CL + H ++ + +
Sbjct: 117 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 176
Query: 296 NNTLVASASNDFVIRVWRLPDGLPI-SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354
+ +L+ S+S D + R+W G + +++ V+ + FSP I L+++ D T
Sbjct: 177 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI---LAATLDNTL 233
Query: 355 RIWD 358
++WD
Sbjct: 234 KLWD 237
Score = 50.8 bits (120), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRS---GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI 288
K + +K GH++ YC + S G+++++GS+D LV IW+++T + +GH +
Sbjct: 240 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 299
Query: 289 TDLAVSSNNTLVASAS--NDFVIRVWR 313
A ++ASA+ ND I++W+
Sbjct: 300 ISTACHPTENIIASAALENDKTIKLWK 326
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 251 FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGD----ITDLAVSSNNTLVASASND 306
F +G++++ + D +K+W CL + GH+ + + +V+ +V S S D
Sbjct: 217 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV-SGSED 275
Query: 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P + I + +D T ++W +
Sbjct: 276 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS-AALENDKTIKLWKS 327
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG 607
++ + WS D+ +++A D + +W+ G + +L GHS + + +P + +S
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 143
Query: 608 YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666
+D +WD+ G ++ + F+ DG+ IV S G + +T G+ K
Sbjct: 144 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 202
Score = 37.0 bits (84), Expect = 0.11, Method: Composition-based stats.
Identities = 62/280 (22%), Positives = 97/280 (34%), Gaps = 67/280 (23%)
Query: 323 LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXX 382
L GHT AV+++ FSP L SSS D +IW A Y K I+G
Sbjct: 36 LAGHTKAVSSVKFSPNGE---WLASSSADKLIKIWGA---------YDGKFEKTISGHKL 83
Query: 383 XXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442
I A++++ + V+ S D ++W L
Sbjct: 84 G----------------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---------LK 118
Query: 443 VLSGHENDVNYVQFSGCAVASRSAMSDAFKEE------NVPKFKNSWFCHDNIVTC---S 493
L GH N V F+ S +S +F E K + H + V+ +
Sbjct: 119 TLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 175
Query: 494 RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVXXXXXXXXXXXXXXXXXXXXXXXXVNMIVW 553
RDGS I+ S G W A V+ + +
Sbjct: 176 RDGSLIV----SSSYDGLCRIWDTA--------------SGQCLKTLIDDDNPPVSFVKF 217
Query: 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVL 593
S + +++LAA +D + +W+ G + + TGH Y +
Sbjct: 218 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 257
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 80.1 bits (196), Expect = 1e-14, Method: Composition-based stats.
Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 33/205 (16%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
L GH AV F +G ++ + S D+L+KIW + GH+ I+D+A SS++
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
L+ SAS+D +++W + G + L+GH+ V F+P+ + I +S S D + RIWD
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWD 141
Query: 359 ARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSD 418
+ + LP D ++ +N +G++ V+ S D
Sbjct: 142 VKTGKCLKT--LPAHSDPVSA-----------------------VHFNRDGSLIVSSSYD 176
Query: 419 TFARVWSAC-----KSSVEDSEQPI 438
R+W K+ ++D P+
Sbjct: 177 GLCRIWDTASGQCLKTLIDDDNPPV 201
Score = 72.4 bits (176), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Query: 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH + +
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356
+ L+ S S D +R+W + G + L H+ V+A+ F+ S I +SSS DG CRI
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI---VSSSYDGLCRI 181
Query: 357 WDARYSQ 363
WD Q
Sbjct: 182 WDTASGQ 188
Score = 66.6 bits (161), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
+K L+GH + V+C F+ +++GS D V+IW ++T CL + H ++ + +
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 296 NNTLVASASNDFVIRVWRLPDGLPI-SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354
+ +L+ S+S D + R+W G + +++ V+ + FSP I L+++ D T
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI---LAATLDNTL 222
Query: 355 RIWD 358
++WD
Sbjct: 223 KLWD 226
Score = 50.8 bits (120), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRS---GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI 288
K + +K GH++ YC + S G+++++GS+D LV IW+++T + +GH +
Sbjct: 229 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 288
Query: 289 TDLAVSSNNTLVASAS--NDFVIRVWR 313
A ++ASA+ ND I++W+
Sbjct: 289 ISTACHPTENIIASAALENDKTIKLWK 315
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 251 FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGD----ITDLAVSSNNTLVASASND 306
F +G++++ + D +K+W CL + GH+ + + +V+ +V S S D
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV-SGSED 264
Query: 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P + I + +D T ++W +
Sbjct: 265 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS-AALENDKTIKLWKS 316
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG 607
++ + WS D+ +++A D + +W+ G + +L GHS + + +P + +S
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 132
Query: 608 YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666
+D +WD+ G ++ + F+ DG+ IV S G + +T G+ K
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Score = 36.6 bits (83), Expect = 0.12, Method: Composition-based stats.
Identities = 62/280 (22%), Positives = 97/280 (34%), Gaps = 67/280 (23%)
Query: 323 LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXX 382
L GHT AV+++ FSP L SSS D +IW A Y K I+G
Sbjct: 25 LAGHTKAVSSVKFSPNGE---WLASSSADKLIKIWGA---------YDGKFEKTISGHKL 72
Query: 383 XXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442
I A++++ + V+ S D ++W L
Sbjct: 73 G----------------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---------LK 107
Query: 443 VLSGHENDVNYVQFSGCAVASRSAMSDAFKEE------NVPKFKNSWFCHDNIVTC---S 493
L GH N V F+ S +S +F E K + H + V+ +
Sbjct: 108 TLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 494 RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVXXXXXXXXXXXXXXXXXXXXXXXXVNMIVW 553
RDGS I+ S G W A V+ + +
Sbjct: 165 RDGSLIV----SSSYDGLCRIWDTA--------------SGQCLKTLIDDDNPPVSFVKF 206
Query: 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVL 593
S + +++LAA +D + +W+ G + + TGH Y +
Sbjct: 207 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 80.1 bits (196), Expect = 1e-14, Method: Composition-based stats.
Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 33/205 (16%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
L GH AV F +G ++ + S D+L+KIW + GH+ I+D+A SS++
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
L+ SAS+D +++W + G + L+GH+ V F+P+ + I +S S D + RIWD
Sbjct: 80 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWD 136
Query: 359 ARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSD 418
+ + LP D ++ +N +G++ V+ S D
Sbjct: 137 VKTGKCLKT--LPAHSDPVSA-----------------------VHFNRDGSLIVSSSYD 171
Query: 419 TFARVWSAC-----KSSVEDSEQPI 438
R+W K+ ++D P+
Sbjct: 172 GLCRIWDTASGQCLKTLIDDDNPPV 196
Score = 72.8 bits (177), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Query: 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN 296
K + GH+ + + +++ SDD+ +KIW + + CL + +GH + +
Sbjct: 60 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 119
Query: 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356
+ L+ S S D +R+W + G + L H+ V+A+ F+ S I +SSS DG CRI
Sbjct: 120 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI---VSSSYDGLCRI 176
Query: 357 WDARYSQ 363
WD Q
Sbjct: 177 WDTASGQ 183
Score = 66.6 bits (161), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
+K L+GH + V+C F+ +++GS D V+IW ++T CL + H ++ + +
Sbjct: 101 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 160
Query: 296 NNTLVASASNDFVIRVWRLPDGLPI-SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354
+ +L+ S+S D + R+W G + +++ V+ + FSP I L+++ D T
Sbjct: 161 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI---LAATLDNTL 217
Query: 355 RIWD 358
++WD
Sbjct: 218 KLWD 221
Score = 50.8 bits (120), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRS---GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI 288
K + +K GH++ YC + S G+++++GS+D LV IW+++T + +GH +
Sbjct: 224 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 283
Query: 289 TDLAVSSNNTLVASAS--NDFVIRVWR 313
A ++ASA+ ND I++W+
Sbjct: 284 ISTACHPTENIIASAALENDKTIKLWK 310
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 251 FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGD----ITDLAVSSNNTLVASASND 306
F +G++++ + D +K+W CL + GH+ + + +V+ +V S S D
Sbjct: 201 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV-SGSED 259
Query: 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
++ +W L + L+GHT V + A P + I + +D T ++W +
Sbjct: 260 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS-AALENDKTIKLWKS 311
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG 607
++ + WS D+ +++A D + +W+ G + +L GHS + + +P + +S
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 127
Query: 608 YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666
+D +WD+ G ++ + F+ DG+ IV S G + +T G+ K
Sbjct: 128 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 186
Score = 36.6 bits (83), Expect = 0.11, Method: Composition-based stats.
Identities = 62/280 (22%), Positives = 97/280 (34%), Gaps = 67/280 (23%)
Query: 323 LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXX 382
L GHT AV+++ FSP L SSS D +IW A Y K I+G
Sbjct: 20 LAGHTKAVSSVKFSPNGE---WLASSSADKLIKIWGA---------YDGKFEKTISGHKL 67
Query: 383 XXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442
I A++++ + V+ S D ++W L
Sbjct: 68 G----------------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---------LK 102
Query: 443 VLSGHENDVNYVQFSGCAVASRSAMSDAFKEE------NVPKFKNSWFCHDNIVTC---S 493
L GH N V F+ S +S +F E K + H + V+ +
Sbjct: 103 TLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 159
Query: 494 RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVXXXXXXXXXXXXXXXXXXXXXXXXVNMIVW 553
RDGS I+ S G W A V+ + +
Sbjct: 160 RDGSLIV----SSSYDGLCRIWDTA--------------SGQCLKTLIDDDNPPVSFVKF 201
Query: 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVL 593
S + +++LAA +D + +W+ G + + TGH Y +
Sbjct: 202 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 241
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 32/203 (15%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
L GH AV F +G ++ + S D+L+KIW + GH+ I+D+A SS++
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
L+ SAS+D +++W + G + L+GH+ V F+P+ + I +S S D + RIWD
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWD 159
Query: 359 ARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSD 418
+ + LP D ++ +N +G++ V+ S D
Sbjct: 160 VKTGKCLKT--LPAHSDPVSA-----------------------VHFNRDGSLIVSSSYD 194
Query: 419 TFARVWSA----CKSSVEDSEQP 437
R+W C ++ D + P
Sbjct: 195 GLCRIWDTASGQCLKTLIDDDNP 217
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRS---GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI 288
K + +K GH++ YC + S G+++++GS+D LV IW+++T + +GH +
Sbjct: 247 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 306
Query: 289 TDLAVSSNNTLVASAS--NDFVIRVWR 313
A ++ASA+ ND I++W+
Sbjct: 307 ISTACHPTENIIASAALENDKTIKLWK 333
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 251 FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGD----ITDLAVSSNNTLVASASND 306
F +G++++ + D +K+W CL + GH+ + + +V+ +V S S D
Sbjct: 224 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV-SGSED 282
Query: 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW 357
++ +W L + L+GHT V + A P + I + +D T ++W
Sbjct: 283 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS-AALENDKTIKLW 332
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPR--IAMS 605
++ + WS D+ +++A D + +W+ G + +L GH S+YV + FNP+ + +S
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH--SNYVFCCN-FNPQSNLIVS 148
Query: 606 AGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665
+D +WD+ G ++ + F+ DG+ IV S G + +T G+
Sbjct: 149 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 208
Query: 666 K 666
K
Sbjct: 209 K 209
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 106/307 (34%), Gaps = 69/307 (22%)
Query: 322 VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKX 381
L GHT AV+++ FSP L SSS D +IW A Y K I+G
Sbjct: 42 TLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIWGA---------YDGKFEKTISG-- 87
Query: 382 XXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHEL 441
I A++++ + V+ S D ++W L
Sbjct: 88 --------------HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---------L 124
Query: 442 DVLSGHENDVNYVQFSGCAVASRSAMSDAFKEE------NVPKFKNSWFCHDNIVTC--- 492
L GH N V F+ S +S +F E K + H + V+
Sbjct: 125 KTLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 181
Query: 493 SRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVXXXXXXXXXXXXXXXXXXXXXXXXVNMIV 552
+RDGS I+ S G W A V+ +
Sbjct: 182 NRDGSLIV----SSSYDGLCRIWDTA--------------SGQCLKTLIDDDNPPVSFVK 223
Query: 553 WSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVL--DVHPFNPRIAMSAGYDG 610
+S + +++LAA +D + +W+ G + + TGH Y + + + +S D
Sbjct: 224 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 283
Query: 611 RTIVWDI 617
+W++
Sbjct: 284 LVYIWNL 290
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 32/203 (15%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
L GH AV F +G ++ + S D+L+KIW + GH+ I+D+A SS++
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
L+ SAS+D +++W + G + L+GH+ V F+P+ + I +S S D + RIWD
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI---VSGSFDESVRIWD 157
Query: 359 ARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSD 418
+ + LP D ++ +N +G++ V+ S D
Sbjct: 158 VKTGKCLKT--LPAHSDPVSA-----------------------VHFNRDGSLIVSSSYD 192
Query: 419 TFARVWSA----CKSSVEDSEQP 437
R+W C ++ D + P
Sbjct: 193 GLCRIWDTASGQCLKTLIDDDNP 215
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRS---GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI 288
K + +K GH++ YC + S G+++++GS+D LV IW+++T + +GH +
Sbjct: 245 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 304
Query: 289 TDLAVSSNNTLVASAS--NDFVIRVWR 313
A ++ASA+ ND I++W+
Sbjct: 305 ISTACHPTENIIASAALENDKTIKLWK 331
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 251 FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGD----ITDLAVSSNNTLVASASND 306
F +G++++ + D +K+W CL + GH+ + + +V+ +V S S D
Sbjct: 222 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV-SGSED 280
Query: 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW 357
++ +W L + L+GHT V + A P + I + +D T ++W
Sbjct: 281 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS-AALENDKTIKLW 330
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPR--IAMS 605
++ + WS D+ +++A D + +W+ G + +L GH S+YV + FNP+ + +S
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH--SNYVFCCN-FNPQSNLIVS 146
Query: 606 AGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665
+D +WD+ G ++ + F+ DG+ IV S G + +T G+
Sbjct: 147 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 206
Query: 666 K 666
K
Sbjct: 207 K 207
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 106/307 (34%), Gaps = 69/307 (22%)
Query: 322 VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKX 381
L GHT AV+++ FSP L SSS D +IW A Y K I+G
Sbjct: 40 TLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIWGA---------YDGKFEKTISG-- 85
Query: 382 XXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHEL 441
I A++++ + V+ S D ++W L
Sbjct: 86 --------------HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---------L 122
Query: 442 DVLSGHENDVNYVQFSGCAVASRSAMSDAFKEE------NVPKFKNSWFCHDNIVTC--- 492
L GH N V F+ S +S +F E K + H + V+
Sbjct: 123 KTLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 179
Query: 493 SRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVXXXXXXXXXXXXXXXXXXXXXXXXVNMIV 552
+RDGS I+ S G W A V+ +
Sbjct: 180 NRDGSLIV----SSSYDGLCRIWDTA--------------SGQCLKTLIDDDNPPVSFVK 221
Query: 553 WSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVL--DVHPFNPRIAMSAGYDG 610
+S + +++LAA +D + +W+ G + + TGH Y + + + +S D
Sbjct: 222 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 281
Query: 611 RTIVWDI 617
+W++
Sbjct: 282 LVYIWNL 288
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 98/237 (41%), Gaps = 50/237 (21%)
Query: 232 KMQNIKKLRGHRDAVY-CAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITD 290
++++ K L+GH D V C F G +++GSDD +K+WS T CL + GH G +
Sbjct: 107 ELKSPKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS 164
Query: 291 LAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD 350
+ N ++ S S D ++VW G I L GHT V + + +++S S
Sbjct: 165 SQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK-----RVVSGSR 217
Query: 351 DGTCRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSH--QILCCAYNAN 408
D T R+WD Q L H + C Y +
Sbjct: 218 DATLRVWDIETGQ---------------------------CLHVLMGHVAAVRCVQY--D 248
Query: 409 GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS 465
G V+G+ D +VW ++E +H L GH N V +QF G V S S
Sbjct: 249 GRRVVSGAYDFMVKVWDP------ETETCLH---TLQGHTNRVYSLQFDGIHVVSGS 296
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 72/132 (54%), Gaps = 12/132 (9%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
+ L+GH + VY FD G V++GS D +++W +ET C+ + GH+ + + +
Sbjct: 272 LHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD 329
Query: 296 NNTLVASASNDFVIRVWRLPDGLPISVLRG---HTGAVTAIAFSPRPSAIYQLLSSSDDG 352
N ++ S + D +++W + G + L+G H AVT + F+ +++SSDDG
Sbjct: 330 N--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF-----VITSSDDG 382
Query: 353 TCRIWDARYSQY 364
T ++WD + ++
Sbjct: 383 TVKLWDLKTGEF 394
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 70/150 (46%), Gaps = 10/150 (6%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDIT 289
++ Q + L GH AV C +D GR V++G+ D +VK+W ET CL + +GH +
Sbjct: 226 IETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY 283
Query: 290 DLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS 349
L + V S S D IRVW + G I L GH + + L+S +
Sbjct: 284 SLQFDGIH--VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI-----LVSGN 336
Query: 350 DDGTCRIWDARYSQYSPRIYLP-KPPDAIT 378
D T +IWD + Q + P K A+T
Sbjct: 337 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVT 366
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 73/347 (21%), Positives = 117/347 (33%), Gaps = 106/347 (30%)
Query: 282 RGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSA 341
+GH+ + N +V S S+D ++VW G + L GHTG V + R +
Sbjct: 115 KGHDDHVITCLQFCGNRIV-SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM--RDNI 171
Query: 342 IYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQIL 401
I +S S D T ++W+A + +Y H
Sbjct: 172 I---ISGSTDRTLKVWNAETGECIHTLY---------------------------GHTST 201
Query: 402 CCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAV 461
+ + V+GS D RVW ++ Q +H VL GH V VQ+ G
Sbjct: 202 VRCMHLHEKRVVSGSRDATLRVWDI------ETGQCLH---VLMGHVAAVRCVQYDG--- 249
Query: 462 ASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS-HGKVGRWTRAYH 520
R +S A+ D +W P + H G R Y
Sbjct: 250 --RRVVSGAY-----------------------DFMVKVWDPETETCLHTLQGHTNRVYS 284
Query: 521 LKVXXXXXXXXXXXXXXXXXXXXXXXXVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLV 580
L+ D V++ +D I VW+ G+ +
Sbjct: 285 LQ--------------------------------FDGIHVVSGSLDTSIRVWDVETGNCI 312
Query: 581 HSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE 627
H+LTGH + + ++ I +S D +WDI G ++ +
Sbjct: 313 HTLTGHQSLTSGME---LKDNILVSGNADSTVKIWDIKTGQCLQTLQ 356
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 231 QKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA 275
Q +Q ++ H+ AV C F+++ FVIT SDD VK+W ++T
Sbjct: 350 QCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTG 392
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 556 DNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVW 615
D R V++ D + VW+ + +H+L GH+ Y L F+ +S D VW
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ---FDGIHVVSGSLDTSIRVW 304
Query: 616 DIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLS---DDVGQIYLLNTGQ 661
D+ G I G L G D +I++S D +I+ + TGQ
Sbjct: 305 DVETGNCIHTLT-GHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQ 350
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 95/233 (40%), Gaps = 40/233 (17%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGH--EGDITDL 291
+ + ++ H D V C F ++ T S D+ VKIW T + + H + +
Sbjct: 648 EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHF 707
Query: 292 AVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD 351
SN+ L+A+ SNDF +++W L + + GHT +V FSP L S S D
Sbjct: 708 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL---LASCSAD 764
Query: 352 GTCRIWDARYSQYSPRIYLPK-------PPDAITGKXXXXXXXXXXXXXXLQSHQILCCA 404
GT R+WD R + I + + PP+ + + CC+
Sbjct: 765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI-------------------VKCCS 805
Query: 405 YNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS 457
++A+G + + + K + D ++ +GH + + Y FS
Sbjct: 806 WSADGDKIIVAAKN---------KVLLFDIHTSGLLAEIHTGHHSTIQYCDFS 849
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 96/243 (39%), Gaps = 54/243 (22%)
Query: 228 TMVQKMQNIKKLR------GHRD-----AVYCAIFDRSGRFVITGSDDRLVKIWSMETAF 276
TMV + NI+ L+ G D V C +V G +D +KI +
Sbjct: 935 TMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR 994
Query: 277 CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFS 336
+S GH+ + + +++ + S+S D VI+VW G + L+ H V
Sbjct: 995 VFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDF--- 1050
Query: 337 PRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQ 396
R +LLS S DGT ++W + ITG+
Sbjct: 1051 -RLLQDSRLLSWSFDGTVKVW-----------------NVITGR----------IERDFT 1082
Query: 397 SHQ--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYV 454
HQ +L CA +++ T F + S+D A++WS D P+HE L GH V
Sbjct: 1083 CHQGTVLSCAISSDATKFSSTSADKTAKIWSF------DLLSPLHE---LKGHNGCVRCS 1133
Query: 455 QFS 457
FS
Sbjct: 1134 AFS 1136
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Query: 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR-GHEGDITDLAVSSNNTLVASAS 304
V C + G +I + ++ V ++ + T+ LA GH I S + L A
Sbjct: 801 VKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 859
Query: 305 NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQY 364
+ + + +W + L ++ RGH V + FSP S+ L++SDD T R+W+ +
Sbjct: 860 SQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS---FLTASDDQTIRVWETKKVCK 916
Query: 365 SPRIYLPKPPDAI 377
+ I L + D +
Sbjct: 917 NSAIVLKQEIDVV 929
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 258 VITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG 317
+++ S D VK+W++ T H+G + A+SS+ T +S S D ++W
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1117
Query: 318 LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD-GTCRIWDARYSQ 363
P+ L+GH G V AFS LL++ DD G RIW+ Q
Sbjct: 1118 SPLHELKGHNGCVRCSAFSLDGI----LLATGDDNGEIRIWNVSDGQ 1160
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASC---------RGHEG 286
+ +L+GH V C+ F G + TG D+ ++IW++ L SC H G
Sbjct: 1120 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGG 1179
Query: 287 DITDLAVSSNNTLVASASNDFVIRVWRLPDG 317
+TD+ S ++ + SA ++ W + G
Sbjct: 1180 WVTDVCFSPDSKTLVSAGG--YLKWWNVATG 1208
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 55/272 (20%), Positives = 104/272 (38%), Gaps = 48/272 (17%)
Query: 399 QILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSG 458
++LCCA++++ + T S+D ++W + + +H D H VN F+
Sbjct: 659 EVLCCAFSSDDSYIATCSADKKVKIWDSATGKL------VHTYD---EHSEQVNCCHFTN 709
Query: 459 CA--VASRSAMSDAFK---EENVPKFKNSWFCHDN-------------IVTCSRDGSAII 500
+ + + +D F + N + +N+ F H N + +CS DG+ +
Sbjct: 710 KSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769
Query: 501 WIPRSRRSHGKVGRWTRAYHLKVXXXXXXXXXXXXXXXXXXXXXXXXVNMIVWSLDNRFV 560
W RS + + + L V WS D +
Sbjct: 770 WDVRSANERKSIN--VKRFFLS--------------SEDPPEDVEVIVKCCSWSADGDKI 813
Query: 561 LAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG 620
+ A + + G L TGH ++ D P++ +A+ A +W+I
Sbjct: 814 IVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNI--D 870
Query: 621 TPIRIYEI-GRFKLVDG-KFSPDGTSIVLSDD 650
+ +++ + G V G FSPDG+S + + D
Sbjct: 871 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASD 902
Score = 37.4 bits (85), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 33/72 (45%)
Query: 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLV 300
GH + F + V++W++++ +A CRGH + + S + +
Sbjct: 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSF 897
Query: 301 ASASNDFVIRVW 312
+AS+D IRVW
Sbjct: 898 LTASDDQTIRVW 909
Score = 34.3 bits (77), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Query: 553 WSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSA-------SSYVLDVHPFNP--RIA 603
+SLD + + I +WN DG L+HS S +V DV F+P +
Sbjct: 1135 FSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV-CFSPDSKTL 1193
Query: 604 MSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659
+SAG G W++ G + + L SPD + V D++G +Y+L
Sbjct: 1194 VSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247
Score = 30.4 bits (67), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 3/130 (2%)
Query: 553 WSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRT 612
+S D+ ++ D ++ +W++ G LVH+ HS + + ++ G +
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724
Query: 613 I-VWDIWEGTPIRIYEIGRFKLVD-GKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKY 670
+ +WD+ R G V+ +FSPD + G + L + +K
Sbjct: 725 LKLWDL-NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV 783
Query: 671 DQFFLGDYRP 680
+FFL P
Sbjct: 784 KRFFLSSEDP 793
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 95/233 (40%), Gaps = 40/233 (17%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGH--EGDITDL 291
+ + ++ H D V C F ++ T S D+ VKIW T + + H + +
Sbjct: 655 EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHF 714
Query: 292 AVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD 351
SN+ L+A+ SNDF +++W L + + GHT +V FSP L S S D
Sbjct: 715 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL---LASCSAD 771
Query: 352 GTCRIWDARYSQYSPRIYLPK-------PPDAITGKXXXXXXXXXXXXXXLQSHQILCCA 404
GT R+WD R + I + + PP+ + + CC+
Sbjct: 772 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI-------------------VKCCS 812
Query: 405 YNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS 457
++A+G + + + K + D ++ +GH + + Y FS
Sbjct: 813 WSADGDKIIVAAKN---------KVLLFDIHTSGLLAEIHTGHHSTIQYCDFS 856
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 96/243 (39%), Gaps = 54/243 (22%)
Query: 228 TMVQKMQNIKKLR------GHRD-----AVYCAIFDRSGRFVITGSDDRLVKIWSMETAF 276
TMV + NI+ L+ G D V C +V G +D +KI +
Sbjct: 942 TMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR 1001
Query: 277 CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFS 336
+S GH+ + + +++ + S+S D VI+VW G + L+ H V
Sbjct: 1002 VFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDF--- 1057
Query: 337 PRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQ 396
R +LLS S DGT ++W + ITG+
Sbjct: 1058 -RLLQDSRLLSWSFDGTVKVW-----------------NVITGR----------IERDFT 1089
Query: 397 SHQ--ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYV 454
HQ +L CA +++ T F + S+D A++WS D P+HE L GH V
Sbjct: 1090 CHQGTVLSCAISSDATKFSSTSADKTAKIWSF------DLLSPLHE---LKGHNGCVRCS 1140
Query: 455 QFS 457
FS
Sbjct: 1141 AFS 1143
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Query: 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR-GHEGDITDLAVSSNNTLVASAS 304
V C + G +I + ++ V ++ + T+ LA GH I S + L A
Sbjct: 808 VKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 866
Query: 305 NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQY 364
+ + + +W + L ++ RGH V + FSP S+ L++SDD T R+W+ +
Sbjct: 867 SQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS---FLTASDDQTIRVWETKKVCK 923
Query: 365 SPRIYLPKPPDAI 377
+ I L + D +
Sbjct: 924 NSAIVLKQEIDVV 936
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 258 VITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG 317
+++ S D VK+W++ T H+G + A+SS+ T +S S D ++W
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1124
Query: 318 LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD-GTCRIWDARYSQ 363
P+ L+GH G V AFS LL++ DD G RIW+ Q
Sbjct: 1125 SPLHELKGHNGCVRCSAFSLDGI----LLATGDDNGEIRIWNVSDGQ 1167
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASC---------RGHEG 286
+ +L+GH V C+ F G + TG D+ ++IW++ L SC H G
Sbjct: 1127 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGG 1186
Query: 287 DITDLAVSSNNTLVASASNDFVIRVWRLPDG 317
+TD+ S ++ + SA ++ W + G
Sbjct: 1187 WVTDVCFSPDSKTLVSAGG--YLKWWNVATG 1215
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 55/272 (20%), Positives = 104/272 (38%), Gaps = 48/272 (17%)
Query: 399 QILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSG 458
++LCCA++++ + T S+D ++W + + +H D H VN F+
Sbjct: 666 EVLCCAFSSDDSYIATCSADKKVKIWDSATGKL------VHTYD---EHSEQVNCCHFTN 716
Query: 459 CA--VASRSAMSDAFK---EENVPKFKNSWFCHDN-------------IVTCSRDGSAII 500
+ + + +D F + N + +N+ F H N + +CS DG+ +
Sbjct: 717 KSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 776
Query: 501 WIPRSRRSHGKVGRWTRAYHLKVXXXXXXXXXXXXXXXXXXXXXXXXVNMIVWSLDNRFV 560
W RS + + + L V WS D +
Sbjct: 777 WDVRSANERKSIN--VKRFFLS--------------SEDPPEDVEVIVKCCSWSADGDKI 820
Query: 561 LAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG 620
+ A + + G L TGH ++ D P++ +A+ A +W+I
Sbjct: 821 IVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNI--D 877
Query: 621 TPIRIYEI-GRFKLVDG-KFSPDGTSIVLSDD 650
+ +++ + G V G FSPDG+S + + D
Sbjct: 878 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASD 909
Score = 37.4 bits (85), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 33/72 (45%)
Query: 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLV 300
GH + F + V++W++++ +A CRGH + + S + +
Sbjct: 845 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSF 904
Query: 301 ASASNDFVIRVW 312
+AS+D IRVW
Sbjct: 905 LTASDDQTIRVW 916
Score = 34.3 bits (77), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Query: 553 WSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSA-------SSYVLDVHPFNP--RIA 603
+SLD + + I +WN DG L+HS S +V DV F+P +
Sbjct: 1142 FSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV-CFSPDSKTL 1200
Query: 604 MSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659
+SAG G W++ G + + L SPD + V D++G +Y+L
Sbjct: 1201 VSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1254
Score = 30.4 bits (67), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 3/130 (2%)
Query: 553 WSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRT 612
+S D+ ++ D ++ +W++ G LVH+ HS + + ++ G +
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 731
Query: 613 I-VWDIWEGTPIRIYEIGRFKLVD-GKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKY 670
+ +WD+ R G V+ +FSPD + G + L + +K
Sbjct: 732 LKLWDL-NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV 790
Query: 671 DQFFLGDYRP 680
+FFL P
Sbjct: 791 KRFFLSSEDP 800
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN 296
+ L+GH D+V FD SG+ + + S D +K+W + C+ + GH+ +++ +++ N
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN 203
Query: 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS-SDDGTCR 355
+ SAS D I++W + G + GH V + RP+ L++S S+D T R
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV----RPNQDGTLIASCSNDQTVR 259
Query: 356 IW 357
+W
Sbjct: 260 VW 261
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 17/146 (11%)
Query: 231 QKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITD 290
Q + I+ + GH V +G +++ S D+ +K+W ++T +C+ + GH +
Sbjct: 180 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM 239
Query: 291 LAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRP--SAIYQ---- 344
+ + + TL+AS SND +RVW + + LR H V I+++P S+I +
Sbjct: 240 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS 299
Query: 345 -----------LLSSSDDGTCRIWDA 359
LLS S D T ++WD
Sbjct: 300 ETKKSGKPGPFLLSGSRDKTIKMWDV 325
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
L GHR V IF +++ S+D +K+W ET + +GH + D++ +
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
L+AS S D I++W I + GH V++++ P I +S+S D T ++W+
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI---VSASRDKTIKMWE 220
Query: 359 AR 360
+
Sbjct: 221 VQ 222
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 253 RSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312
+ G F+++GS D+ +K+W + T CL + GH+ + + S + S ++D +RVW
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Query: 313 RLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360
+ + L H VT++ F +A Y +++ S D T ++W+ R
Sbjct: 366 DYKNKRCMKTLNAHEHFVTSLDF--HKTAPY-VVTGSVDQTVKVWECR 410
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 23/151 (15%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDIT 289
VQ +K GHR+ V ++ G + + S+D+ V++W + T C A R H +
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 280
Query: 290 DLAVSSNNT--------------------LVASASNDFVIRVWRLPDGLPISVLRGHTGA 329
++ + ++ + S S D I++W + G+ + L GH
Sbjct: 281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340
Query: 330 VTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360
V + F S +LS +DD T R+WD +
Sbjct: 341 VRGVLFH---SGGKFILSCADDKTLRVWDYK 368
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
L GH + V +F G+F+++ +DD+ +++W + C+ + HE +T L
Sbjct: 334 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 393
Query: 299 LVASASNDFVIRVW 312
V + S D ++VW
Sbjct: 394 YVVTGSVDQTVKVW 407
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIW 270
+K L H V F ++ +V+TGS D+ VK+W
Sbjct: 373 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 17/141 (12%)
Query: 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA------------FCLASCRGHEGDI 288
GH+D+VY +F R G+ V++GS DR VK+W+++ A C + GH+ +
Sbjct: 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV 313
Query: 289 TDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSA--IYQLL 346
+A + N+ + S S D + W G P+ +L+GH +V ++A + S Y +
Sbjct: 314 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 373
Query: 347 SS-SDDGTCRIWDARYSQYSP 366
++ S D RIW +Y + +P
Sbjct: 374 ATGSGDCKARIW--KYKKIAP 392
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 251 FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIR 310
F G+F+ TG++DRL++IW +E + +GHE DI L + + S S D +R
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 190
Query: 311 VWRLPDG---LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
+W L G L +S+ G VT +A SP + + S D R+WD+
Sbjct: 191 IWDLRTGQCSLTLSIEDG----VTTVAVSPGDGKY--IAAGSLDRAVRVWDS 236
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 12/137 (8%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDIT 289
++ + + L+GH +Y + SG +++GS DR V+IW + T C + +G +T
Sbjct: 152 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VT 210
Query: 290 DLAVS-SNNTLVASASNDFVIRVWRLPDGLPISVL-------RGHTGAVTAIAFSPRPSA 341
+AVS + +A+ S D +RVW G + L GH +V ++ F+ +
Sbjct: 211 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS 270
Query: 342 IYQLLSSSDDGTCRIWD 358
+ +S S D + ++W+
Sbjct: 271 V---VSGSLDRSVKLWN 284
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 20/162 (12%)
Query: 221 YAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITG----------SDDRLVKIW 270
Y + P+ + + K H V C F G ++ TG SD LV
Sbjct: 42 YILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARL 101
Query: 271 SMETA-------FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL 323
S ++A +S + I + S + +A+ + D +IR+W + + + +L
Sbjct: 102 SDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL 161
Query: 324 RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS 365
+GH + ++ + P +L+S S D T RIWD R Q S
Sbjct: 162 QGHEQDIYSLDYFPSGD---KLVSGSGDRTVRIWDLRTGQCS 200
Score = 34.7 bits (78), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG 607
+ + +S D +F+ D I +W+ + +V L GH Y LD P ++ +G
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 608 YDGRTI-VWDIWEG 620
RT+ +WD+ G
Sbjct: 186 --DRTVRIWDLRTG 197
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 5/128 (3%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGH--EGDITDL 291
+ + +++ H D V C F RF+ T S D+ VKIW+ T + + H + +
Sbjct: 654 EKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHF 713
Query: 292 AVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD 351
SS++ L+A+ S+D +++W L + + GHT +V FSP L S S D
Sbjct: 714 TNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKL---LASCSAD 770
Query: 352 GTCRIWDA 359
GT ++WDA
Sbjct: 771 GTLKLWDA 778
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
LRGH++ V ++ R +++ S D VK+W++ T H+G + +S + T
Sbjct: 1046 LRGHQETVKDFRLLKNSR-LLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDAT 1104
Query: 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD-GTCRIW 357
+S S D ++W LP+ LRGH G V AFS + LL++ DD G RIW
Sbjct: 1105 KFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDST----LLATGDDNGEIRIW 1160
Query: 358 DA 359
+
Sbjct: 1161 NV 1162
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Query: 231 QKMQNIKKL--RGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI 288
+ + N+ +L R H DAVY A F G+ + + D+ ++++ ET L + HE ++
Sbjct: 607 KNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEV 666
Query: 289 TDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS 348
A S+++ +A+ S D +++W G + H+ V F+ + L +
Sbjct: 667 LCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLL-LATG 725
Query: 349 SDDGTCRIWD 358
S D ++WD
Sbjct: 726 SSDCFLKLWD 735
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 81/201 (40%), Gaps = 34/201 (16%)
Query: 242 HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVA 301
H+ V+ F + +I+ SDD +++W+ + C+ RGH+ + D + N+ L+
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF-LRGHQETVKDFRLLKNSRLL- 1065
Query: 302 SASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY 361
S S D ++VW + G H G V + S + + S+S D T +IW
Sbjct: 1066 SWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDAT---KFSSTSADKTAKIW---- 1118
Query: 362 SQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQ--ILCCAYNANGTVFVTGSSDT 419
S + LP L+ H + C A++ + T+ TG +
Sbjct: 1119 ---SFDLLLP--------------------LHELRGHNGCVRCSAFSVDSTLLATGDDNG 1155
Query: 420 FARVWSACKSSVEDSEQPIHE 440
R+W+ + P+ E
Sbjct: 1156 EIRIWNVSNGELLHLCAPLSE 1176
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 15/142 (10%)
Query: 237 KKLRGHRDAVY-CAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
K H+ V C I + +F T S D+ KIWS + L RGH G + A S
Sbjct: 1085 KDFVCHQGTVLSCDISHDATKFSST-SADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSV 1143
Query: 296 NNTLVASASNDFVIRVWRLPDGLPISVL--------RGHTGAVTAIAFSPRPSAIYQLLS 347
++TL+A+ ++ IR+W + +G + + H G VT + FSP +
Sbjct: 1144 DSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLI---- 1199
Query: 348 SSDDGTCRIWDARYSQYSPRIY 369
S G + W+ + S Y
Sbjct: 1200 -SAGGYIKWWNVVTGESSQTFY 1220
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 5/133 (3%)
Query: 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR-GHEGDITDLAVSSNNTLVASAS 304
V C + G ++ + +++ ++ + T+ L GH I S N L A
Sbjct: 807 VKCCSWSADGARIMVAAKNKIF-LFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVAL 865
Query: 305 NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQY 364
+ + + +W ++ RGH V + FSP S+ L+SSDD T R+W+ +
Sbjct: 866 SQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSS---FLTSSDDQTIRLWETKKVCK 922
Query: 365 SPRIYLPKPPDAI 377
+ + L + D +
Sbjct: 923 NSAVMLKQEVDVV 935
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASC--------RGHEGD 287
+ +LRGH V C+ F + TG D+ ++IW++ L C H G
Sbjct: 1126 LHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGW 1185
Query: 288 ITDLAVSSNNTLVASASNDFVIRVWRLPDG 317
+TDL S + ++ SA I+ W + G
Sbjct: 1186 VTDLCFSPDGKMLISAGG--YIKWWNVVTG 1213
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 3/130 (2%)
Query: 553 WSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG-YDGR 611
+S D+RF+ +D ++ +WN++ G LVH+ HS + + ++ G D
Sbjct: 671 FSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCF 730
Query: 612 TIVWDIWEGTPIRIYEIGRFKLVD-GKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKY 670
+WD+ R G V+ +FSPD + G + L + +K
Sbjct: 731 LKLWDL-NQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINV 789
Query: 671 DQFFLGDYRP 680
QFFL P
Sbjct: 790 KQFFLNLEDP 799
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 88/235 (37%), Gaps = 48/235 (20%)
Query: 230 VQKMQNIKKLRGHRD-----AVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGH 284
++++Q I G D V C +++ G ++ ++I + S H
Sbjct: 949 IRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQH 1008
Query: 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQ 344
+ + + +++ + S+S+D I+VW I LRGH V +
Sbjct: 1009 KKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI-FLRGHQETVKDFRLLKNS----R 1063
Query: 345 LLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQ--ILC 402
LLS S DGT ++W + ITG HQ +L
Sbjct: 1064 LLSWSFDGTVKVW-----------------NIITGN----------KEKDFVCHQGTVLS 1096
Query: 403 CAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS 457
C + + T F + S+D A++WS D P+HE L GH V FS
Sbjct: 1097 CDISHDATKFSSTSADKTAKIWSF------DLLLPLHE---LRGHNGCVRCSAFS 1142
Score = 37.4 bits (85), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 59/281 (20%), Positives = 105/281 (37%), Gaps = 48/281 (17%)
Query: 399 QILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSG 458
++LCCA++ + T S D ++W++ + +H D H VN F+
Sbjct: 665 EVLCCAFSTDDRFIATCSVDKKVKIWNSMTGEL------VHTYD---EHSEQVNCCHFTN 715
Query: 459 CA--VASRSAMSDAFK---EENVPKFKNSWFCHDN-------------IVTCSRDGSAII 500
+ + + SD F + N + +N+ F H N + +CS DG+ +
Sbjct: 716 SSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKL 775
Query: 501 WIPRSRRSHGKVGRWTRAYHLKVXXXXXXXXXXXXXXXXXXXXXXXXVNMIVWSLDNRFV 560
W S + + + L + V WS D +
Sbjct: 776 WDATSANERKSIN--VKQFFLNL--------------EDPQEDMEVIVKCCSWSADGARI 819
Query: 561 LAAIMDCRICVWNAVDGSLVHSL-TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE 619
+ A + +I +++ L+ + TGH ++ D P N +A+ A +W+
Sbjct: 820 MVAAKN-KIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQN-HLAVVALSQYCVELWNTDS 877
Query: 620 GTPIRIYEIGRFKLVDG-KFSPDGTSIVLSDDVGQIYLLNT 659
+ + G V G FSPDG+S + S D I L T
Sbjct: 878 RSKVADCR-GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWET 917
Score = 33.5 bits (75), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 32/72 (44%)
Query: 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLV 300
GH + F + V++W+ ++ +A CRGH + + S + +
Sbjct: 844 GHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSF 903
Query: 301 ASASNDFVIRVW 312
++S+D IR+W
Sbjct: 904 LTSSDDQTIRLW 915
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 553 WSLDNRFVLAAIMDCRICVWNAVDGSLVH---SLTGHSASS---YVLDVHPFNP--RIAM 604
+S+D+ + + I +WN +G L+H L+ A++ +V D+ F+P ++ +
Sbjct: 1141 FSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDL-CFSPDGKMLI 1199
Query: 605 SAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659
SAG G W++ G + + L SPD + V D++G +Y+L T
Sbjct: 1200 SAG--GYIKWWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVTVDNLGILYILQT 1252
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 115/288 (39%), Gaps = 47/288 (16%)
Query: 187 WPHMQADQVHGLSLREIGGGFKKHHRAPS----VCSACYAIAKPSTMVQKMQNIK---KL 239
W ++VH + LR APS C I + + N++ +L
Sbjct: 93 WDSYTTNKVHAIPLRS--SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSREL 150
Query: 240 RGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTL 299
GH + C F + ++T S D +W +ET + GH GD+ L+++ + L
Sbjct: 151 AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 209
Query: 300 VASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
S + D ++W + +G+ GH + AI F P +A + SDD TCR++D
Sbjct: 210 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA---FATGSDDATCRLFDL 266
Query: 360 RYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDT 419
R Q + + I G I +++ +G + + G D
Sbjct: 267 RADQ---ELMTYSHDNIICG--------------------ITSVSFSKSGRLLLAGYDDF 303
Query: 420 FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GCAVASRS 465
VW A K+ VL+GH+N V+ + + G AVA+ S
Sbjct: 304 NCNVWDALKAD---------RAGVLAGHDNRVSCLGVTDDGMAVATGS 342
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/267 (19%), Positives = 99/267 (37%), Gaps = 48/267 (17%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDL 291
+M+ + LRGH +Y + R +++ S D + IW T + + +
Sbjct: 55 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 114
Query: 292 AVSSNNTLVASASNDFVIRVWRLPD---GLPIS-VLRGHTGAVTAIAFSPRPSAIYQLLS 347
A + + VA D + ++ L + +S L GHTG ++ F Q+++
Sbjct: 115 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN----QIVT 170
Query: 348 SSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNA 407
SS D TC +WD Q + + ++ +
Sbjct: 171 SSGDTTCALWDIETGQQTTT-------------------------FTGHTGDVMSLSLAP 205
Query: 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF----SGCAVAS 463
+ +FV+G+ D A++W + + +GHE+D+N + F + A S
Sbjct: 206 DTRLFVSGACDASAKLWDVREGMCRQT---------FTGHESDINAICFFPNGNAFATGS 256
Query: 464 RSAMSDAFKEENVPKFKNSWFCHDNIV 490
A F + + HDNI+
Sbjct: 257 DDATCRLFDLRADQELMT--YSHDNII 281
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 244 DAVYCAI----FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTL 299
D + C I F +SGR ++ G DD +W A GH+ ++ L V+ +
Sbjct: 278 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA 337
Query: 300 VASASNDFVIRVW 312
VA+ S D +++W
Sbjct: 338 VATGSWDSFLKIW 350
Score = 34.3 bits (77), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 582 SLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPD 641
+L GH A Y + + R+ +SA DG+ I+WD + + + ++ ++P
Sbjct: 61 TLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 119
Query: 642 GTSIVLS--DDVGQIYLLNTGQG 662
G + D++ IY L T +G
Sbjct: 120 GNYVACGGLDNICSIYNLKTREG 142
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 8/146 (5%)
Query: 216 VCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA 275
V AC A AK + + M + GH + F +G TGSDD +++ +
Sbjct: 211 VSGACDASAKLWDVREGMCR-QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 269
Query: 276 FCLASCRGHEG---DITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTA 332
L + H+ IT ++ S + L+ + +DF VW VL GH V+
Sbjct: 270 QELMT-YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC 328
Query: 333 IAFSPRPSAIYQLLSSSDDGTCRIWD 358
+ + A+ + S D +IW+
Sbjct: 329 LGVTDDGMAVA---TGSWDSFLKIWN 351
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 115/288 (39%), Gaps = 47/288 (16%)
Query: 187 WPHMQADQVHGLSLREIGGGFKKHHRAPS----VCSACYAIAKPSTMVQKMQNIK---KL 239
W ++VH + LR APS C I + + N++ +L
Sbjct: 82 WDSYTTNKVHAIPLRS--SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSREL 139
Query: 240 RGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTL 299
GH + C F + ++T S D +W +ET + GH GD+ L+++ + L
Sbjct: 140 AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198
Query: 300 VASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
S + D ++W + +G+ GH + AI F P +A + SDD TCR++D
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA---FATGSDDATCRLFDL 255
Query: 360 RYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDT 419
R Q + + I G I +++ +G + + G D
Sbjct: 256 RADQ---ELMTYSHDNIICG--------------------ITSVSFSKSGRLLLAGYDDF 292
Query: 420 FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GCAVASRS 465
VW A K+ VL+GH+N V+ + + G AVA+ S
Sbjct: 293 NCNVWDALKAD---------RAGVLAGHDNRVSCLGVTDDGMAVATGS 331
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 53/267 (19%), Positives = 99/267 (37%), Gaps = 48/267 (17%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDL 291
+M+ + LRGH +Y + R +++ S D + IW T + + +
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 292 AVSSNNTLVASASNDFVIRVWRLPD---GLPIS-VLRGHTGAVTAIAFSPRPSAIYQLLS 347
A + + VA D + ++ L + +S L GHTG ++ F Q+++
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN----QIVT 159
Query: 348 SSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNA 407
SS D TC +WD Q + + ++ +
Sbjct: 160 SSGDTTCALWDIETGQQTT-------------------------TFTGHTGDVMSLSLAP 194
Query: 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF----SGCAVAS 463
+ +FV+G+ D A++W + + +GHE+D+N + F + A S
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQT---------FTGHESDINAICFFPNGNAFATGS 245
Query: 464 RSAMSDAFKEENVPKFKNSWFCHDNIV 490
A F + + HDNI+
Sbjct: 246 DDATCRLFDLRADQELMT--YSHDNII 270
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 244 DAVYCAI----FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTL 299
D + C I F +SGR ++ G DD +W A GH+ ++ L V+ +
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA 326
Query: 300 VASASNDFVIRVW 312
VA+ S D +++W
Sbjct: 327 VATGSWDSFLKIW 339
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 582 SLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPD 641
+L GH A Y + + R+ +SA DG+ I+WD + + + ++ ++P
Sbjct: 50 TLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 642 GTSIVLS--DDVGQIYLLNTGQG 662
G + D++ IY L T +G
Sbjct: 109 GNYVACGGLDNICSIYNLKTREG 131
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 8/146 (5%)
Query: 216 VCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA 275
V AC A AK + + M + GH + F +G TGSDD +++ +
Sbjct: 200 VSGACDASAKLWDVREGMCR-QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 276 FCLASCRGHEG---DITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTA 332
L + H+ IT ++ S + L+ + +DF VW VL GH V+
Sbjct: 259 QELMT-YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC 317
Query: 333 IAFSPRPSAIYQLLSSSDDGTCRIWD 358
+ + A+ + S D +IW+
Sbjct: 318 LGVTDDGMAV---ATGSWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 115/288 (39%), Gaps = 47/288 (16%)
Query: 187 WPHMQADQVHGLSLREIGGGFKKHHRAPS----VCSACYAIAKPSTMVQKMQNIK---KL 239
W ++VH + LR APS C I + + N++ +L
Sbjct: 82 WDSYTTNKVHAIPLRS--SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSREL 139
Query: 240 RGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTL 299
GH + C F + ++T S D +W +ET + GH GD+ L+++ + L
Sbjct: 140 AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198
Query: 300 VASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
S + D ++W + +G+ GH + AI F P +A + SDD TCR++D
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA---FATGSDDATCRLFDL 255
Query: 360 RYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDT 419
R Q + + I G I +++ +G + + G D
Sbjct: 256 RADQ---ELMTYSHDNIICG--------------------ITSVSFSKSGRLLLAGYDDF 292
Query: 420 FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GCAVASRS 465
VW A K+ VL+GH+N V+ + + G AVA+ S
Sbjct: 293 NCNVWDALKAD---------RAGVLAGHDNRVSCLGVTDDGMAVATGS 331
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/267 (19%), Positives = 99/267 (37%), Gaps = 48/267 (17%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDL 291
+M+ + LRGH +Y + R +++ S D + IW T + + +
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 292 AVSSNNTLVASASNDFVIRVWRLPD---GLPIS-VLRGHTGAVTAIAFSPRPSAIYQLLS 347
A + + VA D + ++ L + +S L GHTG ++ F Q+++
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN----QIVT 159
Query: 348 SSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNA 407
SS D TC +WD Q + + ++ +
Sbjct: 160 SSGDTTCALWDIETGQQTT-------------------------TFTGHTGDVMSLSLAP 194
Query: 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF----SGCAVAS 463
+ +FV+G+ D A++W + + +GHE+D+N + F + A S
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQT---------FTGHESDINAICFFPNGNAFATGS 245
Query: 464 RSAMSDAFKEENVPKFKNSWFCHDNIV 490
A F + + HDNI+
Sbjct: 246 DDATCRLFDLRADQELMT--YSHDNII 270
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 244 DAVYCAI----FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTL 299
D + C I F +SGR ++ G DD +W A GH+ ++ L V+ +
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA 326
Query: 300 VASASNDFVIRVW 312
VA+ S D +++W
Sbjct: 327 VATGSWDSFLKIW 339
Score = 34.3 bits (77), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 582 SLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPD 641
+L GH A Y + + R+ +SA DG+ I+WD + + + ++ ++P
Sbjct: 50 TLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 642 GTSIVLS--DDVGQIYLLNTGQG 662
G + D++ IY L T +G
Sbjct: 109 GNYVACGGLDNICSIYNLKTREG 131
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 8/146 (5%)
Query: 216 VCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA 275
V AC A AK + + M + GH + F +G TGSDD +++ +
Sbjct: 200 VSGACDASAKLWDVREGMCR-QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 276 FCLASCRGHEG---DITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTA 332
L + H+ IT ++ S + L+ + +DF VW VL GH V+
Sbjct: 259 QELMT-YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC 317
Query: 333 IAFSPRPSAIYQLLSSSDDGTCRIWD 358
+ + A+ + S D +IW+
Sbjct: 318 LGVTDDGMAV---ATGSWDSFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 115/288 (39%), Gaps = 47/288 (16%)
Query: 187 WPHMQADQVHGLSLREIGGGFKKHHRAPS----VCSACYAIAKPSTMVQKMQNIK---KL 239
W ++VH + LR APS C I + + N++ +L
Sbjct: 82 WDSYTTNKVHAIPLRS--SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSREL 139
Query: 240 RGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTL 299
GH + C F + ++T S D +W +ET + GH GD+ L+++ + L
Sbjct: 140 AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198
Query: 300 VASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
S + D ++W + +G+ GH + AI F P +A + SDD TCR++D
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA---FATGSDDATCRLFDL 255
Query: 360 RYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDT 419
R Q + + I G I +++ +G + + G D
Sbjct: 256 RADQ---ELMTYSHDNIICG--------------------ITSVSFSKSGRLLLAGYDDF 292
Query: 420 FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GCAVASRS 465
VW A K+ VL+GH+N V+ + + G AVA+ S
Sbjct: 293 NCNVWDALKAD---------RAGVLAGHDNRVSCLGVTDDGMAVATGS 331
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/267 (19%), Positives = 99/267 (37%), Gaps = 48/267 (17%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDL 291
+M+ + LRGH +Y + R +++ S D + IW T + + +
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 292 AVSSNNTLVASASNDFVIRVWRLPD---GLPIS-VLRGHTGAVTAIAFSPRPSAIYQLLS 347
A + + VA D + ++ L + +S L GHTG ++ F Q+++
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN----QIVT 159
Query: 348 SSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNA 407
SS D TC +WD Q + + ++ +
Sbjct: 160 SSGDTTCALWDIETGQQTT-------------------------TFTGHTGDVMSLSLAP 194
Query: 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF----SGCAVAS 463
+ +FV+G+ D A++W + + +GHE+D+N + F + A S
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQT---------FTGHESDINAICFFPNGNAFATGS 245
Query: 464 RSAMSDAFKEENVPKFKNSWFCHDNIV 490
A F + + HDNI+
Sbjct: 246 DDATCRLFDLRADQELMT--YSHDNII 270
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 244 DAVYCAI----FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTL 299
D + C I F +SGR ++ G DD +W A GH+ ++ L V+ +
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA 326
Query: 300 VASASNDFVIRVW 312
VA+ S D +++W
Sbjct: 327 VATGSWDSFLKIW 339
Score = 34.3 bits (77), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 582 SLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPD 641
+L GH A Y + + R+ +SA DG+ I+WD + + + ++ ++P
Sbjct: 50 TLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 642 GTSIVLS--DDVGQIYLLNTGQG 662
G + D++ IY L T +G
Sbjct: 109 GNYVACGGLDNICSIYNLKTREG 131
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 8/146 (5%)
Query: 216 VCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA 275
V AC A AK + + M + GH + F +G TGSDD +++ +
Sbjct: 200 VSGACDASAKLWDVREGMCR-QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 276 FCLASCRGHEG---DITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTA 332
L + H+ IT ++ S + L+ + +DF VW VL GH V+
Sbjct: 259 QELMT-YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC 317
Query: 333 IAFSPRPSAIYQLLSSSDDGTCRIWD 358
+ + A+ + S D +IW+
Sbjct: 318 LGVTDDGMAV---ATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 115/288 (39%), Gaps = 47/288 (16%)
Query: 187 WPHMQADQVHGLSLREIGGGFKKHHRAPS----VCSACYAIAKPSTMVQKMQNIK---KL 239
W ++VH + LR APS C I + + N++ +L
Sbjct: 82 WDSYTTNKVHAIPLRS--SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSREL 139
Query: 240 RGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTL 299
GH + C F + ++T S D +W +ET + GH GD+ L+++ + L
Sbjct: 140 AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198
Query: 300 VASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
S + D ++W + +G+ GH + AI F P +A + SDD TCR++D
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA---FATGSDDATCRLFDL 255
Query: 360 RYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDT 419
R Q + + I G I +++ +G + + G D
Sbjct: 256 RADQ---ELMTYSHDNIICG--------------------ITSVSFSKSGRLLLAGYDDF 292
Query: 420 FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS--GCAVASRS 465
VW A K+ VL+GH+N V+ + + G AVA+ S
Sbjct: 293 NCNVWDALKAD---------RAGVLAGHDNRVSCLGVTDDGMAVATGS 331
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 53/267 (19%), Positives = 99/267 (37%), Gaps = 48/267 (17%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDL 291
+M+ + LRGH +Y + R +++ S D + IW T + + +
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 292 AVSSNNTLVASASNDFVIRVWRLPD---GLPIS-VLRGHTGAVTAIAFSPRPSAIYQLLS 347
A + + VA D + ++ L + +S L GHTG ++ F Q+++
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN----QIVT 159
Query: 348 SSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNA 407
SS D TC +WD Q + + ++ +
Sbjct: 160 SSGDTTCALWDIETGQQTT-------------------------TFTGHTGDVMSLSLAP 194
Query: 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF----SGCAVAS 463
+ +FV+G+ D A++W + + +GHE+D+N + F + A S
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQT---------FTGHESDINAICFFPNGNAFATGS 245
Query: 464 RSAMSDAFKEENVPKFKNSWFCHDNIV 490
A F + + HDNI+
Sbjct: 246 DDATCRLFDLRADQELMT--YSHDNII 270
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 244 DAVYCAI----FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTL 299
D + C I F +SGR ++ G DD +W A GH+ ++ L V+ +
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA 326
Query: 300 VASASNDFVIRVW 312
VA+ S D +++W
Sbjct: 327 VATGSWDSFLKIW 339
Score = 34.7 bits (78), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 582 SLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPD 641
+L GH A Y + + R+ +SA DG+ I+WD + + + ++ ++P
Sbjct: 50 TLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 642 GTSIVLS--DDVGQIYLLNTGQG 662
G + D++ IY L T +G
Sbjct: 109 GNYVACGGLDNICSIYNLKTREG 131
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 8/146 (5%)
Query: 216 VCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA 275
V AC A AK + + M + GH + F +G TGSDD +++ +
Sbjct: 200 VSGACDASAKLWDVREGMCR-QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 276 FCLASCRGHEG---DITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTA 332
L + H+ IT ++ S + L+ + +DF VW VL GH V+
Sbjct: 259 QELMT-YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC 317
Query: 333 IAFSPRPSAIYQLLSSSDDGTCRIWD 358
+ + A+ + S D +IW+
Sbjct: 318 LGVTDDGMAV---ATGSWDSFLKIWN 340
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 17/188 (9%)
Query: 241 GHRDAVYCAIFDRSGR--FVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
GHRD V C F + +++ S D+ VK+W++ ++ GH G ++ +AVS + +
Sbjct: 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS 574
Query: 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
L AS D V+ +W L +G + L ++ + A+ FSP Y L ++++ G +IWD
Sbjct: 575 LCASGGKDGVVLLWDLAEGKKLYSLEANS-VIHALCFSPNR---YWLCAATEHG-IKIWD 629
Query: 359 ARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYN--ANGTVFVTGS 416
+ + +A + I C + N A+G+ +G
Sbjct: 630 LESKSIVEDLKVDLKAEA--------EKADNSGPAATKRKVIYCTSLNWSADGSTLFSGY 681
Query: 417 SDTFARVW 424
+D RVW
Sbjct: 682 TDGVIRVW 689
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN 296
++L GH V + G+F ++GS D +++W + GH D+ +A S +
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD 483
Query: 297 NTLVASASNDFVIRVWRLPDGLPISVL---RGHTGAVTAIAFSP---RPSAIYQLLSSSD 350
N + SAS D I++W ++ GH V+ + FSP +P+ ++S+S
Sbjct: 484 NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT----IVSASW 539
Query: 351 DGTCRIWD 358
D T ++W+
Sbjct: 540 DKTVKVWN 547
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 560 VLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE 619
+++A D + VWN + L +L GH+ + V P + + S G DG ++WD+ E
Sbjct: 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAE 592
Query: 620 G 620
G
Sbjct: 593 G 593
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 11/120 (9%)
Query: 548 VNMIVWSLDNR-FVLAAIMDCRICVWNAVD-----GSLVHSLTGHSASSYVLDV-HPFNP 600
V I +DN +++A D I +W G LTGHS +V DV +
Sbjct: 385 VTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHS--HFVEDVVLSSDG 442
Query: 601 RIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFK-LVDGKFSPDGTSIVLSDDVGQIYLLNT 659
+ A+S +DG +WD+ G R + +G K ++ FS D IV + I L NT
Sbjct: 443 QFALSGSWDGELRLWDLAAGVSTRRF-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT 501
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 13/140 (9%)
Query: 219 ACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCL 278
A + +A P+ + + + L GHR AV FD +++++ S DR +K+W+ T +
Sbjct: 236 AVWDMASPTDITLR----RVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFV 289
Query: 279 ASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPR 338
+ GH+ I + + LV S S+D IR+W + G + VL GH V I F +
Sbjct: 290 RTLNGHKRGIA--CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK 347
Query: 339 PSAIYQLLSSSDDGTCRIWD 358
+++S + DG ++WD
Sbjct: 348 -----RIVSGAYDGKIKVWD 362
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 18/132 (13%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
++ L GH+ + C + R V++GS D +++W +E CL GHE + +
Sbjct: 289 VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRF 344
Query: 296 NNTLVASASNDFVIRVW--------RLPDG-LPISVLRGHTGAVTAIAFSPRPSAIYQLL 346
+N + S + D I+VW R P G L + L H+G V + F +Q++
Sbjct: 345 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE-----FQIV 399
Query: 347 SSSDDGTCRIWD 358
SSS D T IWD
Sbjct: 400 SSSHDDTILIWD 411
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 92/233 (39%), Gaps = 30/233 (12%)
Query: 245 AVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASAS 304
VYC +D + +++G D +KIW T C GH G + L + + ++ + S
Sbjct: 135 GVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITGS 190
Query: 305 NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFS---------PRPSAIYQLLSSSDDGTCR 355
+D +RVW + G ++ L H AV + F+ R A++ + S +D R
Sbjct: 191 SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 250
Query: 356 IWDARYSQYSPRIYLPKPPDAITGKXXXXX--XXXXXXXXXLQSHQ--ILCCAYNANGTV 411
+ + + + K + +G L H+ I C Y +
Sbjct: 251 VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR--L 308
Query: 412 FVTGSSDTFARVWSA-CKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVAS 463
V+GSSD R+W C + L VL GHE V ++F + S
Sbjct: 309 VVSGSSDNTIRLWDIECGAC----------LRVLEGHEELVRCIRFDNKRIVS 351
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG 607
VN++ D++++++A D I VWN V +L GH L + R+ +S
Sbjct: 259 VNVV--DFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ---YRDRLVVSGS 313
Query: 608 YDGRTIVWDIWEGTPIRIYE 627
D +WDI G +R+ E
Sbjct: 314 SDNTIRLWDIECGACLRVLE 333
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 7/132 (5%)
Query: 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIW----SMETAFCLASCRGHEGD 287
+M + + GH + V + G ++ T S D+ V IW S E C++ + H D
Sbjct: 96 EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD 155
Query: 288 ITDLAVSSNNTLVASASNDFVIRVWR--LPDGLPISVLRGHTGAVTAIAFSPRPSAIYQL 345
+ + + L+AS+S D +R+W+ D ++VL GH G V + F + +++L
Sbjct: 156 VKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDF-DKTEGVFRL 214
Query: 346 LSSSDDGTCRIW 357
S SDD T R+W
Sbjct: 215 CSGSDDSTVRVW 226
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 91/232 (39%), Gaps = 21/232 (9%)
Query: 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA---FCLASCRGHEGDIT 289
+ + L GH + V + SG + T S D+ V +W ++ C++ H D+
Sbjct: 95 FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154
Query: 290 DLAVSSNNTLVASASNDFVIRVWRLP--DGLPISVLRGHTGAVTAIAFSPRPSAIYQLLS 347
+ + L+ASAS D ++++R D + + L GH V ++AF P +L S
Sbjct: 155 HVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ---RLAS 211
Query: 348 SSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNA 407
SDD T RIW R YLP + S I A+
Sbjct: 212 CSDDRTVRIW---------RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ 262
Query: 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD--VLSGHENDVNYVQFS 457
T D RV+ +S D +QP L + H DVN V ++
Sbjct: 263 LTGALATACGDDAIRVFQEDPNS--DPQQPTFSLTAHLHQAHSQDVNCVAWN 312
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 55/121 (45%), Gaps = 7/121 (5%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
LRGH +V G V++GS D + +W + CL GH I
Sbjct: 266 LRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK 323
Query: 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
SAS D IR+W L +G + L+GHT V + S + L+S++ DG+ R WD
Sbjct: 324 RCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF-----LVSAAADGSIRGWD 378
Query: 359 A 359
A
Sbjct: 379 A 379
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 86/224 (38%), Gaps = 38/224 (16%)
Query: 239 LRGHRDAVY-CAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNN 297
LRGH +V C F+ + +VITG+DD++++++ L GH+G + L +
Sbjct: 117 LRGHMTSVITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 174
Query: 298 TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW 357
LV S S D +RVW + G V GH V + + Y +++ S D T +W
Sbjct: 175 ILV-SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY-IVTGSRDNTLHVW 232
Query: 358 D----------ARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNA 407
Y + P+ G L+ H +
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVG--------------VLRGHMASVRTVSG 278
Query: 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDV 451
+G + V+GS D VW + L +LSGH + +
Sbjct: 279 HGNIVVSGSYDNTLIVWDVAQMKC---------LYILSGHTDRI 313
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 38/164 (23%)
Query: 238 KLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI--TDLAVSS 295
+L GH V+ + G +++GS DR V++W ++ C GH + D+
Sbjct: 157 QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 215
Query: 296 NNTLVASASNDFVIRVWRLP--DGLP---------------------ISVLRGHTGAVTA 332
N + + S D + VW+LP +P + VLRGH +V
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 275
Query: 333 IAFSPRPSAIYQLLSSSDDGTCRIWDAR-------YSQYSPRIY 369
++ ++S S D T +WD S ++ RIY
Sbjct: 276 VSGHGNI-----VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY 314
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDIT 289
V +M+ + L GH D +Y I+D + I+ S D ++IW +E + + +GH +
Sbjct: 297 VAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVG 356
Query: 290 DLAVSSNNTLVASASNDFVIRVWRLPD 316
L +S + + SA+ D IR W D
Sbjct: 357 LLRLS--DKFLVSAAADGSIRGWDAND 381
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 74/394 (18%), Positives = 143/394 (36%), Gaps = 105/394 (26%)
Query: 305 NDFVIRVWRLPDGLPI-SVLRGH-TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYS 362
N F+++ W P +P + LRGH T +T + F +++ +DD R++D+
Sbjct: 98 NIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDN-----YVITGADDKMIRVYDSINK 152
Query: 363 QYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQ--ILCCAYNANGTVFVTGSSDTF 420
++ + L H + Y A+G + V+GS+D
Sbjct: 153 KFLLQ---------------------------LSGHDGGVWALKY-AHGGILVSGSTDRT 184
Query: 421 ARVW----SACKSSVEDSEQPIHELDVLSGHENDVNYV-------QFSGCAVASRSAMSD 469
RVW C E + LD++ ++ Y+ + S++ D
Sbjct: 185 VRVWDIKKGCCTHVFEGHNSTVRCLDIVE--YKNIKYIVTGSRDNTLHVWKLPKESSVPD 242
Query: 470 AFKEENVPKF-----KNSWFC---------------HDNIVTC-SRDGSAIIW-IPRSRR 507
+E + P +N +F H NIV S D + I+W + + +
Sbjct: 243 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC 302
Query: 508 SHGKVGRWTRAYHLKVXXXXXXXXXXXXXXXXXXXXXXXXVNMIVWSLDNRFVLAAIMDC 567
+ G R Y ++ + + ++A MD
Sbjct: 303 LYILSGHTDRIYS------------------------------TIYDHERKRCISASMDT 332
Query: 568 RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE 627
I +W+ +G L+++L GH+A ++ + + + +SA DG WD + + Y
Sbjct: 333 TIRIWDLENGELMYTLQGHTA---LVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH 389
Query: 628 IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661
+ + D + S++ IY L +G+
Sbjct: 390 HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGK 423
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT 298
LRGH +V G V++GS D + +W + CL GH I
Sbjct: 266 LRGHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERK 323
Query: 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
SAS D IR+W L +G L+GHT V + S + L+S++ DG+ R WD
Sbjct: 324 RCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKF-----LVSAAADGSIRGWD 378
Query: 359 A 359
A
Sbjct: 379 A 379
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 85/224 (37%), Gaps = 38/224 (16%)
Query: 239 LRGHRDAVY-CAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNN 297
LRGH +V C F+ + +VITG+DD+ ++++ L GH+G + L +
Sbjct: 117 LRGHXTSVITCLQFEDN--YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 174
Query: 298 TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW 357
LV S S D +RVW + G V GH V + + Y +++ S D T +W
Sbjct: 175 ILV-SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY-IVTGSRDNTLHVW 232
Query: 358 D----------ARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNA 407
Y + P+ G L+ H +
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVG--------------VLRGHXASVRTVSG 278
Query: 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDV 451
+G + V+GS D VW + L +LSGH + +
Sbjct: 279 HGNIVVSGSYDNTLIVWDVAQXKC---------LYILSGHTDRI 313
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 38/164 (23%)
Query: 238 KLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI--TDLAVSS 295
+L GH V+ + G +++GS DR V++W ++ C GH + D+
Sbjct: 157 QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 215
Query: 296 NNTLVASASNDFVIRVWRLP--DGLP---------------------ISVLRGHTGAVTA 332
N + + S D + VW+LP +P + VLRGH +V
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRT 275
Query: 333 IAFSPRPSAIYQLLSSSDDGTCRIWDAR-------YSQYSPRIY 369
++ ++S S D T +WD S ++ RIY
Sbjct: 276 VSGHGNI-----VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIY 314
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 73/394 (18%), Positives = 141/394 (35%), Gaps = 105/394 (26%)
Query: 305 NDFVIRVWRLPDGLPI-SVLRGH-TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYS 362
N F+++ W P +P + LRGH T +T + F +++ +DD R++D+
Sbjct: 98 NIFILKNWYNPKFVPQRTTLRGHXTSVITCLQFEDN-----YVITGADDKXIRVYDSINK 152
Query: 363 QYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQ--ILCCAYNANGTVFVTGSSDTF 420
++ + L H + Y A+G + V+GS+D
Sbjct: 153 KFLLQ---------------------------LSGHDGGVWALKY-AHGGILVSGSTDRT 184
Query: 421 ARVW----SACKSSVEDSEQPIHELDVLSGHENDVNYV-------QFSGCAVASRSAMSD 469
RVW C E + LD++ ++ Y+ + S++ D
Sbjct: 185 VRVWDIKKGCCTHVFEGHNSTVRCLDIVE--YKNIKYIVTGSRDNTLHVWKLPKESSVPD 242
Query: 470 AFKEENVPKF-----KNSWFC---------------HDNIVTC-SRDGSAIIW-IPRSRR 507
+E + P +N +F H NIV S D + I+W + + +
Sbjct: 243 HGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKC 302
Query: 508 SHGKVGRWTRAYHLKVXXXXXXXXXXXXXXXXXXXXXXXXVNMIVWSLDNRFVLAAIMDC 567
+ G R Y ++ + + ++A D
Sbjct: 303 LYILSGHTDRIYS------------------------------TIYDHERKRCISASXDT 332
Query: 568 RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE 627
I +W+ +G L ++L GH+A ++ + + + +SA DG WD + + Y
Sbjct: 333 TIRIWDLENGELXYTLQGHTA---LVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH 389
Query: 628 IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661
+ + D + S++ IY L +G+
Sbjct: 390 HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGK 423
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 25/185 (13%)
Query: 242 HRDAVYCAIFDRS--GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTL 299
H D V C F S +++G D LVK+W + T + +GH +T + VS + +L
Sbjct: 151 HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSL 210
Query: 300 VASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
AS+ D V R+W L G +S + + I FSP Y + ++++ G RI+D
Sbjct: 211 CASSDKDGVARLWDLTKGEALSEMAA-GAPINQICFSPNR---YWMCAATEKGI-RIFDL 265
Query: 360 RYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDT 419
+ I + P+ K + + A++A+G+ +G +D
Sbjct: 266 E----NKDIIVELAPEHQGSKKIVP--------------ECVSIAWSADGSTLYSGYTDN 307
Query: 420 FARVW 424
RVW
Sbjct: 308 VIRVW 312
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Query: 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN 296
++L GH V +G F ++ S D +++W+++ C GH D+ +A S +
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 297 NTLVASASNDFVIRVWRLPDGLPISVLRG-HTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355
N + S D +RVW + ++ RG HT V+ + FSP A ++S D +
Sbjct: 121 NRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPV-IVSGGWDNLVK 179
Query: 356 IWD 358
+WD
Sbjct: 180 VWD 182
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTI 613
SLD +++ D + VW+ G LV L GH+ + V P + + S+ DG
Sbjct: 163 SLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP-DGSLCASSDKDGVAR 221
Query: 614 VWDIWEGTPI 623
+WD+ +G +
Sbjct: 222 LWDLTKGEAL 231
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 86/199 (43%), Gaps = 26/199 (13%)
Query: 185 LRWPHMQADQVHGLSLREIGGGFKKHHRAPSVCS----ACYAIAKPSTMVQKMQNI---- 236
+ W DQ G+ +R FK H C+ YA++ ++ ++
Sbjct: 43 ISWKLTGDDQKFGVPVRS----FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE 98
Query: 237 --KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVS 294
++ GH+ V D+ +I+GS D+ +K+W+++ CLA+ GH ++ + V
Sbjct: 99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVV 157
Query: 295 SN------NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS 348
N + + SA ND +++ W L + GH + + SP + I S+
Sbjct: 158 PNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI---ASA 214
Query: 349 SDDGTCRIWD--ARYSQYS 365
DG +W+ A+ + Y+
Sbjct: 215 GKDGEIMLWNLAAKKAMYT 233
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 73/199 (36%), Gaps = 28/199 (14%)
Query: 232 KMQNIKKLRGHRDAVYCAIF------DRSGRFVITGSDDRLVKIWSMETAFCLASCRGHE 285
K Q + L GH D V D +I+ +D++VK W++ A GH
Sbjct: 137 KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN 196
Query: 286 GDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQL 345
+I L S + TL+ASA D I +W L + L V ++AFSP
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPN------- 248
Query: 346 LSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAY 405
R W A + +++ P + + H + A+
Sbjct: 249 ---------RYWLAAATATGIKVFSLDPQYLV----DDLRPEFAGYSKAAEPHAV-SLAW 294
Query: 406 NANGTVFVTGSSDTFARVW 424
+A+G G +D RVW
Sbjct: 295 SADGQTLFAGYTDNVIRVW 313
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 86/199 (43%), Gaps = 26/199 (13%)
Query: 185 LRWPHMQADQVHGLSLREIGGGFKKHHRAPSVCS----ACYAIAKPSTMVQKMQNI---- 236
+ W DQ G+ +R FK H C+ YA++ ++ ++
Sbjct: 43 ISWKLTGDDQKFGVPVRS----FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE 98
Query: 237 --KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVS 294
++ GH+ V D+ +I+GS D+ +K+W+++ CLA+ GH ++ + V
Sbjct: 99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVV 157
Query: 295 SN------NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS 348
N + + SA ND +++ W L + GH + + SP + I S+
Sbjct: 158 PNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI---ASA 214
Query: 349 SDDGTCRIWD--ARYSQYS 365
DG +W+ A+ + Y+
Sbjct: 215 GKDGEIMLWNLAAKKAMYT 233
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 73/199 (36%), Gaps = 28/199 (14%)
Query: 232 KMQNIKKLRGHRDAVYCAIF------DRSGRFVITGSDDRLVKIWSMETAFCLASCRGHE 285
K Q + L GH D V D +I+ +D++VK W++ A GH
Sbjct: 137 KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN 196
Query: 286 GDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQL 345
+I L S + TL+ASA D I +W L + L V ++AFSP
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPN------- 248
Query: 346 LSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAY 405
R W A + +++ P + + H + A+
Sbjct: 249 ---------RYWLAAATATGIKVFSLDPQYLV----DDLRPEFAGYSKAAEPHAV-SLAW 294
Query: 406 NANGTVFVTGSSDTFARVW 424
+A+G G +D RVW
Sbjct: 295 SADGQTLFAGYTDNVIRVW 313
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 86/199 (43%), Gaps = 26/199 (13%)
Query: 185 LRWPHMQADQVHGLSLREIGGGFKKHHRAPSVCS----ACYAIAKPSTMVQKMQNI---- 236
+ W DQ G+ +R FK H C+ YA++ ++ ++
Sbjct: 43 ISWKLTGDDQKFGVPVRS----FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE 98
Query: 237 --KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVS 294
++ GH+ V D+ +I+GS D+ +K+W+++ CLA+ GH ++ + V
Sbjct: 99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVV 157
Query: 295 SN------NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS 348
N + + SA ND +++ W L + GH + + SP + I S+
Sbjct: 158 PNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI---ASA 214
Query: 349 SDDGTCRIWD--ARYSQYS 365
DG +W+ A+ + Y+
Sbjct: 215 GKDGEIMLWNLAAKKAMYT 233
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 73/199 (36%), Gaps = 28/199 (14%)
Query: 232 KMQNIKKLRGHRDAVYCAIF------DRSGRFVITGSDDRLVKIWSMETAFCLASCRGHE 285
K Q + L GH D V D +I+ +D++VK W++ A GH
Sbjct: 137 KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN 196
Query: 286 GDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQL 345
+I L S + TL+ASA D I +W L + L V ++AFSP
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPN------- 248
Query: 346 LSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAY 405
R W A + +++ P + + H + A+
Sbjct: 249 ---------RYWLAAATATGIKVFSLDPQYLV----DDLRPEFAGYSKAAEPHAV-SLAW 294
Query: 406 NANGTVFVTGSSDTFARVW 424
+A+G G +D RVW
Sbjct: 295 SADGQTLFAGYTDNVIRVW 313
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 86/199 (43%), Gaps = 26/199 (13%)
Query: 185 LRWPHMQADQVHGLSLREIGGGFKKHHRAPSVCS----ACYAIAKPSTMVQKMQNI---- 236
+ W DQ G+ +R FK H C+ YA++ ++ ++
Sbjct: 43 ISWKLTGDDQKFGVPVRS----FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE 98
Query: 237 --KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVS 294
++ GH+ V D+ +I+GS D+ +K+W+++ CLA+ GH ++ + V
Sbjct: 99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVV 157
Query: 295 SN------NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS 348
N + + SA ND +++ W L + GH + + SP + I S+
Sbjct: 158 PNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI---ASA 214
Query: 349 SDDGTCRIWD--ARYSQYS 365
DG +W+ A+ + Y+
Sbjct: 215 GKDGEIMLWNLAAKKAMYT 233
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 73/199 (36%), Gaps = 28/199 (14%)
Query: 232 KMQNIKKLRGHRDAVYCAIF------DRSGRFVITGSDDRLVKIWSMETAFCLASCRGHE 285
K Q + L GH D V D +I+ +D++VK W++ A GH
Sbjct: 137 KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN 196
Query: 286 GDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQL 345
+I L S + TL+ASA D I +W L + L V ++AFSP
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPN------- 248
Query: 346 LSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAY 405
R W A + +++ P + + H + A+
Sbjct: 249 ---------RYWLAAATATGIKVFSLDPQYLV----DDLRPEFAGYSAAAEPHAV-SLAW 294
Query: 406 NANGTVFVTGSSDTFARVW 424
+A+G G +D RVW
Sbjct: 295 SADGQTLFAGYTDNVIRVW 313
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 86/199 (43%), Gaps = 26/199 (13%)
Query: 185 LRWPHMQADQVHGLSLREIGGGFKKHHRAPSVCS----ACYAIAKPSTMVQKMQNI---- 236
+ W DQ G+ +R FK H C+ YA++ ++ ++
Sbjct: 37 ISWKLTGDDQKFGVPVRS----FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE 92
Query: 237 --KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVS 294
++ GH+ V D+ +I+GS D+ +K+W+++ CLA+ GH ++ + V
Sbjct: 93 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVV 151
Query: 295 SN------NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS 348
N + + SA ND +++ W L + GH + + SP + I S+
Sbjct: 152 PNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI---ASA 208
Query: 349 SDDGTCRIWD--ARYSQYS 365
DG +W+ A+ + Y+
Sbjct: 209 GKDGEIMLWNLAAKKAMYT 227
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 73/199 (36%), Gaps = 28/199 (14%)
Query: 232 KMQNIKKLRGHRDAVYCAIF------DRSGRFVITGSDDRLVKIWSMETAFCLASCRGHE 285
K Q + L GH D V D +I+ +D++VK W++ A GH
Sbjct: 131 KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN 190
Query: 286 GDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQL 345
+I L S + TL+ASA D I +W L + L V ++AFSP
Sbjct: 191 SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPN------- 242
Query: 346 LSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAY 405
R W A + +++ P + + H + A+
Sbjct: 243 ---------RYWLAAATATGIKVFSLDPQYLV----DDLRPEFAGYSKAAEPHAV-SLAW 288
Query: 406 NANGTVFVTGSSDTFARVW 424
+A+G G +D RVW
Sbjct: 289 SADGQTLFAGYTDNVIRVW 307
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 256 RFVITGSDDRLVKIWSM---ETAFCLASCR-GHEGDITDLAVSSNNTLVASASNDFVIRV 311
R ++ SD V++W + ET C+ H+ ++ ++V S+ T S S D I+V
Sbjct: 94 RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKV 153
Query: 312 WRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRI--- 368
W L + +S R H VT +A SP +++ LS S+D +WD R + + +I
Sbjct: 154 WDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF--LSCSEDNRILLWDTRCPKPASQIGCS 211
Query: 369 ---YLP 371
YLP
Sbjct: 212 APGYLP 217
Score = 37.7 bits (86), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
Query: 242 HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN-NTLV 300
H D V SG ++GS D +K+W + L+S R H +T +A S + +++
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 301 ASASNDFVIRVWRLPDGLPISVLRGHTGAV--TAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
S S D I +W P S + T++A+ P+ S ++ ++GT + D
Sbjct: 186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVF--GDENGTVSLVD 243
Query: 359 AR 360
+
Sbjct: 244 TK 245
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 95/256 (37%), Gaps = 46/256 (17%)
Query: 213 APSVCS-ACYAIAKPSTM----VQKMQNI----KKLRGHRDAVYCAIFDRSGRFVITGSD 263
APS C+ AC + ++ K +N+ K + H + + F S ++T S
Sbjct: 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG 174
Query: 264 DRLVKIWSMETAFCLASCRGHEGDI--TDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS 321
D +W +E+ L S GH D+ DLA S S D VW + G +
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234
Query: 322 VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKX 381
H V ++ + P A S SDD TCR++D R + + + I G
Sbjct: 235 AFETHESDVNSVRYYPSGDA---FASGSDDATCRLYDLRADR---EVAIYSKESIIFGAS 288
Query: 382 XXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHEL 441
++ +G + G +D VW K S +
Sbjct: 289 SVD--------------------FSLSGRLLFAGYNDYTINVWDVLKGS---------RV 319
Query: 442 DVLSGHENDVNYVQFS 457
+L GHEN V+ ++ S
Sbjct: 320 SILFGHENRVSTLRVS 335
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 65/174 (37%), Gaps = 49/174 (28%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIF--DRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGD 287
V+ Q ++ GH V C +G ++G D+ +W M + C+ + HE D
Sbjct: 183 VESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESD 242
Query: 288 IT-----------------------------DLAVSSNNTLVASAS-------------- 304
+ ++A+ S +++ AS
Sbjct: 243 VNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAG 302
Query: 305 -NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW 357
ND+ I VW + G +S+L GH V+ + SP +A S S D T R+W
Sbjct: 303 YNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTA---FCSGSWDHTLRVW 353
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 560 VLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP-RIAMSAGYDGRTIVWDIW 618
+L A D +W+ G L+ S GH A LD+ P +S G D + +VWD+
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR 228
Query: 619 EGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDD 650
G ++ +E + ++ P G + D
Sbjct: 229 SGQCVQAFETHESDVNSVRYYPSGDAFASGSD 260
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 95/260 (36%), Gaps = 81/260 (31%)
Query: 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWS-----------------META 275
M+ + L+GH + V C + + R +++ S D V +W M A
Sbjct: 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACA 113
Query: 276 F----CLASCRG--HEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGA 329
+ C +C G ++ + L N + A + + HT
Sbjct: 114 YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKS-----------------VAMHTNY 156
Query: 330 VTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXX 389
++A +F+ ++ Q+L++S DGTC +WD Q +
Sbjct: 157 LSACSFT---NSDMQILTASGDGTCALWDVESGQLLQSFH-------------------- 193
Query: 390 XXXXXLQSHQILC--CAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGH 447
+LC A + G FV+G D A VW S Q + + H
Sbjct: 194 -----GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM------RSGQCVQAFET---H 239
Query: 448 ENDVNYVQF--SGCAVASRS 465
E+DVN V++ SG A AS S
Sbjct: 240 ESDVNSVRYYPSGDAFASGS 259
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 94/228 (41%), Gaps = 38/228 (16%)
Query: 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN 296
+ L+GH VY + ++++ S D + +W+ T+ + + H + + A + N
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 297 NTLVASASNDFVIRVWRLP-----DG-LPIS-VLRGHTGAVTAIAFSPRPSAIYQLLSSS 349
VA D ++ L DG +P+S VL GH G ++ + P +L++ S
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET--RLITGS 177
Query: 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNA-N 408
D TC +WD Q I+ + P T +L + N+ N
Sbjct: 178 GDQTCVLWDVTTGQ-RISIFGSEFPSGHTA-------------------DVLSLSINSLN 217
Query: 409 GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF 456
+F++GS DT R+W D + GHE D+N V+F
Sbjct: 218 ANMFISGSCDTTVRLW--------DLRITSRAVRTYHGHEGDINSVKF 257
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 237 KKLRGHRD-AVYCAIFDRSGRFVITGSDDRLVKIWSMETA-----FCLASCRGHEGDITD 290
+ L GH+ A C +ITGS D+ +W + T F GH D+
Sbjct: 151 RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS 210
Query: 291 LAVSS-NNTLVASASNDFVIRVWRL-PDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS 348
L+++S N + S S D +R+W L + GH G + ++ F P + +
Sbjct: 211 LSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ---RFGTG 267
Query: 349 SDDGTCRIWDARYSQYSPRIYLPKP 373
SDDGTCR++D R + + ++Y +P
Sbjct: 268 SDDGTCRLFDMR-TGHQLQVYNREP 291
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 33/194 (17%)
Query: 241 GHR-DAVYCAIFDRSGRFVITGSDDRLVKIWSME-TAFCLASCRGHEGDITDLAVSSNNT 298
GH D + +I + I+GS D V++W + T+ + + GHEGDI + +
Sbjct: 203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ 262
Query: 299 LVASASNDFVIRVWRLPDGLPISVLR-------GHTGAVTAIAFSPRPSAIYQLLSSSDD 351
+ S+D R++ + G + V VT++AFS ++ S+ D
Sbjct: 263 RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD- 321
Query: 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTV 411
C +WD ++ + L ++ G+ I C +++G+
Sbjct: 322 --CYVWDTLLAEMV--LNLGTLQNSHEGR-------------------ISCLGLSSDGSA 358
Query: 412 FVTGSSDTFARVWS 425
TGS D ++W+
Sbjct: 359 LCTGSWDKNLKIWA 372
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 572 WNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRF 631
+N D +L GHS Y LD P I +SA DGR IVW+ ++
Sbjct: 51 FNPTDLVCCRTLQGHSGKVYSLDWTPEKNWI-VSASQDGRLIVWNALTSQKTHAIKLHCP 109
Query: 632 KLVDGKFSPDGTSIVLS--DDVGQIYLLNTGQGESQKDAKYDQFFLGDYRPLIRDSLGNV 689
+++ F+P+G S+ D I+ L++ Q + + + G S V
Sbjct: 110 WVMECAFAPNGQSVACGGLDSACSIFNLSS-QADRDGNMPVSRVLTG--HKGYASSCQYV 166
Query: 690 LDQETQLV 697
DQET+L+
Sbjct: 167 PDQETRLI 174
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 18/141 (12%)
Query: 233 MQNIKK--LRGHRDAVYCAIFDRSGR------FVITGSDDRLVKIWSM-----ETAFCL- 278
+Q +K+ L GH D V + S + +I+GS D+ V IW + F +
Sbjct: 9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIP 68
Query: 279 -ASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP 337
+ GH ++DLA+S N S+S D +R+W L G GH V ++AFSP
Sbjct: 69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP 128
Query: 338 RPSAIYQLLSSSDDGTCRIWD 358
Q+LS+ + ++W+
Sbjct: 129 DNR---QILSAGAEREIKLWN 146
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
Query: 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN 296
K L GH V + F I+ S D+ +++W + T GH+ ++ +A S +
Sbjct: 70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD 129
Query: 297 NTLVASASNDFVIRVWRLPDGLPISVL--RGHTGAVTAIAFSP--------RPSAIYQLL 346
N + SA + I++W + S H+ V+ + +SP +P A Y
Sbjct: 130 NRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPY-FA 188
Query: 347 SSSDDGTCRIWDARY 361
S DG ++W+ +
Sbjct: 189 SVGWDGRLKVWNTNF 203
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVL------------DV 595
V + +S DNR +L+A + I +WN + S + S +V V
Sbjct: 121 VYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKV 180
Query: 596 HPFNPRIAMSAGYDGRTIVWD 616
PF P A S G+DGR VW+
Sbjct: 181 QPFAPYFA-SVGWDGRLKVWN 200
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 20/114 (17%)
Query: 257 FVITGSDDRLVKIWSMETAFCL-ASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP 315
F G D RL K+W+ T F + + + HE ++ L++S N +A+ D + +W
Sbjct: 187 FASVGWDGRL-KVWN--TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW--- 240
Query: 316 DGLPISVLRGHTGA---VTAIAFSPRPS----------AIYQLLSSSDDGTCRI 356
D L ++ + A + IAF+P+ I+ L++ S C I
Sbjct: 241 DILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTI 294
Score = 30.4 bits (67), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTI 613
S +N F +++ D + +W+ G+ GH + Y + P N +I +SAG +
Sbjct: 85 SQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI-LSAGAEREIK 143
Query: 614 VWDI 617
+W+I
Sbjct: 144 LWNI 147
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 54.3 bits (129), Expect = 6e-07, Method: Composition-based stats.
Identities = 45/199 (22%), Positives = 85/199 (42%), Gaps = 26/199 (13%)
Query: 185 LRWPHMQADQVHGLSLREIGGGFKKHHRAPSVCS----ACYAIAKPSTMVQKMQNI---- 236
+ W DQ G+ +R FK H C+ YA++ ++ ++
Sbjct: 43 ISWKLTGDDQKFGVPVRS----FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE 98
Query: 237 --KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVS 294
++ GH+ V D+ +I+GS D+ +K+W+++ CLA+ GH ++ + V
Sbjct: 99 TYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVV 157
Query: 295 SN------NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS 348
N + + SA ND ++ W L + GH + + SP + I S+
Sbjct: 158 PNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI---ASA 214
Query: 349 SDDGTCRIWD--ARYSQYS 365
DG +W+ A+ + Y+
Sbjct: 215 GKDGEIXLWNLAAKKAXYT 233
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 47/199 (23%), Positives = 71/199 (35%), Gaps = 28/199 (14%)
Query: 232 KMQNIKKLRGHRDAVYCAIF------DRSGRFVITGSDDRLVKIWSMETAFCLASCRGHE 285
K Q + L GH D V D +I+ +D+ VK W++ A GH
Sbjct: 137 KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHN 196
Query: 286 GDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQL 345
+I L S + TL+ASA D I +W L L V ++AFSP
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQD-EVFSLAFSPN------- 248
Query: 346 LSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAY 405
R W A + +++ P + + H + A+
Sbjct: 249 ---------RYWLAAATATGIKVFSLDPQYLV----DDLRPEFAGYSKAAEPHAV-SLAW 294
Query: 406 NANGTVFVTGSSDTFARVW 424
+A+G G +D RVW
Sbjct: 295 SADGQTLFAGYTDNVIRVW 313
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Query: 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN 296
+ LRGH V + G+F ++GS D +++W + T GH D+ +A SS+
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 297 NTLVASASNDFVIRVWRLPDGLPISVL-RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355
N + S S D I++W +V H+ V+ + FSP S ++S D +
Sbjct: 140 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI-IVSCGWDKLVK 198
Query: 356 IWD 358
+W+
Sbjct: 199 VWN 201
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 23/185 (12%)
Query: 242 HRDAVYCAIF--DRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTL 299
H + V C F + S +++ D+LVK+W++ + GH G + + VS + +L
Sbjct: 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL 229
Query: 300 VASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
AS D +W L +G + L G + A+ FSP Y L +++ + +IWD
Sbjct: 230 CASGGKDGQAMLWDLNEGKHLYTLDGGD-IINALCFSPNR---YWLCAATGP-SIKIWDL 284
Query: 360 RYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDT 419
+I + + + + Q A++A+G G +D
Sbjct: 285 E-----GKIIVDELKQEVISTSSKA-----------EPPQCTSLAWSADGQTLFAGYTDN 328
Query: 420 FARVW 424
RVW
Sbjct: 329 LVRVW 333
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 37/164 (22%)
Query: 279 ASCRGHEGDITDLAVSSNN-TLVASASNDFVIRVWRLPD-----GLPISVLRGHTGAVTA 332
+ +GH G +T +A + ++ SAS D I +W+L G+P LRGH+ V+
Sbjct: 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 91
Query: 333 IAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXX 392
+ S LS S DGT R+WD + R ++ D
Sbjct: 92 VVISSDGQFA---LSGSWDGTLRLWDLTTGTTTRR-FVGHTKD----------------- 130
Query: 393 XXLQSHQILCCAYNANGTVFVTGSSDTFARVWS---ACKSSVED 433
+L A++++ V+GS D ++W+ CK +V+D
Sbjct: 131 -------VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD 167
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 557 NRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616
N +++ D + VWN + L + GH+ + V P + + S G DG+ ++WD
Sbjct: 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWD 243
Query: 617 IWEGTPIRIYEIGRFKLVDGK-FSPD--------GTSIVLSDDVGQIYL 656
+ EG +Y + +++ FSP+ G SI + D G+I +
Sbjct: 244 LNEGK--HLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIV 290
Score = 31.2 bits (69), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 551 IVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPR----IAMSA 606
+ +S DNR +++ D I +WN + G +++ S S +V V F+P I +S
Sbjct: 134 VAFSSDNRQIVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVR-FSPNSSNPIIVSC 191
Query: 607 GYDGRTIVWDIWEGTPIRIYEIGRFKLVDG-KFSPDGTSIVLSDDVGQIYLLNTGQGE 663
G+D VW++ ++ IG ++ SPDG+ GQ L + +G+
Sbjct: 192 GWDKLVKVWNL-ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 248
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Query: 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN 296
+ LRGH V + G+F ++GS D +++W + T GH D+ +A SS+
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 297 NTLVASASNDFVIRVWRLPDGLPISVL-RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355
N + S S D I++W +V H+ V+ + FSP S ++S D +
Sbjct: 117 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI-IVSCGWDKLVK 175
Query: 356 IWD 358
+W+
Sbjct: 176 VWN 178
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 23/185 (12%)
Query: 242 HRDAVYCAIF--DRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTL 299
H + V C F + S +++ D+LVK+W++ + GH G + + VS + +L
Sbjct: 147 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL 206
Query: 300 VASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359
AS D +W L +G + L G + A+ FSP Y L +++ + +IWD
Sbjct: 207 CASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNR---YWLCAATGP-SIKIWD- 260
Query: 360 RYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNANGTVFVTGSSDT 419
+I + + + + Q A++A+G G +D
Sbjct: 261 ----LEGKIIVDELKQEVISTSSKA-----------EPPQCTSLAWSADGQTLFAGYTDN 305
Query: 420 FARVW 424
RVW
Sbjct: 306 LVRVW 310
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 37/164 (22%)
Query: 279 ASCRGHEGDITDLAVSSNN-TLVASASNDFVIRVWRLPD-----GLPISVLRGHTGAVTA 332
+ +GH G +T +A + ++ SAS D I +W+L G+P LRGH+ V+
Sbjct: 9 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 68
Query: 333 IAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXX 392
+ S LS S DGT R+WD + R ++ D
Sbjct: 69 VVISSDGQFA---LSGSWDGTLRLWDLTTGTTTRR-FVGHTKD----------------- 107
Query: 393 XXLQSHQILCCAYNANGTVFVTGSSDTFARVWS---ACKSSVED 433
+L A++++ V+GS D ++W+ CK +V+D
Sbjct: 108 -------VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD 144
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 557 NRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616
N +++ D + VWN + L + GH+ + V P + + S G DG+ ++WD
Sbjct: 162 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWD 220
Query: 617 IWEGTPIRIYEIGRFKLVDGK-FSPD--------GTSIVLSDDVGQIYL 656
+ EG +Y + +++ FSP+ G SI + D G+I +
Sbjct: 221 LNEGK--HLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIV 267
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 551 IVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPR----IAMSA 606
+ +S DNR +++ D I +WN + G +++ S S +V V F+P I +S
Sbjct: 111 VAFSSDNRQIVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVR-FSPNSSNPIIVSC 168
Query: 607 GYDGRTIVWDIWEGTPIRIYEIGRFKLVDG-KFSPDGTSIVLSDDVGQIYLLNTGQGE 663
G+D VW++ ++ IG ++ SPDG+ GQ L + +G+
Sbjct: 169 GWDKLVKVWNL-ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 225
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/253 (18%), Positives = 89/253 (35%), Gaps = 29/253 (11%)
Query: 206 GFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDR 265
G H P V + Y+ + ++ ++ V F ++I GSDD
Sbjct: 18 GIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77
Query: 266 LVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPI-SVLR 324
+++++ T + H I +AV V S S+D +++W + +
Sbjct: 78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137
Query: 325 GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD-----------------ARYSQYSPR 367
GH V +AF+P+ + + S D T ++W Y Y P
Sbjct: 138 GHEHFVMCVAFNPKDPSTFA--SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP- 194
Query: 368 IYLPKPPDAITGKXXXXXX----XXXXXXXXLQSHQ--ILCCAYNANGTVFVTGSSDTFA 421
LP P IT L+ H + ++ + ++GS D
Sbjct: 195 --LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 422 RVWSACKSSVEDS 434
++W++ VE +
Sbjct: 253 KIWNSSTYKVEKT 265
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 87/224 (38%), Gaps = 37/224 (16%)
Query: 235 NIKKLRGHR-DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV 293
+IKK +R D V F + +V+T V+IW+ ET + S + E +
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKF 63
Query: 294 SSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGT 353
+ + S+DF IRV+ G + H + +IA P + LS SDD T
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYV---LSGSDDLT 120
Query: 354 CRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYN-ANGTVF 412
++W+ + + + H ++C A+N + + F
Sbjct: 121 VKLWNWENNWALEQTF------------------------EGHEHFVMCVAFNPKDPSTF 156
Query: 413 VTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF 456
+G D +VWS +S+ + +G E VNYV +
Sbjct: 157 ASGCLDRTVKVWSLGQST--------PNFTLTTGQERGVNYVDY 192
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 593 LDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVG 652
+D HP P + ++ Y GR +W+ +R ++ + GKF I++ D
Sbjct: 19 IDFHPTEPWV-LTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77
Query: 653 QIYLLNTGQGESQKD 667
+I + N GE D
Sbjct: 78 RIRVFNYNTGEKVVD 92
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 556 DNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVW 615
D +++ A D I +W+ S V +L GH ++ HP P I +S DG +W
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIW 255
Query: 616 D 616
+
Sbjct: 256 N 256
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/253 (18%), Positives = 89/253 (35%), Gaps = 29/253 (11%)
Query: 206 GFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDR 265
G H P V + Y+ + ++ ++ V F ++I GSDD
Sbjct: 18 GIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77
Query: 266 LVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPI-SVLR 324
+++++ T + H I +AV V S S+D +++W + +
Sbjct: 78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137
Query: 325 GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD-----------------ARYSQYSPR 367
GH V +AF+P+ + + S D T ++W Y Y P
Sbjct: 138 GHEHFVMCVAFNPKDPSTFA--SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP- 194
Query: 368 IYLPKPPDAITGKXXXXXX----XXXXXXXXLQSHQ--ILCCAYNANGTVFVTGSSDTFA 421
LP P IT L+ H + ++ + ++GS D
Sbjct: 195 --LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 422 RVWSACKSSVEDS 434
++W++ VE +
Sbjct: 253 KIWNSSTYKVEKT 265
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 87/224 (38%), Gaps = 37/224 (16%)
Query: 235 NIKKLRGHR-DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV 293
+IKK +R D V F + +V+T V++W+ ET + S + E +
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 294 SSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGT 353
+ + S+DF IRV+ G + H + +IA P + LS SDD T
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYV---LSGSDDLT 120
Query: 354 CRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYN-ANGTVF 412
++W+ + + + H ++C A+N + + F
Sbjct: 121 VKLWNWENNWALEQTF------------------------EGHEHFVMCVAFNPKDPSTF 156
Query: 413 VTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF 456
+G D +VWS +S+ + +G E VNYV +
Sbjct: 157 ASGCLDRTVKVWSLGQST--------PNFTLTTGQERGVNYVDY 192
Score = 30.8 bits (68), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 593 LDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVG 652
+D HP P + ++ Y GR +W+ +R ++ + GKF I++ D
Sbjct: 19 IDFHPTEPWV-LTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77
Query: 653 QIYLLNTGQGESQKD 667
+I + N GE D
Sbjct: 78 RIRVFNYNTGEKVVD 92
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/253 (18%), Positives = 89/253 (35%), Gaps = 29/253 (11%)
Query: 206 GFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDR 265
G H P V + Y+ + ++ ++ V F ++I GSDD
Sbjct: 18 GIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77
Query: 266 LVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPI-SVLR 324
+++++ T + H I +AV V S S+D +++W + +
Sbjct: 78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137
Query: 325 GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD-----------------ARYSQYSPR 367
GH V +AF+P+ + + S D T ++W Y Y P
Sbjct: 138 GHEHFVMCVAFNPKDPSTFA--SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP- 194
Query: 368 IYLPKPPDAITGKXXXXXX----XXXXXXXXLQSHQ--ILCCAYNANGTVFVTGSSDTFA 421
LP P IT L+ H + ++ + ++GS D
Sbjct: 195 --LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 422 RVWSACKSSVEDS 434
++W++ VE +
Sbjct: 253 KIWNSSTYKVEKT 265
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 87/224 (38%), Gaps = 37/224 (16%)
Query: 235 NIKKLRGHR-DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV 293
+IKK +R D V F + +V+T V++W+ ET + S + E +
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 294 SSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGT 353
+ + S+DF IRV+ G + H + +IA P + LS SDD T
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYV---LSGSDDLT 120
Query: 354 CRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYN-ANGTVF 412
++W+ + + + H ++C A+N + + F
Sbjct: 121 VKLWNWENNWALEQTF------------------------EGHEHFVMCVAFNPKDPSTF 156
Query: 413 VTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF 456
+G D +VWS +S+ + +G E VNYV +
Sbjct: 157 ASGCLDRTVKVWSLGQST--------PNFTLTTGQERGVNYVDY 192
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 593 LDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVG 652
+D HP P + ++ Y GR +W+ +R ++ + GKF I++ D
Sbjct: 19 IDFHPTEPWV-LTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77
Query: 653 QIYLLNTGQGESQKD 667
+I + N GE D
Sbjct: 78 RIRVFNYNTGEKVVD 92
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 556 DNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVW 615
D +++ A D I +W+ S V +L GH ++ HP P I +S DG +W
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIW 255
Query: 616 D 616
+
Sbjct: 256 N 256
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/253 (18%), Positives = 89/253 (35%), Gaps = 29/253 (11%)
Query: 206 GFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDR 265
G H P V + Y+ + ++ ++ V F ++I GSDD
Sbjct: 18 GIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77
Query: 266 LVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPI-SVLR 324
+++++ T + H I +AV V S S+D +++W + +
Sbjct: 78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137
Query: 325 GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD-----------------ARYSQYSPR 367
GH V +AF+P+ + + S D T ++W Y Y P
Sbjct: 138 GHEHFVMCVAFNPKDPSTFA--SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP- 194
Query: 368 IYLPKPPDAITGKXXXXXX----XXXXXXXXLQSHQ--ILCCAYNANGTVFVTGSSDTFA 421
LP P IT L+ H + ++ + ++GS D
Sbjct: 195 --LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 422 RVWSACKSSVEDS 434
++W++ VE +
Sbjct: 253 KIWNSSTYKVEKT 265
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 87/224 (38%), Gaps = 37/224 (16%)
Query: 235 NIKKLRGHR-DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV 293
+IKK +R D V F + +V+T V++W+ ET + S + E +
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 294 SSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGT 353
+ + S+DF IRV+ G + H + +IA P + LS SDD T
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYV---LSGSDDLT 120
Query: 354 CRIWDARYSQYSPRIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYN-ANGTVF 412
++W+ + + + H ++C A+N + + F
Sbjct: 121 VKLWNWENNWALEQTF------------------------EGHEHFVMCVAFNPKDPSTF 156
Query: 413 VTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF 456
+G D +VWS +S+ + +G E VNYV +
Sbjct: 157 ASGCLDRTVKVWSLGQST--------PNFTLTTGQERGVNYVDY 192
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 593 LDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVG 652
+D HP P + ++ Y GR +W+ +R ++ + GKF I++ D
Sbjct: 19 IDFHPTEPWV-LTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77
Query: 653 QIYLLNTGQGESQKD 667
+I + N GE D
Sbjct: 78 RIRVFNYNTGEKVVD 92
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 556 DNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVW 615
D +++ A D I +W+ S V +L GH ++ HP P I +S DG +W
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIW 255
Query: 616 D 616
+
Sbjct: 256 N 256
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 283 GHEGDITDLA-VSSNNTLVASASNDFVIRVWRLPDG-------LPISVLRGHTGAVTAIA 334
GH + D+A N+ ++AS S D + VW +PDG P+ L GHT V +A
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 335 FSPRPSAIYQLLSSSDDGTCRIWDA 359
+ P+A LLS+ D +WD
Sbjct: 139 W--HPTAQNVLLSAGXDNVILVWDV 161
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 551 IVWSLDNRFVLAA-IMDCRICVWNAVDGSLVH-------SLTGHSASSYVLDVHPFNPRI 602
I W N V+A+ DC + VW DG LV +L GH+ ++ HP +
Sbjct: 87 IAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 603 AMSAGYDGRTIVWDIWEGTPI 623
+SAG D +VWD+ G +
Sbjct: 147 LLSAGXDNVILVWDVGTGAAV 167
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 283 GHEGDITDLA-VSSNNTLVASASNDFVIRVWRLPDG-------LPISVLRGHTGAVTAIA 334
GH + D+A N+ ++AS S D + VW +PDG P+ L GHT V +A
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 335 FSPRPSAIYQLLSSSDDGTCRIWDA 359
+ P+A LLS+ D +WD
Sbjct: 139 W--HPTAQNVLLSAGCDNVILVWDV 161
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 551 IVWSLDNRFVLAA-IMDCRICVWNAVDGSLVH-------SLTGHSASSYVLDVHPFNPRI 602
I W N V+A+ DC + VW DG LV +L GH+ ++ HP +
Sbjct: 87 IAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 603 AMSAGYDGRTIVWDIWEGTPI 623
+SAG D +VWD+ G +
Sbjct: 147 LLSAGCDNVILVWDVGTGAAV 167
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 24/155 (15%)
Query: 239 LRGHRDAVYCAIFDRSGRFVI-TGSDDRLVKIWSMET-AFCLASCRGHEGDITDLAVSSN 296
+ H V C F+ F++ TGS D+ V +W + L S H+ +I + S +
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 328
Query: 297 N-TLVASASNDFVIRVWRLP------------DGLP--ISVLRGHTGAVTAIAFSPRPSA 341
N T++AS+ D + VW L DG P + + GHT ++ FS P+
Sbjct: 329 NETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKIS--DFSWNPNE 386
Query: 342 IYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDA 376
+ + S S+D ++W Q + IY + P+
Sbjct: 387 PWVICSVSEDNIMQVW-----QMAENIYNDEDPEG 416
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 548 VNMIVWSLDNRFVLA-AIMDCRICVWNAVDGSL-VHSLTGHSASSYVLDVHPFNPRIAMS 605
VN + ++ + F+LA D + +W+ + L +HS H + + P N I S
Sbjct: 276 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 335
Query: 606 AGYDGRTIVWDI 617
+G D R VWD+
Sbjct: 336 SGTDRRLNVWDL 347
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 19/142 (13%)
Query: 241 GHRDAVYCAIFDRSGRFVI-TGSDDRLVKIWSMET-AFCLASCRGHEGDITDLAVSSNN- 297
H V C F+ F++ TGS D+ V +W + L S H+ +I + S +N
Sbjct: 275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 334
Query: 298 TLVASASNDFVIRVWRLP------------DGLP--ISVLRGHTGAVTAIAFSPRPSAIY 343
T++AS+ D + VW L DG P + + GHT ++ FS P+ +
Sbjct: 335 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS--DFSWNPNEPW 392
Query: 344 QLLSSSDDGTCRIWDARYSQYS 365
+ S S+D ++W + Y+
Sbjct: 393 IICSVSEDNIMQVWQMAENVYN 414
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 548 VNMIVWSLDNRFVLA-AIMDCRICVWNAVDGSL-VHSLTGHSASSYVLDVHPFNPRIAMS 605
VN + ++ + F+LA D + +W+ + L +HS H + + P N I S
Sbjct: 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 339
Query: 606 AGYDGRTIVWDI 617
+G D R VWD+
Sbjct: 340 SGTDRRLHVWDL 351
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 19/142 (13%)
Query: 241 GHRDAVYCAIFDRSGRFVI-TGSDDRLVKIWSMET-AFCLASCRGHEGDITDLAVSSNN- 297
H V C F+ F++ TGS D+ V +W + L S H+ +I + S +N
Sbjct: 277 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 336
Query: 298 TLVASASNDFVIRVWRLP------------DGLP--ISVLRGHTGAVTAIAFSPRPSAIY 343
T++AS+ D + VW L DG P + + GHT ++ FS P+ +
Sbjct: 337 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS--DFSWNPNEPW 394
Query: 344 QLLSSSDDGTCRIWDARYSQYS 365
+ S S+D ++W + Y+
Sbjct: 395 IICSVSEDNIMQVWQMAENVYN 416
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 548 VNMIVWSLDNRFVLA-AIMDCRICVWNAVDGSL-VHSLTGHSASSYVLDVHPFNPRIAMS 605
VN + ++ + F+LA D + +W+ + L +HS H + + P N I S
Sbjct: 282 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 341
Query: 606 AGYDGRTIVWDI 617
+G D R VWD+
Sbjct: 342 SGTDRRLHVWDL 353
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 19/142 (13%)
Query: 241 GHRDAVYCAIFDRSGRFVI-TGSDDRLVKIWSMET-AFCLASCRGHEGDITDLAVSSNN- 297
H V C F+ F++ TGS D+ V +W + L S H+ +I + S +N
Sbjct: 279 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 338
Query: 298 TLVASASNDFVIRVWRLP------------DGLP--ISVLRGHTGAVTAIAFSPRPSAIY 343
T++AS+ D + VW L DG P + + GHT ++ FS P+ +
Sbjct: 339 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS--DFSWNPNEPW 396
Query: 344 QLLSSSDDGTCRIWDARYSQYS 365
+ S S+D ++W + Y+
Sbjct: 397 IICSVSEDNIMQVWQMAENVYN 418
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 548 VNMIVWSLDNRFVLA-AIMDCRICVWNAVDGSL-VHSLTGHSASSYVLDVHPFNPRIAMS 605
VN + ++ + F+LA D + +W+ + L +HS H + + P N I S
Sbjct: 284 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 343
Query: 606 AGYDGRTIVWDI 617
+G D R VWD+
Sbjct: 344 SGTDRRLHVWDL 355
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 28/159 (17%)
Query: 224 AKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVI-TGSDDRLVKIWSMET-AFCLASC 281
+KPS +V H V C F+ F++ TGS D+ V +W + L +
Sbjct: 265 SKPSHLVD---------AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTF 315
Query: 282 RGHEGDITDLAVSSNN-TLVASASNDFVIRVWRLP------------DGLP--ISVLRGH 326
H+ +I + S +N T++AS+ D + VW L DG P + + GH
Sbjct: 316 ESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGH 375
Query: 327 TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS 365
T ++ FS P+ + + S S+D +IW + Y+
Sbjct: 376 TAKIS--DFSWNPNEPWVICSVSEDNIMQIWQMAENIYN 412
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 548 VNMIVWSLDNRFVLA-AIMDCRICVWNAVDGSL-VHSLTGHSASSYVLDVHPFNPRIAMS 605
VN + ++ + F+LA D + +W+ + L +H+ H + + P N I S
Sbjct: 278 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 606 AGYDGRTIVWDI 617
+G D R VWD+
Sbjct: 338 SGTDRRLNVWDL 349
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 3/131 (2%)
Query: 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA-FCLASCRGHEGDI 288
V+ ++ + GH+ V C ++R + +GS + + A + + +GH ++
Sbjct: 163 VESQTKLRTMAGHQARVGCLSWNR--HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEV 220
Query: 289 TDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS 348
LA S+ +AS ND V+++W +P H AV A+A+ P S +
Sbjct: 221 CGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG 280
Query: 349 SDDGTCRIWDA 359
+ D W+A
Sbjct: 281 TMDKQIHFWNA 291
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 255 GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW-- 312
G F+ G + LV I+ +E+ L + GH+ + L S N +++S S I
Sbjct: 146 GSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCL--SWNRHVLSSGSRSGAIHHHDV 203
Query: 313 RLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYS 362
R+ + I L+GH+ V +A+ S QL S +D +IWDAR S
Sbjct: 204 RIANH-QIGTLQGHSSEVCGLAWR---SDGLQLASGGNDNVVQIWDARSS 249
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 28/159 (17%)
Query: 224 AKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVI-TGSDDRLVKIWSMET-AFCLASC 281
+KPS +V H V C F+ F++ TGS D+ V +W + L +
Sbjct: 265 SKPSHLVD---------AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTF 315
Query: 282 RGHEGDITDLAVSSNN-TLVASASNDFVIRVWRLP------------DGLP--ISVLRGH 326
H+ +I + S +N T++AS+ D + VW L DG P + + GH
Sbjct: 316 ESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGH 375
Query: 327 TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS 365
T ++ FS P+ + + S S+D +IW + Y+
Sbjct: 376 TAKIS--DFSWNPNEPWVICSVSEDNIXQIWQXAENIYN 412
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 548 VNMIVWSLDNRFVLA-AIMDCRICVWNAVDGSL-VHSLTGHSASSYVLDVHPFNPRIAMS 605
VN + ++ + F+LA D + +W+ + L +H+ H + + P N I S
Sbjct: 278 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 606 AGYDGRTIVWDI 617
+G D R VWD+
Sbjct: 338 SGTDRRLNVWDL 349
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 255 GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRL 314
G+++ +G+ D ++ I+ + T L + GH I L S ++ L+ +AS+D I+++ +
Sbjct: 176 GKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235
Query: 315 PDGLPISVLRGHTGAVTAIAFSP 337
L GH V +AF P
Sbjct: 236 QHANLAGTLSGHASWVLNVAFCP 258
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 236 IKKLRGHRDAVYCAIFDRSGR----FVITGSDDRLVKIWSM--ETAFCLASCRGHEGDIT 289
K+ + H DA++ + + + V+TGS D LVK+W E S GH+ +
Sbjct: 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVV 84
Query: 290 DLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP 337
+ +S + AS+S D IR+W L +G I + +AFSP
Sbjct: 85 SVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP 132
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 68/140 (48%), Gaps = 8/140 (5%)
Query: 233 MQNIKKLR----GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI 288
++N K+++ G DA + F +++ TG+ V I+ +E+ S I
Sbjct: 109 LENGKQIKSIDAGPVDA-WTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFI 167
Query: 289 TDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS 348
+A S + +AS + D +I ++ + G + L GH + ++ FSP L+++
Sbjct: 168 LSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQL---LVTA 224
Query: 349 SDDGTCRIWDARYSQYSPRI 368
SDDG +I+D +++ + +
Sbjct: 225 SDDGYIKIYDVQHANLAGTL 244
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS 295
+ L GH + F + ++T SDD +KI+ ++ A + GH + ++A
Sbjct: 199 LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP 258
Query: 296 NNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355
++T S+S+D ++VW + + H V + ++ S I +S DD
Sbjct: 259 DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKI---VSVGDDQEIH 315
Query: 356 IWD 358
I+D
Sbjct: 316 IYD 318
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Query: 560 VLAAIMDCRICVWNAVDG--SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617
V+ +D + VW D L SL GH +D+ P IA S+ D +WD+
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLP-IAASSSLDAHIRLWDL 109
Query: 618 WEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665
G I+ + G FSPD + VG++ + G+ +
Sbjct: 110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE 157
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 551 IVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDG 610
I +S D +++ + +D I +++ G L+H+L GH+ L P + ++ ++A DG
Sbjct: 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDG 228
Query: 611 RTIVWDI 617
++D+
Sbjct: 229 YIKIYDV 235
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 6/119 (5%)
Query: 254 SGRFVITGSDDRLVKIWSMETAFCLASCR----GHEGDITDLAVSSNNTLVASASNDFVI 309
S + ++ SD V++W + L + H+ + L+V S+ T S DF +
Sbjct: 104 SEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSV 163
Query: 310 RVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRI 368
+VW L + H+ V +A P I+ LS +DG +WD R + + RI
Sbjct: 164 KVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF--LSCGEDGRILLWDTRKPKPATRI 220
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 566 DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616
D + VW+ +++ S HS+ + P I +S G DGR ++WD
Sbjct: 160 DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 22/169 (13%)
Query: 278 LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG----LPISVLRGHTGAVTAI 333
+A+ GH ++ L + + +AS ND ++ VW G +P+ H GAV A+
Sbjct: 223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 282
Query: 334 AFSPRPSAIYQLLSSSDDGTCRIWDA----------RYSQYSPRIYLPKPPDAITGKXXX 383
A+ P S + + D RIW+ +SQ ++ P + I+G
Sbjct: 283 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA 342
Query: 384 XXXX------XXXXXXXLQSH--QILCCAYNANGTVFVTGSSDTFARVW 424
L+ H ++L + +G + ++D R+W
Sbjct: 343 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA----FCLASCRGHEGDIT 289
++ L GH V + GR + +G +D LV +W L + H+G +
Sbjct: 221 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK 280
Query: 290 DLA---VSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP 337
+A SN ++D IR+W + G +S + H+ V +I +SP
Sbjct: 281 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSP 330
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 23/115 (20%)
Query: 204 GGGFKKHHRAPSVCS-ACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAI-FDRSGRFVITG 261
GG +H R +VCS AC + + V C+I + + +I+G
Sbjct: 296 GGTSDRHIRIWNVCSGACLSAVDAHSQV-----------------CSILWSPHYKELISG 338
Query: 262 ---SDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313
+ ++LV IW T +A +GH + L +S + VASA+ D +R+WR
Sbjct: 339 HGFAQNQLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 22/169 (13%)
Query: 278 LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG----LPISVLRGHTGAVTAI 333
+A+ GH ++ L + + +AS ND ++ VW G +P+ H GAV A+
Sbjct: 234 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 293
Query: 334 AFSPRPSAIYQLLSSSDDGTCRIWDA----------RYSQYSPRIYLPKPPDAITGKXXX 383
A+ P S + + D RIW+ +SQ ++ P + I+G
Sbjct: 294 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA 353
Query: 384 XXXX------XXXXXXXLQSH--QILCCAYNANGTVFVTGSSDTFARVW 424
L+ H ++L + +G + ++D R+W
Sbjct: 354 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA----FCLASCRGHEGDIT 289
++ L GH V + GR + +G +D LV +W L + H+G +
Sbjct: 232 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK 291
Query: 290 DLA---VSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP 337
+A SN ++D IR+W + G +S + H+ V +I +SP
Sbjct: 292 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSP 341
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 23/115 (20%)
Query: 204 GGGFKKHHRAPSVCS-ACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAI-FDRSGRFVITG 261
GG +H R +VCS AC + + V C+I + + +I+G
Sbjct: 307 GGTSDRHIRIWNVCSGACLSAVDAHSQV-----------------CSILWSPHYKELISG 349
Query: 262 ---SDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313
+ ++LV IW T +A +GH + L +S + VASA+ D +R+WR
Sbjct: 350 HGFAQNQLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 282 RGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSA 341
+ H +IT L + + S+S D +++W + DG L GH VT IA R
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR- 191
Query: 342 IYQLLSSSDDGTCRIWD 358
+LS+S DGT R+W+
Sbjct: 192 --NVLSASLDGTIRLWE 206
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%)
Query: 251 FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIR 310
F SG +I+ S D +KIWS++ + GH +TD+A+ V SAS D IR
Sbjct: 144 FFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR 203
Query: 311 VWRLPDGLPI 320
+W G I
Sbjct: 204 LWECGTGTTI 213
Score = 34.7 bits (78), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 560 VLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFN-PRIAMSAGYDGRTIVWDIW 618
++++ D ++ +W+ DGS +L GH A+ V D+ + R +SA DG +W+
Sbjct: 151 LISSSQDMQLKIWSVKDGSNPRTLIGHRAT--VTDIAIIDRGRNVLSASLDGTIRLWECG 208
Query: 619 EGTPIRIY 626
GT I +
Sbjct: 209 TGTTIHTF 216
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 16/134 (11%)
Query: 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSME---TAFCLA-SCRGHEGDIT--DLAVS 294
GH D V+ ++D GR V T S D+ +K++ ++ + + L+ S R H+ I D A
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 295 SNNTLVASASNDFVIRVWRL-PDGLPIS--------VLRGHTGAVTAIAFSPRPSAIYQL 345
++ASAS D +++W PD S L G++ ++ F+P + +L
Sbjct: 69 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KL 127
Query: 346 LSSSDDGTCRIWDA 359
+DG R++DA
Sbjct: 128 ACLGNDGILRLYDA 141
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 282 RGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSA 341
+ H +IT L + + S+S D +++W + DG L GH VT IA R
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR- 194
Query: 342 IYQLLSSSDDGTCRIWD 358
+LS+S DGT R+W+
Sbjct: 195 --NVLSASLDGTIRLWE 209
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%)
Query: 251 FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIR 310
F SG +I+ S D +KIWS++ + GH +TD+A+ V SAS D IR
Sbjct: 147 FFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR 206
Query: 311 VWRLPDGLPI 320
+W G I
Sbjct: 207 LWECGTGTTI 216
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 560 VLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFN-PRIAMSAGYDGRTIVWDIW 618
++++ D ++ +W+ DGS +L GH A+ V D+ + R +SA DG +W+
Sbjct: 154 LISSSQDMQLKIWSVKDGSNPRTLIGHRAT--VTDIAIIDRGRNVLSASLDGTIRLWECG 211
Query: 619 EGTPIRIY 626
GT I +
Sbjct: 212 TGTTIHTF 219
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 16/134 (11%)
Query: 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSME---TAFCLA-SCRGHEGDIT--DLAVS 294
GH D V+ ++D GR V T S D+ +K++ ++ + + L+ S R H+ I D A
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 295 SNNTLVASASNDFVIRVWRL-PDGLPIS--------VLRGHTGAVTAIAFSPRPSAIYQL 345
++ASAS D +++W PD S L G++ ++ F+P + +L
Sbjct: 69 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KL 127
Query: 346 LSSSDDGTCRIWDA 359
+DG R++DA
Sbjct: 128 ACLGNDGILRLYDA 141
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 16/134 (11%)
Query: 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSME---TAFCLA-SCRGHEGDIT--DLAVS 294
GH D V+ ++D GR V T S D+ +K++ ++ + + L+ S R H+ I D A
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 66
Query: 295 SNNTLVASASNDFVIRVWRL-PDGLPIS--------VLRGHTGAVTAIAFSPRPSAIYQL 345
++ASAS D +++W PD S L G++ ++ F+P + +L
Sbjct: 67 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KL 125
Query: 346 LSSSDDGTCRIWDA 359
+DG R++DA
Sbjct: 126 ACLGNDGILRLYDA 139
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 22/169 (13%)
Query: 278 LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG----LPISVLRGHTGAVTAI 333
+A+ GH ++ L + + +AS ND ++ VW G +P+ H GAV A+
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 334 AFSPRPSAIYQLLSSSDDGTCRIWDA----------RYSQYSPRIYLPKPPDAITGKXXX 383
A+ P S + + D RIW+ +SQ ++ P + I+G
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA 262
Query: 384 XXXX------XXXXXXXLQSH--QILCCAYNANGTVFVTGSSDTFARVW 424
L+ H ++L + +G + ++D R+W
Sbjct: 263 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 37.7 bits (86), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA----FCLASCRGHEGDIT 289
++ L GH V + GR + +G +D LV +W L + H+G +
Sbjct: 141 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK 200
Query: 290 DLAVS---SNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPR 338
+A SN ++D IR+W + G +S + H+ V +I +SP
Sbjct: 201 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPH 251
Score = 35.0 bits (79), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 23/115 (20%)
Query: 204 GGGFKKHHRAPSVCS-ACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAI-FDRSGRFVITG 261
GG +H R +VCS AC + + V C+I + + +I+G
Sbjct: 216 GGTSDRHIRIWNVCSGACLSAVDAHSQV-----------------CSILWSPHYKELISG 258
Query: 262 ---SDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313
+ ++LV IW T +A +GH + L +S + VASA+ D +R+WR
Sbjct: 259 HGFAQNQLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 242 HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA--FCLASCRGHEGDITDLAVSS--NN 297
H D ++ A D G + T S DR VKI+ + +A RGHEG + +A +
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG 71
Query: 298 TLVASASNDFVIRVWRLPDGL--PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD 350
++AS S D + +WR +G GH +V ++ ++P + SSD
Sbjct: 72 NILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD 126
>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3K2J|B Chain B, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 130
Score = 42.4 bits (98), Expect = 0.003, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 1647 DYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLR 1705
DY + +P+ + IR +L N Y +L+ + D+N+M NA+ Y + N+A+ +V +L+
Sbjct: 55 DYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQ 113
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 256 RFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP 315
+FVI G + ++ + GH G I+ L + N L+ SAS+D +R+W
Sbjct: 219 KFVIPGPKGAIF-VYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG 277
Query: 316 DGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360
+G + GH+ ++ + ++ +++S S DG+ R+W +
Sbjct: 278 NGNSQNCFYGHSQSIVSASWVGDD----KVISCSMDGSVRLWSLK 318
Score = 38.1 bits (87), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
Query: 238 KLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNN 297
KL GH + F+ + + +++ SDD ++IW GH I + ++
Sbjct: 242 KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD 301
Query: 298 TLVASASNDFVIRVWRLP----------DGLPISVLR-GHTGAVTAIAFSPRPSAIYQL 345
++ S S D +R+W L DG+PI R G A+AF +Y L
Sbjct: 302 KVI-SCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDL 359
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Query: 557 NRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616
N+ +L+A D + +W+ +G+ + GHS S ++ +S DG +W
Sbjct: 259 NKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQS--IVSASWVGDDKVISCSMDGSVRLWS 316
Query: 617 IWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKY 670
+ + T + + + + G+ S DG ++ GQ+ + + + S+ + Y
Sbjct: 317 LKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLY 370
>pdb|4FHL|A Chain A, Nucleoporin Nup37 From Schizosaccharomyces Pombe
pdb|4FHM|A Chain A, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
pdb|4FHN|A Chain A, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|C Chain C, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 394
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 17/119 (14%)
Query: 248 CAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV----SSNNTL---- 299
C D + R +IT ++ ++ T L GH + D+ + S++N L
Sbjct: 107 CVCQDNTVRLIITKNE-------TIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQV 159
Query: 300 VASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
+AS +D + +WRL D PI L G+ + I+ RPS QL+ +G RI+D
Sbjct: 160 IASVGDDCTLIIWRLTDEGPI--LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFD 216
>pdb|4GQ1|A Chain A, Nup37 Of S. Pombe
pdb|4GQ2|P Chain P, S. Pombe Nup120-Nup37 Complex
Length = 393
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 17/119 (14%)
Query: 248 CAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAV----SSNNTL---- 299
C D + R +IT ++ ++ T L GH + D+ + S++N L
Sbjct: 106 CVCQDNTVRLIITKNE-------TIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQV 158
Query: 300 VASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358
+AS +D + +WRL D PI L G+ + I+ RPS QL+ +G RI+D
Sbjct: 159 IASVGDDCTLIIWRLTDEGPI--LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFD 215
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 7/145 (4%)
Query: 233 MQNIKKLRGHRDAVYCAIFD---RSGRFVITGSDDRLVKIWSMETA--FCLASCRGHEGD 287
M++I+ D++ C F G F+I GS V+ W ++ + + + H G
Sbjct: 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGP 88
Query: 288 ITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLS 347
+ D+ S + + V +AS D ++W L I + + H V I + P+ +++
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ-HDAPVKTIHWIKAPN-YSCVMT 146
Query: 348 SSDDGTCRIWDARYSQYSPRIYLPK 372
S D T + WD R S + LP+
Sbjct: 147 GSWDKTLKFWDTRSSNPMMVLQLPE 171
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
Query: 238 KLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNN 297
KL GH + +++ G + + S D +W L + GH G I + V
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT 86
Query: 298 TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLL 346
+ S D+ I++W + +G ++ + V + FSP + +L
Sbjct: 87 KYCVTGSADYSIKLWDVSNGQCVATWKSPV-PVKRVEFSPCGNYFLAIL 134
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR 282
+ + L GH ++ D ++ +TGS D +K+W + C+A+ +
Sbjct: 65 ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK 113
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 37.4 bits (85), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 293 VSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG 352
VS+ + LVA + +++ L G +L+GH + A+++SPR Y L ++S D
Sbjct: 152 VSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD--YILATASADS 209
Query: 353 TCRIWDAR 360
++WD R
Sbjct: 210 RVKLWDVR 217
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 37.0 bits (84), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 299 LVASASNDFVIRVWRLPDG-LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW 357
+VA+ D ++ +W + G +P+S+L+ H + + F PS L + S+DG+ W
Sbjct: 251 VVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHF--HPSNPEHLFTCSEDGSLWHW 308
Query: 358 DA 359
DA
Sbjct: 309 DA 310
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 578 SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT-PIRIYEIGRFKLVDG 636
S + SLTG + +D HP + + G DG +WD+ +GT P+ + + ++ +
Sbjct: 227 SQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEV 286
Query: 637 KFSP 640
F P
Sbjct: 287 HFHP 290
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 27/179 (15%)
Query: 254 SGRFVITGSDDRLVKIWSMETAFC---LASCRGHEGDITDLAVSSNNTLVASASNDFVIR 310
SG S D +++WS+ A +AS + + DL S NN ++A A ++ +
Sbjct: 34 SGTVDANFSTDSSLELWSLLAADSEKPIASLQV-DSKFNDLDWSHNNKIIAGALDNGSLE 92
Query: 311 VWRLPDGL----PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSP 366
++ + ++ H+ +V + F+ + + L S ++G IWD SP
Sbjct: 93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNV--LASGGNNGEIFIWDMNKCTESP 150
Query: 367 RIYLPKPPDAITGKXXXXXXXXXXXXXXLQSHQILCCAYNAN-GTVFVTGSSDTFARVW 424
Y P P G+ +++ A+N + VF + S FA +W
Sbjct: 151 SNYTPLTP----GQSMSSVD------------EVISLAWNQSLAHVFASAGSSNFASIW 193
>pdb|3MQM|A Chain A, Crystal Structure Of The Bromodomain Of Human Ash1l
pdb|3MQM|B Chain B, Crystal Structure Of The Bromodomain Of Human Ash1l
Length = 126
Score = 34.7 bits (78), Expect = 0.42, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 1647 DYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLR 1705
DY + PL I +++ YY+++EA D+ + NAE Y+ + + + V RLR
Sbjct: 47 DYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRLR 105
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 33.5 bits (75), Expect = 1.0, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 1637 QRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESY 1690
Q+L Q DY P+ + I R+ N Y+S+ A DI+++ NA++Y
Sbjct: 34 QKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTY 87
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
pdb|3LJW|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
Length = 120
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 1637 QRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESY 1690
Q+L Q DY P+ + I R+ N Y+S+ A DI+++ NA++Y
Sbjct: 36 QKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTY 89
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human Polybr
Complex With An Acetylated Peptide From Histone 3
Length = 121
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 1637 QRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESY 1690
Q+L Q DY P+ + I R+ N Y+S+ A DI+++ NA++Y
Sbjct: 37 QKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTY 90
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment
3,4-dihydro-3-methyl-2(1h)- Quinazolinon
Length = 145
Score = 33.1 bits (74), Expect = 1.3, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 29/69 (42%)
Query: 1647 DYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRD 1706
DY P+ I+ RL NNYY + + D N M +N Y + E L
Sbjct: 75 DYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEK 134
Query: 1707 WFNRTLNKL 1715
F + +N+L
Sbjct: 135 LFLQKINEL 143
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Quinazoline Ligand
Length = 127
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 29/69 (42%)
Query: 1647 DYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRD 1706
DY P+ I+ RL NNYY + + D N M +N Y + E L
Sbjct: 55 DYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEK 114
Query: 1707 WFNRTLNKL 1715
F + +N+L
Sbjct: 115 LFLQKINEL 123
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4
pdb|3JVK|A Chain A, Crystal Structure Of Bromodomain 1 Of Mouse Brd4 In Complex
With Histone H3-K(Ac)14
pdb|3MUK|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Propionylated
Histone H3- K(Prop)23
pdb|3MUL|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Butyrylated
Histone H3- K(Buty)14
Length = 131
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 29/69 (42%)
Query: 1647 DYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRD 1706
DY P+ I+ RL NNYY + + D N M +N Y + E L
Sbjct: 59 DYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEK 118
Query: 1707 WFNRTLNKL 1715
F + +N+L
Sbjct: 119 LFLQKINEL 127
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain
Containing Protein 4 (Brd4)
pdb|3MXF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With The Inhibitor Jq1
pdb|3P5O|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With Ibet Inhibitor
pdb|2YEL|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|3SVF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Dihydro-Quinazolin Ligand
pdb|3SVG|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3ZYU|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With I-Bet151(Gsk1210151a)
pdb|3ZYU|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With I-Bet151(Gsk1210151a)
pdb|3U5J|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With Alprazolam
pdb|3U5K|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With Midazolam
pdb|3U5K|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With Midazolam
pdb|3U5K|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With Midazolam
pdb|3U5K|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With Midazolam
pdb|3U5L|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Benzo-Triazepine Ligand (Bzt-7)
pdb|4A9L|A Chain A, N-Terminal Bromodomain Of Human Brd4 With 1,3-Dimethyl-6-(
Morpholine-4-Sulfonyl)-1,2,3,4-Tetrahydroquinazolin-2-One
pdb|3UVW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Diacetylated Histone 4 Peptide
(H4k5ack8ac)
pdb|3UVY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Diacetylated Histone 4 Peptide
(H4k16ack20ac)
pdb|3UVX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Diacetylated Histone 4 Peptide
(H4k12ack16ac)
pdb|3UW9|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|4E96|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With The Inhibitor Pfi-1
pdb|4F3I|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With Ms417 Inhibitor
pdb|4GPJ|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Isoxazolylbenzimidazole Ligand
pdb|4HBV|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Quinazolin Ligand
pdb|4HBX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Quinazolin Ligand
pdb|4HBY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Quinazolin Ligand
pdb|4J0R|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A 3,5-dimethylisoxazol Ligand
pdb|4J0S|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A 3,5-dimethylisoxazol Ligand
Length = 127
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 29/69 (42%)
Query: 1647 DYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRD 1706
DY P+ I+ RL NNYY + + D N M +N Y + E L
Sbjct: 55 DYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEK 114
Query: 1707 WFNRTLNKL 1715
F + +N+L
Sbjct: 115 LFLQKINEL 123
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 397 SHQILCCAYNANGTVFVTGSSDTFARVWSACK-----SSVEDSEQPI--HELDVLSGHEN 449
+H +C Y N + V GSS TF +W+ K + + EQP H L + G E
Sbjct: 261 THVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLE- 319
Query: 450 DVNYVQFSGCAVASRSAMS 468
++N+ C + S +A+S
Sbjct: 320 ELNF-----CGIRSLNALS 333
>pdb|1K32|A Chain A, Crystal Structure Of The Tricorn Protease
pdb|1K32|B Chain B, Crystal Structure Of The Tricorn Protease
pdb|1K32|C Chain C, Crystal Structure Of The Tricorn Protease
pdb|1K32|D Chain D, Crystal Structure Of The Tricorn Protease
pdb|1K32|E Chain E, Crystal Structure Of The Tricorn Protease
pdb|1K32|F Chain F, Crystal Structure Of The Tricorn Protease
Length = 1045
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVA 301
V+ DR+G+F + +D + +ET R E ITD +S N+ +A
Sbjct: 381 VFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIA 436
>pdb|1N6D|A Chain A, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|B Chain B, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|C Chain C, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|D Chain D, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|E Chain E, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|F Chain F, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6E|A Chain A, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|C Chain C, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|E Chain E, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|G Chain G, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|I Chain I, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|K Chain K, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6F|A Chain A, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|B Chain B, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|C Chain C, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|D Chain D, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|E Chain E, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|F Chain F, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
Length = 1071
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVA 301
V+ DR+G+F + +D + +ET R E ITD +S N+ +A
Sbjct: 407 VFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIA 462
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 254 SGRFVITGSDDRLVKIWSMETAFCLASC---RGHEGDITDLAVSSNNTLVASASNDFVIR 310
S +F G+D +++W + T+ C+ + G+ V++ N + S S D +
Sbjct: 264 SQKFATVGAD-ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 322
Query: 311 VWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW 357
+ L + + GH +TA+ +P L+S S DG W
Sbjct: 323 FYELGHDEVLKTISGHNKGITALTVNP-------LISGSYDGRIXEW 362
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 579 LVHSLTGHSASSYVLD-VHPFNPRIAMSAGYDGRTIVW 615
L+ +LTGH + +D HP I S YDG+ ++W
Sbjct: 45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 15/131 (11%)
Query: 236 IKKLRGHRDAVYCAIFDRS----GRFVITGSDDRLVKIWSMETAFCLASC---RGHEGDI 288
+K + ++ V IF S +F G+D +++W + T+ C+ + G+
Sbjct: 242 LKYIEDDQEPVQGGIFALSWLDSQKFATVGAD-ATIRVWDVTTSKCVQKWTLDKQQLGNQ 300
Query: 289 TDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS 348
V++ N + S S D + + L + + GH +TA+ +P L+S
Sbjct: 301 QVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP-------LISG 353
Query: 349 SDDGTCRIWDA 359
S DG W +
Sbjct: 354 SYDGRIMEWSS 364
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 221 YAIAKPSTMVQKMQN---IKKLRG-HRDAV-YCAIFDRSGRFVITGSDDRLVKIWSMETA 275
+ A ++ QN IK G H D V + A+ D G F I+ S+D L+K+ T
Sbjct: 158 FLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVD-DGHF-ISCSNDGLIKLVDXHTG 215
Query: 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG 317
L + GHE + + + N +V S D +R+W +G
Sbjct: 216 DVLRTYEGHESFVYCIKLLPNGDIV-SCGEDRTVRIWSKENG 256
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 5/108 (4%)
Query: 255 GRFVITGSDDRLVKIWSME--TAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312
G +I G + + IW + T A LA+S ++ + S +D I VW
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 168
Query: 313 RLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360
L + + +GHT + I S + +L + D T R WD R
Sbjct: 169 DLHNQTLVRQFQGHTDGASCIDISNDGT---KLWTGGLDNTVRSWDLR 213
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 579 LVHSLTGHSASSYVLD-VHPFNPRIAMSAGYDGRTIVW 615
L+ +LTGH + +D HP I S YDG+ ++W
Sbjct: 47 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 84
>pdb|1XAS|A Chain A, Crystal Structure, At 2.6 Angstroms Resolution, Of The
Streptomyces Lividans Xylanase A, A Member Of The F
Family Of Beta-1,4-D-Glycanses
Length = 299
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 1045 VFADGSQDEKYDSQLEESAGDMENKTRWAEVKIRTSKRSSSSGVLLPPDANFD 1097
FADGS + DS L+ S D W EV RT++ + S L D N +
Sbjct: 129 AFADGSSGARRDSNLQRSGND------WIEVAFRTARAADPSAKLCYNDYNVE 175
>pdb|1E0V|A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme
Intermediate At 1.7 A
Length = 313
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 1045 VFADGSQDEKYDSQLEESAGDMENKTRWAEVKIRTSKRSSSSGVLLPPDANFD 1097
FADGS + DS L+ S D W EV RT++ + S L D N +
Sbjct: 129 AFADGSSGARRDSNLQRSGND------WIEVAFRTARAADPSAKLCYNDYNVE 175
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide.
pdb|2WP2|B Chain B, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide
Length = 120
Score = 31.6 bits (70), Expect = 4.1, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 27/69 (39%)
Query: 1647 DYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRD 1706
DY P+ I+ RL N YY +D N M SN Y + + L
Sbjct: 48 DYYTIIKTPMDLNTIKKRLENKYYEKASECIEDFNTMFSNCYLYNKTGDDIVVMAQALEK 107
Query: 1707 WFNRTLNKL 1715
F + L+++
Sbjct: 108 LFMQKLSQM 116
>pdb|1E0W|A Chain A, Xylanase 10a From Sreptomyces Lividans. Native Structure At
1.2 Angstrom Resolution
pdb|1E0X|A Chain A, Xylanase 10a From Sreptomyces Lividans. Xylobiosyl-Enzyme
Intermediate At 1.65 A
pdb|1E0X|B Chain B, Xylanase 10a From Sreptomyces Lividans. Xylobiosyl-Enzyme
Intermediate At 1.65 A
pdb|1OD8|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-Isofagomine Lactam
pdb|1V0K|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-Deoxynojirimycin At Ph 5.8
pdb|1V0L|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-isofagomine At Ph 5.8
pdb|1V0M|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-deoxynojirimycin At Ph 7.5
pdb|1V0N|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-Isofagomine At Ph 7.5
Length = 313
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 1045 VFADGSQDEKYDSQLEESAGDMENKTRWAEVKIRTSKRSSSSGVLLPPDANFD 1097
FADGS + DS L+ S D W EV RT++ + S L D N +
Sbjct: 129 AFADGSSGARRDSNLQRSGND------WIEVAFRTARAADPSAKLCYNDYNVE 175
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 579 LVHSLTGHSASSYVLD-VHPFNPRIAMSAGYDGRTIVW 615
L+ +LTGH + +D HP I S YDG+ ++W
Sbjct: 45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 31.2 bits (69), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 579 LVHSLTGHSASSYVLD-VHPFNPRIAMSAGYDGRTIVW 615
L+ +LTGH + +D HP I S YDG+ ++W
Sbjct: 45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82
>pdb|2V95|A Chain A, Struture Of Corticosteroid-Binding Globulin In Complex With
Cortisol
Length = 371
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 959 ELLESQSD-TGNRKRLVLKLSLRDHKKALSLEDTRVKGDDMAKLPQSSSGPPQGTTERKI 1017
+LL +QSD +GN K + L L++ HK L L++ V LP S++G P +
Sbjct: 290 DLLTNQSDFSGNTKDVPLTLTMV-HKAMLQLDEGNV-------LPNSTNGAPLHLRSEPL 341
Query: 1018 DLSLKEP 1024
D+ +P
Sbjct: 342 DIKFNKP 348
>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l)
Length = 155
Score = 31.2 bits (69), Expect = 5.4, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 1647 DYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESY 1690
DY P+ E IR + + Y+S E+ DD+N++L+N+ Y
Sbjct: 59 DYYKMIVNPVDLETIRKNISKHKYQSRESFLDDVNLILANSVKY 102
>pdb|4EX4|A Chain A, The Structure Of Glcb From Mycobacterium Leprae
pdb|4EX4|B Chain B, The Structure Of Glcb From Mycobacterium Leprae
Length = 735
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 1255 SEVPEEAEGYGRSSSDQLLNSNLKF--KVRDGSKSSYKTRTDIEAFDGGMEDGINHEASG 1312
+E E+ Y + D+++ KF + + S+ T + FDG ++ I ++G
Sbjct: 155 TEGAEKGSEYNKIRGDKVIAYARKFMDQAVPLASDSWTNATGVSIFDGQLQIAIGTNSTG 214
Query: 1313 IDSPEAASGSIRKTRSMKMKII 1334
+ SPE G R+ RS ++
Sbjct: 215 LASPEKFVGYNRQLRSSNWSVL 236
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
pdb|3UV4|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 158
Score = 30.8 bits (68), Expect = 6.6, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 1647 DYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESY 1690
DY P+ E IR + + Y+S E+ DD+N++L+N+ Y
Sbjct: 62 DYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKY 105
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 30.4 bits (67), Expect = 7.9, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 1647 DYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESY 1690
DY P+ E IR + + Y+S E+ DD+N++L+N+ Y
Sbjct: 181 DYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKY 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,683,018
Number of Sequences: 62578
Number of extensions: 2062805
Number of successful extensions: 5682
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 4486
Number of HSP's gapped (non-prelim): 750
length of query: 1715
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1603
effective length of database: 7,964,601
effective search space: 12767255403
effective search space used: 12767255403
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)