Query 048801
Match_columns 1715
No_of_seqs 1295 out of 4962
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 13:26:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0644 Uncharacterized conser 100.0 6E-142 1E-146 1271.6 47.8 1094 47-1715 13-1113(1113)
2 KOG0271 Notchless-like WD40 re 100.0 7.4E-47 1.6E-51 425.3 31.9 360 234-658 106-479 (480)
3 KOG0271 Notchless-like WD40 re 100.0 8.3E-40 1.8E-44 368.6 30.0 323 276-691 106-476 (480)
4 KOG0319 WD40-repeat-containing 100.0 4.4E-37 9.6E-42 370.5 32.8 387 226-666 87-583 (775)
5 KOG0272 U4/U6 small nuclear ri 100.0 8.8E-38 1.9E-42 357.4 25.1 285 239-616 171-458 (459)
6 KOG0272 U4/U6 small nuclear ri 100.0 2.9E-37 6.3E-42 353.2 24.5 287 282-658 172-458 (459)
7 KOG0286 G-protein beta subunit 100.0 5.2E-35 1.1E-39 321.8 32.9 292 233-616 45-343 (343)
8 KOG0291 WD40-repeat-containing 100.0 7.5E-34 1.6E-38 341.9 45.1 518 192-783 96-738 (893)
9 KOG0319 WD40-repeat-containing 100.0 2E-34 4.4E-39 347.6 31.4 388 187-663 100-622 (775)
10 KOG0273 Beta-transducin family 100.0 5.2E-33 1.1E-37 321.5 32.8 327 237-660 173-523 (524)
11 KOG0318 WD40 repeat stress pro 100.0 8.7E-32 1.9E-36 314.4 41.6 387 232-664 136-564 (603)
12 KOG0279 G protein beta subunit 100.0 2.2E-32 4.8E-37 300.0 34.4 295 232-660 4-313 (315)
13 KOG0318 WD40 repeat stress pro 100.0 2.3E-31 4.9E-36 310.9 40.0 441 231-788 47-591 (603)
14 KOG0286 G-protein beta subunit 100.0 1E-31 2.2E-36 295.9 34.4 294 278-658 48-343 (343)
15 KOG0291 WD40-repeat-containing 100.0 4.2E-31 9.1E-36 318.3 41.7 376 243-688 96-543 (893)
16 KOG0315 G-protein beta subunit 100.0 1.5E-31 3.3E-36 288.7 32.4 295 256-638 11-308 (311)
17 KOG0296 Angio-associated migra 100.0 2.7E-31 5.9E-36 300.1 34.2 339 235-660 56-398 (399)
18 KOG0295 WD40 repeat-containing 100.0 4.1E-32 8.9E-37 306.3 25.8 308 232-659 97-405 (406)
19 KOG0265 U5 snRNP-specific prot 100.0 8E-31 1.7E-35 290.1 28.3 293 235-616 39-336 (338)
20 KOG0306 WD40-repeat-containing 100.0 3.8E-30 8.3E-35 310.0 35.3 412 224-686 88-654 (888)
21 cd00200 WD40 WD40 domain, foun 100.0 8.6E-30 1.9E-34 290.8 36.7 288 236-616 2-289 (289)
22 cd00200 WD40 WD40 domain, foun 100.0 3.1E-29 6.7E-34 286.2 37.0 288 278-658 2-289 (289)
23 KOG0263 Transcription initiati 100.0 1.5E-30 3.3E-35 318.4 26.4 281 235-619 370-650 (707)
24 KOG0273 Beta-transducin family 100.0 5.5E-30 1.2E-34 296.6 29.1 310 279-683 173-510 (524)
25 KOG0285 Pleiotropic regulator 100.0 3.3E-30 7.1E-35 289.2 25.5 291 276-661 142-440 (460)
26 KOG0306 WD40-repeat-containing 100.0 3.3E-29 7.1E-34 302.0 33.9 404 187-662 102-666 (888)
27 KOG0284 Polyadenylation factor 100.0 8.4E-31 1.8E-35 298.9 19.2 285 284-660 95-380 (464)
28 KOG0645 WD40 repeat protein [G 100.0 5.5E-29 1.2E-33 272.3 32.1 294 233-618 4-311 (312)
29 KOG0315 G-protein beta subunit 100.0 3.3E-29 7.1E-34 270.7 29.4 295 216-596 13-309 (311)
30 KOG0282 mRNA splicing factor [ 100.0 1.6E-30 3.4E-35 302.6 20.4 296 233-616 204-503 (503)
31 KOG0285 Pleiotropic regulator 100.0 1.5E-29 3.2E-34 284.0 26.0 292 232-618 140-439 (460)
32 KOG0281 Beta-TrCP (transducin 100.0 9.3E-31 2E-35 291.7 15.9 278 242-623 196-482 (499)
33 KOG0266 WD40 repeat-containing 100.0 5.2E-29 1.1E-33 312.5 33.1 292 236-618 151-454 (456)
34 KOG0284 Polyadenylation factor 100.0 2.5E-30 5.4E-35 295.1 18.5 282 242-617 95-379 (464)
35 KOG0279 G protein beta subunit 100.0 1.7E-28 3.7E-33 269.6 31.9 299 189-575 12-313 (315)
36 KOG0276 Vesicle coat complex C 100.0 9.4E-29 2E-33 292.7 31.8 288 236-613 6-294 (794)
37 KOG0296 Angio-associated migra 100.0 1.4E-28 2.9E-33 278.3 31.0 337 190-618 62-398 (399)
38 KOG0263 Transcription initiati 100.0 1.1E-29 2.4E-34 310.9 23.9 278 280-661 373-650 (707)
39 KOG0293 WD40 repeat-containing 100.0 2.3E-29 5.1E-34 286.5 24.8 294 233-619 214-514 (519)
40 KOG0281 Beta-TrCP (transducin 100.0 4.6E-30 1E-34 286.2 16.2 276 284-663 196-480 (499)
41 KOG0316 Conserved WD40 repeat- 100.0 1.8E-28 3.8E-33 263.0 27.3 287 234-657 8-296 (307)
42 PLN00181 protein SPA1-RELATED; 100.0 1.5E-27 3.2E-32 319.5 40.6 290 239-617 479-792 (793)
43 KOG0292 Vesicle coat complex C 100.0 1.1E-27 2.3E-32 291.6 34.2 298 238-618 4-321 (1202)
44 PLN00181 protein SPA1-RELATED; 100.0 3.1E-27 6.7E-32 316.4 41.5 303 264-659 457-792 (793)
45 KOG0282 mRNA splicing factor [ 100.0 2.7E-29 6E-34 292.3 18.1 291 275-658 204-503 (503)
46 KOG0293 WD40 repeat-containing 100.0 3E-28 6.6E-33 277.5 24.4 293 276-661 215-514 (519)
47 KOG0292 Vesicle coat complex C 100.0 3.4E-27 7.5E-32 287.2 33.8 343 209-617 17-396 (1202)
48 KOG0276 Vesicle coat complex C 100.0 1.7E-26 3.8E-31 273.6 38.0 281 191-571 12-295 (794)
49 KOG0266 WD40 repeat-containing 100.0 2.1E-27 4.6E-32 297.9 32.5 291 278-659 151-453 (456)
50 KOG1408 WD40 repeat protein [F 100.0 6.8E-26 1.5E-30 270.2 38.2 435 233-691 68-708 (1080)
51 KOG0645 WD40 repeat protein [G 100.0 1.9E-26 4E-31 252.6 30.7 294 276-660 5-311 (312)
52 KOG0265 U5 snRNP-specific prot 100.0 1.2E-26 2.6E-31 257.1 27.8 287 277-657 39-335 (338)
53 KOG0295 WD40 repeat-containing 100.0 2E-27 4.4E-32 268.6 21.1 276 222-617 129-405 (406)
54 KOG0275 Conserved WD40 repeat- 100.0 1.5E-27 3.3E-32 263.6 18.2 288 241-616 211-507 (508)
55 KOG0313 Microtubule binding pr 99.9 5E-26 1.1E-30 258.5 28.9 295 283-659 103-417 (423)
56 KOG0278 Serine/threonine kinas 99.9 5.6E-27 1.2E-31 253.1 19.6 291 278-664 7-301 (334)
57 KOG0274 Cdc4 and related F-box 99.9 1.3E-25 2.7E-30 282.2 31.4 288 237-627 201-491 (537)
58 KOG1787 Kinase A-anchor protei 99.9 2.2E-27 4.7E-32 307.9 13.4 142 12-159 590-758 (1126)
59 KOG0643 Translation initiation 99.9 2.4E-25 5.2E-30 243.1 26.8 294 238-618 5-317 (327)
60 KOG0643 Translation initiation 99.9 7.7E-26 1.7E-30 246.9 22.3 296 280-661 5-318 (327)
61 KOG0313 Microtubule binding pr 99.9 1.9E-25 4E-30 253.9 25.9 305 241-617 103-417 (423)
62 KOG0278 Serine/threonine kinas 99.9 6E-26 1.3E-30 245.2 20.1 291 236-622 7-301 (334)
63 KOG1539 WD repeat protein [Gen 99.9 9.5E-25 2.1E-29 266.8 32.9 408 225-687 184-638 (910)
64 KOG0772 Uncharacterized conser 99.9 3.5E-25 7.5E-30 258.3 26.1 301 235-616 159-485 (641)
65 KOG1446 Histone H3 (Lys4) meth 99.9 5.7E-24 1.2E-28 238.8 34.2 298 232-618 3-303 (311)
66 KOG0288 WD40 repeat protein Ti 99.9 4.9E-26 1.1E-30 260.7 17.2 287 236-615 168-458 (459)
67 KOG0283 WD40 repeat-containing 99.9 2.1E-25 4.5E-30 275.9 24.1 264 231-577 254-578 (712)
68 KOG1408 WD40 repeat protein [F 99.9 3.7E-24 8E-29 255.6 31.2 381 246-662 263-715 (1080)
69 KOG1407 WD40 repeat protein [F 99.9 2.9E-24 6.4E-29 234.2 27.3 287 279-660 14-311 (313)
70 KOG0300 WD40 repeat-containing 99.9 9.7E-25 2.1E-29 241.3 21.9 297 232-620 137-478 (481)
71 KOG1407 WD40 repeat protein [F 99.9 9.6E-24 2.1E-28 230.2 27.2 277 237-609 14-293 (313)
72 KOG2106 Uncharacterized conser 99.9 6.8E-23 1.5E-27 238.8 36.0 386 235-688 96-513 (626)
73 KOG0973 Histone transcription 99.9 4.7E-24 1E-28 269.3 28.5 295 241-663 11-358 (942)
74 KOG0274 Cdc4 and related F-box 99.9 7.3E-24 1.6E-28 266.3 29.0 281 284-668 207-490 (537)
75 KOG0308 Conserved WD40 repeat- 99.9 1.6E-24 3.4E-29 259.0 21.0 332 248-665 29-398 (735)
76 KOG0275 Conserved WD40 repeat- 99.9 1.8E-24 3.8E-29 239.5 19.8 285 283-658 211-507 (508)
77 KOG0277 Peroxisomal targeting 99.9 4.2E-24 9.1E-29 232.1 22.2 282 289-659 12-308 (311)
78 KOG0640 mRNA cleavage stimulat 99.9 4.9E-24 1.1E-28 235.9 22.8 295 278-658 105-424 (430)
79 KOG0299 U3 snoRNP-associated p 99.9 1.9E-23 4.1E-28 242.8 27.1 298 236-616 135-454 (479)
80 PTZ00421 coronin; Provisional 99.9 1.6E-22 3.5E-27 253.9 37.1 266 242-597 19-313 (493)
81 KOG1063 RNA polymerase II elon 99.9 7.7E-23 1.7E-27 246.3 32.1 375 231-662 179-650 (764)
82 KOG0277 Peroxisomal targeting 99.9 8.3E-24 1.8E-28 229.8 21.5 282 247-617 12-308 (311)
83 KOG1539 WD repeat protein [Gen 99.9 2.4E-22 5.3E-27 246.0 36.7 419 245-745 161-635 (910)
84 KOG0316 Conserved WD40 repeat- 99.9 2.3E-23 5E-28 223.9 24.4 252 319-665 9-262 (307)
85 KOG0647 mRNA export protein (c 99.9 3.1E-23 6.6E-28 230.3 25.9 273 241-648 25-311 (347)
86 KOG0283 WD40 repeat-containing 99.9 1.7E-23 3.8E-28 259.0 26.5 309 276-662 257-578 (712)
87 KOG0305 Anaphase promoting com 99.9 5.8E-23 1.3E-27 249.7 30.0 276 249-620 183-463 (484)
88 KOG0301 Phospholipase A2-activ 99.9 6E-23 1.3E-27 247.5 28.0 282 232-618 3-288 (745)
89 KOG0640 mRNA cleavage stimulat 99.9 2.1E-23 4.4E-28 231.0 21.3 296 236-617 105-425 (430)
90 KOG0289 mRNA splicing factor [ 99.9 8.8E-23 1.9E-27 235.0 26.9 284 244-617 220-505 (506)
91 cd06071 Beach BEACH (Beige and 99.9 2.8E-25 6.1E-30 255.2 6.1 130 14-151 121-275 (275)
92 KOG0294 WD40 repeat-containing 99.9 1.1E-22 2.4E-27 227.0 26.3 249 232-620 32-283 (362)
93 KOG0268 Sof1-like rRNA process 99.9 6.3E-24 1.4E-28 239.9 16.1 287 277-662 58-347 (433)
94 KOG0310 Conserved WD40 repeat- 99.9 1.4E-22 3E-27 237.4 27.2 282 285-662 26-311 (487)
95 KOG1446 Histone H3 (Lys4) meth 99.9 1.7E-21 3.8E-26 218.9 34.8 291 276-661 5-304 (311)
96 PTZ00420 coronin; Provisional 99.9 7E-22 1.5E-26 249.2 34.9 251 261-642 50-318 (568)
97 KOG0973 Histone transcription 99.9 2.3E-22 5E-27 254.2 28.7 318 191-578 12-358 (942)
98 KOG0772 Uncharacterized conser 99.9 2.1E-22 4.5E-27 235.3 24.1 310 275-658 157-485 (641)
99 KOG0268 Sof1-like rRNA process 99.9 3.5E-23 7.7E-28 233.9 17.0 290 235-623 58-350 (433)
100 KOG1063 RNA polymerase II elon 99.9 1.5E-21 3.2E-26 235.3 31.8 400 234-688 45-640 (764)
101 PF02138 Beach: Beige/BEACH do 99.9 7.2E-25 1.6E-29 252.4 2.8 128 14-151 120-270 (270)
102 KOG0300 WD40 repeat-containing 99.9 2.4E-22 5.2E-27 222.5 22.4 330 257-662 126-478 (481)
103 KOG0288 WD40 repeat protein Ti 99.9 4.9E-23 1.1E-27 236.3 17.4 285 276-657 166-458 (459)
104 KOG2048 WD40 repeat protein [G 99.9 2.3E-20 5E-25 225.4 40.8 331 242-661 24-412 (691)
105 KOG0310 Conserved WD40 repeat- 99.9 3.5E-22 7.7E-27 233.9 24.5 281 242-617 25-308 (487)
106 KOG0301 Phospholipase A2-activ 99.9 1.3E-21 2.8E-26 236.1 29.4 283 276-662 5-290 (745)
107 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 9.2E-21 2E-25 222.6 36.3 295 255-640 1-300 (300)
108 KOG0641 WD40 repeat protein [G 99.9 4.6E-21 9.9E-26 204.3 30.1 301 193-575 33-349 (350)
109 KOG0305 Anaphase promoting com 99.9 1.1E-21 2.5E-26 238.5 29.0 278 290-662 182-463 (484)
110 KOG2096 WD40 repeat protein [G 99.9 1.1E-21 2.5E-26 218.2 25.5 304 236-616 79-400 (420)
111 KOG0641 WD40 repeat protein [G 99.9 2.5E-20 5.4E-25 198.7 33.7 299 278-660 26-349 (350)
112 KOG2106 Uncharacterized conser 99.9 4.7E-20 1E-24 215.4 36.9 431 179-686 131-616 (626)
113 PTZ00421 coronin; Provisional 99.9 5.9E-21 1.3E-25 239.8 32.0 267 328-665 21-295 (493)
114 KOG1036 Mitotic spindle checkp 99.9 5.6E-21 1.2E-25 213.7 27.2 270 284-650 12-294 (323)
115 KOG0299 U3 snoRNP-associated p 99.9 4.7E-21 1E-25 223.0 27.2 275 278-648 135-443 (479)
116 KOG1332 Vesicle coat complex C 99.9 1.3E-21 2.9E-26 211.8 20.3 259 239-575 7-286 (299)
117 KOG0646 WD40 repeat protein [G 99.9 2.9E-21 6.3E-26 225.2 23.3 298 260-641 12-330 (476)
118 KOG0308 Conserved WD40 repeat- 99.9 1.5E-21 3.2E-26 233.8 21.3 282 295-660 35-327 (735)
119 KOG2048 WD40 repeat protein [G 99.9 2.8E-19 6.1E-24 216.1 39.7 405 193-691 26-544 (691)
120 KOG0289 mRNA splicing factor [ 99.9 1.7E-20 3.6E-25 216.4 27.7 281 286-659 220-505 (506)
121 KOG0264 Nucleosome remodeling 99.9 1.1E-20 2.4E-25 220.5 24.2 265 239-618 120-404 (422)
122 KOG0264 Nucleosome remodeling 99.9 1.5E-20 3.3E-25 219.5 24.8 266 325-661 122-405 (422)
123 PTZ00420 coronin; Provisional 99.9 6E-20 1.3E-24 231.9 31.7 219 232-506 63-295 (568)
124 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.6E-19 5.7E-24 210.2 34.6 276 297-668 1-287 (300)
125 KOG1036 Mitotic spindle checkp 99.9 5.2E-20 1.1E-24 206.0 26.7 282 242-607 12-293 (323)
126 KOG0646 WD40 repeat protein [G 99.9 5.9E-21 1.3E-25 222.7 19.2 245 242-603 80-335 (476)
127 KOG0639 Transducin-like enhanc 99.9 6.6E-21 1.4E-25 221.5 19.4 290 190-574 408-703 (705)
128 PF06507 Auxin_resp: Auxin res 99.9 5.9E-22 1.3E-26 186.4 7.9 78 1502-1580 5-83 (83)
129 KOG1273 WD40 repeat protein [G 99.9 1.2E-19 2.6E-24 202.2 25.7 291 246-617 26-321 (405)
130 KOG1445 Tumor-specific antigen 99.9 3E-19 6.5E-24 211.5 30.3 142 544-685 626-783 (1012)
131 KOG4283 Transcription-coupled 99.8 1.2E-19 2.6E-24 200.4 23.5 299 282-659 40-364 (397)
132 KOG2096 WD40 repeat protein [G 99.8 3.1E-19 6.7E-24 199.0 26.7 308 279-662 80-404 (420)
133 KOG0321 WD40 repeat-containing 99.8 1.1E-19 2.4E-24 217.5 24.6 313 249-620 55-393 (720)
134 KOG0294 WD40 repeat-containing 99.8 4.7E-19 1E-23 198.2 27.2 264 300-662 4-283 (362)
135 KOG0639 Transducin-like enhanc 99.8 9.7E-20 2.1E-24 211.8 22.5 282 283-659 417-703 (705)
136 KOG2445 Nuclear pore complex c 99.8 4.8E-19 1E-23 197.5 27.0 286 240-575 10-318 (361)
137 KOG1274 WD40 repeat protein [G 99.8 5.9E-19 1.3E-23 219.0 30.5 284 282-656 10-296 (933)
138 KOG0269 WD40 repeat-containing 99.8 5.6E-20 1.2E-24 224.1 20.3 285 246-620 42-342 (839)
139 KOG4283 Transcription-coupled 99.8 4.9E-19 1.1E-23 195.6 25.7 302 239-617 39-364 (397)
140 KOG4328 WD40 protein [Function 99.8 3.6E-19 7.8E-24 207.0 25.8 307 270-661 171-496 (498)
141 KOG1538 Uncharacterized conser 99.8 2.2E-18 4.8E-23 205.1 31.6 396 245-712 14-541 (1081)
142 KOG0650 WD40 repeat nucleolar 99.8 6.5E-19 1.4E-23 209.3 26.6 287 234-615 391-732 (733)
143 KOG0650 WD40 repeat nucleolar 99.8 4.9E-19 1.1E-23 210.4 24.5 312 277-657 392-732 (733)
144 KOG0267 Microtubule severing p 99.8 1.2E-20 2.6E-25 228.2 10.5 256 298-652 5-260 (825)
145 KOG0647 mRNA export protein (c 99.8 1.1E-18 2.4E-23 194.3 25.0 282 189-564 24-312 (347)
146 KOG2055 WD40 repeat protein [G 99.8 8.2E-19 1.8E-23 204.1 24.5 288 284-660 212-512 (514)
147 KOG2055 WD40 repeat protein [G 99.8 1.2E-18 2.7E-23 202.6 25.9 287 243-618 213-512 (514)
148 KOG0644 Uncharacterized conser 99.8 3.5E-20 7.6E-25 225.7 13.4 274 276-689 181-462 (1113)
149 KOG0267 Microtubule severing p 99.8 2.2E-20 4.7E-25 226.0 10.8 239 237-567 22-260 (825)
150 KOG1332 Vesicle coat complex C 99.8 2.6E-19 5.7E-24 194.2 18.0 255 324-660 8-286 (299)
151 COG2319 FOG: WD40 repeat [Gene 99.8 2.7E-16 5.9E-21 188.1 45.8 333 238-665 60-405 (466)
152 COG2319 FOG: WD40 repeat [Gene 99.8 2.3E-16 5E-21 188.8 44.7 336 235-661 100-443 (466)
153 KOG1274 WD40 repeat protein [G 99.8 4E-18 8.7E-23 211.8 29.5 274 240-602 10-285 (933)
154 KOG1273 WD40 repeat protein [G 99.8 1.7E-18 3.6E-23 193.2 21.2 294 288-682 26-338 (405)
155 KOG4328 WD40 protein [Function 99.8 1.4E-17 3.1E-22 193.9 25.6 308 231-618 174-495 (498)
156 KOG0269 WD40 repeat-containing 99.8 1.1E-18 2.3E-23 213.2 16.3 244 246-576 90-341 (839)
157 KOG2445 Nuclear pore complex c 99.8 2.3E-17 5.1E-22 184.2 25.4 272 324-660 10-318 (361)
158 KOG1009 Chromatin assembly com 99.8 1.3E-17 2.9E-22 192.1 24.1 308 243-663 13-375 (434)
159 KOG1272 WD40-repeat-containing 99.8 2.2E-19 4.7E-24 208.7 9.7 313 329-777 131-457 (545)
160 KOG0270 WD40 repeat-containing 99.8 1.2E-17 2.5E-22 194.4 20.5 240 254-580 191-454 (463)
161 KOG1445 Tumor-specific antigen 99.8 2E-16 4.3E-21 187.9 30.8 182 484-688 638-835 (1012)
162 KOG0307 Vesicle coat complex C 99.8 4.1E-18 8.9E-23 216.6 17.8 286 248-621 11-330 (1049)
163 KOG0321 WD40 repeat-containing 99.8 4.2E-17 9.1E-22 195.8 25.0 301 291-663 55-394 (720)
164 KOG0302 Ribosome Assembly prot 99.8 2.5E-17 5.4E-22 187.8 21.3 266 323-657 147-435 (440)
165 KOG0322 G-protein beta subunit 99.8 1.4E-17 3E-22 182.6 17.9 311 235-617 6-322 (323)
166 KOG0302 Ribosome Assembly prot 99.8 4.2E-17 9.1E-22 186.0 21.9 252 281-616 147-436 (440)
167 KOG1963 WD40 repeat protein [G 99.8 8.4E-16 1.8E-20 191.7 34.2 361 228-662 42-540 (792)
168 KOG4378 Nuclear protein COP1 [ 99.7 2.1E-16 4.5E-21 184.4 24.6 284 265-642 12-305 (673)
169 KOG4227 WD40 repeat protein [G 99.7 1.4E-16 3.1E-21 180.8 22.6 302 236-617 49-386 (609)
170 KOG1034 Transcriptional repres 99.7 2.3E-16 4.9E-21 177.6 23.6 310 239-617 34-382 (385)
171 KOG0307 Vesicle coat complex C 99.7 3E-17 6.4E-22 208.9 17.1 294 290-662 11-329 (1049)
172 KOG2919 Guanine nucleotide-bin 99.7 2.9E-16 6.2E-21 176.2 22.8 284 289-650 53-360 (406)
173 KOG4378 Nuclear protein COP1 [ 99.7 1.6E-16 3.4E-21 185.4 20.7 262 245-600 36-305 (673)
174 KOG0270 WD40 repeat-containing 99.7 5.5E-16 1.2E-20 180.6 24.6 305 290-665 130-454 (463)
175 KOG1007 WD repeat protein TSSC 99.7 6.7E-16 1.5E-20 171.0 22.8 270 263-618 38-361 (370)
176 KOG1034 Transcriptional repres 99.7 7.4E-16 1.6E-20 173.5 19.8 281 241-575 87-383 (385)
177 KOG0642 Cell-cycle nuclear pro 99.7 3.3E-16 7.2E-21 186.8 17.4 271 233-630 284-573 (577)
178 KOG1310 WD40 repeat protein [G 99.7 1.2E-15 2.5E-20 180.0 21.4 181 230-427 37-231 (758)
179 KOG2919 Guanine nucleotide-bin 99.7 5.8E-15 1.3E-19 165.8 25.9 275 248-608 54-360 (406)
180 KOG1538 Uncharacterized conser 99.7 1.8E-15 4E-20 180.6 23.1 277 287-662 14-295 (1081)
181 KOG1188 WD40 repeat protein [G 99.7 1.5E-15 3.3E-20 172.2 21.1 281 298-659 41-345 (376)
182 KOG1009 Chromatin assembly com 99.7 4.6E-15 1E-19 171.3 24.6 292 232-622 54-376 (434)
183 KOG1587 Cytoplasmic dynein int 99.7 8.9E-15 1.9E-19 183.4 27.6 285 307-662 222-518 (555)
184 KOG1188 WD40 repeat protein [G 99.7 1.8E-15 4E-20 171.5 19.0 287 256-617 41-345 (376)
185 KOG0322 G-protein beta subunit 99.7 1.5E-15 3.2E-20 166.8 17.7 304 277-659 6-322 (323)
186 KOG1007 WD repeat protein TSSC 99.7 4.9E-15 1.1E-19 164.2 20.5 279 237-575 57-361 (370)
187 KOG1963 WD40 repeat protein [G 99.7 1.3E-13 2.8E-18 172.4 35.6 280 239-581 12-328 (792)
188 KOG4227 WD40 repeat protein [G 99.7 1.1E-14 2.3E-19 165.8 23.6 302 277-659 48-386 (609)
189 KOG1334 WD40 repeat protein [G 99.6 1.7E-15 3.8E-20 177.6 15.7 329 227-619 126-467 (559)
190 KOG1517 Guanine nucleotide bin 99.6 3.7E-14 8.1E-19 177.5 24.6 288 245-620 1066-1383(1387)
191 KOG1587 Cytoplasmic dynein int 99.6 1E-13 2.2E-18 174.0 28.0 285 264-619 221-517 (555)
192 KOG1240 Protein kinase contain 99.6 8E-14 1.7E-18 177.4 26.7 321 231-616 1036-1431(1431)
193 KOG4497 Uncharacterized conser 99.6 8.4E-14 1.8E-18 156.6 23.6 365 249-653 14-425 (447)
194 KOG1517 Guanine nucleotide bin 99.6 8.3E-14 1.8E-18 174.5 25.4 301 287-663 1066-1384(1387)
195 KOG0649 WD40 repeat protein [G 99.6 4.5E-13 9.7E-18 145.8 27.0 287 287-658 12-314 (325)
196 KOG0290 Conserved WD40 repeat- 99.6 2E-13 4.3E-18 151.9 24.0 301 277-657 37-362 (364)
197 KOG1334 WD40 repeat protein [G 99.6 2E-14 4.4E-19 168.7 15.6 315 276-662 133-468 (559)
198 KOG0290 Conserved WD40 repeat- 99.6 1.6E-13 3.4E-18 152.7 21.6 243 241-566 94-357 (364)
199 PRK11028 6-phosphogluconolacto 99.6 2.9E-12 6.2E-17 155.1 33.4 276 301-660 6-304 (330)
200 KOG0642 Cell-cycle nuclear pro 99.6 4.4E-14 9.6E-19 168.9 16.7 270 321-665 288-566 (577)
201 PRK11028 6-phosphogluconolacto 99.6 4.1E-12 8.9E-17 153.7 33.6 283 260-618 7-304 (330)
202 cd05529 Bromo_WDR9_I_like Brom 99.5 1.3E-14 2.9E-19 150.4 9.5 126 1587-1715 2-128 (128)
203 KOG0303 Actin-binding protein 99.5 3.7E-13 8.1E-18 154.8 21.6 227 280-597 76-319 (472)
204 KOG1523 Actin-related protein 99.5 1.5E-12 3.3E-17 147.1 24.5 259 281-609 6-269 (361)
205 KOG1523 Actin-related protein 99.5 2.5E-12 5.5E-17 145.3 25.5 218 238-505 5-237 (361)
206 PF02239 Cytochrom_D1: Cytochr 99.5 8.6E-12 1.9E-16 152.6 29.8 341 256-669 6-356 (369)
207 KOG0303 Actin-binding protein 99.5 2.5E-12 5.4E-17 148.1 23.3 212 392-662 76-296 (472)
208 KOG1524 WD40 repeat-containing 99.5 7.9E-13 1.7E-17 156.2 19.3 267 283-657 12-283 (737)
209 KOG1524 WD40 repeat-containing 99.5 1.7E-12 3.6E-17 153.5 20.2 264 241-615 12-283 (737)
210 KOG0649 WD40 repeat protein [G 99.5 6.8E-12 1.5E-16 136.8 23.3 279 244-615 11-313 (325)
211 KOG0771 Prolactin regulatory e 99.5 5.8E-12 1.3E-16 147.4 24.0 197 401-661 148-355 (398)
212 KOG2110 Uncharacterized conser 99.5 1.9E-11 4.1E-16 140.7 27.1 240 285-663 5-251 (391)
213 PRK01742 tolB translocation pr 99.5 2.3E-12 5E-17 161.6 21.5 235 306-641 183-426 (429)
214 KOG1310 WD40 repeat protein [G 99.5 1.5E-12 3.3E-17 154.1 18.2 187 277-504 42-231 (758)
215 KOG2110 Uncharacterized conser 99.5 3.4E-11 7.3E-16 138.7 28.6 316 243-661 5-331 (391)
216 KOG1786 Lysosomal trafficking 99.4 1E-14 2.2E-19 195.8 -1.6 128 22-153 469-628 (1081)
217 KOG0771 Prolactin regulatory e 99.4 1.2E-12 2.6E-17 153.0 15.6 203 247-504 148-354 (398)
218 PRK01742 tolB translocation pr 99.4 6.3E-12 1.4E-16 157.7 23.4 235 264-598 183-426 (429)
219 PF02239 Cytochrom_D1: Cytochr 99.4 3.7E-11 8.1E-16 147.0 28.8 315 230-627 23-356 (369)
220 KOG2315 Predicted translation 99.4 5.4E-11 1.2E-15 143.0 28.7 321 244-665 35-394 (566)
221 KOG1240 Protein kinase contain 99.4 1.2E-11 2.5E-16 158.2 24.2 280 312-665 1034-1339(1431)
222 KOG2321 WD40 repeat protein [G 99.4 3.1E-11 6.7E-16 144.4 24.3 288 283-659 49-342 (703)
223 KOG1272 WD40-repeat-containing 99.4 1.4E-12 3E-17 152.8 12.0 281 285-665 129-414 (545)
224 PRK03629 tolB translocation pr 99.3 4.1E-10 8.9E-15 141.3 31.3 234 308-641 180-428 (429)
225 KOG2394 WD40 protein DMR-N9 [G 99.3 7.1E-11 1.5E-15 140.7 22.6 197 406-640 182-384 (636)
226 PRK03629 tolB translocation pr 99.3 2.6E-10 5.7E-15 143.0 27.8 234 265-597 179-427 (429)
227 PRK04922 tolB translocation pr 99.3 7.3E-10 1.6E-14 139.4 30.6 235 307-640 184-432 (433)
228 KOG2111 Uncharacterized conser 99.3 2E-09 4.3E-14 122.4 29.4 239 287-619 7-257 (346)
229 KOG2394 WD40 protein DMR-N9 [G 99.3 1.2E-10 2.6E-15 138.8 19.8 245 245-597 125-384 (636)
230 PRK05137 tolB translocation pr 99.3 1E-09 2.3E-14 138.1 28.4 234 265-597 182-432 (435)
231 KOG2139 WD40 repeat protein [G 99.3 2.9E-09 6.4E-14 122.2 28.5 296 244-617 99-430 (445)
232 PRK04922 tolB translocation pr 99.3 5.7E-10 1.2E-14 140.3 25.5 235 265-597 184-432 (433)
233 KOG1354 Serine/threonine prote 99.3 4.6E-10 1E-14 127.9 21.6 290 285-621 25-362 (433)
234 PRK02889 tolB translocation pr 99.2 6.5E-10 1.4E-14 139.5 25.5 235 265-597 176-424 (427)
235 cd05497 Bromo_Brdt_I_like Brom 99.2 7E-12 1.5E-16 126.2 6.2 95 1621-1715 11-107 (107)
236 KOG2321 WD40 repeat protein [G 99.2 9.9E-10 2.1E-14 131.8 23.8 286 241-617 49-342 (703)
237 PRK02889 tolB translocation pr 99.2 7.9E-10 1.7E-14 138.8 24.6 240 307-641 176-425 (427)
238 KOG1409 Uncharacterized conser 99.2 2.8E-10 6E-15 129.9 18.2 335 233-661 14-395 (404)
239 COG5354 Uncharacterized protei 99.2 9.7E-09 2.1E-13 122.6 31.2 322 239-662 28-397 (561)
240 KOG4497 Uncharacterized conser 99.2 7.9E-10 1.7E-14 125.1 20.7 322 290-683 13-419 (447)
241 KOG3881 Uncharacterized conser 99.2 4.3E-10 9.3E-15 130.5 19.1 273 285-639 55-340 (412)
242 KOG2139 WD40 repeat protein [G 99.2 1.7E-09 3.6E-14 124.1 22.6 238 327-650 98-365 (445)
243 cd05507 Bromo_brd8_like Bromod 99.2 2.8E-11 6.2E-16 121.4 7.0 100 1612-1715 4-103 (104)
244 KOG2111 Uncharacterized conser 99.2 4.5E-09 9.7E-14 119.5 25.1 117 546-663 137-259 (346)
245 cd05509 Bromo_gcn5_like Bromod 99.2 3.5E-11 7.5E-16 120.4 6.7 86 1630-1715 16-101 (101)
246 KOG2041 WD40 repeat protein [G 99.2 5.1E-09 1.1E-13 127.3 26.0 390 243-724 14-436 (1189)
247 PRK05137 tolB translocation pr 99.2 4.7E-09 1E-13 132.2 27.4 235 307-641 182-433 (435)
248 TIGR03300 assembly_YfgL outer 99.2 1.6E-08 3.4E-13 124.9 30.9 310 255-657 65-376 (377)
249 cd05511 Bromo_TFIID Bromodomai 99.2 3.5E-11 7.7E-16 122.2 5.9 88 1628-1715 13-100 (112)
250 KOG0974 WD-repeat protein WDR6 99.1 6E-09 1.3E-13 133.2 26.8 150 250-429 140-290 (967)
251 cd05495 Bromo_cbp_like Bromodo 99.1 6E-11 1.3E-15 119.8 6.9 102 1610-1714 2-105 (108)
252 cd05504 Bromo_Acf1_like Bromod 99.1 7.6E-11 1.6E-15 120.3 7.1 102 1610-1715 11-112 (115)
253 PF08662 eIF2A: Eukaryotic tra 99.1 2.2E-09 4.7E-14 120.3 19.5 119 545-670 59-188 (194)
254 smart00297 BROMO bromo domain. 99.1 1.1E-10 2.4E-15 117.9 7.6 103 1613-1715 5-107 (107)
255 cd05502 Bromo_tif1_like Bromod 99.1 1.2E-10 2.5E-15 118.1 7.6 102 1608-1714 1-105 (109)
256 cd05500 Bromo_BDF1_2_I Bromodo 99.1 1.2E-10 2.5E-15 116.9 7.4 100 1608-1711 1-102 (103)
257 cd05508 Bromo_RACK7 Bromodomai 99.1 9.3E-11 2E-15 116.2 6.6 82 1630-1711 17-98 (99)
258 KOG1912 WD40 repeat protein [G 99.1 1.5E-08 3.3E-13 124.9 26.1 422 231-665 43-556 (1062)
259 cd05496 Bromo_WDR9_II Bromodom 99.1 1.2E-10 2.5E-15 119.2 6.7 99 1613-1715 7-106 (119)
260 KOG0974 WD-repeat protein WDR6 99.1 6.3E-09 1.4E-13 133.0 23.2 197 246-507 90-291 (967)
261 TIGR02800 propeller_TolB tol-p 99.1 1.9E-08 4.1E-13 125.7 26.9 233 265-595 170-416 (417)
262 KOG3881 Uncharacterized conser 99.1 7E-09 1.5E-13 120.6 20.6 259 242-583 54-328 (412)
263 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.5E-07 3.2E-12 113.6 32.5 277 307-668 27-338 (352)
264 cd05517 Bromo_polybromo_II Bro 99.0 2.8E-10 6.1E-15 113.8 7.1 98 1613-1711 5-102 (103)
265 cd05499 Bromo_BDF1_2_II Bromod 99.0 2.6E-10 5.7E-15 114.2 6.3 95 1613-1711 5-101 (102)
266 cd05515 Bromo_polybromo_V Brom 99.0 4.4E-10 9.6E-15 113.0 7.3 100 1613-1713 5-104 (105)
267 cd05528 Bromo_AAA Bromodomain; 99.0 4.1E-10 9E-15 114.2 7.0 99 1613-1715 5-107 (112)
268 PF10282 Lactonase: Lactonase, 99.0 7.5E-07 1.6E-11 109.0 36.6 317 258-638 2-345 (345)
269 KOG2314 Translation initiation 99.0 5.7E-08 1.2E-12 116.7 25.1 307 246-651 213-558 (698)
270 COG5354 Uncharacterized protei 99.0 9.6E-08 2.1E-12 114.3 26.9 302 244-652 72-421 (561)
271 COG4946 Uncharacterized protei 99.0 1.7E-06 3.7E-11 102.5 36.6 141 542-684 356-506 (668)
272 cd05505 Bromo_WSTF_like Bromod 99.0 4.3E-10 9.3E-15 111.3 6.1 82 1631-1712 16-97 (97)
273 KOG2315 Predicted translation 99.0 1E-07 2.2E-12 115.5 27.1 301 245-641 75-411 (566)
274 cd05510 Bromo_SPT7_like Bromod 99.0 5.8E-10 1.3E-14 113.1 7.0 85 1631-1715 24-109 (112)
275 cd05520 Bromo_polybromo_III Br 99.0 6.7E-10 1.5E-14 111.1 6.8 96 1615-1711 7-102 (103)
276 cd05516 Bromo_SNF2L2 Bromodoma 99.0 8.5E-10 1.8E-14 111.3 7.6 102 1613-1715 6-107 (107)
277 PRK00178 tolB translocation pr 99.0 9.1E-08 2E-12 120.4 27.6 234 266-597 180-427 (430)
278 cd05503 Bromo_BAZ2A_B_like Bro 99.0 5.5E-10 1.2E-14 110.8 6.0 81 1631-1711 16-96 (97)
279 PRK01029 tolB translocation pr 99.0 1.6E-07 3.5E-12 117.9 28.7 249 307-642 165-426 (428)
280 cd05513 Bromo_brd7_like Bromod 99.0 5.3E-10 1.2E-14 110.6 5.1 80 1630-1709 16-95 (98)
281 cd05524 Bromo_polybromo_I Brom 99.0 9.3E-10 2E-14 112.0 6.9 103 1612-1715 6-108 (113)
282 PRK04792 tolB translocation pr 99.0 9.2E-08 2E-12 120.8 26.3 234 266-597 199-446 (448)
283 KOG1912 WD40 repeat protein [G 99.0 5.4E-08 1.2E-12 120.2 22.8 175 245-448 17-205 (1062)
284 PF08662 eIF2A: Eukaryotic tra 99.0 2.7E-08 5.8E-13 111.6 18.8 148 248-428 10-180 (194)
285 TIGR02800 propeller_TolB tol-p 98.9 1.3E-07 2.9E-12 118.1 26.9 233 307-638 170-416 (417)
286 TIGR02658 TTQ_MADH_Hv methylam 98.9 2.1E-06 4.6E-11 103.8 35.8 285 265-631 27-344 (352)
287 cd05519 Bromo_SNF2 Bromodomain 98.9 1.4E-09 3.1E-14 109.1 7.2 99 1612-1711 4-102 (103)
288 PRK04792 tolB translocation pr 98.9 1E-07 2.2E-12 120.4 25.5 234 308-640 199-446 (448)
289 cd05512 Bromo_brd1_like Bromod 98.9 8.5E-10 1.8E-14 109.4 5.3 79 1630-1708 16-94 (98)
290 PF04762 IKI3: IKI3 family; I 98.9 1.2E-06 2.5E-11 118.5 36.1 351 243-662 120-566 (928)
291 cd05518 Bromo_polybromo_IV Bro 98.9 2.1E-09 4.6E-14 107.5 6.8 96 1615-1711 7-102 (103)
292 PF10282 Lactonase: Lactonase, 98.9 9.9E-07 2.1E-11 107.9 31.5 276 244-595 37-345 (345)
293 PF04762 IKI3: IKI3 family; I 98.9 3.7E-06 7.9E-11 113.9 39.5 349 245-662 23-458 (928)
294 cd05521 Bromo_Rsc1_2_I Bromodo 98.9 2.8E-09 6.1E-14 107.0 7.4 98 1613-1713 6-103 (106)
295 PRK00178 tolB translocation pr 98.9 2.5E-07 5.3E-12 116.5 26.5 235 308-641 180-428 (430)
296 cd05498 Bromo_Brdt_II_like Bro 98.9 2.3E-09 5E-14 107.5 6.5 81 1631-1711 19-101 (102)
297 PRK01029 tolB translocation pr 98.9 5.2E-07 1.1E-11 113.3 28.1 242 265-598 165-425 (428)
298 PF00439 Bromodomain: Bromodom 98.9 2.5E-09 5.3E-14 103.2 5.5 73 1631-1703 12-84 (84)
299 KOG4190 Uncharacterized conser 98.9 9.7E-09 2.1E-13 121.7 11.1 175 235-431 727-910 (1034)
300 KOG4547 WD40 repeat-containing 98.9 6.3E-08 1.4E-12 118.2 18.4 213 407-661 3-221 (541)
301 TIGR03300 assembly_YfgL outer 98.9 1.1E-06 2.5E-11 108.5 30.1 279 297-666 65-344 (377)
302 KOG0309 Conserved WD40 repeat- 98.9 1.9E-08 4E-13 123.3 13.7 287 243-619 24-340 (1081)
303 cd05501 Bromo_SP100C_like Brom 98.8 6.1E-09 1.3E-13 103.2 7.9 70 1644-1714 29-98 (102)
304 KOG1354 Serine/threonine prote 98.8 1.2E-07 2.6E-12 108.6 19.2 273 242-578 24-362 (433)
305 KOG2314 Translation initiation 98.8 9.1E-07 2E-11 106.6 26.8 288 288-665 213-530 (698)
306 KOG2041 WD40 repeat protein [G 98.8 2.6E-07 5.7E-12 112.9 22.4 291 285-660 14-337 (1189)
307 cd05525 Bromo_ASH1 Bromodomain 98.8 7E-09 1.5E-13 104.3 7.7 95 1615-1710 9-103 (106)
308 KOG4547 WD40 repeat-containing 98.8 1.6E-07 3.5E-12 114.7 19.8 169 252-459 2-195 (541)
309 cd05506 Bromo_plant1 Bromodoma 98.8 4.2E-09 9.1E-14 105.1 5.3 80 1632-1711 17-98 (99)
310 KOG0280 Uncharacterized conser 98.8 5.1E-07 1.1E-11 102.1 21.6 277 306-663 45-336 (339)
311 KOG1409 Uncharacterized conser 98.8 2.1E-07 4.6E-12 106.9 17.5 254 318-662 15-272 (404)
312 PRK11138 outer membrane biogen 98.7 8.7E-06 1.9E-10 101.5 33.4 310 255-659 69-393 (394)
313 cd05522 Bromo_Rsc1_2_II Bromod 98.7 1.4E-08 3.1E-13 102.0 6.9 96 1614-1710 7-102 (104)
314 KOG1064 RAVE (regulator of V-A 98.7 3.6E-08 7.8E-13 130.3 12.2 225 298-628 2181-2408(2439)
315 KOG1474 Transcription initiati 98.7 1.3E-08 2.8E-13 132.3 7.3 102 1609-1714 220-323 (640)
316 cd04369 Bromodomain Bromodomai 98.7 2.5E-08 5.4E-13 98.5 6.8 81 1631-1711 18-98 (99)
317 KOG1064 RAVE (regulator of V-A 98.7 1.3E-07 2.9E-12 125.2 15.0 221 258-584 2183-2407(2439)
318 PLN02919 haloacid dehalogenase 98.7 1.1E-05 2.4E-10 111.2 33.3 275 248-623 572-893 (1057)
319 PLN02919 haloacid dehalogenase 98.6 1.1E-05 2.5E-10 111.1 32.7 279 331-664 571-892 (1057)
320 KOG0882 Cyclophilin-related pe 98.6 9.8E-07 2.1E-11 104.3 18.3 321 241-615 7-369 (558)
321 cd05492 Bromo_ZMYND11 Bromodom 98.6 6.2E-08 1.3E-12 97.5 6.1 72 1644-1715 35-106 (109)
322 COG5170 CDC55 Serine/threonine 98.6 1.5E-06 3.2E-11 98.4 16.3 285 285-617 26-366 (460)
323 KOG4190 Uncharacterized conser 98.5 3.4E-07 7.4E-12 108.9 11.5 290 278-656 728-1032(1034)
324 cd05526 Bromo_polybromo_VI Bro 98.5 3E-07 6.4E-12 92.3 9.4 97 1613-1711 5-103 (110)
325 COG2706 3-carboxymuconate cycl 98.5 9.4E-05 2E-09 86.9 30.3 279 239-595 35-344 (346)
326 COG2706 3-carboxymuconate cycl 98.5 0.00023 5.1E-09 83.7 33.0 274 306-665 15-328 (346)
327 KOG0280 Uncharacterized conser 98.5 3.2E-05 7E-10 87.9 23.5 269 264-621 45-336 (339)
328 COG4946 Uncharacterized protei 98.4 0.0001 2.2E-09 88.0 28.3 145 254-430 331-480 (668)
329 KOG3914 WD repeat protein WDR4 98.4 1.6E-06 3.6E-11 102.0 13.7 88 538-627 144-232 (390)
330 KOG0309 Conserved WD40 repeat- 98.4 1.3E-06 2.9E-11 107.6 13.0 291 285-662 24-341 (1081)
331 PF15492 Nbas_N: Neuroblastoma 98.4 4.9E-05 1.1E-09 87.0 24.0 151 248-417 2-167 (282)
332 KOG1832 HIV-1 Vpr-binding prot 98.4 4.2E-07 9E-12 113.3 7.3 166 231-429 1089-1257(1516)
333 PRK11138 outer membrane biogen 98.4 0.00018 4E-09 89.7 29.7 274 297-666 69-359 (394)
334 COG5170 CDC55 Serine/threonine 98.3 3.3E-06 7.2E-11 95.6 11.7 236 397-662 26-311 (460)
335 KOG4532 WD40-like repeat conta 98.3 4E-05 8.6E-10 86.0 19.3 198 256-507 85-285 (344)
336 KOG0882 Cyclophilin-related pe 98.3 2.6E-05 5.5E-10 92.6 18.6 297 284-657 8-369 (558)
337 PRK04043 tolB translocation pr 98.3 0.00031 6.7E-09 88.2 29.3 135 265-430 169-312 (419)
338 PF15492 Nbas_N: Neuroblastoma 98.2 0.00036 7.9E-09 80.0 25.8 214 398-666 44-265 (282)
339 KOG4532 WD40-like repeat conta 98.2 0.00018 4E-09 80.9 22.7 231 263-584 50-291 (344)
340 KOG4714 Nucleoporin [Nuclear s 98.2 1.7E-05 3.8E-10 88.6 14.7 197 246-505 39-255 (319)
341 KOG1832 HIV-1 Vpr-binding prot 98.2 2E-06 4.3E-11 107.5 7.6 217 392-691 1096-1317(1516)
342 PRK04043 tolB translocation pr 98.2 0.00035 7.6E-09 87.7 27.3 222 308-627 170-408 (419)
343 KOG3914 WD repeat protein WDR4 98.2 7.8E-06 1.7E-10 96.5 11.4 122 244-370 111-233 (390)
344 PF08450 SGL: SMP-30/Gluconola 98.2 0.00085 1.9E-08 78.0 27.7 229 290-606 4-244 (246)
345 PF13360 PQQ_2: PQQ-like domai 98.1 0.00056 1.2E-08 78.5 25.1 140 263-430 1-143 (238)
346 PF13360 PQQ_2: PQQ-like domai 98.1 0.0005 1.1E-08 78.9 24.7 223 351-665 2-235 (238)
347 cd00216 PQQ_DH Dehydrogenases 98.1 0.0019 4E-08 83.1 32.0 318 255-643 61-450 (488)
348 COG5076 Transcription factor i 98.1 3.8E-06 8.1E-11 103.6 7.1 87 1628-1714 161-247 (371)
349 KOG4714 Nucleoporin [Nuclear s 98.1 3.7E-05 8.1E-10 86.0 13.7 110 548-658 182-316 (319)
350 PF00400 WD40: WD domain, G-be 98.1 1E-05 2.2E-10 66.0 6.6 38 234-271 2-39 (39)
351 KOG1920 IkappaB kinase complex 98.1 0.0039 8.4E-08 82.6 33.0 265 284-617 67-364 (1265)
352 cd05491 Bromo_TBP7_like Bromod 98.1 4.7E-06 1E-10 83.8 5.3 45 1650-1694 59-103 (119)
353 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.016 3.5E-07 65.5 30.6 109 255-368 23-131 (354)
354 KOG2695 WD40 repeat protein [G 97.9 3.1E-05 6.7E-10 89.5 9.7 127 544-671 251-387 (425)
355 PF08450 SGL: SMP-30/Gluconola 97.9 0.0038 8.2E-08 72.6 27.4 194 248-504 4-213 (246)
356 PF00400 WD40: WD domain, G-be 97.9 2.6E-05 5.6E-10 63.6 6.4 39 275-313 1-39 (39)
357 PF07433 DUF1513: Protein of u 97.9 0.0046 1E-07 73.1 26.6 210 247-509 8-252 (305)
358 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.0029 6.3E-08 77.9 24.5 302 252-649 1-346 (353)
359 KOG1645 RING-finger-containing 97.8 0.00074 1.6E-08 79.9 17.5 94 267-363 175-269 (463)
360 KOG2066 Vacuolar assembly/sort 97.8 0.00057 1.2E-08 86.8 17.6 150 243-430 39-190 (846)
361 KOG2695 WD40 repeat protein [G 97.8 3.7E-05 8E-10 88.9 6.7 127 243-373 252-389 (425)
362 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.074 1.6E-06 69.0 37.5 110 255-370 69-199 (527)
363 PF07433 DUF1513: Protein of u 97.8 0.011 2.4E-07 69.9 27.1 253 330-658 7-283 (305)
364 PF06433 Me-amine-dh_H: Methyl 97.8 0.0098 2.1E-07 71.1 26.7 283 265-628 17-330 (342)
365 KOG1275 PAB-dependent poly(A) 97.7 0.00048 1E-08 88.0 16.5 185 254-502 146-340 (1118)
366 KOG1645 RING-finger-containing 97.7 0.0014 3E-08 77.7 18.4 93 309-429 175-268 (463)
367 KOG3621 WD40 repeat-containing 97.7 0.0064 1.4E-07 76.8 24.4 117 242-361 32-155 (726)
368 cd00216 PQQ_DH Dehydrogenases 97.7 0.013 2.7E-07 75.5 28.1 103 559-666 303-430 (488)
369 KOG1275 PAB-dependent poly(A) 97.7 0.00045 9.7E-09 88.3 14.2 148 253-426 185-341 (1118)
370 KOG1920 IkappaB kinase complex 97.6 0.019 4.2E-07 76.4 28.6 265 327-659 68-364 (1265)
371 KOG3617 WD40 and TPR repeat-co 97.5 0.0019 4.2E-08 81.6 17.2 107 249-360 21-131 (1416)
372 KOG2114 Vacuolar assembly/sort 97.5 0.0054 1.2E-07 78.8 21.2 201 404-661 30-244 (933)
373 KOG2066 Vacuolar assembly/sort 97.5 0.0018 3.8E-08 82.6 16.8 145 254-427 82-233 (846)
374 PF06433 Me-amine-dh_H: Methyl 97.5 0.033 7.1E-07 66.8 25.9 278 307-667 17-327 (342)
375 PF11768 DUF3312: Protein of u 97.5 0.058 1.3E-06 67.8 28.9 115 545-662 205-331 (545)
376 KOG2114 Vacuolar assembly/sort 97.5 0.012 2.5E-07 75.9 23.1 224 287-588 27-257 (933)
377 PF14583 Pectate_lyase22: Olig 97.5 0.07 1.5E-06 65.1 28.7 95 271-368 16-118 (386)
378 PF04841 Vps16_N: Vps16, N-ter 97.4 0.12 2.5E-06 65.2 31.0 53 545-597 216-269 (410)
379 KOG3617 WD40 and TPR repeat-co 97.4 0.0014 3E-08 82.9 12.9 70 246-315 62-131 (1416)
380 KOG4649 PQQ (pyrrolo-quinoline 97.4 0.058 1.2E-06 61.3 24.1 105 254-361 62-166 (354)
381 PF00930 DPPIV_N: Dipeptidyl p 97.3 0.025 5.4E-07 69.7 23.4 306 294-684 1-345 (353)
382 PRK02888 nitrous-oxide reducta 97.3 0.035 7.5E-07 71.3 24.7 105 553-661 284-405 (635)
383 PF14655 RAB3GAP2_N: Rab3 GTPa 97.2 0.084 1.8E-06 65.8 26.3 90 539-628 301-408 (415)
384 KOG1008 Uncharacterized conser 97.2 0.00044 9.6E-09 85.6 6.4 198 245-505 58-276 (783)
385 PRK02888 nitrous-oxide reducta 97.2 0.054 1.2E-06 69.6 24.8 106 543-650 318-451 (635)
386 KOG1474 Transcription initiati 97.2 9.3E-05 2E-09 96.8 0.0 71 1645-1715 24-94 (640)
387 PF08596 Lgl_C: Lethal giant l 97.1 0.041 8.9E-07 68.6 22.7 299 245-650 3-326 (395)
388 PF11768 DUF3312: Protein of u 97.1 0.0048 1E-07 77.1 14.1 74 241-316 257-330 (545)
389 PF06977 SdiA-regulated: SdiA- 97.0 0.18 3.9E-06 58.9 24.5 205 398-657 22-247 (248)
390 COG0823 TolB Periplasmic compo 96.9 0.064 1.4E-06 67.5 21.7 137 548-686 240-389 (425)
391 KOG1897 Damage-specific DNA bi 96.9 3.3 7.1E-05 55.3 36.0 109 548-660 777-898 (1096)
392 PF00780 CNH: CNH domain; Int 96.8 0.25 5.4E-06 58.4 25.1 143 253-430 5-168 (275)
393 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.8 0.51 1.1E-05 61.3 29.5 68 297-369 69-147 (527)
394 COG3391 Uncharacterized conser 96.8 1.3 2.8E-05 55.4 31.5 286 267-641 13-309 (381)
395 PF04053 Coatomer_WDAD: Coatom 96.7 0.14 3.1E-06 64.6 22.3 146 239-427 28-173 (443)
396 PF14583 Pectate_lyase22: Olig 96.7 0.31 6.7E-06 59.7 23.8 88 250-337 42-132 (386)
397 COG0823 TolB Periplasmic compo 96.6 0.1 2.2E-06 65.7 20.6 205 308-603 174-385 (425)
398 KOG3621 WD40 repeat-containing 96.6 0.023 5E-07 72.0 14.5 218 396-675 32-260 (726)
399 PF04841 Vps16_N: Vps16, N-ter 96.6 1.1 2.4E-05 56.4 29.7 65 249-315 34-109 (410)
400 PF08596 Lgl_C: Lethal giant l 96.6 0.23 5E-06 62.0 22.7 271 329-684 3-324 (395)
401 PF02897 Peptidase_S9_N: Proly 96.5 0.92 2E-05 57.1 28.5 254 288-623 126-409 (414)
402 PF08553 VID27: VID27 cytoplas 96.5 0.091 2E-06 69.8 19.4 136 262-427 501-647 (794)
403 KOG1008 Uncharacterized conser 96.5 0.0015 3.2E-08 81.2 2.9 206 328-618 57-275 (783)
404 smart00320 WD40 WD40 repeats. 96.4 0.0071 1.5E-07 46.4 5.7 38 234-271 3-40 (40)
405 KOG1245 Chromatin remodeling c 96.4 0.0022 4.8E-08 89.3 4.2 82 1627-1709 1313-1394(1404)
406 TIGR03074 PQQ_membr_DH membran 96.3 7.6 0.00016 52.7 38.8 112 255-370 194-354 (764)
407 PF00780 CNH: CNH domain; Int 96.2 3.2 7E-05 49.0 28.7 255 295-629 5-266 (275)
408 smart00320 WD40 WD40 repeats. 96.1 0.014 2.9E-07 44.8 5.6 39 275-313 2-40 (40)
409 PF02897 Peptidase_S9_N: Proly 96.1 2 4.4E-05 54.1 28.1 100 566-665 300-409 (414)
410 KOG4640 Anaphase-promoting com 96.0 0.026 5.6E-07 70.8 10.0 93 244-337 21-115 (665)
411 COG3391 Uncharacterized conser 95.9 3.1 6.7E-05 52.0 27.8 267 245-597 32-308 (381)
412 PF06977 SdiA-regulated: SdiA- 95.8 0.51 1.1E-05 55.2 19.2 171 236-427 14-201 (248)
413 KOG1827 Chromatin remodeling c 95.8 0.017 3.6E-07 73.7 7.3 106 1606-1711 47-154 (629)
414 COG3386 Gluconolactonase [Carb 95.6 2.5 5.4E-05 51.2 24.6 231 292-607 31-275 (307)
415 KOG1897 Damage-specific DNA bi 95.4 15 0.00033 49.4 33.9 119 546-664 488-619 (1096)
416 PF08553 VID27: VID27 cytoplas 95.4 2 4.4E-05 57.5 24.3 133 296-460 492-630 (794)
417 PF04053 Coatomer_WDAD: Coatom 95.4 3.2 6.9E-05 52.8 25.2 127 283-460 30-156 (443)
418 PF14783 BBS2_Mid: Ciliary BBS 95.3 0.75 1.6E-05 46.9 15.4 103 246-355 2-109 (111)
419 COG3490 Uncharacterized protei 95.2 3.4 7.3E-05 48.3 22.0 254 330-658 70-346 (366)
420 PRK13616 lipoprotein LpqB; Pro 95.2 0.57 1.2E-05 61.5 18.5 154 243-427 349-525 (591)
421 PF07995 GSDH: Glucose / Sorbo 95.2 4.3 9.2E-05 49.8 25.1 68 588-655 253-330 (331)
422 PF03178 CPSF_A: CPSF A subuni 95.1 0.8 1.7E-05 55.7 18.6 143 255-428 42-203 (321)
423 KOG4640 Anaphase-promoting com 95.1 0.086 1.9E-06 66.4 10.1 95 544-640 19-115 (665)
424 PF03178 CPSF_A: CPSF A subuni 95.0 1.2 2.5E-05 54.3 19.6 186 409-657 42-262 (321)
425 KOG2079 Vacuolar assembly/sort 95.0 0.054 1.2E-06 71.5 7.9 101 255-360 99-203 (1206)
426 KOG1472 Histone acetyltransfer 94.9 0.012 2.5E-07 76.3 1.8 79 1636-1714 627-705 (720)
427 KOG2395 Protein involved in va 94.9 0.93 2E-05 56.5 17.6 143 254-427 344-500 (644)
428 PHA02713 hypothetical protein; 94.8 1.4 2.9E-05 58.0 20.7 71 556-629 463-544 (557)
429 KOG1786 Lysosomal trafficking 94.7 0.01 2.2E-07 81.9 0.7 54 36-90 1008-1080(1081)
430 PF05096 Glu_cyclase_2: Glutam 94.7 2.1 4.6E-05 50.2 19.3 200 233-460 33-242 (264)
431 PRK13616 lipoprotein LpqB; Pro 94.5 2 4.4E-05 56.5 21.0 116 284-423 348-472 (591)
432 PHA02713 hypothetical protein; 94.5 1.6 3.5E-05 57.2 20.2 91 568-663 433-536 (557)
433 PF14783 BBS2_Mid: Ciliary BBS 94.3 1 2.2E-05 45.9 13.6 65 288-359 2-70 (111)
434 KOG4441 Proteins containing BT 94.1 2.7 5.8E-05 55.3 20.9 64 555-621 474-549 (571)
435 KOG4441 Proteins containing BT 94.1 2.5 5.4E-05 55.6 20.5 103 556-663 427-549 (571)
436 KOG4499 Ca2+-binding protein R 93.7 11 0.00025 43.0 21.4 46 551-596 217-262 (310)
437 KOG0386 Chromatin remodeling c 93.7 0.054 1.2E-06 71.3 4.1 101 1611-1712 1027-1127(1157)
438 COG3204 Uncharacterized protei 93.7 6.4 0.00014 46.6 20.2 130 281-428 81-211 (316)
439 PRK10115 protease 2; Provision 93.7 37 0.00081 45.9 33.2 115 244-360 127-255 (686)
440 COG3490 Uncharacterized protei 93.5 3.6 7.9E-05 48.1 17.6 98 248-348 72-179 (366)
441 KOG2079 Vacuolar assembly/sort 93.5 0.18 4E-06 66.8 8.3 98 556-654 98-199 (1206)
442 PF10647 Gmad1: Lipoprotein Lp 93.4 2 4.3E-05 50.6 16.2 157 245-419 25-187 (253)
443 KOG1898 Splicing factor 3b, su 93.1 47 0.001 45.4 31.7 74 284-357 581-668 (1205)
444 COG3204 Uncharacterized protei 92.8 9.2 0.0002 45.3 19.8 172 239-428 81-264 (316)
445 KOG2444 WD40 repeat protein [G 92.8 0.23 5E-06 56.1 6.7 99 556-662 69-168 (238)
446 COG3386 Gluconolactonase [Carb 92.7 11 0.00023 45.8 21.3 118 547-666 112-248 (307)
447 PF10647 Gmad1: Lipoprotein Lp 92.6 26 0.00057 41.3 23.9 146 287-460 25-177 (253)
448 PF14870 PSII_BNR: Photosynthe 92.4 22 0.00047 43.1 23.1 147 281-459 140-286 (302)
449 TIGR03074 PQQ_membr_DH membran 91.9 11 0.00024 51.2 22.0 166 484-667 258-484 (764)
450 KOG2395 Protein involved in va 91.9 13 0.00028 46.9 20.4 135 296-460 344-483 (644)
451 KOG0955 PHD finger protein BR1 91.1 0.22 4.9E-06 67.6 5.0 77 1636-1712 586-662 (1051)
452 KOG2444 WD40 repeat protein [G 91.0 0.53 1.2E-05 53.3 7.0 103 255-360 70-177 (238)
453 PF14870 PSII_BNR: Photosynthe 90.9 9.4 0.0002 46.1 18.0 156 240-424 141-301 (302)
454 PF07995 GSDH: Glucose / Sorbo 90.4 53 0.0011 40.4 28.8 75 537-613 245-330 (331)
455 KOG3630 Nuclear pore complex, 90.2 2.7 5.9E-05 56.7 13.2 140 286-459 101-254 (1405)
456 KOG4499 Ca2+-binding protein R 90.0 19 0.00042 41.2 17.8 174 257-459 73-264 (310)
457 PHA03098 kelch-like protein; P 89.8 8.6 0.00019 50.2 18.0 64 556-622 389-468 (534)
458 KOG3630 Nuclear pore complex, 89.8 3 6.6E-05 56.2 13.3 142 545-688 100-265 (1405)
459 PF10168 Nup88: Nuclear pore c 89.6 40 0.00087 45.6 23.8 88 397-507 84-182 (717)
460 PF05694 SBP56: 56kDa selenium 89.5 29 0.00062 43.6 20.4 115 254-371 86-241 (461)
461 PF15390 DUF4613: Domain of un 89.5 9.8 0.00021 48.7 16.7 116 545-662 56-188 (671)
462 PF10168 Nup88: Nuclear pore c 89.5 48 0.001 44.9 24.4 79 285-363 84-182 (717)
463 PRK13684 Ycf48-like protein; P 89.3 16 0.00035 44.9 18.8 153 243-426 172-330 (334)
464 PF12894 Apc4_WD40: Anaphase-p 89.2 0.89 1.9E-05 39.3 5.4 33 630-663 11-43 (47)
465 KOG0008 Transcription initiati 88.8 0.25 5.4E-06 66.9 2.7 107 1605-1712 1373-1479(1563)
466 PF12894 Apc4_WD40: Anaphase-p 88.4 1.3 2.8E-05 38.3 5.9 34 285-319 11-44 (47)
467 KOG1916 Nuclear protein, conta 87.6 1 2.2E-05 58.9 6.8 71 553-623 243-328 (1283)
468 PHA03098 kelch-like protein; P 87.2 14 0.00031 48.2 17.4 64 253-318 293-369 (534)
469 TIGR03118 PEPCTERM_chp_1 conse 86.6 82 0.0018 38.0 23.0 228 246-511 25-286 (336)
470 PRK10115 protease 2; Provision 86.6 1.4E+02 0.003 40.6 32.2 72 287-362 128-209 (686)
471 KOG2280 Vacuolar assembly/sort 86.5 60 0.0013 43.0 21.2 51 306-361 63-113 (829)
472 TIGR03118 PEPCTERM_chp_1 conse 85.2 96 0.0021 37.4 24.4 75 554-629 209-290 (336)
473 COG5276 Uncharacterized conser 84.4 1E+02 0.0022 37.0 28.7 160 239-429 37-201 (370)
474 COG5167 VID27 Protein involved 83.9 36 0.00079 42.9 16.8 142 254-428 478-633 (776)
475 PLN00033 photosystem II stabil 83.6 62 0.0014 40.8 19.7 149 244-424 239-396 (398)
476 PF12234 Rav1p_C: RAVE protein 83.2 19 0.0004 47.6 15.2 116 239-359 25-155 (631)
477 PHA02790 Kelch-like protein; P 83.1 34 0.00074 44.3 17.8 99 556-662 362-472 (480)
478 PF08728 CRT10: CRT10; InterP 82.4 38 0.00083 45.2 17.6 114 544-659 99-245 (717)
479 cd05494 Bromodomain_1 Bromodom 82.4 0.42 9.2E-06 49.2 0.1 81 1611-1695 3-92 (114)
480 PF15390 DUF4613: Domain of un 82.0 36 0.00078 43.9 16.3 117 241-360 54-186 (671)
481 PF05096 Glu_cyclase_2: Glutam 81.9 24 0.00052 41.7 14.0 113 548-665 47-162 (264)
482 PF08728 CRT10: CRT10; InterP 81.5 41 0.00089 45.0 17.4 145 255-426 49-245 (717)
483 KOG2377 Uncharacterized conser 80.8 1.4E+02 0.0031 37.5 20.1 137 289-460 26-165 (657)
484 PHA02790 Kelch-like protein; P 80.6 37 0.00081 43.9 16.8 62 254-317 271-341 (480)
485 PF14655 RAB3GAP2_N: Rab3 GTPa 80.2 12 0.00027 47.0 11.7 92 233-324 297-407 (415)
486 KOG4659 Uncharacterized conser 80.0 2.9E+02 0.0062 39.2 27.6 28 539-566 655-682 (1899)
487 TIGR02604 Piru_Ver_Nterm putat 79.8 30 0.00066 43.0 15.2 99 547-649 15-142 (367)
488 TIGR02604 Piru_Ver_Nterm putat 79.6 43 0.00093 41.7 16.4 95 244-340 14-136 (367)
489 PLN00033 photosystem II stabil 79.2 53 0.0011 41.5 16.9 137 548-691 241-395 (398)
490 PF14727 PHTB1_N: PTHB1 N-term 78.8 2E+02 0.0043 36.7 27.8 145 255-427 37-204 (418)
491 PRK13684 Ycf48-like protein; P 78.6 34 0.00075 42.0 14.9 141 545-691 172-327 (334)
492 PF12234 Rav1p_C: RAVE protein 78.5 26 0.00056 46.3 14.2 127 285-427 29-156 (631)
493 KOG4460 Nuclear pore complex, 77.9 38 0.00083 42.8 14.4 27 546-572 104-130 (741)
494 PF05694 SBP56: 56kDa selenium 77.9 35 0.00075 42.9 14.2 173 251-429 137-344 (461)
495 KOG1916 Nuclear protein, conta 77.0 0.55 1.2E-05 61.3 -1.3 152 306-503 110-264 (1283)
496 KOG3616 Selective LIM binding 76.3 35 0.00076 44.4 13.7 73 243-319 14-86 (1636)
497 KOG1898 Splicing factor 3b, su 75.8 3.4E+02 0.0073 37.8 25.3 68 243-310 582-666 (1205)
498 KOG4659 Uncharacterized conser 75.6 2E+02 0.0043 40.6 20.7 18 549-566 596-613 (1899)
499 KOG2280 Vacuolar assembly/sort 74.4 59 0.0013 43.1 15.3 37 629-665 215-251 (829)
500 PF08801 Nucleoporin_N: Nup133 73.7 62 0.0013 41.1 15.8 169 244-428 27-220 (422)
No 1
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=100.00 E-value=6.4e-142 Score=1271.62 Aligned_cols=1094 Identities=51% Similarity=0.799 Sum_probs=836.3
Q ss_pred cchhHHHHHHHHhhccCchhhHHHHHHHHHHhcCCCccccccccccCCCCCCCCCCCCCccccCcccccccCCCCChHHH
Q 048801 47 VDLREVYFLIIHFLSSGPCQRTLGLLWNELLEHQLLPRRYHAWFSRSGVNSGNDNDDGISFPLSYNKLVERYPHIEWDHL 126 (1715)
Q Consensus 47 ~~i~ElyfLi~~fL~~gp~~~~~~~L~ReALESeyVS~~LH~WFGyKQrG~eAv~A~NVFh~LTYEG~Vdld~i~dp~~r 126 (1715)
.++.|+||||.+||+.|||.+++.+|..|++|.++++.+.|.|.+...- -.||.+|--++|+.++|+
T Consensus 13 l~lsevyflil~~lS~gPcert~~vl~~elee~~ll~pr~~~W~sn~~~-------------dd~eslvls~~hI~kdhl 79 (1113)
T KOG0644|consen 13 LDLSEVYFLILHYLSAGPCERTAQVLRQELEEYSLLPPRYHDWESNSGN-------------DDGESLVLSYKHIAKDHL 79 (1113)
T ss_pred cchhhHHHHHHhhcccCchhhcchhhhhhhhhhhccCccccccccCCCC-------------cccceeeccccccchHHH
Confidence 5679999999999999999999999999999999999999999433222 355556666899999999
Q ss_pred HHHHHHHHhcCCCCCCCccCCCCCC---CCCccccccCCccccccccccccccccccCCcccCCCCCCCCceeeeeeccc
Q 048801 127 VKLLRQLLLYKASPFHGRIGGIAPN---AADVPTLLGSGSFSLLECDRSMKYKQVKPLPAYLRWPHMQADQVHGLSLREI 203 (1715)
Q Consensus 127 ~aie~QI~nFGQTP~QL~~~pHPPr---~~~v~sll~~~~~sLl~~~~~~~~~~~~~p~~~~r~~~~~~d~V~~ls~~~~ 203 (1715)
..|++||. | .+..|.||+ .+.++++|+++.++|+...+.+... ..++.+.+|+|+|+++|+.+.++..
T Consensus 80 l~i~kqlv-----~--~~d~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~--~~~~s~~~~~h~~~~~~~~~sl~s~ 150 (1113)
T KOG0644|consen 80 LQILKQLV-----P--MLDKPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHT--VWKGSAFRWPHMHADQVRGVSLRSI 150 (1113)
T ss_pred HHHHHHhc-----c--CcCCCCCcceeeeecccchhcchhHHHHhhhhhcccc--cccccccccccccCcccccceeccC
Confidence 99999994 2 467888998 8899999999999999998877765 6677899999999999999999999
Q ss_pred cCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecC
Q 048801 204 GGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRG 283 (1715)
Q Consensus 204 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~g 283 (1715)
|++|..|+.++.+..+++.+++|..+++.++.++.|.||..+|+|++|+..|++|+||++|..|+||.++++.++..++|
T Consensus 151 ~~~~~~h~~a~~i~~at~~~akPgtmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG 230 (1113)
T KOG0644|consen 151 GGGFEIHHRAPSIGCATFSIAKPGTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRG 230 (1113)
T ss_pred CcchhhhhcCcccccceeeecCcHHHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCC
Q 048801 284 HEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQ 363 (1715)
Q Consensus 284 Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~ 363 (1715)
|.+.|+.++.+.++.++|+++.|..|+||.+.++.++..|.+|++.|++|+|+|- .+.+.||++++||.+
T Consensus 231 hs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~-------~sss~dgt~~~wd~r--- 300 (1113)
T KOG0644|consen 231 HSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR-------ASSSDDGTCRIWDAR--- 300 (1113)
T ss_pred CccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCcc-------ccCCCCCceEecccc---
Confidence 9999999999999999999999999999999999999999999999999999995 377899999999987
Q ss_pred CcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeee
Q 048801 364 YSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV 443 (1715)
Q Consensus 364 ~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~ 443 (1715)
+...++.|.+..... ..-+.++-|..++.-++||+.|+....|.+..
T Consensus 301 ~~~~~y~prp~~~~~------------------~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~--------------- 347 (1113)
T KOG0644|consen 301 LEPRIYVPRPLKFTE------------------KDLVDSILFENNGDRFLTGSRDGEARNHEFEQ--------------- 347 (1113)
T ss_pred ccccccCCCCCCccc------------------ccceeeeeccccccccccccCCcccccchhhH---------------
Confidence 344455544433221 23466677777777888888887777765531
Q ss_pred ecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccC
Q 048801 444 LSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKV 523 (1715)
Q Consensus 444 l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~ 523 (1715)
+..+...+ .+++.+.|
T Consensus 348 l~~~~~~l------------------------------------if~t~ssd---------------------------- 363 (1113)
T KOG0644|consen 348 LAWRSNLL------------------------------------IFVTRSSD---------------------------- 363 (1113)
T ss_pred hhhhccce------------------------------------EEEecccc----------------------------
Confidence 11111111 11111110
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEE
Q 048801 524 PPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIA 603 (1715)
Q Consensus 524 ~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lL 603 (1715)
-..+.+++-.+..+++|++.+|.+++.+.+|...++.|.+||++.++.
T Consensus 364 --------------------------------~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ 411 (1113)
T KOG0644|consen 364 --------------------------------LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIA 411 (1113)
T ss_pred --------------------------------ccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhh
Confidence 013455666788899999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccccccceeecCCCccEEE
Q 048801 604 MSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKYDQFFLGDYRPLIR 683 (1715)
Q Consensus 604 aSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~~~~~~~fs~D~r~L~~ 683 (1715)
.++++||.+.|||+..|.+++.+..+++.+.+.+||+||+.++..+..|+++|+.++.++.++.+++.+||++||++|+.
T Consensus 412 msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ak~dqffl~dyrplir 491 (1113)
T KOG0644|consen 412 MSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKKAKYDQFFLGDYRPLIR 491 (1113)
T ss_pred hhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCccccccccceEeecCcccccc
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeecccccccCcCCCCCcccCCCCCCCCCccchhhhhhcccccceeecCCCCeEEeeeccccCccCCCCCchhhh
Q 048801 684 DSLGNVLDQETQLVPHRRNIQDPLCDSSMIPYEEPYQSMYQQRRLGALGIEWRPSSIKLAIGLDFSLGQDYAMPPLEDLE 763 (1715)
Q Consensus 684 d~~g~vld~~tq~~p~~~~~~~~lvD~~~~p~p~~~q~~~q~r~~g~~~l~~sPdg~~lAvg~~~~l~~~~~~~P~~d~~ 763 (1715)
+.+|.|+|+++|+.|| +++++++||..++|||.+||+++|+|+++++ ++.|+|+
T Consensus 492 dTn~~vldqeTq~~ph-~~~p~~l~ds~~iphpe~yqtl~q~rr~sa~---------------------dh~mp~l---- 545 (1113)
T KOG0644|consen 492 DTNGYVLDQETQLAPH-RNPPDFLCDSDMIPHPEPYQTLFQGRRLSAL---------------------DHLMPPL---- 545 (1113)
T ss_pred cccchhhhhHhhhccc-cCCCCceeccCCCcCCchhhhcccccccchh---------------------hhcCCcc----
Confidence 9999999999999999 5569999999999999999999999997663 6777773
Q ss_pred cccccCCCccccCcccCccccccCCCCcccchhhcccccccccCCcccccccccccchhhhhhhhhhhhccccCccchhh
Q 048801 764 RMMEPVPEFIDPVYWEPENEVISDDNDSEYNIAEECASEAEQGRDSEVEHSRKDGRRRSTRRKHRAEVELKTSSGRRVRK 843 (1715)
Q Consensus 764 ~~i~~~p~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (1715)
+||..|+|||+.+|++++++|+|+...+.+
T Consensus 546 -------~fia~~~~E~e~~Vls~~nds~~~~~~es~------------------------------------------- 575 (1113)
T KOG0644|consen 546 -------EFIATMDWEPEEQVLSDQNDSEYNRSPESL------------------------------------------- 575 (1113)
T ss_pred -------cchhhhccccchhhhhhcccccccCCcccc-------------------------------------------
Confidence 789999999999999999999998532200
Q ss_pred cccccccCCCCCcccchhccchhhhhcccccccccCChhHHHHHHHhhhhhhccCCCCCCCCCCcccCCCCCCccccccc
Q 048801 844 RNLDERDGSASGSNRTKKSKNSQKALKKKSSKAKLLRPQRVAARNARSMFSRITGTSTGEDDSDSEYNSSNSDTVLQDSH 923 (1715)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 923 (1715)
++.+++.+..+|+++++.+.+..|+++++++..+|+|+++|||+..+++|++++.+.+. ++.++..|+..
T Consensus 576 ---seldg~isq~krt~n~r~g~k~s~~~hg~s~ss~~~R~~~Rn~~~~isk~sg~~~~~~s-------g~~e~~~q~~~ 645 (1113)
T KOG0644|consen 576 ---SELDGMISQLKRTQNQRMGAKQSKRKHGLSKSSRPPRAAARNASSDISKISGISLDRKS-------GQVEGVTQMHQ 645 (1113)
T ss_pred ---hhhhhhhhhhhhhhccccccchhhccCCCCccccCCcccccccchhhccCCCccccccc-------cCCccchhhcc
Confidence 55667777777777788888999999999999999999999999999999988876552 22232333222
Q ss_pred cccccchhhhHHHHHhhcccchhhhhhhcccCCCchhhccccccCCcceEEEEEeccccccccccccccccCCccCCCCC
Q 048801 924 VQSKEDDRNLQNMQQQHKREEEQTIVESEFMGKPLELLESQSDTGNRKRLVLKLSLRDHKKALSLEDTRVKGDDMAKLPQ 1003 (1715)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1003 (1715)
++|.+..+++.|....++ + ...-.++.+
T Consensus 646 -------------------------------~~p~eq~~~~~~~~~wR~---e------------------~~vce~leg 673 (1113)
T KOG0644|consen 646 -------------------------------NAPSEQIATLRTLQAWRR---E------------------VVVCEELEG 673 (1113)
T ss_pred -------------------------------CCCHHHHhhhhHHHHhhc---c------------------cCccccccc
Confidence 223333333221111100 0 000011100
Q ss_pred CCCCCCCCCcccccccccCCCCCCCCCCCCcccccccccceeeccCCCccccchhhhcccccccccccccceecccccCc
Q 048801 1004 SSSGPPQGTTERKIDLSLKEPGSSSAGSGIDVGLSQKHNRIVFADGSQDEKYDSQLEESAGDMENKTRWAEVKIRTSKRS 1083 (1715)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1083 (1715)
+.+.. + +- ++ +++...+++=|-.+.|-.|
T Consensus 674 -t~pe~-e-----------d~------~~------------------------------~~dtdev~rng~kngRKrk-- 702 (1113)
T KOG0644|consen 674 -TFPEL-E-----------DE------AM------------------------------AVDTDEVERNGYKNGRKRK-- 702 (1113)
T ss_pred -cCccc-c-----------cc------cc------------------------------ccccchhhhcCCCcccccc--
Confidence 00000 0 00 00 1111111111111111000
Q ss_pred CCCCCCCCCCCCCCCCCCCcCcccccccccCCCCccccCCCCccccccccCCCccccCcchhhhhhhhHHHHhhhccccc
Q 048801 1084 SSSGVLLPPDANFDVHNDSIGDVNRCVKLENGHGKFSSNSETSCYGCVRSCSDKEKFGSDALLDLASVRKEELARHEDIK 1163 (1715)
Q Consensus 1084 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1163 (1715)
+|| ++
T Consensus 703 --------------------------~~l----~~--------------------------------------------- 707 (1113)
T KOG0644|consen 703 --------------------------LEL----RH--------------------------------------------- 707 (1113)
T ss_pred --------------------------hhc----cC---------------------------------------------
Confidence 111 00
Q ss_pred cCCCCCCCCcccCccccccccccccccccCcccccCCCCccceeecccCcCCCCCCCcccccCCccCCCCCCCCCCCCCC
Q 048801 1164 KSSSFNSTPLVDHQQNDDVHKSRNEDVGTNYRDELKENPPLRVRIRTKGILRDTKSPSEQKSSTSVKDLPSAESDPIPMS 1243 (1715)
Q Consensus 1164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1715)
+..+...++++.. ++.+.+. +.+++. |. ..|.
T Consensus 708 --~~Snksd~vtlV~-------------~d~~~~~--------~~~s~a----P~-----------~~ld---------- 739 (1113)
T KOG0644|consen 708 --PLSNKSDSVTLVS-------------QDLADQS--------TCVSRA----PN-----------GGLD---------- 739 (1113)
T ss_pred --ccccccccchhhh-------------hhhhccc--------ceeeeC----Cc-----------cccc----------
Confidence 0011111111110 0111100 111111 10 0000
Q ss_pred cccccccCCCC-CCccccccccCCCCcchhccccccccceecccCcCcccccccccCCCCCCCCccCCCCCCCCcccccc
Q 048801 1244 ESSLCMEGNLM-SEVPEEAEGYGRSSSDQLLNSNLKFKVRDGSKSSYKTRTDIEAFDGGMEDGINHEASGIDSPEAASGS 1322 (1715)
Q Consensus 1244 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1322 (1715)
..+++ +-++. -..-+|.+..|.. .++--.+.+|+.++.+..+..+. ++ +.
T Consensus 740 ~lNDg-fsD~kiD~t~D~se~~gs~--------~Eis~Rndrr~eS~~~esds~SS-a~------sv------------- 790 (1113)
T KOG0644|consen 740 SLNDG-FSDVKIDLTLDCSEDSGSG--------EEISLRNDRRSESNPEESDSLSS-AY------SV------------- 790 (1113)
T ss_pred ccccc-cccccccchhhhhhcCCcc--------cceeeecchhhccCcccccchhh-hh------he-------------
Confidence 01111 00000 0000011111111 11222234555555554333221 10 00
Q ss_pred cccccccceeeeccCCccccccccccCCCccccccccccCCCCccCcCCCC--CccccCCcccccccccccCCCCCCCCC
Q 048801 1323 IRKTRSMKMKIISREPIAANCNFKSKNGHDLVGTSKTVGNSSMEAHDEFFP--EEWIPTSTVKSRPRSTRNRRGDHDGHP 1400 (1715)
Q Consensus 1323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1400 (1715)
...-+|+. .+ ..+..+......++..+++. ++|..+.+... +.|+..- .-|
T Consensus 791 ~l~dgsi~------------------~~---tsrrgRi~k~~~st~a~Lt~e~~~~p~~~~~~s-----~s~s~~~-~~p 843 (1113)
T KOG0644|consen 791 WLADGSIN------------------LQ---TSRRGRITKFCSSTEAELTTELSSPPCSQDKGS-----GSKSHKR-STP 843 (1113)
T ss_pred ecccCCcc------------------cc---ccccccccccCccchhhhhhcccCCCccccccc-----cccCccc-CCC
Confidence 00000110 00 00111112233334566666 44665555522 2222221 113
Q ss_pred ccccCCCCCCCccccccceecccCCCCcCCCCCCCeEEEEccchHHHHHhhccCCCCCCcccCC-CCCcceeEEEEeEeE
Q 048801 1401 CLLSGRKSNFPVRKLSWLMLSEHEEGYRYIPQLGDEVIYSRQGHQEFIESTGSQEVGPWWSING-YISAVETCKVVNLVY 1479 (1715)
Q Consensus 1401 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~yvPq~Gd~V~Yf~QGH~e~~~a~~~~~~~~~~~~~~-~l~~~~~c~v~~i~~ 1479 (1715)
.+++.-|+++...|+|||.+++||+++||||||||||+||||||+|||++++..++ +|+.+.+ ++.+++.|+|+.|.|
T Consensus 844 ~~~~~~~~~~~~~~~sWltls~hee~~ryipQmgDEViyfrQghqeyl~~~~~n~~-~~~~~~p~~~~~v~~~kv~kl~~ 922 (1113)
T KOG0644|consen 844 APLENMKPQQLFEKPSWLTLSIHEEGCRYIPQMGDEVIYFRQGHQEYLEAVRLNNI-ELNNKEPWNKMAVEICKVEKLVY 922 (1113)
T ss_pred ccccccchhhhcCCceeEEeehhhcCCcccccccceeehhhhhhHHHHhhhhhccc-cccccCcccccchhhheeeeeee
Confidence 34888899999999999999999999999999999999999999999999998887 5554432 699999999999999
Q ss_pred EEcCCCCCccceEEEeeeecCCcccCceEEEecCCCCCCCceEEehhhHHHHHhCCCCCCcceEEeecccCCCCCceEEE
Q 048801 1480 ATFPGSGDSCCKITLKFVDPSSSVLGKAFKLTLPELRDFPDFVVEKTLYDAAISRNWTHRDKCQIWWRNANGEGGTWWKG 1559 (1715)
Q Consensus 1480 ~~~~~s~~s~~~~~l~~~~~~~~~~~~~F~v~y~~~~~~~dFlV~~~~y~~a~~~~w~~g~rf~~~~~~e~~~~~~w~~G 1559 (1715)
..+|+|+++||||+|+||||+++++.+.|+++|++|+++|||||+|++|++|+|+||+.||+||+||+++|+.++.||+|
T Consensus 923 ~~y~~~~~s~c~m~l~~idp~s~~~~k~F~ltlpdlv~fpDFlV~rsrYd~AiQrnW~~~d~crvwwrda~~e~g~WWeG 1002 (1113)
T KOG0644|consen 923 ITYPGSGDSCCKMKLAVIDPASKLMDKSFKLTLPDLVTFPDFLVERSRYDAAIQRNWTCRDKCRVWWRDAGEEDGAWWEG 1002 (1113)
T ss_pred eeccCCCcchheeeeeeecchhhhhhccceeecccccCcchhhhhhhhHHHHHhhccccccceeEEEccCCCcCCceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccCCCCCCCCCCceeEEEECCCCCCCCCCCccCCCCCCCCCCCCChHHHHHHhhhHHHhhhhccccchhhhhHHH
Q 048801 1560 RITKSQAKSEEFPNSPWDRYMVEYKTGDSHLHSPWEMHDPNVMWEHPEIDSESRDKLLSSFNKLEQSVSRKQDYYGIQRL 1639 (1715)
Q Consensus 1560 tI~~~~~~~p~~P~S~w~~l~V~wd~~~~~~~SpWeie~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 1639 (1715)
||.++++++|+||+|||+||.|+||+++++.|||||+++.+..
T Consensus 1003 ~ils~~pksp~fpdSpwery~v~~~~~e~~~~spwe~~~i~de------------------------------------- 1045 (1113)
T KOG0644|consen 1003 RILSVKPKSPDFPDSPWERYIVRYDNTETELHSPWEMEPIPDE------------------------------------- 1045 (1113)
T ss_pred eeeeccCCCCCCCCCcceeEEEEecCCcccccCccccCCCccc-------------------------------------
Confidence 9999999999999999999999999999999999999975521
Q ss_pred HHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1640 NEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1640 ~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
|+++||+|++|++|+.||||+|||.++|+.+||..|+.||++||..+..+.-|+..|..||++++.++
T Consensus 1046 --------~~~~fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tlpk~ 1113 (1113)
T KOG0644|consen 1046 --------VDNRFPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTLPKL 1113 (1113)
T ss_pred --------cCCCCCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhhccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999998764
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.4e-47 Score=425.28 Aligned_cols=360 Identities=26% Similarity=0.430 Sum_probs=308.1
Q ss_pred eeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 234 k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
++...+.||.++|.|++|+|+|..||||+.|.++++||+.|..++.++++|...|.|++|+|||+.||+|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCce-EEEeCCCCCeEEEEecCCCC--cceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCC
Q 048801 314 LPDGLPI-SVLRGHTGAVTAIAFSPRPS--AIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPS 390 (1715)
Q Consensus 314 l~tg~~l-~~L~gH~~~VtsLafSPdg~--~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~ 390 (1715)
..+|+++ ..|.+|...|++|+|.|-.- ...+|++++.||.|+|||+..+.++..+
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l---------------------- 243 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL---------------------- 243 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe----------------------
Confidence 9998765 67899999999999987431 1238999999999999999887765443
Q ss_pred CCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccc
Q 048801 391 SSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDA 470 (1715)
Q Consensus 391 ~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~ 470 (1715)
.+|...|+|+.|--+| ++.+|+.|++|++|+...+ .+...+.+|...|+.++.+.+... +.+..+.
T Consensus 244 ---sgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG---------~~~r~lkGHahwvN~lalsTdy~L-Rtgaf~~ 309 (480)
T KOG0271|consen 244 ---SGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDG---------KLCRELKGHAHWVNHLALSTDYVL-RTGAFDH 309 (480)
T ss_pred ---ccCccceEEEEEcCCc-eEEecCCCceEEEEEccch---------hHHHhhcccchheeeeeccchhhh-hcccccc
Confidence 4578889999997665 8999999999999999875 357889999999999999865311 1111000
Q ss_pred c-cccccc---------cc-cCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcc
Q 048801 471 F-KEENVP---------KF-KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQ 539 (1715)
Q Consensus 471 ~-~~~~~~---------~~-~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~ 539 (1715)
. ...... .. ...-..+..+++|+.|+++.+|+... ...++.
T Consensus 310 t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~----------------------------~kkpi~ 361 (480)
T KOG0271|consen 310 TGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFK----------------------------SKKPIT 361 (480)
T ss_pred ccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccc----------------------------cccchh
Confidence 0 000000 00 00012357899999999999997652 124667
Q ss_pred cccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC
Q 048801 540 RLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 540 ~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t 619 (1715)
++.+|..-|+.+.||||+++||+++.|..|++|+..+|+.+.+|+||-+.|+.++|+. |.++|++|+.|.+++||++.+
T Consensus 362 rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 362 RMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred hhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeee
Confidence 8889999999999999999999999999999999999999999999999999999999 889999999999999999999
Q ss_pred CceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 620 GTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 620 gk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
.+....+.+|...|.++.|+|||..+++|+.|..+++|.
T Consensus 441 kKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 441 KKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999994
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.3e-40 Score=368.57 Aligned_cols=323 Identities=21% Similarity=0.337 Sum_probs=282.6
Q ss_pred cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEE
Q 048801 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVr 355 (1715)
++...+.||.++|.|+.|+|+|..||+|+.|.++++||+.+..++.+.++|...|.|++|+||+. .|++|+.||+|+
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk---~iASG~~dg~I~ 182 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGK---KIASGSKDGSIR 182 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcc---hhhccccCCeEE
Confidence 45567889999999999999999999999999999999999999999999999999999999998 899999999999
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-----CCCeEEEecCCCeEEEEeCCCCC
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-----NGTVFVTGSSDTFARVWSACKSS 430 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-----dG~~LatGs~DG~IrVWDl~t~~ 430 (1715)
+||..+|+++-. .+.+|...|++++|.| ..++||+++.||.|+|||+..+
T Consensus 183 lwdpktg~~~g~------------------------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~- 237 (480)
T KOG0271|consen 183 LWDPKTGQQIGR------------------------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG- 237 (480)
T ss_pred EecCCCCCcccc------------------------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc-
Confidence 999998875422 2456788999999976 6689999999999999999764
Q ss_pred ccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCc
Q 048801 431 VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHG 510 (1715)
Q Consensus 431 ~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~ 510 (1715)
.++..+.+|+.+|+|+.|-..+ +|++|+.|++|++|+...+.
T Consensus 238 --------~~~~~lsgHT~~VTCvrwGG~g---------------------------liySgS~DrtIkvw~a~dG~--- 279 (480)
T KOG0271|consen 238 --------TCVRTLSGHTASVTCVRWGGEG---------------------------LIYSGSQDRTIKVWRALDGK--- 279 (480)
T ss_pred --------eEEEEeccCccceEEEEEcCCc---------------------------eEEecCCCceEEEEEccchh---
Confidence 5688999999999999998764 99999999999999987643
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC-----------CC-----------------------
Q 048801 511 KVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS-----------LD----------------------- 556 (1715)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS-----------PD----------------------- 556 (1715)
....+.+|...|+.+++| |.
T Consensus 280 --------------------------~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~ 333 (480)
T KOG0271|consen 280 --------------------------LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLK 333 (480)
T ss_pred --------------------------HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhc
Confidence 344455666666666655 22
Q ss_pred --CCEEEEEecCCeEEEEECCC-CceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceE
Q 048801 557 --NRFVLAAIMDCRICVWNAVD-GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKL 633 (1715)
Q Consensus 557 --G~~LaTgs~DGtI~IWDl~s-g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V 633 (1715)
+..|++|+.|+++.+|+... .+++..+.+|..-|+.+.||| +++++|+++.|..|++|+..+|+.+.+|.+|-+.|
T Consensus 334 ~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~V 412 (480)
T KOG0271|consen 334 DSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAV 412 (480)
T ss_pred cCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCcchhhhhhhcccee
Confidence 34599999999999999755 458889999999999999999 89999999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCccccccc------cceeecCCCccEEEcCCCCeee
Q 048801 634 VDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAK------YDQFFLGDYRPLIRDSLGNVLD 691 (1715)
Q Consensus 634 ~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~~~------~~~~fs~D~r~L~~d~~g~vld 691 (1715)
+.++||.|.++|++|+.|.+|.+|++.+.+...+.+ |.+-|+|||..++-.....++.
T Consensus 413 YqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~ 476 (480)
T KOG0271|consen 413 YQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLR 476 (480)
T ss_pred EEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEE
Confidence 999999999999999999999999999988776555 5667999999888766665553
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.4e-37 Score=370.46 Aligned_cols=387 Identities=21% Similarity=0.316 Sum_probs=313.0
Q ss_pred CccccccceeEEEEcC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCC--CEEEE
Q 048801 226 PSTMVQKMQNIKKLRG-HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNN--TLVAS 302 (1715)
Q Consensus 226 ~~~~~~~~k~l~~L~G-H~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg--~lLAS 302 (1715)
..+.+++.+.++.+++ |.++|.-++|+|.|..|++|+.||.|+|||+..+.+.+.|+||.+.|.++.|.|+- .+|++
T Consensus 87 rv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~s 166 (775)
T KOG0319|consen 87 RVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLAS 166 (775)
T ss_pred EEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheee
Confidence 3455667788888888 99999999999999999999999999999999999999999999999999999975 46899
Q ss_pred EeCCCeeEEEECCCCCc-eEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCC-------
Q 048801 303 ASNDFVIRVWRLPDGLP-ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPP------- 374 (1715)
Q Consensus 303 GS~DGtIrVWDl~tg~~-l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~------- 374 (1715)
|..|++|++||+.+... +.++..|.+.|++++|++++. .+++++.|..|.|||+.+-+....+......
T Consensus 167 g~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~---~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~ 243 (775)
T KOG0319|consen 167 GATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL---ELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLR 243 (775)
T ss_pred cCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc---eEEEeccCcEEEEeehhhhhhhheechhhheeeEEEec
Confidence 99999999999996654 888899999999999999976 6788888888888887443322211110000
Q ss_pred --------------------------------------CCcc-----------------------------------Ccc
Q 048801 375 --------------------------------------DAIT-----------------------------------GKS 381 (1715)
Q Consensus 375 --------------------------------------~~i~-----------------------------------g~~ 381 (1715)
..+. |..
T Consensus 244 ~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~n 323 (775)
T KOG0319|consen 244 EELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYN 323 (775)
T ss_pred hhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCc
Confidence 0000 000
Q ss_pred C---------------CC-----------CCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCC
Q 048801 382 N---------------VP-----------SNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSE 435 (1715)
Q Consensus 382 ~---------------~~-----------~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~ 435 (1715)
. +. .....+....+|...|.+++...+|.+|++|+.|.++++|.+..+.
T Consensus 324 dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~----- 398 (775)
T KOG0319|consen 324 DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNC----- 398 (775)
T ss_pred hhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCc-----
Confidence 0 00 0000122335667778888866788899999999999999884432
Q ss_pred CCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccc
Q 048801 436 QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRW 515 (1715)
Q Consensus 436 ~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~ 515 (1715)
....++....+|++.|.+++++..+ ...|+++|.|+++++|++...+...
T Consensus 399 ~~~~~~a~~~gH~~svgava~~~~~-------------------------asffvsvS~D~tlK~W~l~~s~~~~----- 448 (775)
T KOG0319|consen 399 SKSLCVAQANGHTNSVGAVAGSKLG-------------------------ASFFVSVSQDCTLKLWDLPKSKETA----- 448 (775)
T ss_pred chhhhhhhhcccccccceeeecccC-------------------------ccEEEEecCCceEEEecCCCccccc-----
Confidence 1234566778999999999997655 4799999999999999987411000
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEE
Q 048801 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDV 595 (1715)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLaf 595 (1715)
. +..-........|...|+|++++|+.++||||+.|.+.+||++..++.+.+|.||...|+++.|
T Consensus 449 --------------~-~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~F 513 (775)
T KOG0319|consen 449 --------------F-PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSF 513 (775)
T ss_pred --------------c-cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEe
Confidence 0 1111222345679999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 048801 596 HPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 596 SP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k 666 (1715)
+| ..++++|++.|++|+||.+.++.|+++|.+|...|..+.|-.+|+.|++++.||-|+||++.++++..
T Consensus 514 s~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~ 583 (775)
T KOG0319|consen 514 SK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEM 583 (775)
T ss_pred cc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhh
Confidence 99 66899999999999999999999999999999999999999999999999999999999999999875
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.8e-38 Score=357.41 Aligned_cols=285 Identities=26% Similarity=0.438 Sum_probs=264.9
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCC--CCEEEEEeCCCeeEEEECCC
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN--NTLVASASNDFVIRVWRLPD 316 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpD--g~lLASGS~DGtIrVWDl~t 316 (1715)
-.|-+.+|..+.|+.|+..|||||.+|.++||+..+...+.+|.||...|.++.|+|. +.-||||+.||+|++|++.+
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 3477889999999999999999999999999999999999999999999999999996 67999999999999999999
Q ss_pred CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCC
Q 048801 317 GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396 (1715)
Q Consensus 317 g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h 396 (1715)
..++..|.+|...|..++|+|+|. +|+|++.|.+-++||+.++..+. ...+|
T Consensus 251 e~~l~~l~gH~~RVs~VafHPsG~---~L~TasfD~tWRlWD~~tk~ElL-------------------------~QEGH 302 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFHPSGK---FLGTASFDSTWRLWDLETKSELL-------------------------LQEGH 302 (459)
T ss_pred CcchhhhhcchhhheeeeecCCCc---eeeecccccchhhcccccchhhH-------------------------hhccc
Confidence 999999999999999999999998 89999999999999999876432 23567
Q ss_pred CcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccc
Q 048801 397 SHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENV 476 (1715)
Q Consensus 397 ~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~ 476 (1715)
...|.+|+|.+||.++++|+.|..-+|||++++ .++..+.+|...|.+|+|+|+|
T Consensus 303 s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg---------r~im~L~gH~k~I~~V~fsPNG---------------- 357 (459)
T KOG0272|consen 303 SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG---------RCIMFLAGHIKEILSVAFSPNG---------------- 357 (459)
T ss_pred ccccceeEecCCCceeeccCccchhheeecccC---------cEEEEecccccceeeEeECCCc----------------
Confidence 888999999999999999999999999999986 4588999999999999999998
Q ss_pred ccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-
Q 048801 477 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL- 555 (1715)
Q Consensus 477 ~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP- 555 (1715)
-.|+||+.|++++|||++..+ ....+.+|..-|+.|.|+|
T Consensus 358 ----------y~lATgs~Dnt~kVWDLR~r~-----------------------------~ly~ipAH~nlVS~Vk~~p~ 398 (459)
T KOG0272|consen 358 ----------YHLATGSSDNTCKVWDLRMRS-----------------------------ELYTIPAHSNLVSQVKYSPQ 398 (459)
T ss_pred ----------eEEeecCCCCcEEEeeecccc-----------------------------cceecccccchhhheEeccc
Confidence 699999999999999998643 2445778999999999998
Q ss_pred CCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 556 DNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 556 DG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
.|.+|+|++.|++++||...++.++++|.||.+.|.+++.++ ++.+++|++.|.++++|.
T Consensus 399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP-DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc-CCceEEEeccCceeeecc
Confidence 889999999999999999999999999999999999999999 889999999999999995
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.9e-37 Score=353.19 Aligned_cols=287 Identities=23% Similarity=0.298 Sum_probs=263.7
Q ss_pred cCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCC
Q 048801 282 RGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY 361 (1715)
Q Consensus 282 ~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~t 361 (1715)
.|.+.+|..+.||.|+..|||||.+|.++||+..++..+.+|.||...|.++.|+|.... ..|++|+.||++++|++.+
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~-~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSD-LNLATASADGTVKLWKLSQ 250 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCc-cceeeeccCCceeeeccCC
Confidence 356789999999999999999999999999999999999999999999999999998422 2799999999999999876
Q ss_pred CCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceee
Q 048801 362 SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHEL 441 (1715)
Q Consensus 362 g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l 441 (1715)
...+. ...+|...|..++|+|+|++|+|++.|.+-++||+.++. ++
T Consensus 251 e~~l~-------------------------~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~---------El 296 (459)
T KOG0272|consen 251 ETPLQ-------------------------DLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS---------EL 296 (459)
T ss_pred Ccchh-------------------------hhhcchhhheeeeecCCCceeeecccccchhhcccccch---------hh
Confidence 54332 234578889999999999999999999999999998853 45
Q ss_pred eeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccc
Q 048801 442 DVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHL 521 (1715)
Q Consensus 442 ~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l 521 (1715)
....||...|.+++|.++| ..++||+.|..-+|||+++++
T Consensus 297 L~QEGHs~~v~~iaf~~DG--------------------------SL~~tGGlD~~~RvWDlRtgr-------------- 336 (459)
T KOG0272|consen 297 LLQEGHSKGVFSIAFQPDG--------------------------SLAATGGLDSLGRVWDLRTGR-------------- 336 (459)
T ss_pred HhhcccccccceeEecCCC--------------------------ceeeccCccchhheeecccCc--------------
Confidence 6678999999999999998 799999999999999999855
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCc
Q 048801 522 KVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPR 601 (1715)
Q Consensus 522 ~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~ 601 (1715)
.+..+.+|...|..|+|+|+|..||||+.|++++|||++....+.++.+|.+-|+.|.|+|..+.
T Consensus 337 ---------------~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~ 401 (459)
T KOG0272|consen 337 ---------------CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGY 401 (459)
T ss_pred ---------------EEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCe
Confidence 44557789999999999999999999999999999999999999999999999999999998899
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 602 IAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 602 lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
+|+|+++|++++||...++.+++++.+|.+.|.++.+++||.+|++++.|.++++|.
T Consensus 402 fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 402 FLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999999999999999999999999999999999999999999999995
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.2e-35 Score=321.79 Aligned_cols=292 Identities=23% Similarity=0.394 Sum_probs=262.9
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
++..++|+||.+.|+++.|++|.++|+++|.||.+.|||.-|...++.+.-....|..++|+|.|+++|+|+-|+...||
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence 45568899999999999999999999999999999999999998888888889999999999999999999999999999
Q ss_pred ECCCC------CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 313 RLPDG------LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 313 Dl~tg------~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
++.+. ...+.+.+|++.+.|+.|.+++ .|++++.|.++.+||+.+++.+..+
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~----~ilT~SGD~TCalWDie~g~~~~~f------------------ 182 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN----HILTGSGDMTCALWDIETGQQTQVF------------------ 182 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCCC----ceEecCCCceEEEEEcccceEEEEe------------------
Confidence 99854 3456789999999999999976 6999999999999999999865543
Q ss_pred CCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccc
Q 048801 387 NGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~ 465 (1715)
.+|...|.+++++| +++.|++|+.|+..+|||++.+ .+.+.+.+|...|++|.|.|+|
T Consensus 183 -------~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~---------~c~qtF~ghesDINsv~ffP~G----- 241 (343)
T KOG0286|consen 183 -------HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG---------QCVQTFEGHESDINSVRFFPSG----- 241 (343)
T ss_pred -------cCCcccEEEEecCCCCCCeEEecccccceeeeeccCc---------ceeEeecccccccceEEEccCC-----
Confidence 35788899999999 9999999999999999999875 4688999999999999999998
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~ 545 (1715)
.-|++|+.|+++++||++..+.+..+. -....
T Consensus 242 ---------------------~afatGSDD~tcRlyDlRaD~~~a~ys---------------------------~~~~~ 273 (343)
T KOG0286|consen 242 ---------------------DAFATGSDDATCRLYDLRADQELAVYS---------------------------HDSII 273 (343)
T ss_pred ---------------------CeeeecCCCceeEEEeecCCcEEeeec---------------------------cCccc
Confidence 689999999999999999754322211 11234
Q ss_pred CCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 546 RGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
.+|++++||..|++|++|..|.++.|||.-.++.+..|.||.+.|.+|..+| ++.-|+||+.|.+|+||.
T Consensus 274 ~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 274 CGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP-DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC-CCcEEEecchhHheeecC
Confidence 5799999999999999999999999999999999999999999999999999 889999999999999994
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.5e-34 Score=341.86 Aligned_cols=518 Identities=19% Similarity=0.286 Sum_probs=372.8
Q ss_pred CCceeeeeeccccCcccccC-CCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 048801 192 ADQVHGLSLREIGGGFKKHH-RAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIW 270 (1715)
Q Consensus 192 ~d~V~~ls~~~~g~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIW 270 (1715)
...|.++.|++.|..++.+. +...++....... ..+..+.+.+++.||-..|+++.|+.|.++|++||.|.+++||
T Consensus 96 k~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~---~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~ 172 (893)
T KOG0291|consen 96 KRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIK---NEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLF 172 (893)
T ss_pred cCccceEEECCCCcEEEEEecceeEEEecCcchh---cccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEE
Confidence 45677888888886665432 1111221111111 1345677889999999999999999999999999999999999
Q ss_pred eCCCCcE--EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC-----------------------CCc-----e
Q 048801 271 SMETAFC--LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD-----------------------GLP-----I 320 (1715)
Q Consensus 271 Dl~tgk~--l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t-----------------------g~~-----l 320 (1715)
.+...+- ...+.||.+.|.++-|..+...|++.+.||.+.+|.... ++. .
T Consensus 173 ~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~ 252 (893)
T KOG0291|consen 173 GVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIF 252 (893)
T ss_pred EeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceE
Confidence 9986655 567889999999999999999999999999999997751 111 0
Q ss_pred ------EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCC-----ccCccCCC-----
Q 048801 321 ------SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDA-----ITGKSNVP----- 384 (1715)
Q Consensus 321 ------~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~-----i~g~~~~~----- 384 (1715)
.-+......|++.+|++... .|++|-..|...+|.+..-.++..+......-. ..|.+.+.
T Consensus 253 ~~k~~k~~ln~~~~kvtaa~fH~~t~---~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~kl 329 (893)
T KOG0291|consen 253 WYKTKKHYLNQNSSKVTAAAFHKGTN---LLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKL 329 (893)
T ss_pred EEEEEeeeecccccceeeeeccCCce---EEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCcc
Confidence 01122336899999999876 899999999999999987776665544322110 01211111
Q ss_pred --------CCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEE
Q 048801 385 --------SNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF 456 (1715)
Q Consensus 385 --------~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLaf 456 (1715)
..........+|...++|++++|||+++|+|+.||.|+|||...+ -++.++..|+..|+.+.|
T Consensus 330 gQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg---------fC~vTFteHts~Vt~v~f 400 (893)
T KOG0291|consen 330 GQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG---------FCFVTFTEHTSGVTAVQF 400 (893)
T ss_pred ceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc---------eEEEEeccCCCceEEEEE
Confidence 111224455778899999999999999999999999999999764 568899999999999999
Q ss_pred ccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCC
Q 048801 457 SGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGG 536 (1715)
Q Consensus 457 spdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~ 536 (1715)
+..+ +.+++.+-||+|+.||+...+....+
T Consensus 401 ~~~g--------------------------~~llssSLDGtVRAwDlkRYrNfRTf------------------------ 430 (893)
T KOG0291|consen 401 TARG--------------------------NVLLSSSLDGTVRAWDLKRYRNFRTF------------------------ 430 (893)
T ss_pred EecC--------------------------CEEEEeecCCeEEeeeecccceeeee------------------------
Confidence 9876 79999999999999999864422111
Q ss_pred CcccccCCCCCeeEEEeCCCCCEEEEEecCC-eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEE
Q 048801 537 PRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVW 615 (1715)
Q Consensus 537 ~~~~l~~h~~~VtslafSPDG~~LaTgs~DG-tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VW 615 (1715)
..+.+....|++..|.|.++++|+.|. .|.||++.+|+++-.|.||.++|.+++|+| .+..|++|++|.+|++|
T Consensus 431 ----t~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW 505 (893)
T KOG0291|consen 431 ----TSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIW 505 (893)
T ss_pred ----cCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEE
Confidence 112234578999999999999999886 699999999999999999999999999999 77899999999999999
Q ss_pred ECCCC-ceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc------c--------------------cc
Q 048801 616 DIWEG-TPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ------K--------------------DA 668 (1715)
Q Consensus 616 Dl~tg-k~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~------k--------------------~~ 668 (1715)
|+-.. ..+.++. +...+..++|+|||+.||++.-||+|.+||+..+... + ..
T Consensus 506 ~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~ 584 (893)
T KOG0291|consen 506 DIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKT 584 (893)
T ss_pred EeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCc
Confidence 98654 3455555 5668999999999999999999999999998765332 0 11
Q ss_pred ccceeecCCCccEEEcCCCCeee---c-------cccccc-----------CcCCCCCc----ccCCC--------CCCC
Q 048801 669 KYDQFFLGDYRPLIRDSLGNVLD---Q-------ETQLVP-----------HRRNIQDP----LCDSS--------MIPY 715 (1715)
Q Consensus 669 ~~~~~fs~D~r~L~~d~~g~vld---~-------~tq~~p-----------~~~~~~~~----lvD~~--------~~p~ 715 (1715)
.....+++||..|+.....+.+. . -.+... +.+.+-.+ |+|.. .++.
T Consensus 585 Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~l 664 (893)
T KOG0291|consen 585 FTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIAL 664 (893)
T ss_pred eEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccC
Confidence 12346888998877665544211 0 111110 01111111 22220 0011
Q ss_pred CCccchhhhhh----cccccceeecCCCCeEEeeec-----cccCccCCCCCchhhhcccccCCCccccCcccCccc
Q 048801 716 EEPYQSMYQQR----RLGALGIEWRPSSIKLAIGLD-----FSLGQDYAMPPLEDLERMMEPVPEFIDPVYWEPENE 783 (1715)
Q Consensus 716 p~~~q~~~q~r----~~g~~~l~~sPdg~~lAvg~~-----~~l~~~~~~~P~~d~~~~i~~~p~~i~~~~~~p~~~ 783 (1715)
|..-..-.-.| +.-...+.|+|.|+-+|..++ ++++..+.+.| .||| ++.-|+.+..+-|++|.-
T Consensus 665 pG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEGl~IYsld~~~~FDP-f~LD--~~vTPe~v~~al~~qey~ 738 (893)
T KOG0291|consen 665 PGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEGLLIYSLDTTILFDP-FDLD--VDVTPESVREALREQEYL 738 (893)
T ss_pred CccccCCccccccCceEEEEEEEECCCcCeeeeecccceEEEecCCceEEcc-cccc--cccCHHHHHHHHhcchHH
Confidence 11110000111 233556889999999999854 45556666777 4777 788888888887877743
No 9
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-34 Score=347.59 Aligned_cols=388 Identities=20% Similarity=0.259 Sum_probs=316.0
Q ss_pred CCCCCCCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCC--EEEEEeCC
Q 048801 187 WPHMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGR--FVITGSDD 264 (1715)
Q Consensus 187 ~~~~~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~--~LaTGS~D 264 (1715)
|-..|...+..+.|.+.|+.++ .+..+...+.|.+....+.+.|+||.+.|.++.|+|+-. .|++|..|
T Consensus 100 wKa~He~Pvi~ma~~~~g~LlA---------tggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D 170 (775)
T KOG0319|consen 100 WKAIHEAPVITMAFDPTGTLLA---------TGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATD 170 (775)
T ss_pred HhhccCCCeEEEEEcCCCceEE---------eccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCC
Confidence 3334667777888877764333 344556677888999999999999999999999999765 48999999
Q ss_pred CcEEEEeCCCCc-EEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCce-----------------------
Q 048801 265 RLVKIWSMETAF-CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPI----------------------- 320 (1715)
Q Consensus 265 GtIrIWDl~tgk-~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l----------------------- 320 (1715)
++|++||+.+.. ++.++..|.+.|++++|++|+..+++++.|..|.|||+.+.+..
T Consensus 171 ~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~ 250 (775)
T KOG0319|consen 171 GTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKG 250 (775)
T ss_pred ceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcc
Confidence 999999998654 48888999999999999999999999999999999996320000
Q ss_pred --------------------------------------------------------------------------------
Q 048801 321 -------------------------------------------------------------------------------- 320 (1715)
Q Consensus 321 -------------------------------------------------------------------------------- 320 (1715)
T Consensus 251 ~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~ 330 (775)
T KOG0319|consen 251 EYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMK 330 (775)
T ss_pred eEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeee
Confidence
Q ss_pred ----------------------------EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCC
Q 048801 321 ----------------------------SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPK 372 (1715)
Q Consensus 321 ----------------------------~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~ 372 (1715)
..+.||+..|.++.....|. +|++|+.|.++++|.++.+....
T Consensus 331 ~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~---llat~sKD~svilWr~~~~~~~~------ 401 (775)
T KOG0319|consen 331 FLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGD---LLATGSKDKSVILWRLNNNCSKS------ 401 (775)
T ss_pred ecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCc---EEEEecCCceEEEEEecCCcchh------
Confidence 12345666677777444443 78899999999999884433211
Q ss_pred CCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCe
Q 048801 373 PPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDV 451 (1715)
Q Consensus 373 ~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V 451 (1715)
.......+|.+.|.+++++..+ .+|++++.|+++++|++...+................|...|
T Consensus 402 ---------------~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdI 466 (775)
T KOG0319|consen 402 ---------------LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDI 466 (775)
T ss_pred ---------------hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccc
Confidence 1122335678889999998766 689999999999999998733222211112223456799999
Q ss_pred eEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCC
Q 048801 452 NYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQ 531 (1715)
Q Consensus 452 ~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~ 531 (1715)
+|++++|+. ..|+|||.|.+.+||++...
T Consensus 467 N~Vaia~nd--------------------------kLiAT~SqDktaKiW~le~~------------------------- 495 (775)
T KOG0319|consen 467 NCVAIAPND--------------------------KLIATGSQDKTAKIWDLEQL------------------------- 495 (775)
T ss_pred cceEecCCC--------------------------ceEEecccccceeeecccCc-------------------------
Confidence 999999985 79999999999999998742
Q ss_pred CCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCc
Q 048801 532 PPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGR 611 (1715)
Q Consensus 532 ~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGt 611 (1715)
.....+.+|..+|.++.|++..+.|+|++.|++|+||.+.+..++++|.||...|..+.|-. ++..|+|++.||.
T Consensus 496 ----~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~-~~~qliS~~adGl 570 (775)
T KOG0319|consen 496 ----RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR-NGKQLISAGADGL 570 (775)
T ss_pred ----eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee-CCcEEEeccCCCc
Confidence 23456789999999999999999999999999999999999999999999999999999988 7788889999999
Q ss_pred EEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 048801 612 TIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 612 I~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe 663 (1715)
|+||++.+++|+.++..|...|++++.+|.+..+++|+.||.|.+|.-.+.+
T Consensus 571 iKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 571 IKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred EEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcHH
Confidence 9999999999999999999999999999999999999999999999865543
No 10
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.2e-33 Score=321.52 Aligned_cols=327 Identities=24% Similarity=0.455 Sum_probs=280.4
Q ss_pred EEEcCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCC--Cc--EEEEec------C----CCCCeEEEEECCCCCEEE
Q 048801 237 KKLRGHRDAVYCAIFDRSGR-FVITGSDDRLVKIWSMET--AF--CLASCR------G----HEGDITDLAVSSNNTLVA 301 (1715)
Q Consensus 237 ~~L~GH~~~Vt~VafSpDG~-~LaTGS~DGtIrIWDl~t--gk--~l~tL~------g----Hs~~VtsLafSpDg~lLA 301 (1715)
+.+. |...|.+++|.|-.. .+++|+.|-+.++|++.. .. ....|+ + ....|++++|+.+|.+||
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 3444 999999999999665 899999999999999864 11 111111 1 245899999999999999
Q ss_pred EEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCcc
Q 048801 302 SASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKS 381 (1715)
Q Consensus 302 SGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~ 381 (1715)
+|+.||.++||+. +|..+.+|..|.++|.+|.|+..+. +|++++.|+++.+||..++.....+.+
T Consensus 252 tG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~---yilS~~vD~ttilwd~~~g~~~q~f~~----------- 316 (524)
T KOG0273|consen 252 TGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGT---YILSGGVDGTTILWDAHTGTVKQQFEF----------- 316 (524)
T ss_pred EeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCC---EEEeccCCccEEEEeccCceEEEeeee-----------
Confidence 9999999999995 6888999999999999999999998 999999999999999988876555433
Q ss_pred CCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcc
Q 048801 382 NVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAV 461 (1715)
Q Consensus 382 ~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~ 461 (1715)
|...-..+.|-.+ ..|++.+.||.|+|+.+... .++.++.+|.+.|.++.|.|.+
T Consensus 317 --------------~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~---------~P~~t~~GH~g~V~alk~n~tg- 371 (524)
T KOG0273|consen 317 --------------HSAPALDVDWQSN-DEFATSSTDGCIHVCKVGED---------RPVKTFIGHHGEVNALKWNPTG- 371 (524)
T ss_pred --------------ccCCccceEEecC-ceEeecCCCceEEEEEecCC---------CcceeeecccCceEEEEECCCC-
Confidence 2222355677644 46888999999999998642 4577889999999999999987
Q ss_pred cccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccc
Q 048801 462 ASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRL 541 (1715)
Q Consensus 462 as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l 541 (1715)
.+|++++.|++++||.... ......+
T Consensus 372 -------------------------~LLaS~SdD~TlkiWs~~~-----------------------------~~~~~~l 397 (524)
T KOG0273|consen 372 -------------------------SLLASCSDDGTLKIWSMGQ-----------------------------SNSVHDL 397 (524)
T ss_pred -------------------------ceEEEecCCCeeEeeecCC-----------------------------Ccchhhh
Confidence 7999999999999998764 2344567
Q ss_pred cCCCCCeeEEEeCCCC---------CEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 048801 542 LPTPRGVNMIVWSLDN---------RFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRT 612 (1715)
Q Consensus 542 ~~h~~~VtslafSPDG---------~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI 612 (1715)
..|...|..+.|+|.| ..|++++.|++|++||+..|.++++|..|..+|++|+|+| +++++|+|+.||.|
T Consensus 398 ~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V 476 (524)
T KOG0273|consen 398 QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCV 476 (524)
T ss_pred hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecCCCCee
Confidence 7888899999999964 4799999999999999999999999999999999999999 88999999999999
Q ss_pred EEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 613 IVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 613 ~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
.||++.+++.++.+. ..+.|..++|+.+|.+|.++-.||.+.+.|+.
T Consensus 477 ~iws~~~~~l~~s~~-~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 477 HIWSTKTGKLVKSYQ-GTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EeccccchheeEeec-CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999998 56679999999999999999999999999873
No 11
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.7e-32 Score=314.41 Aligned_cols=387 Identities=17% Similarity=0.210 Sum_probs=306.5
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeE
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGR-FVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIR 310 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~-~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIr 310 (1715)
+..-+..|.||...|+++.|-|... +++|||+|++|.+|+-...+...+++.|..-|.|+.|+|||.++|+++.||.|.
T Consensus 136 SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~ 215 (603)
T KOG0318|consen 136 SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIY 215 (603)
T ss_pred CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEE
Confidence 4556777899999999999998765 699999999999999887788889999999999999999999999999999999
Q ss_pred EEECCCCCceEEEe---CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCc----------
Q 048801 311 VWRLPDGLPISVLR---GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAI---------- 377 (1715)
Q Consensus 311 VWDl~tg~~l~~L~---gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i---------- 377 (1715)
|||-.+|+.+..|. +|.+.|.+|+|+||+. .|++++.|.+++|||+.+..++.++.+.......
T Consensus 216 iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~---~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~ 292 (603)
T KOG0318|consen 216 IYDGKTGEKVGELEDSDAHKGSIFALSWSPDST---QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDH 292 (603)
T ss_pred EEcCCCccEEEEecCCCCccccEEEEEECCCCc---eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCe
Confidence 99999999999998 8999999999999998 8999999999999999999988887665542110
Q ss_pred ------cCccC--CCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC
Q 048801 378 ------TGKSN--VPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN 449 (1715)
Q Consensus 378 ------~g~~~--~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~ 449 (1715)
.|... .+....+.....+|...|++++.++++.+|.+|+.||.|.-|+..++... ...-.+|..
T Consensus 293 lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~--------~~~g~~h~n 364 (603)
T KOG0318|consen 293 LITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD--------RLAGKGHTN 364 (603)
T ss_pred EEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc--------ccccccccc
Confidence 01111 11222345667789999999999999999999999999999999876421 111267999
Q ss_pred CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCC
Q 048801 450 DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLP 529 (1715)
Q Consensus 450 ~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~ 529 (1715)
.|.+++.+.. ..+++++.|.++++.++........ ..+.+..+|..
T Consensus 365 qI~~~~~~~~---------------------------~~~~t~g~Dd~l~~~~~~~~~~t~~-------~~~~lg~QP~~ 410 (603)
T KOG0318|consen 365 QIKGMAASES---------------------------GELFTIGWDDTLRVISLKDNGYTKS-------EVVKLGSQPKG 410 (603)
T ss_pred eEEEEeecCC---------------------------CcEEEEecCCeEEEEecccCccccc-------ceeecCCCcee
Confidence 9999988764 4788999999999987754321111 00111111111
Q ss_pred CCCCCC-----------------CCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceE--EEEecCCCCe
Q 048801 530 PQPPRG-----------------GPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLV--HSLTGHSASS 590 (1715)
Q Consensus 530 ~~~~~g-----------------~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l--~tL~gH~~~V 590 (1715)
...... ..............+++++|++..+++|+.|+.|+||.+..+.+. ..+..|.++|
T Consensus 411 lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~i 490 (603)
T KOG0318|consen 411 LAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAI 490 (603)
T ss_pred EEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCc
Confidence 100000 011111223445788999999999999999999999999876643 3567899999
Q ss_pred EEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEE-EEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Q 048801 591 YVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRI-YEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGES 664 (1715)
Q Consensus 591 ~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~t-l~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~ 664 (1715)
+++++|| ++.+||+|...+.|.+||+.+.+.... +.-|...|.+++|||+..+||+|+-|-.|.||++.....
T Consensus 491 T~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 491 TDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK 564 (603)
T ss_pred eEEEECC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh
Confidence 9999999 889999999999999999998876433 334889999999999999999999999999999976543
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-32 Score=299.99 Aligned_cols=295 Identities=23% Similarity=0.307 Sum_probs=244.5
Q ss_pred cceeEEEEcCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCC-----CCcEEEEecCCCCCeEEEEECCCCCEEEEEeC
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRS-GRFVITGSDDRLVKIWSME-----TAFCLASCRGHEGDITDLAVSSNNTLVASASN 305 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpD-G~~LaTGS~DGtIrIWDl~-----tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~ 305 (1715)
.+.+..+|+||.+.|+.++..+. -..|++++.|.+|.+|++. .|..++.+.||...|..++.++||++.++++.
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW 83 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccc
Confidence 35567789999999999999886 4688999999999999874 57889999999999999999999999999999
Q ss_pred CCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCC
Q 048801 306 DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 306 DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
|+++++||+.+|+..+.|.+|...|.+++|++++. .+++|+.|.+|.+|++....
T Consensus 84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~---qivSGSrDkTiklwnt~g~c---------------------- 138 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR---QIVSGSRDKTIKLWNTLGVC---------------------- 138 (315)
T ss_pred cceEEEEEecCCcEEEEEEecCCceEEEEecCCCc---eeecCCCcceeeeeeecccE----------------------
Confidence 99999999999999999999999999999999988 89999999999999975321
Q ss_pred CCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccc
Q 048801 386 NNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~ 465 (1715)
.++-..+ .+.+.|.|+.|+|+..
T Consensus 139 --------------------------k~t~~~~---------------------------~~~~WVscvrfsP~~~---- 161 (315)
T KOG0279|consen 139 --------------------------KYTIHED---------------------------SHREWVSCVRFSPNES---- 161 (315)
T ss_pred --------------------------EEEEecC---------------------------CCcCcEEEEEEcCCCC----
Confidence 1111110 1245677777777531
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~ 545 (1715)
...|++++.|++|++||+++.+ ....+.+|.
T Consensus 162 --------------------~p~Ivs~s~DktvKvWnl~~~~-----------------------------l~~~~~gh~ 192 (315)
T KOG0279|consen 162 --------------------NPIIVSASWDKTVKVWNLRNCQ-----------------------------LRTTFIGHS 192 (315)
T ss_pred --------------------CcEEEEccCCceEEEEccCCcc-----------------------------hhhcccccc
Confidence 2477788888888888877532 234567789
Q ss_pred CCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEE
Q 048801 546 RGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRI 625 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~t 625 (1715)
+.++.+++||||.++++|+.||.+.+||+..++.+..+. |...|.+++|+| +...| ++..+-.|+|||+.++.++..
T Consensus 193 ~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fsp-nrywL-~~at~~sIkIwdl~~~~~v~~ 269 (315)
T KOG0279|consen 193 GYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSP-NRYWL-CAATATSIKIWDLESKAVVEE 269 (315)
T ss_pred ccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecC-CceeE-eeccCCceEEEeccchhhhhh
Confidence 999999999999999999999999999999999988775 788899999999 54444 455666799999999988877
Q ss_pred EEcc---------cceEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 626 YEIG---------RFKLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 626 l~~h---------~~~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
+... .....+++||+||..|++|..|+.|++|.+.
T Consensus 270 l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 270 LKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 6521 2235578999999999999999999999975
No 13
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.3e-31 Score=310.94 Aligned_cols=441 Identities=18% Similarity=0.284 Sum_probs=319.6
Q ss_pred ccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-cE-EEEecCCCCCeEEEEECCCCCEEEEEeCC--
Q 048801 231 QKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA-FC-LASCRGHEGDITDLAVSSNNTLVASASND-- 306 (1715)
Q Consensus 231 ~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg-k~-l~tL~gHs~~VtsLafSpDg~lLASGS~D-- 306 (1715)
........+..|...|+-..|+|.|-|+|+|...|.|+|||.... .. ...++--.++|.+|+|+.|++.|++.+..
T Consensus 47 ~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGre 126 (603)
T KOG0318|consen 47 DNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRE 126 (603)
T ss_pred CCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcc
Confidence 344456778899999999999999999999999999999998653 22 23466778999999999999998887653
Q ss_pred CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 307 GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
...+++-+++|..+..+.||...|++++|-|..+ +.+++|+.|++|.+|+=.--++
T Consensus 127 rfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRP--fRi~T~sdDn~v~ffeGPPFKF---------------------- 182 (603)
T KOG0318|consen 127 RFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRP--FRIATGSDDNTVAFFEGPPFKF---------------------- 182 (603)
T ss_pred ceeEEEEecCCCccceeeccceeEeeeeccCCCc--eEEEeccCCCeEEEeeCCCeee----------------------
Confidence 3333444447888999999999999999999876 4899999999999996321111
Q ss_pred CCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccc
Q 048801 387 NGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSA 466 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~ 466 (1715)
......|..-|.|+.|+|||.+|++++.||.|.+||-.++.. ...+..-.+|.+.|.+|+|+|++
T Consensus 183 ---k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~------vg~l~~~~aHkGsIfalsWsPDs------ 247 (603)
T KOG0318|consen 183 ---KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK------VGELEDSDAHKGSIFALSWSPDS------ 247 (603)
T ss_pred ---eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccE------EEEecCCCCccccEEEEEECCCC------
Confidence 122345677799999999999999999999999999988643 22222234899999999999997
Q ss_pred ccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccc------------cccc--ccccCCCCCCCCCC
Q 048801 467 MSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGR------------WTRA--YHLKVPPPPLPPQP 532 (1715)
Q Consensus 467 ~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~------------~~~~--~~l~~~~~~~~~~~ 532 (1715)
..|+|++.|.+++|||+.+..+..+... |... ..+.+........+
T Consensus 248 --------------------~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~ 307 (603)
T KOG0318|consen 248 --------------------TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNP 307 (603)
T ss_pred --------------------ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecc
Confidence 7999999999999999998765433211 1111 11111111111122
Q ss_pred CCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceE-------------------------------E
Q 048801 533 PRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLV-------------------------------H 581 (1715)
Q Consensus 533 ~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l-------------------------------~ 581 (1715)
....+...+.+|...|+++..++|+.+|++|+.||.|.-|+..+|..- +
T Consensus 308 ~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~ 387 (603)
T KOG0318|consen 308 SDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLR 387 (603)
T ss_pred cCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEE
Confidence 233467788899999999999999999999999999999998764310 0
Q ss_pred E------------------------------------------EecCC--------CCeEEEEEccCCCcEEEEEeCCCc
Q 048801 582 S------------------------------------------LTGHS--------ASSYVLDVHPFNPRIAMSAGYDGR 611 (1715)
Q Consensus 582 t------------------------------------------L~gH~--------~~V~sLafSP~dg~lLaSgs~DGt 611 (1715)
. |+.+. -...+++++| ++..++.|+.||.
T Consensus 388 ~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgk 466 (603)
T KOG0318|consen 388 VISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGK 466 (603)
T ss_pred EEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC-CCCEEEEecccce
Confidence 0 00010 1224677888 7889999999999
Q ss_pred EEEEECCCCce--EEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccccccceeecCCCccEEEcCCCCe
Q 048801 612 TIVWDIWEGTP--IRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKYDQFFLGDYRPLIRDSLGNV 689 (1715)
Q Consensus 612 I~VWDl~tgk~--l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~~~~~~~fs~D~r~L~~d~~g~v 689 (1715)
|+||.+..+.. ...+..|.++|++++|||||.+||+|+..+.+.+|++.+.+... ..-.|+
T Consensus 467 vhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~---~~w~FH-------------- 529 (603)
T KOG0318|consen 467 VHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT---NRWAFH-------------- 529 (603)
T ss_pred EEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceec---ceeeee--------------
Confidence 99999976543 33455699999999999999999999999999999998875310 000111
Q ss_pred eecccccccCcCCCCCcccCCCCCCCCCccchhhhhhcccccceeecCCCCeEEeeeccccCccC---CCCCchhhhccc
Q 048801 690 LDQETQLVPHRRNIQDPLCDSSMIPYEEPYQSMYQQRRLGALGIEWRPSSIKLAIGLDFSLGQDY---AMPPLEDLERMM 766 (1715)
Q Consensus 690 ld~~tq~~p~~~~~~~~lvD~~~~p~p~~~q~~~q~r~~g~~~l~~sPdg~~lAvg~~~~l~~~~---~~~P~~d~~~~i 766 (1715)
. -....++|+|+...+|.| +|+.-+ .|.-.+..=-+-
T Consensus 530 ----------t---------------------------akI~~~aWsP~n~~vATG---SlDt~Viiysv~kP~~~i~ik 569 (603)
T KOG0318|consen 530 ----------T---------------------------AKINCVAWSPNNKLVATG---SLDTNVIIYSVKKPAKHIIIK 569 (603)
T ss_pred ----------e---------------------------eeEEEEEeCCCceEEEec---cccceEEEEEccChhhheEec
Confidence 0 012358999999999998 222221 122111110112
Q ss_pred ccCCCccccCcccCccccccCC
Q 048801 767 EPVPEFIDPVYWEPENEVISDD 788 (1715)
Q Consensus 767 ~~~p~~i~~~~~~p~~~~~~~~ 788 (1715)
-..+..+..+.|..|.++++.-
T Consensus 570 nAH~~gVn~v~wlde~tvvSsG 591 (603)
T KOG0318|consen 570 NAHLGGVNSVAWLDESTVVSSG 591 (603)
T ss_pred cccccCceeEEEecCceEEecc
Confidence 2345558899999999888743
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1e-31 Score=295.87 Aligned_cols=294 Identities=18% Similarity=0.227 Sum_probs=263.2
Q ss_pred EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEE
Q 048801 278 LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW 357 (1715)
Q Consensus 278 l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIW 357 (1715)
.++|+||.+.|.++.|++|.++|++++.||.+.|||.-+...+..+.-....|..++|+|.+. ++++|+.|+.+.||
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~---~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGN---FVACGGLDNKCSIY 124 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCC---eEEecCcCceeEEE
Confidence 378999999999999999999999999999999999999999999988899999999999998 89999999999999
Q ss_pred ecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCC
Q 048801 358 DARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQP 437 (1715)
Q Consensus 358 Dl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~ 437 (1715)
++.+..... .........+|.+.+.|+.|..| ..|+|++.|.++.+||+.++
T Consensus 125 ~ls~~d~~g-------------------~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g-------- 176 (343)
T KOG0286|consen 125 PLSTRDAEG-------------------NVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETG-------- 176 (343)
T ss_pred ecccccccc-------------------cceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccc--------
Confidence 997542110 01112335678889999999985 56899999999999999985
Q ss_pred ceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccc
Q 048801 438 IHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTR 517 (1715)
Q Consensus 438 ~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~ 517 (1715)
..+..+.+|.+.|.+|.++|.. .+.+++|+.|+..++||++.
T Consensus 177 -~~~~~f~GH~gDV~slsl~p~~-------------------------~ntFvSg~cD~~aklWD~R~------------ 218 (343)
T KOG0286|consen 177 -QQTQVFHGHTGDVMSLSLSPSD-------------------------GNTFVSGGCDKSAKLWDVRS------------ 218 (343)
T ss_pred -eEEEEecCCcccEEEEecCCCC-------------------------CCeEEecccccceeeeeccC------------
Confidence 4578899999999999999943 38999999999999999996
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec--CCCCeEEEEE
Q 048801 518 AYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG--HSASSYVLDV 595 (1715)
Q Consensus 518 ~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g--H~~~V~sLaf 595 (1715)
+..++.+.+|...|+++.|.|+|.-+++|+.|++.++||++..+.+..+.. -..+|++++|
T Consensus 219 -----------------~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~F 281 (343)
T KOG0286|consen 219 -----------------GQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAF 281 (343)
T ss_pred -----------------cceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEE
Confidence 346678899999999999999999999999999999999999999988863 3467999999
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 596 HPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 596 SP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
|. .+++|.+|..|.++.|||.-.++.+..+.+|...|.++..+|||.-|++|+.|..|+||.
T Consensus 282 S~-SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 282 SK-SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cc-cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 98 889999999999999999999999999999999999999999999999999999999994
No 15
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.2e-31 Score=318.33 Aligned_cols=376 Identities=18% Similarity=0.270 Sum_probs=293.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--------cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEEC
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA--------FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRL 314 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg--------k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl 314 (1715)
..+|.|+.|||+|+++|.|.. +.+.||..... ...+++.||-..|++|.|+.|.++|++||.|.+++||++
T Consensus 96 k~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v 174 (893)
T KOG0291|consen 96 KRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGV 174 (893)
T ss_pred cCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEe
Confidence 578999999999999998864 68999986422 345678899999999999999999999999999999999
Q ss_pred CCCCc--eEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCC-CCC----
Q 048801 315 PDGLP--ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP-SNN---- 387 (1715)
Q Consensus 315 ~tg~~--l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~-~~~---- 387 (1715)
...+- ...+.+|.+.|.+.-|..+.. .|++.+.||.+.+|.....-... ....+............ ...
T Consensus 175 ~~~k~~~~~~l~gHkd~VvacfF~~~~~---~l~tvskdG~l~~W~~~~~P~~~-~~~~kd~eg~~d~~~~~~~Eek~~~ 250 (893)
T KOG0291|consen 175 DGNKNLFTYALNGHKDYVVACFFGANSL---DLYTVSKDGALFVWTCDLRPPEL-DKAEKDEEGSDDEEMDEDGEEKTHK 250 (893)
T ss_pred ccccccceEeccCCCcceEEEEeccCcc---eEEEEecCceEEEEEecCCCccc-ccccccccccccccccccchhhhcc
Confidence 87655 667789999999999999876 79999999999999876320000 00000000000000000 000
Q ss_pred -----CCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccc
Q 048801 388 -----GPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVA 462 (1715)
Q Consensus 388 -----~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~a 462 (1715)
............|+|++|++.-+.||+|-..|...+|.+.. ...++.+.-...+|..++|+..|
T Consensus 251 ~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~---------f~lih~LSis~~~I~t~~~N~tG-- 319 (893)
T KOG0291|consen 251 IFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD---------FNLIHSLSISDQKILTVSFNSTG-- 319 (893)
T ss_pred eEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC---------ceEEEEeecccceeeEEEecccC--
Confidence 00111122236799999999999999999999999999976 34567777777889999999766
Q ss_pred ccccccccccccccccccCCcccCceEEEEcCC-CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccc
Q 048801 463 SRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD-GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRL 541 (1715)
Q Consensus 463 s~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D-GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l 541 (1715)
+.|+.|+.. |.+.||+..+.. -+...
T Consensus 320 ------------------------DWiA~g~~klgQLlVweWqsEs-----------------------------YVlKQ 346 (893)
T KOG0291|consen 320 ------------------------DWIAFGCSKLGQLLVWEWQSES-----------------------------YVLKQ 346 (893)
T ss_pred ------------------------CEEEEcCCccceEEEEEeeccc-----------------------------eeeec
Confidence 678777654 899999887532 23456
Q ss_pred cCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC---
Q 048801 542 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW--- 618 (1715)
Q Consensus 542 ~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~--- 618 (1715)
.+|...++++++||||++||||+.||.|+|||..+|-|+.+|..|+..|+++.|+. .++.+++++.||+|+.||+.
T Consensus 347 QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 347 QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccc
Confidence 78899999999999999999999999999999999999999999999999999998 78899999999999999874
Q ss_pred -----------------------------------------CCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEE
Q 048801 619 -----------------------------------------EGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLL 657 (1715)
Q Consensus 619 -----------------------------------------tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IW 657 (1715)
+|+.+-.+.+|.++|.+++|+|+|..||+++.|.+|++|
T Consensus 426 NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW 505 (893)
T KOG0291|consen 426 NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIW 505 (893)
T ss_pred eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEE
Confidence 344455556899999999999999999999999999999
Q ss_pred ECCCC--c--cc--cccccceeecCCCccEEEcC-CCC
Q 048801 658 NTGQG--E--SQ--KDAKYDQFFLGDYRPLIRDS-LGN 688 (1715)
Q Consensus 658 dl~tG--e--~~--k~~~~~~~fs~D~r~L~~d~-~g~ 688 (1715)
++-.. + .+ ..-...+.|.|||+.|+... +|.
T Consensus 506 ~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgq 543 (893)
T KOG0291|consen 506 DIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQ 543 (893)
T ss_pred EeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecce
Confidence 98543 1 11 12235568999999999754 344
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.5e-31 Score=288.67 Aligned_cols=295 Identities=19% Similarity=0.357 Sum_probs=255.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC--ceEEEeCCCCCeEEE
Q 048801 256 RFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL--PISVLRGHTGAVTAI 333 (1715)
Q Consensus 256 ~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~--~l~~L~gH~~~VtsL 333 (1715)
-+|+|+|.|.+|++|...+|.+.++++...+.|+.+.+.||+++||+|+.- .|++||+.++. ++.++.+|...|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEE
Confidence 489999999999999999999999999888999999999999999999875 79999998874 689999999999999
Q ss_pred EecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEE
Q 048801 334 AFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFV 413 (1715)
Q Consensus 334 afSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~La 413 (1715)
.|..+++ .+++|+.||+++|||++...+.+.+ .+...|+++..+|+...|+
T Consensus 90 gF~~dgr---WMyTgseDgt~kIWdlR~~~~qR~~--------------------------~~~spVn~vvlhpnQteLi 140 (311)
T KOG0315|consen 90 GFQCDGR---WMYTGSEDGTVKIWDLRSLSCQRNY--------------------------QHNSPVNTVVLHPNQTELI 140 (311)
T ss_pred EEeecCe---EEEecCCCceEEEEeccCcccchhc--------------------------cCCCCcceEEecCCcceEE
Confidence 9999998 8999999999999999875433322 2356799999999999999
Q ss_pred EecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEc
Q 048801 414 TGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS 493 (1715)
Q Consensus 414 tGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS 493 (1715)
+|..+|.|+|||+....+.. .........|.++...|+| .+++.+.
T Consensus 141 s~dqsg~irvWDl~~~~c~~--------~liPe~~~~i~sl~v~~dg--------------------------sml~a~n 186 (311)
T KOG0315|consen 141 SGDQSGNIRVWDLGENSCTH--------ELIPEDDTSIQSLTVMPDG--------------------------SMLAAAN 186 (311)
T ss_pred eecCCCcEEEEEccCCcccc--------ccCCCCCcceeeEEEcCCC--------------------------cEEEEec
Confidence 99999999999998753311 1122334589999999987 7999999
Q ss_pred CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEE
Q 048801 494 RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN 573 (1715)
Q Consensus 494 ~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWD 573 (1715)
..|...+|++-+..... .-.++..+..|.+-|..+.+|||+++||+++.|.+++||+
T Consensus 187 nkG~cyvW~l~~~~~~s-----------------------~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn 243 (311)
T KOG0315|consen 187 NKGNCYVWRLLNHQTAS-----------------------ELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWN 243 (311)
T ss_pred CCccEEEEEccCCCccc-----------------------cceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEe
Confidence 99999999987533111 1234566888999999999999999999999999999999
Q ss_pred CCCC-ceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEE
Q 048801 574 AVDG-SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKF 638 (1715)
Q Consensus 574 l~sg-~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svaf 638 (1715)
+.+. +.-..+.+|...++..+||. ++.+|+||+.|+.+++|++..++.++.+.+|.....+++.
T Consensus 244 ~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 244 TDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred cCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 9887 66678899999999999999 8899999999999999999999999999999888877765
No 17
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.7e-31 Score=300.07 Aligned_cols=339 Identities=18% Similarity=0.254 Sum_probs=280.9
Q ss_pred eEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEEC
Q 048801 235 NIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRL 314 (1715)
Q Consensus 235 ~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl 314 (1715)
-+.+|..|++.|++|+.+|+.++++|||.|..-.||++.+|..+..+.+|...|+++.||.||.+||||+.+|.|+||..
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 315 PDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 315 ~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
.++.....+...-..|.-|.|+|... .|+.|+.||.|.+|.+........ ..
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp~a~---illAG~~DGsvWmw~ip~~~~~kv-------------------------~~ 187 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHPRAH---ILLAGSTDGSVWMWQIPSQALCKV-------------------------MS 187 (399)
T ss_pred ccCceEEEeecccCceEEEEeccccc---EEEeecCCCcEEEEECCCcceeeE-------------------------ec
Confidence 99999988877778899999999876 899999999999999976533222 23
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecC-CCCCeeEEEEccCcccccccccccccc
Q 048801 395 LQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSG-HENDVNYVQFSGCAVASRSAMSDAFKE 473 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~g-H~~~V~sLafspdg~as~~~~~~~~~~ 473 (1715)
+|...++|-.|.|+|+.+++|..||+|++|+..++. + +..+.+ ......++.++..+
T Consensus 188 Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~------p---~~~~~~~e~~~~~~~~~~~~~------------- 245 (399)
T KOG0296|consen 188 GHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ------P---LHKITQAEGLELPCISLNLAG------------- 245 (399)
T ss_pred CCCCCcccccccCCCceEEEEecCceEEEEecCCCc------e---eEEecccccCcCCcccccccc-------------
Confidence 467889999999999999999999999999998863 2 222221 12345566665544
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCC---CeeE
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPR---GVNM 550 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~---~Vts 550 (1715)
..++.|+.++.+.+-+..+++.+...... .......+.. .|..
T Consensus 246 -------------~~~~~g~~e~~~~~~~~~sgKVv~~~n~~---------------------~~~l~~~~e~~~esve~ 291 (399)
T KOG0296|consen 246 -------------STLTKGNSEGVACGVNNGSGKVVNCNNGT---------------------VPELKPSQEELDESVES 291 (399)
T ss_pred -------------ceeEeccCCccEEEEccccceEEEecCCC---------------------Cccccccchhhhhhhhh
Confidence 67888999999998887776644322110 0000111222 3455
Q ss_pred EEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEccc
Q 048801 551 IVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGR 630 (1715)
Q Consensus 551 lafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~ 630 (1715)
+.|+..=.+.|+|+.||+|.|||+...++.+.+. |..+|+.+.|-+ ..+|++++.+|.|+.||.++|+++.++.+|.
T Consensus 292 ~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~ 368 (399)
T KOG0296|consen 292 IPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQ 368 (399)
T ss_pred cccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCc
Confidence 5566667788999999999999998877766664 888899999977 4677889999999999999999999999999
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 631 FKLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 631 ~~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
.+|.+++++|+++++++++.|+..+||++.
T Consensus 369 ~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 369 MGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred hheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999999999999863
No 18
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-32 Score=306.34 Aligned_cols=308 Identities=22% Similarity=0.326 Sum_probs=274.4
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEE
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRV 311 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrV 311 (1715)
...+.+.+.||..+|+.+.|+|+-..+++++.|++|++||..+|++...|+||...|.+|+|+..|++||+++.|-.+.+
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred EECCC-CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCC
Q 048801 312 WRLPD-GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPS 390 (1715)
Q Consensus 312 WDl~t-g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~ 390 (1715)
||..+ .++++.+.+|...|.+++|-|.+. +|++++.|.+|+.|++.++-++.++
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd---~ilS~srD~tik~We~~tg~cv~t~---------------------- 231 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGD---HILSCSRDNTIKAWECDTGYCVKTF---------------------- 231 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCC---eeeecccccceeEEecccceeEEec----------------------
Confidence 99987 577888899999999999999987 8999999999999999999877654
Q ss_pred CCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccc
Q 048801 391 SSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDA 470 (1715)
Q Consensus 391 ~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~ 470 (1715)
.+|...|..+..+.||.++++++.|.+|++|-+.+.. +...+..|+-+|.|++|.|.....
T Consensus 232 ---~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~---------~k~~lR~hEh~vEci~wap~~~~~------- 292 (406)
T KOG0295|consen 232 ---PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ---------CKAELREHEHPVECIAWAPESSYP------- 292 (406)
T ss_pred ---cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch---------hhhhhhccccceEEEEecccccCc-------
Confidence 2356679999999999999999999999999998753 456788999999999999864100
Q ss_pred ccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeE
Q 048801 471 FKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNM 550 (1715)
Q Consensus 471 ~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vts 550 (1715)
.-..++++.
T Consensus 293 ---------------~i~~at~~~-------------------------------------------------------- 301 (406)
T KOG0295|consen 293 ---------------SISEATGST-------------------------------------------------------- 301 (406)
T ss_pred ---------------chhhccCCC--------------------------------------------------------
Confidence 000000000
Q ss_pred EEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEccc
Q 048801 551 IVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGR 630 (1715)
Q Consensus 551 lafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~ 630 (1715)
..+.++++++.|++|++||+.+|.++.+|.+|.+.|..++|+| +|++|+++..|++++|||+.+++|+.++..|.
T Consensus 302 ----~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~ 376 (406)
T KOG0295|consen 302 ----NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHE 376 (406)
T ss_pred ----CCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCc
Confidence 0467899999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 631 FKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 631 ~~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
.-|+++.|..+..++++|+-|..+.+|.-
T Consensus 377 hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 377 HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999999999999999999999999963
No 19
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.98 E-value=8e-31 Score=290.11 Aligned_cols=293 Identities=23% Similarity=0.382 Sum_probs=251.2
Q ss_pred eEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 235 NIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSME-TAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 235 ~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~-tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
++..+.||.+.|+++.|+|+|.+|||||.|..|.+|++. .-+-...+++|.++|..+.|.+|++.|++++.|.+|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 455688999999999999999999999999999999964 4566778899999999999999999999999999999999
Q ss_pred CCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCC
Q 048801 314 LPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSN 393 (1715)
Q Consensus 314 l~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~ 393 (1715)
+++|+.++.+++|..-|+++.-+.-+ ..++.+++.||++++||+++...+.++.
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg--~~lv~SgsdD~t~kl~D~R~k~~~~t~~------------------------ 172 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRG--PQLVCSGSDDGTLKLWDIRKKEAIKTFE------------------------ 172 (338)
T ss_pred cccceeeehhccccceeeecCccccC--CeEEEecCCCceEEEEeecccchhhccc------------------------
Confidence 99999999999999999999844444 3478899999999999999776554432
Q ss_pred CCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccc
Q 048801 394 GLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKE 473 (1715)
Q Consensus 394 ~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~ 473 (1715)
...++++++|..++..+.+|+-|+.|++||++.. ..+.++.||.+.|+.+..++++
T Consensus 173 --~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~---------d~~~~lsGh~DtIt~lsls~~g------------- 228 (338)
T KOG0265|consen 173 --NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN---------DGLYTLSGHADTITGLSLSRYG------------- 228 (338)
T ss_pred --cceeEEEEEecccccceeeccccCceeeeccccC---------cceEEeecccCceeeEEeccCC-------------
Confidence 2456899999999999999999999999999864 3578999999999999999987
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC----CCee
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP----RGVN 549 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~----~~Vt 549 (1715)
..+.+-+.|.++++||++.-.. ...++..+.+|. ....
T Consensus 229 -------------s~llsnsMd~tvrvwd~rp~~p-------------------------~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 229 -------------SFLLSNSMDNTVRVWDVRPFAP-------------------------SQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred -------------CccccccccceEEEEEecccCC-------------------------CCceEEEeecchhhhhhhcc
Confidence 7899999999999999984110 011122222222 2345
Q ss_pred EEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 550 MIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 550 slafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
.++|+|+++.+.+|+.|..+++||......+..+.||.+.|++++|+| ...+|.+++.|.+|++=.
T Consensus 271 ~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 271 KCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYLGE 336 (338)
T ss_pred eeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEeec
Confidence 679999999999999999999999999999999999999999999999 777888999999998743
No 20
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=3.8e-30 Score=309.99 Aligned_cols=412 Identities=16% Similarity=0.254 Sum_probs=314.2
Q ss_pred ccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEE
Q 048801 224 AKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASA 303 (1715)
Q Consensus 224 ~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASG 303 (1715)
....+.......+-+|.||..+|+++.|+..|..||+||.|+.|.+||+-...-+..|+||...|+.+-|..+.++|++.
T Consensus 88 sVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~ 167 (888)
T KOG0306|consen 88 SVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSV 167 (888)
T ss_pred eEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEe
Confidence 33334444447788999999999999999999999999999999999998888889999999999999999988999999
Q ss_pred eCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCC---------------------
Q 048801 304 SNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYS--------------------- 362 (1715)
Q Consensus 304 S~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg--------------------- 362 (1715)
|.|+.|++||+.+..+..+.-.|.+.|+++++.++ .+++++.|+.+++|++...
T Consensus 168 sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~-----~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rq 242 (888)
T KOG0306|consen 168 SKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEK-----LLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQ 242 (888)
T ss_pred ccCceEEEEecccceeeeEEecccceEEEEEEecc-----eEEEEecCCceEEEEeecccccccccccceeeccceeeec
Confidence 99999999999999999999999999999999983 7899999999999998110
Q ss_pred ---CCcceecC--------CCCC-----------------------------C------Ccc------------------
Q 048801 363 ---QYSPRIYL--------PKPP-----------------------------D------AIT------------------ 378 (1715)
Q Consensus 363 ---~~l~~i~~--------~~~~-----------------------------~------~i~------------------ 378 (1715)
+.+..... .... . .+.
T Consensus 243 sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~k 322 (888)
T KOG0306|consen 243 SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAK 322 (888)
T ss_pred cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhh
Confidence 00000000 0000 0 000
Q ss_pred ---------CccC---------------CCCCCCC---------CCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEe
Q 048801 379 ---------GKSN---------------VPSNNGP---------SSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWS 425 (1715)
Q Consensus 379 ---------g~~~---------------~~~~~~~---------~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWD 425 (1715)
+... ... ... .....+|...|.+++++.+...+++|+ .+.|.||+
T Consensus 323 iks~dv~~~~~~~~~lv~l~nNtv~~ysl~~-s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn 400 (888)
T KOG0306|consen 323 IKSFDVTPSGGTENTLVLLANNTVEWYSLEN-SGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWN 400 (888)
T ss_pred eeEEEEEecCCcceeEEEeecCceEEEEecc-CCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEE
Confidence 0000 000 000 133456778899999998887777765 57888998
Q ss_pred CCCCCccCCCC-------------------------------CceeeeeecCCCCCeeEEEEccCccccccccccccccc
Q 048801 426 ACKSSVEDSEQ-------------------------------PIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEE 474 (1715)
Q Consensus 426 l~t~~~~~~~~-------------------------------~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~ 474 (1715)
..+.++..... ....+....+|.+.|.+++.+|++
T Consensus 401 ~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~-------------- 466 (888)
T KOG0306|consen 401 RDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN-------------- 466 (888)
T ss_pred ccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCC--------------
Confidence 88766422211 012233456899999999999986
Q ss_pred ccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC
Q 048801 475 NVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS 554 (1715)
Q Consensus 475 ~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS 554 (1715)
..+++|+.|.+|++||..--... .+...+.. .-...+...-...|.|+.+|
T Consensus 467 ------------~g~vT~saDktVkfWdf~l~~~~--~gt~~k~l---------------sl~~~rtLel~ddvL~v~~S 517 (888)
T KOG0306|consen 467 ------------KGFVTGSADKTVKFWDFKLVVSV--PGTQKKVL---------------SLKHTRTLELEDDVLCVSVS 517 (888)
T ss_pred ------------CceEEecCCcEEEEEeEEEEecc--Ccccceee---------------eeccceEEeccccEEEEEEc
Confidence 78999999999999997631100 00000000 01112334456789999999
Q ss_pred CCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEE
Q 048801 555 LDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLV 634 (1715)
Q Consensus 555 PDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~ 634 (1715)
|||++||++--|.+|+||-+.+.+....|.||.-+|.|+..+| +..+++||+.|.+|+||-+.-|.|.+.+.+|...|.
T Consensus 518 pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm 596 (888)
T KOG0306|consen 518 PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVM 596 (888)
T ss_pred CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCcee
Confidence 9999999999999999999999999999999999999999999 889999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCccccccc------cceeecCCCccEEEcCC
Q 048801 635 DGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAK------YDQFFLGDYRPLIRDSL 686 (1715)
Q Consensus 635 svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~~~------~~~~fs~D~r~L~~d~~ 686 (1715)
++.|.|....+++++.||.|+-||-..-+.++... +-...+|+|..++..++
T Consensus 597 ~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~sh 654 (888)
T KOG0306|consen 597 SVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH 654 (888)
T ss_pred EEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccC
Confidence 99999999999999999999999976666655433 22344455554444433
No 21
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=8.6e-30 Score=290.85 Aligned_cols=288 Identities=31% Similarity=0.545 Sum_probs=251.3
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC
Q 048801 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP 315 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~ 315 (1715)
+++|.+|.+.|++++|+|++++|++++.||.|++|++.++.....+.+|...+.++.|++++++|++++.||.|++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 35678999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred CCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCC
Q 048801 316 DGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL 395 (1715)
Q Consensus 316 tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~ 395 (1715)
++..+..+..|...|.++.|++++. ++++++.||.|.+||+.+++....+. .
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~-------------------------~ 133 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGR---ILSSSSRDKTIKVWDVETGKCLTTLR-------------------------G 133 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCC---EEEEecCCCeEEEEECCCcEEEEEec-------------------------c
Confidence 9888999999999999999999865 77788889999999998665433321 2
Q ss_pred CCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccc
Q 048801 396 QSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 396 h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
|...|.+++|+|++.++++++.+|.|++||+.+++ .+..+..|...|.++.|++++
T Consensus 134 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---------~~~~~~~~~~~i~~~~~~~~~--------------- 189 (289)
T cd00200 134 HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK---------CVATLTGHTGEVNSVAFSPDG--------------- 189 (289)
T ss_pred CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc---------cceeEecCccccceEEECCCc---------------
Confidence 45569999999999999998889999999997542 345566888899999999975
Q ss_pred cccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC
Q 048801 476 VPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL 555 (1715)
Q Consensus 476 ~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP 555 (1715)
..+++++.||.|.+||+.++. ....+..+...+.+++|++
T Consensus 190 -----------~~l~~~~~~~~i~i~d~~~~~-----------------------------~~~~~~~~~~~i~~~~~~~ 229 (289)
T cd00200 190 -----------EKLLSSSSDGTIKLWDLSTGK-----------------------------CLGTLRGHENGVNSVAFSP 229 (289)
T ss_pred -----------CEEEEecCCCcEEEEECCCCc-----------------------------eecchhhcCCceEEEEEcC
Confidence 688888889999999997532 1222335666899999999
Q ss_pred CCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 556 DNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 556 DG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
++.++++++.++.|++|++.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++|+
T Consensus 230 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 230 DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC-CCCEEEEecCCCeEEecC
Confidence 999999888899999999999999999999999999999999 678889999999999996
No 22
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=3.1e-29 Score=286.24 Aligned_cols=288 Identities=27% Similarity=0.440 Sum_probs=251.5
Q ss_pred EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEE
Q 048801 278 LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW 357 (1715)
Q Consensus 278 l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIW 357 (1715)
+.++.+|.+.|++++|+|++.+|++++.||.|++|++.++.....+..|...+..+.|++++. +|++++.||.|++|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~~~~~~i~i~ 78 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT---YLASGSSDKTIRLW 78 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCC---EEEEEcCCCeEEEE
Confidence 356778999999999999999999999999999999999988889999999999999999986 89999999999999
Q ss_pred ecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCC
Q 048801 358 DARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQP 437 (1715)
Q Consensus 358 Dl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~ 437 (1715)
++.+++....+ ..+...|.+++|++++.++++++.+|.|.+|++.+.
T Consensus 79 ~~~~~~~~~~~-------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------- 125 (289)
T cd00200 79 DLETGECVRTL-------------------------TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-------- 125 (289)
T ss_pred EcCcccceEEE-------------------------eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc--------
Confidence 99876433322 123456999999999999999888999999999753
Q ss_pred ceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccc
Q 048801 438 IHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTR 517 (1715)
Q Consensus 438 ~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~ 517 (1715)
.....+..|...|.++.|+|++ .++++++.||.|.+||+.+++
T Consensus 126 -~~~~~~~~~~~~i~~~~~~~~~--------------------------~~l~~~~~~~~i~i~d~~~~~---------- 168 (289)
T cd00200 126 -KCLTTLRGHTDWVNSVAFSPDG--------------------------TFVASSSQDGTIKLWDLRTGK---------- 168 (289)
T ss_pred -EEEEEeccCCCcEEEEEEcCcC--------------------------CEEEEEcCCCcEEEEEccccc----------
Confidence 3455666888999999999964 577777779999999997533
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEcc
Q 048801 518 AYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHP 597 (1715)
Q Consensus 518 ~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP 597 (1715)
....+..+...|.+++|+|+++.|++++.++.|++||+.+++.+..+..|...+.++.|+|
T Consensus 169 -------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 229 (289)
T cd00200 169 -------------------CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP 229 (289)
T ss_pred -------------------cceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcC
Confidence 1223345667899999999999999999999999999999999999989999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 598 FNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 598 ~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
++.++++++.||.|++|++.+++.+..+..|...|.+++|+|++.+|++++.||.|.+|+
T Consensus 230 -~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 230 -DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred -CCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 588888888899999999999999999998888999999999999999999999999995
No 23
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=1.5e-30 Score=318.41 Aligned_cols=281 Identities=24% Similarity=0.391 Sum_probs=240.7
Q ss_pred eEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEEC
Q 048801 235 NIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRL 314 (1715)
Q Consensus 235 ~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl 314 (1715)
+..++..-...|+|+.|++|+..||.|-.|..|++|.+... .++.+++. .. ...+=+++.|-.+.+-|-
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~-~~---------l~~~d~~sad~~~~~~D~ 438 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDA-SD---------LSNIDTESADVDVDMLDD 438 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccch-hh---------hccccccccchhhhhccc
Confidence 45556556677999999999999999999999999999755 33344421 11 112224455555777777
Q ss_pred CCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 315 PDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 315 ~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
..+....++.||.++|+.+.|+|+.+ +|++++.|++||+|.+.+..++-. ..
T Consensus 439 ~~~~~~~~L~GH~GPVyg~sFsPd~r---fLlScSED~svRLWsl~t~s~~V~-------------------------y~ 490 (707)
T KOG0263|consen 439 DSSGTSRTLYGHSGPVYGCSFSPDRR---FLLSCSEDSSVRLWSLDTWSCLVI-------------------------YK 490 (707)
T ss_pred cCCceeEEeecCCCceeeeeeccccc---ceeeccCCcceeeeecccceeEEE-------------------------ec
Confidence 77778888999999999999999998 899999999999999987654322 23
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccc
Q 048801 395 LQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEE 474 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~ 474 (1715)
+|..+|+++.|+|.|-+||+|+.|++.++|.... ..+++.+.+|-+.|.|+.|+|+.
T Consensus 491 GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~---------~~PlRifaghlsDV~cv~FHPNs-------------- 547 (707)
T KOG0263|consen 491 GHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH---------NKPLRIFAGHLSDVDCVSFHPNS-------------- 547 (707)
T ss_pred CCCcceeeEEecCCceEEEecCCCceeeeeeccc---------CCchhhhcccccccceEEECCcc--------------
Confidence 5788899999999999999999999999999875 35688999999999999999986
Q ss_pred ccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC
Q 048801 475 NVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS 554 (1715)
Q Consensus 475 ~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS 554 (1715)
.++++||.|.++++||+.++. .++.+.+|.++|++++||
T Consensus 548 ------------~Y~aTGSsD~tVRlWDv~~G~-----------------------------~VRiF~GH~~~V~al~~S 586 (707)
T KOG0263|consen 548 ------------NYVATGSSDRTVRLWDVSTGN-----------------------------SVRIFTGHKGPVTALAFS 586 (707)
T ss_pred ------------cccccCCCCceEEEEEcCCCc-----------------------------EEEEecCCCCceEEEEEc
Confidence 899999999999999998743 456678899999999999
Q ss_pred CCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC
Q 048801 555 LDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 555 PDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t 619 (1715)
|+|++|++|+.||.|.|||+.++.++..+.+|++.|++|.|+. ++.+||+||.|++|++||+..
T Consensus 587 p~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 587 PCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEec-CCCEEEecCCCCeEEEEEchh
Confidence 9999999999999999999999999999999999999999999 889999999999999999854
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=5.5e-30 Score=296.62 Aligned_cols=310 Identities=24% Similarity=0.373 Sum_probs=260.0
Q ss_pred EEecCCCCCeEEEEECCCCC-EEEEEeCCCeeEEEECCC--CC--ceEEEe------C----CCCCeEEEEecCCCCcce
Q 048801 279 ASCRGHEGDITDLAVSSNNT-LVASASNDFVIRVWRLPD--GL--PISVLR------G----HTGAVTAIAFSPRPSAIY 343 (1715)
Q Consensus 279 ~tL~gHs~~VtsLafSpDg~-lLASGS~DGtIrVWDl~t--g~--~l~~L~------g----H~~~VtsLafSPdg~~~~ 343 (1715)
..+. |..+|.+.+|+|-.. +|++|+.|-+.++|++.. .. ....|+ + ....|++|+|+.+|.
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~--- 248 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT--- 248 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC---
Confidence 3344 999999999999665 999999999999999864 11 111111 1 235799999999998
Q ss_pred EEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEE
Q 048801 344 QLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARV 423 (1715)
Q Consensus 344 ~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrV 423 (1715)
.|++|+.||.++||+..... + .....|.++|.++.|+..|.+|++++.|+++.+
T Consensus 249 ~LatG~~~G~~riw~~~G~l-~-------------------------~tl~~HkgPI~slKWnk~G~yilS~~vD~ttil 302 (524)
T KOG0273|consen 249 LLATGSEDGEARIWNKDGNL-I-------------------------STLGQHKGPIFSLKWNKKGTYILSGGVDGTTIL 302 (524)
T ss_pred eEEEeecCcEEEEEecCchh-h-------------------------hhhhccCCceEEEEEcCCCCEEEeccCCccEEE
Confidence 89999999999999975432 2 234557888999999999999999999999999
Q ss_pred EeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEec
Q 048801 424 WSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIP 503 (1715)
Q Consensus 424 WDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl 503 (1715)
||..++. ....+.-|..+-..|.|-. .+.|++++.||.|+|+.+
T Consensus 303 wd~~~g~---------~~q~f~~~s~~~lDVdW~~---------------------------~~~F~ts~td~~i~V~kv 346 (524)
T KOG0273|consen 303 WDAHTGT---------VKQQFEFHSAPALDVDWQS---------------------------NDEFATSSTDGCIHVCKV 346 (524)
T ss_pred EeccCce---------EEEeeeeccCCccceEEec---------------------------CceEeecCCCceEEEEEe
Confidence 9998753 2445555665545555554 468999999999999987
Q ss_pred CCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEE
Q 048801 504 RSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSL 583 (1715)
Q Consensus 504 ~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL 583 (1715)
.. ..+..++.+|.+.|.++.|.|.|.+|++++.|++++||+.........|
T Consensus 347 ~~-----------------------------~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l 397 (524)
T KOG0273|consen 347 GE-----------------------------DRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDL 397 (524)
T ss_pred cC-----------------------------CCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhh
Confidence 64 3466778889999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEccCCC--------cEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEE
Q 048801 584 TGHSASSYVLDVHPFNP--------RIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIY 655 (1715)
Q Consensus 584 ~gH~~~V~sLafSP~dg--------~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~ 655 (1715)
.+|...|+.+.|+|.++ ..+++++.|++|++||+..|.++.+|..|..+|.+++|||+|++||+|+.||.|.
T Consensus 398 ~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~ 477 (524)
T KOG0273|consen 398 QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVH 477 (524)
T ss_pred hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeE
Confidence 99999999999998654 5889999999999999999999999998999999999999999999999999999
Q ss_pred EEECCCCcccccc-----ccceeecCCCccEEE
Q 048801 656 LLNTGQGESQKDA-----KYDQFFLGDYRPLIR 683 (1715)
Q Consensus 656 IWdl~tGe~~k~~-----~~~~~fs~D~r~L~~ 683 (1715)
||++.+|+..+.. ..++.|+.+|..|..
T Consensus 478 iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~ 510 (524)
T KOG0273|consen 478 IWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGA 510 (524)
T ss_pred eccccchheeEeecCCCeEEEEEEcCCCCEEEE
Confidence 9999999887643 355667777766654
No 25
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=3.3e-30 Score=289.18 Aligned_cols=291 Identities=24% Similarity=0.401 Sum_probs=258.5
Q ss_pred cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEE
Q 048801 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVr 355 (1715)
++.+.+.||.+.|.|+++.|.+.++++|+.|++|+|||+.+|++..++.||-..|..+++++... ||++++.|+.|+
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHp---YlFs~gedk~VK 218 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHP---YLFSAGEDKQVK 218 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCc---eEEEecCCCeeE
Confidence 56677899999999999999999999999999999999999999999999999999999999887 999999999999
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCC
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSE 435 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~ 435 (1715)
.||+...+.++.+ .+|-..|.|++.+|.-..|++|+.|.+++|||+++.
T Consensus 219 CwDLe~nkvIR~Y-------------------------hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr------ 267 (460)
T KOG0285|consen 219 CWDLEYNKVIRHY-------------------------HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR------ 267 (460)
T ss_pred EEechhhhhHHHh-------------------------ccccceeEEEeccccceeEEecCCcceEEEeeeccc------
Confidence 9999988766543 345677999999999999999999999999999984
Q ss_pred CCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccc
Q 048801 436 QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRW 515 (1715)
Q Consensus 436 ~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~ 515 (1715)
..+..+.||..+|..+.+.|.. ..+++|+.|++|++||++.++
T Consensus 268 ---~~V~~l~GH~~~V~~V~~~~~d--------------------------pqvit~S~D~tvrlWDl~agk-------- 310 (460)
T KOG0285|consen 268 ---ASVHVLSGHTNPVASVMCQPTD--------------------------PQVITGSHDSTVRLWDLRAGK-------- 310 (460)
T ss_pred ---ceEEEecCCCCcceeEEeecCC--------------------------CceEEecCCceEEEeeeccCc--------
Confidence 3578999999999999998753 689999999999999998644
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEE
Q 048801 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDV 595 (1715)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLaf 595 (1715)
....+..|...|.+++.+|....+|+++.| .|+-|++..|..+..+.+|..-|++++.
T Consensus 311 ---------------------t~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~ 368 (460)
T KOG0285|consen 311 ---------------------TMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSV 368 (460)
T ss_pred ---------------------eeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeee
Confidence 345567788899999999999999999887 6999999999999999999999999999
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCCCceEEEEEc--------ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 596 HPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEI--------GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 596 SP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~--------h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
.. + .++++|+..|.|.+||..+|-..+.+.. ....|++.+|...|..|++|..|..|.+|.-..
T Consensus 369 ns-D-~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 369 NS-D-GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cc-C-ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 76 3 4777999999999999999866554421 234689999999999999999999999998543
No 26
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.3e-29 Score=301.99 Aligned_cols=404 Identities=20% Similarity=0.264 Sum_probs=321.6
Q ss_pred CCCCCCCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 048801 187 WPHMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRL 266 (1715)
Q Consensus 187 ~~~~~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGt 266 (1715)
.+..|...|..+.|...|..++.+... .....|++-...-+.+|+||.+.|+..-|..+.++|++.|.|+.
T Consensus 102 tfngHK~AVt~l~fd~~G~rlaSGskD---------t~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~ 172 (888)
T KOG0306|consen 102 TFNGHKAAVTTLKFDKIGTRLASGSKD---------TDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSM 172 (888)
T ss_pred eecccccceEEEEEcccCceEeecCCC---------ccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCce
Confidence 345788889999999998766655433 33445555666778899999999999999998899999999999
Q ss_pred EEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC------------------------CCce--
Q 048801 267 VKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD------------------------GLPI-- 320 (1715)
Q Consensus 267 IrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t------------------------g~~l-- 320 (1715)
|++||+++..+..+.-.|.+.|+.+++.+ +.+++++.|+.++||++.. ++.+
T Consensus 173 iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l 250 (888)
T KOG0306|consen 173 IKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINL 250 (888)
T ss_pred EEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEE
Confidence 99999999999999999999999999987 7899999999999999810 0000
Q ss_pred --------------------------------------------------------------------------------
Q 048801 321 -------------------------------------------------------------------------------- 320 (1715)
Q Consensus 321 -------------------------------------------------------------------------------- 320 (1715)
T Consensus 251 ~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~ 330 (888)
T KOG0306|consen 251 VTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTP 330 (888)
T ss_pred eecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEe
Confidence
Q ss_pred ------------------------------------EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCC
Q 048801 321 ------------------------------------SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQY 364 (1715)
Q Consensus 321 ------------------------------------~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~ 364 (1715)
..+.||...|.+++|+.+.. .+++ +..+.|+||+..+.++
T Consensus 331 ~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~---~~~S-ga~~SikiWn~~t~kc 406 (888)
T KOG0306|consen 331 SGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSI---LLAS-GAGESIKIWNRDTLKC 406 (888)
T ss_pred cCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCce---eeee-cCCCcEEEEEccCcce
Confidence 01235777788888888764 3444 4567899999999998
Q ss_pred cceecCCC---------CCCCccCccCC------CCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCC
Q 048801 365 SPRIYLPK---------PPDAITGKSNV------PSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 365 l~~i~~~~---------~~~~i~g~~~~------~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~ 429 (1715)
+.++.... ....+.|.... ............|.+.|++++.+||+..+++|+.|.+|++||..--
T Consensus 407 iRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~ 486 (888)
T KOG0306|consen 407 IRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLV 486 (888)
T ss_pred eEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEE
Confidence 87765431 11111111000 0011123344578999999999999999999999999999998532
Q ss_pred CccCCCCCceeee----eecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCC
Q 048801 430 SVEDSEQPIHELD----VLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 505 (1715)
Q Consensus 430 ~~~~~~~~~~~l~----~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t 505 (1715)
.. ..+...+.+. ..-.-.+.|.|+.++|++ .+|+.+--|.+++||-+++
T Consensus 487 ~~-~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg--------------------------k~LaVsLLdnTVkVyflDt 539 (888)
T KOG0306|consen 487 VS-VPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG--------------------------KLLAVSLLDNTVKVYFLDT 539 (888)
T ss_pred ec-cCcccceeeeeccceEEeccccEEEEEEcCCC--------------------------cEEEEEeccCeEEEEEecc
Confidence 11 0000001010 111235689999999997 7999999999999998886
Q ss_pred CccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 048801 506 RRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG 585 (1715)
Q Consensus 506 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g 585 (1715)
-+ ....+.+|.-+|.|+.+|||++.++||+.|.+|+||-+.-|.|.+.+-+
T Consensus 540 lK-----------------------------FflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA 590 (888)
T KOG0306|consen 540 LK-----------------------------FFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA 590 (888)
T ss_pred ee-----------------------------eeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc
Confidence 32 2345788999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 586 HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 586 H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
|.+.|.++.|.| ...++.|+|.||.|+-||-...++++.+.+|+..|++++.+|+|.++++++.|..|++|.....
T Consensus 591 HdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 591 HDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred ccCceeEEEEcc-cceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence 999999999999 7889999999999999999999999999999999999999999999999999999999997653
No 27
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=8.4e-31 Score=298.92 Aligned_cols=285 Identities=18% Similarity=0.263 Sum_probs=250.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCC
Q 048801 284 HEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQ 363 (1715)
Q Consensus 284 Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~ 363 (1715)
-...|..|.|.|+|+.|++|+..|.+.+|+..+......+..|..+|.++.|++++. +++||+.+|.|++|+.....
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~---wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGT---WMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCC---EEEEcCCCceEEecccchhh
Confidence 355899999999999999999999999999866555556778999999999999998 89999999999999876432
Q ss_pred CcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeee
Q 048801 364 YSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV 443 (1715)
Q Consensus 364 ~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~ 443 (1715)
. . .....|...|++++|+|+...|++++.||+|+|||.... ++-..
T Consensus 172 V-k------------------------~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~---------kee~v 217 (464)
T KOG0284|consen 172 V-K------------------------IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP---------KEERV 217 (464)
T ss_pred h-H------------------------HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC---------chhhe
Confidence 1 1 111234578999999999999999999999999999764 33456
Q ss_pred ecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccC
Q 048801 444 LSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKV 523 (1715)
Q Consensus 444 l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~ 523 (1715)
+.+|.-.|.++.|+|.. ..|++++.|..|++||.+++.
T Consensus 218 L~GHgwdVksvdWHP~k--------------------------gLiasgskDnlVKlWDprSg~---------------- 255 (464)
T KOG0284|consen 218 LRGHGWDVKSVDWHPTK--------------------------GLIASGSKDNLVKLWDPRSGS---------------- 255 (464)
T ss_pred eccCCCCcceeccCCcc--------------------------ceeEEccCCceeEeecCCCcc----------------
Confidence 79999999999999975 799999999999999999754
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEE
Q 048801 524 PPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIA 603 (1715)
Q Consensus 524 ~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lL 603 (1715)
++..+..|...|..+.|++++++|++++.|..++++|+++.+.+.++++|...|++++|+|....+|
T Consensus 256 -------------cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lf 322 (464)
T KOG0284|consen 256 -------------CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLF 322 (464)
T ss_pred -------------hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccce
Confidence 5566788999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCceEEEEE-cccceEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 604 MSAGYDGRTIVWDIWEGTPIRIYE-IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 604 aSgs~DGtI~VWDl~tgk~l~tl~-~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
++||.||.|..|.+...+++..+. +|...|++++|+|=|..|++|+.|..+++|.-.
T Consensus 323 tsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 323 TSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 999999999999998666655543 578899999999999999999999999999753
No 28
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.5e-29 Score=272.29 Aligned_cols=294 Identities=23% Similarity=0.377 Sum_probs=247.2
Q ss_pred ceeEEEEcCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCC---CcEEEEe-cCCCCCeEEEEECCCCCEEEEEeCCC
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRS-GRFVITGSDDRLVKIWSMET---AFCLASC-RGHEGDITDLAVSSNNTLVASASNDF 307 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpD-G~~LaTGS~DGtIrIWDl~t---gk~l~tL-~gHs~~VtsLafSpDg~lLASGS~DG 307 (1715)
+..++.+.||.+.|..++|+|- |..|||||.|..|+||++.. -.+...+ .+|...|..++|+|.|++||+||.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4567889999999999999998 89999999999999999885 3344444 37999999999999999999999999
Q ss_pred eeEEEECCCC--CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCC
Q 048801 308 VIRVWRLPDG--LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 308 tIrVWDl~tg--~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
++.||.-..+ +++.+|.||...|.|++|+++|. +|++++.|..|-||.+..+.....
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~---~LATCSRDKSVWiWe~deddEfec------------------ 142 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN---YLATCSRDKSVWIWEIDEDDEFEC------------------ 142 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCC---EEEEeeCCCeEEEEEecCCCcEEE------------------
Confidence 9999986644 67899999999999999999998 999999999999999875443222
Q ss_pred CCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccc
Q 048801 386 NNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~ 465 (1715)
......|...|..+.|+|...+|++++.|.+|++|.-.. .....+...+.+|.+.|.+++|.+.|
T Consensus 143 ----~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~------dddW~c~~tl~g~~~TVW~~~F~~~G----- 207 (312)
T KOG0645|consen 143 ----IAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED------DDDWECVQTLDGHENTVWSLAFDNIG----- 207 (312)
T ss_pred ----EeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecC------CCCeeEEEEecCccceEEEEEecCCC-----
Confidence 233466788899999999999999999999999998762 23367789999999999999999987
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~ 545 (1715)
..|++++.|++++||...+. ....|.
T Consensus 208 ---------------------~rl~s~sdD~tv~Iw~~~~~---------------------------------~~~~~s 233 (312)
T KOG0645|consen 208 ---------------------SRLVSCSDDGTVSIWRLYTD---------------------------------LSGMHS 233 (312)
T ss_pred ---------------------ceEEEecCCcceEeeeeccC---------------------------------cchhcc
Confidence 79999999999999965421 012356
Q ss_pred CCeeEEEeCCCCCEEEEEecCCeEEEEECCCC------ceEE-EEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 546 RGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG------SLVH-SLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg------~~l~-tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
..+..++|. ...|++++.|+.|+||.-... +++. .-..|...|++++|.|....+|++|+.||.|++|.+.
T Consensus 234 r~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 234 RALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 678889998 668999999999999976542 1121 3357889999999999657899999999999999874
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=3.3e-29 Score=270.71 Aligned_cols=295 Identities=16% Similarity=0.281 Sum_probs=254.9
Q ss_pred ccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--EEEEecCCCCCeEEEEE
Q 048801 216 VCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF--CLASCRGHEGDITDLAV 293 (1715)
Q Consensus 216 i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk--~l~tL~gHs~~VtsLaf 293 (1715)
+.++.|+.....|-..++.+..+++...+.|+.+.+.||++.||+|+. ..|++||+.++. ++.++.+|+..|+++.|
T Consensus 13 LvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF 91 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGF 91 (311)
T ss_pred EEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEE
Confidence 445677778877888899999999999999999999999999999975 589999998774 58999999999999999
Q ss_pred CCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCC
Q 048801 294 SSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKP 373 (1715)
Q Consensus 294 SpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~ 373 (1715)
..+|+++++|+.||+++|||++...+.+.+. |..+|+++..+|+.. .|++|..+|.|++||+....+...+. |.
T Consensus 92 ~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQt---eLis~dqsg~irvWDl~~~~c~~~li-Pe- 165 (311)
T KOG0315|consen 92 QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQT---ELISGDQSGNIRVWDLGENSCTHELI-PE- 165 (311)
T ss_pred eecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcc---eEEeecCCCcEEEEEccCCccccccC-CC-
Confidence 9999999999999999999999976666665 889999999999987 89999999999999998775543321 11
Q ss_pred CCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeE
Q 048801 374 PDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNY 453 (1715)
Q Consensus 374 ~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~s 453 (1715)
....|.+++..|||.+++.+...|.+++|++.+.. ...+..++..+..|++.+..
T Consensus 166 ----------------------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~---~~s~l~P~~k~~ah~~~il~ 220 (311)
T KOG0315|consen 166 ----------------------DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ---TASELEPVHKFQAHNGHILR 220 (311)
T ss_pred ----------------------CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCC---ccccceEhhheecccceEEE
Confidence 13458999999999999999999999999998743 34456667789999999999
Q ss_pred EEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCC
Q 048801 454 VQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPP 533 (1715)
Q Consensus 454 Lafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 533 (1715)
+.++|++ ++|++++.|.+++||++++-
T Consensus 221 C~lSPd~--------------------------k~lat~ssdktv~iwn~~~~--------------------------- 247 (311)
T KOG0315|consen 221 CLLSPDV--------------------------KYLATCSSDKTVKIWNTDDF--------------------------- 247 (311)
T ss_pred EEECCCC--------------------------cEEEeecCCceEEEEecCCc---------------------------
Confidence 9999987 89999999999999998752
Q ss_pred CCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEc
Q 048801 534 RGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVH 596 (1715)
Q Consensus 534 ~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafS 596 (1715)
-.....+.+|...+..++||.||.||+||+.|+.+++|++..++.++.+.+|.....|++..
T Consensus 248 -~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 248 -FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred -eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 01223567788899999999999999999999999999999999999999998887777653
No 30
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.6e-30 Score=302.63 Aligned_cols=296 Identities=22% Similarity=0.358 Sum_probs=252.4
Q ss_pred ceeEEEEcCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCC-CcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeE
Q 048801 233 MQNIKKLRGHRDAVYCAIFDR-SGRFVITGSDDRLVKIWSMET-AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIR 310 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSp-DG~~LaTGS~DGtIrIWDl~t-gk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIr 310 (1715)
.+.+.++.||+..|+++.|.| .+.+|++|+.|+.|+||++-. +.+++++.||..+|.+++|+.+|..++|++.|+.|+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 456888999999999999999 899999999999999999866 899999999999999999999999999999999999
Q ss_pred EEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCC
Q 048801 311 VWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPS 390 (1715)
Q Consensus 311 VWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~ 390 (1715)
+||+++|+++..+. ....++|+.|.|++.. .+++|+.|+.|+.||+++++.+..+.
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~~n--~fl~G~sd~ki~~wDiRs~kvvqeYd--------------------- 339 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDNQN--IFLVGGSDKKIRQWDIRSGKVVQEYD--------------------- 339 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCCCc--EEEEecCCCcEEEEeccchHHHHHHH---------------------
Confidence 99999999999887 4567899999999853 79999999999999999998766542
Q ss_pred CCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccc
Q 048801 391 SSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDA 470 (1715)
Q Consensus 391 ~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~ 470 (1715)
.|-+.|..+.|-++|+.+++.+.|+.++||+...+.. .+.+. ..+.....++..+|.+
T Consensus 340 ----~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~------ik~i~--~~~~hsmP~~~~~P~~---------- 397 (503)
T KOG0282|consen 340 ----RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP------IKNIA--DPEMHTMPCLTLHPNG---------- 397 (503)
T ss_pred ----hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc------chhhc--chhhccCcceecCCCC----------
Confidence 2456699999999999999999999999999976421 22222 2233356678888876
Q ss_pred ccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC--CCe
Q 048801 471 FKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP--RGV 548 (1715)
Q Consensus 471 ~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~--~~V 548 (1715)
..++.-+.|+.|.++.+...- .......+.+|. +--
T Consensus 398 ----------------~~~~aQs~dN~i~ifs~~~~~--------------------------r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 398 ----------------KWFAAQSMDNYIAIFSTVPPF--------------------------RLNKKKRFEGHSVAGYS 435 (503)
T ss_pred ----------------CeehhhccCceEEEEeccccc--------------------------ccCHhhhhcceeccCce
Confidence 789999999999999765311 011222334442 345
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 549 NMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 549 tslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
..+.|||||.+|++|..||.+.+||..+-+++..+.+|..++..+.|+|.....+|||+.||.|++|+
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 67899999999999999999999999999999999999999999999998889999999999999996
No 31
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=1.5e-29 Score=283.95 Aligned_cols=292 Identities=19% Similarity=0.269 Sum_probs=253.6
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEE
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRV 311 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrV 311 (1715)
..++.+.+.||.+.|.||++.|...+++||+.|++|+|||+.+|++..++.||-..|..+++|+-..||++++.|+.|+.
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 312 WRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 312 WDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
||++..+.++.+.||-..|.|++.+|... .|++|+.|.+++|||+++...+..+
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTld---vl~t~grDst~RvWDiRtr~~V~~l----------------------- 273 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTLD---VLVTGGRDSTIRVWDIRTRASVHVL----------------------- 273 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccce---eEEecCCcceEEEeeecccceEEEe-----------------------
Confidence 99999999999999999999999999876 8999999999999999987654332
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccc
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAF 471 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~ 471 (1715)
.+|...|..+.+.|-...+++|+.|++|++||++.++ .+..+..|...|.+++.+|..
T Consensus 274 --~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk---------t~~tlt~hkksvral~lhP~e----------- 331 (460)
T KOG0285|consen 274 --SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK---------TMITLTHHKKSVRALCLHPKE----------- 331 (460)
T ss_pred --cCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc---------eeEeeecccceeeEEecCCch-----------
Confidence 4568889999999988889999999999999998753 477888999999999999974
Q ss_pred cccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEE
Q 048801 472 KEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMI 551 (1715)
Q Consensus 472 ~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsl 551 (1715)
..|++++.| .|+.|++..+ ..+..+.+|...|+++
T Consensus 332 ---------------~~fASas~d-nik~w~~p~g-----------------------------~f~~nlsgh~~iintl 366 (460)
T KOG0285|consen 332 ---------------NLFASASPD-NIKQWKLPEG-----------------------------EFLQNLSGHNAIINTL 366 (460)
T ss_pred ---------------hhhhccCCc-cceeccCCcc-----------------------------chhhccccccceeeee
Confidence 567777666 5788877643 3344567788899999
Q ss_pred EeCCCCCEEEEEecCCeEEEEECCCCceEEEEe--------cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 552 VWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT--------GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 552 afSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~--------gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
+...|| ++++|+.+|.|.+||..+|-..+.+. .....|++.+|.. .+..|+||..|.+|++|.-.
T Consensus 367 ~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDk-tg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 367 SVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDK-TGSRLITGEADKTIKMYKED 439 (460)
T ss_pred eeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecc-cCceEEeccCCcceEEEecc
Confidence 998877 77789999999999999987655442 1245688899987 66777899999999999743
No 32
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=9.3e-31 Score=291.69 Aligned_cols=278 Identities=24% Similarity=0.442 Sum_probs=239.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceE
Q 048801 242 HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS 321 (1715)
Q Consensus 242 H~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~ 321 (1715)
....|+|+.+. ...+++|..|++|+|||..+..++..|.||++.|.|+.| +.+.|++|+.|.+|+|||+++|+++.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhh
Confidence 45689999996 447999999999999999999999999999999999998 56799999999999999999999999
Q ss_pred EEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCccee
Q 048801 322 VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQIL 401 (1715)
Q Consensus 322 ~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vt 401 (1715)
++.+|...|..+.|+.. ++++++.|.++.+||+.....+.. .....+|...|.
T Consensus 272 tlihHceaVLhlrf~ng-----~mvtcSkDrsiaVWdm~sps~it~----------------------rrVLvGHrAaVN 324 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSNG-----YMVTCSKDRSIAVWDMASPTDITL----------------------RRVLVGHRAAVN 324 (499)
T ss_pred HHhhhcceeEEEEEeCC-----EEEEecCCceeEEEeccCchHHHH----------------------HHHHhhhhhhee
Confidence 99999999999999874 899999999999999875432111 122345677789
Q ss_pred EEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccC
Q 048801 402 CCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKN 481 (1715)
Q Consensus 402 slafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~ 481 (1715)
.+.|+ .+++++++.|.+|++|++.+. +.+.++.+|...|.|+++..
T Consensus 325 vVdfd--~kyIVsASgDRTikvW~~st~---------efvRtl~gHkRGIAClQYr~----------------------- 370 (499)
T KOG0281|consen 325 VVDFD--DKYIVSASGDRTIKVWSTSTC---------EFVRTLNGHKRGIACLQYRD----------------------- 370 (499)
T ss_pred eeccc--cceEEEecCCceEEEEeccce---------eeehhhhcccccceehhccC-----------------------
Confidence 99985 459999999999999999884 56889999999999998864
Q ss_pred CcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEE
Q 048801 482 SWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL 561 (1715)
Q Consensus 482 s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~La 561 (1715)
.++++|+.|.+|++||+..| .++..+.+|+.-|.|+.| |.+.|+
T Consensus 371 -----rlvVSGSSDntIRlwdi~~G-----------------------------~cLRvLeGHEeLvRciRF--d~krIV 414 (499)
T KOG0281|consen 371 -----RLVVSGSSDNTIRLWDIECG-----------------------------ACLRVLEGHEELVRCIRF--DNKRIV 414 (499)
T ss_pred -----eEEEecCCCceEEEEecccc-----------------------------HHHHHHhchHHhhhheee--cCceee
Confidence 78999999999999999864 455667889999999999 678999
Q ss_pred EEecCCeEEEEECCCCc---------eEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceE
Q 048801 562 AAIMDCRICVWNAVDGS---------LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPI 623 (1715)
Q Consensus 562 Tgs~DGtI~IWDl~sg~---------~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l 623 (1715)
+|+.||+|+|||+..+. ++.++..|.+.|..+.| +...+++++.|.+|.|||+.++-+-
T Consensus 415 SGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF---D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 415 SGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF---DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred eccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee---cceEEEeccCCCeEEEEEcCCCCcc
Confidence 99999999999998754 34566779999999999 5577889999999999999776543
No 33
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=5.2e-29 Score=312.47 Aligned_cols=292 Identities=32% Similarity=0.529 Sum_probs=252.8
Q ss_pred EEEEcCC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--EEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 236 IKKLRGH-RDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF--CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 236 l~~L~GH-~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk--~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
...+.+| ...|+|+.|+++|++|++++.|+.|++|++.+++ .+..+.+|...|.+++|+|++.+|++|+.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 5556565 8899999999999999999999999999998888 788889999999999999999999999999999999
Q ss_pred EC-CCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 313 RL-PDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 313 Dl-~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
|+ ..+..++++.+|...|++++|+|++. .+++|+.|++|+|||++++++...+
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g~---~i~Sgs~D~tvriWd~~~~~~~~~l----------------------- 284 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDGN---LLVSGSDDGTVRIWDVRTGECVRKL----------------------- 284 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCCC---EEEEecCCCcEEEEeccCCeEEEee-----------------------
Confidence 99 56689999999999999999999996 8999999999999999987765544
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCC--eeEEEEccCcccccccccc
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEND--VNYVQFSGCAVASRSAMSD 469 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~--V~sLafspdg~as~~~~~~ 469 (1715)
..|...|++++|+++|.+|++++.|+.|+|||+.++... ++..+.++... +++++|+|++
T Consensus 285 --~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~-------~~~~~~~~~~~~~~~~~~fsp~~--------- 346 (456)
T KOG0266|consen 285 --KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL-------CLKLLSGAENSAPVTSVQFSPNG--------- 346 (456)
T ss_pred --eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee-------eeecccCCCCCCceeEEEECCCC---------
Confidence 346778999999999999999999999999999886421 34455555555 9999999987
Q ss_pred cccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCC---
Q 048801 470 AFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPR--- 546 (1715)
Q Consensus 470 ~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~--- 546 (1715)
.+|++++.|+.+++||+..+.... ...+|..
T Consensus 347 -----------------~~ll~~~~d~~~~~w~l~~~~~~~-----------------------------~~~~~~~~~~ 380 (456)
T KOG0266|consen 347 -----------------KYLLSASLDRTLKLWDLRSGKSVG-----------------------------TYTGHSNLVR 380 (456)
T ss_pred -----------------cEEEEecCCCeEEEEEccCCccee-----------------------------eecccCCcce
Confidence 899999999999999998754322 2222332
Q ss_pred CeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecC-CCCeEEEEEccCCCcEEEEEe--CCCcEEEEECC
Q 048801 547 GVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH-SASSYVLDVHPFNPRIAMSAG--YDGRTIVWDIW 618 (1715)
Q Consensus 547 ~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH-~~~V~sLafSP~dg~lLaSgs--~DGtI~VWDl~ 618 (1715)
.+.+...++.+.++++|+.|+.|++|++.++..+..+.+| ...+..+.++| ...++++++ .|+.|++|...
T Consensus 381 ~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~-~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 381 CIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP-TENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC-CcCeeeecCcCCCceEEEecCC
Confidence 3444556889999999999999999999999999999999 89999999999 778888888 78999999753
No 34
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=2.5e-30 Score=295.06 Aligned_cols=282 Identities=21% Similarity=0.358 Sum_probs=244.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceE
Q 048801 242 HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS 321 (1715)
Q Consensus 242 H~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~ 321 (1715)
-...|..|.|.|+|+.|+||+..|.+.+|+..+......+..|..+|+++.|+++|.+++||+.+|.|++|+..-. .+.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk 173 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVK 173 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhH
Confidence 3567999999999999999999999999998655555567889999999999999999999999999999997543 445
Q ss_pred EEeCC-CCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcce
Q 048801 322 VLRGH-TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI 400 (1715)
Q Consensus 322 ~L~gH-~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~V 400 (1715)
.+.+| ...|++++|+|... .+++++.||+|+|||....+... ...+|+-.|
T Consensus 174 ~~~ahh~eaIRdlafSpnDs---kF~t~SdDg~ikiWdf~~~kee~-------------------------vL~GHgwdV 225 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDS---KFLTCSDDGTIKIWDFRMPKEER-------------------------VLRGHGWDV 225 (464)
T ss_pred HhhHhhhhhhheeccCCCCc---eeEEecCCCeEEEEeccCCchhh-------------------------eeccCCCCc
Confidence 55544 48999999999776 89999999999999987554322 235678889
Q ss_pred eEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccccccc
Q 048801 401 LCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFK 480 (1715)
Q Consensus 401 tslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~ 480 (1715)
.|++|+|...+||+|+.|..|++||.+++ .++.++.+|...|..+.|++++
T Consensus 226 ksvdWHP~kgLiasgskDnlVKlWDprSg---------~cl~tlh~HKntVl~~~f~~n~-------------------- 276 (464)
T KOG0284|consen 226 KSVDWHPTKGLIASGSKDNLVKLWDPRSG---------SCLATLHGHKNTVLAVKFNPNG-------------------- 276 (464)
T ss_pred ceeccCCccceeEEccCCceeEeecCCCc---------chhhhhhhccceEEEEEEcCCC--------------------
Confidence 99999999999999999999999999986 4588899999999999999986
Q ss_pred CCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CCCE
Q 048801 481 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRF 559 (1715)
Q Consensus 481 ~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~ 559 (1715)
++|++++.|..++++|+++- ..+..+.+|...|++++|+| ...+
T Consensus 277 ------N~Llt~skD~~~kv~DiR~m-----------------------------kEl~~~r~Hkkdv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 277 ------NWLLTGSKDQSCKVFDIRTM-----------------------------KELFTYRGHKKDVTSLTWHPLNESL 321 (464)
T ss_pred ------CeeEEccCCceEEEEehhHh-----------------------------HHHHHhhcchhhheeeccccccccc
Confidence 89999999999999999852 23456788999999999999 4567
Q ss_pred EEEEecCCeEEEEECCCCceEEEE-ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 560 VLAAIMDCRICVWNAVDGSLVHSL-TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 560 LaTgs~DGtI~IWDl~sg~~l~tL-~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
|.+|+.||.|..|.+...+++..+ .+|...|++++|+| =|.+|++|+.|.++++|.-
T Consensus 322 ftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP-lGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 322 FTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP-LGHILATGSNDRTVRFWTR 379 (464)
T ss_pred eeeccCCCceEEEeccccccccCCCcccccceeeeeccc-cceeEeecCCCcceeeecc
Confidence 888999999999999866666555 48999999999999 7899999999999999974
No 35
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=1.7e-28 Score=269.58 Aligned_cols=299 Identities=21% Similarity=0.290 Sum_probs=228.6
Q ss_pred CCCCCceeeeeeccccCcc-cccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 048801 189 HMQADQVHGLSLREIGGGF-KKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLV 267 (1715)
Q Consensus 189 ~~~~d~V~~ls~~~~g~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtI 267 (1715)
..|.+.|..++....+..+ ...++...+...- ........+..++.|.||...|..++.++||++.++++.|+++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~----L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWK----LTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEE----eccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 3566777777665543221 1222222221111 1112345567899999999999999999999999999999999
Q ss_pred EEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCC--CCCeEEEEecCCCCcceEE
Q 048801 268 KIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGH--TGAVTAIAFSPRPSAIYQL 345 (1715)
Q Consensus 268 rIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH--~~~VtsLafSPdg~~~~~L 345 (1715)
++||+.+|+..+.|.||...|.+++|++|++.|++|+.|.+|.+|++-. .+..++..+ .+.|+|+.|+|+.... +|
T Consensus 88 rlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p-~I 165 (315)
T KOG0279|consen 88 RLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNP-II 165 (315)
T ss_pred EEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCc-EE
Confidence 9999999999999999999999999999999999999999999999854 445555433 7899999999985333 89
Q ss_pred EEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEe
Q 048801 346 LSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWS 425 (1715)
Q Consensus 346 aSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWD 425 (1715)
++++.|++|++||+++-+.... ..+|.+.++.+++||||.++++|+.||.+.+||
T Consensus 166 vs~s~DktvKvWnl~~~~l~~~-------------------------~~gh~~~v~t~~vSpDGslcasGgkdg~~~Lwd 220 (315)
T KOG0279|consen 166 VSASWDKTVKVWNLRNCQLRTT-------------------------FIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWD 220 (315)
T ss_pred EEccCCceEEEEccCCcchhhc-------------------------cccccccEEEEEECCCCCEEecCCCCceEEEEE
Confidence 9999999999999987654322 234788899999999999999999999999999
Q ss_pred CCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCC
Q 048801 426 ACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 505 (1715)
Q Consensus 426 l~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t 505 (1715)
++.++ .+.. ..|...|.+++|+|+. +.+....+..|+|||+.+
T Consensus 221 L~~~k---------~lys-l~a~~~v~sl~fspnr---------------------------ywL~~at~~sIkIwdl~~ 263 (315)
T KOG0279|consen 221 LNEGK---------NLYS-LEAFDIVNSLCFSPNR---------------------------YWLCAATATSIKIWDLES 263 (315)
T ss_pred ccCCc---------eeEe-ccCCCeEeeEEecCCc---------------------------eeEeeccCCceEEEeccc
Confidence 98753 2333 4577899999999973 666666777899999998
Q ss_pred CccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECC
Q 048801 506 RRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV 575 (1715)
Q Consensus 506 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~ 575 (1715)
+.++..+.. ... + + ..........+++|++||..|++|..|+.|++|.+.
T Consensus 264 ~~~v~~l~~-------d~~----------g-~--s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 264 KAVVEELKL-------DGI----------G-P--SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhhhhhccc-------ccc----------c-c--ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 765433211 000 0 0 111122345678999999999999999999999864
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.4e-29 Score=292.65 Aligned_cols=288 Identities=20% Similarity=0.316 Sum_probs=254.5
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC
Q 048801 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP 315 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~ 315 (1715)
.++|..|+..|.||.|+|...+++++-.+|.|.||+.++...++.+.-..-+|.+..|-+-.+++++|+.|..|+||+..
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 34566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCC
Q 048801 316 DGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL 395 (1715)
Q Consensus 316 tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~ 395 (1715)
+++.+..+..|..-|.||+.+|..+ ++++++.|-+|++||...+=.. .....+
T Consensus 86 t~ekV~~FeAH~DyIR~iavHPt~P---~vLtsSDDm~iKlW~we~~wa~------------------------~qtfeG 138 (794)
T KOG0276|consen 86 TGEKVKTFEAHSDYIRSIAVHPTLP---YVLTSSDDMTIKLWDWENEWAC------------------------EQTFEG 138 (794)
T ss_pred cceeeEEeeccccceeeeeecCCCC---eEEecCCccEEEEeeccCceee------------------------eeEEcC
Confidence 9999999999999999999999988 8999999999999999754211 223456
Q ss_pred CCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccc
Q 048801 396 QSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEE 474 (1715)
Q Consensus 396 h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~ 474 (1715)
|.+.|.+++|+| |.+.||+++-|++|+||.+... .+..++.+|...|+|+.|-+.+.
T Consensus 139 H~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~---------~~nfTl~gHekGVN~Vdyy~~gd------------- 196 (794)
T KOG0276|consen 139 HEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP---------HPNFTLEGHEKGVNCVDYYTGGD------------- 196 (794)
T ss_pred cceEEEEEEecCCCccceeeeeccccEEEEEcCCC---------CCceeeeccccCcceEEeccCCC-------------
Confidence 899999999999 5689999999999999999653 44678899999999999988651
Q ss_pred ccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC
Q 048801 475 NVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS 554 (1715)
Q Consensus 475 ~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS 554 (1715)
..+|++|+.|.+|+|||..+.. +++++.+|...|..++|.
T Consensus 197 -----------kpylIsgaDD~tiKvWDyQtk~-----------------------------CV~TLeGHt~Nvs~v~fh 236 (794)
T KOG0276|consen 197 -----------KPYLISGADDLTIKVWDYQTKS-----------------------------CVQTLEGHTNNVSFVFFH 236 (794)
T ss_pred -----------cceEEecCCCceEEEeecchHH-----------------------------HHHHhhcccccceEEEec
Confidence 3699999999999999998743 566788999999999999
Q ss_pred CCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 048801 555 LDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTI 613 (1715)
Q Consensus 555 PDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~ 613 (1715)
|.-.+|++|+.||+|+||+..+-++..++.-.-+.|+|++-.+ +...++.|...|.|.
T Consensus 237 p~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k-~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 237 PELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK-GDGKIAVGFDEGSVT 294 (794)
T ss_pred CCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC-CCCeEEEeccCCcEE
Confidence 9999999999999999999999988888887788899999888 555566676666553
No 37
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.4e-28 Score=278.32 Aligned_cols=337 Identities=20% Similarity=0.290 Sum_probs=275.5
Q ss_pred CCCCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 048801 190 MQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKI 269 (1715)
Q Consensus 190 ~~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrI 269 (1715)
.|.+.|-++++.+. .+..+++..+-..-.|...+...+..+.||.+.|+|+.|+.||.+||||+.+|.|+|
T Consensus 62 ~H~~svFavsl~P~---------~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPN---------NNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred hcCCceEEEEeCCC---------CceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence 45666666666542 233344444333344556677788999999999999999999999999999999999
Q ss_pred EeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec
Q 048801 270 WSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS 349 (1715)
Q Consensus 270 WDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS 349 (1715)
|.+.++.....+..-...|.=+.|+|-+.+|++|+.||.|.+|.+.++...+.+.||..++++=.|.|+|+ .++++.
T Consensus 133 ~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK---r~~tgy 209 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK---RILTGY 209 (399)
T ss_pred EEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc---eEEEEe
Confidence 99999999988877778899999999999999999999999999999888999999999999999999998 899999
Q ss_pred CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCC
Q 048801 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 350 ~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~ 429 (1715)
.||+|++|++.+++.+..+... ......|+.++..+..++.|..++.+++-+..++
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~------------------------e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg 265 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQA------------------------EGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG 265 (399)
T ss_pred cCceEEEEecCCCceeEEeccc------------------------ccCcCCccccccccceeEeccCCccEEEEccccc
Confidence 9999999999999766554321 1234678899999999999999999999988887
Q ss_pred CccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccC
Q 048801 430 SVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH 509 (1715)
Q Consensus 430 ~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~ 509 (1715)
++.....+ ........+...+.||.+.|... .-.+.++|+-||+|.|||+...+
T Consensus 266 KVv~~~n~-~~~~l~~~~e~~~esve~~~~ss-----------------------~lpL~A~G~vdG~i~iyD~a~~~-- 319 (399)
T KOG0296|consen 266 KVVNCNNG-TVPELKPSQEELDESVESIPSSS-----------------------KLPLAACGSVDGTIAIYDLAAST-- 319 (399)
T ss_pred eEEEecCC-CCccccccchhhhhhhhhccccc-----------------------ccchhhcccccceEEEEecccch--
Confidence 65332221 11122335566666776665421 01578999999999999997522
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCC
Q 048801 510 GKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSAS 589 (1715)
Q Consensus 510 ~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~ 589 (1715)
.+....|+.+|+.+.|-+ ..+|++++.+|.|++||.++|+++.++.||...
T Consensus 320 ----------------------------~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~ 370 (399)
T KOG0296|consen 320 ----------------------------LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG 370 (399)
T ss_pred ----------------------------hheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchh
Confidence 334566888999999998 789999999999999999999999999999999
Q ss_pred eEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 590 SYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 590 V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
|.+++++| +.++++|++.|++.+||++.
T Consensus 371 Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 371 ILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 99999999 88999999999999999863
No 38
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=1.1e-29 Score=310.86 Aligned_cols=278 Identities=21% Similarity=0.297 Sum_probs=234.6
Q ss_pred EecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEec
Q 048801 280 SCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359 (1715)
Q Consensus 280 tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl 359 (1715)
++......++|..|++|+.+||.|..|..|++|.+... .++.+++ ..+... +=+.+.|-.+.+.|.
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~-------~~~l~~------~d~~sad~~~~~~D~ 438 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKD-------ASDLSN------IDTESADVDVDMLDD 438 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccc-------hhhhcc------ccccccchhhhhccc
Confidence 34434557999999999999999999999999998654 3333331 112221 113333333444444
Q ss_pred CCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCce
Q 048801 360 RYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIH 439 (1715)
Q Consensus 360 ~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~ 439 (1715)
..+.. .....+|.++|..+.|+|+.++|++++.|+++|+|.+.+. .
T Consensus 439 ~~~~~-------------------------~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~---------s 484 (707)
T KOG0263|consen 439 DSSGT-------------------------SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW---------S 484 (707)
T ss_pred cCCce-------------------------eEEeecCCCceeeeeecccccceeeccCCcceeeeecccc---------e
Confidence 33221 2224568999999999999999999999999999999874 4
Q ss_pred eeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccc
Q 048801 440 ELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAY 519 (1715)
Q Consensus 440 ~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~ 519 (1715)
++-.+.||..+|..+.|+|.| -+|||++.|++.++|....
T Consensus 485 ~~V~y~GH~~PVwdV~F~P~G--------------------------yYFatas~D~tArLWs~d~-------------- 524 (707)
T KOG0263|consen 485 CLVIYKGHLAPVWDVQFAPRG--------------------------YYFATASHDQTARLWSTDH-------------- 524 (707)
T ss_pred eEEEecCCCcceeeEEecCCc--------------------------eEEEecCCCceeeeeeccc--------------
Confidence 577888999999999999987 6999999999999998764
Q ss_pred cccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCC
Q 048801 520 HLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFN 599 (1715)
Q Consensus 520 ~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~d 599 (1715)
..+.+.+.+|...|.|+.|+|+..|+++|+.|.+|++||+.+|..++.|.||.++|.+|+||| .
T Consensus 525 ---------------~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp-~ 588 (707)
T KOG0263|consen 525 ---------------NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP-C 588 (707)
T ss_pred ---------------CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC-C
Confidence 345667889999999999999999999999999999999999999999999999999999999 8
Q ss_pred CcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 600 PRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 600 g~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
|++|++|+.||.|.|||+.+|+++..+.+|.+.|.++.||.||..||+|+.|..|++||+..
T Consensus 589 Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 589 GRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 99999999999999999999999999999999999999999999999999999999999854
No 39
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.3e-29 Score=286.53 Aligned_cols=294 Identities=18% Similarity=0.320 Sum_probs=243.8
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC---CcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCee
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET---AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVI 309 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~t---gk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtI 309 (1715)
.+..++|..|++.|.-+.||++|+|||||+.|.+..||.+.. -++.+++.||..+|..+.||||.++|++++.|..+
T Consensus 214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~ 293 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL 293 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence 345677899999999999999999999999999999998753 35688999999999999999999999999999999
Q ss_pred EEEECCCCCceEEEe-CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCC
Q 048801 310 RVWRLPDGLPISVLR-GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNG 388 (1715)
Q Consensus 310 rVWDl~tg~~l~~L~-gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~ 388 (1715)
.+||+.+|.....+. +|...+.+++|.||+. .+++|+.|++|..||+..... ...
T Consensus 294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~---~~V~Gs~dr~i~~wdlDgn~~-~~W-------------------- 349 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF---RFVTGSPDRTIIMWDLDGNIL-GNW-------------------- 349 (519)
T ss_pred eeccCCcchhhhhcccCcCCCcceeEEccCCc---eeEecCCCCcEEEecCCcchh-hcc--------------------
Confidence 999999999887764 4568899999999997 799999999999999875431 111
Q ss_pred CCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccc
Q 048801 389 PSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMS 468 (1715)
Q Consensus 389 ~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~ 468 (1715)
.......|.+++.++||+++++.+.|..|++|+..+... . .+.....+|++++.+.++
T Consensus 350 ----~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d---------r-~lise~~~its~~iS~d~-------- 407 (519)
T KOG0293|consen 350 ----EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD---------R-GLISEEQPITSFSISKDG-------- 407 (519)
T ss_pred ----cccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh---------h-ccccccCceeEEEEcCCC--------
Confidence 011124589999999999999999999999999875321 1 133345689999999886
Q ss_pred ccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCC-
Q 048801 469 DAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG- 547 (1715)
Q Consensus 469 ~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~- 547 (1715)
+++++.-.+..+.+||+..... +..+.+|..+
T Consensus 408 ------------------k~~LvnL~~qei~LWDl~e~~l-----------------------------v~kY~Ghkq~~ 440 (519)
T KOG0293|consen 408 ------------------KLALVNLQDQEIHLWDLEENKL-----------------------------VRKYFGHKQGH 440 (519)
T ss_pred ------------------cEEEEEcccCeeEEeecchhhH-----------------------------HHHhhcccccc
Confidence 6888888899999999985332 2334444433
Q ss_pred -eeEEEeC-CCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC
Q 048801 548 -VNMIVWS-LDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 548 -VtslafS-PDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t 619 (1715)
|-.-||- .+..++++|+.|+.|+||+..+|+++.++.||...|++|+|+|.++.++|+||.||+|+||....
T Consensus 441 fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 441 FIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 3333554 35689999999999999999999999999999999999999999999999999999999998753
No 40
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=4.6e-30 Score=286.20 Aligned_cols=276 Identities=24% Similarity=0.389 Sum_probs=240.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCC
Q 048801 284 HEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQ 363 (1715)
Q Consensus 284 Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~ 363 (1715)
....|+|+.+ |...+++|..|.+|+|||..+..++..+.||++.|.|+.|... .|++|+.|.+|++||+.+++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r-----viisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER-----VIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce-----EEEecCCCceEEEEeccCCc
Confidence 4567999988 5668999999999999999999999999999999999999764 89999999999999999998
Q ss_pred CcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeee
Q 048801 364 YSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV 443 (1715)
Q Consensus 364 ~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~ 443 (1715)
.+.++ ..|...|..+.|+. .++++++.|.+|.|||+.... ...+...
T Consensus 269 ~l~tl-------------------------ihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps------~it~rrV 315 (499)
T KOG0281|consen 269 PLNTL-------------------------IHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPT------DITLRRV 315 (499)
T ss_pred hhhHH-------------------------hhhcceeEEEEEeC--CEEEEecCCceeEEEeccCch------HHHHHHH
Confidence 76554 23577799999964 489999999999999997643 2456678
Q ss_pred ecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccC
Q 048801 444 LSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKV 523 (1715)
Q Consensus 444 l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~ 523 (1715)
+.||...|+.+.|+. ++|++++.|.+|++|++.++.
T Consensus 316 LvGHrAaVNvVdfd~----------------------------kyIVsASgDRTikvW~~st~e---------------- 351 (499)
T KOG0281|consen 316 LVGHRAAVNVVDFDD----------------------------KYIVSASGDRTIKVWSTSTCE---------------- 351 (499)
T ss_pred Hhhhhhheeeecccc----------------------------ceEEEecCCceEEEEecccee----------------
Confidence 999999999999975 699999999999999998743
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEE
Q 048801 524 PPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIA 603 (1715)
Q Consensus 524 ~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lL 603 (1715)
.+..+.+|..+|.|+.+ .|+++++|+.|.+|++||+..|.+++.+.||..-|.++.| +...+
T Consensus 352 -------------fvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF---d~krI 413 (499)
T KOG0281|consen 352 -------------FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRI 413 (499)
T ss_pred -------------eehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee---cCcee
Confidence 45667889999998887 7899999999999999999999999999999999999999 55778
Q ss_pred EEEeCCCcEEEEECCCCc---------eEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 048801 604 MSAGYDGRTIVWDIWEGT---------PIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 604 aSgs~DGtI~VWDl~tgk---------~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe 663 (1715)
++|++||+|+|||+.++. |+.++..|.+.|..+.|. ...|++++.|..|.|||+..|-
T Consensus 414 VSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 414 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred eeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCC
Confidence 899999999999998753 455666688899999984 5679999999999999997763
No 41
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.8e-28 Score=262.99 Aligned_cols=287 Identities=23% Similarity=0.387 Sum_probs=236.3
Q ss_pred eeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 234 k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
+.+..|.+|+++|.++.|..||+|.+|++.|.+|++|+...|.+++++.+|...|.+++.+.|+..+++|+.|..|.+||
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCC
Q 048801 314 LPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSN 393 (1715)
Q Consensus 314 l~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~ 393 (1715)
+.+|+.++.+.+|.+.|+.++|+.+.. .+++|+.|.++++||.++....+
T Consensus 88 V~TGkv~Rr~rgH~aqVNtV~fNeesS---Vv~SgsfD~s~r~wDCRS~s~eP--------------------------- 137 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVNTVRFNEESS---VVASGSFDSSVRLWDCRSRSFEP--------------------------- 137 (307)
T ss_pred cccCeeeeecccccceeeEEEecCcce---EEEeccccceeEEEEcccCCCCc---------------------------
Confidence 999999999999999999999999877 89999999999999987543211
Q ss_pred CCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccc
Q 048801 394 GLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKE 473 (1715)
Q Consensus 394 ~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~ 473 (1715)
++.+....+.|.++..+.
T Consensus 138 -----------------------------------------------iQildea~D~V~Si~v~~--------------- 155 (307)
T KOG0316|consen 138 -----------------------------------------------IQILDEAKDGVSSIDVAE--------------- 155 (307)
T ss_pred -----------------------------------------------cchhhhhcCceeEEEecc---------------
Confidence 111111122344444432
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEe
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW 553 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtslaf 553 (1715)
..|++|+.||+++.||++.++.... . ...+|++++|
T Consensus 156 -------------heIvaGS~DGtvRtydiR~G~l~sD-----------------------------y--~g~pit~vs~ 191 (307)
T KOG0316|consen 156 -------------HEIVAGSVDGTVRTYDIRKGTLSSD-----------------------------Y--FGHPITSVSF 191 (307)
T ss_pred -------------cEEEeeccCCcEEEEEeecceeehh-----------------------------h--cCCcceeEEe
Confidence 4677777777777777775432111 1 2347999999
Q ss_pred CCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEcc-CCCcEEEEEeCCCcEEEEECCCCceEEEEEcccce
Q 048801 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHP-FNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFK 632 (1715)
Q Consensus 554 SPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP-~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~ 632 (1715)
++|++.+++++.|++|++.|-.+|+++..+.||...-+.+..+- .....+++|+.||.|++||+..+..+..+..+...
T Consensus 192 s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v 271 (307)
T KOG0316|consen 192 SKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV 271 (307)
T ss_pred cCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCce
Confidence 99999999999999999999999999999999988766554332 14578899999999999999999999999877766
Q ss_pred -EEEEEEcCCCCEEEEEeCCCeEEEE
Q 048801 633 -LVDGKFSPDGTSIVLSDDVGQIYLL 657 (1715)
Q Consensus 633 -V~svafSPDG~~LAsgs~DG~I~IW 657 (1715)
|.+++++|.-..|+++... .+..|
T Consensus 272 ~v~dl~~hp~~~~f~~A~~~-~~~~~ 296 (307)
T KOG0316|consen 272 IVTDLSCHPTMDDFITATGH-GDLFW 296 (307)
T ss_pred eEEeeecccCccceeEecCC-ceece
Confidence 7899999988878777654 34444
No 42
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=1.5e-27 Score=319.50 Aligned_cols=290 Identities=20% Similarity=0.305 Sum_probs=236.5
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----c----EEEEecCCCCCeEEEEECC-CCCEEEEEeCCCee
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA----F----CLASCRGHEGDITDLAVSS-NNTLVASASNDFVI 309 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg----k----~l~tL~gHs~~VtsLafSp-Dg~lLASGS~DGtI 309 (1715)
+.+|.+.|++++|+|+|++||||+.|+.|+||++.+. . ....+. +...|.+++|++ ++.+||+++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997532 1 223334 356899999987 47899999999999
Q ss_pred EEEECCCCCceEEEeCCCCCeEEEEecC-CCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCC
Q 048801 310 RVWRLPDGLPISVLRGHTGAVTAIAFSP-RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNG 388 (1715)
Q Consensus 310 rVWDl~tg~~l~~L~gH~~~VtsLafSP-dg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~ 388 (1715)
+|||+.++..+..+.+|.+.|++++|+| ++. +|++|+.||+|++||+.++..+..+..
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~---~L~Sgs~Dg~v~iWd~~~~~~~~~~~~------------------ 616 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPT---LLASGSDDGSVKLWSINQGVSIGTIKT------------------ 616 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCC---EEEEEcCCCEEEEEECCCCcEEEEEec------------------
Confidence 9999999999999999999999999997 454 899999999999999987765443311
Q ss_pred CCCCCCCCCcceeEEEEc-cCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccc
Q 048801 389 PSSSNGLQSHQILCCAYN-ANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAM 467 (1715)
Q Consensus 389 ~~~~~~~h~~~VtslafS-pdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~ 467 (1715)
...|.++.|+ ++|.+|++|+.||.|++||+++.. ..+..+.+|...|.++.|.+ +
T Consensus 617 --------~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~--------~~~~~~~~h~~~V~~v~f~~-~------- 672 (793)
T PLN00181 617 --------KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK--------LPLCTMIGHSKTVSYVRFVD-S------- 672 (793)
T ss_pred --------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC--------ccceEecCCCCCEEEEEEeC-C-------
Confidence 2348899995 579999999999999999997642 13456778999999999974 2
Q ss_pred cccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCC
Q 048801 468 SDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG 547 (1715)
Q Consensus 468 ~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~ 547 (1715)
..|++++.|++|++||+..... .....++..+.+|...
T Consensus 673 -------------------~~lvs~s~D~~ikiWd~~~~~~-----------------------~~~~~~l~~~~gh~~~ 710 (793)
T PLN00181 673 -------------------STLVSSSTDNTLKLWDLSMSIS-----------------------GINETPLHSFMGHTNV 710 (793)
T ss_pred -------------------CEEEEEECCCEEEEEeCCCCcc-----------------------ccCCcceEEEcCCCCC
Confidence 5899999999999999874210 0012334566778889
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEE-------------ecCCCCeEEEEEccCCCcEEEEEeCCCcEEE
Q 048801 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSL-------------TGHSASSYVLDVHPFNPRIAMSAGYDGRTIV 614 (1715)
Q Consensus 548 VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL-------------~gH~~~V~sLafSP~dg~lLaSgs~DGtI~V 614 (1715)
+.+++|++++.+|++|+.|+.|+||+......+..+ ..|...|.+++|+| ++.+|++|+.||.|+|
T Consensus 711 i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i 789 (793)
T PLN00181 711 KNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKI 789 (793)
T ss_pred eeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEE
Confidence 999999999999999999999999998766544322 23456799999999 7788999999999999
Q ss_pred EEC
Q 048801 615 WDI 617 (1715)
Q Consensus 615 WDl 617 (1715)
|++
T Consensus 790 ~~~ 792 (793)
T PLN00181 790 LEM 792 (793)
T ss_pred Eec
Confidence 996
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-27 Score=291.58 Aligned_cols=298 Identities=21% Similarity=0.378 Sum_probs=258.6
Q ss_pred EEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC
Q 048801 238 KLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG 317 (1715)
Q Consensus 238 ~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg 317 (1715)
.|..-+..|-.++|+|...+|+++-..|.|.+||..-+.++..+..|.++|..++|+|++.+++||+.|-.|+||+..+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 45566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCC
Q 048801 318 LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQS 397 (1715)
Q Consensus 318 ~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~ 397 (1715)
+++.+|.||-.-|..+.|++.-+ .|+|+|.|.+|+||++.+..++..+ .+|.
T Consensus 84 rclftL~GHlDYVRt~~FHheyP---WIlSASDDQTIrIWNwqsr~~iavl-------------------------tGHn 135 (1202)
T KOG0292|consen 84 RCLFTLLGHLDYVRTVFFHHEYP---WILSASDDQTIRIWNWQSRKCIAVL-------------------------TGHN 135 (1202)
T ss_pred eehhhhccccceeEEeeccCCCc---eEEEccCCCeEEEEeccCCceEEEE-------------------------ecCc
Confidence 99999999999999999999987 8999999999999999988876554 4679
Q ss_pred cceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCC-------------------CC-CceeeeeecCCCCCeeEEEEc
Q 048801 398 HQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDS-------------------EQ-PIHELDVLSGHENDVNYVQFS 457 (1715)
Q Consensus 398 ~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~-------------------~~-~~~~l~~l~gH~~~V~sLafs 457 (1715)
+.|.|..|+|...++|+++-|.+|+|||+..-+.... ++ .......+.||...|+.++|+
T Consensus 136 HYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh 215 (1202)
T KOG0292|consen 136 HYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH 215 (1202)
T ss_pred eEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec
Confidence 9999999999999999999999999999964321100 00 112235788999999999999
Q ss_pred cCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCC
Q 048801 458 GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP 537 (1715)
Q Consensus 458 pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 537 (1715)
|.. ..|++|+.|..|++|.....+ .-.
T Consensus 216 pTl--------------------------pliVSG~DDRqVKlWrmnetK---------------------------aWE 242 (1202)
T KOG0292|consen 216 PTL--------------------------PLIVSGADDRQVKLWRMNETK---------------------------AWE 242 (1202)
T ss_pred CCc--------------------------ceEEecCCcceeeEEEecccc---------------------------cee
Confidence 965 699999999999999876311 123
Q ss_pred cccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 538 RQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 538 ~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
+.+..+|.+.|+++-|+|...+|++.+.|++|+|||+...+.+++++...+..+.++.+| ...+++ ++.|+-+.||.+
T Consensus 243 vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP-~lNLfA-AgHDsGm~VFkl 320 (1202)
T KOG0292|consen 243 VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHP-ELNLFA-AGHDSGMIVFKL 320 (1202)
T ss_pred ehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecC-Ccceee-eecCCceEEEEE
Confidence 445778999999999999999999999999999999999999999998888999999999 666665 456666777766
Q ss_pred C
Q 048801 618 W 618 (1715)
Q Consensus 618 ~ 618 (1715)
.
T Consensus 321 e 321 (1202)
T KOG0292|consen 321 E 321 (1202)
T ss_pred c
Confidence 5
No 44
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=3.1e-27 Score=316.37 Aligned_cols=303 Identities=16% Similarity=0.271 Sum_probs=244.3
Q ss_pred CCcEEEEeCCCCcEEEEe-----cCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC--------CceEEEeCCCCCe
Q 048801 264 DRLVKIWSMETAFCLASC-----RGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG--------LPISVLRGHTGAV 330 (1715)
Q Consensus 264 DGtIrIWDl~tgk~l~tL-----~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg--------~~l~~L~gH~~~V 330 (1715)
+|.+++|+..+......+ ..|.+.|++++|+|+|.+||+|+.|+.|+||++... .++..+. +...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 788999998876655443 458999999999999999999999999999997532 1233343 45689
Q ss_pred EEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CC
Q 048801 331 TAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NG 409 (1715)
Q Consensus 331 tsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG 409 (1715)
.+++|++.... +|++++.||+|++||+.+++.+..+ ..|...|++++|+| ++
T Consensus 536 ~~l~~~~~~~~--~las~~~Dg~v~lWd~~~~~~~~~~-------------------------~~H~~~V~~l~~~p~~~ 588 (793)
T PLN00181 536 SGICWNSYIKS--QVASSNFEGVVQVWDVARSQLVTEM-------------------------KEHEKRVWSIDYSSADP 588 (793)
T ss_pred eeEEeccCCCC--EEEEEeCCCeEEEEECCCCeEEEEe-------------------------cCCCCCEEEEEEcCCCC
Confidence 99999986432 7999999999999999876543332 24577799999997 78
Q ss_pred CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceE
Q 048801 410 TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNI 489 (1715)
Q Consensus 410 ~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~L 489 (1715)
.+|++|+.||.|++||+.++. .+..+..+ ..|.++.|.+.. +..|
T Consensus 589 ~~L~Sgs~Dg~v~iWd~~~~~---------~~~~~~~~-~~v~~v~~~~~~-------------------------g~~l 633 (793)
T PLN00181 589 TLLASGSDDGSVKLWSINQGV---------SIGTIKTK-ANICCVQFPSES-------------------------GRSL 633 (793)
T ss_pred CEEEEEcCCCEEEEEECCCCc---------EEEEEecC-CCeEEEEEeCCC-------------------------CCEE
Confidence 999999999999999998643 24444444 578999996532 3789
Q ss_pred EEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeE
Q 048801 490 VTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRI 569 (1715)
Q Consensus 490 aSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI 569 (1715)
++|+.||.|++||+++.. .+...+.+|...|.++.|. ++.+|++++.|++|
T Consensus 634 atgs~dg~I~iwD~~~~~----------------------------~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~i 684 (793)
T PLN00181 634 AFGSADHKVYYYDLRNPK----------------------------LPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTL 684 (793)
T ss_pred EEEeCCCeEEEEECCCCC----------------------------ccceEecCCCCCEEEEEEe-CCCEEEEEECCCEE
Confidence 999999999999997522 1223455788899999997 78899999999999
Q ss_pred EEEECCC------CceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE-------------ccc
Q 048801 570 CVWNAVD------GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE-------------IGR 630 (1715)
Q Consensus 570 ~IWDl~s------g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~-------------~h~ 630 (1715)
+|||+.. +.++..+.+|...+.+++|+| ++.+|++|+.||.|+||+.....++..+. .+.
T Consensus 685 kiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 763 (793)
T PLN00181 685 KLWDLSMSISGINETPLHSFMGHTNVKNFVGLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDAS 763 (793)
T ss_pred EEEeCCCCccccCCcceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCC
Confidence 9999974 367889999999999999999 67899999999999999987765554332 233
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 631 FKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 631 ~~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
..|.+++|+|+|..|++|+.+|.|+||++
T Consensus 764 ~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 764 QFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 46899999999999999999999999986
No 45
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=2.7e-29 Score=292.31 Aligned_cols=291 Identities=19% Similarity=0.305 Sum_probs=252.3
Q ss_pred CcEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCeeEEEECCC-CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCC
Q 048801 275 AFCLASCRGHEGDITDLAVSS-NNTLVASASNDFVIRVWRLPD-GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG 352 (1715)
Q Consensus 275 gk~l~tL~gHs~~VtsLafSp-Dg~lLASGS~DGtIrVWDl~t-g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DG 352 (1715)
.+.+.++.||+..|+++.|.| .+.+|++|+.|+.|+||++-. +.+++++.+|..+|.+++|++++. .+++++.|+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~---~fLS~sfD~ 280 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT---SFLSASFDR 280 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC---eeeeeecce
Confidence 356788999999999999999 899999999999999999976 899999999999999999999998 799999999
Q ss_pred cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCc
Q 048801 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSV 431 (1715)
Q Consensus 353 tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~ 431 (1715)
.|++||+.+|+++.++.. ...++|+.|+|++ +.|++|+.|+.|+.||+++++
T Consensus 281 ~lKlwDtETG~~~~~f~~--------------------------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k- 333 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHL--------------------------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK- 333 (503)
T ss_pred eeeeeccccceEEEEEec--------------------------CCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-
Confidence 999999999998877754 3447999999998 899999999999999999865
Q ss_pred cCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcc
Q 048801 432 EDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGK 511 (1715)
Q Consensus 432 ~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~ 511 (1715)
.++.+..|-+.|..+.|-+++ .++++.+.|++++||+.+....+..
T Consensus 334 --------vvqeYd~hLg~i~~i~F~~~g--------------------------~rFissSDdks~riWe~~~~v~ik~ 379 (503)
T KOG0282|consen 334 --------VVQEYDRHLGAILDITFVDEG--------------------------RRFISSSDDKSVRIWENRIPVPIKN 379 (503)
T ss_pred --------HHHHHHhhhhheeeeEEccCC--------------------------ceEeeeccCccEEEEEcCCCccchh
Confidence 367788899999999999987 7999999999999999875332111
Q ss_pred cccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCC---ceEEEEecCC-
Q 048801 512 VGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG---SLVHSLTGHS- 587 (1715)
Q Consensus 512 ~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg---~~l~tL~gH~- 587 (1715)
....+.....+|..+|++.++++-+.|+.|.|+.+... .....+.||.
T Consensus 380 ----------------------------i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v 431 (503)
T KOG0282|consen 380 ----------------------------IADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV 431 (503)
T ss_pred ----------------------------hcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec
Confidence 11223345678999999999999999999999987543 2334667884
Q ss_pred -CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCC-CEEEEEeCCCeEEEEE
Q 048801 588 -ASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDG-TSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 588 -~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG-~~LAsgs~DG~I~IWd 658 (1715)
+.-..+.||| |+.+|++|+.||.+.+||..+-+.+..+.+|...++.+.|+|.. ..+|+|+.+|.|++|+
T Consensus 432 aGys~~v~fSp-DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 432 AGYSCQVDFSP-DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCceeeEEEcC-CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 4456789999 88999999999999999999999999999999999999999964 5688999999999996
No 46
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3e-28 Score=277.52 Aligned_cols=293 Identities=19% Similarity=0.285 Sum_probs=245.6
Q ss_pred cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC---CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCC
Q 048801 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG---LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG 352 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg---~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DG 352 (1715)
+..+.+..|+..|+-+.||++|++||+++.|.+..+|.+... +...++.+|..+|..+.|+||.+ +|++|+.|.
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr---yLlaCg~~e 291 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR---YLLACGFDE 291 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC---eEEecCchH
Confidence 445678889999999999999999999999999999988654 34778899999999999999998 899999999
Q ss_pred cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCcc
Q 048801 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVE 432 (1715)
Q Consensus 353 tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~ 432 (1715)
.+.+||+.+|.....+.. .+...+.+++|.|||..+++|+.|+.|..||+....
T Consensus 292 ~~~lwDv~tgd~~~~y~~------------------------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-- 345 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPS------------------------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-- 345 (519)
T ss_pred heeeccCCcchhhhhccc------------------------CcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--
Confidence 999999999886543311 124568999999999999999999999999997532
Q ss_pred CCCCCceeeeeecCC-CCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcc
Q 048801 433 DSEQPIHELDVLSGH-ENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGK 511 (1715)
Q Consensus 433 ~~~~~~~~l~~l~gH-~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~ 511 (1715)
+....+- ...|.+++..++| +.+++.+.|..|++++..+....
T Consensus 346 --------~~~W~gvr~~~v~dlait~Dg--------------------------k~vl~v~~d~~i~l~~~e~~~dr-- 389 (519)
T KOG0293|consen 346 --------LGNWEGVRDPKVHDLAITYDG--------------------------KYVLLVTVDKKIRLYNREARVDR-- 389 (519)
T ss_pred --------hhcccccccceeEEEEEcCCC--------------------------cEEEEEecccceeeechhhhhhh--
Confidence 2222222 2468999999987 78888889999999988753211
Q ss_pred cccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeE
Q 048801 512 VGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSY 591 (1715)
Q Consensus 512 ~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~ 591 (1715)
.+.....+|+++++|.||+++++.-.+..|.+||+....++..+.||...-+
T Consensus 390 ----------------------------~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~f 441 (519)
T KOG0293|consen 390 ----------------------------GLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHF 441 (519)
T ss_pred ----------------------------ccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccce
Confidence 1334466899999999999999999999999999999999999999976543
Q ss_pred EE--EEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCC-CCEEEEEeCCCeEEEEECCC
Q 048801 592 VL--DVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPD-GTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 592 sL--afSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPD-G~~LAsgs~DG~I~IWdl~t 661 (1715)
-+ +|--.+..++++|+.|+.|+||+..+|+++..+.+|...|.+|+|+|. -.++|++++||+|+||....
T Consensus 442 iIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 442 IIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 33 454434579999999999999999999999999999999999999995 56788999999999998753
No 47
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.4e-27 Score=287.24 Aligned_cols=343 Identities=21% Similarity=0.269 Sum_probs=258.6
Q ss_pred ccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCe
Q 048801 209 KHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI 288 (1715)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~V 288 (1715)
.|+.-|.+.++........|++.-..++.+|..|.++|..|+|+|++.++++||+|-.|+||+..+.+++.+|.||-.-|
T Consensus 17 FHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYV 96 (1202)
T KOG0292|consen 17 FHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYV 96 (1202)
T ss_pred cCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcccccee
Confidence 34555666666666777778888888999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCccee
Q 048801 289 TDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRI 368 (1715)
Q Consensus 289 tsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i 368 (1715)
..+.|++.-.+|+|+|.|.+|+||++.+++++.+++||..-|.|..|+|... .++|+|.|.+|+|||+..-+....-
T Consensus 97 Rt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED---lIVSaSLDQTVRVWDisGLRkk~~~ 173 (1202)
T KOG0292|consen 97 RTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED---LIVSASLDQTVRVWDISGLRKKNKA 173 (1202)
T ss_pred EEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc---eEEEecccceEEEEeecchhccCCC
Confidence 9999999999999999999999999999999999999999999999999776 8999999999999999754321111
Q ss_pred cCCCCCCCccCcc---CCC--CCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeee
Q 048801 369 YLPKPPDAITGKS---NVP--SNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV 443 (1715)
Q Consensus 369 ~~~~~~~~i~g~~---~~~--~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~ 443 (1715)
.. ...+...+.. ... ..........+|...|.-++|+|.-.+|++|+.|..|++|.+...+ ..++.+
T Consensus 174 pg-~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-------aWEvDt 245 (1202)
T KOG0292|consen 174 PG-SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-------AWEVDT 245 (1202)
T ss_pred CC-CchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc-------ceeehh
Confidence 00 0001111110 000 0112234567889999999999999999999999999999997543 356788
Q ss_pred ecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccC
Q 048801 444 LSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKV 523 (1715)
Q Consensus 444 l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~ 523 (1715)
..+|.+.|.++.|+|.. +.|++.+.|++|+|||+..+..+.
T Consensus 246 crgH~nnVssvlfhp~q--------------------------~lIlSnsEDksirVwDm~kRt~v~------------- 286 (1202)
T KOG0292|consen 246 CRGHYNNVSSVLFHPHQ--------------------------DLILSNSEDKSIRVWDMTKRTSVQ------------- 286 (1202)
T ss_pred hhcccCCcceEEecCcc--------------------------ceeEecCCCccEEEEeccccccee-------------
Confidence 99999999999999974 899999999999999998654332
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEec--------------------------CCeEEEEECCCC
Q 048801 524 PPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM--------------------------DCRICVWNAVDG 577 (1715)
Q Consensus 524 ~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~--------------------------DGtI~IWDl~sg 577 (1715)
.+.........++..|..+++++|.. |..|+-+|+.+.
T Consensus 287 ----------------tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~ 350 (1202)
T KOG0292|consen 287 ----------------TFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQ 350 (1202)
T ss_pred ----------------eeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeecccc
Confidence 23333445566666666666654433 233344444332
Q ss_pred c--eEEEEecC---CCCeEEEEEccCCCcEEEEEeCCC-cEEEEEC
Q 048801 578 S--LVHSLTGH---SASSYVLDVHPFNPRIAMSAGYDG-RTIVWDI 617 (1715)
Q Consensus 578 ~--~l~tL~gH---~~~V~sLafSP~dg~lLaSgs~DG-tI~VWDl 617 (1715)
+ .+..++.. ..+++++.++|..+..+++...|+ ..-++.+
T Consensus 351 ~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~i 396 (1202)
T KOG0292|consen 351 KDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQI 396 (1202)
T ss_pred ccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEe
Confidence 2 12222222 256788999996666666655443 3344444
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.7e-26 Score=273.62 Aligned_cols=281 Identities=21% Similarity=0.335 Sum_probs=238.2
Q ss_pred CCCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 048801 191 QADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIW 270 (1715)
Q Consensus 191 ~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIW 270 (1715)
+.+.|.++.+.+ ..|.+..+.|......|.+.+...++.|.--.-+|.++.|-.-.+++++|++|..|+||
T Consensus 12 rSdRVKsVd~HP---------tePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 12 RSDRVKSVDFHP---------TEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVF 82 (794)
T ss_pred cCCceeeeecCC---------CCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEE
Confidence 445666666544 44666677777788888899999999999999999999999999999999999999999
Q ss_pred eCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC-CceEEEeCCCCCeEEEEecCCCCcceEEEEec
Q 048801 271 SMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG-LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS 349 (1715)
Q Consensus 271 Dl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg-~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS 349 (1715)
+..|++.+..+..|..-|.||+.+|...+++|+|.|-+|++||.+.+ .+.+++.||+.-|.+++|.|...+ .+++++
T Consensus 83 nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~n--tFaS~s 160 (794)
T KOG0276|consen 83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPN--TFASAS 160 (794)
T ss_pred ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcc--ceeeee
Confidence 99999999999999999999999999999999999999999999865 778899999999999999998775 899999
Q ss_pred CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC--CeEEEecCCCeEEEEeCC
Q 048801 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG--TVFVTGSSDTFARVWSAC 427 (1715)
Q Consensus 350 ~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG--~~LatGs~DG~IrVWDl~ 427 (1715)
.|++|+||.+....... ...+|...|.|+.|-+.| .+|++|+.|.+|+|||..
T Consensus 161 LDrTVKVWslgs~~~nf-------------------------Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ 215 (794)
T KOG0276|consen 161 LDRTVKVWSLGSPHPNF-------------------------TLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ 215 (794)
T ss_pred ccccEEEEEcCCCCCce-------------------------eeeccccCcceEEeccCCCcceEEecCCCceEEEeecc
Confidence 99999999986544322 234678889999998865 599999999999999997
Q ss_pred CCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCc
Q 048801 428 KSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 507 (1715)
Q Consensus 428 t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~ 507 (1715)
+ ..++.++.||...|..+.|+|.- ..|++|+.||+++||+..|-+
T Consensus 216 t---------k~CV~TLeGHt~Nvs~v~fhp~l--------------------------piiisgsEDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 216 T---------KSCVQTLEGHTNNVSFVFFHPEL--------------------------PIIISGSEDGTVRIWNSKTYK 260 (794)
T ss_pred h---------HHHHHHhhcccccceEEEecCCC--------------------------cEEEEecCCccEEEecCccee
Confidence 7 45689999999999999999975 699999999999999887633
Q ss_pred cCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEE
Q 048801 508 SHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICV 571 (1715)
Q Consensus 508 ~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~I 571 (1715)
.. ..+.-....|.||+-.+.++.+++|...|.|.|
T Consensus 261 lE-----------------------------~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 261 LE-----------------------------KTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred hh-----------------------------hhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 21 112223446888888888888888877776544
No 49
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.1e-27 Score=297.92 Aligned_cols=291 Identities=27% Similarity=0.409 Sum_probs=250.9
Q ss_pred EEEecCC-CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC--ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcE
Q 048801 278 LASCRGH-EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL--PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354 (1715)
Q Consensus 278 l~tL~gH-s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~--~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtV 354 (1715)
...+.+| ...|+++.|+++|++|++++.|+.+++|++.++. ....+.+|...|.+++|+|++. ++++++.|++|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~---~l~s~s~D~ti 227 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS---YLLSGSDDKTL 227 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc---EEEEecCCceE
Confidence 3444444 7899999999999999999999999999998777 7788889999999999999998 89999999999
Q ss_pred EEEecCCC-CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccC
Q 048801 355 RIWDARYS-QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVED 433 (1715)
Q Consensus 355 rIWDl~tg-~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~ 433 (1715)
+|||+... ..+.++ .+|...|++++|+|+|+++++|+.|++|+|||+.++
T Consensus 228 riwd~~~~~~~~~~l-------------------------~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~---- 278 (456)
T KOG0266|consen 228 RIWDLKDDGRNLKTL-------------------------KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG---- 278 (456)
T ss_pred EEeeccCCCeEEEEe-------------------------cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC----
Confidence 99999433 333332 357888999999999999999999999999999874
Q ss_pred CCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccc
Q 048801 434 SEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVG 513 (1715)
Q Consensus 434 ~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~ 513 (1715)
.++..+.+|.+.|++++|++++ ..|++++.||.|+|||+.++...
T Consensus 279 -----~~~~~l~~hs~~is~~~f~~d~--------------------------~~l~s~s~d~~i~vwd~~~~~~~---- 323 (456)
T KOG0266|consen 279 -----ECVRKLKGHSDGISGLAFSPDG--------------------------NLLVSASYDGTIRVWDLETGSKL---- 323 (456)
T ss_pred -----eEEEeeeccCCceEEEEECCCC--------------------------CEEEEcCCCccEEEEECCCCcee----
Confidence 4588999999999999999987 79999999999999999975521
Q ss_pred cccccccccCCCCCCCCCCCCCCCcccccCCCC--CeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeE
Q 048801 514 RWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPR--GVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSY 591 (1715)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~--~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~ 591 (1715)
....+..+.. .+++++|+|++.+|++++.|+.+++||+..+..+..+.+|...++
T Consensus 324 -----------------------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~ 380 (456)
T KOG0266|consen 324 -----------------------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVR 380 (456)
T ss_pred -----------------------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcce
Confidence 0112222222 589999999999999999999999999999999999999988643
Q ss_pred E---EEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcc-cceEEEEEEcCCCCEEEEEe--CCCeEEEEEC
Q 048801 592 V---LDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIG-RFKLVDGKFSPDGTSIVLSD--DVGQIYLLNT 659 (1715)
Q Consensus 592 s---LafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h-~~~V~svafSPDG~~LAsgs--~DG~I~IWdl 659 (1715)
+ ...++ ++.++++|+.|+.|.+|++.++..+..+.+| ...+..+.|+|...++++++ .|+.|++|..
T Consensus 381 ~~~~~~~~~-~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 381 CIFSPTLST-GGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred eEecccccC-CCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 3 33455 7899999999999999999999999999999 88899999999999999987 7899999975
No 50
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=6.8e-26 Score=270.23 Aligned_cols=435 Identities=19% Similarity=0.230 Sum_probs=281.2
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC--CCe
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGS--DDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN--DFV 308 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS--~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~--DGt 308 (1715)
-.+.+.+..|..+++||||+++|+|+|||- ....++||++.+-..+..|..|.-.|+|++|+|.++||++.+. |-.
T Consensus 68 ~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMI 147 (1080)
T KOG1408|consen 68 CTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMI 147 (1080)
T ss_pred cchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceE
Confidence 344556778899999999999999999985 6778999999998899999999999999999999999997654 455
Q ss_pred eEEEECCCCCceEEEeCCCCCeEEEEecCCCCc-----------------------------------------------
Q 048801 309 IRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSA----------------------------------------------- 341 (1715)
Q Consensus 309 IrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~----------------------------------------------- 341 (1715)
|.+||+........- .-...|..++|+.++.+
T Consensus 148 Vnv~dWr~N~~~asn-kiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg 226 (1080)
T KOG1408|consen 148 VNVNDWRVNSSGASN-KISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACG 226 (1080)
T ss_pred EEhhhhhhccccccc-ccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhc
Confidence 667765422111100 01122333333333330
Q ss_pred -------------------------------------------ceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCcc
Q 048801 342 -------------------------------------------IYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAIT 378 (1715)
Q Consensus 342 -------------------------------------------~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~ 378 (1715)
..+|++|+.+|.|++|+..+.....++..+.....-.
T Consensus 227 ~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~ 306 (1080)
T KOG1408|consen 227 VGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDT 306 (1080)
T ss_pred CcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccch
Confidence 0155566666666666655544444333222111100
Q ss_pred CccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEcc
Q 048801 379 GKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSG 458 (1715)
Q Consensus 379 g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafsp 458 (1715)
.....+ ...........-.....+.|++....|.+...|..|+|||++.-+ .. .....+..|...|+.+...|
T Consensus 307 a~~~q~-~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~-----kv-gk~~s~lyHS~ciW~Ve~~p 379 (1080)
T KOG1408|consen 307 ANLSQP-EPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVN-----KV-GKCSSMLYHSACIWDVENLP 379 (1080)
T ss_pred hhcccc-cccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccc-----cc-cceeeeeeccceeeeecccc
Confidence 000000 000000111111224567899999999999999999999998642 12 22345567888888887777
Q ss_pred CcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccc-ccccccCCCCCCC-------C
Q 048801 459 CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWT-RAYHLKVPPPPLP-------P 530 (1715)
Q Consensus 459 dg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~-~~~~l~~~~~~~~-------~ 530 (1715)
...- .+ ...-.....|+||+.||+|++|++..+.....+.... ..-.++.+..... .
T Consensus 380 ~nv~----------~~-----~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~ 444 (1080)
T KOG1408|consen 380 CNVH----------SP-----TAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDAS 444 (1080)
T ss_pred cccc----------Cc-----ccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhcc
Confidence 4310 00 0111224579999999999999998632111100000 0000000000000 0
Q ss_pred CCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCc--------------------------------
Q 048801 531 QPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS-------------------------------- 578 (1715)
Q Consensus 531 ~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~-------------------------------- 578 (1715)
................+++++++||+|++||+|...|+|+||++...+
T Consensus 445 ~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr 524 (1080)
T KOG1408|consen 445 AGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASR 524 (1080)
T ss_pred CCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccC
Confidence 011112223344566789999999999999999999999999986422
Q ss_pred --e------------EEEEecCCCCeEEEEEc------------------------------------------------
Q 048801 579 --L------------VHSLTGHSASSYVLDVH------------------------------------------------ 596 (1715)
Q Consensus 579 --~------------l~tL~gH~~~V~sLafS------------------------------------------------ 596 (1715)
+ +.++.+|...|+++.|.
T Consensus 525 dRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~V 604 (1080)
T KOG1408|consen 525 DRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAV 604 (1080)
T ss_pred CceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeee
Confidence 2 22344666666666543
Q ss_pred -cCCCcEEEEEeCCCcEEEEECCCCceEEEEEc---ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc------
Q 048801 597 -PFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEI---GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK------ 666 (1715)
Q Consensus 597 -P~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~---h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k------ 666 (1715)
| ...++++++.|..|+||++.+|+.++.|++ |.+....+...|.|-|||+.+.|.+|.++|+-+|++..
T Consensus 605 dp-~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHs 683 (1080)
T KOG1408|consen 605 DP-TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHS 683 (1080)
T ss_pred CC-CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcc
Confidence 3 335778999999999999999999999986 34568889999999999999999999999999999875
Q ss_pred ccccceeecCCCccEEEcCCCCeee
Q 048801 667 DAKYDQFFLGDYRPLIRDSLGNVLD 691 (1715)
Q Consensus 667 ~~~~~~~fs~D~r~L~~d~~g~vld 691 (1715)
.....+-|++|.+.|+..+....+.
T Consensus 684 E~VTG~kF~nDCkHlISvsgDgCIF 708 (1080)
T KOG1408|consen 684 EAVTGVKFLNDCKHLISVSGDGCIF 708 (1080)
T ss_pred hheeeeeecccchhheeecCCceEE
Confidence 3345678999999999776666554
No 51
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.9e-26 Score=252.59 Aligned_cols=294 Identities=19% Similarity=0.284 Sum_probs=241.5
Q ss_pred cEEEEecCCCCCeEEEEECCC-CCEEEEEeCCCeeEEEECCCC---CceEEE-eCCCCCeEEEEecCCCCcceEEEEecC
Q 048801 276 FCLASCRGHEGDITDLAVSSN-NTLVASASNDFVIRVWRLPDG---LPISVL-RGHTGAVTAIAFSPRPSAIYQLLSSSD 350 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpD-g~lLASGS~DGtIrVWDl~tg---~~l~~L-~gH~~~VtsLafSPdg~~~~~LaSgS~ 350 (1715)
..++.+.+|.+.|..++|+|- |.+||+|+.|..|+||++..+ .+...+ .+|...|.+++|+|.++ +|++++.
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~---~La~aSF 81 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR---YLASASF 81 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc---EEEEeec
Confidence 356788999999999999998 899999999999999998753 333334 37999999999999998 9999999
Q ss_pred CCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCC
Q 048801 351 DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSS 430 (1715)
Q Consensus 351 DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~ 430 (1715)
|+++.||.-..+.+.. .....+|...|.|++|+++|.+||+++.|..|-||.+...
T Consensus 82 D~t~~Iw~k~~~efec-----------------------v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded- 137 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFEC-----------------------VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED- 137 (312)
T ss_pred cceEEEeecCCCceeE-----------------------EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC-
Confidence 9999999866554322 2234567889999999999999999999999999998642
Q ss_pred ccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCc
Q 048801 431 VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHG 510 (1715)
Q Consensus 431 ~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~ 510 (1715)
....++..+..|...|..+.|+|.. ++|++++.|.+|++|.-...
T Consensus 138 -----dEfec~aVL~~HtqDVK~V~WHPt~--------------------------dlL~S~SYDnTIk~~~~~~d---- 182 (312)
T KOG0645|consen 138 -----DEFECIAVLQEHTQDVKHVIWHPTE--------------------------DLLFSCSYDNTIKVYRDEDD---- 182 (312)
T ss_pred -----CcEEEEeeeccccccccEEEEcCCc--------------------------ceeEEeccCCeEEEEeecCC----
Confidence 3467889999999999999999974 79999999999999975521
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCe
Q 048801 511 KVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASS 590 (1715)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V 590 (1715)
.. -...+.+.+|...|.+++|++.|..|++++.|++|+||...+. .-.-|...+
T Consensus 183 --dd--------------------W~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----~~~~~sr~~ 236 (312)
T KOG0645|consen 183 --DD--------------------WECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----LSGMHSRAL 236 (312)
T ss_pred --CC--------------------eeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----cchhcccce
Confidence 01 2345677888889999999999999999999999999986522 112377889
Q ss_pred EEEEEccCCCcEEEEEeCCCcEEEEECCCC------ceEE-EEEcccceEEEEEEcCC-CCEEEEEeCCCeEEEEECC
Q 048801 591 YVLDVHPFNPRIAMSAGYDGRTIVWDIWEG------TPIR-IYEIGRFKLVDGKFSPD-GTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 591 ~sLafSP~dg~lLaSgs~DGtI~VWDl~tg------k~l~-tl~~h~~~V~svafSPD-G~~LAsgs~DG~I~IWdl~ 660 (1715)
+.+.|. ...|+|++.|+.|+|+....+ +.+. .-..|...|.+++|.|. ..+|++|++||.|.+|.+.
T Consensus 237 Y~v~W~---~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 237 YDVPWD---NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred Eeeeec---ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 999996 458899999999999976542 1121 22346778999999995 7889999999999999874
No 52
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=1.2e-26 Score=257.15 Aligned_cols=287 Identities=21% Similarity=0.292 Sum_probs=241.9
Q ss_pred EEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC-CCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEE
Q 048801 277 CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP-DGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355 (1715)
Q Consensus 277 ~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~-tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVr 355 (1715)
++..+.+|.+.|+.+.|+|+|.+||||+.|..|.+|++. ..+...++++|.+.|..+.|.+++. .|++++.|.+|+
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s---~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGS---HILSCGTDKTVR 115 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCC---EEEEecCCceEE
Confidence 344578999999999999999999999999999999964 4566788899999999999999998 899999999999
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCC
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDS 434 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~ 434 (1715)
.||+.+|+.+... ..|..-|.++.-+.-| .++.+|+.||+++|||+++...
T Consensus 116 ~wD~~tG~~~rk~-------------------------k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~--- 167 (338)
T KOG0265|consen 116 GWDAETGKRIRKH-------------------------KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA--- 167 (338)
T ss_pred EEecccceeeehh-------------------------ccccceeeecCccccCCeEEEecCCCceEEEEeecccch---
Confidence 9999999876554 2345556777654444 4677889999999999986422
Q ss_pred CCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccc
Q 048801 435 EQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGR 514 (1715)
Q Consensus 435 ~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~ 514 (1715)
+.++ ...-.++++.|...+ +.+++|+-|+.|++||++..
T Consensus 168 ------~~t~-~~kyqltAv~f~d~s--------------------------~qv~sggIdn~ikvWd~r~~-------- 206 (338)
T KOG0265|consen 168 ------IKTF-ENKYQLTAVGFKDTS--------------------------DQVISGGIDNDIKVWDLRKN-------- 206 (338)
T ss_pred ------hhcc-ccceeEEEEEecccc--------------------------cceeeccccCceeeeccccC--------
Confidence 2222 224478899998775 78999999999999999752
Q ss_pred ccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC----CceEEEEecCCC--
Q 048801 515 WTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD----GSLVHSLTGHSA-- 588 (1715)
Q Consensus 515 ~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s----g~~l~tL~gH~~-- 588 (1715)
.....+.+|...|+.+..+++|.++.+-+.|.+|++||++- .+++..+.+|..
T Consensus 207 ---------------------d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf 265 (338)
T KOG0265|consen 207 ---------------------DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF 265 (338)
T ss_pred ---------------------cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhh
Confidence 23456788999999999999999999999999999999964 345888887643
Q ss_pred --CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEE
Q 048801 589 --SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLL 657 (1715)
Q Consensus 589 --~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IW 657 (1715)
....++|+| +++.+.+|+.|..+++||......+..+.+|.+.|.+++|+|....|.+++.|.+|++=
T Consensus 266 eknlL~cswsp-~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 266 EKNLLKCSWSP-NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred hhhcceeeccC-CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 345678999 78888999999999999998889999999999999999999999999999999999873
No 53
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2e-27 Score=268.57 Aligned_cols=276 Identities=22% Similarity=0.353 Sum_probs=238.6
Q ss_pred ccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CcEEEEecCCCCCeEEEEECCCCCEE
Q 048801 222 AIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET-AFCLASCRGHEGDITDLAVSSNNTLV 300 (1715)
Q Consensus 222 ~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~t-gk~l~tL~gHs~~VtsLafSpDg~lL 300 (1715)
......++..++++...|+||.++|..|+|+..|++||+++.|-.+++||.++ .++++.+.+|...|.+++|-|-|.+|
T Consensus 129 d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~i 208 (406)
T KOG0295|consen 129 DATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHI 208 (406)
T ss_pred CceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCee
Confidence 33444566677888999999999999999999999999999998899999987 67888899999999999999999999
Q ss_pred EEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCc
Q 048801 301 ASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGK 380 (1715)
Q Consensus 301 ASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~ 380 (1715)
++++.|.+|+.|++.+|-++.++.+|...|..++.+.||. .+++++.|.+|++|-+.++++...
T Consensus 209 lS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt---i~As~s~dqtl~vW~~~t~~~k~~------------- 272 (406)
T KOG0295|consen 209 LSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT---IIASCSNDQTLRVWVVATKQCKAE------------- 272 (406)
T ss_pred eecccccceeEEecccceeEEeccCchHhEEEEEecCCee---EEEecCCCceEEEEEeccchhhhh-------------
Confidence 9999999999999999999999999999999999999997 899999999999999988765433
Q ss_pred cCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCc
Q 048801 381 SNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 381 ~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg 460 (1715)
...|...|-|++|-|...+= . |.+. .+.. ++
T Consensus 273 ------------lR~hEh~vEci~wap~~~~~--~-------i~~a------------------t~~~----------~~ 303 (406)
T KOG0295|consen 273 ------------LREHEHPVECIAWAPESSYP--S-------ISEA------------------TGST----------NG 303 (406)
T ss_pred ------------hhccccceEEEEecccccCc--c-------hhhc------------------cCCC----------CC
Confidence 23467889999998874310 0 0000 0000 01
Q ss_pred ccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc
Q 048801 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR 540 (1715)
Q Consensus 461 ~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 540 (1715)
...+++++.|++|++||+.++. ++.+
T Consensus 304 -------------------------~~~l~s~SrDktIk~wdv~tg~-----------------------------cL~t 329 (406)
T KOG0295|consen 304 -------------------------GQVLGSGSRDKTIKIWDVSTGM-----------------------------CLFT 329 (406)
T ss_pred -------------------------ccEEEeecccceEEEEeccCCe-----------------------------EEEE
Confidence 2689999999999999998743 5567
Q ss_pred ccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 541 LLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 541 l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
+.+|...|..++|+|.|+||+++..|++++|||+.++++..++..|..-|++++|+. +.-+++||+-|.++++|..
T Consensus 330 L~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~-~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 330 LVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC-CCceEEeccccceeeeeec
Confidence 889999999999999999999999999999999999999999999999999999988 5569999999999999964
No 54
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.5e-27 Score=263.63 Aligned_cols=288 Identities=23% Similarity=0.366 Sum_probs=245.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEec--------CCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR--------GHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~--------gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
|...-+-|..|+|||+||++|+.||.|.+|+..+|+..+.++ -+..+|.|+.||.|..+||+|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 566778899999999999999999999999999998765543 478899999999999999999999999999
Q ss_pred ECCCCCceEEEe-CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 313 RLPDGLPISVLR-GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 313 Dl~tg~~l~~L~-gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
.+.+|.+++.+. .|+..|+|+.|+.|+. .+++++.|.+++|.-+.+|+++..+
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~S---qiLS~sfD~tvRiHGlKSGK~LKEf----------------------- 344 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNS---QILSASFDQTVRIHGLKSGKCLKEF----------------------- 344 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcc---hhhcccccceEEEeccccchhHHHh-----------------------
Confidence 999999999996 8999999999999998 8999999999999999999876654
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccc
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAF 471 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~ 471 (1715)
.+|...|+.+.|.++|..+++++.||+|+||+..+..+.....+ .+..-+|+++...|..
T Consensus 345 --rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~-------~~~d~~vnsv~~~PKn----------- 404 (508)
T KOG0275|consen 345 --RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP-------LGTDYPVNSVILLPKN----------- 404 (508)
T ss_pred --cCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC-------CCCcccceeEEEcCCC-----------
Confidence 45677899999999999999999999999999988655332222 2345578888887754
Q ss_pred cccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEE
Q 048801 472 KEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMI 551 (1715)
Q Consensus 472 ~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsl 551 (1715)
+..+++|...++|.|.++...- .+.+.. -....+...+.
T Consensus 405 --------------peh~iVCNrsntv~imn~qGQv--------VrsfsS-------------------GkREgGdFi~~ 443 (508)
T KOG0275|consen 405 --------------PEHFIVCNRSNTVYIMNMQGQV--------VRSFSS-------------------GKREGGDFINA 443 (508)
T ss_pred --------------CceEEEEcCCCeEEEEeccceE--------Eeeecc-------------------CCccCCceEEE
Confidence 4789999999999999886311 111110 01123456678
Q ss_pred EeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 552 VWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 552 afSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
++||.|.++.+.+.|+.++.|.+.+|++-+++..|...|..++-+| ...++++=+.||.+++|.
T Consensus 444 ~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP-HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 444 ILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHP-HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCc-ccchhhhhcccchhhhcC
Confidence 8999999999999999999999999999999999999999999999 788999999999999995
No 55
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=5e-26 Score=258.45 Aligned_cols=295 Identities=22% Similarity=0.348 Sum_probs=246.3
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCC
Q 048801 283 GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYS 362 (1715)
Q Consensus 283 gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg 362 (1715)
.|...|.++... +.+|++|+.||.++|||. .|+...++.||.++|.+++|.-.+.....|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 388899988887 789999999999999996 78999999999999998888655443337999999999999998876
Q ss_pred CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCc-----------
Q 048801 363 QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSV----------- 431 (1715)
Q Consensus 363 ~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~----------- 431 (1715)
...... .....+|...|.+++..++|..+++|+.|.+|.||+..+...
T Consensus 180 ~~~~~~---------------------~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rr 238 (423)
T KOG0313|consen 180 ENKVKA---------------------LKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRR 238 (423)
T ss_pred hhhhhH---------------------HhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhh
Confidence 543211 111237888999999999999999999999999999332110
Q ss_pred -----cCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCC
Q 048801 432 -----EDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 506 (1715)
Q Consensus 432 -----~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~ 506 (1715)
........++..+.||..+|.++.|++. ..+.+++.|.+|+.||+.++
T Consensus 239 k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~---------------------------~v~yS~SwDHTIk~WDletg 291 (423)
T KOG0313|consen 239 KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA---------------------------TVIYSVSWDHTIKVWDLETG 291 (423)
T ss_pred hhhhhhhcccccCceEEecccccceeeEEEcCC---------------------------CceEeecccceEEEEEeecc
Confidence 0111223456789999999999999984 58999999999999999986
Q ss_pred ccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCc---eEEEE
Q 048801 507 RSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS---LVHSL 583 (1715)
Q Consensus 507 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~---~l~tL 583 (1715)
..... ......++|+.++|..++|++|+.|..|++||.+++. ..++|
T Consensus 292 ~~~~~------------------------------~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~ 341 (423)
T KOG0313|consen 292 GLKST------------------------------LTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSL 341 (423)
T ss_pred cceee------------------------------eecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEee
Confidence 53221 2235578999999999999999999999999998764 45688
Q ss_pred ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 584 TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT-PIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 584 ~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk-~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
.+|.+.|.++.|+|.+..+|++|++||++++||+++.+ ++..+.+|...|.++.|.. |.+|++|+.|..|+|+.-
T Consensus 342 ~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 342 IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred ecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEecc
Confidence 99999999999999999999999999999999999887 9999999999999999975 567999999999999874
No 56
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=5.6e-27 Score=253.07 Aligned_cols=291 Identities=23% Similarity=0.312 Sum_probs=252.3
Q ss_pred EEEecCCCCCeEEEEECC---CCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcE
Q 048801 278 LASCRGHEGDITDLAVSS---NNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354 (1715)
Q Consensus 278 l~tL~gHs~~VtsLafSp---Dg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtV 354 (1715)
-.++.||+.+|..++||| +|-+|++++.||.-.+-+-++|.-+.++.||.+.|++.....+.. ..++++.|-+-
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~---~aasaaadfta 83 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNAT---RAASAAADFTA 83 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhh---hhhhhcccchh
Confidence 356789999999999986 899999999999999999999999999999999999999988765 67899999999
Q ss_pred EEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCC
Q 048801 355 RIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDS 434 (1715)
Q Consensus 355 rIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~ 434 (1715)
++||.-+|..+..+ .|.+-|..++|+.|.++|++|+.+..++|||+...
T Consensus 84 kvw~a~tgdelhsf--------------------------~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p----- 132 (334)
T KOG0278|consen 84 KVWDAVTGDELHSF--------------------------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP----- 132 (334)
T ss_pred hhhhhhhhhhhhhh--------------------------hhhheeeeEEecccchhhhccchHHHhhhhhccCC-----
Confidence 99999888765443 35677999999999999999999999999999754
Q ss_pred CCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccc
Q 048801 435 EQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGR 514 (1715)
Q Consensus 435 ~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~ 514 (1715)
..+...+.+|.+.|..+.|.... +.|++.+.|++|++||.+++..+.
T Consensus 133 ---~App~E~~ghtg~Ir~v~wc~eD--------------------------~~iLSSadd~tVRLWD~rTgt~v~---- 179 (334)
T KOG0278|consen 133 ---KAPPKEISGHTGGIRTVLWCHED--------------------------KCILSSADDKTVRLWDHRTGTEVQ---- 179 (334)
T ss_pred ---CCCchhhcCCCCcceeEEEeccC--------------------------ceEEeeccCCceEEEEeccCcEEE----
Confidence 33456788999999999998753 788888999999999999865322
Q ss_pred ccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEE
Q 048801 515 WTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLD 594 (1715)
Q Consensus 515 ~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLa 594 (1715)
.......|+++.++++|++|.++ ..+.|.+||..+..+++.+.. ...|.+..
T Consensus 180 --------------------------sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~-P~nV~SAS 231 (334)
T KOG0278|consen 180 --------------------------SLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM-PCNVESAS 231 (334)
T ss_pred --------------------------EEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccC-cccccccc
Confidence 22235678999999999988765 467899999999998888764 34588899
Q ss_pred EccCCCcEEEEEeCCCcEEEEECCCCceEEEE-EcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Q 048801 595 VHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY-EIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGES 664 (1715)
Q Consensus 595 fSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl-~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~ 664 (1715)
++| +..++++|+.|+.++.||..+|+.+..+ .+|.++|.++.|+|||...|+|+.||+|+||.+..++.
T Consensus 232 L~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 232 LHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ccC-CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 999 5688889999999999999999999997 88999999999999999999999999999999987753
No 57
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=1.3e-25 Score=282.16 Aligned_cols=288 Identities=26% Similarity=0.452 Sum_probs=250.6
Q ss_pred EEEcC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEE-ecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEEC
Q 048801 237 KKLRG-HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLAS-CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRL 314 (1715)
Q Consensus 237 ~~L~G-H~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~t-L~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl 314 (1715)
..+.+ |...|.|..|. +.++++++.|++|++|+..++..+.. +.||.+.|.+++|..-+.+|++|+.|.+++|||+
T Consensus 201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~ 278 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDC 278 (537)
T ss_pred eeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEec
Confidence 34444 67788999998 56899999999999999999999988 9999999999999887889999999999999999
Q ss_pred CCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 315 PDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 315 ~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
.+|.+..++.+|...|.++...+. ++++|+.|.+|++|++.++.++..+ .
T Consensus 279 ~sg~C~~~l~gh~stv~~~~~~~~-----~~~sgs~D~tVkVW~v~n~~~l~l~-------------------------~ 328 (537)
T KOG0274|consen 279 STGECTHSLQGHTSSVRCLTIDPF-----LLVSGSRDNTVKVWDVTNGACLNLL-------------------------R 328 (537)
T ss_pred CCCcEEEEecCCCceEEEEEccCc-----eEeeccCCceEEEEeccCcceEEEe-------------------------c
Confidence 999999999999999999999875 6889999999999999988766543 2
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccc
Q 048801 395 LQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEE 474 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~ 474 (1715)
+|...|.++.++ +.++++|+.||+|.||++.+ .+++..+.+|...|.++.+.+.
T Consensus 329 ~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~---------~~cl~sl~gH~~~V~sl~~~~~--------------- 382 (537)
T KOG0274|consen 329 GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT---------GKCLKSLSGHTGRVYSLIVDSE--------------- 382 (537)
T ss_pred cccccEEEEEec--CCEEEEEecCceEEEEEhhh---------ceeeeeecCCcceEEEEEecCc---------------
Confidence 267889999997 78999999999999999986 4568999999999999988752
Q ss_pred ccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC
Q 048801 475 NVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS 554 (1715)
Q Consensus 475 ~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS 554 (1715)
..+++|+.|++|++||+.+.. .++..+.+|..-+..+.+
T Consensus 383 ------------~~~~Sgs~D~~IkvWdl~~~~----------------------------~c~~tl~~h~~~v~~l~~- 421 (537)
T KOG0274|consen 383 ------------NRLLSGSLDTTIKVWDLRTKR----------------------------KCIHTLQGHTSLVSSLLL- 421 (537)
T ss_pred ------------ceEEeeeeccceEeecCCchh----------------------------hhhhhhcCCccccccccc-
Confidence 489999999999999998741 234456666666655544
Q ss_pred CCCCEEEEEecCCeEEEEECCCCceEEEEec-CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE
Q 048801 555 LDNRFVLAAIMDCRICVWNAVDGSLVHSLTG-HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 555 PDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g-H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~ 627 (1715)
.+++|++++.|++|++||..++++++++.+ |.+.|.++++. ...+++++.||++++||+.++++++.+-
T Consensus 422 -~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~~~~~~l~ 491 (537)
T KOG0274|consen 422 -RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSGTLIRTLL 491 (537)
T ss_pred -ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccCchhhhhh
Confidence 778999999999999999999999999999 77889988875 4577788999999999999999988774
No 58
>KOG1787 consensus Kinase A-anchor protein Neurobeachin and related BEACH and WD40 repeat proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.2e-27 Score=307.89 Aligned_cols=142 Identities=14% Similarity=0.160 Sum_probs=131.6
Q ss_pred CCccCcccCCchhhHHHHhhhhhhhhhcccccccccchhHHHHHHHHhhccCchh----------------------hHH
Q 048801 12 APSLGKAPLKFSSTVQEMAQLEQQDMVANQVVEADVDLREVYFLIIHFLSSGPCQ----------------------RTL 69 (1715)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~i~ElyfLi~~fL~~gp~~----------------------~~~ 69 (1715)
...|+-.-.=|++++++|++|++ |++||||+||||||+|++|.+.+.+. +.|
T Consensus 590 ~gkfd~~dr~~~sv~~~~r~~l~------d~sdvkelipeffy~p~ll~~~~~~~lg~~~dg~~vi~v~lppwa~~pe~f 663 (1126)
T KOG1787|consen 590 DGKFDHADRAFSSVASSWRRCLR------DTSDVKELIPEFFYFPELLVNSNLYNLGVRVDGEPVIDVVLPPWAKSPEDF 663 (1126)
T ss_pred ccccccchhhHHHHHHHHhhhcc------chhhHHHhhhHHHHHHHHHhccccccceeecCCccceeeecccccCCHHHH
Confidence 44566666779999999999999 99999999999999999999887552 789
Q ss_pred HHHHHHHHhcCCCccccccc----cccCCCCCCCCCCCCCccccCcccccccCCCCChHHH-HHHHHHHHhcCCCCCCCc
Q 048801 70 GLLWNELLEHQLLPRRYHAW----FSRSGVNSGNDNDDGISFPLSYNKLVERYPHIEWDHL-VKLLRQLLLYKASPFHGR 144 (1715)
Q Consensus 70 ~~L~ReALESeyVS~~LH~W----FGyKQrG~eAv~A~NVFh~LTYEG~Vdld~i~dp~~r-~aie~QI~nFGQTP~QL~ 144 (1715)
+.+|||||||+|||+|||+| |||||+|+||++|.|||||+||||+|+++.+.|++.| ++++.||.+|||||+|+|
T Consensus 664 ~~~nr~aLes~fvs~~l~~widlifg~Kq~g~ea~~a~nvf~~~tyeG~v~~~~~~d~~~~~eai~~~i~~f~~~~~~~~ 743 (1126)
T KOG1787|consen 664 ETRNREALESEFVSCQLHQWIDLIFGYKQRGPEAVRAMNVFYYLTYEGAVDLDSITDQVLRTEAIEAQIASFGQTPSQLL 743 (1126)
T ss_pred HHHHHHHhhccccccccchhHHhhhhHhhcCHHHHHhhhhhccCCccccccccccCChhHHHHHHHHHHhhccccchhhh
Confidence 99999999999999999999 9999999999999999999999999999999999999 899999999999999999
Q ss_pred cCCCCCCCCCccccc
Q 048801 145 IGGIAPNAADVPTLL 159 (1715)
Q Consensus 145 ~~pHPPr~~~v~sll 159 (1715)
.++|||+...+...+
T Consensus 744 ~e~~~~~~~~~~~~~ 758 (1126)
T KOG1787|consen 744 QEQHPPRASESKLAL 758 (1126)
T ss_pred hhccCCcchhccccc
Confidence 999999987766544
No 59
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=2.4e-25 Score=243.09 Aligned_cols=294 Identities=18% Similarity=0.245 Sum_probs=238.1
Q ss_pred EEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC
Q 048801 238 KLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG 317 (1715)
Q Consensus 238 ~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg 317 (1715)
.|+||..+++.|.|..+|.+|++++.|.++.||-..+|+.+.++.||++.|+|+..+.+.+.|++|+.|.+++|||+.+|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeCCCCCeEEEEecCCCCcceEEEEe-----cCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCC
Q 048801 318 LPISVLRGHTGAVTAIAFSPRPSAIYQLLSS-----SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSS 392 (1715)
Q Consensus 318 ~~l~~L~gH~~~VtsLafSPdg~~~~~LaSg-----S~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~ 392 (1715)
+++..+. ...+|..+.|+.+++ +++.+ +..+.|.++|++...... ....+...
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn---~~l~~tD~~mg~~~~v~~fdi~~~~~~~------------------~s~ep~~k 142 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGN---LILASTDKQMGYTCFVSVFDIRDDSSDI------------------DSEEPYLK 142 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCc---EEEEEehhhcCcceEEEEEEccCChhhh------------------cccCceEE
Confidence 9999998 667899999999987 33333 335788999987433100 01111222
Q ss_pred CCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccc
Q 048801 393 NGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFK 472 (1715)
Q Consensus 393 ~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~ 472 (1715)
...+...++.+-|.|-+.+|++|..||.|.+||++++. ..+.....|...|+.++++++.
T Consensus 143 I~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~--------~~v~s~~~h~~~Ind~q~s~d~------------ 202 (327)
T KOG0643|consen 143 IPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK--------ELVDSDEEHSSKINDLQFSRDR------------ 202 (327)
T ss_pred ecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc--------eeeechhhhccccccccccCCc------------
Confidence 23345679999999999999999999999999999863 3456667788999999999986
Q ss_pred ccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEE
Q 048801 473 EENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIV 552 (1715)
Q Consensus 473 ~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsla 552 (1715)
.++++++.|.+.++||+.+-..+ .......+|++.+
T Consensus 203 --------------T~FiT~s~Dttakl~D~~tl~v~------------------------------Kty~te~PvN~aa 238 (327)
T KOG0643|consen 203 --------------TYFITGSKDTTAKLVDVRTLEVL------------------------------KTYTTERPVNTAA 238 (327)
T ss_pred --------------ceEEecccCccceeeeccceeeE------------------------------EEeeeccccccee
Confidence 79999999999999999873322 2223456899999
Q ss_pred eCCCCCEEEEEecCCe--EEEEECCCC------------ceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 553 WSLDNRFVLAAIMDCR--ICVWNAVDG------------SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 553 fSPDG~~LaTgs~DGt--I~IWDl~sg------------~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
++|-...++.|+.... |.-=..+.| +.+..+++|-++|++|+||| ++...++|+.||.|+|..+.
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP-dGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC-CCcccccCCCCceEEEEEec
Confidence 9998888887764332 222222223 34567789999999999999 77888999999999997653
No 60
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=7.7e-26 Score=246.91 Aligned_cols=296 Identities=16% Similarity=0.235 Sum_probs=245.8
Q ss_pred EecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEec
Q 048801 280 SCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359 (1715)
Q Consensus 280 tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl 359 (1715)
.++||..+|+.|.++.+|.+|++++.|.++.||--.+|+.+.++.||.+.|+|+...-+.. +|++|+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~---~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSK---HLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcc---eeeeccccceeEEEEc
Confidence 4689999999999999999999999999999999999999999999999999999999887 8999999999999999
Q ss_pred CCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-----CCeEEEEeCCCCCccCC
Q 048801 360 RYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-----DTFARVWSACKSSVEDS 434 (1715)
Q Consensus 360 ~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-----DG~IrVWDl~t~~~~~~ 434 (1715)
.+|+++..+.. +..|..+.|+.+|++++.... .+.|.++|++.... .
T Consensus 82 ~tGk~la~~k~--------------------------~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~--~ 133 (327)
T KOG0643|consen 82 ETGKQLATWKT--------------------------NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSS--D 133 (327)
T ss_pred CCCcEEEEeec--------------------------CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChh--h
Confidence 99998877654 345899999999998887654 46899999985431 1
Q ss_pred CCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccc
Q 048801 435 EQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGR 514 (1715)
Q Consensus 435 ~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~ 514 (1715)
.....++..+..+...++...|.|.+ +.|++|..||.|.+||++++...
T Consensus 134 ~~s~ep~~kI~t~~skit~a~Wg~l~--------------------------~~ii~Ghe~G~is~~da~~g~~~----- 182 (327)
T KOG0643|consen 134 IDSEEPYLKIPTPDSKITSALWGPLG--------------------------ETIIAGHEDGSISIYDARTGKEL----- 182 (327)
T ss_pred hcccCceEEecCCccceeeeeecccC--------------------------CEEEEecCCCcEEEEEcccCcee-----
Confidence 11123456677788999999999976 89999999999999999985421
Q ss_pred ccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEE
Q 048801 515 WTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLD 594 (1715)
Q Consensus 515 ~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLa 594 (1715)
+.....|...|+.+++++|..++++++.|.+.++||+.+.++++++. ...+|++.+
T Consensus 183 -----------------------v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aa 238 (327)
T KOG0643|consen 183 -----------------------VDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAA 238 (327)
T ss_pred -----------------------eechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-eccccccee
Confidence 22234577799999999999999999999999999999999999987 457899999
Q ss_pred EccCCCcEEEEEeCCCc-------------EEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 595 VHPFNPRIAMSAGYDGR-------------TIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 595 fSP~dg~lLaSgs~DGt-------------I~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
++|....+++-||.+-. .++|++-..+.+..+++|-++|.+++|+|||+..++|++||.|+|.-+..
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 99966666655554321 12233333456778889999999999999999999999999999986643
No 61
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=1.9e-25 Score=253.87 Aligned_cols=305 Identities=20% Similarity=0.327 Sum_probs=240.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCC---CCEEEEEeCCCeeEEEECCCC
Q 048801 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN---NTLVASASNDFVIRVWRLPDG 317 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpD---g~lLASGS~DGtIrVWDl~tg 317 (1715)
-|.+.|.+|... +++|+||+.||.++|||.. |+...++.||.++|.+++|--. ...|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 388889998887 7899999999999999976 8999999999999998888543 346999999999999998877
Q ss_pred Cc----eEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCC-CCCccCccCCCCCCCCCCC
Q 048801 318 LP----ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKP-PDAITGKSNVPSNNGPSSS 392 (1715)
Q Consensus 318 ~~----l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~-~~~i~g~~~~~~~~~~~~~ 392 (1715)
.. +....||...|-++...+++. .+++|+.|.+|.||+..+... ..+..... ...............+...
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgt---r~~SgS~D~~lkiWs~~~~~~-~~~E~~s~~rrk~~~~~~~~~~r~P~vt 255 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGT---RFCSGSWDTMLKIWSVETDEE-DELESSSNRRRKKQKREKEGGTRTPLVT 255 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCC---eEEeecccceeeecccCCCcc-ccccccchhhhhhhhhhhcccccCceEE
Confidence 43 344459999999999999998 899999999999999432211 11100000 0000000001113345667
Q ss_pred CCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccc
Q 048801 393 NGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFK 472 (1715)
Q Consensus 393 ~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~ 472 (1715)
..+|...|.++.|++ ...+.+++.|.+|++||+.++.. ...+.+ ...++|+.++|..
T Consensus 256 l~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~---------~~~~~~-~ksl~~i~~~~~~------------ 312 (423)
T KOG0313|consen 256 LEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL---------KSTLTT-NKSLNCISYSPLS------------ 312 (423)
T ss_pred ecccccceeeEEEcC-CCceEeecccceEEEEEeecccc---------eeeeec-CcceeEeeccccc------------
Confidence 788999999999998 66889999999999999988643 233332 3478899998864
Q ss_pred ccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEE
Q 048801 473 EENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIV 552 (1715)
Q Consensus 473 ~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsla 552 (1715)
++|++|+.|..|++||.+++.. ....+.+.+|.+.|.++.
T Consensus 313 --------------~Ll~~gssdr~irl~DPR~~~g--------------------------s~v~~s~~gH~nwVssvk 352 (423)
T KOG0313|consen 313 --------------KLLASGSSDRHIRLWDPRTGDG--------------------------SVVSQSLIGHKNWVSSVK 352 (423)
T ss_pred --------------ceeeecCCCCceeecCCCCCCC--------------------------ceeEEeeecchhhhhhee
Confidence 7999999999999999997531 123456889999999999
Q ss_pred eCCCCC-EEEEEecCCeEEEEECCCCc-eEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 553 WSLDNR-FVLAAIMDCRICVWNAVDGS-LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 553 fSPDG~-~LaTgs~DGtI~IWDl~sg~-~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
|+|... .|++|+.|+++++||+++.. ++..+.+|...|.++.|.. +.++++||.|.+|+|+.-
T Consensus 353 wsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~--~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 353 WSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE--GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred cCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC--CceEEeccCcceEEEecc
Confidence 999665 57889999999999999987 9999999999999999964 678999999999999864
No 62
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=6e-26 Score=245.18 Aligned_cols=291 Identities=21% Similarity=0.323 Sum_probs=251.1
Q ss_pred EEEEcCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 236 IKKLRGHRDAVYCAIFDR---SGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSp---DG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
..+..||+.+|..++||| +|-+|++++.||.-.+-+-+||.-+.++.||.+.|+..++..+-...|+++.|-+.+||
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 345689999999999984 89999999999999999999999999999999999999999999899999999999999
Q ss_pred ECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCC
Q 048801 313 RLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSS 392 (1715)
Q Consensus 313 Dl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~ 392 (1715)
|.-+|..+..+. |..-|.+++|+.+.. +|++|+.+..++|||++..+. +...
T Consensus 87 ~a~tgdelhsf~-hkhivk~~af~~ds~---~lltgg~ekllrvfdln~p~A------------------------pp~E 138 (334)
T KOG0278|consen 87 DAVTGDELHSFE-HKHIVKAVAFSQDSN---YLLTGGQEKLLRVFDLNRPKA------------------------PPKE 138 (334)
T ss_pred hhhhhhhhhhhh-hhheeeeEEecccch---hhhccchHHHhhhhhccCCCC------------------------Cchh
Confidence 999999999887 999999999999987 899999999999999875432 1223
Q ss_pred CCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccc
Q 048801 393 NGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFK 472 (1715)
Q Consensus 393 ~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~ 472 (1715)
...|...|..+-|....+.|++.+.|++||+||.+++.. +..+. ...+|+++.+++++
T Consensus 139 ~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~---------v~sL~-~~s~VtSlEvs~dG------------ 196 (334)
T KOG0278|consen 139 ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE---------VQSLE-FNSPVTSLEVSQDG------------ 196 (334)
T ss_pred hcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE---------EEEEe-cCCCCcceeeccCC------------
Confidence 355688899999999999999999999999999998643 33333 34578999999876
Q ss_pred ccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEE
Q 048801 473 EENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIV 552 (1715)
Q Consensus 473 ~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsla 552 (1715)
.+++....+.|.+||..+-..+ .....+..|.+..
T Consensus 197 ---------------~ilTia~gssV~Fwdaksf~~l------------------------------Ks~k~P~nV~SAS 231 (334)
T KOG0278|consen 197 ---------------RILTIAYGSSVKFWDAKSFGLL------------------------------KSYKMPCNVESAS 231 (334)
T ss_pred ---------------CEEEEecCceeEEeccccccce------------------------------eeccCcccccccc
Confidence 7888888899999998762211 1122345688899
Q ss_pred eCCCCCEEEEEecCCeEEEEECCCCceEEEE-ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce
Q 048801 553 WSLDNRFVLAAIMDCRICVWNAVDGSLVHSL-TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTP 622 (1715)
Q Consensus 553 fSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL-~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~ 622 (1715)
++|+..++++|+.|+.++.||..+|..+..+ ++|.++|.||.|+| ++.+.++|+.||+|+||....++.
T Consensus 232 L~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 232 LHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CCceeeccCCCceEEEEEecCCCc
Confidence 9999999999999999999999999999986 89999999999999 888999999999999999866553
No 63
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=9.5e-25 Score=266.83 Aligned_cols=408 Identities=17% Similarity=0.170 Sum_probs=308.7
Q ss_pred cCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCC-EEEEE
Q 048801 225 KPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT-LVASA 303 (1715)
Q Consensus 225 ~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~-lLASG 303 (1715)
...+.+.+.+.+.+|+++...|+++.=+|--..+|.|..+|+|.|+++..++.+.+++.-.+.|+.++|..||. ++|+|
T Consensus 184 lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~ 263 (910)
T KOG1539|consen 184 LQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASG 263 (910)
T ss_pred EEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEec
Confidence 34456678899999999999999999999889999999999999999999999999995569999999999986 56777
Q ss_pred eCCCeeEEEECCCCCceEEEe-CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccC
Q 048801 304 SNDFVIRVWRLPDGLPISVLR-GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSN 382 (1715)
Q Consensus 304 S~DGtIrVWDl~tg~~l~~L~-gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~ 382 (1715)
+..|.+.+||++..+.+..+. .|.+.|+.+.|.|... .|++++.|..+++|=..++.-.+++
T Consensus 264 ~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep---Vl~ta~~DnSlk~~vfD~~dg~pR~-------------- 326 (910)
T KOG1539|consen 264 RSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP---VLVTAGADNSLKVWVFDSGDGVPRL-------------- 326 (910)
T ss_pred cCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc---eEeeccCCCceeEEEeeCCCCcchh--------------
Confidence 778999999999888777766 7999999999999887 8999999999999976655432221
Q ss_pred CCCCCCCCCCCCCCCcceeEEEEc-cCCCeEEEecCCCeEEEEeCCCCCccCCCCC-------------------ceeee
Q 048801 383 VPSNNGPSSSNGLQSHQILCCAYN-ANGTVFVTGSSDTFARVWSACKSSVEDSEQP-------------------IHELD 442 (1715)
Q Consensus 383 ~~~~~~~~~~~~~h~~~VtslafS-pdG~~LatGs~DG~IrVWDl~t~~~~~~~~~-------------------~~~l~ 442 (1715)
.....+|..+..|+.|. .+|.++.+++.|++++.+++........... ..++.
T Consensus 327 -------LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~ 399 (910)
T KOG1539|consen 327 -------LRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIV 399 (910)
T ss_pred -------eeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcce
Confidence 22345678888899987 6888899999999888887753221100000 00000
Q ss_pred --------------eecCCCCCeeEEEEccCcccccccccccccc------cccccccCCcccCceEEEEcCCCeEEEEe
Q 048801 443 --------------VLSGHENDVNYVQFSGCAVASRSAMSDAFKE------ENVPKFKNSWFCHDNIVTCSRDGSAIIWI 502 (1715)
Q Consensus 443 --------------~l~gH~~~V~sLafspdg~as~~~~~~~~~~------~~~~~~~~s~~~~~~LaSgS~DGsIrIWD 502 (1715)
.+..|.+...+-.|+-... ......+.. ..........+|+++.+.|+..|.|-+|+
T Consensus 400 ~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~---~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 400 EFAFENAREKEWDNVITAHKGKRSAYTWNFRNK---TSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN 476 (910)
T ss_pred eeecccchhhhhcceeEEecCcceEEEEeccCc---ccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence 0111222222222211000 000000000 01111112236789999999999999999
Q ss_pred cCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEE
Q 048801 503 PRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHS 582 (1715)
Q Consensus 503 l~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~t 582 (1715)
+.++...+.++ ....|...|+.++...-++.+++++.+|.+.+||+....++..
T Consensus 477 mQSGi~r~sf~--------------------------~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~ 530 (910)
T KOG1539|consen 477 MQSGIHRKSFG--------------------------DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKS 530 (910)
T ss_pred cccCeeecccc--------------------------cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeee
Confidence 99865433322 2346888999999999999999999999999999999888887
Q ss_pred EecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 583 LTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 583 L~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
+.- ...+.++..+. ...+++.+..|-.|+|+|+.+.+.++.|.+|...|++++|||||++|++++.|+.|++||+.+|
T Consensus 531 l~l-~~~~~~iv~hr-~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 531 LRL-GSSITGIVYHR-VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG 608 (910)
T ss_pred ecc-CCCcceeeeee-hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc
Confidence 763 34467777777 5678888889999999999999999999999999999999999999999999999999999999
Q ss_pred cccc-----ccccceeecCCCccEEEcCCC
Q 048801 663 ESQK-----DAKYDQFFLGDYRPLIRDSLG 687 (1715)
Q Consensus 663 e~~k-----~~~~~~~fs~D~r~L~~d~~g 687 (1715)
.++. .......|+|.|..|+..+.+
T Consensus 609 ~lID~~~vd~~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 609 TLIDGLLVDSPCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred ceeeeEecCCcceeeEECCCCCEEEEEEec
Confidence 8874 334556899999988866443
No 64
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=3.5e-25 Score=258.29 Aligned_cols=301 Identities=22% Similarity=0.329 Sum_probs=231.7
Q ss_pred eEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc----EEEEec-CCCCCeEEEEECCCCCEEEEEeCCCee
Q 048801 235 NIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF----CLASCR-GHEGDITDLAVSSNNTLVASASNDFVI 309 (1715)
Q Consensus 235 ~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk----~l~tL~-gHs~~VtsLafSpDg~lLASGS~DGtI 309 (1715)
.-..|.+|+..|.++++.|.|..|+|||.|.+|++||+.... ..+.|. .-...|.++.|++.|..|++.+....+
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 345688999999999999999999999999999999987432 222222 234579999999999999888888899
Q ss_pred EEEECCCCCceE-------------EEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCC
Q 048801 310 RVWRLPDGLPIS-------------VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDA 376 (1715)
Q Consensus 310 rVWDl~tg~~l~-------------~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~ 376 (1715)
+|+|- .|..+. ..+||...++|.+|+|.... .+++++.||+++|||+...+....+..+.+.
T Consensus 239 kl~DR-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~--~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~-- 313 (641)
T KOG0772|consen 239 KLLDR-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE--EFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA-- 313 (641)
T ss_pred eEEcc-CCceeeeeeccchhhhhhhccCCceeeeeccccccCccc--ceEEecCCCcEEEEecCCchhheeEEeeccC--
Confidence 99995 443322 23589999999999999875 7999999999999999876543333322221
Q ss_pred ccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC--CeeEE
Q 048801 377 ITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN--DVNYV 454 (1715)
Q Consensus 377 i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~--~V~sL 454 (1715)
.+..-.++.|+|+++|.+||+|+.||.|.+|+...... .+ .+..-.+|.. .|+||
T Consensus 314 -----------------~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v----~p--~~~vk~AH~~g~~Itsi 370 (641)
T KOG0772|consen 314 -----------------GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV----RP--VMKVKDAHLPGQDITSI 370 (641)
T ss_pred -----------------CCcccCceeeecCCCcchhhhcccCCceeeeecCCccc----cc--ceEeeeccCCCCceeEE
Confidence 12244589999999999999999999999999854321 22 2344567776 99999
Q ss_pred EEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCC
Q 048801 455 QFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534 (1715)
Q Consensus 455 afspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 534 (1715)
.|+++| ++|++-+.|+++++||++.-+....
T Consensus 371 ~FS~dg--------------------------~~LlSRg~D~tLKvWDLrq~kkpL~----------------------- 401 (641)
T KOG0772|consen 371 SFSYDG--------------------------NYLLSRGFDDTLKVWDLRQFKKPLN----------------------- 401 (641)
T ss_pred Eecccc--------------------------chhhhccCCCceeeeeccccccchh-----------------------
Confidence 999997 8999999999999999986321100
Q ss_pred CCCcccccCCCCCeeEEEeCCCCCEEEEEec------CCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeC
Q 048801 535 GGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM------DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGY 608 (1715)
Q Consensus 535 g~~~~~l~~h~~~VtslafSPDG~~LaTgs~------DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~ 608 (1715)
...-+.....-+.++|||+.++|++|.. .|++++||..+...+..+.-....|..+.|||-=+.++ .|+.
T Consensus 402 ---~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~-~gsg 477 (641)
T KOG0772|consen 402 ---VRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIF-AGSG 477 (641)
T ss_pred ---hhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhee-eecC
Confidence 0111223345677899999999999863 56899999999999999987788899999999544444 5777
Q ss_pred CCcEEEEE
Q 048801 609 DGRTIVWD 616 (1715)
Q Consensus 609 DGtI~VWD 616 (1715)
||+++||=
T Consensus 478 dG~~~vyY 485 (641)
T KOG0772|consen 478 DGTAHVYY 485 (641)
T ss_pred CCceEEEE
Confidence 89998863
No 65
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.7e-24 Score=238.77 Aligned_cols=298 Identities=18% Similarity=0.278 Sum_probs=242.0
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC--CCee
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN--DFVI 309 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~--DGtI 309 (1715)
.+++.+.|..-.+.|+++.|+++|.+|++++.|-+|+|||..+|+.+.++..+.-.|..++|......++.++. |.+|
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 45566677777889999999999999999999999999999999999999999899999999887777777766 8899
Q ss_pred EEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCC
Q 048801 310 RVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGP 389 (1715)
Q Consensus 310 rVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~ 389 (1715)
+.-++.+.+.++.+.||...|++|+.+|-+. .+++++.|++|++||++..++.-.+...
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d---~FlS~S~D~tvrLWDlR~~~cqg~l~~~------------------ 141 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDD---TFLSSSLDKTVRLWDLRVKKCQGLLNLS------------------ 141 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCC---eEEecccCCeEEeeEecCCCCceEEecC------------------
Confidence 9999999999999999999999999999887 8999999999999999977655444321
Q ss_pred CCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccc
Q 048801 390 SSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSD 469 (1715)
Q Consensus 390 ~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~ 469 (1715)
.-..+||.|+|-++|+|.....|++||++.-. ..|........+.....+.+.|+|+|
T Consensus 142 ---------~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~d----kgPF~tf~i~~~~~~ew~~l~FS~dG--------- 199 (311)
T KOG1446|consen 142 ---------GRPIAAFDPEGLIFALANGSELIKLYDLRSFD----KGPFTTFSITDNDEAEWTDLEFSPDG--------- 199 (311)
T ss_pred ---------CCcceeECCCCcEEEEecCCCeEEEEEecccC----CCCceeEccCCCCccceeeeEEcCCC---------
Confidence 12468999999999999988899999998631 23333333333556788999999998
Q ss_pred cccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCee
Q 048801 470 AFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVN 549 (1715)
Q Consensus 470 ~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vt 549 (1715)
+.++.+...+.+.+.|.-+|.....+... .....---
T Consensus 200 -----------------K~iLlsT~~s~~~~lDAf~G~~~~tfs~~--------------------------~~~~~~~~ 236 (311)
T KOG1446|consen 200 -----------------KSILLSTNASFIYLLDAFDGTVKSTFSGY--------------------------PNAGNLPL 236 (311)
T ss_pred -----------------CEEEEEeCCCcEEEEEccCCcEeeeEeec--------------------------cCCCCcce
Confidence 78888999999999998776533222110 00011124
Q ss_pred EEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec-CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 550 MIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG-HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 550 slafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g-H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
..+|+||+++|++|+.||+|.+|++.+|..+..+.+ +.+++.++.|+| .-.++ ++.+..+.+|=..
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP-~~~mf--~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP-RYAMF--VSASSNLVFWLPD 303 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC-ceeee--eecCceEEEEecc
Confidence 678999999999999999999999999999999998 799999999988 33344 4456778888654
No 66
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=4.9e-26 Score=260.72 Aligned_cols=287 Identities=23% Similarity=0.325 Sum_probs=240.2
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--EEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF--CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk--~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
...+..|.+.|..+.|-++...|+||+.|..|++|++...+ .+.+|.|..+.|+++.|.++++.+++++.|+.+++|+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 44578899999999999998899999999999999997766 7788999999999999999999999999999999999
Q ss_pred CCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCC
Q 048801 314 LPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSN 393 (1715)
Q Consensus 314 l~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~ 393 (1715)
+...+...+|.||++.|+++.|..... .+++|+.|.+|++||+....+..++..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~~---~vVsgs~DRtiK~WDl~k~~C~kt~l~----------------------- 301 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSHS---RVVSGSADRTIKLWDLQKAYCSKTVLP----------------------- 301 (459)
T ss_pred ccchhhhhhhcccccceeeehhhcccc---ceeeccccchhhhhhhhhhheeccccc-----------------------
Confidence 999999999999999999999998765 599999999999999988776555432
Q ss_pred CCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccc
Q 048801 394 GLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKE 473 (1715)
Q Consensus 394 ~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~ 473 (1715)
...+..|+.+ +..+++|..|+.|++||+++.. +......+. .|+++..+.++
T Consensus 302 ---~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~---------~~~sv~~gg-~vtSl~ls~~g------------- 353 (459)
T KOG0288|consen 302 ---GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSAD---------KTRSVPLGG-RVTSLDLSMDG------------- 353 (459)
T ss_pred ---cccccceEec--ceeeeecccccceEEEeccCCc---------eeeEeecCc-ceeeEeeccCC-------------
Confidence 2234445544 5678899999999999998753 344555554 89999999886
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEe
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW 553 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtslaf 553 (1715)
..|++++.|.++.+.|+++......+.. .-.......+.++|
T Consensus 354 -------------~~lLsssRDdtl~viDlRt~eI~~~~sA-------------------------~g~k~asDwtrvvf 395 (459)
T KOG0288|consen 354 -------------LELLSSSRDDTLKVIDLRTKEIRQTFSA-------------------------EGFKCASDWTRVVF 395 (459)
T ss_pred -------------eEEeeecCCCceeeeecccccEEEEeec-------------------------cccccccccceeEE
Confidence 6888889999999999997553322110 00111234888999
Q ss_pred CCCCCEEEEEecCCeEEEEECCCCceEEEEecCCC--CeEEEEEccCCCcEEEEEeCCCcEEEE
Q 048801 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSA--SSYVLDVHPFNPRIAMSAGYDGRTIVW 615 (1715)
Q Consensus 554 SPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~--~V~sLafSP~dg~lLaSgs~DGtI~VW 615 (1715)
||++.|+++|+.||.|+||++.++++...+..... .|++++|+| .|..|++++.++.+.+|
T Consensus 396 Spd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 396 SPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEec
Confidence 99999999999999999999999999999876544 499999999 77888899999999999
No 67
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.1e-25 Score=275.94 Aligned_cols=264 Identities=20% Similarity=0.347 Sum_probs=203.7
Q ss_pred ccceeEEEEc-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC--------------------------------C--
Q 048801 231 QKMQNIKKLR-GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET--------------------------------A-- 275 (1715)
Q Consensus 231 ~~~k~l~~L~-GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~t--------------------------------g-- 275 (1715)
......+.+. +|.++|.|+.||+||+|||+||.||.|+||.+.. .
T Consensus 254 sal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~ 333 (712)
T KOG0283|consen 254 SALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKIS 333 (712)
T ss_pred eeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccc
Confidence 3445566677 9999999999999999999999999999998754 0
Q ss_pred --------------------------cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCC
Q 048801 276 --------------------------FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGA 329 (1715)
Q Consensus 276 --------------------------k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~ 329 (1715)
+++..|.||.+.|.+|.||.++ +|++++.|.+|+||++....++.+|. |..-
T Consensus 334 ~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-Hndf 411 (712)
T KOG0283|consen 334 SRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDF 411 (712)
T ss_pred ccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCe
Confidence 1223467999999999999665 88999999999999999999999998 9999
Q ss_pred eEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC
Q 048801 330 VTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG 409 (1715)
Q Consensus 330 VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG 409 (1715)
||||+|+|.+.. ||++|+-||.|+||++...+.+.-..+ ..-|++++|.|||
T Consensus 412 VTcVaFnPvDDr--yFiSGSLD~KvRiWsI~d~~Vv~W~Dl--------------------------~~lITAvcy~PdG 463 (712)
T KOG0283|consen 412 VTCVAFNPVDDR--YFISGSLDGKVRLWSISDKKVVDWNDL--------------------------RDLITAVCYSPDG 463 (712)
T ss_pred eEEEEecccCCC--cEeecccccceEEeecCcCeeEeehhh--------------------------hhhheeEEeccCC
Confidence 999999997764 899999999999999986654322111 2459999999999
Q ss_pred CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceE
Q 048801 410 TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNI 489 (1715)
Q Consensus 410 ~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~L 489 (1715)
+..++|+.+|.+++|++...++....+-...-..-..|. .|+.++|.|.. .+.+
T Consensus 464 k~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~-------------------------~~~v 517 (712)
T KOG0283|consen 464 KGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGD-------------------------PDEV 517 (712)
T ss_pred ceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCC-------------------------CCeE
Confidence 999999999999999998754322111000000111233 89999999854 3578
Q ss_pred EEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeE
Q 048801 490 VTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRI 569 (1715)
Q Consensus 490 aSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI 569 (1715)
++.+.|..|+|+|.++...+.++.... ....-....|+.||++|++|+.|..|
T Consensus 518 LVTSnDSrIRI~d~~~~~lv~KfKG~~---------------------------n~~SQ~~Asfs~Dgk~IVs~seDs~V 570 (712)
T KOG0283|consen 518 LVTSNDSRIRIYDGRDKDLVHKFKGFR---------------------------NTSSQISASFSSDGKHIVSASEDSWV 570 (712)
T ss_pred EEecCCCceEEEeccchhhhhhhcccc---------------------------cCCcceeeeEccCCCEEEEeecCceE
Confidence 888999999999997644333321110 11123456889999999999999999
Q ss_pred EEEECCCC
Q 048801 570 CVWNAVDG 577 (1715)
Q Consensus 570 ~IWDl~sg 577 (1715)
+||+....
T Consensus 571 YiW~~~~~ 578 (712)
T KOG0283|consen 571 YIWKNDSF 578 (712)
T ss_pred EEEeCCCC
Confidence 99998543
No 68
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=3.7e-24 Score=255.56 Aligned_cols=381 Identities=15% Similarity=0.188 Sum_probs=265.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecC-C-----------------------CCCeEEEEECCCCCEEE
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRG-H-----------------------EGDITDLAVSSNNTLVA 301 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~g-H-----------------------s~~VtsLafSpDg~lLA 301 (1715)
..|++.+ .++|+.|..+|.|+||+.++...+.+|.. | --...++.|++....|.
T Consensus 263 AnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~kls 340 (1080)
T KOG1408|consen 263 ANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLS 340 (1080)
T ss_pred cceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEE
Confidence 4555555 57999999999999999877655544421 1 11234678999999999
Q ss_pred EEeCCCeeEEEECCCCCce---EEEeCCCCCeEEEEecCCC-Cc-------ceEEEEecCCCcEEEEecCCCCCcceec-
Q 048801 302 SASNDFVIRVWRLPDGLPI---SVLRGHTGAVTAIAFSPRP-SA-------IYQLLSSSDDGTCRIWDARYSQYSPRIY- 369 (1715)
Q Consensus 302 SGS~DGtIrVWDl~tg~~l---~~L~gH~~~VtsLafSPdg-~~-------~~~LaSgS~DGtVrIWDl~tg~~l~~i~- 369 (1715)
+...|..++|||+++-..+ ..+--|...|+.+.-.|-+ .. ...+++++.|++|++|++..+..-..+.
T Consensus 341 cVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrR 420 (1080)
T KOG1408|consen 341 CVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRR 420 (1080)
T ss_pred EEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeec
Confidence 9999999999999874332 2333588888888766621 00 0168999999999999997632211110
Q ss_pred ------------CCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCC
Q 048801 370 ------------LPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQP 437 (1715)
Q Consensus 370 ------------~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~ 437 (1715)
.....+.+.. ...................|.+++++|+|++||+|..-|.++||++..
T Consensus 421 Nils~~l~ki~y~d~~~q~~~d-~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~--------- 490 (1080)
T KOG1408|consen 421 NILSANLSKIPYEDSTQQIMHD-ASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE--------- 490 (1080)
T ss_pred ccchhhhhcCccccCchhhhhh-ccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehh---------
Confidence 0000000000 000001111122223345699999999999999999999999999965
Q ss_pred ceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCcc-Cccccc-c
Q 048801 438 IHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS-HGKVGR-W 515 (1715)
Q Consensus 438 ~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~-~~~~~~-~ 515 (1715)
...+..+.+|...|.|+.|+-... ..++|++++.|..|.|||+...-. ...+.. .
T Consensus 491 l~~~~~~eAHesEilcLeyS~p~~-----------------------~~kLLASasrdRlIHV~Dv~rny~l~qtld~HS 547 (1080)
T KOG1408|consen 491 LEYTCFMEAHESEILCLEYSFPVL-----------------------TNKLLASASRDRLIHVYDVKRNYDLVQTLDGHS 547 (1080)
T ss_pred hhhhhheecccceeEEEeecCchh-----------------------hhHhhhhccCCceEEEEecccccchhhhhcccc
Confidence 345667889999999999985321 136899999999999999864211 111100 0
Q ss_pred cccccccCCCCCCC----------------CCCCCCC---CcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC
Q 048801 516 TRAYHLKVPPPPLP----------------PQPPRGG---PRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD 576 (1715)
Q Consensus 516 ~~~~~l~~~~~~~~----------------~~~~~g~---~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s 576 (1715)
.....++....... .+....+ +...-.-....+..++..|..+++++++.|..|+||++.+
T Consensus 548 ssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~s 627 (1080)
T KOG1408|consen 548 SSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIES 627 (1080)
T ss_pred cceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccc
Confidence 00000010000000 0000000 0111111234578899999999999999999999999999
Q ss_pred CceEEEEec---CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCe
Q 048801 577 GSLVHSLTG---HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQ 653 (1715)
Q Consensus 577 g~~l~tL~g---H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~ 653 (1715)
|++.+.|++ |.+....+...| .+.+|++...|.++.++|+.+|++++...+|...|+.+.|++|-+.|++.+.||+
T Consensus 628 gKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgC 706 (1080)
T KOG1408|consen 628 GKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGC 706 (1080)
T ss_pred cceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCce
Confidence 999999974 667788889999 8899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCC
Q 048801 654 IYLLNTGQG 662 (1715)
Q Consensus 654 I~IWdl~tG 662 (1715)
|.||.+...
T Consensus 707 IFvW~lp~~ 715 (1080)
T KOG1408|consen 707 IFVWKLPLT 715 (1080)
T ss_pred EEEEECchh
Confidence 999998653
No 69
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=2.9e-24 Score=234.16 Aligned_cols=287 Identities=19% Similarity=0.252 Sum_probs=241.6
Q ss_pred EEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEE--EeCCCCCeEEEEecCCCCcceEEEEecCCCcEEE
Q 048801 279 ASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISV--LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356 (1715)
Q Consensus 279 ~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~--L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrI 356 (1715)
+.+++|...|.+++|+.+|..|++|+.|+++.||+++.++.+.. ..+|.+.|-.++|.|..+. .|++++.|.+|++
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d--~~atas~dk~ir~ 91 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPD--LFATASGDKTIRI 91 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCc--ceEEecCCceEEE
Confidence 45678999999999999999999999999999999987755543 4689999999999998765 7999999999999
Q ss_pred EecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCC
Q 048801 357 WDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQ 436 (1715)
Q Consensus 357 WDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~ 436 (1715)
||++.+++...+... ..=.-+.|+|+|.++++++.|..|.+.|.++.+...
T Consensus 92 wd~r~~k~~~~i~~~--------------------------~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~--- 142 (313)
T KOG1407|consen 92 WDIRSGKCTARIETK--------------------------GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVN--- 142 (313)
T ss_pred EEeccCcEEEEeecc--------------------------CcceEEEEcCCCCEEEEecCcccEEEEEecccceee---
Confidence 999999877665431 223468899999999999999999999998754311
Q ss_pred CceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccc
Q 048801 437 PIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWT 516 (1715)
Q Consensus 437 ~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~ 516 (1715)
-....-.++.+.|+-+. ++++.....|+|.|.....
T Consensus 143 -------~~~~~~e~ne~~w~~~n--------------------------d~Fflt~GlG~v~ILsyps----------- 178 (313)
T KOG1407|consen 143 -------EEQFKFEVNEISWNNSN--------------------------DLFFLTNGLGCVEILSYPS----------- 178 (313)
T ss_pred -------hhcccceeeeeeecCCC--------------------------CEEEEecCCceEEEEeccc-----------
Confidence 11223356677777443 6777777789999976542
Q ss_pred ccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEc
Q 048801 517 RAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVH 596 (1715)
Q Consensus 517 ~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafS 596 (1715)
..++..+..|+....||.|+|+|+++|+|+.|..+.+||+...-+++.+..+.-+|..|.|+
T Consensus 179 ------------------Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS 240 (313)
T KOG1407|consen 179 ------------------LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFS 240 (313)
T ss_pred ------------------cccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEec
Confidence 34667788999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCC---------CeEEEEECC
Q 048801 597 PFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDV---------GQIYLLNTG 660 (1715)
Q Consensus 597 P~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~D---------G~I~IWdl~ 660 (1715)
. ++++||+|+.|..|-|=++.+|..+..++ +.++...|+|+|...+||.+++| |.|+||.+.
T Consensus 241 ~-dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 241 H-DGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred c-CcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 8 89999999999999999999999999998 78899999999999999977553 566766553
No 70
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=9.7e-25 Score=241.28 Aligned_cols=297 Identities=25% Similarity=0.428 Sum_probs=250.1
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEE
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRV 311 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrV 311 (1715)
..++++.|.||.+.|+.|+.......+.|++.|.+-+||.+++|.|+.++.||.+.|++|.|++.+.++++++.|++..|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 35677889999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred EE------CCC----------------------------------CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCC
Q 048801 312 WR------LPD----------------------------------GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD 351 (1715)
Q Consensus 312 WD------l~t----------------------------------g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D 351 (1715)
|. +.. ..++..|.+|.+.|.+..|...+. .++++++|
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~---Q~vTaSWD 293 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ---QMVTASWD 293 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc---eeeeeecc
Confidence 96 211 024567889999999999999887 89999999
Q ss_pred CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCc
Q 048801 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSV 431 (1715)
Q Consensus 352 GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~ 431 (1715)
.+..+||+.++..+.. ..+|....+.++-+|..+++++.+.|.+.++||++..
T Consensus 294 RTAnlwDVEtge~v~~-------------------------LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea-- 346 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNI-------------------------LTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA-- 346 (481)
T ss_pred ccceeeeeccCceecc-------------------------ccCcchhccccccCCcceEEEEeccCceeEeccchhh--
Confidence 9999999999875433 3457888999999999999999999999999999742
Q ss_pred cCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcc
Q 048801 432 EDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGK 511 (1715)
Q Consensus 432 ~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~ 511 (1715)
++.+..+.||...|+++.|..+ +.+++|+.|.+|+|||+++.+.
T Consensus 347 ------I~sV~VFQGHtdtVTS~vF~~d---------------------------d~vVSgSDDrTvKvWdLrNMRs--- 390 (481)
T KOG0300|consen 347 ------IQSVAVFQGHTDTVTSVVFNTD---------------------------DRVVSGSDDRTVKVWDLRNMRS--- 390 (481)
T ss_pred ------cceeeeecccccceeEEEEecC---------------------------CceeecCCCceEEEeeeccccC---
Confidence 5668899999999999999875 6899999999999999986331
Q ss_pred cccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEE----EEecCC
Q 048801 512 VGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVH----SLTGHS 587 (1715)
Q Consensus 512 ~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~----tL~gH~ 587 (1715)
++. ......+++.++.+..+..|+.-..+..|++||+...++.+ .-.+|.
T Consensus 391 -------------------------plA-TIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHr 444 (481)
T KOG0300|consen 391 -------------------------PLA-TIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHR 444 (481)
T ss_pred -------------------------cce-eeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccc
Confidence 111 12235678899999999999999999999999986443322 235899
Q ss_pred CCeEEEEEccCCC-cEEEEEeCCCcEEEEECCCC
Q 048801 588 ASSYVLDVHPFNP-RIAMSAGYDGRTIVWDIWEG 620 (1715)
Q Consensus 588 ~~V~sLafSP~dg-~lLaSgs~DGtI~VWDl~tg 620 (1715)
..|+|++|....+ .-|+++|.|..+.-|.+...
T Consensus 445 RMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 445 RMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9999999965222 34678999999999998653
No 71
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=9.6e-24 Score=230.18 Aligned_cols=277 Identities=19% Similarity=0.279 Sum_probs=235.2
Q ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEE--ecCCCCCeEEEEECC-CCCEEEEEeCCCeeEEEE
Q 048801 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLAS--CRGHEGDITDLAVSS-NNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 237 ~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~t--L~gHs~~VtsLafSp-Dg~lLASGS~DGtIrVWD 313 (1715)
+.+++|...|.+|+|.-+|..|++|+.|+++.+|+++..+.... .++|.+.|-.++|+| ...+|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 56789999999999999999999999999999999987765544 578999999999998 457899999999999999
Q ss_pred CCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCC
Q 048801 314 LPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSN 393 (1715)
Q Consensus 314 l~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~ 393 (1715)
+..++++..+....+ =.-+.|+|++. +++.++.|..|.+.|.++.+.......
T Consensus 94 ~r~~k~~~~i~~~~e-ni~i~wsp~g~---~~~~~~kdD~it~id~r~~~~~~~~~~----------------------- 146 (313)
T KOG1407|consen 94 IRSGKCTARIETKGE-NINITWSPDGE---YIAVGNKDDRITFIDARTYKIVNEEQF----------------------- 146 (313)
T ss_pred eccCcEEEEeeccCc-ceEEEEcCCCC---EEEEecCcccEEEEEecccceeehhcc-----------------------
Confidence 999999998874444 45678999998 899999999999999987664433221
Q ss_pred CCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccc
Q 048801 394 GLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKE 473 (1715)
Q Consensus 394 ~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~ 473 (1715)
...+.-++|+-++.+|+.....|.|.|..... ++++..+.+|.....||.|+|+|
T Consensus 147 ---~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps---------Lkpv~si~AH~snCicI~f~p~G------------- 201 (313)
T KOG1407|consen 147 ---KFEVNEISWNNSNDLFFLTNGLGCVEILSYPS---------LKPVQSIKAHPSNCICIEFDPDG------------- 201 (313)
T ss_pred ---cceeeeeeecCCCCEEEEecCCceEEEEeccc---------cccccccccCCcceEEEEECCCC-------------
Confidence 33477888988888877777789999998864 56788999999999999999997
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEe
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW 553 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtslaf 553 (1715)
++|++|+.|..+.+||+..- .+...+..+.-+|+.+.|
T Consensus 202 -------------ryfA~GsADAlvSLWD~~EL-----------------------------iC~R~isRldwpVRTlSF 239 (313)
T KOG1407|consen 202 -------------RYFATGSADALVSLWDVDEL-----------------------------ICERCISRLDWPVRTLSF 239 (313)
T ss_pred -------------ceEeeccccceeeccChhHh-----------------------------hhheeeccccCceEEEEe
Confidence 89999999999999998741 234455667889999999
Q ss_pred CCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCC
Q 048801 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYD 609 (1715)
Q Consensus 554 SPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~D 609 (1715)
|.||++||+|+.|..|-|=++.+|..+..+. +.++.+.|+||| ...+||-++.|
T Consensus 240 S~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~dd 293 (313)
T KOG1407|consen 240 SHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDD 293 (313)
T ss_pred ccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecC
Confidence 9999999999999999999999999999987 778889999999 66677666544
No 72
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=6.8e-23 Score=238.85 Aligned_cols=386 Identities=18% Similarity=0.245 Sum_probs=283.0
Q ss_pred eEEEEcCCCCCeEEEEEcCCCCEEEEEeCCC--------cEEEEeCCCCcEEEEecCCCCCeEEEEECC--CCCEEEEE-
Q 048801 235 NIKKLRGHRDAVYCAIFDRSGRFVITGSDDR--------LVKIWSMETAFCLASCRGHEGDITDLAVSS--NNTLVASA- 303 (1715)
Q Consensus 235 ~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DG--------tIrIWDl~tgk~l~tL~gHs~~VtsLafSp--Dg~lLASG- 303 (1715)
..+.+.||...|.|++.+||.-.+++|-.-| .|+|||..+...+..+......|+|++||+ .|.+|+..
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD 175 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVD 175 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEec
Confidence 3455779999999999999998888875444 599999988888888888888999999998 35566554
Q ss_pred -eCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccC
Q 048801 304 -SNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSN 382 (1715)
Q Consensus 304 -S~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~ 382 (1715)
+.+..+.|||+..+............|....|+|.+. .|+.....|.+.+|+++.+.+..+..+....
T Consensus 176 ~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~---nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~-------- 244 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDP---NLIITCGKGHLYFWTLRGGSLVKRQGIFEKR-------- 244 (626)
T ss_pred CCCccccchhhchhhhccCcceeccceEEEEEeccCCC---cEEEEeCCceEEEEEccCCceEEEeeccccc--------
Confidence 3456789999998887777777778899999999987 4555555688999999988766554322111
Q ss_pred CCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccc
Q 048801 383 VPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVA 462 (1715)
Q Consensus 383 ~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~a 462 (1715)
....|.|++|.++|. +++|.++|.|.||+..+.+ ..+....|.+.|.+++...+|
T Consensus 245 -------------ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~---------~~k~~~aH~ggv~~L~~lr~G-- 299 (626)
T KOG2106|consen 245 -------------EKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNR---------ISKQVHAHDGGVFSLCMLRDG-- 299 (626)
T ss_pred -------------cceEEEEEEEcCCCC-EEeecCCceEEEEeCCCce---------EEeEeeecCCceEEEEEecCc--
Confidence 124599999999997 6789999999999986643 233344899999999998876
Q ss_pred ccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccc------cccccc----c--cCCCCCCCC
Q 048801 463 SRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGR------WTRAYH----L--KVPPPPLPP 530 (1715)
Q Consensus 463 s~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~------~~~~~~----l--~~~~~~~~~ 530 (1715)
.|++|+.|..|..||-. -+....+.. ....+. + -........
T Consensus 300 -------------------------tllSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~ 353 (626)
T KOG2106|consen 300 -------------------------TLLSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQ 353 (626)
T ss_pred -------------------------cEeecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEE
Confidence 78889999999999822 111111000 000000 0 000000000
Q ss_pred CCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCC
Q 048801 531 QPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDG 610 (1715)
Q Consensus 531 ~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DG 610 (1715)
............+|......++..|+...++|++.|+.+++|+ ..+++.+.. -..++.|+.|+| .+ .++.|...|
T Consensus 354 Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~G 428 (626)
T KOG2106|consen 354 GTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTATG 428 (626)
T ss_pred eeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeeccc
Confidence 1112233345567888899999999999999999999999999 455555443 356788999999 44 888999999
Q ss_pred cEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc--------cccccceeecCCCccEE
Q 048801 611 RTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ--------KDAKYDQFFLGDYRPLI 682 (1715)
Q Consensus 611 tI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~--------k~~~~~~~fs~D~r~L~ 682 (1715)
...|.|..+...+..-. ...++.+++|+|||.+||+|+.|+.|+||.+..+... -.....+-|+.|+..|.
T Consensus 429 ~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~ 507 (626)
T KOG2106|consen 429 RWFVLDTETQDLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLV 507 (626)
T ss_pred eEEEEecccceeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEE
Confidence 99999998865555544 4889999999999999999999999999998754322 12234456888888777
Q ss_pred EcCCCC
Q 048801 683 RDSLGN 688 (1715)
Q Consensus 683 ~d~~g~ 688 (1715)
..+.+.
T Consensus 508 ~~S~d~ 513 (626)
T KOG2106|consen 508 SNSGDY 513 (626)
T ss_pred eccCce
Confidence 655444
No 73
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=4.7e-24 Score=269.32 Aligned_cols=295 Identities=23% Similarity=0.340 Sum_probs=237.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEeCCC------------CcEEEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 048801 241 GHRDAVYCAIFDRSGRFVITGS--DDRLVKIWSMET------------AFCLASCRGHEGDITDLAVSSNNTLVASASND 306 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS--~DGtIrIWDl~t------------gk~l~tL~gHs~~VtsLafSpDg~lLASGS~D 306 (1715)
.+...|.++..+|||..+|||| .||.++||+.+. .+.+.+...|.+.|+|+.|++||++||+|++|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3456799999999999999999 899999998642 24456677899999999999999999999999
Q ss_pred CeeEEEECCC------------------CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCccee
Q 048801 307 FVIRVWRLPD------------------GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRI 368 (1715)
Q Consensus 307 GtIrVWDl~t------------------g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i 368 (1715)
+.|.||.... .+.+..+.+|...|..++|+|++. +|++++.|++|.||+..+.+.+..+
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~---~lvS~s~DnsViiwn~~tF~~~~vl 167 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS---LLVSVSLDNSVIIWNAKTFELLKVL 167 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc---EEEEecccceEEEEccccceeeeee
Confidence 9999998762 135678899999999999999987 9999999999999999877544433
Q ss_pred cCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCC
Q 048801 369 YLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE 448 (1715)
Q Consensus 369 ~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~ 448 (1715)
..|...|..+.|.|-|++||+-+.|++|+||++.+-. ..+.+.++.
T Consensus 168 -------------------------~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~---------i~k~It~pf 213 (942)
T KOG0973|consen 168 -------------------------RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG---------IEKSITKPF 213 (942)
T ss_pred -------------------------ecccccccceEECCccCeeeeecCCceEEEEEcccce---------eeEeeccch
Confidence 3467779999999999999999999999999975421 111111111
Q ss_pred CCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCC
Q 048801 449 NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPL 528 (1715)
Q Consensus 449 ~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~ 528 (1715)
..
T Consensus 214 ~~------------------------------------------------------------------------------ 215 (942)
T KOG0973|consen 214 EE------------------------------------------------------------------------------ 215 (942)
T ss_pred hh------------------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEec----CCeEEEEECCCCceEEEEecCCCCeEEEEEccC------
Q 048801 529 PPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM----DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPF------ 598 (1715)
Q Consensus 529 ~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~----DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~------ 598 (1715)
.....-+..+.|||||.+|+++.. -.++.|.+-.+.+.-..|.||.+++.++.|+|.
T Consensus 216 -------------~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~ 282 (942)
T KOG0973|consen 216 -------------SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNN 282 (942)
T ss_pred -------------CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhcccc
Confidence 001123556889999999988532 346888888888888899999999999999872
Q ss_pred C------C----cEEEEEeCCCcEEEEECCCCceEEEEEc-ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 048801 599 N------P----RIAMSAGYDGRTIVWDIWEGTPIRIYEI-GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 599 d------g----~lLaSgs~DGtI~VWDl~tgk~l~tl~~-h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe 663 (1715)
. + .++|+|+.|++|-||.....+++..... ....|.+++|+|||-.|++++.||.|.++.+...+
T Consensus 283 ~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 283 KNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred ccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 1 1 1789999999999999987787765542 35579999999999999999999999999997754
No 74
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=7.3e-24 Score=266.33 Aligned_cols=281 Identities=26% Similarity=0.407 Sum_probs=245.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEE-EeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCC
Q 048801 284 HEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISV-LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYS 362 (1715)
Q Consensus 284 Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~-L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg 362 (1715)
+...|.+..|. +.++++++.|++|++|+..++..+.. +.||.+.|++++|...+. .|++|+.|.++++||+.+|
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~---~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGD---KLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCC---EEEEEecCCcEEeEecCCC
Confidence 56788888887 56899999999999999999999888 999999999999987444 8999999999999999999
Q ss_pred CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeee
Q 048801 363 QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442 (1715)
Q Consensus 363 ~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~ 442 (1715)
++...+. +|...|.|+... +..+++|+.|.+|++|++.++ ..+.
T Consensus 282 ~C~~~l~-------------------------gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~---------~~l~ 325 (537)
T KOG0274|consen 282 ECTHSLQ-------------------------GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNG---------ACLN 325 (537)
T ss_pred cEEEEec-------------------------CCCceEEEEEcc--CceEeeccCCceEEEEeccCc---------ceEE
Confidence 9876653 356667777764 457888999999999999875 4578
Q ss_pred eecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccccccccc
Q 048801 443 VLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLK 522 (1715)
Q Consensus 443 ~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~ 522 (1715)
.+.+|.++|+++..+. ..+++|+.||+|++||+.++
T Consensus 326 l~~~h~~~V~~v~~~~----------------------------~~lvsgs~d~~v~VW~~~~~---------------- 361 (537)
T KOG0274|consen 326 LLRGHTGPVNCVQLDE----------------------------PLLVSGSYDGTVKVWDPRTG---------------- 361 (537)
T ss_pred EeccccccEEEEEecC----------------------------CEEEEEecCceEEEEEhhhc----------------
Confidence 8888999999999983 69999999999999999863
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCC-ceEEEEecCCCCeEEEEEccCCCc
Q 048801 523 VPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG-SLVHSLTGHSASSYVLDVHPFNPR 601 (1715)
Q Consensus 523 ~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg-~~l~tL~gH~~~V~sLafSP~dg~ 601 (1715)
.++..+.+|...|.++.+... ..+++|+.|++|++||+.++ +++.++.+|.+.|..+.+ .+.
T Consensus 362 -------------~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~---~~~ 424 (537)
T KOG0274|consen 362 -------------KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL---RDN 424 (537)
T ss_pred -------------eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc---ccc
Confidence 355667889999999988766 89999999999999999999 999999999999988877 457
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEEc-ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccccc
Q 048801 602 IAMSAGYDGRTIVWDIWEGTPIRIYEI-GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDA 668 (1715)
Q Consensus 602 lLaSgs~DGtI~VWDl~tgk~l~tl~~-h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~~ 668 (1715)
+|++++.||+|++||+.+++++.++.+ +.+.|..+++. ...+++++.+|.+.+||+.+|+.....
T Consensus 425 ~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 425 FLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred eeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 899999999999999999999999998 56888888887 456889999999999999999876543
No 75
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.6e-24 Score=259.03 Aligned_cols=332 Identities=20% Similarity=0.311 Sum_probs=260.5
Q ss_pred EEEEc-CCCCEEEEEeCCCcEEEEeCCCC------cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC--C
Q 048801 248 CAIFD-RSGRFVITGSDDRLVKIWSMETA------FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG--L 318 (1715)
Q Consensus 248 ~VafS-pDG~~LaTGS~DGtIrIWDl~tg------k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg--~ 318 (1715)
++..+ |.++||+|||.||.|++|++..- ..+..+..|...|.+++...+++.|+++|.|-+|++|+...+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 33344 46788999999999999998532 246788899999999999999999999999999999999877 6
Q ss_pred ceEEEeCCCCCeEEEEe-cCCCCcceEEEEecCCCcEEEEecCCCCC--cceecCCCCCCCccCccCCCCCCCCCCCCC-
Q 048801 319 PISVLRGHTGAVTAIAF-SPRPSAIYQLLSSSDDGTCRIWDARYSQY--SPRIYLPKPPDAITGKSNVPSNNGPSSSNG- 394 (1715)
Q Consensus 319 ~l~~L~gH~~~VtsLaf-SPdg~~~~~LaSgS~DGtVrIWDl~tg~~--l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~- 394 (1715)
++.++..|...|.||++ .++.. ++++||.|+.|.+||++++.. +.++ .+.......
T Consensus 109 c~stir~H~DYVkcla~~ak~~~---lvaSgGLD~~IflWDin~~~~~l~~s~-----------------n~~t~~sl~s 168 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNE---LVASGGLDRKIFLWDINTGTATLVASF-----------------NNVTVNSLGS 168 (735)
T ss_pred hHhhhhcccchheeeeecccCce---eEEecCCCccEEEEEccCcchhhhhhc-----------------cccccccCCC
Confidence 78889999999999999 55554 899999999999999998732 2111 111112222
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccc
Q 048801 395 LQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEE 474 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~ 474 (1715)
++...|.+++.++.|..|++|+..+.|++||.++. ..+..+.||+..|.++..+++|
T Consensus 169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~---------~kimkLrGHTdNVr~ll~~dDG-------------- 225 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC---------KKIMKLRGHTDNVRVLLVNDDG-------------- 225 (735)
T ss_pred CCccceeeeecCCcceEEEecCcccceEEeccccc---------cceeeeeccccceEEEEEcCCC--------------
Confidence 66788999999999999999999999999999885 3467788999999999999987
Q ss_pred ccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC
Q 048801 475 NVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS 554 (1715)
Q Consensus 475 ~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS 554 (1715)
..+++++.||+|++||+...+ ++.++..|..+|.++..+
T Consensus 226 ------------t~~ls~sSDgtIrlWdLgqQr-----------------------------Cl~T~~vH~e~VWaL~~~ 264 (735)
T KOG0308|consen 226 ------------TRLLSASSDGTIRLWDLGQQR-----------------------------CLATYIVHKEGVWALQSS 264 (735)
T ss_pred ------------CeEeecCCCceEEeeeccccc-----------------------------eeeeEEeccCceEEEeeC
Confidence 799999999999999998643 345567788889999999
Q ss_pred CCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-------CceE----
Q 048801 555 LDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE-------GTPI---- 623 (1715)
Q Consensus 555 PDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t-------gk~l---- 623 (1715)
|+-..+++|+.||.|+.=|+++......+-....+|..+..+-.+..+ -++..|+.|+-|...- +.+.
T Consensus 265 ~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~-WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T 343 (735)
T KOG0308|consen 265 PSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSV-WVTTTDSSIKRWKLEPDIALSVSGDLDFFST 343 (735)
T ss_pred CCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCc-eeeeccccceecCCccccccccCCCCCcccc
Confidence 999999999999999999998864444444455667777776534443 4567888899986531 1111
Q ss_pred --------------EEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 624 --------------RIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 624 --------------~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
.++. +..+|...+.-.|-+++++-+..|.+.+||+-.++..
T Consensus 344 ~~~~~~~~~~~tp~~vi~-Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~ 398 (735)
T KOG0308|consen 344 DSNNHSCDLTNTPDSVIP-GGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKV 398 (735)
T ss_pred cCCCccccccCCCceecc-CchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeeh
Confidence 1111 1223445566678899999999999999998766544
No 76
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=1.8e-24 Score=239.50 Aligned_cols=285 Identities=19% Similarity=0.295 Sum_probs=243.7
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE--------eCCCCCeEEEEecCCCCcceEEEEecCCCcE
Q 048801 283 GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL--------RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354 (1715)
Q Consensus 283 gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L--------~gH~~~VtsLafSPdg~~~~~LaSgS~DGtV 354 (1715)
|....+-|..|||||++|++|+.||.|-||+..+|+....+ --+..+|.|+.|+.|.. .|++|+.||.|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE---MlAsGsqDGkI 287 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE---MLASGSQDGKI 287 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH---HhhccCcCCcE
Confidence 45667889999999999999999999999999999765443 34778999999999987 89999999999
Q ss_pred EEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCC
Q 048801 355 RIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDS 434 (1715)
Q Consensus 355 rIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~ 434 (1715)
++|.+.+|.++.++. ..|...|+|+.|+.|+..+++++.|.+++|.-+.++
T Consensus 288 KvWri~tG~ClRrFd------------------------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG----- 338 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFD------------------------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG----- 338 (508)
T ss_pred EEEEEecchHHHHhh------------------------hhhccCeeEEEEccCcchhhcccccceEEEeccccc-----
Confidence 999999999887763 246778999999999999999999999999999875
Q ss_pred CCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccc
Q 048801 435 EQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGR 514 (1715)
Q Consensus 435 ~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~ 514 (1715)
+++..+.+|...|+...|.++| ..+++++.||+|++|+..+..+...+.
T Consensus 339 ----K~LKEfrGHsSyvn~a~ft~dG--------------------------~~iisaSsDgtvkvW~~KtteC~~Tfk- 387 (508)
T KOG0275|consen 339 ----KCLKEFRGHSSYVNEATFTDDG--------------------------HHIISASSDGTVKVWHGKTTECLSTFK- 387 (508)
T ss_pred ----hhHHHhcCccccccceEEcCCC--------------------------CeEEEecCCccEEEecCcchhhhhhcc-
Confidence 4578899999999999999997 799999999999999998866543321
Q ss_pred ccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CCCEEEEEecCCeEEEEECCCCceEEEEec---CCCCe
Q 048801 515 WTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAVDGSLVHSLTG---HSASS 590 (1715)
Q Consensus 515 ~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~LaTgs~DGtI~IWDl~sg~~l~tL~g---H~~~V 590 (1715)
..+....|+.+..-| +-..++++...++|+|.++ .|+.++.+.. ..+..
T Consensus 388 --------------------------~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdF 440 (508)
T KOG0275|consen 388 --------------------------PLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDF 440 (508)
T ss_pred --------------------------CCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCce
Confidence 122345677776666 4457788888899999997 6888888853 24456
Q ss_pred EEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 591 YVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 591 ~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
.+.+.+| .+.++.+.+.|+.++.+.+.+|+.-+++..|...|..++-+|..+.||+-++||.+.+|.
T Consensus 441 i~~~lSp-kGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 441 INAILSP-KGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEEecC-CCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 6777899 778888999999999999999999999999999999999999999999999999999995
No 77
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=4.2e-24 Score=232.08 Aligned_cols=282 Identities=18% Similarity=0.291 Sum_probs=229.6
Q ss_pred EEEEECC--CCCEEEEE------eCCCeeEEEECCCCCceEEEe--CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEe
Q 048801 289 TDLAVSS--NNTLVASA------SNDFVIRVWRLPDGLPISVLR--GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358 (1715)
Q Consensus 289 tsLafSp--Dg~lLASG------S~DGtIrVWDl~tg~~l~~L~--gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWD 358 (1715)
.++.||| ++++.+++ ...|.+.|.++..+.-+..+. .-...+..++|++...+ .+++++.||+++|||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~--~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHEN--QVIAASGDGSLRLFD 89 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcc--eEEEEecCceEEEec
Confidence 5788998 44433322 235889999997555555443 24578999999998765 789999999999999
Q ss_pred cCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCC
Q 048801 359 ARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQP 437 (1715)
Q Consensus 359 l~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~ 437 (1715)
+... ..+......|..+|.++.|++ ++..+++++-|++|++|+...+
T Consensus 90 ~~~~------------------------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~-------- 137 (311)
T KOG0277|consen 90 LTMP------------------------SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP-------- 137 (311)
T ss_pred cCCC------------------------CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC--------
Confidence 5321 123444566788999999998 5567888899999999998754
Q ss_pred ceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccc
Q 048801 438 IHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTR 517 (1715)
Q Consensus 438 ~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~ 517 (1715)
..+.++.+|...|...+|+|.. ++.+++++.||++++||++..
T Consensus 138 -~Sv~Tf~gh~~~Iy~a~~sp~~-------------------------~nlfas~Sgd~~l~lwdvr~~----------- 180 (311)
T KOG0277|consen 138 -NSVQTFNGHNSCIYQAAFSPHI-------------------------PNLFASASGDGTLRLWDVRSP----------- 180 (311)
T ss_pred -cceEeecCCccEEEEEecCCCC-------------------------CCeEEEccCCceEEEEEecCC-----------
Confidence 3477899999999999999975 589999999999999998841
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CCCEEEEEecCCeEEEEECCCC-ceEEEEecCCCCeEEEEE
Q 048801 518 AYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAVDG-SLVHSLTGHSASSYVLDV 595 (1715)
Q Consensus 518 ~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~LaTgs~DGtI~IWDl~sg-~~l~tL~gH~~~V~sLaf 595 (1715)
+. ...+..|...|.|+.|+. +...|+||+.|+.|++||+++. .++..+.+|.-.|..|.|
T Consensus 181 -----------------gk-~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~ 242 (311)
T KOG0277|consen 181 -----------------GK-FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKF 242 (311)
T ss_pred -----------------Cc-eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEec
Confidence 22 223677888999999996 6678899999999999999874 568889999999999999
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCC-CceEEEEEcccceEEEEEEcC-CCCEEEEEeCCCeEEEEEC
Q 048801 596 HPFNPRIAMSAGYDGRTIVWDIWE-GTPIRIYEIGRFKLVDGKFSP-DGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 596 SP~dg~lLaSgs~DGtI~VWDl~t-gk~l~tl~~h~~~V~svafSP-DG~~LAsgs~DG~I~IWdl 659 (1715)
||....+|+++++|-+++|||... ..++.++..|..-|..+.||+ ++.++|+++.|+.++||+.
T Consensus 243 Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 243 SPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred CcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 998889999999999999999974 456677777777788899998 6789999999999999984
No 78
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=4.9e-24 Score=235.85 Aligned_cols=295 Identities=18% Similarity=0.260 Sum_probs=234.9
Q ss_pred EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC------------C------CceEEEeCCCCCeEEEEecCCC
Q 048801 278 LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD------------G------LPISVLRGHTGAVTAIAFSPRP 339 (1715)
Q Consensus 278 l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t------------g------~~l~~L~gH~~~VtsLafSPdg 339 (1715)
...+..|.+++.+.+|++||.++|+|+.|..|+|.|++. | -.+++|..|...|+++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 345678999999999999999999999999999999861 1 2367888999999999999998
Q ss_pred CcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC
Q 048801 340 SAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT 419 (1715)
Q Consensus 340 ~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG 419 (1715)
. .|++|+.|++|+++|+........+.. ......|.++.|+|.|.+|++|....
T Consensus 185 ~---ILiS~srD~tvKlFDfsK~saKrA~K~-----------------------~qd~~~vrsiSfHPsGefllvgTdHp 238 (430)
T KOG0640|consen 185 T---ILISGSRDNTVKLFDFSKTSAKRAFKV-----------------------FQDTEPVRSISFHPSGEFLLVGTDHP 238 (430)
T ss_pred h---eEEeccCCCeEEEEecccHHHHHHHHH-----------------------hhccceeeeEeecCCCceEEEecCCC
Confidence 7 899999999999999875432221111 11245699999999999999999999
Q ss_pred eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEE
Q 048801 420 FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAI 499 (1715)
Q Consensus 420 ~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIr 499 (1715)
++++||+.+.++.... ..-.+|.+.|+++.+++.+ .+.++++.||.|+
T Consensus 239 ~~rlYdv~T~Qcfvsa------nPd~qht~ai~~V~Ys~t~--------------------------~lYvTaSkDG~Ik 286 (430)
T KOG0640|consen 239 TLRLYDVNTYQCFVSA------NPDDQHTGAITQVRYSSTG--------------------------SLYVTASKDGAIK 286 (430)
T ss_pred ceeEEeccceeEeeec------CcccccccceeEEEecCCc--------------------------cEEEEeccCCcEE
Confidence 9999999986542222 2335799999999999987 7999999999999
Q ss_pred EEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCC-CCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCc
Q 048801 500 IWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPT-PRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS 578 (1715)
Q Consensus 500 IWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h-~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~ 578 (1715)
|||--+++++..++. .| ...|.+..|+.+|++|++.+.|..|++|.+.+|+
T Consensus 287 lwDGVS~rCv~t~~~----------------------------AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 287 LWDGVSNRCVRTIGN----------------------------AHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred eeccccHHHHHHHHh----------------------------hcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 999776655443321 23 3468999999999999999999999999999999
Q ss_pred eEEEEecCC--CC---eEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE-cccceEEEEEEcCCCCEEEEEeCCC
Q 048801 579 LVHSLTGHS--AS---SYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE-IGRFKLVDGKFSPDGTSIVLSDDVG 652 (1715)
Q Consensus 579 ~l~tL~gH~--~~---V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~-~h~~~V~svafSPDG~~LAsgs~DG 652 (1715)
++..+.|-. +. -+...|+.....+|.---..+.++-||.+++..+..+. +|.+.+..+.-||.+.-+.+|+.|-
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 999997642 11 12334555333334333446789999999987766554 5788899999999999999999999
Q ss_pred eEEEEE
Q 048801 653 QIYLLN 658 (1715)
Q Consensus 653 ~I~IWd 658 (1715)
.+++|-
T Consensus 419 raRFWy 424 (430)
T KOG0640|consen 419 RARFWY 424 (430)
T ss_pred eeeeee
Confidence 999995
No 79
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.9e-23 Score=242.79 Aligned_cols=298 Identities=20% Similarity=0.299 Sum_probs=240.9
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEE----EE-------------e-cCCCCCeEEEEECCCC
Q 048801 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCL----AS-------------C-RGHEGDITDLAVSSNN 297 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l----~t-------------L-~gHs~~VtsLafSpDg 297 (1715)
+..+..|.-+|+||+++||..++++++.||+|.=|++.+|+.. .. - ++|...|.++++|+||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 5667899999999999999999999999999999999888633 11 1 2788999999999999
Q ss_pred CEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCc
Q 048801 298 TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAI 377 (1715)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i 377 (1715)
+|||+|+.|..|.||+.++.+.+..+.+|.+.|.+++|-.... .|++++.|++|++|++.....+.++
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~---~lys~s~Drsvkvw~~~~~s~vetl--------- 282 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTS---ELYSASADRSVKVWSIDQLSYVETL--------- 282 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCcc---ceeeeecCCceEEEehhHhHHHHHH---------
Confidence 9999999999999999999999999999999999999987765 7999999999999999866544433
Q ss_pred cCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEc
Q 048801 378 TGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS 457 (1715)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafs 457 (1715)
.+|...|..|....-++.+-+|+.|.++++|++... ....+.+|.+.+.|++|-
T Consensus 283 ----------------yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee----------sqlifrg~~~sidcv~~I 336 (479)
T KOG0299|consen 283 ----------------YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE----------SQLIFRGGEGSIDCVAFI 336 (479)
T ss_pred ----------------hCCccceeeechhcccceEEeccccceeEEEecccc----------ceeeeeCCCCCeeeEEEe
Confidence 456778999998888898999999999999999532 234678899999999998
Q ss_pred cCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCC
Q 048801 458 GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP 537 (1715)
Q Consensus 458 pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 537 (1715)
.+ ..|++|+.+|.|.+|++...+.+......... .+
T Consensus 337 n~---------------------------~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv-----------------~~ 372 (479)
T KOG0299|consen 337 ND---------------------------EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV-----------------IP 372 (479)
T ss_pred cc---------------------------cceeeccCCceEEEeeecccCceeEeeccccc-----------------cC
Confidence 75 69999999999999999876544332111100 00
Q ss_pred cccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCC----ceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 048801 538 RQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG----SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTI 613 (1715)
Q Consensus 538 ~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg----~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~ 613 (1715)
......++..|++++..|...++++|+.+|.|++|-+.+| +++..+. -.+.|++|+|++++.++++..|....+-
T Consensus 373 ~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlG 451 (479)
T KOG0299|consen 373 ELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLG 451 (479)
T ss_pred CccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccc
Confidence 0011233468999999999999999999999999999887 3444554 6778999999995555776666665554
Q ss_pred EEE
Q 048801 614 VWD 616 (1715)
Q Consensus 614 VWD 616 (1715)
-|-
T Consensus 452 RW~ 454 (479)
T KOG0299|consen 452 RWW 454 (479)
T ss_pred eee
Confidence 453
No 80
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=1.6e-22 Score=253.86 Aligned_cols=266 Identities=20% Similarity=0.275 Sum_probs=202.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEE-------------EEecCCCCCeEEEEECC-CCCEEEEEeCCC
Q 048801 242 HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCL-------------ASCRGHEGDITDLAVSS-NNTLVASASNDF 307 (1715)
Q Consensus 242 H~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l-------------~tL~gHs~~VtsLafSp-Dg~lLASGS~DG 307 (1715)
|-..|....+++|+..+++++.+.....|+...+..+ ..+.+|.+.|++++|+| ++.+||+|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 3445566667777766777777777777775544322 24779999999999999 889999999999
Q ss_pred eeEEEECCCC-------CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCc
Q 048801 308 VIRVWRLPDG-------LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGK 380 (1715)
Q Consensus 308 tIrVWDl~tg-------~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~ 380 (1715)
+|+|||+.++ .++..+.+|...|.+++|+|++.. +|++++.|++|+|||+.+++.+..+
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~--iLaSgs~DgtVrIWDl~tg~~~~~l------------ 164 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN--VLASAGADMVVNVWDVERGKAVEVI------------ 164 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC--EEEEEeCCCEEEEEECCCCeEEEEE------------
Confidence 9999999765 357788999999999999998643 7999999999999999877643322
Q ss_pred cCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCC-eeEEEEccC
Q 048801 381 SNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEND-VNYVQFSGC 459 (1715)
Q Consensus 381 ~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~-V~sLafspd 459 (1715)
..|...|.+++|+|+|.+|++|+.|+.|+|||+++++ .+..+.+|.+. +..+.|.++
T Consensus 165 -------------~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~---------~v~tl~~H~~~~~~~~~w~~~ 222 (493)
T PTZ00421 165 -------------KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT---------IVSSVEAHASAKSQRCLWAKR 222 (493)
T ss_pred -------------cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc---------EEEEEecCCCCcceEEEEcCC
Confidence 2356679999999999999999999999999998753 35567778764 346677775
Q ss_pred cccccccccccccccccccccCCcccCceEEEEc----CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCC
Q 048801 460 AVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS----RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRG 535 (1715)
Q Consensus 460 g~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS----~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g 535 (1715)
+ ..|++++ .|+.|++||+++...
T Consensus 223 ~--------------------------~~ivt~G~s~s~Dr~VklWDlr~~~~--------------------------- 249 (493)
T PTZ00421 223 K--------------------------DLIITLGCSKSQQRQIMLWDTRKMAS--------------------------- 249 (493)
T ss_pred C--------------------------CeEEEEecCCCCCCeEEEEeCCCCCC---------------------------
Confidence 4 4555543 589999999975321
Q ss_pred CCcccc-cCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCceEEEEec-CCCCeEEEEEcc
Q 048801 536 GPRQRL-LPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGSLVHSLTG-HSASSYVLDVHP 597 (1715)
Q Consensus 536 ~~~~~l-~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~~l~tL~g-H~~~V~sLafSP 597 (1715)
+.... ......+....|++++.+|++|+ .|+.|++||+.+++++..+.. +..++.+++|.|
T Consensus 250 -p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 250 -PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred -ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 00001 11233466678999999999887 599999999999988776643 455678888887
No 81
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=7.7e-23 Score=246.27 Aligned_cols=375 Identities=18% Similarity=0.266 Sum_probs=280.8
Q ss_pred ccceeEEEEcCCCCCeEEEEEcCCCC---EEEEEeCCCcEEEEeCCCCc---------------------EE--------
Q 048801 231 QKMQNIKKLRGHRDAVYCAIFDRSGR---FVITGSDDRLVKIWSMETAF---------------------CL-------- 278 (1715)
Q Consensus 231 ~~~k~l~~L~GH~~~Vt~VafSpDG~---~LaTGS~DGtIrIWDl~tgk---------------------~l-------- 278 (1715)
.+++.+..|.||.+.|.+++|...+. +||++|.|..|+||.+.-+. .+
T Consensus 179 d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is 258 (764)
T KOG1063|consen 179 DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRIS 258 (764)
T ss_pred cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEe
Confidence 36788999999999999999987554 89999999999999763211 11
Q ss_pred --EEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC--CceEE-----EeCCCCCeEEEEecCCCCcceEEEEec
Q 048801 279 --ASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG--LPISV-----LRGHTGAVTAIAFSPRPSAIYQLLSSS 349 (1715)
Q Consensus 279 --~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg--~~l~~-----L~gH~~~VtsLafSPdg~~~~~LaSgS 349 (1715)
..+.||.+.|+++.|+|.+..|++++.|.++.||...+. --+.. ..|..+...+..|+|++. .+++-+
T Consensus 259 ~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~---~ii~~g 335 (764)
T KOG1063|consen 259 FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN---VIIAHG 335 (764)
T ss_pred hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC---EEEEec
Confidence 123499999999999999999999999999999986543 22222 224456788999999987 789999
Q ss_pred CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCC
Q 048801 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 350 ~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~ 429 (1715)
..|..++|...... .-.......+|...|+.++|.|.|.+|++.+.|-+-|+|-.-..
T Consensus 336 ~~Gg~hlWkt~d~~----------------------~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~ 393 (764)
T KOG1063|consen 336 RTGGFHLWKTKDKT----------------------FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGR 393 (764)
T ss_pred ccCcEEEEeccCcc----------------------ceeeccccccccccceeeeecCCCCEEEEeccccceeeeccccc
Confidence 99999999822211 11112234567888999999999999999999999999977522
Q ss_pred CccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCc--
Q 048801 430 SVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR-- 507 (1715)
Q Consensus 430 ~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~-- 507 (1715)
.+..+++....-|.-.++|++|-+.. ..|++|.....+++|+....-
T Consensus 394 -----q~~wHEiaRPQiHGyDl~c~~~vn~~--------------------------~~FVSgAdEKVlRvF~aPk~fv~ 442 (764)
T KOG1063|consen 394 -----QQEWHEIARPQIHGYDLTCLSFVNED--------------------------LQFVSGADEKVLRVFEAPKSFVK 442 (764)
T ss_pred -----ccceeeecccccccccceeeehccCC--------------------------ceeeecccceeeeeecCcHHHHH
Confidence 22367777778898999999998732 478888888888888654210
Q ss_pred --------------------cCccccccccccc---------------ccCCCCCC-CCCCCC---------CCCccccc
Q 048801 508 --------------------SHGKVGRWTRAYH---------------LKVPPPPL-PPQPPR---------GGPRQRLL 542 (1715)
Q Consensus 508 --------------------~~~~~~~~~~~~~---------------l~~~~~~~-~~~~~~---------g~~~~~l~ 542 (1715)
.+..++...+.+. ......+. ...++. -..+..+.
T Consensus 443 ~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLY 522 (764)
T KOG1063|consen 443 SLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLY 522 (764)
T ss_pred HHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhc
Confidence 0000011011000 00000000 000110 12345577
Q ss_pred CCCCCeeEEEeCCCCCEEEEEecCC-----eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 543 PTPRGVNMIVWSLDNRFVLAAIMDC-----RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 543 ~h~~~VtslafSPDG~~LaTgs~DG-----tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
+|...|.+++.+|+|++||+++... .|++|+..+...+..+.+|.-.|+.|+||| ++++|++.+.|.++.+|..
T Consensus 523 GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~ 601 (764)
T KOG1063|consen 523 GHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEV 601 (764)
T ss_pred cCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeee
Confidence 9999999999999999999988643 599999999999999999999999999999 8899999999999999987
Q ss_pred CCCc----eEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 618 WEGT----PIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 618 ~tgk----~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
.... .....+.|..-|+++.|+||+.++|+++.|..|.||....+
T Consensus 602 ~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 602 QEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred ecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 5432 23346678888999999999999999999999999998776
No 82
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=8.3e-24 Score=229.80 Aligned_cols=282 Identities=22% Similarity=0.345 Sum_probs=228.7
Q ss_pred EEEEEcC--CCCE-EEEE-----eCCCcEEEEeCCCCcEEEEec--CCCCCeEEEEECCC-CCEEEEEeCCCeeEEEECC
Q 048801 247 YCAIFDR--SGRF-VITG-----SDDRLVKIWSMETAFCLASCR--GHEGDITDLAVSSN-NTLVASASNDFVIRVWRLP 315 (1715)
Q Consensus 247 t~VafSp--DG~~-LaTG-----S~DGtIrIWDl~tgk~l~tL~--gHs~~VtsLafSpD-g~lLASGS~DGtIrVWDl~ 315 (1715)
+++.||| ++++ +||+ ...|.+.|-++..++-+..+. .-...+.+++|+++ ...+++++.||+++|||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 5778988 3333 2232 246899999997555444443 24678999999985 4688899999999999964
Q ss_pred C-CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 316 D-GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 316 t-g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
- ..++..++.|...|.++.|++..+. .+++++.|++|++|+...++.+.+ ..
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~--~~ltsSWD~TiKLW~~~r~~Sv~T-------------------------f~ 144 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRR--IFLTSSWDGTIKLWDPNRPNSVQT-------------------------FN 144 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccce--eEEeeccCCceEeecCCCCcceEe-------------------------ec
Confidence 3 3688899999999999999997764 678889999999999876654443 23
Q ss_pred CCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccc
Q 048801 395 LQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKE 473 (1715)
Q Consensus 395 ~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~ 473 (1715)
+|..-|...+|+| .+++|++++.||++++||++.. .+.+. +..|...|.|+.|+.-.
T Consensus 145 gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~--------gk~~~-i~ah~~Eil~cdw~ky~------------- 202 (311)
T KOG0277|consen 145 GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP--------GKFMS-IEAHNSEILCCDWSKYN------------- 202 (311)
T ss_pred CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC--------CceeE-EEeccceeEeecccccC-------------
Confidence 4677899999999 5689999999999999998753 33333 78899999999998643
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEe
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW 553 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtslaf 553 (1715)
+..++||+.|+.|++||++.-+ .++..+.+|...|+.+.|
T Consensus 203 ------------~~vl~Tg~vd~~vr~wDir~~r----------------------------~pl~eL~gh~~AVRkvk~ 242 (311)
T KOG0277|consen 203 ------------HNVLATGGVDNLVRGWDIRNLR----------------------------TPLFELNGHGLAVRKVKF 242 (311)
T ss_pred ------------CcEEEecCCCceEEEEehhhcc----------------------------ccceeecCCceEEEEEec
Confidence 6899999999999999998622 345677889999999999
Q ss_pred CCCC-CEEEEEecCCeEEEEECCCC-ceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 554 SLDN-RFVLAAIMDCRICVWNAVDG-SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 554 SPDG-~~LaTgs~DGtI~IWDl~sg-~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
||.. ..|++++.|-+++|||...+ .++.+..-|+.-|..+.|++.++.++|+++.|+.++||+.
T Consensus 243 Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 243 SPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred CcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9954 57899999999999999754 4566777899999999999999999999999999999984
No 83
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=2.4e-22 Score=245.98 Aligned_cols=419 Identities=18% Similarity=0.222 Sum_probs=315.5
Q ss_pred CeEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEE
Q 048801 245 AVYCAIFDRSG--RFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISV 322 (1715)
Q Consensus 245 ~Vt~VafSpDG--~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~ 322 (1715)
.|+++ ++|.. +-|+.|+.+|.++||++.+++.+.+++++...|+++.=+|-=..+|.|..+|+|.|+++..++.+..
T Consensus 161 ~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~s 239 (910)
T KOG1539|consen 161 FITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMS 239 (910)
T ss_pred ceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEE
Confidence 37776 56653 5688999999999999999999999999999999999999888999999999999999999999999
Q ss_pred EeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeE
Q 048801 323 LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILC 402 (1715)
Q Consensus 323 L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vts 402 (1715)
++...+.|++++|..||.. .|++|+..|.+.+||+...+....+. ..|.+.|..
T Consensus 240 Fk~d~g~VtslSFrtDG~p--~las~~~~G~m~~wDLe~kkl~~v~~------------------------nah~~sv~~ 293 (910)
T KOG1539|consen 240 FKQDWGRVTSLSFRTDGNP--LLASGRSNGDMAFWDLEKKKLINVTR------------------------NAHYGSVTG 293 (910)
T ss_pred EEccccceeEEEeccCCCe--eEEeccCCceEEEEEcCCCeeeeeee------------------------ccccCCccc
Confidence 9955699999999999984 78999999999999998766443321 234566888
Q ss_pred EEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCC
Q 048801 403 CAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNS 482 (1715)
Q Consensus 403 lafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s 482 (1715)
+.|.+....+++++.|..+++|-..++.. ..+.++.-.||..+..||.|....
T Consensus 294 ~~fl~~epVl~ta~~DnSlk~~vfD~~dg-----~pR~LR~R~GHs~Pp~~irfy~~~---------------------- 346 (910)
T KOG1539|consen 294 ATFLPGEPVLVTAGADNSLKVWVFDSGDG-----VPRLLRSRGGHSAPPSCIRFYGSQ---------------------- 346 (910)
T ss_pred ceecCCCceEeeccCCCceeEEEeeCCCC-----cchheeeccCCCCCchheeeeccC----------------------
Confidence 99999999999999999999997765422 134567778999999999998543
Q ss_pred cccCceEEEEcCCCeEEEEecCCCccCcccccc---cc--------cccccCCCCCCC-C--------------------
Q 048801 483 WFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRW---TR--------AYHLKVPPPPLP-P-------------------- 530 (1715)
Q Consensus 483 ~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~---~~--------~~~l~~~~~~~~-~-------------------- 530 (1715)
...+.+++.|++++.+++.........++. .. ...+.+++.... .
T Consensus 347 ---g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~ 423 (910)
T KOG1539|consen 347 ---GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRS 423 (910)
T ss_pred ---cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcce
Confidence 368888889998888876543221111110 00 000111110000 0
Q ss_pred ------CCC-CCCC---cccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEE---ecCCCCeEEEEEcc
Q 048801 531 ------QPP-RGGP---RQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSL---TGHSASSYVLDVHP 597 (1715)
Q Consensus 531 ------~~~-~g~~---~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL---~gH~~~V~sLafSP 597 (1715)
... .|.. ...+......+++++.++.|++.+.|...|.|-+|++.+|-....+ ..|.++|++++...
T Consensus 424 ~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~ 503 (910)
T KOG1539|consen 424 AYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG 503 (910)
T ss_pred EEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC
Confidence 000 0000 0011112356899999999999999999999999999999999998 58999999999976
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc------ccccc
Q 048801 598 FNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK------DAKYD 671 (1715)
Q Consensus 598 ~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k------~~~~~ 671 (1715)
-++++++++.+|.+++||.....++..+.. ...+..+..+-....+|++.+|-.|.++|+.+.+..+ ....+
T Consensus 504 -~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd 581 (910)
T KOG1539|consen 504 -TNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITD 581 (910)
T ss_pred -CCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceee
Confidence 567899999999999999999988888874 4467788888888899999999999999998876554 33456
Q ss_pred eeecCCCccEEEcCC-CC--eeecccccccCcCCCCCcccCCCCCCCCCccchhhhhhcccccceeecCCCCeEEee
Q 048801 672 QFFLGDYRPLIRDSL-GN--VLDQETQLVPHRRNIQDPLCDSSMIPYEEPYQSMYQQRRLGALGIEWRPSSIKLAIG 745 (1715)
Q Consensus 672 ~~fs~D~r~L~~d~~-g~--vld~~tq~~p~~~~~~~~lvD~~~~p~p~~~q~~~q~r~~g~~~l~~sPdg~~lAvg 745 (1715)
..|++||++|+.... +. ++|- |.+ .++|.-....| +..+.|+|.|..||+.
T Consensus 582 ~~FS~DgrWlisasmD~tIr~wDl-----pt~-----~lID~~~vd~~-------------~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 582 MTFSPDGRWLISASMDSTIRTWDL-----PTG-----TLIDGLLVDSP-------------CTSLSFSPNGDFLATV 635 (910)
T ss_pred eEeCCCCcEEEEeecCCcEEEEec-----cCc-----ceeeeEecCCc-------------ceeeEECCCCCEEEEE
Confidence 789999999997654 33 3331 111 12222221111 1257899999999997
No 84
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.3e-23 Score=223.88 Aligned_cols=252 Identities=20% Similarity=0.296 Sum_probs=219.2
Q ss_pred ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCc
Q 048801 319 PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH 398 (1715)
Q Consensus 319 ~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~ 398 (1715)
.+..+.+|.++|.++.|+-+|+ |.++++.|.+|++|+...+.++.++ .+|+.
T Consensus 9 r~~~l~~~qgaV~avryN~dGn---Y~ltcGsdrtvrLWNp~rg~liktY-------------------------sghG~ 60 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGN---YCLTCGSDRTVRLWNPLRGALIKTY-------------------------SGHGH 60 (307)
T ss_pred hceeecccccceEEEEEccCCC---EEEEcCCCceEEeecccccceeeee-------------------------cCCCc
Confidence 4567889999999999999998 8999999999999999888776654 35788
Q ss_pred ceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccccc
Q 048801 399 QILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPK 478 (1715)
Q Consensus 399 ~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~ 478 (1715)
+|..++.+.|...|++|+.|..|.+||+.+++ .++.+.+|.+.|+.+.|+.+.
T Consensus 61 EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk---------v~Rr~rgH~aqVNtV~fNees------------------ 113 (307)
T KOG0316|consen 61 EVLDAALSSDNSKFASCGGDKAVQVWDVNTGK---------VDRRFRGHLAQVNTVRFNEES------------------ 113 (307)
T ss_pred eeeeccccccccccccCCCCceEEEEEcccCe---------eeeecccccceeeEEEecCcc------------------
Confidence 99999999999999999999999999999875 478899999999999999875
Q ss_pred ccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC
Q 048801 479 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR 558 (1715)
Q Consensus 479 ~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~ 558 (1715)
..+++|+.|.++++||.++.. ..+++.+......|.++.+ .+.
T Consensus 114 --------SVv~SgsfD~s~r~wDCRS~s---------------------------~ePiQildea~D~V~Si~v--~~h 156 (307)
T KOG0316|consen 114 --------SVVASGSFDSSVRLWDCRSRS---------------------------FEPIQILDEAKDGVSSIDV--AEH 156 (307)
T ss_pred --------eEEEeccccceeEEEEcccCC---------------------------CCccchhhhhcCceeEEEe--ccc
Confidence 689999999999999998643 2345556666778888877 456
Q ss_pred EEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceE--EEE
Q 048801 559 FVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKL--VDG 636 (1715)
Q Consensus 559 ~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V--~sv 636 (1715)
.|++|+.||+++.||++.|++...+-+| +|+++.|++ ++..++.++.|++|++.|-.+|+.++.+.+|...- .++
T Consensus 157 eIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 157 EIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred EEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecC-CCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence 8999999999999999999887776655 799999999 77777788999999999999999999999987654 467
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 637 KFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 637 afSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
+++.....+++|++||.|++||+-.+..+
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDETQI 262 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccceee
Confidence 88888899999999999999999877654
No 85
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=3.1e-23 Score=230.32 Aligned_cols=273 Identities=19% Similarity=0.287 Sum_probs=204.2
Q ss_pred CCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCC-CcEE-EEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC
Q 048801 241 GHRDAVYCAIFDR-SGRFVITGSDDRLVKIWSMET-AFCL-ASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG 317 (1715)
Q Consensus 241 GH~~~Vt~VafSp-DG~~LaTGS~DGtIrIWDl~t-gk~l-~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg 317 (1715)
.-.+.|.+|+||| ...+|+.||+||+|++|+++. |..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3567899999999 566777999999999999976 3433 345679999999999999999999999999999999999
Q ss_pred CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCC
Q 048801 318 LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQS 397 (1715)
Q Consensus 318 ~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~ 397 (1715)
.+..+..|.++|.++.|-+..... +|++|+.|.+|++||.+....+.++.+|.
T Consensus 105 -Q~~~v~~Hd~pvkt~~wv~~~~~~-cl~TGSWDKTlKfWD~R~~~pv~t~~LPe------------------------- 157 (347)
T KOG0647|consen 105 -QVSQVAAHDAPVKTCHWVPGMNYQ-CLVTGSWDKTLKFWDTRSSNPVATLQLPE------------------------- 157 (347)
T ss_pred -CeeeeeecccceeEEEEecCCCcc-eeEecccccceeecccCCCCeeeeeeccc-------------------------
Confidence 456677799999999999876543 89999999999999999777666655532
Q ss_pred cceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccc
Q 048801 398 HQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVP 477 (1715)
Q Consensus 398 ~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~ 477 (1715)
.+.++.. -..+++++..+..|.+|++..+.. .+..+..+
T Consensus 158 -RvYa~Dv--~~pm~vVata~r~i~vynL~n~~t-----------e~k~~~Sp--------------------------- 196 (347)
T KOG0647|consen 158 -RVYAADV--LYPMAVVATAERHIAVYNLENPPT-----------EFKRIESP--------------------------- 196 (347)
T ss_pred -eeeehhc--cCceeEEEecCCcEEEEEcCCCcc-----------hhhhhcCc---------------------------
Confidence 2444433 234677777788888888865321 11111110
Q ss_pred cccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC
Q 048801 478 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN 557 (1715)
Q Consensus 478 ~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG 557 (1715)
..-.++||+.-.|.
T Consensus 197 ------------------------------------------------------------------Lk~Q~R~va~f~d~ 210 (347)
T KOG0647|consen 197 ------------------------------------------------------------------LKWQTRCVACFQDK 210 (347)
T ss_pred ------------------------------------------------------------------ccceeeEEEEEecC
Confidence 11134555555555
Q ss_pred CEEEEEecCCeEEEEECCCC--ceEEEEecCCC---------CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEE
Q 048801 558 RFVLAAIMDCRICVWNAVDG--SLVHSLTGHSA---------SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY 626 (1715)
Q Consensus 558 ~~LaTgs~DGtI~IWDl~sg--~~l~tL~gH~~---------~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl 626 (1715)
...+.|+.+|.+-|..+..+ +.-.+|+.|.. .|++|+|+| --..|+|+|.||++.+||-.....+.+.
T Consensus 211 ~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf~FWDkdar~kLk~s 289 (347)
T KOG0647|consen 211 DGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGTFSFWDKDARTKLKTS 289 (347)
T ss_pred CceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec-ccceEEEecCCceEEEecchhhhhhhcc
Confidence 55566666666666666554 33344555542 477899999 5567789999999999999888899998
Q ss_pred EcccceEEEEEEcCCCCEEEEE
Q 048801 627 EIGRFKLVDGKFSPDGTSIVLS 648 (1715)
Q Consensus 627 ~~h~~~V~svafSPDG~~LAsg 648 (1715)
..+..+|++++|+.+|.++|.+
T Consensus 290 ~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 290 ETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CcCCCccceeEecCCCCEEEEE
Confidence 8899999999999999999865
No 86
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.7e-23 Score=259.02 Aligned_cols=309 Identities=20% Similarity=0.294 Sum_probs=216.1
Q ss_pred cEEEEec-CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcE
Q 048801 276 FCLASCR-GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354 (1715)
Q Consensus 276 k~l~tL~-gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtV 354 (1715)
...+.+. .|.+.|+++.||+||+|||+|+.||.|+||.+...... ..+.+.-.++.+.-..... ...+.+..+.+
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~---~~~~~~~~~~~~~~~~~s~-~~p~~s~~~~~ 332 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERM---RVAEGDSSCMYFEYNANSQ-IEPSTSSEEKI 332 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchh---cccccccchhhhhhhhccc-cCccccccccc
Confidence 3344556 89999999999999999999999999999998654331 1122222222221111000 00000000000
Q ss_pred E--EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCcc
Q 048801 355 R--IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVE 432 (1715)
Q Consensus 355 r--IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~ 432 (1715)
. .-..+++.......++ .........+.....+|...|..+.|+.++ +|++++.|.+|++|++...
T Consensus 333 ~~~~s~~~~~~~s~~~~~p--------~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~--- 400 (712)
T KOG0283|consen 333 SSRTSSSRKGSQSPCVLLP--------LKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRK--- 400 (712)
T ss_pred cccccccccccCCccccCC--------CccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCc---
Confidence 0 0001111111110010 011122445566778899999999999775 8899999999999999764
Q ss_pred CCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccc
Q 048801 433 DSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKV 512 (1715)
Q Consensus 433 ~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~ 512 (1715)
.++.++ .|.+.|+||+|+|.. .++|++|+-||.|+||++...+.
T Consensus 401 ------~CL~~F-~HndfVTcVaFnPvD-------------------------DryFiSGSLD~KvRiWsI~d~~V---- 444 (712)
T KOG0283|consen 401 ------ECLKVF-SHNDFVTCVAFNPVD-------------------------DRYFISGSLDGKVRLWSISDKKV---- 444 (712)
T ss_pred ------ceeeEE-ecCCeeEEEEecccC-------------------------CCcEeecccccceEEeecCcCee----
Confidence 345544 599999999999965 68999999999999999976432
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe--cC----
Q 048801 513 GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT--GH---- 586 (1715)
Q Consensus 513 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~--gH---- 586 (1715)
..|. .-..-|++++|+|||++.++|+.+|.+++|++...++..... -|
T Consensus 445 v~W~--------------------------Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 445 VDWN--------------------------DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred Eeeh--------------------------hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 1222 123569999999999999999999999999998887766542 11
Q ss_pred --CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccce--EEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 587 --SASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFK--LVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 587 --~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~--V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
...|+++.|.|.+..-|+..+.|..|+|+|..+-.++..|++.... -....|+.||++|+++++|..|+||+...-
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 2279999999966665666788999999999999999999875432 346799999999999999999999998543
No 87
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.8e-23 Score=249.67 Aligned_cols=276 Identities=18% Similarity=0.318 Sum_probs=235.2
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeC-CC
Q 048801 249 AIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRG-HT 327 (1715)
Q Consensus 249 VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~g-H~ 327 (1715)
+.|+ ..+.||+|.. ..|.+|+..++.....+..+...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |.
T Consensus 183 ldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~ 260 (484)
T KOG0305|consen 183 LDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA 260 (484)
T ss_pred hhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC
Confidence 3466 4557777753 5899999999987777776789999999999999999999999999999999999999998 99
Q ss_pred CCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc
Q 048801 328 GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA 407 (1715)
Q Consensus 328 ~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp 407 (1715)
..|-+++|... .+.+|+.|+.|.++|++..+.... ....|...|..+.|++
T Consensus 261 ~rvg~laW~~~-----~lssGsr~~~I~~~dvR~~~~~~~------------------------~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 261 SRVGSLAWNSS-----VLSSGSRDGKILNHDVRISQHVVS------------------------TLQGHRQEVCGLKWSP 311 (484)
T ss_pred ceeEEEeccCc-----eEEEecCCCcEEEEEEecchhhhh------------------------hhhcccceeeeeEECC
Confidence 99999999943 789999999999999987653221 1456788999999999
Q ss_pred CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCc
Q 048801 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHD 487 (1715)
Q Consensus 408 dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~ 487 (1715)
|+.+||+|+.|+.+.|||... ..++..+..|.+.|.+++|+|-. ..
T Consensus 312 d~~~lASGgnDN~~~Iwd~~~---------~~p~~~~~~H~aAVKA~awcP~q-------------------------~~ 357 (484)
T KOG0305|consen 312 DGNQLASGGNDNVVFIWDGLS---------PEPKFTFTEHTAAVKALAWCPWQ-------------------------SG 357 (484)
T ss_pred CCCeeccCCCccceEeccCCC---------ccccEEEeccceeeeEeeeCCCc-------------------------cC
Confidence 999999999999999999954 23467788999999999999964 46
Q ss_pred eEEEEc--CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEE--E
Q 048801 488 NIVTCS--RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLA--A 563 (1715)
Q Consensus 488 ~LaSgS--~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaT--g 563 (1715)
.||+|+ .|+.|++||+.++..+. .......|..|.|++..+-|++ |
T Consensus 358 lLAsGGGs~D~~i~fwn~~~g~~i~------------------------------~vdtgsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 358 LLATGGGSADRCIKFWNTNTGARID------------------------------SVDTGSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred ceEEcCCCcccEEEEEEcCCCcEec------------------------------ccccCCceeeEEEcCCCCEEEEecC
Confidence 888865 79999999998755322 2234567999999999977776 4
Q ss_pred ecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC
Q 048801 564 IMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG 620 (1715)
Q Consensus 564 s~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg 620 (1715)
..++.|.||+..+.+.+..+.+|...|..++++| ++..+++|+.|.++++|++...
T Consensus 408 ~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 408 YSENQITLWKYPSMKLVAELLGHTSRVLYLALSP-DGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCcEEEEeccccceeeeecCCcceeEEEEECC-CCCEEEEecccCcEEeccccCC
Confidence 4567899999999999999999999999999999 7888999999999999999764
No 88
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=6e-23 Score=247.46 Aligned_cols=282 Identities=23% Similarity=0.366 Sum_probs=240.3
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEE--EEecCCCCCeEE-EEECC-CCCEEEEEeCCC
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCL--ASCRGHEGDITD-LAVSS-NNTLVASASNDF 307 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l--~tL~gHs~~Vts-LafSp-Dg~lLASGS~DG 307 (1715)
..+..+.+.||...|..|++.+.. .++++|.||++++|+-.....+ ..+.+|.+-|.+ +++.+ ++-.|++|+.|+
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 356778899999999999887554 8999999999999997655444 457788888887 88875 555699999999
Q ss_pred eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 308 VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
+|.+|.+.+..++.+|.+|...|.|+....++ .|++||+|.++++|.+....
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~----~~iSgSWD~TakvW~~~~l~------------------------ 133 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG----TLISGSWDSTAKVWRIGELV------------------------ 133 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCcC----ceEecccccceEEecchhhh------------------------
Confidence 99999999999999999999999999988776 58999999999999764221
Q ss_pred CCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccc
Q 048801 388 GPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAM 467 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~ 467 (1715)
....+|...|+++++-|++ .++||+.|.+|++|.-. ..+.++.+|++.|+.+++.+++
T Consensus 134 ---~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~-----------~~l~tf~gHtD~VRgL~vl~~~------- 191 (745)
T KOG0301|consen 134 ---YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG-----------TLLKTFSGHTDCVRGLAVLDDS------- 191 (745)
T ss_pred ---cccCCcchheeeeeecCCC-cEEeccCcceeeeccCC-----------chhhhhccchhheeeeEEecCC-------
Confidence 1245678889999999988 89999999999999873 3578999999999999999863
Q ss_pred cccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCC
Q 048801 468 SDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG 547 (1715)
Q Consensus 468 ~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~ 547 (1715)
.|++|+.||.|++|++. +..+.+..+|..-
T Consensus 192 --------------------~flScsNDg~Ir~w~~~------------------------------ge~l~~~~ghtn~ 221 (745)
T KOG0301|consen 192 --------------------HFLSCSNDGSIRLWDLD------------------------------GEVLLEMHGHTNF 221 (745)
T ss_pred --------------------CeEeecCCceEEEEecc------------------------------CceeeeeeccceE
Confidence 89999999999999985 3456678889999
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 548 VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
|.++...+++..|++++.|++++||+.. .+.+.+.-..-.|+++.+-+ ++.+ ++|+.||.|+||...
T Consensus 222 vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~-NgDI-vvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 222 VYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL-NGDI-VVGGSDGRVRVFTVD 288 (745)
T ss_pred EEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee-CCCE-EEeccCceEEEEEec
Confidence 9999988999999999999999999975 78888876666899998877 5555 478899999999875
No 89
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.91 E-value=2.1e-23 Score=230.95 Aligned_cols=296 Identities=22% Similarity=0.359 Sum_probs=230.6
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC------------------cEEEEecCCCCCeEEEEECCCC
Q 048801 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA------------------FCLASCRGHEGDITDLAVSSNN 297 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg------------------k~l~tL~gHs~~VtsLafSpDg 297 (1715)
...+..|.+++.+.+|++||.++||||.|..|+|.|++.. ..+++|..|..+|+++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 4567889999999999999999999999999999998611 3578889999999999999999
Q ss_pred CEEEEEeCCCeeEEEECCCCCce---EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCC
Q 048801 298 TLVASASNDFVIRVWRLPDGLPI---SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPP 374 (1715)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tg~~l---~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~ 374 (1715)
.+|++|+.|++|+++|+...... +.+. ...+|.+|.|+|.|. +|+.|..-.++++||+++-++...-
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGe---fllvgTdHp~~rlYdv~T~Qcfvsa------ 254 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGE---FLLVGTDHPTLRLYDVNTYQCFVSA------ 254 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCc---eEEEecCCCceeEEeccceeEeeec------
Confidence 99999999999999998654222 2232 557899999999998 8999999999999999987653211
Q ss_pred CCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee-cCCCC-Cee
Q 048801 375 DAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL-SGHEN-DVN 452 (1715)
Q Consensus 375 ~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l-~gH~~-~V~ 452 (1715)
.....|...|+++.+++.|++.++|+.||.|+|||--.+++ +.++ ..|.+ .|.
T Consensus 255 ----------------nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC---------v~t~~~AH~gsevc 309 (430)
T KOG0640|consen 255 ----------------NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC---------VRTIGNAHGGSEVC 309 (430)
T ss_pred ----------------CcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHH---------HHHHHhhcCCceee
Confidence 12345678899999999999999999999999999876543 3333 34544 788
Q ss_pred EEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCC
Q 048801 453 YVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQP 532 (1715)
Q Consensus 453 sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~ 532 (1715)
+..|..++ ++|++.+.|..+++|.+.+++.+.......
T Consensus 310 Sa~Ftkn~--------------------------kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg---------------- 347 (430)
T KOG0640|consen 310 SAVFTKNG--------------------------KYILSSGKDSTVKLWEISTGRMLKEYTGAG---------------- 347 (430)
T ss_pred eEEEccCC--------------------------eEEeecCCcceeeeeeecCCceEEEEecCC----------------
Confidence 89999886 899999999999999999877543321100
Q ss_pred CCCCCcccccCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCceEEEE-ecCCCCeEEEEEccCCCcEEEEEeCCC
Q 048801 533 PRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGSLVHSL-TGHSASSYVLDVHPFNPRIAMSAGYDG 610 (1715)
Q Consensus 533 ~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~~l~tL-~gH~~~V~sLafSP~dg~lLaSgs~DG 610 (1715)
..+ ...--+...|+....+++.-. ..+.++-||.+++..+..+ .+|.+.+..+.-|| .+-.+++|+.|-
T Consensus 348 ~tg--------rq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP-~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 348 TTG--------RQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSP-VEPAFMTCSDDF 418 (430)
T ss_pred ccc--------chhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCC-CCCceeeecccc
Confidence 000 000112335565566665543 2467899999998776665 48999999999999 556677999999
Q ss_pred cEEEEEC
Q 048801 611 RTIVWDI 617 (1715)
Q Consensus 611 tI~VWDl 617 (1715)
.+++|--
T Consensus 419 raRFWyr 425 (430)
T KOG0640|consen 419 RARFWYR 425 (430)
T ss_pred eeeeeee
Confidence 9999964
No 90
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=8.8e-23 Score=234.98 Aligned_cols=284 Identities=21% Similarity=0.326 Sum_probs=243.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL 323 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L 323 (1715)
-.|+++...+....++||+.|..+.++|....+.+.+|+||...|+.+.|+++...+++++.|..|+||.+........+
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 46888888888789999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEE
Q 048801 324 RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCC 403 (1715)
Q Consensus 324 ~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsl 403 (1715)
..|..+|+.+..+|.+. ||++++.||+..+.|++++..+...... ...-.++++
T Consensus 300 ~~h~~~V~~ls~h~tge---YllsAs~d~~w~Fsd~~~g~~lt~vs~~-----------------------~s~v~~ts~ 353 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGE---YLLSASNDGTWAFSDISSGSQLTVVSDE-----------------------TSDVEYTSA 353 (506)
T ss_pred ccccccceeeeeccCCc---EEEEecCCceEEEEEccCCcEEEEEeec-----------------------cccceeEEe
Confidence 99999999999999998 9999999999999999999876554321 113458999
Q ss_pred EEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCc
Q 048801 404 AYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSW 483 (1715)
Q Consensus 404 afSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~ 483 (1715)
+|+|||.+|++|..||.|+|||+.... .+..+.+|+++|..|+|+.+|
T Consensus 354 ~fHpDgLifgtgt~d~~vkiwdlks~~---------~~a~Fpght~~vk~i~FsENG----------------------- 401 (506)
T KOG0289|consen 354 AFHPDGLIFGTGTPDGVVKIWDLKSQT---------NVAKFPGHTGPVKAISFSENG----------------------- 401 (506)
T ss_pred eEcCCceEEeccCCCceEEEEEcCCcc---------ccccCCCCCCceeEEEeccCc-----------------------
Confidence 999999999999999999999998642 467889999999999999988
Q ss_pred ccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEE
Q 048801 484 FCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAA 563 (1715)
Q Consensus 484 ~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTg 563 (1715)
-+|++++.|+.|++||++..+....+ ......+|.++.|.+.|.+|+++
T Consensus 402 ---Y~Lat~add~~V~lwDLRKl~n~kt~----------------------------~l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 402 ---YWLATAADDGSVKLWDLRKLKNFKTI----------------------------QLDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred ---eEEEEEecCCeEEEEEehhhccccee----------------------------eccccccceeEEEcCCCCeEEee
Confidence 58999999999999999853311110 11123368999999999999999
Q ss_pred ecCCeEEEEEC--CCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 564 IMDCRICVWNA--VDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 564 s~DGtI~IWDl--~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
+.|=.|++++- .+..++..+..|.+..+++.|.. ...+++++|.|..++|+.+
T Consensus 451 g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~-~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 451 GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGE-HAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cceeEEEEEecccccceeeehhhhcccccceeeecc-cceEEeeccchhheEEeec
Confidence 88777777763 35678888889999999999977 6689999999999888764
No 91
>cd06071 Beach BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes. This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins.
Probab=99.91 E-value=2.8e-25 Score=255.24 Aligned_cols=130 Identities=15% Similarity=0.171 Sum_probs=118.3
Q ss_pred ccCcccCCchhhHHHHhhhhhhhhhcccccccccchhHHHHHHHHhhccCchh---------------------hHHHHH
Q 048801 14 SLGKAPLKFSSTVQEMAQLEQQDMVANQVVEADVDLREVYFLIIHFLSSGPCQ---------------------RTLGLL 72 (1715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~i~ElyfLi~~fL~~gp~~---------------------~~~~~L 72 (1715)
.|+..-==|.|+..+|..|.. +++|++|+|||||++|+.|+|.+++. ..|+.+
T Consensus 121 ~fd~~~RlF~si~~~~~~~~~------~~~d~~ELIPEFf~~Pe~f~N~n~~~lg~~~g~~~~DV~LP~Wa~s~~~FV~~ 194 (275)
T cd06071 121 HFDAADRLFNSIPSSWRSASE------NPSDVKELIPEFYYLPEFFLNINKFDFGKQDGEKVNDVELPPWAKSPEEFIRK 194 (275)
T ss_pred CcCCcccchhhHHHHHHHHHc------cCCCcccCCchHhcCHHHHhCCCcccccccCCCcccceecCCCcCCHHHHHHH
Confidence 344434458999999999997 68899999999999999999887651 799999
Q ss_pred HHHHHhcCCCccccccc----cccCCCCCCCCCCCCCccccCcccccccCCCCChHHHHHHHHHHHhcCCCCCCCccCCC
Q 048801 73 WNELLEHQLLPRRYHAW----FSRSGVNSGNDNDDGISFPLSYNKLVERYPHIEWDHLVKLLRQLLLYKASPFHGRIGGI 148 (1715)
Q Consensus 73 ~ReALESeyVS~~LH~W----FGyKQrG~eAv~A~NVFh~LTYEG~Vdld~i~dp~~r~aie~QI~nFGQTP~QL~~~pH 148 (1715)
||+||||+|||++||+| |||||+|++|++|.|||||++|++.++.+... .++.+++.++.+|||+|.|||.+||
T Consensus 195 ~R~aLES~~VS~~L~~WIDLIFG~kq~G~~A~~a~Nvf~p~~Y~~~~~~~~~~--~~~~~~~~~~~~~Gq~P~QLF~~pH 272 (275)
T cd06071 195 HREALESEYVSKNLHHWIDLIFGYKQRGEEAVKAKNVFHPLTYEGSVDLDSID--VEREAIEAQINNFGQTPVQLFTKPH 272 (275)
T ss_pred HHHHHcccHhhhhhhhhhhhhcccccCCHHHHHhcCCCcccccCCccccchhh--HHHHHHHHHHHhcCCCcchhccCCC
Confidence 99999999999999999 99999999999999999999999999887765 7899999999999999999999999
Q ss_pred CCC
Q 048801 149 APN 151 (1715)
Q Consensus 149 PPr 151 (1715)
|+|
T Consensus 273 P~R 275 (275)
T cd06071 273 PKR 275 (275)
T ss_pred CCC
Confidence 985
No 92
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.1e-22 Score=226.98 Aligned_cols=249 Identities=20% Similarity=0.286 Sum_probs=203.3
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCC--EEEEEeCCCee
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT--LVASASNDFVI 309 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~--lLASGS~DGtI 309 (1715)
++.++..+..|.++|+|||.+ |.|+|+||.|-+|+|||+.+...+..+-.|.+.|+++.|.++-. .|++|+.||.|
T Consensus 32 ~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 32 TLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred eeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence 345677789999999999996 89999999999999999999999999999999999999998765 89999999999
Q ss_pred EEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCC
Q 048801 310 RVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGP 389 (1715)
Q Consensus 310 rVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~ 389 (1715)
.+|++....++..+++|.+.|+.|+++|.++ +.++.+.|+.+++||+-.|+......+.
T Consensus 110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K---LALsVg~D~~lr~WNLV~Gr~a~v~~L~------------------ 168 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKAHKGQVTDLSIHPSGK---LALSVGGDQVLRTWNLVRGRVAFVLNLK------------------ 168 (362)
T ss_pred EEEEcCCeEEeeeecccccccceeEecCCCc---eEEEEcCCceeeeehhhcCccceeeccC------------------
Confidence 9999999999999999999999999999998 7889999999999999888754443321
Q ss_pred CCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccc
Q 048801 390 SSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSD 469 (1715)
Q Consensus 390 ~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~ 469 (1715)
...+.+.|+|.|.+|+.++.+ .|-||.+.+..+ +..+.
T Consensus 169 --------~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v---------~~~i~------------------------ 206 (362)
T KOG0294|consen 169 --------NKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASV---------FREIE------------------------ 206 (362)
T ss_pred --------CcceeeEEcCCCCEEEEEecc-EEEEEecccHhH---------hhhhh------------------------
Confidence 123448899999988888764 477787754221 00000
Q ss_pred cccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCee
Q 048801 470 AFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVN 549 (1715)
Q Consensus 470 ~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vt 549 (1715)
.+..+.
T Consensus 207 --------------------------------------------------------------------------~~~r~l 212 (362)
T KOG0294|consen 207 --------------------------------------------------------------------------NPKRIL 212 (362)
T ss_pred --------------------------------------------------------------------------ccccce
Confidence 001122
Q ss_pred EEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEc-cCCCcEEEEEeCCCcEEEEECCCC
Q 048801 550 MIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVH-PFNPRIAMSAGYDGRTIVWDIWEG 620 (1715)
Q Consensus 550 slafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafS-P~dg~lLaSgs~DGtI~VWDl~tg 620 (1715)
|+.|- ++..|++|+.|+.|.+||..++.++..+.+|...|.++.+- ...+.+|+|++.||.|+|||+...
T Consensus 213 ~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 213 CATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 33332 56688889999999999999999999999999999999842 225689999999999999999765
No 93
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=6.3e-24 Score=239.86 Aligned_cols=287 Identities=21% Similarity=0.315 Sum_probs=233.6
Q ss_pred EEEEecCCCCCeEEEEECCCC-CEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEE
Q 048801 277 CLASCRGHEGDITDLAVSSNN-TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355 (1715)
Q Consensus 277 ~l~tL~gHs~~VtsLafSpDg-~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVr 355 (1715)
.+..|.||...|.|++=+|.. ..+|+|+.||.|+|||+.+..++.++..|.+.|..|++... .+++++.|.+|+
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~-----~~~tvgdDKtvK 132 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQT-----SFFTVGDDKTVK 132 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEeccc-----ceEEecCCccee
Confidence 455678999999999999987 78999999999999999999999999999999999999882 589999999999
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCC
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSE 435 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~ 435 (1715)
.|-+... ...++ .....+..+.-+..+..++|++. .|.|||....
T Consensus 133 ~wk~~~~-p~~ti--------------------------lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~------ 177 (433)
T KOG0268|consen 133 QWKIDGP-PLHTI--------------------------LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD------ 177 (433)
T ss_pred eeeccCC-cceee--------------------------eccccccccccccccccccccCc--eeeecccccC------
Confidence 9987642 11111 11334566766777788998875 6899998642
Q ss_pred CCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccc
Q 048801 436 QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRW 515 (1715)
Q Consensus 436 ~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~ 515 (1715)
.++..+.-..+.|.++.|+|.. ...|++|+.|+.|.+||+++...+.++.
T Consensus 178 ---~Pv~smswG~Dti~svkfNpvE-------------------------TsILas~~sDrsIvLyD~R~~~Pl~KVi-- 227 (433)
T KOG0268|consen 178 ---NPVSSMSWGADSISSVKFNPVE-------------------------TSILASCASDRSIVLYDLRQASPLKKVI-- 227 (433)
T ss_pred ---CccceeecCCCceeEEecCCCc-------------------------chheeeeccCCceEEEecccCCccceee--
Confidence 3466677777889999999865 3689999999999999999765443321
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCC-ceEEEEecCCCCeEEEE
Q 048801 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG-SLVHSLTGHSASSYVLD 594 (1715)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg-~~l~tL~gH~~~V~sLa 594 (1715)
....-+.|+|+|.+-.+++|..|..++.||++.. +++..+.+|.+.|.+++
T Consensus 228 ----------------------------~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVd 279 (433)
T KOG0268|consen 228 ----------------------------LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVD 279 (433)
T ss_pred ----------------------------eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEec
Confidence 1123467899998888889999999999999874 56788899999999999
Q ss_pred EccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcc-cceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 595 VHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIG-RFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 595 fSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h-~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
||| -|.-+++|++|.+|+||.+..+.....+... -..|.++.||-|.+++++|++|+.|++|.....
T Consensus 280 fsp-tG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 280 FSP-TGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred cCC-CcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 999 6677889999999999999887665555322 246999999999999999999999999986543
No 94
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.4e-22 Score=237.35 Aligned_cols=282 Identities=16% Similarity=0.248 Sum_probs=232.9
Q ss_pred CCCeEEEEECCCCC--EEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCC
Q 048801 285 EGDITDLAVSSNNT--LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYS 362 (1715)
Q Consensus 285 s~~VtsLafSpDg~--lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg 362 (1715)
.+.|++++|+|... +.+++ .-.+.||+..+.....++......|.++.|..||. +|++|...|.|+|+|+.+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~--S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~---LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS--SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGR---LLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred cCcceeEecCCCCCCceEEec--ccEEEEEecchhhhhhhHHhhccceeEEEeecCCe---EEEccCCcCcEEEeccccH
Confidence 46899999999553 33333 34799999988888887877889999999999998 8999999999999996653
Q ss_pred CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceee
Q 048801 363 QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHEL 441 (1715)
Q Consensus 363 ~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l 441 (1715)
..+..+ ..|..+|..+.|+|.+ ..|++|+.|+.+++||+.+.. ..
T Consensus 101 ~iLR~~-------------------------~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~---------v~ 146 (487)
T KOG0310|consen 101 VILRQL-------------------------YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY---------VQ 146 (487)
T ss_pred HHHHHH-------------------------hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE---------EE
Confidence 332222 3467789999999955 678889999999999998742 35
Q ss_pred eeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccc
Q 048801 442 DVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHL 521 (1715)
Q Consensus 442 ~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l 521 (1715)
..+.+|++.|.|.+|+|.. +..++||+.||.|++||+++..
T Consensus 147 ~~l~~htDYVR~g~~~~~~-------------------------~hivvtGsYDg~vrl~DtR~~~-------------- 187 (487)
T KOG0310|consen 147 AELSGHTDYVRCGDISPAN-------------------------DHIVVTGSYDGKVRLWDTRSLT-------------- 187 (487)
T ss_pred EEecCCcceeEeeccccCC-------------------------CeEEEecCCCceEEEEEeccCC--------------
Confidence 6789999999999999965 4689999999999999998621
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCce-EEEEecCCCCeEEEEEccCCC
Q 048801 522 KVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL-VHSLTGHSASSYVLDVHPFNP 600 (1715)
Q Consensus 522 ~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~-l~tL~gH~~~V~sLafSP~dg 600 (1715)
.......|..+|..+.+-|.|..||+++. ..|+|||+.+|.. +..+..|...|+|+.+.. ++
T Consensus 188 ---------------~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~ 250 (487)
T KOG0310|consen 188 ---------------SRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DS 250 (487)
T ss_pred ---------------ceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeec-CC
Confidence 22234567889999999999999998874 5899999996654 444555999999999988 66
Q ss_pred cEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 601 RIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 601 ~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
..|++|+-||.|+|||+.+.+.+..+. -.++|.+++.+||++.+++|..+|.+.+-+...+
T Consensus 251 ~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 251 TRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred ceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 888899999999999999999999987 6789999999999999999999999888755443
No 95
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.7e-21 Score=218.92 Aligned_cols=291 Identities=16% Similarity=0.228 Sum_probs=235.6
Q ss_pred cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecC--CCc
Q 048801 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD--DGT 353 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~--DGt 353 (1715)
+..+.+..-.+.|++|.|+++|.+|++++.|.+++|||..+|+.+.++..+...|..++|..... .++.++. |.+
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~---~~i~sStk~d~t 81 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSN---TVIHSSTKEDDT 81 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCc---eEEEccCCCCCc
Confidence 44455666678999999999999999999999999999999999999999989999999988776 5555555 899
Q ss_pred EEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccC
Q 048801 354 CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVED 433 (1715)
Q Consensus 354 VrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~ 433 (1715)
|+..++.+.+.++.+ .+|...|.+++.+|-+..+++++.|++|++||++..++
T Consensus 82 IryLsl~dNkylRYF-------------------------~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c-- 134 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYF-------------------------PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC-- 134 (311)
T ss_pred eEEEEeecCceEEEc-------------------------CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC--
Confidence 999999888766543 46788899999999999999999999999999986543
Q ss_pred CCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccc
Q 048801 434 SEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVG 513 (1715)
Q Consensus 434 ~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~ 513 (1715)
...+... .-..++|.|.| -.+|++...+.|++||++.-.
T Consensus 135 -------qg~l~~~--~~pi~AfDp~G--------------------------LifA~~~~~~~IkLyD~Rs~d------ 173 (311)
T KOG1446|consen 135 -------QGLLNLS--GRPIAAFDPEG--------------------------LIFALANGSELIKLYDLRSFD------ 173 (311)
T ss_pred -------ceEEecC--CCcceeECCCC--------------------------cEEEEecCCCeEEEEEecccC------
Confidence 2222222 22357899987 477777777799999998521
Q ss_pred cccccccccCCCCCCCCCCCCCCCccccc---CCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCe
Q 048801 514 RWTRAYHLKVPPPPLPPQPPRGGPRQRLL---PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASS 590 (1715)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~~g~~~~~l~---~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V 590 (1715)
.++...+. +.....+.|.|||||++|+.++..+.+++.|.-+|..+.++.++...-
T Consensus 174 ---------------------kgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~ 232 (311)
T KOG1446|consen 174 ---------------------KGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAG 232 (311)
T ss_pred ---------------------CCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCC
Confidence 11111111 335568899999999999999999999999999999999998875543
Q ss_pred ---EEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEc-ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 591 ---YVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEI-GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 591 ---~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~-h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
....|+| ++.++++|+.||+|.+|++.+|..+..+.+ +.+++.++.|.|.-..+|+++. .+.+|=...
T Consensus 233 ~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw~p~~ 304 (311)
T KOG1446|consen 233 NLPLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--NLVFWLPDE 304 (311)
T ss_pred CcceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc--eEEEEeccc
Confidence 5678999 888999999999999999999999999998 5778999999998877777665 677775543
No 96
>PTZ00420 coronin; Provisional
Probab=99.91 E-value=7e-22 Score=249.22 Aligned_cols=251 Identities=18% Similarity=0.242 Sum_probs=188.5
Q ss_pred EeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCC-CCEEEEEeCCCeeEEEECCCCC--------ceEEEeCCCCCeE
Q 048801 261 GSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN-NTLVASASNDFVIRVWRLPDGL--------PISVLRGHTGAVT 331 (1715)
Q Consensus 261 GS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpD-g~lLASGS~DGtIrVWDl~tg~--------~l~~L~gH~~~Vt 331 (1715)
|+.++.|++|++.....+..+.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667899999999888889999999999999999996 7899999999999999997642 3457889999999
Q ss_pred EEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCe
Q 048801 332 AIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTV 411 (1715)
Q Consensus 332 sLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~ 411 (1715)
+++|+|++.. .|++++.|++|+|||+.+++....+. +...|.+++|+++|.+
T Consensus 130 sVaf~P~g~~--iLaSgS~DgtIrIWDl~tg~~~~~i~--------------------------~~~~V~SlswspdG~l 181 (568)
T PTZ00420 130 IIDWNPMNYY--IMCSSGFDSFVNIWDIENEKRAFQIN--------------------------MPKKLSSLKWNIKGNL 181 (568)
T ss_pred EEEECCCCCe--EEEEEeCCCeEEEEECCCCcEEEEEe--------------------------cCCcEEEEEECCCCCE
Confidence 9999998762 56799999999999998876433221 1345899999999999
Q ss_pred EEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEE
Q 048801 412 FVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVT 491 (1715)
Q Consensus 412 LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaS 491 (1715)
|++++.|+.|+|||++++. .+..+.+|.+.+.+..+
T Consensus 182 Lat~s~D~~IrIwD~Rsg~---------~i~tl~gH~g~~~s~~v----------------------------------- 217 (568)
T PTZ00420 182 LSGTCVGKHMHIIDPRKQE---------IASSFHIHDGGKNTKNI----------------------------------- 217 (568)
T ss_pred EEEEecCCEEEEEECCCCc---------EEEEEecccCCceeEEE-----------------------------------
Confidence 9999999999999998753 24455666554332211
Q ss_pred EcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC----
Q 048801 492 CSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC---- 567 (1715)
Q Consensus 492 gS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG---- 567 (1715)
....|++++.+|++++.|+
T Consensus 218 ---------------------------------------------------------~~~~fs~d~~~IlTtG~d~~~~R 240 (568)
T PTZ00420 218 ---------------------------------------------------------WIDGLGGDDNYILSTGFSKNNMR 240 (568)
T ss_pred ---------------------------------------------------------EeeeEcCCCCEEEEEEcCCCCcc
Confidence 1124566777777776664
Q ss_pred eEEEEECCC-CceEEEEec--CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEc--ccceEEEEEEcCCC
Q 048801 568 RICVWNAVD-GSLVHSLTG--HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEI--GRFKLVDGKFSPDG 642 (1715)
Q Consensus 568 tI~IWDl~s-g~~l~tL~g--H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~--h~~~V~svafSPDG 642 (1715)
.|+|||+++ +.++..+.. +.+.+. ..|.++++.++++|+.|++|++|++..+.. ..+.. +..++..++|.|..
T Consensus 241 ~VkLWDlr~~~~pl~~~~ld~~~~~L~-p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 241 EMKLWDLKNTTSALVTMSIDNASAPLI-PHYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEEEECCCCCCceEEEEecCCccceE-EeeeCCCCCEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 688888874 455555432 223222 234455788999999999999999987742 22221 34567788888864
No 97
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.90 E-value=2.3e-22 Score=254.15 Aligned_cols=318 Identities=19% Similarity=0.282 Sum_probs=229.9
Q ss_pred CCCceeeeeeccccCcccccCC--CCcccccccccccC-----ccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeC
Q 048801 191 QADQVHGLSLREIGGGFKKHHR--APSVCSACYAIAKP-----STMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSD 263 (1715)
Q Consensus 191 ~~d~V~~ls~~~~g~~~~~~~~--~~~i~~~~~~~~~~-----~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~ 263 (1715)
...++-.+...+.|..++.+.. ...+. .|..... .....-.+.+.....|.+.|+|+.|++||.+||+||+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~--iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIV--IWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccce--eeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 3445667777777766665441 11111 1111100 0000123466778899999999999999999999999
Q ss_pred CCcEEEEeCCC------------------CcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeC
Q 048801 264 DRLVKIWSMET------------------AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRG 325 (1715)
Q Consensus 264 DGtIrIWDl~t------------------gk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~g 325 (1715)
|+.|.||.... .+++.+|.+|.+.|.+++|+|++.+||+++.|++|.||+..+.+.+.++.+
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeec
Confidence 99999998762 146778999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEE
Q 048801 326 HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAY 405 (1715)
Q Consensus 326 H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtslaf 405 (1715)
|.+.|..+.|.|-|+ +|++-+.|++|+||++.+-.....+.-+-.. ......+..+.|
T Consensus 170 H~s~VKGvs~DP~Gk---y~ASqsdDrtikvwrt~dw~i~k~It~pf~~-------------------~~~~T~f~RlSW 227 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGK---YFASQSDDRTLKVWRTSDWGIEKSITKPFEE-------------------SPLTTFFLRLSW 227 (942)
T ss_pred ccccccceEECCccC---eeeeecCCceEEEEEcccceeeEeeccchhh-------------------CCCcceeeeccc
Confidence 999999999999998 9999999999999997765544444322111 112344789999
Q ss_pred ccCCCeEEEecC----CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccC
Q 048801 406 NANGTVFVTGSS----DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKN 481 (1715)
Q Consensus 406 SpdG~~LatGs~----DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~ 481 (1715)
||||.+|+++.. -.++.|.+-.+ ...-..+.||..++.++.|+|.-+-... . +......
T Consensus 228 SPDG~~las~nA~n~~~~~~~IieR~t---------Wk~~~~LvGH~~p~evvrFnP~lfe~~~------~--ng~~~~~ 290 (942)
T KOG0973|consen 228 SPDGHHLASPNAVNGGKSTIAIIERGT---------WKVDKDLVGHSAPVEVVRFNPKLFERNN------K--NGTSTQP 290 (942)
T ss_pred CCCcCeecchhhccCCcceeEEEecCC---------ceeeeeeecCCCceEEEEeChHHhcccc------c--cCCccCC
Confidence 999999998643 34566766644 3345678899999999999995321000 0 0000000
Q ss_pred CcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEE
Q 048801 482 SWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL 561 (1715)
Q Consensus 482 s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~La 561 (1715)
. ..-..+++|+.|++|.||.....+.+..+ ..-....|..++|+|||..|+
T Consensus 291 ~-~~y~i~AvgSqDrSlSVW~T~~~RPl~vi----------------------------~~lf~~SI~DmsWspdG~~Lf 341 (942)
T KOG0973|consen 291 N-CYYCIAAVGSQDRSLSVWNTALPRPLFVI----------------------------HNLFNKSIVDMSWSPDGFSLF 341 (942)
T ss_pred C-cceEEEEEecCCccEEEEecCCCCchhhh----------------------------hhhhcCceeeeeEcCCCCeEE
Confidence 0 00137899999999999987643321111 111245799999999999999
Q ss_pred EEecCCeEEEEECCCCc
Q 048801 562 AAIMDCRICVWNAVDGS 578 (1715)
Q Consensus 562 Tgs~DGtI~IWDl~sg~ 578 (1715)
+++.||+|.+..+...+
T Consensus 342 acS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 342 ACSLDGTVALIHFEEKE 358 (942)
T ss_pred EEecCCeEEEEEcchHH
Confidence 99999999999886644
No 98
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=2.1e-22 Score=235.32 Aligned_cols=310 Identities=15% Similarity=0.191 Sum_probs=233.3
Q ss_pred CcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC----ceEEE-eCCCCCeEEEEecCCCCcceEEEEec
Q 048801 275 AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL----PISVL-RGHTGAVTAIAFSPRPSAIYQLLSSS 349 (1715)
Q Consensus 275 gk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~----~l~~L-~gH~~~VtsLafSPdg~~~~~LaSgS 349 (1715)
+..-..+.+|+..|.++++.|.|..|++|+.|-+|++||+.... ..+.| ......|.+++|++.+. .|++.+
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~---~iLvvs 233 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD---QILVVS 233 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC---eEEEEe
Confidence 34455688999999999999999999999999999999986431 12222 23456899999999988 677777
Q ss_pred CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCC
Q 048801 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 350 ~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t 428 (1715)
.....+|+|-...+...... ... .........+|...++|.+|+|.. ..|++++.||+++||++..
T Consensus 234 g~aqakl~DRdG~~~~e~~K---GDQ----------YI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~ 300 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSK---GDQ----------YIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNN 300 (641)
T ss_pred cCcceeEEccCCceeeeeec---cch----------hhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCC
Confidence 77889999865443322211 000 111233456788899999999965 5789999999999999986
Q ss_pred CCccCCCCCceeee--eecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCC
Q 048801 429 SSVEDSEQPIHELD--VLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 506 (1715)
Q Consensus 429 ~~~~~~~~~~~~l~--~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~ 506 (1715)
.+. ....+. ...+..-+++.++|++++ ..|++|..||+|.+|+..+.
T Consensus 301 ~k~-----q~qVik~k~~~g~Rv~~tsC~~nrdg--------------------------~~iAagc~DGSIQ~W~~~~~ 349 (641)
T KOG0772|consen 301 TKS-----QLQVIKTKPAGGKRVPVTSCAWNRDG--------------------------KLIAAGCLDGSIQIWDKGSR 349 (641)
T ss_pred chh-----heeEEeeccCCCcccCceeeecCCCc--------------------------chhhhcccCCceeeeecCCc
Confidence 531 111111 112344578999999997 78999999999999998642
Q ss_pred ccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCC--CeeEEEeCCCCCEEEEEecCCeEEEEECCCC-ceEEEE
Q 048801 507 RSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPR--GVNMIVWSLDNRFVLAAIMDCRICVWNAVDG-SLVHSL 583 (1715)
Q Consensus 507 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~--~VtslafSPDG~~LaTgs~DGtI~IWDl~sg-~~l~tL 583 (1715)
.... ....-.+|.. .|+||+||+||++|++-+.|+++++||++.. +++.+.
T Consensus 350 ~v~p--------------------------~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~ 403 (641)
T KOG0772|consen 350 TVRP--------------------------VMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVR 403 (641)
T ss_pred cccc--------------------------ceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhh
Confidence 2100 1112234544 7999999999999999999999999999875 455555
Q ss_pred ecC--CCCeEEEEEccCCCcEEEEEe------CCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEE
Q 048801 584 TGH--SASSYVLDVHPFNPRIAMSAG------YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIY 655 (1715)
Q Consensus 584 ~gH--~~~V~sLafSP~dg~lLaSgs------~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~ 655 (1715)
.+- .-+-+.++||| +.++|++|. .-|++++||..+...+..+......|..+.|+|--+.|++|+.||.++
T Consensus 404 tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~ 482 (641)
T KOG0772|consen 404 TGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAH 482 (641)
T ss_pred cCCCccCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceE
Confidence 443 23456789999 778888875 357899999999999999988888999999999999999999999999
Q ss_pred EEE
Q 048801 656 LLN 658 (1715)
Q Consensus 656 IWd 658 (1715)
||=
T Consensus 483 vyY 485 (641)
T KOG0772|consen 483 VYY 485 (641)
T ss_pred EEE
Confidence 974
No 99
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=3.5e-23 Score=233.87 Aligned_cols=290 Identities=18% Similarity=0.292 Sum_probs=230.6
Q ss_pred eEEEEcCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 235 NIKKLRGHRDAVYCAIFDRSG-RFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 235 ~l~~L~GH~~~Vt~VafSpDG-~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
-+..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+....++.++..|.+.|..|++.. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 355689999999999999977 7899999999999999999999999999999999999986 6788999999999999
Q ss_pred CCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCC
Q 048801 314 LPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSN 393 (1715)
Q Consensus 314 l~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~ 393 (1715)
++- .++.++.+ ...+..|.-+..+. .++|+|.+ |.|||......+..+..
T Consensus 136 ~~~-~p~~tilg-~s~~~gIdh~~~~~---~FaTcGe~--i~IWD~~R~~Pv~smsw----------------------- 185 (433)
T KOG0268|consen 136 IDG-PPLHTILG-KSVYLGIDHHRKNS---VFATCGEQ--IDIWDEQRDNPVSSMSW----------------------- 185 (433)
T ss_pred ccC-Ccceeeec-cccccccccccccc---cccccCce--eeecccccCCccceeec-----------------------
Confidence 754 46777763 35567777666555 67888764 89999876554443322
Q ss_pred CCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccc
Q 048801 394 GLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFK 472 (1715)
Q Consensus 394 ~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~ 472 (1715)
....|.++.|+|.. .+|++|+.|+.|.+||++.+.. .+.+.. .-.-+.|+|+|.+
T Consensus 186 --G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P------l~KVi~----~mRTN~IswnPea------------ 241 (433)
T KOG0268|consen 186 --GADSISSVKFNPVETSILASCASDRSIVLYDLRQASP------LKKVIL----TMRTNTICWNPEA------------ 241 (433)
T ss_pred --CCCceeEEecCCCcchheeeeccCCceEEEecccCCc------cceeee----eccccceecCccc------------
Confidence 24558999999965 5677777999999999987542 222211 1234678999965
Q ss_pred ccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEE
Q 048801 473 EENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIV 552 (1715)
Q Consensus 473 ~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsla 552 (1715)
..|++++.|..+..||++.- ..++....+|...|..+.
T Consensus 242 --------------fnF~~a~ED~nlY~~DmR~l----------------------------~~p~~v~~dhvsAV~dVd 279 (433)
T KOG0268|consen 242 --------------FNFVAANEDHNLYTYDMRNL----------------------------SRPLNVHKDHVSAVMDVD 279 (433)
T ss_pred --------------cceeeccccccceehhhhhh----------------------------cccchhhcccceeEEEec
Confidence 68999999999999999852 234556778899999999
Q ss_pred eCCCCCEEEEEecCCeEEEEECCCCceEEEEec-CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceE
Q 048801 553 WSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG-HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPI 623 (1715)
Q Consensus 553 fSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g-H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l 623 (1715)
|||.|+-+++|+.|.+|+||.+..+...-.+.. .-..|.|+.||. |.+++++|+.|+.|++|.....+.+
T Consensus 280 fsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 280 FSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred cCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-cccEEEecCCCcceeeeecchhhhc
Confidence 999999999999999999999988765444321 124589999999 8899999999999999987654444
No 100
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=1.5e-21 Score=235.35 Aligned_cols=400 Identities=17% Similarity=0.244 Sum_probs=280.7
Q ss_pred eeEEEEcCCCCCeEEEEEcCCCC---EEEEEeCCCcEEEEeCCCC--cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCe
Q 048801 234 QNIKKLRGHRDAVYCAIFDRSGR---FVITGSDDRLVKIWSMETA--FCLASCRGHEGDITDLAVSSNNTLVASASNDFV 308 (1715)
Q Consensus 234 k~l~~L~GH~~~Vt~VafSpDG~---~LaTGS~DGtIrIWDl~tg--k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGt 308 (1715)
..+..+.||.++|+|+.|-|+.. ++++|+.||.|++|.+... ..+.++.+|...+.|+ ........+.+.|++
T Consensus 45 ~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv--~a~~~~~~~~~ad~~ 122 (764)
T KOG1063|consen 45 LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCV--VARSSVMTCKAADGT 122 (764)
T ss_pred eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEE--EeeeeEEEeeccCce
Confidence 46778999999999999999887 8999999999999999743 4456677766555544 333333333367888
Q ss_pred eEEEECCCC--------------------------------------------------CceEEEeCCCCCeEEEEecCC
Q 048801 309 IRVWRLPDG--------------------------------------------------LPISVLRGHTGAVTAIAFSPR 338 (1715)
Q Consensus 309 IrVWDl~tg--------------------------------------------------~~l~~L~gH~~~VtsLafSPd 338 (1715)
+.+||.+.. ..+..+.||.+.|.+|+|...
T Consensus 123 v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~ 202 (764)
T KOG1063|consen 123 VSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARL 202 (764)
T ss_pred EEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhcc
Confidence 899987321 123456799999999999987
Q ss_pred CCcceEEEEecCCCcEEEEecCCCCCcc----eecCCCCCCC---ccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCe
Q 048801 339 PSAIYQLLSSSDDGTCRIWDARYSQYSP----RIYLPKPPDA---ITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTV 411 (1715)
Q Consensus 339 g~~~~~LaSgS~DGtVrIWDl~tg~~l~----~i~~~~~~~~---i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~ 411 (1715)
+....+|+++|.|..|+||.+.-+.... .......... ..... ..-.........+|...|.++.|+|.+..
T Consensus 203 ~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~-i~~~is~eall~GHeDWV~sv~W~p~~~~ 281 (764)
T KOG1063|consen 203 GGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEE-IQYRISFEALLMGHEDWVYSVWWHPEGLD 281 (764)
T ss_pred CCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeee-EEEEEehhhhhcCcccceEEEEEccchhh
Confidence 7655699999999999999886443221 1111000000 00000 00000112344589999999999999988
Q ss_pred EEEecCCCeEEEEeCCCCCccC---------C----------------------------------CCCceeeeeecCCC
Q 048801 412 FVTGSSDTFARVWSACKSSVED---------S----------------------------------EQPIHELDVLSGHE 448 (1715)
Q Consensus 412 LatGs~DG~IrVWDl~t~~~~~---------~----------------------------------~~~~~~l~~l~gH~ 448 (1715)
|++++.|.++.+|......... . .........+.||.
T Consensus 282 LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~ 361 (764)
T KOG1063|consen 282 LLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHV 361 (764)
T ss_pred heecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccc
Confidence 9999999999999765431000 0 00001122345666
Q ss_pred CCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCC
Q 048801 449 NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPL 528 (1715)
Q Consensus 449 ~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~ 528 (1715)
+.|..|+|.|.| .+|++.+.|.+-++|-.-..+ ..|
T Consensus 362 ~~V~dv~W~psG--------------------------eflLsvs~DQTTRlFa~wg~q-----~~w------------- 397 (764)
T KOG1063|consen 362 DGVKDVDWDPSG--------------------------EFLLSVSLDQTTRLFARWGRQ-----QEW------------- 397 (764)
T ss_pred ccceeeeecCCC--------------------------CEEEEeccccceeeecccccc-----cce-------------
Confidence 666666666655 799999999999998443111 011
Q ss_pred CCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC--------------------------------
Q 048801 529 PPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD-------------------------------- 576 (1715)
Q Consensus 529 ~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s-------------------------------- 576 (1715)
..+.+-+.|...++|++|-+....+++|.....+++|+...
T Consensus 398 -------HEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLS 470 (764)
T KOG1063|consen 398 -------HEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLS 470 (764)
T ss_pred -------eeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccccccc
Confidence 23445566888899999988666778888888889997641
Q ss_pred -----------Cc---------------------------------eEEEEecCCCCeEEEEEccCCCcEEEEEeCCC--
Q 048801 577 -----------GS---------------------------------LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDG-- 610 (1715)
Q Consensus 577 -----------g~---------------------------------~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DG-- 610 (1715)
|. .++.+.||...|++++.+| ++.++||++...
T Consensus 471 nKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ 549 (764)
T KOG1063|consen 471 NKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLK 549 (764)
T ss_pred CCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCc
Confidence 00 1223568999999999999 889999987543
Q ss_pred ---cEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----------cccccccceeecCC
Q 048801 611 ---RTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE----------SQKDAKYDQFFLGD 677 (1715)
Q Consensus 611 ---tI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe----------~~k~~~~~~~fs~D 677 (1715)
.|+||+..+...+..+..|.-.|+.++|||||++|++++.|.++.+|....+. .......+..|+||
T Consensus 550 ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd 629 (764)
T KOG1063|consen 550 EHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPD 629 (764)
T ss_pred cceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcc
Confidence 58999999999999999999999999999999999999999999999975432 23445566778888
Q ss_pred CccEEEcCCCC
Q 048801 678 YRPLIRDSLGN 688 (1715)
Q Consensus 678 ~r~L~~d~~g~ 688 (1715)
...++..+.+.
T Consensus 630 e~~FaTaSRDK 640 (764)
T KOG1063|consen 630 EKYFATASRDK 640 (764)
T ss_pred cceeEEecCCc
Confidence 88877655444
No 101
>PF02138 Beach: Beige/BEACH domain; InterPro: IPR000409 The BEACH domain is found in eukaryotic proteins that have diverse cellular functions ranging from lysosomal traffic to apoptosis and cytokinesisin vesicle trafficking, membrane dynamics, and receptor signaling. The name BEACH is derived from beige and Chediak-Higashi syndrome (CHS). CHS is a rare, autosomal recessive disorder that can cause severe immunodeficiency and albinism in humans and other mammals, and beige is the name for the CHS disease in mice [, ]. The BEACH domain was first described in the lysosomal-trafficking regulators Beige protein and its human homologue CHS protein Q99698 from SWISSPROT. It is also found in distantly related proteins like, for example, the FAN proteins O35242 from SWISSPROT and Q92636 from SWISSPROT which are factor associated with neutral sphingomyelinase activation []. It has also been described in Dictyostelium proteins Lvs []. The BEACH domain is usually followed by a series of WD repeats (PDOC00574 from PROSITEDOC). The function of the BEACH domain is unknown.; PDB: 1MI1_B 1T77_C.
Probab=99.90 E-value=7.2e-25 Score=252.36 Aligned_cols=128 Identities=13% Similarity=0.138 Sum_probs=89.8
Q ss_pred ccCcccCCchhhHHHHhhhhhhhhhcccccccccchhHHHHHHHHhhccCc-------------------hhhHHHHHHH
Q 048801 14 SLGKAPLKFSSTVQEMAQLEQQDMVANQVVEADVDLREVYFLIIHFLSSGP-------------------CQRTLGLLWN 74 (1715)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~i~ElyfLi~~fL~~gp-------------------~~~~~~~L~R 74 (1715)
.|++.---|.|+...|..|.. ++.|++|+|||||++|+.|+|.+. ....|+.+||
T Consensus 120 ~fD~~~r~F~SI~~~~~~~~~------~~~d~~EliPEff~~Pe~f~N~n~~~~g~~~~~~dV~LP~Wa~s~~~FV~~~R 193 (270)
T PF02138_consen 120 KFDVPDRLFSSIEDTWNSVTE------NMNDVKELIPEFFYLPEFFKNINNFDLGKGEDVDDVELPPWAKSPFEFVYKHR 193 (270)
T ss_dssp S---CCCSS-BHHHHHHHHHH-------TT----B-GGGGT-GGGGS-TT-SS--BS-B-SS-B--TT-SSHHHHHHHHH
T ss_pred ccCCchHHHHHHHHHHHHhhc------CCccccccChhhhCCHHHhcccccccccCCCccceeecCCccchHHHHHHHHH
Confidence 355555569999999999887 888999999999999999998766 4589999999
Q ss_pred HHHhcCCCccccccc----cccCCCCCCCCCCCCCccccCcccccccCCCCChHHHHHHHHHHHhcCCCCCCCccCCCCC
Q 048801 75 ELLEHQLLPRRYHAW----FSRSGVNSGNDNDDGISFPLSYNKLVERYPHIEWDHLVKLLRQLLLYKASPFHGRIGGIAP 150 (1715)
Q Consensus 75 eALESeyVS~~LH~W----FGyKQrG~eAv~A~NVFh~LTYEG~Vdld~i~dp~~r~aie~QI~nFGQTP~QL~~~pHPP 150 (1715)
+||||+|||++||+| |||||+|++|++|.|||||++|++.+ +.|+.++.+++.++.+|||+|.|||.+|||+
T Consensus 194 ~aLES~~VS~~L~~WIDLIFG~kq~G~~A~~a~Nvf~p~~Y~~~~----~~~~~~~~~~~~~~~~~Gq~P~QLF~~pHP~ 269 (270)
T PF02138_consen 194 KALESDYVSQNLHHWIDLIFGYKQRGKEAVEAKNVFHPLTYEDSW----IEDPMEREAIEAQLKNFGQVPIQLFTKPHPK 269 (270)
T ss_dssp HHHCSHHHHTTHHHHHHHHTSCCCSCHHHHHTT--B-CCCSTTS-------SHHHHHHHHHHHHHC--------SS----
T ss_pred HHHhhhHHHhhhhHHHHHhhCcccccHHHHHHhhcccccCCCccc----cCCHHHHHHHHHHHHhcCCChHHHhCCCCCC
Confidence 999999999999999 99999999999999999999999988 7779999999999999999999999999998
Q ss_pred C
Q 048801 151 N 151 (1715)
Q Consensus 151 r 151 (1715)
|
T Consensus 270 R 270 (270)
T PF02138_consen 270 R 270 (270)
T ss_dssp -
T ss_pred C
Confidence 6
No 102
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.4e-22 Score=222.50 Aligned_cols=330 Identities=20% Similarity=0.267 Sum_probs=255.0
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEec
Q 048801 257 FVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFS 336 (1715)
Q Consensus 257 ~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafS 336 (1715)
.|++.-.+++++ .++++.+.||...|+.++......++.+++.|.+.+||.+++|.++.++.||.+.|++|.|+
T Consensus 126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH 199 (481)
T ss_pred hheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEec
Confidence 344455566543 24667789999999999998888899999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCC-------------CccC--ccCCCCCCCCCCCCCCCCccee
Q 048801 337 PRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPD-------------AITG--KSNVPSNNGPSSSNGLQSHQIL 401 (1715)
Q Consensus 337 Pdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~-------------~i~g--~~~~~~~~~~~~~~~~h~~~Vt 401 (1715)
+.+. ++++++.|++-.||...-.-.++.-..+.... ...+ .........+...+.+|...|.
T Consensus 200 ~s~~---L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~ 276 (481)
T KOG0300|consen 200 NSGL---LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVS 276 (481)
T ss_pred cccc---eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceE
Confidence 9886 89999999999999743211111110100000 0000 0001111223445567888899
Q ss_pred EEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccC
Q 048801 402 CCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKN 481 (1715)
Q Consensus 402 slafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~ 481 (1715)
++.|...|+.+++++.|.+..+||+.++. .+..+.||....+.++-+|..
T Consensus 277 a~dWL~gg~Q~vTaSWDRTAnlwDVEtge---------~v~~LtGHd~ELtHcstHptQ--------------------- 326 (481)
T KOG0300|consen 277 ACDWLAGGQQMVTASWDRTANLWDVETGE---------VVNILTGHDSELTHCSTHPTQ--------------------- 326 (481)
T ss_pred ehhhhcCcceeeeeeccccceeeeeccCc---------eeccccCcchhccccccCCcc---------------------
Confidence 99999999999999999999999999864 478899999999999888864
Q ss_pred CcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEE
Q 048801 482 SWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL 561 (1715)
Q Consensus 482 s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~La 561 (1715)
.++++.+.|.+.++||++.. ...+..+.+|...|+++.|..+. .++
T Consensus 327 -----rLVvTsSrDtTFRLWDFRea----------------------------I~sV~VFQGHtdtVTS~vF~~dd-~vV 372 (481)
T KOG0300|consen 327 -----RLVVTSSRDTTFRLWDFREA----------------------------IQSVAVFQGHTDTVTSVVFNTDD-RVV 372 (481)
T ss_pred -----eEEEEeccCceeEeccchhh----------------------------cceeeeecccccceeEEEEecCC-cee
Confidence 78999999999999999831 12355688999999999999765 578
Q ss_pred EEecCCeEEEEECCCCc-eEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEE-----EcccceEEE
Q 048801 562 AAIMDCRICVWNAVDGS-LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY-----EIGRFKLVD 635 (1715)
Q Consensus 562 Tgs~DGtI~IWDl~sg~-~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl-----~~h~~~V~s 635 (1715)
+|+.|.+|+|||+++.+ ++.++. ...+++.++.+. ++.+++.--.+..|++||+. |..+..+ ++|..-|.|
T Consensus 373 SgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~-g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c 449 (481)
T KOG0300|consen 373 SGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTC 449 (481)
T ss_pred ecCCCceEEEeeeccccCcceeee-cCCccceeEeec-CCceEEeccCCceEEEEecC-CCccccCCcccccccceeeee
Confidence 89999999999998865 455665 456788999987 77788888888899999984 5444433 367778999
Q ss_pred EEEcCCC--CEEEEEeCCCeEEEEECCCC
Q 048801 636 GKFSPDG--TSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 636 vafSPDG--~~LAsgs~DG~I~IWdl~tG 662 (1715)
++|..+. .-|++++.|..+.-|.+...
T Consensus 450 ~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 450 CAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eeccccCcccccccccccceeeeeEeccc
Confidence 9998764 34889999999999998653
No 103
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=4.9e-23 Score=236.26 Aligned_cols=285 Identities=18% Similarity=0.332 Sum_probs=236.2
Q ss_pred cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC--ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCc
Q 048801 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL--PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGT 353 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~--~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGt 353 (1715)
.....+..|.+.|..+.|-++...|++|+.|..|++|++..++ .+.+|.|..+.|+.+.|.+++. ++++++.|+.
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~---~~iAas~d~~ 242 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNK---HVIAASNDKN 242 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCc---eEEeecCCCc
Confidence 4455677899999999999998999999999999999987665 6778888899999999999988 8999999999
Q ss_pred EEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccC
Q 048801 354 CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVED 433 (1715)
Q Consensus 354 VrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~ 433 (1715)
+++|++...+...+ ..+|...|+++.|......+++|+.|.+|++||+....+
T Consensus 243 ~r~Wnvd~~r~~~T-------------------------LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C-- 295 (459)
T KOG0288|consen 243 LRLWNVDSLRLRHT-------------------------LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC-- 295 (459)
T ss_pred eeeeeccchhhhhh-------------------------hcccccceeeehhhccccceeeccccchhhhhhhhhhhe--
Confidence 99999987765433 345788999999988777799999999999999976432
Q ss_pred CCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccc
Q 048801 434 SEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVG 513 (1715)
Q Consensus 434 ~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~ 513 (1715)
..++. ....++.|..++ ..+++|..|+.|++||.++....
T Consensus 296 -------~kt~l-~~S~cnDI~~~~----------------------------~~~~SgH~DkkvRfwD~Rs~~~~---- 335 (459)
T KOG0288|consen 296 -------SKTVL-PGSQCNDIVCSI----------------------------SDVISGHFDKKVRFWDIRSADKT---- 335 (459)
T ss_pred -------ecccc-ccccccceEecc----------------------------eeeeecccccceEEEeccCCcee----
Confidence 22111 122344444432 47889999999999999864311
Q ss_pred cccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecC----CCC
Q 048801 514 RWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH----SAS 589 (1715)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH----~~~ 589 (1715)
. ..+..+.|+++..+++|..|.+++.|.++.+.|+++.+..+.+.+. ...
T Consensus 336 -------------------------~-sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asD 389 (459)
T KOG0288|consen 336 -------------------------R-SVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD 389 (459)
T ss_pred -------------------------e-EeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccc
Confidence 1 1223448999999999999999999999999999999988888642 334
Q ss_pred eEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccce--EEEEEEcCCCCEEEEEeCCCeEEEE
Q 048801 590 SYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFK--LVDGKFSPDGTSIVLSDDVGQIYLL 657 (1715)
Q Consensus 590 V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~--V~svafSPDG~~LAsgs~DG~I~IW 657 (1715)
.+.+.||| ++.|+++|+.||.|+||++.+|++...+...... |++++|+|.|..|++++.++.+.+|
T Consensus 390 wtrvvfSp-d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 390 WTRVVFSP-DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred cceeEECC-CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 78899999 8899999999999999999999999888865554 9999999999999999999999999
No 104
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.3e-20 Score=225.38 Aligned_cols=331 Identities=18% Similarity=0.197 Sum_probs=247.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcE-EEEecCC-CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCc
Q 048801 242 HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFC-LASCRGH-EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLP 319 (1715)
Q Consensus 242 H~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~-l~tL~gH-s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~ 319 (1715)
-...|+|+||+.+.+.||.+-.||.|-||++..+-. ...+.|+ ...|-+++|+ ++..|++.+.+|.|.-||+.++++
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce
Confidence 356899999999999999999999999999987643 4456665 4589999999 556788888999999999999999
Q ss_pred eEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcc
Q 048801 320 ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ 399 (1715)
Q Consensus 320 l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~ 399 (1715)
...+....+.|++++.+|.+. .++.|+.||.+.++++..+.......+. ...+.
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~---~l~IgcddGvl~~~s~~p~~I~~~r~l~-----------------------rq~sR 156 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENT---ILAIGCDDGVLYDFSIGPDKITYKRSLM-----------------------RQKSR 156 (691)
T ss_pred eEEecCCCcceeEEEeCCccc---eEEeecCCceEEEEecCCceEEEEeecc-----------------------cccce
Confidence 999999999999999999987 8999999998888887766544333221 22567
Q ss_pred eeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecC-CCCCeeEEEEccCccccccccccccccccccc
Q 048801 400 ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSG-HENDVNYVQFSGCAVASRSAMSDAFKEENVPK 478 (1715)
Q Consensus 400 VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~g-H~~~V~sLafspdg~as~~~~~~~~~~~~~~~ 478 (1715)
|.+++|++++..|++|+.||.|++||+.++..... . ...+..+.. ...-|.++.|..+
T Consensus 157 vLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~-~-~~~~d~l~k~~~~iVWSv~~Lrd------------------- 215 (691)
T KOG2048|consen 157 VLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHI-I-TMQLDRLSKREPTIVWSVLFLRD------------------- 215 (691)
T ss_pred EEEEEecCCccEEEecccCceEEEEEcCCCceEEE-e-eecccccccCCceEEEEEEEeec-------------------
Confidence 99999999999999999999999999987542100 0 000111111 2334666666654
Q ss_pred ccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC
Q 048801 479 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR 558 (1715)
Q Consensus 479 ~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~ 558 (1715)
..|++|..-|+|.+||...+. .++....|...|.+++.++++.
T Consensus 216 --------~tI~sgDS~G~V~FWd~~~gT-----------------------------LiqS~~~h~adVl~Lav~~~~d 258 (691)
T KOG2048|consen 216 --------STIASGDSAGTVTFWDSIFGT-----------------------------LIQSHSCHDADVLALAVADNED 258 (691)
T ss_pred --------CcEEEecCCceEEEEcccCcc-----------------------------hhhhhhhhhcceeEEEEcCCCC
Confidence 589999999999999988633 3445667888999999999999
Q ss_pred EEEEEecCCeEEEEECCCCce----EEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC---------------
Q 048801 559 FVLAAIMDCRICVWNAVDGSL----VHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE--------------- 619 (1715)
Q Consensus 559 ~LaTgs~DGtI~IWDl~sg~~----l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t--------------- 619 (1715)
+|++++.|+.|.-|...++.. ......|...|.+++..+ ..+++||.|.++.+-....
T Consensus 259 ~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~---~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~ 335 (691)
T KOG2048|consen 259 RVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE---NALISGGRDFTLAICSSREFKNMDHRQKNLFPAS 335 (691)
T ss_pred eEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec---ceEEecceeeEEEEccccccCchhhhcccccccc
Confidence 999999999999988766543 222346888888888765 2667777777666543211
Q ss_pred ---------------------------C---------ceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 620 ---------------------------G---------TPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 620 ---------------------------g---------k~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
. .+++........|.+.+.||||++||.+.- ..++||.+..
T Consensus 336 ~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~ 412 (691)
T KOG2048|consen 336 DRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQP 412 (691)
T ss_pred ceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEecc
Confidence 0 001111123446888999999999998764 4566776653
No 105
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.5e-22 Score=233.95 Aligned_cols=281 Identities=18% Similarity=0.256 Sum_probs=231.7
Q ss_pred CCCCeEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCc
Q 048801 242 HRDAVYCAIFDRSGR--FVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLP 319 (1715)
Q Consensus 242 H~~~Vt~VafSpDG~--~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~ 319 (1715)
..+.|++++|+|... +.+|+| -.|.||+..+.....++......|.++.|-.||++||+|+..|.|+|+|+.+...
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i 102 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI 102 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc--cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHH
Confidence 346799999999543 344443 4799999998888888888889999999999999999999999999999877778
Q ss_pred eEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcc
Q 048801 320 ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ 399 (1715)
Q Consensus 320 l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~ 399 (1715)
++.+.+|+.+|..+.|+|.+.. .|++|+.|+.+++||+.+... .+ ...+|...
T Consensus 103 LR~~~ah~apv~~~~f~~~d~t--~l~s~sDd~v~k~~d~s~a~v--~~-----------------------~l~~htDY 155 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQDNT--MLVSGSDDKVVKYWDLSTAYV--QA-----------------------ELSGHTDY 155 (487)
T ss_pred HHHHhhccCceeEEEecccCCe--EEEecCCCceEEEEEcCCcEE--EE-----------------------EecCCcce
Confidence 8899999999999999998874 789999999999999987653 11 13457888
Q ss_pred eeEEEEccC-CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccccc
Q 048801 400 ILCCAYNAN-GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPK 478 (1715)
Q Consensus 400 VtslafSpd-G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~ 478 (1715)
|.|.+|+|. +.++++|+.||.|++||++... ..+. --.|..+|..+.|.|.|
T Consensus 156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~--------~~v~-elnhg~pVe~vl~lpsg------------------ 208 (487)
T KOG0310|consen 156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLT--------SRVV-ELNHGCPVESVLALPSG------------------ 208 (487)
T ss_pred eEeeccccCCCeEEEecCCCceEEEEEeccCC--------ceeE-EecCCCceeeEEEcCCC------------------
Confidence 999999995 5589999999999999998631 1222 23588899999999976
Q ss_pred ccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC
Q 048801 479 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR 558 (1715)
Q Consensus 479 ~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~ 558 (1715)
..|++++ ...++|||+.++. ........|...|+|+++..++.
T Consensus 209 --------s~iasAg-Gn~vkVWDl~~G~----------------------------qll~~~~~H~KtVTcL~l~s~~~ 251 (487)
T KOG0310|consen 209 --------SLIASAG-GNSVKVWDLTTGG----------------------------QLLTSMFNHNKTVTCLRLASDST 251 (487)
T ss_pred --------CEEEEcC-CCeEEEEEecCCc----------------------------eehhhhhcccceEEEEEeecCCc
Confidence 5666665 5689999998543 12233445888999999999999
Q ss_pred EEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 559 FVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 559 ~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
.|++|+-|+.|+|||+.+.+.++.+. ..++|.+++.+| ++..++.|..||.+.+-+.
T Consensus 252 rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~-dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 252 RLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSP-DDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred eEeecccccceEEEEccceEEEEeee-cccceeeEEecC-CCceEEEecccceeeeehh
Confidence 99999999999999998888888876 678899999999 6777888999998877644
No 106
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.89 E-value=1.3e-21 Score=236.11 Aligned_cols=283 Identities=19% Similarity=0.308 Sum_probs=235.8
Q ss_pred cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCce--EEEeCCCCCeEE-EEecCCCCcceEEEEecCCC
Q 048801 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPI--SVLRGHTGAVTA-IAFSPRPSAIYQLLSSSDDG 352 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l--~~L~gH~~~Vts-LafSPdg~~~~~LaSgS~DG 352 (1715)
++.+.+.||...|..+++.+. ..++++|.||+++||+-.....+ ..+.+|.+-|.+ +++.+..+. .|++|+.|.
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~--~l~~g~~D~ 81 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKG--RLVVGGMDT 81 (745)
T ss_pred eeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCc--ceEeecccc
Confidence 456788999999999988754 48999999999999997655443 456678888877 888763332 699999999
Q ss_pred cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCcc
Q 048801 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVE 432 (1715)
Q Consensus 353 tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~ 432 (1715)
+|.+|...+.. +.....+|...|.|++...++. +++|+-|.+++||-..
T Consensus 82 ~i~v~~~~~~~-------------------------P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~----- 130 (745)
T KOG0301|consen 82 TIIVFKLSQAE-------------------------PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG----- 130 (745)
T ss_pred eEEEEecCCCC-------------------------chhhhhccccceeeeecCCcCc-eEecccccceEEecch-----
Confidence 99999876544 2334566788899999888887 9999999999999874
Q ss_pred CCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccc
Q 048801 433 DSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKV 512 (1715)
Q Consensus 433 ~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~ 512 (1715)
.+...+.+|+..|.++++.|. ..++||+.|.+|++|.-.
T Consensus 131 ------~l~~~l~gH~asVWAv~~l~e---------------------------~~~vTgsaDKtIklWk~~-------- 169 (745)
T KOG0301|consen 131 ------ELVYSLQGHTASVWAVASLPE---------------------------NTYVTGSADKTIKLWKGG-------- 169 (745)
T ss_pred ------hhhcccCCcchheeeeeecCC---------------------------CcEEeccCcceeeeccCC--------
Confidence 345668999999999999885 489999999999999543
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEE
Q 048801 513 GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYV 592 (1715)
Q Consensus 513 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~s 592 (1715)
.....+.+|..-|+.+++-+++ .+++++.||.|++|++ +|+++..+.||+.-|++
T Consensus 170 -----------------------~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYs 224 (745)
T KOG0301|consen 170 -----------------------TLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYS 224 (745)
T ss_pred -----------------------chhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEE
Confidence 3456788899999999998775 4667899999999999 89999999999999999
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 593 LDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 593 LafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
+.... +..+++|+|.|++++||+.. ++++.+......|+++.+-++|. |++|+.||.|+||.....
T Consensus 225 is~~~-~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 225 ISMAL-SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred EEecC-CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 99666 66788999999999999975 88888885566899999988886 788999999999997643
No 107
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=9.2e-21 Score=222.61 Aligned_cols=295 Identities=16% Similarity=0.203 Sum_probs=211.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEE-EEEeCCCeeEEEECCCCCceEEEeCCCCCeEEE
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLV-ASASNDFVIRVWRLPDGLPISVLRGHTGAVTAI 333 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lL-ASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsL 333 (1715)
+..+++++.|+.|++||+.+++.+..+.++.. +.+++|+|++..+ ++++.++.|++||+.+++.+..+..+.. +..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF 78 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence 35788999999999999999999998886654 6789999999876 5677889999999999988877765543 5788
Q ss_pred EecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEE
Q 048801 334 AFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFV 413 (1715)
Q Consensus 334 afSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~La 413 (1715)
+|+|+++. .+++++.++.|++||+.+.+.+..+.. ...+.+++|+|+|.+++
T Consensus 79 ~~~~~g~~--l~~~~~~~~~l~~~d~~~~~~~~~~~~--------------------------~~~~~~~~~~~dg~~l~ 130 (300)
T TIGR03866 79 ALHPNGKI--LYIANEDDNLVTVIDIETRKVLAEIPV--------------------------GVEPEGMAVSPDGKIVV 130 (300)
T ss_pred EECCCCCE--EEEEcCCCCeEEEEECCCCeEEeEeeC--------------------------CCCcceEEECCCCCEEE
Confidence 99999872 344556789999999987654333211 12356799999999999
Q ss_pred EecCCC-eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceE-EE
Q 048801 414 TGSSDT-FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNI-VT 491 (1715)
Q Consensus 414 tGs~DG-~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~L-aS 491 (1715)
++..++ .+.+||..++.. +..+. ....+.+++|++++ ..| ++
T Consensus 131 ~~~~~~~~~~~~d~~~~~~---------~~~~~-~~~~~~~~~~s~dg--------------------------~~l~~~ 174 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEI---------VDNVL-VDQRPRFAEFTADG--------------------------KELWVS 174 (300)
T ss_pred EEecCCCeEEEEeCCCCeE---------EEEEE-cCCCccEEEECCCC--------------------------CEEEEE
Confidence 888765 567788865432 11111 12345678899886 445 55
Q ss_pred EcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEE-ecCCeEE
Q 048801 492 CSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAA-IMDCRIC 570 (1715)
Q Consensus 492 gS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTg-s~DGtI~ 570 (1715)
+..+|.|.+||+.+++....+. .... + ..........++|+|++++++++ +.++.|.
T Consensus 175 ~~~~~~v~i~d~~~~~~~~~~~-------~~~~----------~-----~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 175 SEIGGTVSVIDVATRKVIKKIT-------FEIP----------G-----VHPEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred cCCCCEEEEEEcCcceeeeeee-------eccc----------c-----cccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 5679999999998754322110 0000 0 00001123468899999986554 4567899
Q ss_pred EEECCCCceEEEEecCCCCeEEEEEccCCCcEEEE-EeCCCcEEEEECCCCceEEEEEcccceEEEEEEcC
Q 048801 571 VWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMS-AGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSP 640 (1715)
Q Consensus 571 IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaS-gs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSP 640 (1715)
+||+.+++.+..+. +...+.+++|+| ++.+|++ ++.+|.|.|||+.+++++..+..+ ...+.++|+|
T Consensus 233 v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 233 VVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 99999988876654 445789999999 4455554 467999999999999999999865 4558888875
No 108
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.6e-21 Score=204.26 Aligned_cols=301 Identities=21% Similarity=0.326 Sum_probs=233.5
Q ss_pred CceeeeeeccccCcccccCCCCccccccccc-ccCcc-----ccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 048801 193 DQVHGLSLREIGGGFKKHHRAPSVCSACYAI-AKPST-----MVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRL 266 (1715)
Q Consensus 193 d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~-~~~~~-----~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGt 266 (1715)
..|+.+.|.+.|+.++...+...+....|.. ..+.. .....-..++-+.|.+.|+|++|+|+|.+||||+.|.+
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ 112 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT 112 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce
Confidence 4578899999999999887776655544432 22211 11122345566789999999999999999999999999
Q ss_pred EEEEeCCCCcEE-----EEecCCCCCeEEEEECC----CCCEEEEEeC-CCeeEEEECCCCCceEEEeCCCCCeEEEEec
Q 048801 267 VKIWSMETAFCL-----ASCRGHEGDITDLAVSS----NNTLVASASN-DFVIRVWRLPDGLPISVLRGHTGAVTAIAFS 336 (1715)
Q Consensus 267 IrIWDl~tgk~l-----~tL~gHs~~VtsLafSp----Dg~lLASGS~-DGtIrVWDl~tg~~l~~L~gH~~~VtsLafS 336 (1715)
|++.-.....+. ..+.-|.+.|..++|-. .+.+|++++. |..|++-|..+|+....+.+|++-|.++- +
T Consensus 113 ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-s 191 (350)
T KOG0641|consen 113 IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-S 191 (350)
T ss_pred EEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-E
Confidence 999866533222 24667999999999964 3568888654 88899999999999999999999998873 2
Q ss_pred CCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec
Q 048801 337 PRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS 416 (1715)
Q Consensus 337 Pdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs 416 (1715)
-++. .+++|+.|.+|++||++-..++..+.... .........|.+++..|.|++|++|-
T Consensus 192 wn~~---m~~sgsqdktirfwdlrv~~~v~~l~~~~------------------~~~glessavaav~vdpsgrll~sg~ 250 (350)
T KOG0641|consen 192 WNGA---MFASGSQDKTIRFWDLRVNSCVNTLDNDF------------------HDGGLESSAVAAVAVDPSGRLLASGH 250 (350)
T ss_pred ecCc---EEEccCCCceEEEEeeeccceeeeccCcc------------------cCCCcccceeEEEEECCCcceeeecc
Confidence 2333 79999999999999998766555432211 11123356799999999999999999
Q ss_pred CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC
Q 048801 417 SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG 496 (1715)
Q Consensus 417 ~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG 496 (1715)
.|....+||++.+ ..++.+..|...|.|+.|+|.. .++++|+.|.
T Consensus 251 ~dssc~lydirg~---------r~iq~f~phsadir~vrfsp~a--------------------------~yllt~syd~ 295 (350)
T KOG0641|consen 251 ADSSCMLYDIRGG---------RMIQRFHPHSADIRCVRFSPGA--------------------------HYLLTCSYDM 295 (350)
T ss_pred CCCceEEEEeeCC---------ceeeeeCCCccceeEEEeCCCc--------------------------eEEEEecccc
Confidence 9999999999875 4578889999999999999976 7999999999
Q ss_pred eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECC
Q 048801 497 SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV 575 (1715)
Q Consensus 497 sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~ 575 (1715)
.|++-|+...- ....++..+..|...+..+.|.|..-.+++.+.|.++.+|-+.
T Consensus 296 ~ikltdlqgdl-------------------------a~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 296 KIKLTDLQGDL-------------------------AHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eEEEeecccch-------------------------hhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999887411 0112344456688888899999999999999999999999763
No 109
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.1e-21 Score=238.45 Aligned_cols=278 Identities=19% Similarity=0.273 Sum_probs=232.0
Q ss_pred EEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceec
Q 048801 290 DLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIY 369 (1715)
Q Consensus 290 sLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~ 369 (1715)
-+.|+ ..+.||.|.. ..|++|+-.++........+...|+++.|+++|. +|++|..+|.|.|||....+.+..+.
T Consensus 182 lldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~---~LavG~~~g~v~iwD~~~~k~~~~~~ 256 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGS---HLAVGTSDGTVQIWDVKEQKKTRTLR 256 (484)
T ss_pred Hhhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCC---EEEEeecCCeEEEEehhhcccccccc
Confidence 35677 3446666643 5899999999986666665689999999999998 89999999999999998765444331
Q ss_pred CCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC
Q 048801 370 LPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN 449 (1715)
Q Consensus 370 ~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~ 449 (1715)
..|...|-|++|+ +..+.+|+.++.|.++|++.... ....+.+|..
T Consensus 257 ------------------------~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~--------~~~~~~~H~q 302 (484)
T KOG0305|consen 257 ------------------------GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH--------VVSTLQGHRQ 302 (484)
T ss_pred ------------------------CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh--------hhhhhhcccc
Confidence 1267789999998 67899999999999999987532 2334889999
Q ss_pred CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCC
Q 048801 450 DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLP 529 (1715)
Q Consensus 450 ~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~ 529 (1715)
.|..+.|++++ .++++|+.|+.+.|||...
T Consensus 303 eVCgLkws~d~--------------------------~~lASGgnDN~~~Iwd~~~------------------------ 332 (484)
T KOG0305|consen 303 EVCGLKWSPDG--------------------------NQLASGGNDNVVFIWDGLS------------------------ 332 (484)
T ss_pred eeeeeEECCCC--------------------------CeeccCCCccceEeccCCC------------------------
Confidence 99999999987 8999999999999999853
Q ss_pred CCCCCCCCcccccCCCCCeeEEEeCC-CCCEEEEE--ecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEE
Q 048801 530 PQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVLAA--IMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSA 606 (1715)
Q Consensus 530 ~~~~~g~~~~~l~~h~~~VtslafSP-DG~~LaTg--s~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSg 606 (1715)
..+...+..|...|.+++|+| ...+||+| +.|++|++||..+|..+..+. ....|..|.|++....++.+.
T Consensus 333 -----~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 333 -----PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTH 406 (484)
T ss_pred -----ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEec
Confidence 235567788999999999999 45677875 469999999999999988876 445699999999665666665
Q ss_pred e-CCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 607 G-YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 607 s-~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
| .++.|.||+..+.+.+..+.+|...|..+++||||..|++|+.|.++++|++-..
T Consensus 407 G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 407 GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 4 4678999999999999999999999999999999999999999999999998654
No 110
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=218.20 Aligned_cols=304 Identities=20% Similarity=0.255 Sum_probs=218.4
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEE--EEec--CCCCCeEEEEECCCCCEEE-EEeCCCeeE
Q 048801 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCL--ASCR--GHEGDITDLAVSSNNTLVA-SASNDFVIR 310 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l--~tL~--gHs~~VtsLafSpDg~lLA-SGS~DGtIr 310 (1715)
+..|+||.+.|++++|+.||++|||++.|++|+||++.+.... +.++ ---+--+.++|+||-+-++ ++-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 3468999999999999999999999999999999999764221 1111 1123467899999876554 444556899
Q ss_pred EEECCC---CCceE---------EEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCcc
Q 048801 311 VWRLPD---GLPIS---------VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAIT 378 (1715)
Q Consensus 311 VWDl~t---g~~l~---------~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~ 378 (1715)
+|.+.. |.... .-+.|.-.|..+-....+. +|++++.|..|.+|++. |+.+..+....
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k---~imsas~dt~i~lw~lk-Gq~L~~idtnq------ 228 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK---YIMSASLDTKICLWDLK-GQLLQSIDTNQ------ 228 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCce---EEEEecCCCcEEEEecC-Cceeeeecccc------
Confidence 997642 32211 1124566677777766665 89999999999999998 77666553321
Q ss_pred CccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEcc
Q 048801 379 GKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSG 458 (1715)
Q Consensus 379 g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafsp 458 (1715)
..-+.++.||+|++|++++..-.|.||.+--.+- ...+....+..+.||...|..++|++
T Consensus 229 -------------------~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kd-G~fqev~rvf~LkGH~saV~~~aFsn 288 (420)
T KOG2096|consen 229 -------------------SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKD-GTFQEVKRVFSLKGHQSAVLAAAFSN 288 (420)
T ss_pred -------------------ccccceeeCCCCcEEEEecCCCCceEEEEEeccC-cchhhhhhhheeccchhheeeeeeCC
Confidence 1245688999999999999999999999854321 22344555678999999999999999
Q ss_pred CcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCc
Q 048801 459 CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPR 538 (1715)
Q Consensus 459 dg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~ 538 (1715)
+. ..+++.+.||+++|||++-. |.....+. ....++.
T Consensus 289 ~S--------------------------~r~vtvSkDG~wriwdtdVr------------Y~~~qDpk-----~Lk~g~~ 325 (420)
T KOG2096|consen 289 SS--------------------------TRAVTVSKDGKWRIWDTDVR------------YEAGQDPK-----ILKEGSA 325 (420)
T ss_pred Cc--------------------------ceeEEEecCCcEEEeeccce------------EecCCCch-----HhhcCCc
Confidence 86 79999999999999998631 11111000 0001111
Q ss_pred ccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe-cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 539 QRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT-GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 539 ~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~-gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
-+....+.-..++++|.|+.||.+. ...|.++...+|+..-.+. .|...|.+|+|++ ++++++|+| |..++|..
T Consensus 326 -pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 326 -PLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCG-DRYVRVIR 400 (420)
T ss_pred -chhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeec-ceeeeeec
Confidence 1111122233799999999998654 5689999999998877774 6999999999999 888998876 66777765
No 111
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.5e-20 Score=198.71 Aligned_cols=299 Identities=17% Similarity=0.244 Sum_probs=229.2
Q ss_pred EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC------C-----Cc-e---EEEeCCCCCeEEEEecCCCCcc
Q 048801 278 LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD------G-----LP-I---SVLRGHTGAVTAIAFSPRPSAI 342 (1715)
Q Consensus 278 l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t------g-----~~-l---~~L~gH~~~VtsLafSPdg~~~ 342 (1715)
+.+|. .+..|.+++|+|.|.+.|+|+...+++|..... + .+ . +.-+.|.+.|+|.+|+|.+.
T Consensus 26 i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge-- 102 (350)
T KOG0641|consen 26 INILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE-- 102 (350)
T ss_pred EEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC--
Confidence 33444 466899999999999999999999999875422 1 11 1 12246889999999999998
Q ss_pred eEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc----CCCeEEEecC-
Q 048801 343 YQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA----NGTVFVTGSS- 417 (1715)
Q Consensus 343 ~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp----dG~~LatGs~- 417 (1715)
+|++|+.|.+|++.-++...+. ..+.......|.+.|..++|.. .|.+|++++.
T Consensus 103 -liatgsndk~ik~l~fn~dt~~--------------------~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag 161 (350)
T KOG0641|consen 103 -LIATGSNDKTIKVLPFNADTCN--------------------ATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG 161 (350)
T ss_pred -eEEecCCCceEEEEeccccccc--------------------ccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC
Confidence 8999999999999876543321 1223344566888999999964 3567776653
Q ss_pred CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEE-EccCcccccccccccccccccccccCCcccCceEEEEcCCC
Q 048801 418 DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQ-FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG 496 (1715)
Q Consensus 418 DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLa-fspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG 496 (1715)
|..|++-|..++ ..+..+.+|++-|.++- |+. -.|++|+.|.
T Consensus 162 dc~iy~tdc~~g---------~~~~a~sghtghilalyswn~----------------------------~m~~sgsqdk 204 (350)
T KOG0641|consen 162 DCKIYITDCGRG---------QGFHALSGHTGHILALYSWNG----------------------------AMFASGSQDK 204 (350)
T ss_pred cceEEEeecCCC---------CcceeecCCcccEEEEEEecC----------------------------cEEEccCCCc
Confidence 555666666543 44778899999998763 332 5899999999
Q ss_pred eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC
Q 048801 497 SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD 576 (1715)
Q Consensus 497 sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s 576 (1715)
+|++||++-..++..+..-. ..+ --....|.+++..|.|++|++|..|....+||++.
T Consensus 205 tirfwdlrv~~~v~~l~~~~----------------~~~------glessavaav~vdpsgrll~sg~~dssc~lydirg 262 (350)
T KOG0641|consen 205 TIRFWDLRVNSCVNTLDNDF----------------HDG------GLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG 262 (350)
T ss_pred eEEEEeeeccceeeeccCcc----------------cCC------CcccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence 99999998543332221100 000 01235689999999999999999999999999999
Q ss_pred CceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC----ceEEEEEcccceEEEEEEcCCCCEEEEEeCCC
Q 048801 577 GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG----TPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVG 652 (1715)
Q Consensus 577 g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg----k~l~tl~~h~~~V~svafSPDG~~LAsgs~DG 652 (1715)
++.++.+..|...|.++.|+| +..++++|++|..|++-|+... -++.....|...+..+.|+|..-.+++.+.|.
T Consensus 263 ~r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadk 341 (350)
T KOG0641|consen 263 GRMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK 341 (350)
T ss_pred CceeeeeCCCccceeEEEeCC-CceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcc
Confidence 999999999999999999999 8899999999999999998532 23444556888899999999999999999999
Q ss_pred eEEEEECC
Q 048801 653 QIYLLNTG 660 (1715)
Q Consensus 653 ~I~IWdl~ 660 (1715)
++.+|-+.
T Consensus 342 t~tlwa~~ 349 (350)
T KOG0641|consen 342 TATLWALN 349 (350)
T ss_pred eEEEeccC
Confidence 99999763
No 112
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=4.7e-20 Score=215.41 Aligned_cols=431 Identities=16% Similarity=0.212 Sum_probs=294.2
Q ss_pred ccCCcccCCCCCCCCceeeeeeccccC---cccccCCCCccccc--ccccccCccccccceeEEEEcCCCCCeEEEEEcC
Q 048801 179 KPLPAYLRWPHMQADQVHGLSLREIGG---GFKKHHRAPSVCSA--CYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDR 253 (1715)
Q Consensus 179 ~~p~~~~r~~~~~~d~V~~ls~~~~g~---~~~~~~~~~~i~~~--~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSp 253 (1715)
+.||+...|+...-..++.+.+...|. .|+..+....++.. ........|.++........+.-...|..+.|+|
T Consensus 131 ~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHP 210 (626)
T KOG2106|consen 131 PLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHP 210 (626)
T ss_pred cCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEecc
Confidence 344566667665555555555444431 12222222222222 1223345667777777777777888999999999
Q ss_pred CCC-EEEEEeCCCcEEEEeCCCCcEEEE---ecCC-CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCC
Q 048801 254 SGR-FVITGSDDRLVKIWSMETAFCLAS---CRGH-EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTG 328 (1715)
Q Consensus 254 DG~-~LaTGS~DGtIrIWDl~tgk~l~t---L~gH-s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~ 328 (1715)
.+. +++|++ -|.+.+|+++++.+.+. +..+ ..-|.|++|.++|. +++|..+|+|.||+..+.+..+....|.+
T Consensus 211 td~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~g 288 (626)
T KOG2106|consen 211 TDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDG 288 (626)
T ss_pred CCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCC
Confidence 665 555554 68999999998866554 3333 35799999999985 67999999999999988877777779999
Q ss_pred CeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCc----cCccCCC------------CCCCCCCC
Q 048801 329 AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAI----TGKSNVP------------SNNGPSSS 392 (1715)
Q Consensus 329 ~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i----~g~~~~~------------~~~~~~~~ 392 (1715)
.|.+++...+| .|++|+.|..|..||- .-+.+..+.+|.....+ .+...+. ........
T Consensus 289 gv~~L~~lr~G----tllSGgKDRki~~Wd~-~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~ 363 (626)
T KOG2106|consen 289 GVFSLCMLRDG----TLLSGGKDRKIILWDD-NYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLT 363 (626)
T ss_pred ceEEEEEecCc----cEeecCccceEEeccc-cccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEE
Confidence 99999999998 5888999999999993 33333334443322211 0111100 11112333
Q ss_pred CCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccc
Q 048801 393 NGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFK 472 (1715)
Q Consensus 393 ~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~ 472 (1715)
..+|..+.+.++.+|+...+++++.|+.+++|+- .+ +..-..-..++.|+.|+|.+
T Consensus 364 v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~--~k----------~~wt~~~~d~~~~~~fhpsg------------ 419 (626)
T KOG2106|consen 364 VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWND--HK----------LEWTKIIEDPAECADFHPSG------------ 419 (626)
T ss_pred EEecccceeeEEcCCChhheeeccCcceEEEccC--Cc----------eeEEEEecCceeEeeccCcc------------
Confidence 4567888999999999999999999999999992 21 11222345688899999964
Q ss_pred ccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEE
Q 048801 473 EENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIV 552 (1715)
Q Consensus 473 ~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsla 552 (1715)
.++.|...|...+.|..+...+ .+.....+++++.
T Consensus 420 ---------------~va~Gt~~G~w~V~d~e~~~lv------------------------------~~~~d~~~ls~v~ 454 (626)
T KOG2106|consen 420 ---------------VVAVGTATGRWFVLDTETQDLV------------------------------TIHTDNEQLSVVR 454 (626)
T ss_pred ---------------eEEEeeccceEEEEecccceeE------------------------------EEEecCCceEEEE
Confidence 8999999999999998863311 1122256799999
Q ss_pred eCCCCCEEEEEecCCeEEEEECCC-CceEEEE-ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEE-----
Q 048801 553 WSLDNRFVLAAIMDCRICVWNAVD-GSLVHSL-TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRI----- 625 (1715)
Q Consensus 553 fSPDG~~LaTgs~DGtI~IWDl~s-g~~l~tL-~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~t----- 625 (1715)
|+|+|.+||.|+.|+.|+||.+.. |.....+ ..|..+|+.+.|++ |+.++.+-+.|-.|..|.....+.+..
T Consensus 455 ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~-Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvk 533 (626)
T KOG2106|consen 455 YSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS-DSQFLVSNSGDYEILYWKPSECKQITSVKDVK 533 (626)
T ss_pred EcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecC-CCceEEeccCceEEEEEccccCcccceeccee
Confidence 999999999999999999999865 4443333 23458999999999 888999999999999995432221111
Q ss_pred ---------EE----cccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc---------cccccceeecCCCccEEE
Q 048801 626 ---------YE----IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ---------KDAKYDQFFLGDYRPLIR 683 (1715)
Q Consensus 626 ---------l~----~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~---------k~~~~~~~fs~D~r~L~~ 683 (1715)
|. .+...|..++-+.+.++||+|++.|.|++|.-.--+.. ......+.|+-+-..|+.
T Consensus 534 W~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~ 613 (626)
T KOG2106|consen 534 WATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLIS 613 (626)
T ss_pred eeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEe
Confidence 11 12234556677888899999999999999985322111 233344556655555554
Q ss_pred cCC
Q 048801 684 DSL 686 (1715)
Q Consensus 684 d~~ 686 (1715)
...
T Consensus 614 tg~ 616 (626)
T KOG2106|consen 614 TGK 616 (626)
T ss_pred cCC
Confidence 433
No 113
>PTZ00421 coronin; Provisional
Probab=99.88 E-value=5.9e-21 Score=239.84 Aligned_cols=267 Identities=16% Similarity=0.188 Sum_probs=198.8
Q ss_pred CCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc
Q 048801 328 GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA 407 (1715)
Q Consensus 328 ~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp 407 (1715)
..|....+++++. .+++++.+.....|+...+..+ +.... .|. .........+|...|++++|+|
T Consensus 21 ~~i~~~~~~~d~~---~~~~~n~~~~a~~w~~~gg~~v--~~~~~-----~G~-----~~~~~~~l~GH~~~V~~v~fsP 85 (493)
T PTZ00421 21 LNVTPSTALWDCS---NTIACNDRFIAVPWQQLGSTAV--LKHTD-----YGK-----LASNPPILLGQEGPIIDVAFNP 85 (493)
T ss_pred eccccccccCCCC---CcEeECCceEEEEEecCCceEE--eeccc-----ccc-----CCCCCceEeCCCCCEEEEEEcC
Confidence 4455566666755 5788888888888987655321 11110 011 0011223457889999999999
Q ss_pred -CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccC
Q 048801 408 -NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCH 486 (1715)
Q Consensus 408 -dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~ 486 (1715)
++.+|++|+.||.|+|||+.+.... ......+..+.+|...|.+++|+|.+ .
T Consensus 86 ~d~~~LaSgS~DgtIkIWdi~~~~~~--~~~~~~l~~L~gH~~~V~~l~f~P~~-------------------------~ 138 (493)
T PTZ00421 86 FDPQKLFTASEDGTIMGWGIPEEGLT--QNISDPIVHLQGHTKKVGIVSFHPSA-------------------------M 138 (493)
T ss_pred CCCCEEEEEeCCCEEEEEecCCCccc--cccCcceEEecCCCCcEEEEEeCcCC-------------------------C
Confidence 8899999999999999999764321 11123466789999999999999975 3
Q ss_pred ceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC
Q 048801 487 DNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD 566 (1715)
Q Consensus 487 ~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D 566 (1715)
+.|++++.|++|+|||+.++. ....+..|...|.+++|+|+|.+|++|+.|
T Consensus 139 ~iLaSgs~DgtVrIWDl~tg~-----------------------------~~~~l~~h~~~V~sla~spdG~lLatgs~D 189 (493)
T PTZ00421 139 NVLASAGADMVVNVWDVERGK-----------------------------AVEVIKCHSDQITSLEWNLDGSLLCTTSKD 189 (493)
T ss_pred CEEEEEeCCCEEEEEECCCCe-----------------------------EEEEEcCCCCceEEEEEECCCCEEEEecCC
Confidence 689999999999999998643 223345678889999999999999999999
Q ss_pred CeEEEEECCCCceEEEEecCCCC-eEEEEEccCCCcEEEEE---eCCCcEEEEECCCCc-eEEEEEccc-ceEEEEEEcC
Q 048801 567 CRICVWNAVDGSLVHSLTGHSAS-SYVLDVHPFNPRIAMSA---GYDGRTIVWDIWEGT-PIRIYEIGR-FKLVDGKFSP 640 (1715)
Q Consensus 567 GtI~IWDl~sg~~l~tL~gH~~~-V~sLafSP~dg~lLaSg---s~DGtI~VWDl~tgk-~l~tl~~h~-~~V~svafSP 640 (1715)
+.|+|||+++++.+..+.+|.+. +..+.|++.++.++.+| +.|+.|+|||+.+.. ++.....+. ..+....|++
T Consensus 190 g~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~ 269 (493)
T PTZ00421 190 KKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDE 269 (493)
T ss_pred CEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcC
Confidence 99999999999999999999765 34677888555555444 247999999998754 444444333 3455678999
Q ss_pred CCCEEEEEe-CCCeEEEEECCCCccc
Q 048801 641 DGTSIVLSD-DVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 641 DG~~LAsgs-~DG~I~IWdl~tGe~~ 665 (1715)
|+.+|++++ .||.|++|++.+++.+
T Consensus 270 d~~~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 270 DTNLLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred CCCEEEEEEeCCCeEEEEEeeCCceE
Confidence 999999887 5999999999888654
No 114
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=5.6e-21 Score=213.69 Aligned_cols=270 Identities=17% Similarity=0.275 Sum_probs=217.4
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCC
Q 048801 284 HEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQ 363 (1715)
Q Consensus 284 Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~ 363 (1715)
....|.+|.|+|.+..|+++++||++++|++........+. |..++.+++|.++. .+++|+.||.|+.+|+.++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~----~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADES----TIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCc----eEEEeccCceEEEEEecCCc
Confidence 36689999999999999999999999999998876655565 99999999999975 68999999999999998765
Q ss_pred CcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeee
Q 048801 364 YSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV 443 (1715)
Q Consensus 364 ~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~ 443 (1715)
.. ..+.|...|+|+.+++....+++|+.|++|++||.+.... ...
T Consensus 87 ~~--------------------------~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~---------~~~ 131 (323)
T KOG1036|consen 87 ED--------------------------QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV---------VGT 131 (323)
T ss_pred ce--------------------------eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc---------ccc
Confidence 32 2345788899999999888999999999999999985321 111
Q ss_pred ecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccC
Q 048801 444 LSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKV 523 (1715)
Q Consensus 444 l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~ 523 (1715)
+. ....|.++.... +.|++|+.|..+.+||+++.....
T Consensus 132 ~d-~~kkVy~~~v~g----------------------------~~LvVg~~~r~v~iyDLRn~~~~~------------- 169 (323)
T KOG1036|consen 132 FD-QGKKVYCMDVSG----------------------------NRLVVGTSDRKVLIYDLRNLDEPF------------- 169 (323)
T ss_pred cc-cCceEEEEeccC----------------------------CEEEEeecCceEEEEEcccccchh-------------
Confidence 11 223677777654 689999999999999999633111
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCC----ceEEEEecCCC---------Ce
Q 048801 524 PPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG----SLVHSLTGHSA---------SS 590 (1715)
Q Consensus 524 ~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg----~~l~tL~gH~~---------~V 590 (1715)
..+...-...++||++-|++.=+++++.||.|.+=.+... .....|+.|.. +|
T Consensus 170 --------------q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPV 235 (323)
T KOG1036|consen 170 --------------QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPV 235 (323)
T ss_pred --------------hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEe
Confidence 1112223457899999999888999999999988766554 34456677743 78
Q ss_pred EEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeC
Q 048801 591 YVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDD 650 (1715)
Q Consensus 591 ~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~ 650 (1715)
++|+|||- -..|||||.||.|.+||+.+.+.+..+......|..++|+.||..||+++.
T Consensus 236 Nai~Fhp~-~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 236 NAIAFHPI-HGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceeEeccc-cceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99999994 567899999999999999999999888766678999999999999999865
No 115
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=4.7e-21 Score=223.03 Aligned_cols=275 Identities=19% Similarity=0.258 Sum_probs=225.1
Q ss_pred EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceE-----------------EE-eCCCCCeEEEEecCCC
Q 048801 278 LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS-----------------VL-RGHTGAVTAIAFSPRP 339 (1715)
Q Consensus 278 l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~-----------------~L-~gH~~~VtsLafSPdg 339 (1715)
+..+..|.-+|+||+++|++.++++++.+|+|.=|++.+|.... .- .+|...|.+++.++++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 45567799999999999999999999999999999998875331 11 2788899999999999
Q ss_pred CcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC
Q 048801 340 SAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT 419 (1715)
Q Consensus 340 ~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG 419 (1715)
+ +|++|+.|..|.||+..+.+.+.. +..|...|.+++|-.....|.+++.|.
T Consensus 215 k---ylatgg~d~~v~Iw~~~t~ehv~~-------------------------~~ghr~~V~~L~fr~gt~~lys~s~Dr 266 (479)
T KOG0299|consen 215 K---YLATGGRDRHVQIWDCDTLEHVKV-------------------------FKGHRGAVSSLAFRKGTSELYSASADR 266 (479)
T ss_pred c---EEEecCCCceEEEecCcccchhhc-------------------------ccccccceeeeeeecCccceeeeecCC
Confidence 8 999999999999999988764433 345788899999998888899999999
Q ss_pred eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEE
Q 048801 420 FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAI 499 (1715)
Q Consensus 420 ~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIr 499 (1715)
.|++|++.. ...+.++.+|.+.|..|....-. ..+-+|+.|++++
T Consensus 267 svkvw~~~~---------~s~vetlyGHqd~v~~IdaL~re--------------------------R~vtVGgrDrT~r 311 (479)
T KOG0299|consen 267 SVKVWSIDQ---------LSYVETLYGHQDGVLGIDALSRE--------------------------RCVTVGGRDRTVR 311 (479)
T ss_pred ceEEEehhH---------hHHHHHHhCCccceeeechhccc--------------------------ceEEeccccceeE
Confidence 999999975 34477889999999988766532 4455566999999
Q ss_pred EEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCce
Q 048801 500 IWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL 579 (1715)
Q Consensus 500 IWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~ 579 (1715)
+|++.. .....+.++.+.+.|++|-.+ ..+++|+.+|.|.+|++...++
T Consensus 312 lwKi~e------------------------------esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 312 LWKIPE------------------------------ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKP 360 (479)
T ss_pred EEeccc------------------------------cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCc
Confidence 998853 122345567788999999754 5778999999999999999988
Q ss_pred EEEEe-cC-----------CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC----ceEEEEEcccceEEEEEEcCCCC
Q 048801 580 VHSLT-GH-----------SASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG----TPIRIYEIGRFKLVDGKFSPDGT 643 (1715)
Q Consensus 580 l~tL~-gH-----------~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg----k~l~tl~~h~~~V~svafSPDG~ 643 (1715)
+.+.. +| ...|++|+..| +..++++|+.+|.|++|-+.+| +++..+. -.+-|..++|+++|+
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGK 438 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecc-cCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCC
Confidence 88764 22 22789999999 8899999999999999999887 4455554 566799999999999
Q ss_pred EEEEE
Q 048801 644 SIVLS 648 (1715)
Q Consensus 644 ~LAsg 648 (1715)
.|++|
T Consensus 439 ~ivag 443 (479)
T KOG0299|consen 439 RIVAG 443 (479)
T ss_pred EEEEe
Confidence 77776
No 116
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.3e-21 Score=211.81 Aligned_cols=259 Identities=24% Similarity=0.371 Sum_probs=206.9
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---cEEEEecCCCCCeEEEEECC--CCCEEEEEeCCCeeEEEE
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA---FCLASCRGHEGDITDLAVSS--NNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg---k~l~tL~gHs~~VtsLafSp--Dg~lLASGS~DGtIrVWD 313 (1715)
-.+|.+.|..+..+-.|+.|||++.|++|+|+.+... +++.+|.||.++|..++|.. -|.+||+++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 3579999999999999999999999999999998653 57889999999999999976 799999999999999999
Q ss_pred CCCCC--ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 314 LPDGL--PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 314 l~tg~--~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
-.+|+ .......|...|++++|.|.+-.. .|++++.||.|.|.+++... ......
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl-~LacasSDG~vsvl~~~~~g----------------------~w~t~k 143 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGL-LLACASSDGKVSVLTYDSSG----------------------GWTTSK 143 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccce-EEEEeeCCCcEEEEEEcCCC----------------------Cccchh
Confidence 88774 344567899999999999987543 89999999999999887541 111222
Q ss_pred CCCCCCcceeEEEEccC---C-----------CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEc
Q 048801 392 SNGLQSHQILCCAYNAN---G-----------TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS 457 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpd---G-----------~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafs 457 (1715)
....|.-.|++++|.|. | +.||+|+.|..|+||+...+. ...-..|.+|.+.|+.++|.
T Consensus 144 i~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-------w~~e~~l~~H~dwVRDVAwa 216 (299)
T KOG1332|consen 144 IVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-------WKLERTLEGHKDWVRDVAWA 216 (299)
T ss_pred hhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc-------hhhhhhhhhcchhhhhhhhc
Confidence 34456777899999885 4 569999999999999998652 23345589999999999999
Q ss_pred cCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCC
Q 048801 458 GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP 537 (1715)
Q Consensus 458 pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 537 (1715)
|... +....|++|+.||++.||..+. . ...|...
T Consensus 217 P~~g----------------------l~~s~iAS~SqDg~viIwt~~~-e----~e~wk~t------------------- 250 (299)
T KOG1332|consen 217 PSVG----------------------LPKSTIASCSQDGTVIIWTKDE-E----YEPWKKT------------------- 250 (299)
T ss_pred cccC----------------------CCceeeEEecCCCcEEEEEecC-c----cCccccc-------------------
Confidence 9641 1136899999999999997652 1 1122111
Q ss_pred cccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECC
Q 048801 538 RQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV 575 (1715)
Q Consensus 538 ~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~ 575 (1715)
.+...+..+..+.||+.|++|++++.|+.|.+|.-.
T Consensus 251 --ll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 251 --LLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred --ccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 122245678999999999999999999999999753
No 117
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.9e-21 Score=225.21 Aligned_cols=298 Identities=19% Similarity=0.306 Sum_probs=234.5
Q ss_pred EEeCC-CcEEEEeCCCCcEEEEecCC-CCCeEEEEECCCCCEEEEEeC-CCeeEEEECCCCCceEEEeCCCCCeEEEEec
Q 048801 260 TGSDD-RLVKIWSMETAFCLASCRGH-EGDITDLAVSSNNTLVASASN-DFVIRVWRLPDGLPISVLRGHTGAVTAIAFS 336 (1715)
Q Consensus 260 TGS~D-GtIrIWDl~tgk~l~tL~gH-s~~VtsLafSpDg~lLASGS~-DGtIrVWDl~tg~~l~~L~gH~~~VtsLafS 336 (1715)
+++.| ..+.+||+.||..+.++++. ...-.++..- .+.+++++.. ...|.+|.+..........--.++|.+++-+
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS 90 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence 34444 55999999999999999875 2222222221 3456666654 4579999987655444333356789999999
Q ss_pred CCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec
Q 048801 337 PRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS 416 (1715)
Q Consensus 337 Pdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs 416 (1715)
|.|. +|+.|+..|.|++|.+.+|.++..+ ..|-..|+|+.|+-||.+|++|+
T Consensus 91 n~G~---~l~ag~i~g~lYlWelssG~LL~v~-------------------------~aHYQ~ITcL~fs~dgs~iiTgs 142 (476)
T KOG0646|consen 91 NLGY---FLLAGTISGNLYLWELSSGILLNVL-------------------------SAHYQSITCLKFSDDGSHIITGS 142 (476)
T ss_pred CCce---EEEeecccCcEEEEEeccccHHHHH-------------------------HhhccceeEEEEeCCCcEEEecC
Confidence 9986 6777779999999999999876543 34677799999999999999999
Q ss_pred CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC
Q 048801 417 SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG 496 (1715)
Q Consensus 417 ~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG 496 (1715)
.||.|.+|.+...-.........++..+..|+-+|+.+...+.+. ..+|+|++.|.
T Consensus 143 kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~------------------------~~rl~TaS~D~ 198 (476)
T KOG0646|consen 143 KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGT------------------------NARLYTASEDR 198 (476)
T ss_pred CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCc------------------------cceEEEecCCc
Confidence 999999999865432222334567889999999999999887541 36999999999
Q ss_pred eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC
Q 048801 497 SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD 576 (1715)
Q Consensus 497 sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s 576 (1715)
++++||+..+..+.. ...+..+.+++++|-++.+++|+.+|.|.+.++..
T Consensus 199 t~k~wdlS~g~LLlt------------------------------i~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~ 248 (476)
T KOG0646|consen 199 TIKLWDLSLGVLLLT------------------------------ITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFK 248 (476)
T ss_pred eEEEEEeccceeeEE------------------------------EecCCcceeEEEcccccEEEecCCcceEEeeehhc
Confidence 999999987543222 22356789999999999999999999999988743
Q ss_pred ----------------CceEEEEecCCC--CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEE
Q 048801 577 ----------------GSLVHSLTGHSA--SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKF 638 (1715)
Q Consensus 577 ----------------g~~l~tL~gH~~--~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svaf 638 (1715)
+..+..+.||.+ .|+|++++- |+.+|++|+.||.|+|||+.+.++++++....++|+.+.+
T Consensus 249 ~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 249 LSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred CCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEe
Confidence 335667889988 999999998 8899999999999999999999999999877888998888
Q ss_pred cCC
Q 048801 639 SPD 641 (1715)
Q Consensus 639 SPD 641 (1715)
.|-
T Consensus 328 ~~~ 330 (476)
T KOG0646|consen 328 NPL 330 (476)
T ss_pred ecc
Confidence 664
No 118
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.5e-21 Score=233.84 Aligned_cols=282 Identities=18% Similarity=0.278 Sum_probs=229.7
Q ss_pred CCCCEEEEEeCCCeeEEEECCCCC------ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCccee
Q 048801 295 SNNTLVASASNDFVIRVWRLPDGL------PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRI 368 (1715)
Q Consensus 295 pDg~lLASGS~DGtIrVWDl~tg~------~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i 368 (1715)
|.+++|+||+.||.|++|++.... .+..+..|...|+.++.+.+++ .|++++.|-+|++|+...+..
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~---tlIS~SsDtTVK~W~~~~~~~---- 107 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK---TLISASSDTTVKVWNAHKDNT---- 107 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC---ceEEecCCceEEEeecccCcc----
Confidence 467789999999999999986432 3677889999999999999987 799999999999999875520
Q ss_pred cCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEE-ccCCCeEEEecCCCeEEEEeCCCCCc--cCCCCCceeeeeec
Q 048801 369 YLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAY-NANGTVFVTGSSDTFARVWSACKSSV--EDSEQPIHELDVLS 445 (1715)
Q Consensus 369 ~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtslaf-SpdG~~LatGs~DG~IrVWDl~t~~~--~~~~~~~~~l~~l~ 445 (1715)
........|...|.|+++ -++..++|+|+-|+.|.|||+.++.. ....... ....+.
T Consensus 108 -------------------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~-t~~sl~ 167 (735)
T KOG0308|consen 108 -------------------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV-TVNSLG 167 (735)
T ss_pred -------------------hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccc-ccccCC
Confidence 112234567889999999 77888999999999999999997621 1111111 122333
Q ss_pred -CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCC
Q 048801 446 -GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVP 524 (1715)
Q Consensus 446 -gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~ 524 (1715)
|+...|.+++.++.+ ..|++|+..+.|++||.++++
T Consensus 168 sG~k~siYSLA~N~t~--------------------------t~ivsGgtek~lr~wDprt~~----------------- 204 (735)
T KOG0308|consen 168 SGPKDSIYSLAMNQTG--------------------------TIIVSGGTEKDLRLWDPRTCK----------------- 204 (735)
T ss_pred CCCccceeeeecCCcc--------------------------eEEEecCcccceEEecccccc-----------------
Confidence 888999999999876 689999999999999999744
Q ss_pred CCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEE
Q 048801 525 PPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAM 604 (1715)
Q Consensus 525 ~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLa 604 (1715)
.+..+.+|...|.++..+.||+.+++++.||+|++||+...+++.++..|...|+++..+| +=..++
T Consensus 205 ------------kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~~vY 271 (735)
T KOG0308|consen 205 ------------KIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SFTHVY 271 (735)
T ss_pred ------------ceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-CcceEE
Confidence 3455679999999999999999999999999999999999999999999999999999998 778899
Q ss_pred EEeCCCcEEEEECCCC-ceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 605 SAGYDGRTIVWDIWEG-TPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 605 Sgs~DGtI~VWDl~tg-k~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
+|+.||.|..=|+.+. ++...+. ...+|..+..+.+...+-+++.|+.|.-|...
T Consensus 272 sG~rd~~i~~Tdl~n~~~~tlick-~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 272 SGGRDGNIYRTDLRNPAKSTLICK-EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred ecCCCCcEEecccCCchhheEeec-CCCchhhhhhccccCCceeeeccccceecCCc
Confidence 9999999999999885 3444443 55677777777655556777788888888753
No 119
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.8e-19 Score=216.08 Aligned_cols=405 Identities=15% Similarity=0.170 Sum_probs=267.6
Q ss_pred CceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 048801 193 DQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHR-DAVYCAIFDRSGRFVITGSDDRLVKIWS 271 (1715)
Q Consensus 193 d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~-~~Vt~VafSpDG~~LaTGS~DGtIrIWD 271 (1715)
..+.++++......++.....+.+- .|......-+...|.||. ..|-+++|+ +|..|++.+.+|.|.-||
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IE--------iwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwD 96 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIE--------IWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWD 96 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEE--------EEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEe
Confidence 3466666665554433332222221 122222334556677775 579999999 555788888999999999
Q ss_pred CCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceE--EEeCCCCCeEEEEecCCCCcceEEEEec
Q 048801 272 METAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS--VLRGHTGAVTAIAFSPRPSAIYQLLSSS 349 (1715)
Q Consensus 272 l~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~--~L~gH~~~VtsLafSPdg~~~~~LaSgS 349 (1715)
+.+++.+..+....+.|++++.+|.+..++.||.||.+...+...+.... .|....+.|.++.|.|++. .|++|+
T Consensus 97 l~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~---~i~~Gs 173 (691)
T KOG2048|consen 97 LHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT---KIAGGS 173 (691)
T ss_pred cccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc---EEEecc
Confidence 99999999999999999999999999999999999988888887765443 3445568999999999986 799999
Q ss_pred CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCC
Q 048801 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 350 ~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~ 429 (1715)
.||.|++||+..+..+..+..... ........-|+++.|..++ .||+|.+.|+|.+||...+
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d-----------------~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g 235 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLD-----------------RLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG 235 (691)
T ss_pred cCceEEEEEcCCCceEEEeeeccc-----------------ccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc
Confidence 999999999998876552211100 0011123448888888665 6899999999999999875
Q ss_pred CccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccC
Q 048801 430 SVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH 509 (1715)
Q Consensus 430 ~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~ 509 (1715)
. .+..+..|...|.+++..++. +++++++.|+.|..+...+...
T Consensus 236 T---------LiqS~~~h~adVl~Lav~~~~--------------------------d~vfsaGvd~~ii~~~~~~~~~- 279 (691)
T KOG2048|consen 236 T---------LIQSHSCHDADVLALAVADNE--------------------------DRVFSAGVDPKIIQYSLTTNKS- 279 (691)
T ss_pred c---------hhhhhhhhhcceeEEEEcCCC--------------------------CeEEEccCCCceEEEEecCCcc-
Confidence 4 466778899999999999875 8999999999999987765432
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEE-----------------
Q 048801 510 GKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVW----------------- 572 (1715)
Q Consensus 510 ~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IW----------------- 572 (1715)
.|.... ....|...|.+++..++ .|++|+.|.++.+-
T Consensus 280 ----~wv~~~--------------------~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p 333 (691)
T KOG2048|consen 280 ----EWVINS--------------------RRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFP 333 (691)
T ss_pred ----ceeeec--------------------cccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhcccccc
Confidence 132211 12334445555555444 44445544444433
Q ss_pred -------------------------ECCCC---------ceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 573 -------------------------NAVDG---------SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 573 -------------------------Dl~sg---------~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
.+.+. .+++........|.+.+.|| ++.+++.+. -..++||.+.
T Consensus 334 ~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st-~~~~~iy~L~ 411 (691)
T KOG2048|consen 334 ASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNLIAIST-VSRTKIYRLQ 411 (691)
T ss_pred ccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCEEEEee-ccceEEEEec
Confidence 22221 01111122334578888899 555555544 1123333221
Q ss_pred C--------------------------------------------------CceEEEEE--cccceEEEEEEcCCCCEEE
Q 048801 619 E--------------------------------------------------GTPIRIYE--IGRFKLVDGKFSPDGTSIV 646 (1715)
Q Consensus 619 t--------------------------------------------------gk~l~tl~--~h~~~V~svafSPDG~~LA 646 (1715)
. ++.+..+. .....|..++.||||++||
T Consensus 412 ~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yia 491 (691)
T KOG2048|consen 412 PDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIA 491 (691)
T ss_pred cCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEE
Confidence 1 01111110 1223578899999999999
Q ss_pred EEeCCCeEEEEECCCCcccccc------ccceeec-CCCccEEEc-CCCCeee
Q 048801 647 LSDDVGQIYLLNTGQGESQKDA------KYDQFFL-GDYRPLIRD-SLGNVLD 691 (1715)
Q Consensus 647 sgs~DG~I~IWdl~tGe~~k~~------~~~~~fs-~D~r~L~~d-~~g~vld 691 (1715)
+.+..|.|++|++.+++..... .....|+ .+...|+.. +++.+..
T Consensus 492 a~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~e 544 (691)
T KOG2048|consen 492 AISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFE 544 (691)
T ss_pred EEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEE
Confidence 9999999999999988754322 2334566 445556654 4444433
No 120
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.87 E-value=1.7e-20 Score=216.37 Aligned_cols=281 Identities=16% Similarity=0.179 Sum_probs=236.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCc
Q 048801 286 GDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS 365 (1715)
Q Consensus 286 ~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l 365 (1715)
..|+++...+....+++|+.|.++.++|...++.+.++.||...|+.+.|+|+.. .+++++.|..|+||.......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~---~v~~aSad~~i~vws~~~~s~- 295 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLD---TVITASADEIIRVWSVPLSSE- 295 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchh---heeecCCcceEEeeccccccC-
Confidence 4788888888878999999999999999999999999999999999999999987 789999999999998754331
Q ss_pred ceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeec
Q 048801 366 PRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS 445 (1715)
Q Consensus 366 ~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~ 445 (1715)
......|...|+.+..+|.|.||++++.||+..+.|++++.. +....
T Consensus 296 ------------------------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~---------lt~vs 342 (506)
T KOG0289|consen 296 ------------------------PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ---------LTVVS 342 (506)
T ss_pred ------------------------ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE---------EEEEe
Confidence 223355788899999999999999999999999999988642 22222
Q ss_pred --CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccC
Q 048801 446 --GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKV 523 (1715)
Q Consensus 446 --gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~ 523 (1715)
...-.+++.+|+|+| -.|.+|..||.|+|||+.++.
T Consensus 343 ~~~s~v~~ts~~fHpDg--------------------------Lifgtgt~d~~vkiwdlks~~---------------- 380 (506)
T KOG0289|consen 343 DETSDVEYTSAAFHPDG--------------------------LIFGTGTPDGVVKIWDLKSQT---------------- 380 (506)
T ss_pred eccccceeEEeeEcCCc--------------------------eEEeccCCCceEEEEEcCCcc----------------
Confidence 223358999999998 589999999999999998633
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecC-CCCeEEEEEccCCCcE
Q 048801 524 PPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH-SASSYVLDVHPFNPRI 602 (1715)
Q Consensus 524 ~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH-~~~V~sLafSP~dg~l 602 (1715)
....+.+|.++|..|+|+.+|-||++++.|+.|++||++..+...++.-. ..+|.++.|.+ .+.+
T Consensus 381 -------------~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~ 446 (506)
T KOG0289|consen 381 -------------NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTY 446 (506)
T ss_pred -------------ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCe
Confidence 34557789999999999999999999999999999999998888877643 34789999998 7788
Q ss_pred EEEEeCCCcEEEEECC--CCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 603 AMSAGYDGRTIVWDIW--EGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 603 LaSgs~DGtI~VWDl~--tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
|+.+|.|=.|++++-. ...++..+..|.+..+.+.|....++|++++.|..++++.+
T Consensus 447 L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 447 LGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 8888777666666532 56788888888888999999999999999999998888764
No 121
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.87 E-value=1.1e-20 Score=220.51 Aligned_cols=265 Identities=23% Similarity=0.343 Sum_probs=210.9
Q ss_pred EcCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC----------cEEEEecCCCCCeEEEEECCC-CCEEEEEeCC
Q 048801 239 LRGHRDAVYCAIFDRSG-RFVITGSDDRLVKIWSMETA----------FCLASCRGHEGDITDLAVSSN-NTLVASASND 306 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG-~~LaTGS~DGtIrIWDl~tg----------k~l~tL~gHs~~VtsLafSpD-g~lLASGS~D 306 (1715)
.--|.+.|+.+.+-|.. .+|||++..+.|.|||..+- .+-.+|.||...-++|+|++. .-.|++|+.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 34699999999999965 46777788999999997532 222378999998889999985 4588999999
Q ss_pred CeeEEEECCCC-------CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccC
Q 048801 307 FVIRVWRLPDG-------LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITG 379 (1715)
Q Consensus 307 GtIrVWDl~tg-------~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g 379 (1715)
++|++||+... .+...+.+|...|..++|++.... +|++++.|+.+.|||++++..
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~--lF~sv~dd~~L~iwD~R~~~~--------------- 262 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED--LFGSVGDDGKLMIWDTRSNTS--------------- 262 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchh--hheeecCCCeEEEEEcCCCCC---------------
Confidence 99999999753 345678899999999999998765 799999999999999986321
Q ss_pred ccCCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEcc
Q 048801 380 KSNVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSG 458 (1715)
Q Consensus 380 ~~~~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafsp 458 (1715)
.+......|...|.|++|+| ++.+||+|+.|++|++||+++.. .++..+.+|...|.+|.|+|
T Consensus 263 --------~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~--------~~lh~~e~H~dev~~V~WSP 326 (422)
T KOG0264|consen 263 --------KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN--------KPLHTFEGHEDEVFQVEWSP 326 (422)
T ss_pred --------CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc--------cCceeccCCCcceEEEEeCC
Confidence 11223345788999999999 56789999999999999998753 46889999999999999999
Q ss_pred CcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCc
Q 048801 459 CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPR 538 (1715)
Q Consensus 459 dg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~ 538 (1715)
.. ...|++++.|+.+.|||+..-. . .
T Consensus 327 h~-------------------------etvLASSg~D~rl~vWDls~ig---~-------------------------e- 352 (422)
T KOG0264|consen 327 HN-------------------------ETVLASSGTDRRLNVWDLSRIG---E-------------------------E- 352 (422)
T ss_pred CC-------------------------CceeEecccCCcEEEEeccccc---c-------------------------c-
Confidence 76 4799999999999999987310 0 0
Q ss_pred ccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 539 QRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 539 ~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
. +++ -..|| -.+++..-.||...|..+.|+|..+..|+|++.|+.+.||...
T Consensus 353 ----------q----~~e------da~dg--------ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 353 ----------Q----SPE------DAEDG--------PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ----------c----Chh------hhccC--------CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 0 000 00111 2345566678999999999999999999999999999999974
No 122
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.87 E-value=1.5e-20 Score=219.47 Aligned_cols=266 Identities=18% Similarity=0.319 Sum_probs=210.4
Q ss_pred CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEE
Q 048801 325 GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCA 404 (1715)
Q Consensus 325 gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsla 404 (1715)
.|.+.|+.+.+.|.... .+++.+..+.|.|||...-.-..... ....+.....+|...-.+++
T Consensus 122 ~h~gEVnRaRymPQnp~--iVAt~t~~~dv~Vfd~tk~~s~~~~~---------------~~~~Pdl~L~gH~~eg~gls 184 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPN--IVATKTSSGDVYVFDYTKHPSKPKAS---------------GECRPDLRLKGHEKEGYGLS 184 (422)
T ss_pred cCCccchhhhhCCCCCc--EEEecCCCCCEEEEEeccCCCccccc---------------ccCCCceEEEeecccccccc
Confidence 49999999999999875 68888999999999986433211110 01122333445566667899
Q ss_pred EccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCc
Q 048801 405 YNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSW 483 (1715)
Q Consensus 405 fSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~ 483 (1715)
|++.. -.|++|+.|+.|++||+...... .........+.+|...|..++|++..
T Consensus 185 Wn~~~~g~Lls~~~d~~i~lwdi~~~~~~--~~~~~p~~~~~~h~~~VeDV~~h~~h----------------------- 239 (422)
T KOG0264|consen 185 WNRQQEGTLLSGSDDHTICLWDINAESKE--DKVVDPKTIFSGHEDVVEDVAWHPLH----------------------- 239 (422)
T ss_pred cccccceeEeeccCCCcEEEEeccccccC--CccccceEEeecCCcceehhhccccc-----------------------
Confidence 99854 47889999999999999764321 22244567889999999999999854
Q ss_pred ccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CCCEEEE
Q 048801 484 FCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVLA 562 (1715)
Q Consensus 484 ~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~LaT 562 (1715)
.+.|++++.|+.+.|||+++.. ..+.....+|.+.|+|++|+| ++..|||
T Consensus 240 --~~lF~sv~dd~~L~iwD~R~~~---------------------------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT 290 (422)
T KOG0264|consen 240 --EDLFGSVGDDGKLMIWDTRSNT---------------------------SKPSHSVKAHSAEVNCVAFNPFNEFILAT 290 (422)
T ss_pred --hhhheeecCCCeEEEEEcCCCC---------------------------CCCcccccccCCceeEEEeCCCCCceEEe
Confidence 4789999999999999999521 223445678999999999999 5567788
Q ss_pred EecCCeEEEEECCCC-ceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC--------------ceEEEEE
Q 048801 563 AIMDCRICVWNAVDG-SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG--------------TPIRIYE 627 (1715)
Q Consensus 563 gs~DGtI~IWDl~sg-~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg--------------k~l~tl~ 627 (1715)
|+.|++|.+||+++. ++++++.+|...|..|.|+|....+||++|.|+++.|||+..- +++..-.
T Consensus 291 ~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~Hg 370 (422)
T KOG0264|consen 291 GSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHG 370 (422)
T ss_pred ccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEec
Confidence 999999999999885 5788999999999999999988899999999999999998631 2345556
Q ss_pred cccceEEEEEEcCCCCEEE-EEeCCCeEEEEECCC
Q 048801 628 IGRFKLVDGKFSPDGTSIV-LSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 628 ~h~~~V~svafSPDG~~LA-sgs~DG~I~IWdl~t 661 (1715)
+|...|.++.|+|...+++ ++.+|+.+.||.+..
T Consensus 371 GH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 371 GHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 7888999999999887655 779999999999863
No 123
>PTZ00420 coronin; Provisional
Probab=99.86 E-value=6e-20 Score=231.87 Aligned_cols=219 Identities=11% Similarity=0.191 Sum_probs=163.7
Q ss_pred cceeEEEEcCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCc--------EEEEecCCCCCeEEEEECCCCCE-EE
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRS-GRFVITGSDDRLVKIWSMETAF--------CLASCRGHEGDITDLAVSSNNTL-VA 301 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpD-G~~LaTGS~DGtIrIWDl~tgk--------~l~tL~gHs~~VtsLafSpDg~l-LA 301 (1715)
....+..|.||.+.|.+++|+|+ +.+||||+.||+|+|||+.++. .+..+.+|...|.+++|+|++.. |+
T Consensus 63 r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLa 142 (568)
T PTZ00420 63 RKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMC 142 (568)
T ss_pred CCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEE
Confidence 34577889999999999999996 7899999999999999997642 34568899999999999999875 57
Q ss_pred EEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCcc
Q 048801 302 SASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKS 381 (1715)
Q Consensus 302 SGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~ 381 (1715)
+|+.|++|+|||+.++..+..+. |...|.+++|+|++. +|++++.|+.|+|||++++..+..+.... ..
T Consensus 143 SgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~---lLat~s~D~~IrIwD~Rsg~~i~tl~gH~--g~----- 211 (568)
T PTZ00420 143 SSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN---LLSGTCVGKHMHIIDPRKQEIASSFHIHD--GG----- 211 (568)
T ss_pred EEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC---EEEEEecCCEEEEEECCCCcEEEEEeccc--CC-----
Confidence 89999999999999998877776 668899999999998 88999999999999999887654432100 00
Q ss_pred CCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC----eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEc
Q 048801 382 NVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT----FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS 457 (1715)
Q Consensus 382 ~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG----~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafs 457 (1715)
.....+....|++++.+|++++.++ .|+|||++... .+.. ...+..+.+.+......
T Consensus 212 -------------~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~-----~pl~-~~~ld~~~~~L~p~~D~ 272 (568)
T PTZ00420 212 -------------KNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT-----SALV-TMSIDNASAPLIPHYDE 272 (568)
T ss_pred -------------ceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC-----CceE-EEEecCCccceEEeeeC
Confidence 0011234456778999999877664 79999998521 1111 11222223333222222
Q ss_pred cCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCC
Q 048801 458 GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 506 (1715)
Q Consensus 458 pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~ 506 (1715)
++ +.++++|+.|+.|++|++..+
T Consensus 273 ~t--------------------------g~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 273 ST--------------------------GLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CC--------------------------CCEEEEEECCCeEEEEEccCC
Confidence 22 368899999999999999753
No 124
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=2.6e-19 Score=210.24 Aligned_cols=276 Identities=11% Similarity=0.056 Sum_probs=200.6
Q ss_pred CCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCC
Q 048801 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDA 376 (1715)
Q Consensus 297 g~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~ 376 (1715)
+.++++++.|+.|++||+.+++.+..+..+. .+.+++|+|++.. .+++++.++.|++||+.+++....+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~--l~~~~~~~~~v~~~d~~~~~~~~~~~~------ 71 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKL--LYVCASDSDTIQVIDLATGEVIGTLPS------ 71 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCE--EEEEECCCCeEEEEECCCCcEEEeccC------
Confidence 3578899999999999999999988888654 4678999999872 346778899999999987764432211
Q ss_pred ccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEe-cCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEE
Q 048801 377 ITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTG-SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQ 455 (1715)
Q Consensus 377 i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatG-s~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLa 455 (1715)
...+..++|+|+++.++++ +.++.|++||+.+.+ .+..+.. ...+.+++
T Consensus 72 --------------------~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~---------~~~~~~~-~~~~~~~~ 121 (300)
T TIGR03866 72 --------------------GPDPELFALHPNGKILYIANEDDNLVTVIDIETRK---------VLAEIPV-GVEPEGMA 121 (300)
T ss_pred --------------------CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCe---------EEeEeeC-CCCcceEE
Confidence 1124578899999877554 568999999997642 2333322 23467899
Q ss_pred EccCcccccccccccccccccccccCCcccCceEEEEcCCC-eEEEEecCCCccCcccccccccccccCCCCCCCCCCCC
Q 048801 456 FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG-SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534 (1715)
Q Consensus 456 fspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG-sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 534 (1715)
|+|++ ..+++++.++ .+.+||..++.....
T Consensus 122 ~~~dg--------------------------~~l~~~~~~~~~~~~~d~~~~~~~~~----------------------- 152 (300)
T TIGR03866 122 VSPDG--------------------------KIVVNTSETTNMAHFIDTKTYEIVDN----------------------- 152 (300)
T ss_pred ECCCC--------------------------CEEEEEecCCCeEEEEeCCCCeEEEE-----------------------
Confidence 99986 6777777665 466778765331110
Q ss_pred CCCcccccCCCCCeeEEEeCCCCCEEEEE-ecCCeEEEEECCCCceEEEEecCCC-------CeEEEEEccCCCcEEEEE
Q 048801 535 GGPRQRLLPTPRGVNMIVWSLDNRFVLAA-IMDCRICVWNAVDGSLVHSLTGHSA-------SSYVLDVHPFNPRIAMSA 606 (1715)
Q Consensus 535 g~~~~~l~~h~~~VtslafSPDG~~LaTg-s~DGtI~IWDl~sg~~l~tL~gH~~-------~V~sLafSP~dg~lLaSg 606 (1715)
. .....+.+++|+++|++|+++ ..++.|++||+.+++.+..+..+.. ....++|+|++..++++.
T Consensus 153 ------~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~ 225 (300)
T TIGR03866 153 ------V-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL 225 (300)
T ss_pred ------E-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc
Confidence 0 011234678999999988655 4689999999999988777653321 234688999555545555
Q ss_pred eCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCcccccc
Q 048801 607 GYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLS-DDVGQIYLLNTGQGESQKDA 668 (1715)
Q Consensus 607 s~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsg-s~DG~I~IWdl~tGe~~k~~ 668 (1715)
+.++.|.+||+.+++.+..+. +...+.+++|+|+|++|+++ ..+|.|.|||+.+++.+...
T Consensus 226 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 226 GPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred CCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 667789999999998887665 34478899999999999886 56899999999998866543
No 125
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=5.2e-20 Score=206.01 Aligned_cols=282 Identities=16% Similarity=0.185 Sum_probs=213.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceE
Q 048801 242 HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS 321 (1715)
Q Consensus 242 H~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~ 321 (1715)
-.+.|+.|.|+|.+..|+.+++||++++|++....+...++ |..++.+++|.+ ...+++|+.||.|+++|+.++....
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCccee
Confidence 36789999999999999999999999999999876666665 999999999986 5578999999999999998887554
Q ss_pred EEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCccee
Q 048801 322 VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQIL 401 (1715)
Q Consensus 322 ~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vt 401 (1715)
+..|..+|.||.+++..+ .+++||+|++|++||.+.......+ .....|.
T Consensus 90 -igth~~~i~ci~~~~~~~---~vIsgsWD~~ik~wD~R~~~~~~~~--------------------------d~~kkVy 139 (323)
T KOG1036|consen 90 -IGTHDEGIRCIEYSYEVG---CVISGSWDKTIKFWDPRNKVVVGTF--------------------------DQGKKVY 139 (323)
T ss_pred -eccCCCceEEEEeeccCC---eEEEcccCccEEEEecccccccccc--------------------------ccCceEE
Confidence 445999999999998766 8999999999999998853222111 1123577
Q ss_pred EEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccC
Q 048801 402 CCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKN 481 (1715)
Q Consensus 402 slafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~ 481 (1715)
|+.. .|+.|++|+.+..+.+||+++..... ...-..-.-.+.||++.|++
T Consensus 140 ~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~-------q~reS~lkyqtR~v~~~pn~--------------------- 189 (323)
T KOG1036|consen 140 CMDV--SGNRLVVGTSDRKVLIYDLRNLDEPF-------QRRESSLKYQTRCVALVPNG--------------------- 189 (323)
T ss_pred EEec--cCCEEEEeecCceEEEEEcccccchh-------hhccccceeEEEEEEEecCC---------------------
Confidence 7766 56789999999999999998754211 11112233468899998865
Q ss_pred CcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEE
Q 048801 482 SWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL 561 (1715)
Q Consensus 482 s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~La 561 (1715)
.-+++++.||.|.+=.++.... ...+.|.++..... ..-...-.+|++|+|+|-...||
T Consensus 190 -----eGy~~sSieGRVavE~~d~s~~-----~~skkyaFkCHr~~-----------~~~~~~~yPVNai~Fhp~~~tfa 248 (323)
T KOG1036|consen 190 -----EGYVVSSIEGRVAVEYFDDSEE-----AQSKKYAFKCHRLS-----------EKDTEIIYPVNAIAFHPIHGTFA 248 (323)
T ss_pred -----CceEEEeecceEEEEccCCchH-----HhhhceeEEeeecc-----------cCCceEEEEeceeEeccccceEE
Confidence 5788999999998866654311 01122222211100 00011124699999999999999
Q ss_pred EEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEe
Q 048801 562 AAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG 607 (1715)
Q Consensus 562 Tgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs 607 (1715)
||+.||.|.+||+.+.+.+..|......|.+++|+. ++..||+|+
T Consensus 249 TgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~-dG~~LAia~ 293 (323)
T KOG1036|consen 249 TGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM-DGSLLAIAS 293 (323)
T ss_pred ecCCCceEEEccCcchhhhhhccCCCCceEEEEecc-CCCeEEEEe
Confidence 999999999999999999999988888899999998 667777765
No 126
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=5.9e-21 Score=222.67 Aligned_cols=245 Identities=20% Similarity=0.311 Sum_probs=202.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC------
Q 048801 242 HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP------ 315 (1715)
Q Consensus 242 H~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~------ 315 (1715)
-.+.|.|++-+|+|.+|+.|+-.|.|++|.+.+|.++..+.+|-..|+|+.|+-||.+|+||+.||.|.+|.+.
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 35789999999999999999899999999999999999999999999999999999999999999999999863
Q ss_pred ---CCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCC
Q 048801 316 ---DGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSS 392 (1715)
Q Consensus 316 ---tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~ 392 (1715)
+-+++..+..|+-+|+.+...+.+... +|+++|.|.++++||+..+.++..+.+|
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~-rl~TaS~D~t~k~wdlS~g~LLlti~fp--------------------- 217 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNA-RLYTASEDRTIKLWDLSLGVLLLTITFP--------------------- 217 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccc-eEEEecCCceEEEEEeccceeeEEEecC---------------------
Confidence 346788999999999999998875443 8999999999999999999888777653
Q ss_pred CCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccc
Q 048801 393 NGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFK 472 (1715)
Q Consensus 393 ~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~ 472 (1715)
..+.+++.+|-+..+.+|+.+|.|.+.++.... +....|..=.++..
T Consensus 218 -----~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~---------------~~~~~v~~k~~~~~------------- 264 (476)
T KOG0646|consen 218 -----SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLS---------------GQSAGVNQKGRHEE------------- 264 (476)
T ss_pred -----CcceeEEEcccccEEEecCCcceEEeeehhcCC---------------cccccccccccccc-------------
Confidence 348999999999999999999999998875421 11111110111111
Q ss_pred ccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCC--CeeE
Q 048801 473 EENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPR--GVNM 550 (1715)
Q Consensus 473 ~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~--~Vts 550 (1715)
+..+..+.+|.+ .|+|
T Consensus 265 --------------------------------------------------------------~t~~~~~~Gh~~~~~ITc 282 (476)
T KOG0646|consen 265 --------------------------------------------------------------NTQINVLVGHENESAITC 282 (476)
T ss_pred --------------------------------------------------------------cceeeeeccccCCcceeE
Confidence 111223445555 8999
Q ss_pred EEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEE
Q 048801 551 IVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIA 603 (1715)
Q Consensus 551 lafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lL 603 (1715)
++++-||.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|.-...+
T Consensus 283 Lais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~ 335 (476)
T KOG0646|consen 283 LAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGII 335 (476)
T ss_pred EEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccccee
Confidence 99999999999999999999999999999999987889999999977544444
No 127
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.86 E-value=6.6e-21 Score=221.45 Aligned_cols=290 Identities=21% Similarity=0.270 Sum_probs=228.9
Q ss_pred CCCCceeeeeeccccCcccccCCCCcccccccccccCccccccc--eeEEEEc--CCCCCeEEEEEcCCCCEEEEEeCCC
Q 048801 190 MQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKM--QNIKKLR--GHRDAVYCAIFDRSGRFVITGSDDR 265 (1715)
Q Consensus 190 ~~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--k~l~~L~--GH~~~Vt~VafSpDG~~LaTGS~DG 265 (1715)
.++-+++.|+..++.+.++..+....+.++.....+.|..-... .++..|. .-..-|.++.+.|||+.|++|+.-.
T Consensus 408 rharq~~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeas 487 (705)
T KOG0639|consen 408 RHARQINTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAS 487 (705)
T ss_pred chHHhhhhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccc
Confidence 45667777777776666666666666665554444444332211 1233332 2356789999999999999999999
Q ss_pred cEEEEeCCCCc--EEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcce
Q 048801 266 LVKIWSMETAF--CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIY 343 (1715)
Q Consensus 266 tIrIWDl~tgk--~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~ 343 (1715)
+|.|||+..-. ....+....-..++++.+||.++.++++.||.|.|||+.+...++.|.||...+.||.++++|.
T Consensus 488 tlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGt--- 564 (705)
T KOG0639|consen 488 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGT--- 564 (705)
T ss_pred eeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCc---
Confidence 99999997543 3344555556778899999999999999999999999999999999999999999999999997
Q ss_pred EEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEE
Q 048801 344 QLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARV 423 (1715)
Q Consensus 344 ~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrV 423 (1715)
.|.+|+-|.+|+.||++.+..+....+ ..+|.++.++|++.+|++|-.++.+.|
T Consensus 565 klWTGGlDntvRcWDlregrqlqqhdF--------------------------~SQIfSLg~cP~~dWlavGMens~vev 618 (705)
T KOG0639|consen 565 KLWTGGLDNTVRCWDLREGRQLQQHDF--------------------------SSQIFSLGYCPTGDWLAVGMENSNVEV 618 (705)
T ss_pred eeecCCCccceeehhhhhhhhhhhhhh--------------------------hhhheecccCCCccceeeecccCcEEE
Confidence 899999999999999998876554322 556999999999999999999999988
Q ss_pred EeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEec
Q 048801 424 WSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIP 503 (1715)
Q Consensus 424 WDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl 503 (1715)
...... ....+..|...|.++.|.++| +.+++.+.|..+..|..
T Consensus 619 lh~skp----------~kyqlhlheScVLSlKFa~cG--------------------------kwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 619 LHTSKP----------EKYQLHLHESCVLSLKFAYCG--------------------------KWFVSTGKDNLLNAWRT 662 (705)
T ss_pred EecCCc----------cceeecccccEEEEEEecccC--------------------------ceeeecCchhhhhhccC
Confidence 887643 345677899999999999987 89999999999999976
Q ss_pred CCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEEC
Q 048801 504 RSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 574 (1715)
Q Consensus 504 ~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl 574 (1715)
.-+..+.. ......|.++.+|.|+++|+||+.|....||.+
T Consensus 663 PyGasiFq------------------------------skE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 663 PYGASIFQ------------------------------SKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccccceee------------------------------ccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 54332111 123457999999999999999999988888864
No 128
>PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors. The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus
Probab=99.86 E-value=5.9e-22 Score=186.44 Aligned_cols=78 Identities=19% Similarity=0.444 Sum_probs=71.8
Q ss_pred cccCceEEEecCCCCCCCceEEehhhHHHHHhCCCCCCcceEEeecccCCCCCceEEEEEEEcccCCC-CCCCCCCceeE
Q 048801 1502 SVLGKAFKLTLPELRDFPDFVVEKTLYDAAISRNWTHRDKCQIWWRNANGEGGTWWKGRITKSQAKSE-EFPNSPWDRYM 1580 (1715)
Q Consensus 1502 ~~~~~~F~v~y~~~~~~~dFlV~~~~y~~a~~~~w~~g~rf~~~~~~e~~~~~~w~~GtI~~~~~~~p-~~P~S~w~~l~ 1580 (1715)
.+++.+|.|+|+||++.+||||++++|++|++.+|++||||||.|+.|+ +.+++|+|||+++++.|| .||+|+||||+
T Consensus 5 a~~~~~F~V~Y~PRa~~sEFVV~~~k~~~al~~~~~~GmRfkM~fE~ed-s~~~~~~GtI~~v~~~dp~~w~~S~WR~Lq 83 (83)
T PF06507_consen 5 AATGSPFEVFYYPRASPSEFVVPASKYDKALNHPWSVGMRFKMRFETED-SSERRWQGTIVGVSDLDPIRWPGSKWRMLQ 83 (83)
T ss_pred hhcCCeEEEEECCCCCCcceEEEHHHHHHHhcCCCCCCcEEEEEeccCC-CccceeeeEEeEeeccCCCCCCCCCcccCc
Confidence 4679999999999999999999999999999999999999999665553 678899999999999999 69999999996
No 129
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.2e-19 Score=202.20 Aligned_cols=291 Identities=20% Similarity=0.308 Sum_probs=214.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeC
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRG 325 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~g 325 (1715)
-.|+.|++-|.+||+|..||.|.|||+.|...-+.+.+|..+|++++||+||+.|+|+|.|..|.+||+..|.++..++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 6899999999999999999999999999999989999999999999999999999999999999999999999999888
Q ss_pred CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEE
Q 048801 326 HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAY 405 (1715)
Q Consensus 326 H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtslaf 405 (1715)
...+|+.+.|+|...+ .+++.-.+..-.+-++..+.. . .++...+ +. .+....+..|
T Consensus 105 f~spv~~~q~hp~k~n--~~va~~~~~sp~vi~~s~~~h--~-~Lp~d~d---~d---------------ln~sas~~~f 161 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRN--KCVATIMEESPVVIDFSDPKH--S-VLPKDDD---GD---------------LNSSASHGVF 161 (405)
T ss_pred ccCccceeeeccccCC--eEEEEEecCCcEEEEecCCce--e-eccCCCc---cc---------------cccccccccc
Confidence 7889999999998764 333333333344444433211 1 1111100 00 0111233478
Q ss_pred ccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCC-CCeeEEEEccCcccccccccccccccccccccCCcc
Q 048801 406 NANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE-NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWF 484 (1715)
Q Consensus 406 SpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~-~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~ 484 (1715)
.+.|+++++|...|.+.+|+..+.+ ++..+.-.. ..|..+.|+-.+
T Consensus 162 dr~g~yIitGtsKGkllv~~a~t~e---------~vas~rits~~~IK~I~~s~~g------------------------ 208 (405)
T KOG1273|consen 162 DRRGKYIITGTSKGKLLVYDAETLE---------CVASFRITSVQAIKQIIVSRKG------------------------ 208 (405)
T ss_pred cCCCCEEEEecCcceEEEEecchhe---------eeeeeeechheeeeEEEEeccC------------------------
Confidence 9999999999999999999998743 344443333 578888888765
Q ss_pred cCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccc--cCCCCCeeEEEeCCCCCEEEE
Q 048801 485 CHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRL--LPTPRGVNMIVWSLDNRFVLA 562 (1715)
Q Consensus 485 ~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l--~~h~~~VtslafSPDG~~LaT 562 (1715)
..|+.-+.|..|+.|++..-...+.-+. ..+...+ .-....-.+++||.+|.|+++
T Consensus 209 --~~liiNtsDRvIR~ye~~di~~~~r~~e--------------------~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a 266 (405)
T KOG1273|consen 209 --RFLIINTSDRVIRTYEISDIDDEGRDGE--------------------VEPEHKLQDVVNKLQWKKCCFSGDGEYVCA 266 (405)
T ss_pred --cEEEEecCCceEEEEehhhhcccCccCC--------------------cChhHHHHHHHhhhhhhheeecCCccEEEe
Confidence 7999999999999998863111110000 0001111 112234567899999999988
Q ss_pred Eec-CCeEEEEECCCCceEEEEecCC-CCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 563 AIM-DCRICVWNAVDGSLVHSLTGHS-ASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 563 gs~-DGtI~IWDl~sg~~l~tL~gH~-~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
|+. -..++||....|.+++.|.|.. .....+.|+| -.-++++- ..|.|+||..
T Consensus 267 ~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 267 GSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred ccccceeEEEEecCCcceeeeecCCchhheeeccccc-ceeeeeec-cCCceEEEEe
Confidence 774 4579999999999999999887 5677899999 44455554 7899999986
No 130
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.85 E-value=3e-19 Score=211.50 Aligned_cols=142 Identities=20% Similarity=0.243 Sum_probs=121.6
Q ss_pred CCCCeeEEEeCC-CCCEEEEEecCCeEEEEECCCC-------ceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEE
Q 048801 544 TPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAVDG-------SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVW 615 (1715)
Q Consensus 544 h~~~VtslafSP-DG~~LaTgs~DGtI~IWDl~sg-------~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VW 615 (1715)
....|+.+.|.| |...||+++.||.|+||.+..+ ++-..+++|...|+++.|||....+|+++++|-+|++|
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence 345689999998 7789999999999999998764 35667899999999999999888999999999999999
Q ss_pred ECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc-ccc-------ccceeecCCCccEEEcC
Q 048801 616 DIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ-KDA-------KYDQFFLGDYRPLIRDS 685 (1715)
Q Consensus 616 Dl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~-k~~-------~~~~~fs~D~r~L~~d~ 685 (1715)
|+.+++....+.+|.+.|.+++|||||+.+|+.+.||.|+||+-.+++.. ... .....|.-|++.++...
T Consensus 706 Dl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~G 783 (1012)
T KOG1445|consen 706 DLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVG 783 (1012)
T ss_pred ehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEec
Confidence 99999999999999999999999999999999999999999998877543 111 12346777888776543
No 131
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=1.2e-19 Score=200.44 Aligned_cols=299 Identities=22% Similarity=0.284 Sum_probs=226.4
Q ss_pred cCCCCCeEEEEECC-CCCEEEEEeCCCeeEEEECCCCCc----------eE-----EEeCCCCCeEEEEecCCCCcceEE
Q 048801 282 RGHEGDITDLAVSS-NNTLVASASNDFVIRVWRLPDGLP----------IS-----VLRGHTGAVTAIAFSPRPSAIYQL 345 (1715)
Q Consensus 282 ~gHs~~VtsLafSp-Dg~lLASGS~DGtIrVWDl~tg~~----------l~-----~L~gH~~~VtsLafSPdg~~~~~L 345 (1715)
+.|.+.|+++.+.+ .|+++++|+.||.|.|||+++... +. .-.+|...|..+.|-|-... .+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG--mF 117 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG--MF 117 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc--ee
Confidence 45889999999987 689999999999999999975421 11 11368889999999997664 78
Q ss_pred EEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC---CCeEEEecCCCeEE
Q 048801 346 LSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN---GTVFVTGSSDTFAR 422 (1715)
Q Consensus 346 aSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd---G~~LatGs~DG~Ir 422 (1715)
.+++.|.++++||.++.+....+.. .+.|.+-+++|- ..++|+|..+-.|+
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~m--------------------------e~~VYshamSp~a~sHcLiA~gtr~~~Vr 171 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKM--------------------------EGKVYSHAMSPMAMSHCLIAAGTRDVQVR 171 (397)
T ss_pred ecccccceEEEeecccceeeEEeec--------------------------CceeehhhcChhhhcceEEEEecCCCcEE
Confidence 9999999999999998876555543 334677777773 35788999999999
Q ss_pred EEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEe
Q 048801 423 VWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWI 502 (1715)
Q Consensus 423 VWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWD 502 (1715)
+-|+..+. ..+.+.||.+.|.++.|+|.. .-.|++|+.||.|++||
T Consensus 172 LCDi~SGs---------~sH~LsGHr~~vlaV~Wsp~~-------------------------e~vLatgsaDg~irlWD 217 (397)
T KOG4283|consen 172 LCDIASGS---------FSHTLSGHRDGVLAVEWSPSS-------------------------EWVLATGSADGAIRLWD 217 (397)
T ss_pred EEeccCCc---------ceeeeccccCceEEEEeccCc-------------------------eeEEEecCCCceEEEEE
Confidence 99998864 467899999999999999975 35889999999999999
Q ss_pred cCCCc-cCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEE
Q 048801 503 PRSRR-SHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVH 581 (1715)
Q Consensus 503 l~t~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~ 581 (1715)
++... +...+.... .........-..|.+.|+.++|+.+|.++++++.|..+++|+..+|+...
T Consensus 218 iRrasgcf~~lD~hn---------------~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 218 IRRASGCFRVLDQHN---------------TKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTL 282 (397)
T ss_pred eecccceeEEeeccc---------------CccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccc
Confidence 98532 110000000 00111222355788999999999999999999999999999998876422
Q ss_pred EEe---cCCCCeEEEEE---ccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEE
Q 048801 582 SLT---GHSASSYVLDV---HPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIY 655 (1715)
Q Consensus 582 tL~---gH~~~V~sLaf---SP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~ 655 (1715)
.-. .|... ..+++ +- +...++---.++.+.++++-+|..++.+.+|-..|.+.+|-|+=+.+.+++.|+.|+
T Consensus 283 ~~~g~~~~n~~-~~~~~~~~~~-~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~ 360 (397)
T KOG4283|consen 283 REFGPIIHNQT-TSFAVHIQSM-DSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIY 360 (397)
T ss_pred ccccccccccc-ccceEEEeec-ccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccc
Confidence 111 11111 11111 12 223344445668999999999999999999988899999999999999999999999
Q ss_pred EEEC
Q 048801 656 LLNT 659 (1715)
Q Consensus 656 IWdl 659 (1715)
.|-.
T Consensus 361 ~w~p 364 (397)
T KOG4283|consen 361 MWSP 364 (397)
T ss_pred cccc
Confidence 9986
No 132
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3.1e-19 Score=199.04 Aligned_cols=308 Identities=16% Similarity=0.190 Sum_probs=216.4
Q ss_pred EEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCce--EEE--eCCCCCeEEEEecCCCCcceEEEEecCCCcE
Q 048801 279 ASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPI--SVL--RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354 (1715)
Q Consensus 279 ~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l--~~L--~gH~~~VtsLafSPdg~~~~~LaSgS~DGtV 354 (1715)
..|++|.+.|++++|+.||++||+++.|++|+||++.+.... +.+ .-.-+-.+.++|.||-.. .++++-...+|
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s--~vv~~~~g~~l 157 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKS--VVVSVKRGNKL 157 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcce--EEEEEccCCEE
Confidence 457899999999999999999999999999999999764211 111 111234688999999875 56666677789
Q ss_pred EEEecCCCCCcceecCCCCCCCccCccCCCC-CCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccC
Q 048801 355 RIWDARYSQYSPRIYLPKPPDAITGKSNVPS-NNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVED 433 (1715)
Q Consensus 355 rIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~-~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~ 433 (1715)
++|.+...+. |...... ..........|...|..+-...++.+|++++.|..|.+|++. ++
T Consensus 158 ~vyk~~K~~d--------------G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq--- 219 (420)
T KOG2096|consen 158 CVYKLVKKTD--------------GSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ--- 219 (420)
T ss_pred EEEEeeeccc--------------CCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc---
Confidence 9997653221 0000000 000011223345557777777888999999999999999997 32
Q ss_pred CCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccc
Q 048801 434 SEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVG 513 (1715)
Q Consensus 434 ~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~ 513 (1715)
.+..+......-...+.+|+| .+|++++---.|++|.+--++ -+
T Consensus 220 ------~L~~idtnq~~n~~aavSP~G--------------------------RFia~~gFTpDVkVwE~~f~k----dG 263 (420)
T KOG2096|consen 220 ------LLQSIDTNQSSNYDAAVSPDG--------------------------RFIAVSGFTPDVKVWEPIFTK----DG 263 (420)
T ss_pred ------eeeeeccccccccceeeCCCC--------------------------cEEEEecCCCCceEEEEEecc----Cc
Confidence 244444444455667889987 789999999999999764211 11
Q ss_pred cccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC-------CceEEEE---
Q 048801 514 RWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD-------GSLVHSL--- 583 (1715)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s-------g~~l~tL--- 583 (1715)
.+. .......+.+|...|..++||++...+++.+.||+++|||+.- .+.+++.
T Consensus 264 ~fq-----------------ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~p 326 (420)
T KOG2096|consen 264 TFQ-----------------EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAP 326 (420)
T ss_pred chh-----------------hhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcc
Confidence 111 1123456789999999999999999999999999999999842 2233322
Q ss_pred -ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE-cccceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 584 -TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE-IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 584 -~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~-~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
....+.-..|+++| .+..|+. +....++++..++|+....+. .|...|.+++|++||+++|++++ ..++++.-..
T Consensus 327 l~aag~~p~RL~lsP-~g~~lA~-s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd-r~vrv~~ntp 403 (420)
T KOG2096|consen 327 LHAAGSEPVRLELSP-SGDSLAV-SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD-RYVRVIRNTP 403 (420)
T ss_pred hhhcCCCceEEEeCC-CCcEEEe-ecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc-eeeeeecCCC
Confidence 12233334899999 6666654 345579999999998777665 46778999999999999999876 6777776333
Q ss_pred C
Q 048801 662 G 662 (1715)
Q Consensus 662 G 662 (1715)
|
T Consensus 404 g 404 (420)
T KOG2096|consen 404 G 404 (420)
T ss_pred c
Confidence 3
No 133
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=1.1e-19 Score=217.55 Aligned_cols=313 Identities=19% Similarity=0.254 Sum_probs=215.5
Q ss_pred EEEcC---CCCEEEEEeCCCcEEEEeCCCCcE------EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCc
Q 048801 249 AIFDR---SGRFVITGSDDRLVKIWSMETAFC------LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLP 319 (1715)
Q Consensus 249 VafSp---DG~~LaTGS~DGtIrIWDl~tgk~------l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~ 319 (1715)
+.|++ ....||.+..||.|.++|...... +.....|.+.|.++.|-|....|++++.|.++++||+.++++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 44554 345789999999999999865432 345567999999999999778899999999999999999988
Q ss_pred eEE--EeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCC-C----CCCCCCCC
Q 048801 320 ISV--LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNV-P----SNNGPSSS 392 (1715)
Q Consensus 320 l~~--L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~-~----~~~~~~~~ 392 (1715)
+.. +.||.+.|.+++|.|.+.. .|++|+.||.|.|||++-...-.. .. ....+.+.... + ........
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n~~--vF~tGgRDg~illWD~R~n~~d~~-e~--~~~~~~~~~n~~ptpskp~~kr~~k 209 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTNPA--VFCTGGRDGEILLWDCRCNGVDAL-EE--FDNRIYGRHNTAPTPSKPLKKRIRK 209 (720)
T ss_pred ecceeecccccccchhhhccCCCc--ceeeccCCCcEEEEEEeccchhhH-HH--HhhhhhccccCCCCCCchhhccccc
Confidence 776 8899999999999999875 799999999999999975441100 00 00000000000 0 00111222
Q ss_pred CCCCCcceeE---EEEccCCCeEEEecC-CCeEEEEeCCCCCccCCCCCceeeeeecCC---CCCeeEEEEccCcccccc
Q 048801 393 NGLQSHQILC---CAYNANGTVFVTGSS-DTFARVWSACKSSVEDSEQPIHELDVLSGH---ENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 393 ~~~h~~~Vts---lafSpdG~~LatGs~-DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH---~~~V~sLafspdg~as~~ 465 (1715)
...+...|.+ +.+..|...||+++. |+.|+|||+++.......++... ..+..| .-.+.++.....|
T Consensus 210 ~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~-~~~~t~skrs~G~~nL~lDssG----- 283 (720)
T KOG0321|consen 210 WKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS-DKYPTHSKRSVGQVNLILDSSG----- 283 (720)
T ss_pred cccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcc-cCccCcccceeeeEEEEecCCC-----
Confidence 2334444444 555667788888887 99999999998765443333221 222223 2234455544433
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~ 545 (1715)
.+|.+.+.|+.|.+|++.+... .++..+.++.
T Consensus 284 ---------------------t~L~AsCtD~sIy~ynm~s~s~---------------------------sP~~~~sg~~ 315 (720)
T KOG0321|consen 284 ---------------------TYLFASCTDNSIYFYNMRSLSI---------------------------SPVAEFSGKL 315 (720)
T ss_pred ---------------------CeEEEEecCCcEEEEeccccCc---------------------------CchhhccCcc
Confidence 4554444599999999986321 1111122221
Q ss_pred C--CeeEEEeCCCCCEEEEEecCCeEEEEECCCCce-EEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC
Q 048801 546 R--GVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL-VHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG 620 (1715)
Q Consensus 546 ~--~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~-l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg 620 (1715)
. ....-..+||+.+|++|+.|..+++|.+.+.+. ...+.||.-.|++++|.|..-.-+++++.|-+++||++..+
T Consensus 316 ~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 316 NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 1 122335789999999999999999999988654 55678999999999999866666788899999999999654
No 134
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=4.7e-19 Score=198.20 Aligned_cols=264 Identities=16% Similarity=0.212 Sum_probs=209.0
Q ss_pred EEEEeCCCeeEEEECCC------------CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcce
Q 048801 300 VASASNDFVIRVWRLPD------------GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPR 367 (1715)
Q Consensus 300 LASGS~DGtIrVWDl~t------------g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~ 367 (1715)
|++|+....|.-+++.- ..++..+..|.+.|++++.+. . ++++|+.|-+|+|||+.....+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~--~---~~aSGssDetI~IYDm~k~~qlg~ 78 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSG--P---YVASGSSDETIHIYDMRKRKQLGI 78 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecc--e---eEeccCCCCcEEEEeccchhhhcc
Confidence 56666666666555431 123556678999999999975 3 899999999999999987654433
Q ss_pred ecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCC--eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeec
Q 048801 368 IYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT--VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS 445 (1715)
Q Consensus 368 i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~--~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~ 445 (1715)
+ ..|.+.|+++.|.+.-. .|++|+.||.|.+|+... ..++..+.
T Consensus 79 l-------------------------l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~---------W~~~~slK 124 (362)
T KOG0294|consen 79 L-------------------------LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS---------WELLKSLK 124 (362)
T ss_pred e-------------------------eccccceEEEEecCCcchhheeeecCCCcEEEEEcCC---------eEEeeeec
Confidence 2 33577799999998765 899999999999999965 56789999
Q ss_pred CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCC
Q 048801 446 GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPP 525 (1715)
Q Consensus 446 gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~ 525 (1715)
+|.+.|+.|+.+|.+ .+-++.+.|+.+++||+-.++.-..
T Consensus 125 ~H~~~Vt~lsiHPS~--------------------------KLALsVg~D~~lr~WNLV~Gr~a~v-------------- 164 (362)
T KOG0294|consen 125 AHKGQVTDLSIHPSG--------------------------KLALSVGGDQVLRTWNLVRGRVAFV-------------- 164 (362)
T ss_pred ccccccceeEecCCC--------------------------ceEEEEcCCceeeeehhhcCcccee--------------
Confidence 999999999999986 7888999999999999987552111
Q ss_pred CCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEE
Q 048801 526 PPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMS 605 (1715)
Q Consensus 526 ~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaS 605 (1715)
..-...-+.+.|+|.|.+++.++.+ .|-||.+.+......+... ..+.++.| .++..|++
T Consensus 165 ----------------~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~--l~~~~L~v 224 (362)
T KOG0294|consen 165 ----------------LNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATF--LDGSELLV 224 (362)
T ss_pred ----------------eccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeee--cCCceEEE
Confidence 1111123348999999988888765 6889998887666555433 34556666 35678889
Q ss_pred EeCCCcEEEEECCCCceEEEEEcccceEEEEEE--cCCCCEEEEEeCCCeEEEEECCCC
Q 048801 606 AGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKF--SPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 606 gs~DGtI~VWDl~tgk~l~tl~~h~~~V~svaf--SPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
|+.|+.|.+||..++.++..+.+|...|-++.+ .|++.+|++++.||.|.|||+...
T Consensus 225 G~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 225 GGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 999999999999999999999999999998874 578999999999999999999765
No 135
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.84 E-value=9.7e-20 Score=211.84 Aligned_cols=282 Identities=15% Similarity=0.186 Sum_probs=229.8
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC---CceEEEeC--CCCCeEEEEecCCCCcceEEEEecCCCcEEEE
Q 048801 283 GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG---LPISVLRG--HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW 357 (1715)
Q Consensus 283 gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg---~~l~~L~g--H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIW 357 (1715)
.|..-|.++++|...+.++||+. |.|+|||+... .++..|.. ....|.++..+|++. .|++|+.-.+|.||
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr---tLivGGeastlsiW 492 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR---TLIVGGEASTLSIW 492 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc---eEEeccccceeeee
Confidence 38888999999999999999976 68999999643 44555543 356789999999998 89999999999999
Q ss_pred ecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCC
Q 048801 358 DARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQP 437 (1715)
Q Consensus 358 Dl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~ 437 (1715)
|+.......... .....-....++.+||.++.++++.||.|.|||+.+.
T Consensus 493 DLAapTprikae-----------------------ltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-------- 541 (705)
T KOG0639|consen 493 DLAAPTPRIKAE-----------------------LTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-------- 541 (705)
T ss_pred eccCCCcchhhh-----------------------cCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc--------
Confidence 997543211110 0111233677899999999999999999999999874
Q ss_pred ceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccc
Q 048801 438 IHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTR 517 (1715)
Q Consensus 438 ~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~ 517 (1715)
..++.+.+|.+.+.||.++++| ..|.||+-|.+|+.||++.++....
T Consensus 542 -~~VrqfqGhtDGascIdis~dG--------------------------tklWTGGlDntvRcWDlregrqlqq------ 588 (705)
T KOG0639|consen 542 -TLVRQFQGHTDGASCIDISKDG--------------------------TKLWTGGLDNTVRCWDLREGRQLQQ------ 588 (705)
T ss_pred -eeeecccCCCCCceeEEecCCC--------------------------ceeecCCCccceeehhhhhhhhhhh------
Confidence 4578899999999999999987 7999999999999999997542211
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEcc
Q 048801 518 AYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHP 597 (1715)
Q Consensus 518 ~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP 597 (1715)
......|.++.++|.+.+|++|-.++.|.|... ++.....+.-|..-|.++.|.+
T Consensus 589 ------------------------hdF~SQIfSLg~cP~~dWlavGMens~vevlh~-skp~kyqlhlheScVLSlKFa~ 643 (705)
T KOG0639|consen 589 ------------------------HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT-SKPEKYQLHLHESCVLSLKFAY 643 (705)
T ss_pred ------------------------hhhhhhheecccCCCccceeeecccCcEEEEec-CCccceeecccccEEEEEEecc
Confidence 112346888999999999999999999988876 4445566778999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 598 FNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 598 ~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
-++++++.|.|+.+..|..--|..+.... ....|.++.+|-|.++|++|+.|....||.+
T Consensus 644 -cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 644 -CGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -cCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 77888999999999999998888776665 5678999999999999999999988888875
No 136
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=4.8e-19 Score=197.48 Aligned_cols=286 Identities=20% Similarity=0.302 Sum_probs=208.6
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC----CcEEEEecCCCCCeEEEEECC--CCCEEEEEeCCCeeEEEE
Q 048801 240 RGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET----AFCLASCRGHEGDITDLAVSS--NNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 240 ~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~t----gk~l~tL~gHs~~VtsLafSp--Dg~lLASGS~DGtIrVWD 313 (1715)
.+|.+-|.|+.|+..|+.+|||+.|++|+|||... -.+....+.|.+.|..|.|.+ -|+.||+++.|++|.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 48999999999999999999999999999999643 356677889999999999976 589999999999999997
Q ss_pred CCC---------CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCC
Q 048801 314 LPD---------GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384 (1715)
Q Consensus 314 l~t---------g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~ 384 (1715)
=.. .....++....+.|+.+.|.|..... .|++++.||+||||+.-....+....+......
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGL-klA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~-------- 160 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGL-KLAAASADGILRIYEAPDPMNLSQWTLQHEIQN-------- 160 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcce-EEEEeccCcEEEEEecCCccccccchhhhhhhh--------
Confidence 421 12345666778899999999986554 899999999999998765444333332221111
Q ss_pred CCCCCCCCCCCCCcceeEEEEccC---CCeEEEecCC-----CeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEE
Q 048801 385 SNNGPSSSNGLQSHQILCCAYNAN---GTVFVTGSSD-----TFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF 456 (1715)
Q Consensus 385 ~~~~~~~~~~~h~~~VtslafSpd---G~~LatGs~D-----G~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLaf 456 (1715)
.......+.....|+.|++. ..+||+|+.+ +.+.||..... ......+..+.+|..+|+.|+|
T Consensus 161 ----~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~-----~rKw~kva~L~d~~dpI~di~w 231 (361)
T KOG2445|consen 161 ----VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNEN-----GRKWLKVAELPDHTDPIRDISW 231 (361)
T ss_pred ----ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCC-----cceeeeehhcCCCCCcceeeee
Confidence 11122334556789999974 3678888765 47889887543 2234566778899999999999
Q ss_pred ccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCC
Q 048801 457 SGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGG 536 (1715)
Q Consensus 457 spdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~ 536 (1715)
.|+.. .....|++++.|| |+||.+......-. . .....+.........
T Consensus 232 APn~G----------------------r~y~~lAvA~kDg-v~I~~v~~~~s~i~--------~-ee~~~~~~~~~l~v~ 279 (361)
T KOG2445|consen 232 APNIG----------------------RSYHLLAVATKDG-VRIFKVKVARSAIE--------E-EEVLAPDLMTDLPVE 279 (361)
T ss_pred ccccC----------------------CceeeEEEeecCc-EEEEEEeeccchhh--------h-hcccCCCCccccceE
Confidence 99741 0136899999999 99999874221000 0 000000011112223
Q ss_pred CcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECC
Q 048801 537 PRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV 575 (1715)
Q Consensus 537 ~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~ 575 (1715)
.+..+..|.+.|..+.|+-.|..|++.+.||.|++|...
T Consensus 280 ~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 280 KVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 445577899999999999999999999999999999763
No 137
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=5.9e-19 Score=219.03 Aligned_cols=284 Identities=18% Similarity=0.242 Sum_probs=223.1
Q ss_pred cCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC-CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecC
Q 048801 282 RGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG-LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360 (1715)
Q Consensus 282 ~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg-~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~ 360 (1715)
..|....+.|+|.|+|.+|++++.||.|++|+.... ..-.++..+...|.+++.... +|++|+.+++|.+|.+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~-----~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN-----HFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc-----ceEEeeccceEEEeeCC
Confidence 368899999999999999999999999999987655 333444447778888877554 79999999999999988
Q ss_pred CCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCcee
Q 048801 361 YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHE 440 (1715)
Q Consensus 361 tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~ 440 (1715)
.++.-..+ ....-++++++|+.+|.++|.|+.|-.|++.++.+.. .
T Consensus 85 s~~~~~iL-------------------------~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s---------~ 130 (933)
T KOG1274|consen 85 SGEEDTIL-------------------------ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS---------Q 130 (933)
T ss_pred CCCcccee-------------------------eeeeccceEEEEecCCcEEEeecCceeEEEEeccccc---------h
Confidence 76532111 1124458999999999999999999999999997643 3
Q ss_pred eeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccccccc
Q 048801 441 LDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYH 520 (1715)
Q Consensus 441 l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~ 520 (1715)
...+.+|.++|.+|.|+|.+ .+||+.+.||.|+||++.++.+............
T Consensus 131 ~~~lrgh~apVl~l~~~p~~--------------------------~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~ 184 (933)
T KOG1274|consen 131 EKVLRGHDAPVLQLSYDPKG--------------------------NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE 184 (933)
T ss_pred heeecccCCceeeeeEcCCC--------------------------CEEEEEecCceEEEEEcccchhhhhcccCCcccc
Confidence 56789999999999999987 8999999999999999998664433322111100
Q ss_pred ccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec--CCCCeEEEEEccC
Q 048801 521 LKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG--HSASSYVLDVHPF 598 (1715)
Q Consensus 521 l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g--H~~~V~sLafSP~ 598 (1715)
......+..++|+|+|..+++.+.|+.|.+|+..++.....|.. +...+.++.|+|
T Consensus 185 ---------------------~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP- 242 (933)
T KOG1274|consen 185 ---------------------FILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP- 242 (933)
T ss_pred ---------------------ccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-
Confidence 00134577899999988888899999999999999999888864 444589999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEE
Q 048801 599 NPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYL 656 (1715)
Q Consensus 599 dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~I 656 (1715)
.|.+||+++.||.|.|||+.+... .-....|.+++|-|++..|-....-|...+
T Consensus 243 nG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 243 NGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGV 296 (933)
T ss_pred CCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeecccccc
Confidence 689999999999999999987322 112457999999999987766555444433
No 138
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=5.6e-20 Score=224.14 Aligned_cols=285 Identities=18% Similarity=0.291 Sum_probs=219.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----cEEEEecCCC---CCeEEEEECC-CCCEEEEEeCCCeeEEEECCC-
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETA----FCLASCRGHE---GDITDLAVSS-NNTLVASASNDFVIRVWRLPD- 316 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg----k~l~tL~gHs---~~VtsLafSp-Dg~lLASGS~DGtIrVWDl~t- 316 (1715)
..+|...++-..|+.++. ..++|+.+... ++...+++.. -.+.++.|.. +.++||+++..|.|.+||+..
T Consensus 42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~ 120 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKS 120 (839)
T ss_pred cceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcc
Confidence 445666788888888875 47888876532 2222222211 1345667764 568999999999999999986
Q ss_pred --CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 317 --GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 317 --g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
.+.+..|..|...|+++.|++...+ +|++|+.||+|++||++......++ .
T Consensus 121 ~rnk~l~~f~EH~Rs~~~ldfh~tep~--iliSGSQDg~vK~~DlR~~~S~~t~-------------------------~ 173 (839)
T KOG0269|consen 121 IRNKLLTVFNEHERSANKLDFHSTEPN--ILISGSQDGTVKCWDLRSKKSKSTF-------------------------R 173 (839)
T ss_pred ccchhhhHhhhhccceeeeeeccCCcc--EEEecCCCceEEEEeeecccccccc-------------------------c
Confidence 5667788899999999999998775 8999999999999999876543332 1
Q ss_pred CCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccc
Q 048801 395 LQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKE 473 (1715)
Q Consensus 395 ~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~ 473 (1715)
.....|..+.|+| .+..|+++...|.+++||++. +..+...+.+|.++|.|+.|+|+.
T Consensus 174 ~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRq--------p~r~~~k~~AH~GpV~c~nwhPnr------------- 232 (839)
T KOG0269|consen 174 SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQ--------PDRCEKKLTAHNGPVLCLNWHPNR------------- 232 (839)
T ss_pred ccchhhhceeeccCCCceEEEecCCceEEEeeccC--------chhHHHHhhcccCceEEEeecCCC-------------
Confidence 2356699999999 578999999999999999975 456677889999999999999975
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEe
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW 553 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtslaf 553 (1715)
.+||||+.|+.|+||+..+.+... ........+|.+|.|
T Consensus 233 -------------~~lATGGRDK~vkiWd~t~~~~~~----------------------------~~tInTiapv~rVkW 271 (839)
T KOG0269|consen 233 -------------EWLATGGRDKMVKIWDMTDSRAKP----------------------------KHTINTIAPVGRVKW 271 (839)
T ss_pred -------------ceeeecCCCccEEEEeccCCCccc----------------------------eeEEeecceeeeeee
Confidence 799999999999999998643111 112233567999999
Q ss_pred CCCCCE-EEEEe--cCCeEEEEECCCCc-eEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC
Q 048801 554 SLDNRF-VLAAI--MDCRICVWNAVDGS-LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG 620 (1715)
Q Consensus 554 SPDG~~-LaTgs--~DGtI~IWDl~sg~-~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg 620 (1715)
-|...+ |++++ .|-.|+|||++..- +..++..|...++.++|-..+...+.+++.||+|..-.++++
T Consensus 272 RP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 272 RPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 998765 45544 47789999997654 567889999999999997766788999999998876655443
No 139
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=4.9e-19 Score=195.63 Aligned_cols=302 Identities=21% Similarity=0.325 Sum_probs=227.3
Q ss_pred EcCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCc-------EEE--------EecCCCCCeEEEEECC-CCCEEE
Q 048801 239 LRGHRDAVYCAIFDR-SGRFVITGSDDRLVKIWSMETAF-------CLA--------SCRGHEGDITDLAVSS-NNTLVA 301 (1715)
Q Consensus 239 L~GH~~~Vt~VafSp-DG~~LaTGS~DGtIrIWDl~tgk-------~l~--------tL~gHs~~VtsLafSp-Dg~lLA 301 (1715)
.+.|.+.|+++.+.+ .|+|+++|+.||.|.|||++... ... .-.+|.-.|.++.|-| |..++.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 457999999999987 68999999999999999997542 111 1136888999999999 667888
Q ss_pred EEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCcc
Q 048801 302 SASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKS 381 (1715)
Q Consensus 302 SGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~ 381 (1715)
+++.|.+++|||..+.+....|. -.+.|++-+++|-...-.++++|..|-.|++-|+.+|.+...
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~-------------- 183 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT-------------- 183 (397)
T ss_pred cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee--------------
Confidence 99999999999999988777776 678899999999765445788888999999999998876443
Q ss_pred CCCCCCCCCCCCCCCCcceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCc----cCCC--CCceeeeeecCCCCCeeEE
Q 048801 382 NVPSNNGPSSSNGLQSHQILCCAYNANGT-VFVTGSSDTFARVWSACKSSV----EDSE--QPIHELDVLSGHENDVNYV 454 (1715)
Q Consensus 382 ~~~~~~~~~~~~~~h~~~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~----~~~~--~~~~~l~~l~gH~~~V~sL 454 (1715)
..+|...|.++.|+|... .|++|+.||.|++||++.... .+.. .....+..-..|.+.|+.+
T Consensus 184 -----------LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngl 252 (397)
T KOG4283|consen 184 -----------LSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGL 252 (397)
T ss_pred -----------eccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeee
Confidence 356788999999999776 578999999999999986421 0001 1112233456788999999
Q ss_pred EEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCC
Q 048801 455 QFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534 (1715)
Q Consensus 455 afspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 534 (1715)
+|..++ .++++++.|..+++|+..+++.... .+
T Consensus 253 a~tSd~--------------------------~~l~~~gtd~r~r~wn~~~G~ntl~--~~------------------- 285 (397)
T KOG4283|consen 253 AWTSDA--------------------------RYLASCGTDDRIRVWNMESGRNTLR--EF------------------- 285 (397)
T ss_pred eecccc--------------------------hhhhhccCccceEEeecccCccccc--cc-------------------
Confidence 999887 7999999999999999887652110 00
Q ss_pred CCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEE
Q 048801 535 GGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIV 614 (1715)
Q Consensus 535 g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~V 614 (1715)
+..... ....-.+. +. +.+...++.--.++.+.++++-.|..+..+.+|...|.|.++-| +-....+|..|+.|..
T Consensus 286 g~~~~n-~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~-~fq~~~tg~~d~ni~~ 361 (397)
T KOG4283|consen 286 GPIIHN-QTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRP-DFEQCFTGDMNGNIYM 361 (397)
T ss_pred cccccc-ccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecC-chhhhhccccCCcccc
Confidence 000000 00011121 22 33444444444568999999999999999999988999999988 5556778999999999
Q ss_pred EEC
Q 048801 615 WDI 617 (1715)
Q Consensus 615 WDl 617 (1715)
|-.
T Consensus 362 w~p 364 (397)
T KOG4283|consen 362 WSP 364 (397)
T ss_pred ccc
Confidence 976
No 140
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=3.6e-19 Score=207.03 Aligned_cols=307 Identities=20% Similarity=0.267 Sum_probs=234.1
Q ss_pred EeCCCCcEEEEecCCCCCeEEEEECCCC--CEEEEEeCCCeeEEEECCCC----CceEEEeCCCCCeEEEEecCCCCcce
Q 048801 270 WSMETAFCLASCRGHEGDITDLAVSSNN--TLVASASNDFVIRVWRLPDG----LPISVLRGHTGAVTAIAFSPRPSAIY 343 (1715)
Q Consensus 270 WDl~tgk~l~tL~gHs~~VtsLafSpDg--~lLASGS~DGtIrVWDl~tg----~~l~~L~gH~~~VtsLafSPdg~~~~ 343 (1715)
.++.+-......+-+.+.|++++|+|.. ++||+|+.-|+|-+||+.+. .-+..+..|.++|.+|.|+|.+..
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s-- 248 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS-- 248 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh--
Confidence 4455555666777789999999999954 68999999999999999532 345677889999999999998875
Q ss_pred EEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEE
Q 048801 344 QLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARV 423 (1715)
Q Consensus 344 ~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrV 423 (1715)
.+++.+.||+|++-|+..+.....+... .....+..+.|+.+...++.|..=|...+
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~~-----------------------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~ 305 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNISEEVLSLD-----------------------TDNIWFSSLDFSAESRSVLFGDNVGNFNV 305 (498)
T ss_pred heeeeccCceeeeeeecchhhHHHhhcC-----------------------ccceeeeeccccCCCccEEEeecccceEE
Confidence 7999999999999999876543222211 11334677888888888888887789999
Q ss_pred EeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEec
Q 048801 424 WSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIP 503 (1715)
Q Consensus 424 WDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl 503 (1715)
||+++.. .....+.-|...|+.++++|.. +.+|+|++.|++++|||+
T Consensus 306 iD~R~~~--------s~~~~~~lh~kKI~sv~~NP~~-------------------------p~~laT~s~D~T~kIWD~ 352 (498)
T KOG4328|consen 306 IDLRTDG--------SEYENLRLHKKKITSVALNPVC-------------------------PWFLATASLDQTAKIWDL 352 (498)
T ss_pred EEeecCC--------ccchhhhhhhcccceeecCCCC-------------------------chheeecccCcceeeeeh
Confidence 9998763 3345566788899999999964 579999999999999999
Q ss_pred CCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECC----CCce
Q 048801 504 RSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV----DGSL 579 (1715)
Q Consensus 504 ~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~----sg~~ 579 (1715)
+.-... ..+......|...|.+..|||.|..|+|.+.|..|+|||.. .-.+
T Consensus 353 R~l~~K-------------------------~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p 407 (498)
T KOG4328|consen 353 RQLRGK-------------------------ASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEP 407 (498)
T ss_pred hhhcCC-------------------------CCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCc
Confidence 852200 01245567899999999999999889999999999999983 2333
Q ss_pred EEEEecCCC------CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccc-eEEE-EEEcCCCCEEE-EEeC
Q 048801 580 VHSLTGHSA------SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRF-KLVD-GKFSPDGTSIV-LSDD 650 (1715)
Q Consensus 580 l~tL~gH~~------~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~-~V~s-vafSPDG~~LA-sgs~ 650 (1715)
+.++. |.. .....+|.| +..++++|-+-..|-|+|-..++.+..+..... .|.+ ..|+|-+..++ .++.
T Consensus 408 ~~~I~-Hn~~t~RwlT~fKA~W~P-~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s 485 (498)
T KOG4328|consen 408 LGTIP-HNNRTGRWLTPFKAAWDP-DYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNS 485 (498)
T ss_pred cceee-ccCcccccccchhheeCC-CccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCc
Confidence 33332 221 234457999 778999999999999999988887877654333 4554 48999988555 5567
Q ss_pred CCeEEEEECCC
Q 048801 651 VGQIYLLNTGQ 661 (1715)
Q Consensus 651 DG~I~IWdl~t 661 (1715)
.|.|+||....
T Consensus 486 ~Gki~vft~k~ 496 (498)
T KOG4328|consen 486 SGKIYVFTNKK 496 (498)
T ss_pred cceEEEEecCC
Confidence 89999997543
No 141
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.83 E-value=2.2e-18 Score=205.11 Aligned_cols=396 Identities=13% Similarity=0.155 Sum_probs=266.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe
Q 048801 245 AVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR 324 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~ 324 (1715)
.|+.++|-|||..|+.+.. ..+.|||...|..++++++|...|+|++|+.||+.+|+|+.|..|.||.-.-...+ ..
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY- 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY- 90 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-ee-
Confidence 8999999999998888754 57999999999999999999999999999999999999999999999985422222 22
Q ss_pred CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEE
Q 048801 325 GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCA 404 (1715)
Q Consensus 325 gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsla 404 (1715)
.|...|.|+.|+|-.. .|++++.. ..-+|.......... .....|.+++
T Consensus 91 SH~D~IQCMsFNP~~h---~LasCsLs-dFglWS~~qK~V~K~---------------------------kss~R~~~Cs 139 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITH---QLASCSLS-DFGLWSPEQKSVSKH---------------------------KSSSRIICCS 139 (1081)
T ss_pred ccCCeeeEeecCchHH---Hhhhcchh-hccccChhhhhHHhh---------------------------hhheeEEEee
Confidence 5999999999999876 67777654 366887654332111 1134589999
Q ss_pred EccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccc-------------
Q 048801 405 YNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAF------------- 471 (1715)
Q Consensus 405 fSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~------------- 471 (1715)
|..||++|+.|-.+|+|.|-+... .+...+....|.+.+|.+++|+|........+....
T Consensus 140 WtnDGqylalG~~nGTIsiRNk~g-------Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG 212 (1081)
T KOG1538|consen 140 WTNDGQYLALGMFNGTISIRNKNG-------EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG 212 (1081)
T ss_pred ecCCCcEEEEeccCceEEeecCCC-------CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc
Confidence 999999999999999999885532 223334555667889999999987532221111100
Q ss_pred -------cccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCC
Q 048801 472 -------KEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPT 544 (1715)
Q Consensus 472 -------~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h 544 (1715)
....-|-+...+..+.+++.|+.|+.+.+|.-.. -. ..++-..
T Consensus 213 ~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G-vr-----------------------------LGTvg~~ 262 (1081)
T KOG1538|consen 213 KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG-VR-----------------------------LGTVGEQ 262 (1081)
T ss_pred eeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecC-eE-----------------------------Eeecccc
Confidence 0111122223345678999999999999984331 11 1122234
Q ss_pred CCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCc----------------------------------------------
Q 048801 545 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS---------------------------------------------- 578 (1715)
Q Consensus 545 ~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~---------------------------------------------- 578 (1715)
...|..++..|++++++.|+.||+|-.|++...+
T Consensus 263 D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnr 342 (1081)
T KOG1538|consen 263 DSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNR 342 (1081)
T ss_pred ceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhh
Confidence 5679999999999999999999999999874211
Q ss_pred -------eE--EEEe----------------------------cC-----CCCeEEEEEc--------------------
Q 048801 579 -------LV--HSLT----------------------------GH-----SASSYVLDVH-------------------- 596 (1715)
Q Consensus 579 -------~l--~tL~----------------------------gH-----~~~V~sLafS-------------------- 596 (1715)
.+ ..+. +| .....|+.|.
T Consensus 343 LAVQLpeki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~ReW~M~S~iRYikV~G 422 (1081)
T KOG1538|consen 343 LAVQLPEKILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKEREWQMESLIRYIKVIG 422 (1081)
T ss_pred heecccceEEEEeccccccccchhHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhhhhhhHHHHHHhhhhhc
Confidence 00 0000 00 0111222221
Q ss_pred -cCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc--cccccee
Q 048801 597 -PFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK--DAKYDQF 673 (1715)
Q Consensus 597 -P~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k--~~~~~~~ 673 (1715)
|-+..-|+.|-.+|.|.-.=+.+.-++-.. .....|.|+.++..-+.||+.++.++..++|+.+++..- ...+++.
T Consensus 423 GP~gREgL~vGlknGqV~kiF~dN~~PiLl~-~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL~QEpg~nSV~ 501 (1081)
T KOG1538|consen 423 GPPGREGLLVGLKNGQVLKIFVDNLFPILLL-KQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQEPGANSVA 501 (1081)
T ss_pred CCCCcceeEEEecCCcEEEEEecCCchhhee-cccceeEEeeccCCcceEEEEccCCeEEEEEccCCceEeecCCCceEE
Confidence 112223333444443322112222222212 134578899999999999999999999999999998764 3346777
Q ss_pred ecCCCc-cEEEcCCCCeeecccccccCcCCCCCcccCCCC
Q 048801 674 FLGDYR-PLIRDSLGNVLDQETQLVPHRRNIQDPLCDSSM 712 (1715)
Q Consensus 674 fs~D~r-~L~~d~~g~vld~~tq~~p~~~~~~~~lvD~~~ 712 (1715)
|.+... .|+++++|+.--....+++|...++.+.+..-+
T Consensus 502 wNT~~E~MlcfT~~g~L~VR~~~~P~h~qk~~G~VvG~~g 541 (1081)
T KOG1538|consen 502 WNTQCEDMLCFTGGGYLNVRASTFPVHRQKLQGFVVGYNG 541 (1081)
T ss_pred eeccccceEEEecCCceEEEeccCCcchhcceEEEEEecC
Confidence 776654 566787777666667777777666666555433
No 142
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=6.5e-19 Score=209.32 Aligned_cols=287 Identities=16% Similarity=0.230 Sum_probs=220.4
Q ss_pred eeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCC--EEEEEeCCCeeEE
Q 048801 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT--LVASASNDFVIRV 311 (1715)
Q Consensus 234 k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~--lLASGS~DGtIrV 311 (1715)
.+-..++||++.|.||..+|.|.+||+|+.||+|+||.+.||+|+.++. ..+.|.||+|+|.+. +||++-... +.|
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~i 468 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLI 468 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEE
Confidence 3556789999999999999999999999999999999999999999987 566899999999653 455543332 333
Q ss_pred EECCCC-------------------------------------CceEEEeCCCCCeEEEEecCCCCcceEEEEecC---C
Q 048801 312 WRLPDG-------------------------------------LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD---D 351 (1715)
Q Consensus 312 WDl~tg-------------------------------------~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~---D 351 (1715)
-+..-| .-++..-.|...|..|.|+..|. ||++... .
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD---YlatV~~~~~~ 545 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD---YLATVMPDSGN 545 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc---eEEEeccCCCc
Confidence 332111 01223335888999999999998 6776544 4
Q ss_pred CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCc
Q 048801 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSV 431 (1715)
Q Consensus 352 GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~ 431 (1715)
..|.|+++........+ ....+.|.++.|+|...+|++++. ..|+|||+....
T Consensus 546 ~~VliHQLSK~~sQ~PF-------------------------~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqe- 598 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPF-------------------------RKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQE- 598 (733)
T ss_pred ceEEEEecccccccCch-------------------------hhcCCceeEEEecCCCceEEEEec-cceEEEehhHHH-
Confidence 56888888654422111 122455999999999998888875 789999997632
Q ss_pred cCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcc
Q 048801 432 EDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGK 511 (1715)
Q Consensus 432 ~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~ 511 (1715)
.+..+......|..++.+|.| +.|+.|+.|+.+..+|+.-.
T Consensus 599 --------lvKkL~tg~kwiS~msihp~G--------------------------Dnli~gs~d~k~~WfDldls----- 639 (733)
T KOG0650|consen 599 --------LVKKLLTGSKWISSMSIHPNG--------------------------DNLILGSYDKKMCWFDLDLS----- 639 (733)
T ss_pred --------HHHHHhcCCeeeeeeeecCCC--------------------------CeEEEecCCCeeEEEEcccC-----
Confidence 244445555688999999987 89999999999999998742
Q ss_pred cccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC---------CceEEE
Q 048801 512 VGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD---------GSLVHS 582 (1715)
Q Consensus 512 ~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s---------g~~l~t 582 (1715)
..+.+++..|...++.++|++.-.++++|+.||++.|+--.- --++..
T Consensus 640 -----------------------skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~ 696 (733)
T KOG0650|consen 640 -----------------------SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR 696 (733)
T ss_pred -----------------------cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence 235567778999999999999999999999999999985321 124677
Q ss_pred EecCCCC----eEEEEEccCCCcEEEEEeCCCcEEEE
Q 048801 583 LTGHSAS----SYVLDVHPFNPRIAMSAGYDGRTIVW 615 (1715)
Q Consensus 583 L~gH~~~----V~sLafSP~dg~lLaSgs~DGtI~VW 615 (1715)
|.+|... |..+.||| ..-+|+++|.||+|++|
T Consensus 697 L~gH~~~~~~gVLd~~wHP-~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 697 LRGHEKTNDLGVLDTIWHP-RQPWLFSAGADGTIRLF 732 (733)
T ss_pred ccCceeecccceEeecccC-CCceEEecCCCceEEee
Confidence 8898655 88889999 66678899999999998
No 143
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=4.9e-19 Score=210.37 Aligned_cols=312 Identities=14% Similarity=0.205 Sum_probs=227.3
Q ss_pred EEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEE
Q 048801 277 CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356 (1715)
Q Consensus 277 ~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrI 356 (1715)
+...++||++.|.||...|.|.+||+|+.||+|+||.+.+|.+++++. ..+.|.||+|+|.+... .|+++- ...+.|
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~-vLAvA~-~~~~~i 468 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLC-VLAVAV-GECVLI 468 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCce-eEEEEe-cCceEE
Confidence 445678999999999999999999999999999999999999999887 56789999999998753 444444 344666
Q ss_pred EecCCCCCcce-----ecCCCCCCCcc----CccCCC---CCCCCCCCCCCCCcceeEEEEccCCCeEEEecC---CCeE
Q 048801 357 WDARYSQYSPR-----IYLPKPPDAIT----GKSNVP---SNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS---DTFA 421 (1715)
Q Consensus 357 WDl~tg~~l~~-----i~~~~~~~~i~----g~~~~~---~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~---DG~I 421 (1715)
.+..-|..+.. +....+..... ..+.-. ...........|...|..+.|+..|.+|++... ...|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 66554421111 00000000000 000000 000112234456778999999999999998765 3578
Q ss_pred EEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEE
Q 048801 422 RVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIW 501 (1715)
Q Consensus 422 rVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIW 501 (1715)
.|+++..... ...+....+.|.++.|+|.. .+|++++ ...|+||
T Consensus 549 liHQLSK~~s---------Q~PF~kskG~vq~v~FHPs~--------------------------p~lfVaT-q~~vRiY 592 (733)
T KOG0650|consen 549 LIHQLSKRKS---------QSPFRKSKGLVQRVKFHPSK--------------------------PYLFVAT-QRSVRIY 592 (733)
T ss_pred EEEecccccc---------cCchhhcCCceeEEEecCCC--------------------------ceEEEEe-ccceEEE
Confidence 8999976432 23344456789999999964 3444443 5689999
Q ss_pred ecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCC-ceE
Q 048801 502 IPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG-SLV 580 (1715)
Q Consensus 502 Dl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg-~~l 580 (1715)
|+..+. .+..+......|..++++|.|..|++|+.|+.++.+|+.-. ++.
T Consensus 593 dL~kqe-----------------------------lvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPy 643 (733)
T KOG0650|consen 593 DLSKQE-----------------------------LVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPY 643 (733)
T ss_pred ehhHHH-----------------------------HHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchh
Confidence 987533 22334445567899999999999999999999999999654 677
Q ss_pred EEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC------CC---ceEEEEEcccce----EEEEEEcCCCCEEEE
Q 048801 581 HSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW------EG---TPIRIYEIGRFK----LVDGKFSPDGTSIVL 647 (1715)
Q Consensus 581 ~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~------tg---k~l~tl~~h~~~----V~svafSPDG~~LAs 647 (1715)
+++.-|...|++|+||+ .--++++|+.||++.|+.-. .. -++..+.+|... |.++.|+|...+|++
T Consensus 644 k~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfs 722 (733)
T KOG0650|consen 644 KTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFS 722 (733)
T ss_pred HHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEe
Confidence 88899999999999998 66789999999999998532 11 245667776544 889999999999999
Q ss_pred EeCCCeEEEE
Q 048801 648 SDDVGQIYLL 657 (1715)
Q Consensus 648 gs~DG~I~IW 657 (1715)
++.||.|++|
T Consensus 723 AGAd~tirlf 732 (733)
T KOG0650|consen 723 AGADGTIRLF 732 (733)
T ss_pred cCCCceEEee
Confidence 9999999998
No 144
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.2e-20 Score=228.22 Aligned_cols=256 Identities=19% Similarity=0.328 Sum_probs=217.4
Q ss_pred CEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCc
Q 048801 298 TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAI 377 (1715)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i 377 (1715)
.+++.+..+-.++||+... +..|...|.++..-..+. .+++|+.|..+-+|.+.....+
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r---~~~~Gg~~~k~~L~~i~kp~~i------------ 63 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSR---SLVTGGEDEKVNLWAIGKPNAI------------ 63 (825)
T ss_pred cccceeeeeeccccccchh------hhhhhhhhceeeeeccce---eeccCCCceeeccccccCCchh------------
Confidence 3445555566677887543 445888888888755544 7899999999999987533221
Q ss_pred cCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEc
Q 048801 378 TGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS 457 (1715)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafs 457 (1715)
....+|...|.|+.|++...+|++|+.+|+|++||+... +.+++|.+|...+.+|.|+
T Consensus 64 -------------~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA---------k~vrtLtgh~~~~~sv~f~ 121 (825)
T KOG0267|consen 64 -------------TSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA---------KIVRTLTGHLLNITSVDFH 121 (825)
T ss_pred -------------heeeccCCcceeeecCcchhhhcccccCCceeeeehhhh---------hhhhhhhccccCcceeeec
Confidence 124567889999999999999999999999999999864 4577999999999999999
Q ss_pred cCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCC
Q 048801 458 GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP 537 (1715)
Q Consensus 458 pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 537 (1715)
|-+ .++++|+.|+.+.+||++. .++
T Consensus 122 P~~--------------------------~~~a~gStdtd~~iwD~Rk-----------------------------~Gc 146 (825)
T KOG0267|consen 122 PYG--------------------------EFFASGSTDTDLKIWDIRK-----------------------------KGC 146 (825)
T ss_pred cce--------------------------EEeccccccccceehhhhc-----------------------------cCc
Confidence 976 6789999999999999983 244
Q ss_pred cccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 538 RQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 538 ~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
...+.+|...|.++.|+|+|++++.|+.|.+|+|||+..|+.+..|.+|.+.|.++.|+| ...++++|+.|++|++||+
T Consensus 147 ~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dl 225 (825)
T KOG0267|consen 147 SHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDL 225 (825)
T ss_pred eeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCc-hhhhhccCCCCceeeeecc
Confidence 556667888999999999999999999999999999999999999999999999999999 7789999999999999999
Q ss_pred CCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCC
Q 048801 618 WEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVG 652 (1715)
Q Consensus 618 ~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG 652 (1715)
.+.+.+.........|.+++|+|+|..+++|....
T Consensus 226 etfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 226 ETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 99998888887788999999999999998886643
No 145
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.82 E-value=1.1e-18 Score=194.31 Aligned_cols=282 Identities=14% Similarity=0.191 Sum_probs=209.4
Q ss_pred CCCCCceeeeeeccccCcccccCCCCcccccccccccCccccccc-e-eEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 048801 189 HMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKM-Q-NIKKLRGHRDAVYCAIFDRSGRFVITGSDDRL 266 (1715)
Q Consensus 189 ~~~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-k-~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGt 266 (1715)
..+.|.|..|+|++.. ...++++.|+..+..|.++.. . .-+....|.++|.+++|+.||..+++|+.|+.
T Consensus 24 ~pP~DsIS~l~FSP~~--------~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~ 95 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQA--------DNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQ 95 (347)
T ss_pred CCcccchheeEecccc--------CceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCc
Confidence 3456888999998722 233445556655555555441 1 22455679999999999999999999999999
Q ss_pred EEEEeCCCCcEEEEecCCCCCeEEEEECCCCC--EEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceE
Q 048801 267 VKIWSMETAFCLASCRGHEGDITDLAVSSNNT--LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQ 344 (1715)
Q Consensus 267 IrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~--lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~ 344 (1715)
+++||+.+++ +..+..|.++|.++.|-+... .|+|||+|++|+.||.+...++.++. -...|+++..-.. .
T Consensus 96 ~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~~p-----m 168 (347)
T KOG0647|consen 96 AKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVLYP-----M 168 (347)
T ss_pred eEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhccCc-----e
Confidence 9999999994 466677999999999987655 89999999999999999999998887 5677888776543 7
Q ss_pred EEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEE
Q 048801 345 LLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVW 424 (1715)
Q Consensus 345 LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVW 424 (1715)
++.+..+..|.+|++..+...... ....-..+++|++...+....+.|+-+|.+.|.
T Consensus 169 ~vVata~r~i~vynL~n~~te~k~-----------------------~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq 225 (347)
T KOG0647|consen 169 AVVATAERHIAVYNLENPPTEFKR-----------------------IESPLKWQTRCVACFQDKDGFALGSIEGRVAIQ 225 (347)
T ss_pred eEEEecCCcEEEEEcCCCcchhhh-----------------------hcCcccceeeEEEEEecCCceEeeeecceEEEE
Confidence 888889999999999765422110 011125568999999999889999999999999
Q ss_pred eCCCCCccCCCCCceeeeeecCC---CCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEE
Q 048801 425 SACKSSVEDSEQPIHELDVLSGH---ENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIW 501 (1715)
Q Consensus 425 Dl~t~~~~~~~~~~~~l~~l~gH---~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIW 501 (1715)
.+..+.. ...-..++.+.-..- --.|++|+|+|. +..|+|++.||++.+|
T Consensus 226 ~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~--------------------------hgtlvTaGsDGtf~FW 278 (347)
T KOG0647|consen 226 YIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPV--------------------------HGTLVTAGSDGTFSFW 278 (347)
T ss_pred ecCCCCc-cCceeEEEeccCCCCCCceEEecceEeecc--------------------------cceEEEecCCceEEEe
Confidence 9976432 111112222211111 125888999995 4799999999999999
Q ss_pred ecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe
Q 048801 502 IPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI 564 (1715)
Q Consensus 502 Dl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs 564 (1715)
|-+.+. .+.....+..+|+|.+|+.+|.++|-+.
T Consensus 279 Dkdar~-----------------------------kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 279 DKDART-----------------------------KLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred cchhhh-----------------------------hhhccCcCCCccceeEecCCCCEEEEEe
Confidence 977532 2233455788999999999999988654
No 146
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=8.2e-19 Score=204.10 Aligned_cols=288 Identities=11% Similarity=0.167 Sum_probs=225.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC--CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCC
Q 048801 284 HEGDITDLAVSSNNTLVASASNDFVIRVWRLPD--GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY 361 (1715)
Q Consensus 284 Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t--g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~t 361 (1715)
..+.|++|.|+|...+|++|+.|++++||.++. ...+..+.-...+|.+.+|.|+|.. .+++++....++.||+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~--~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHS--VIFTSGRRKYLYSYDLET 289 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCce--EEEecccceEEEEeeccc
Confidence 356899999999999999999999999998853 3456666666789999999999874 789999999999999988
Q ss_pred CCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceee
Q 048801 362 SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHEL 441 (1715)
Q Consensus 362 g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l 441 (1715)
.+..+.-... | .....+....+++++++|+..+..|.|.+....++.. +
T Consensus 290 ak~~k~~~~~-------g---------------~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el---------i 338 (514)
T KOG2055|consen 290 AKVTKLKPPY-------G---------------VEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL---------I 338 (514)
T ss_pred cccccccCCC-------C---------------cccchhheeEecCCCCeEEEcccCceEEeehhhhhhh---------h
Confidence 7754321110 0 0123467888999999999999999999999877542 2
Q ss_pred eeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccc
Q 048801 442 DVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHL 521 (1715)
Q Consensus 442 ~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l 521 (1715)
..+. -.+.|..++|+.++ ..|++++.+|.|.+||++...+.... ..
T Consensus 339 ~s~K-ieG~v~~~~fsSds--------------------------k~l~~~~~~GeV~v~nl~~~~~~~rf---~D---- 384 (514)
T KOG2055|consen 339 TSFK-IEGVVSDFTFSSDS--------------------------KELLASGGTGEVYVWNLRQNSCLHRF---VD---- 384 (514)
T ss_pred heee-eccEEeeEEEecCC--------------------------cEEEEEcCCceEEEEecCCcceEEEE---ee----
Confidence 2222 35688999999776 78888889999999999975322211 00
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC------CceEEEEecCCCCeEEEEE
Q 048801 522 KVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD------GSLVHSLTGHSASSYVLDV 595 (1715)
Q Consensus 522 ~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s------g~~l~tL~gH~~~V~sLaf 595 (1715)
...-.-+.+|.|++|.|||+|+..|.|.|||..+ .+++..+..-...|++|.|
T Consensus 385 ---------------------~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~F 443 (514)
T KOG2055|consen 385 ---------------------DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQF 443 (514)
T ss_pred ---------------------cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeee
Confidence 0011235688899999999999999999999654 5677777777788999999
Q ss_pred ccCCCcEEEEEe--CCCcEEEEECCCCceEEEEEccc---ceEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 596 HPFNPRIAMSAG--YDGRTIVWDIWEGTPIRIYEIGR---FKLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 596 SP~dg~lLaSgs--~DGtI~VWDl~tgk~l~tl~~h~---~~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
++ +..+||.++ .+..+++-.+.+......+.... +.|+|++|||.|.+||+|..+|.+.+|.+.
T Consensus 444 n~-d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 444 NH-DAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred Cc-chhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 99 777877765 56789999998877776665433 358899999999999999999999999874
No 147
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.2e-18 Score=202.60 Aligned_cols=287 Identities=10% Similarity=0.140 Sum_probs=227.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCcEEEEecCCCCCeEEEEECCCCC-EEEEEeCCCeeEEEECCCCCc
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSME--TAFCLASCRGHEGDITDLAVSSNNT-LVASASNDFVIRVWRLPDGLP 319 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~--tgk~l~tL~gHs~~VtsLafSpDg~-lLASGS~DGtIrVWDl~tg~~ 319 (1715)
.+.|+||.|+|.-..|++|+.||+++||.++ +...++.+.--..+|.+.+|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4689999999999999999999999999886 3356677766788999999999998 899999999999999988764
Q ss_pred e--EEEeCCC-CCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCC
Q 048801 320 I--SVLRGHT-GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396 (1715)
Q Consensus 320 l--~~L~gH~-~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h 396 (1715)
. ..+.++. ..+....++++++ +|+..|..|.|.+....+++++..+..
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~---fia~~G~~G~I~lLhakT~eli~s~Ki-------------------------- 343 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSN---FIAIAGNNGHIHLLHAKTKELITSFKI-------------------------- 343 (514)
T ss_pred ccccCCCCcccchhheeEecCCCC---eEEEcccCceEEeehhhhhhhhheeee--------------------------
Confidence 3 3334444 3466778899998 899999999999999999988776654
Q ss_pred CcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCe--eEEEEccCccccccccccccccc
Q 048801 397 SHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDV--NYVQFSGCAVASRSAMSDAFKEE 474 (1715)
Q Consensus 397 ~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V--~sLafspdg~as~~~~~~~~~~~ 474 (1715)
.+.|..++|+.+|+.|++.+.+|.|.+||++... ++..+.. .+.| ++++.+.++
T Consensus 344 eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~---------~~~rf~D-~G~v~gts~~~S~ng-------------- 399 (514)
T KOG2055|consen 344 EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNS---------CLHRFVD-DGSVHGTSLCISLNG-------------- 399 (514)
T ss_pred ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcc---------eEEEEee-cCccceeeeeecCCC--------------
Confidence 4458999999999999999999999999998743 3333332 2222 445555654
Q ss_pred ccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC
Q 048801 475 NVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS 554 (1715)
Q Consensus 475 ~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS 554 (1715)
.+|++|+..|.|.|||..+.. ......++..+..-...|+.++|+
T Consensus 400 ------------~ylA~GS~~GiVNIYd~~s~~-----------------------~s~~PkPik~~dNLtt~Itsl~Fn 444 (514)
T KOG2055|consen 400 ------------SYLATGSDSGIVNIYDGNSCF-----------------------ASTNPKPIKTVDNLTTAITSLQFN 444 (514)
T ss_pred ------------ceEEeccCcceEEEeccchhh-----------------------ccCCCCchhhhhhhheeeeeeeeC
Confidence 799999999999999977522 111234556666667789999999
Q ss_pred CCCCEEEEEec--CCeEEEEECCCCceEEEEec---CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 555 LDNRFVLAAIM--DCRICVWNAVDGSLVHSLTG---HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 555 PDG~~LaTgs~--DGtI~IWDl~sg~~l~tL~g---H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
+|+++||.++. ...+++-.+.+......+.. .-+.|+||+|+| ++.+||.|..+|.|.+|.+.
T Consensus 445 ~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP-~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 445 HDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP-NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC-CCceEEeecCCCceeeEeec
Confidence 99999998875 56788888877666555543 335689999999 77788999999999999874
No 148
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.82 E-value=3.5e-20 Score=225.72 Aligned_cols=274 Identities=18% Similarity=0.260 Sum_probs=199.5
Q ss_pred cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEE
Q 048801 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVr 355 (1715)
+.+..|.||.++|+|+.|...|.+|++|+.|..|+||..+++.++..+.||.+.|+.++.+.++. .+++++.|..|+
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~---~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNT---MIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhh---hhhhcccCceEE
Confidence 44556789999999999999999999999999999999999999999999999999999998876 789999999999
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCC
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSE 435 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~ 435 (1715)
+|.+.++..+.. ..+|.+.|++++|+|-. +.+.||++++||.+-.......
T Consensus 258 vWrl~~~~pvsv-------------------------LrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~p 308 (1113)
T KOG0644|consen 258 VWRLPDGAPVSV-------------------------LRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVP 308 (1113)
T ss_pred EEecCCCchHHH-------------------------HhccccceeeeccCccc----cCCCCCceEeccccccccccCC
Confidence 999987764433 35678889999999965 6678999999998721100000
Q ss_pred CCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccc
Q 048801 436 QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRW 515 (1715)
Q Consensus 436 ~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~ 515 (1715)
.| ... ....-+.++.|...+ ..++|++.|+....|.+.
T Consensus 309 rp---~~~--~~~~~~~s~~~~~~~--------------------------~~f~Tgs~d~ea~n~e~~----------- 346 (1113)
T KOG0644|consen 309 RP---LKF--TEKDLVDSILFENNG--------------------------DRFLTGSRDGEARNHEFE----------- 346 (1113)
T ss_pred CC---CCc--ccccceeeeeccccc--------------------------cccccccCCcccccchhh-----------
Confidence 00 000 011233333333332 455566665555555322
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEE
Q 048801 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDV 595 (1715)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLaf 595 (1715)
+++|...+-.+++++.
T Consensus 347 ----------------------------------~l~~~~~~lif~t~ss------------------------------ 362 (1113)
T KOG0644|consen 347 ----------------------------------QLAWRSNLLIFVTRSS------------------------------ 362 (1113)
T ss_pred ----------------------------------HhhhhccceEEEeccc------------------------------
Confidence 1222222222222222
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCcccccc------
Q 048801 596 HPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIV-LSDDVGQIYLLNTGQGESQKDA------ 668 (1715)
Q Consensus 596 SP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LA-sgs~DG~I~IWdl~tGe~~k~~------ 668 (1715)
+-..+.+++-.+..+++|++.+|..++.+.+|...+..+.|+|-...++ +++.||.+.|||+..|..++..
T Consensus 363 --d~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~k 440 (1113)
T KOG0644|consen 363 --DLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGK 440 (1113)
T ss_pred --cccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccce
Confidence 1224556677788899999999999999999999999999999887777 8899999999999999776432
Q ss_pred ccceeecCCCccEEEc-CCCCe
Q 048801 669 KYDQFFLGDYRPLIRD-SLGNV 689 (1715)
Q Consensus 669 ~~~~~fs~D~r~L~~d-~~g~v 689 (1715)
..+..|++||..++.. .+|..
T Consensus 441 l~d~kFSqdgts~~lsd~hgql 462 (1113)
T KOG0644|consen 441 LVDGKFSQDGTSIALSDDHGQL 462 (1113)
T ss_pred eeccccCCCCceEecCCCCCce
Confidence 2345799999988864 44554
No 149
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=2.2e-20 Score=225.96 Aligned_cols=239 Identities=23% Similarity=0.393 Sum_probs=207.0
Q ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC
Q 048801 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD 316 (1715)
Q Consensus 237 ~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t 316 (1715)
+.+..|...|.|+..-..++.+++|+.|..+-+|.+..-..+..|.+|..+|.+|.|+++..+|++|+.+|+|+|||++.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 34668999999999988899999999999999999988778888999999999999999999999999999999999999
Q ss_pred CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCC
Q 048801 317 GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396 (1715)
Q Consensus 317 g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h 396 (1715)
++.+++|.||...+..+.|+|-+. ++++|+.|+.+.+||++...+...+ ..|
T Consensus 102 Ak~vrtLtgh~~~~~sv~f~P~~~---~~a~gStdtd~~iwD~Rk~Gc~~~~-------------------------~s~ 153 (825)
T KOG0267|consen 102 AKIVRTLTGHLLNITSVDFHPYGE---FFASGSTDTDLKIWDIRKKGCSHTY-------------------------KSH 153 (825)
T ss_pred hhhhhhhhccccCcceeeeccceE---EeccccccccceehhhhccCceeee-------------------------cCC
Confidence 999999999999999999999987 7899999999999999855443332 335
Q ss_pred CcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccc
Q 048801 397 SHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENV 476 (1715)
Q Consensus 397 ~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~ 476 (1715)
...|.++.|+|+|++++.|+.|..++|||+..++ .+..+..|.+.|.++.|+|..
T Consensus 154 ~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk---------~~~ef~~~e~~v~sle~hp~e---------------- 208 (825)
T KOG0267|consen 154 TRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK---------LSKEFKSHEGKVQSLEFHPLE---------------- 208 (825)
T ss_pred cceeEEEeecCCCceeeccCCcceeeeecccccc---------cccccccccccccccccCchh----------------
Confidence 6679999999999999999999999999998754 367788999999999999864
Q ss_pred ccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC
Q 048801 477 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD 556 (1715)
Q Consensus 477 ~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD 556 (1715)
-.+++|+.|+++++||+++-..+.. ......+|.+++|+|+
T Consensus 209 ----------~Lla~Gs~d~tv~f~dletfe~I~s-----------------------------~~~~~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 209 ----------VLLAPGSSDRTVRFWDLETFEVISS-----------------------------GKPETDGVRSLAFNPD 249 (825)
T ss_pred ----------hhhccCCCCceeeeeccceeEEeec-----------------------------cCCccCCceeeeecCC
Confidence 4788999999999999986332211 1223567999999999
Q ss_pred CCEEEEEecCC
Q 048801 557 NRFVLAAIMDC 567 (1715)
Q Consensus 557 G~~LaTgs~DG 567 (1715)
+..+++|....
T Consensus 250 ~~~~~~G~q~s 260 (825)
T KOG0267|consen 250 GKIVLSGEQIS 260 (825)
T ss_pred ceeeecCchhh
Confidence 99999887654
No 150
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=2.6e-19 Score=194.15 Aligned_cols=255 Identities=20% Similarity=0.241 Sum_probs=202.8
Q ss_pred eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEE
Q 048801 324 RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCC 403 (1715)
Q Consensus 324 ~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsl 403 (1715)
..|...|..+...--+. .|++++.|++|+|+.++.+... .....+.+|.++|+.+
T Consensus 8 t~H~D~IHda~lDyygk---rlATcsSD~tVkIf~v~~n~~s----------------------~ll~~L~Gh~GPVwqv 62 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGK---RLATCSSDGTVKIFEVRNNGQS----------------------KLLAELTGHSGPVWKV 62 (299)
T ss_pred hhhhhhhhHhhhhhhcc---eeeeecCCccEEEEEEcCCCCc----------------------eeeeEecCCCCCeeEE
Confidence 46888888877766666 8999999999999998765431 1223356789999999
Q ss_pred EEcc--CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccC
Q 048801 404 AYNA--NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKN 481 (1715)
Q Consensus 404 afSp--dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~ 481 (1715)
+|.. -|.+||+++.||.|.||.-.++. .........|...|++++|.|..+
T Consensus 63 ~wahPk~G~iLAScsYDgkVIiWke~~g~-------w~k~~e~~~h~~SVNsV~waphey-------------------- 115 (299)
T KOG1332|consen 63 AWAHPKFGTILASCSYDGKVIIWKEENGR-------WTKAYEHAAHSASVNSVAWAPHEY-------------------- 115 (299)
T ss_pred eecccccCcEeeEeecCceEEEEecCCCc-------hhhhhhhhhhcccceeeccccccc--------------------
Confidence 9976 79999999999999999987653 445667789999999999999863
Q ss_pred CcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC---C-
Q 048801 482 SWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD---N- 557 (1715)
Q Consensus 482 s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD---G- 557 (1715)
+-.|++++.||.|.|.++++. +.|. .......|.-+|++++|.|- |
T Consensus 116 ----gl~LacasSDG~vsvl~~~~~------g~w~--------------------t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 116 ----GLLLACASSDGKVSVLTYDSS------GGWT--------------------TSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ----ceEEEEeeCCCcEEEEEEcCC------CCcc--------------------chhhhhccccccceeeecCcCCCcc
Confidence 358999999999999988752 1111 11234568889999999985 5
Q ss_pred ----------CEEEEEecCCeEEEEECCCCc--eEEEEecCCCCeEEEEEccCCC---cEEEEEeCCCcEEEEECCCC--
Q 048801 558 ----------RFVLAAIMDCRICVWNAVDGS--LVHSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTIVWDIWEG-- 620 (1715)
Q Consensus 558 ----------~~LaTgs~DGtI~IWDl~sg~--~l~tL~gH~~~V~sLafSP~dg---~lLaSgs~DGtI~VWDl~tg-- 620 (1715)
+.|++|+.|..|+||+..++. .-.+|.+|.+.|+.++|.|.-+ ..||+++.||+|.||.....
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 569999999999999998863 3456899999999999999543 58999999999999986521
Q ss_pred c-eEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 621 T-PIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 621 k-~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
. ....+......+..+.||..|..|++++.|+.|.+|.-.
T Consensus 246 ~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 246 PWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 1 122233345679999999999999999999999999743
No 151
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=2.7e-16 Score=188.13 Aligned_cols=333 Identities=28% Similarity=0.501 Sum_probs=258.9
Q ss_pred EEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-EEEEecCCCC-CeEEEEE-CCCCC-EEEEEeC-CCeeEEE
Q 048801 238 KLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF-CLASCRGHEG-DITDLAV-SSNNT-LVASASN-DFVIRVW 312 (1715)
Q Consensus 238 ~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk-~l~tL~gHs~-~VtsLaf-SpDg~-lLASGS~-DGtIrVW 312 (1715)
.+.+|...|.++.|.+.+..++.++.|+.+.+|+...+. .+..+.++.. .+..+.+ ++++. +++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 567899999999999999999999999999999998887 7777777544 7888887 88887 5555444 9999999
Q ss_pred ECCC-CCceEEEeCCCCCeEEEEecCCCCcceEEEEecC-CCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCC
Q 048801 313 RLPD-GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD-DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPS 390 (1715)
Q Consensus 313 Dl~t-g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~-DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~ 390 (1715)
++.. ......+..|...|.+++|+|++. ++++++. |+.+++|++..+..+..+
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 194 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGK---LLASGSSLDGTIKLWDLRTGKPLSTL---------------------- 194 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCC---EEEecCCCCCceEEEEcCCCceEEee----------------------
Confidence 9988 788888999999999999999997 6777775 999999999864433222
Q ss_pred CCCCCCCcceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeee-eecCCCCCeeEEEEccCccccccccc
Q 048801 391 SSNGLQSHQILCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELD-VLSGHENDVNYVQFSGCAVASRSAMS 468 (1715)
Q Consensus 391 ~~~~~h~~~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~-~l~gH~~~V~sLafspdg~as~~~~~ 468 (1715)
..|...|.+++|+|++. .+++++.|+.|++||...+ ..+. .+.+|...+ ...|++++
T Consensus 195 ---~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~---------~~~~~~~~~~~~~~-~~~~~~~~-------- 253 (466)
T COG2319 195 ---AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG---------KLLRSTLSGHSDSV-VSSFSPDG-------- 253 (466)
T ss_pred ---ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC---------cEEeeecCCCCcce-eEeECCCC--------
Confidence 12577899999999998 5555589999999987643 2233 577777775 44788764
Q ss_pred ccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCe
Q 048801 469 DAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGV 548 (1715)
Q Consensus 469 ~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~V 548 (1715)
..+++++.|+.+++|++..... ....+..|...|
T Consensus 254 ------------------~~~~~~~~d~~~~~~~~~~~~~----------------------------~~~~~~~~~~~v 287 (466)
T COG2319 254 ------------------SLLASGSSDGTIRLWDLRSSSS----------------------------LLRTLSGHSSSV 287 (466)
T ss_pred ------------------CEEEEecCCCcEEEeeecCCCc----------------------------EEEEEecCCccE
Confidence 5788999999999999985331 011114557789
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe--cCCCCeEEEEEccCC-CcEEEEEeCCCcEEEEECCCCceEEE
Q 048801 549 NMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT--GHSASSYVLDVHPFN-PRIAMSAGYDGRTIVWDIWEGTPIRI 625 (1715)
Q Consensus 549 tslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~--gH~~~V~sLafSP~d-g~lLaSgs~DGtI~VWDl~tgk~l~t 625 (1715)
.++.|+|++..+++++.|+.+.+|+..+........ .|...+..+.| +.+ ..++.++..|+.+.+|++........
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 366 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGKPLKT 366 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCceeEE
Confidence 999999999999989999999999999888777776 88888999999 534 34444446889999999988773333
Q ss_pred EEcccceEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCccc
Q 048801 626 YEIGRFKLVDGKFSPDGTSIVL-SDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 626 l~~h~~~V~svafSPDG~~LAs-gs~DG~I~IWdl~tGe~~ 665 (1715)
... ...+..+.+++ ...++. +..++.+.+|++......
T Consensus 367 ~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (466)
T COG2319 367 LEG-HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLL 405 (466)
T ss_pred ecC-CceEEEEEECC-CCCEEEEecCCCceEEEecccCeee
Confidence 332 22378899999 544444 688999999999877654
No 152
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.81 E-value=2.3e-16 Score=188.80 Aligned_cols=336 Identities=29% Similarity=0.482 Sum_probs=257.9
Q ss_pred eEEEEcCCCC-CeEEEEE-cCCCC-EEEEEeC-CCcEEEEeCCC-CcEEEEecCCCCCeEEEEECCCCCEEEEEeC-CCe
Q 048801 235 NIKKLRGHRD-AVYCAIF-DRSGR-FVITGSD-DRLVKIWSMET-AFCLASCRGHEGDITDLAVSSNNTLVASASN-DFV 308 (1715)
Q Consensus 235 ~l~~L~GH~~-~Vt~Vaf-SpDG~-~LaTGS~-DGtIrIWDl~t-gk~l~tL~gHs~~VtsLafSpDg~lLASGS~-DGt 308 (1715)
.+..+.++.. .+..+.+ ++++. +++..+. |+.+.+|+... ......+.+|...|.+++|+|++.++++++. |+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 179 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179 (466)
T ss_pred eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCc
Confidence 6667777554 7888877 88887 5555444 99999999998 7888999999999999999999999999886 999
Q ss_pred eEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCC
Q 048801 309 IRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNG 388 (1715)
Q Consensus 309 IrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~ 388 (1715)
+++|++..+..+..+.+|...|.+++|+|++. ..+++++.|+.|++||...+.....
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~d~~i~~wd~~~~~~~~~--------------------- 236 (466)
T COG2319 180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG--LLIASGSSDGTIRLWDLSTGKLLRS--------------------- 236 (466)
T ss_pred eEEEEcCCCceEEeeccCCCceEEEEEcCCcc--eEEEEecCCCcEEEEECCCCcEEee---------------------
Confidence 99999999999999999999999999998876 2455569999999998774443321
Q ss_pred CCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccc
Q 048801 389 PSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMS 468 (1715)
Q Consensus 389 ~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~ 468 (1715)
....|...+ ...|++++.++++++.|+.+++|++..... .+..+.+|...|.++.|.|++
T Consensus 237 ---~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~-------- 296 (466)
T COG2319 237 ---TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--------LLRTLSGHSSSVLSVAFSPDG-------- 296 (466)
T ss_pred ---ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--------EEEEEecCCccEEEEEECCCC--------
Confidence 011222332 228999998899999999999999976421 233336788999999999854
Q ss_pred ccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCe
Q 048801 469 DAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGV 548 (1715)
Q Consensus 469 ~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~V 548 (1715)
..+++++.|+.+.+|+..+....... ....|...+
T Consensus 297 ------------------~~~~~~~~d~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~ 331 (466)
T COG2319 297 ------------------KLLASGSSDGTVRLWDLETGKLLSSL---------------------------TLKGHEGPV 331 (466)
T ss_pred ------------------CEEEEeeCCCcEEEEEcCCCceEEEe---------------------------eecccCCce
Confidence 56777888899999987753311110 022445568
Q ss_pred eEEEeCCCCCEEEEE-ecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEE-EeCCCcEEEEECCCCceEEEE
Q 048801 549 NMIVWSLDNRFVLAA-IMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMS-AGYDGRTIVWDIWEGTPIRIY 626 (1715)
Q Consensus 549 tslafSPDG~~LaTg-s~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaS-gs~DGtI~VWDl~tgk~l~tl 626 (1715)
..+.|.+++..++.+ ..|+.+.+|++.............. +..+.+++ + ..+++ +..++.+.+|+..........
T Consensus 332 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (466)
T COG2319 332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNL 408 (466)
T ss_pred EEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeec
Confidence 888884343566655 6789999999988873333333322 88999998 7 55554 789999999999988888777
Q ss_pred EcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 627 EIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 627 ~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
..+...+..+.+++++..++.++.++.+.+|++.+
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 409 DGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 64436888999999999999999999999999977
No 153
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=4e-18 Score=211.78 Aligned_cols=274 Identities=14% Similarity=0.205 Sum_probs=212.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC
Q 048801 240 RGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA-FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL 318 (1715)
Q Consensus 240 ~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg-k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~ 318 (1715)
.+|...-+.|+|.|+|.+|+|++.||.|++|+...- ..-.++..+...|.+++.. +.+|++|+.+++|.+|.+..+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 479999999999999999999999999999997655 3334444477788888764 5599999999999999999988
Q ss_pred ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCc
Q 048801 319 PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH 398 (1715)
Q Consensus 319 ~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~ 398 (1715)
.-..|...+-++.+++|+.+|. +++.||.|-.|++-++.+...... ..+|..
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~---~iaagsdD~~vK~~~~~D~s~~~~-------------------------lrgh~a 139 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGK---MIAAGSDDTAVKLLNLDDSSQEKV-------------------------LRGHDA 139 (933)
T ss_pred ccceeeeeeccceEEEEecCCc---EEEeecCceeEEEEeccccchhee-------------------------ecccCC
Confidence 7666666778899999999998 899999999999999876553332 345788
Q ss_pred ceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCC-CCCeeEEEEccCcccccccccccccccccc
Q 048801 399 QILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGH-ENDVNYVQFSGCAVASRSAMSDAFKEENVP 477 (1715)
Q Consensus 399 ~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH-~~~V~sLafspdg~as~~~~~~~~~~~~~~ 477 (1715)
+|.++.|+|++.+||+.+.||.|+||++.++.+......... ....- ...+..++|+|++
T Consensus 140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k--~n~~~~s~i~~~~aW~Pk~----------------- 200 (933)
T KOG1274|consen 140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDK--DNEFILSRICTRLAWHPKG----------------- 200 (933)
T ss_pred ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCc--cccccccceeeeeeecCCC-----------------
Confidence 899999999999999999999999999987654221111100 11111 3456778999986
Q ss_pred cccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC
Q 048801 478 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN 557 (1715)
Q Consensus 478 ~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG 557 (1715)
..|+..+.|+.|++|+..+.. ..+.+. ...+...+.+++|+|+|
T Consensus 201 ---------g~la~~~~d~~Vkvy~r~~we---------~~f~Lr------------------~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 201 ---------GTLAVPPVDNTVKVYSRKGWE---------LQFKLR------------------DKLSSSKFSDLQWSPNG 244 (933)
T ss_pred ---------CeEEeeccCCeEEEEccCCce---------eheeec------------------ccccccceEEEEEcCCC
Confidence 578888899999999887533 333221 12234448999999999
Q ss_pred CEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcE
Q 048801 558 RFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRI 602 (1715)
Q Consensus 558 ~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~l 602 (1715)
.|||+++.||.|.|||+.+-.. .-....|.+++|.|+.+.+
T Consensus 245 ~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred cEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCee
Confidence 9999999999999999987221 2235679999999965543
No 154
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.7e-18 Score=193.17 Aligned_cols=294 Identities=16% Similarity=0.181 Sum_probs=212.8
Q ss_pred eEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcce
Q 048801 288 ITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPR 367 (1715)
Q Consensus 288 VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~ 367 (1715)
-.|+.|++.|.+||+|+.||.|.|||+.|...-+.+.+|..+|++++|+++|. .|++++.|..|.+||+..|.++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr---~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGR---KLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCC---EeeeecCCceeEEEeccCCCceeE
Confidence 68999999999999999999999999999999999999999999999999998 899999999999999999998887
Q ss_pred ecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecC
Q 048801 368 IYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSG 446 (1715)
Q Consensus 368 i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~g 446 (1715)
+.+ ...|+.+.|+|... .+++.-.+..-.+.++..+. +. .+..
T Consensus 103 irf--------------------------~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--------h~--~Lp~ 146 (405)
T KOG1273|consen 103 IRF--------------------------DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--------HS--VLPK 146 (405)
T ss_pred EEc--------------------------cCccceeeeccccCCeEEEEEecCCcEEEEecCCc--------ee--eccC
Confidence 766 34488889998543 23322223334444443211 00 0100
Q ss_pred C-CC----CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccc
Q 048801 447 H-EN----DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHL 521 (1715)
Q Consensus 447 H-~~----~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l 521 (1715)
. .+ .-.+..|.+. +++|++|...|.+.+++..+-+++...
T Consensus 147 d~d~dln~sas~~~fdr~--------------------------g~yIitGtsKGkllv~~a~t~e~vas~--------- 191 (405)
T KOG1273|consen 147 DDDGDLNSSASHGVFDRR--------------------------GKYIITGTSKGKLLVYDAETLECVASF--------- 191 (405)
T ss_pred CCccccccccccccccCC--------------------------CCEEEEecCcceEEEEecchheeeeee---------
Confidence 0 00 0111123333 489999999999999999875433221
Q ss_pred cCCCCCCCCCCCCCCCcccccCC-CCCeeEEEeCCCCCEEEEEecCCeEEEEECCCC-------c--eEEEEec--CCCC
Q 048801 522 KVPPPPLPPQPPRGGPRQRLLPT-PRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG-------S--LVHSLTG--HSAS 589 (1715)
Q Consensus 522 ~~~~~~~~~~~~~g~~~~~l~~h-~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg-------~--~l~tL~g--H~~~ 589 (1715)
... ...|..+.++..|++|++-+.|..|+.|++..- + +.+.+.. ....
T Consensus 192 --------------------rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~ 251 (405)
T KOG1273|consen 192 --------------------RITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQ 251 (405)
T ss_pred --------------------eechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhh
Confidence 111 246888999999999999999999999998631 1 1122211 1122
Q ss_pred eEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEccc-ceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccccc
Q 048801 590 SYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGR-FKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDA 668 (1715)
Q Consensus 590 V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~-~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~~ 668 (1715)
-.+++|+.++..++++...-..++||.-..|.+++.+.+.. ....++.|+|-...|++- ..|.++||....-+
T Consensus 252 Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~e----- 325 (405)
T KOG1273|consen 252 WKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVE----- 325 (405)
T ss_pred hhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeeccc-----
Confidence 35678888444444444456789999999999999999877 457799999998888877 77999999975432
Q ss_pred ccceeecCCCccEE
Q 048801 669 KYDQFFLGDYRPLI 682 (1715)
Q Consensus 669 ~~~~~fs~D~r~L~ 682 (1715)
.-.+|.||++.|.
T Consensus 326 -nwsafAPdFqele 338 (405)
T KOG1273|consen 326 -NWSAFAPDFQELE 338 (405)
T ss_pred -chhhcCchHHHHH
Confidence 2346888888774
No 155
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.79 E-value=1.4e-17 Score=193.86 Aligned_cols=308 Identities=17% Similarity=0.212 Sum_probs=224.9
Q ss_pred ccceeEEEEcCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEeCCCC----cEEEEecCCCCCeEEEEECCC-CCEEEEE
Q 048801 231 QKMQNIKKLRGHRDAVYCAIFDRSG--RFVITGSDDRLVKIWSMETA----FCLASCRGHEGDITDLAVSSN-NTLVASA 303 (1715)
Q Consensus 231 ~~~k~l~~L~GH~~~Vt~VafSpDG--~~LaTGS~DGtIrIWDl~tg----k~l~tL~gHs~~VtsLafSpD-g~lLASG 303 (1715)
.........+-|.+.|+|++|+|.. ++||+|..-|.|-+||+.+. .-+..+..|.++|.+|.|+|. ...+++.
T Consensus 174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS 253 (498)
T ss_pred ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee
Confidence 3455667788899999999999965 48888989999999999532 335567889999999999995 4688999
Q ss_pred eCCCeeEEEECCCCCce--EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCcc
Q 048801 304 SNDFVIRVWRLPDGLPI--SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKS 381 (1715)
Q Consensus 304 S~DGtIrVWDl~tg~~l--~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~ 381 (1715)
|.||+|++-|++.+..- ..+......+..+.|+.+.. .++.+..=|.+.+||++++...
T Consensus 254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~---~vl~~~~~G~f~~iD~R~~~s~---------------- 314 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESR---SVLFGDNVGNFNVIDLRTDGSE---------------- 314 (498)
T ss_pred ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCc---cEEEeecccceEEEEeecCCcc----------------
Confidence 99999999999876443 33333455678888988877 5677777779999999876521
Q ss_pred CCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCc
Q 048801 382 NVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 382 ~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg 460 (1715)
......|...|.+++++|-. .+|||++.|++++|||++....... ++-....|...|.+..|+|.+
T Consensus 315 --------~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-----p~lst~~HrrsV~sAyFSPs~ 381 (498)
T KOG4328|consen 315 --------YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-----PFLSTLPHRRSVNSAYFSPSG 381 (498)
T ss_pred --------chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC-----cceecccccceeeeeEEcCCC
Confidence 11123456689999999954 6899999999999999986432111 244556799999999999987
Q ss_pred ccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc
Q 048801 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR 540 (1715)
Q Consensus 461 ~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 540 (1715)
..|+|.+.|..|+|||..- ++.+... .. .+..
T Consensus 382 --------------------------gtl~TT~~D~~IRv~dss~------~sa~~~p-------~~---------~I~H 413 (498)
T KOG4328|consen 382 --------------------------GTLLTTCQDNEIRVFDSSC------ISAKDEP-------LG---------TIPH 413 (498)
T ss_pred --------------------------CceEeeccCCceEEeeccc------ccccCCc-------cc---------eeec
Confidence 4599999999999999741 1111100 00 0000
Q ss_pred ccCCCC--CeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCC-CeEE-EEEccCCCcEEEEEeCCCcEEEEE
Q 048801 541 LLPTPR--GVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSA-SSYV-LDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 541 l~~h~~--~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~-~V~s-LafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
-..+.. ..-..+|.|+..+|++|-.-..|-|+|...++.+..+..... .|.+ ..|||.+..+++.++..|.|+||-
T Consensus 414 n~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 414 NNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred cCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 000001 133458999999999999999999999998888888754433 4544 479996555776667788999986
Q ss_pred CC
Q 048801 617 IW 618 (1715)
Q Consensus 617 l~ 618 (1715)
-.
T Consensus 494 ~k 495 (498)
T KOG4328|consen 494 NK 495 (498)
T ss_pred cC
Confidence 43
No 156
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1.1e-18 Score=213.19 Aligned_cols=244 Identities=20% Similarity=0.362 Sum_probs=195.2
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEeCCC---CcEEEEecCCCCCeEEEEECCC-CCEEEEEeCCCeeEEEECCCCCce
Q 048801 246 VYCAIFDR-SGRFVITGSDDRLVKIWSMET---AFCLASCRGHEGDITDLAVSSN-NTLVASASNDFVIRVWRLPDGLPI 320 (1715)
Q Consensus 246 Vt~VafSp-DG~~LaTGS~DGtIrIWDl~t---gk~l~tL~gHs~~VtsLafSpD-g~lLASGS~DGtIrVWDl~tg~~l 320 (1715)
+..|.|.. +.++|||++..|.|.+||+.. .+++..|..|...|+++.|++. -.+|++|+.||+|++||++.....
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 33455653 567999999999999999986 5677788999999999999984 578999999999999999999999
Q ss_pred EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcce
Q 048801 321 SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI 400 (1715)
Q Consensus 321 ~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~V 400 (1715)
.++.+....|..+.|+|...+ .++++...|.|++||++.... .......|.+.|
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~--~F~s~~dsG~lqlWDlRqp~r------------------------~~~k~~AH~GpV 223 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGN--KFASIHDSGYLQLWDLRQPDR------------------------CEKKLTAHNGPV 223 (839)
T ss_pred ccccccchhhhceeeccCCCc--eEEEecCCceEEEeeccCchh------------------------HHHHhhcccCce
Confidence 999999999999999997654 899999999999999985432 122345688999
Q ss_pred eEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccccccc
Q 048801 401 LCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFK 480 (1715)
Q Consensus 401 tslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~ 480 (1715)
.|+.|+|++.+||||+.|+.|+||++.+... .+...+. ...+|.+|.|-|.-
T Consensus 224 ~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~----~~~~tIn----Tiapv~rVkWRP~~-------------------- 275 (839)
T KOG0269|consen 224 LCLNWHPNREWLATGGRDKMVKIWDMTDSRA----KPKHTIN----TIAPVGRVKWRPAR-------------------- 275 (839)
T ss_pred EEEeecCCCceeeecCCCccEEEEeccCCCc----cceeEEe----ecceeeeeeeccCc--------------------
Confidence 9999999999999999999999999986432 1222222 24589999999975
Q ss_pred CCcccCceEEEEc--CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CC
Q 048801 481 NSWFCHDNIVTCS--RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DN 557 (1715)
Q Consensus 481 ~s~~~~~~LaSgS--~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG 557 (1715)
...|++++ .|-.|+|||++.. .-+...+..|...++.++|.. |-
T Consensus 276 -----~~hLAtcsmv~dtsV~VWDvrRP----------------------------YIP~~t~~eH~~~vt~i~W~~~d~ 322 (839)
T KOG0269|consen 276 -----SYHLATCSMVVDTSVHVWDVRRP----------------------------YIPYATFLEHTDSVTGIAWDSGDR 322 (839)
T ss_pred -----cchhhhhhccccceEEEEeeccc----------------------------cccceeeeccCccccceeccCCCc
Confidence 35777776 5789999999841 124456778899999999975 55
Q ss_pred CEEEEEecCCeEEEEECCC
Q 048801 558 RFVLAAIMDCRICVWNAVD 576 (1715)
Q Consensus 558 ~~LaTgs~DGtI~IWDl~s 576 (1715)
..|.+++.||+|..-.+.+
T Consensus 323 ~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 323 INLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred eeeEeecCccHHHHhhhhc
Confidence 6778888888876554444
No 157
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=2.3e-17 Score=184.17 Aligned_cols=272 Identities=16% Similarity=0.199 Sum_probs=206.0
Q ss_pred eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEE
Q 048801 324 RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCC 403 (1715)
Q Consensus 324 ~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsl 403 (1715)
.+|..-|+++.|.+.|+ .+++|+.|++|+|||.....-.. ........|.+.|..+
T Consensus 10 s~h~DlihdVs~D~~GR---RmAtCSsDq~vkI~d~~~~s~~W---------------------~~Ts~Wrah~~Si~rV 65 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGR---RMATCSSDQTVKIWDSTSDSGTW---------------------SCTSSWRAHDGSIWRV 65 (361)
T ss_pred cCCcceeeeeeecccCc---eeeeccCCCcEEEEeccCCCCce---------------------EEeeeEEecCCcEEEE
Confidence 47888999999999998 89999999999999975443211 1123345678889999
Q ss_pred EEcc--CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccC
Q 048801 404 AYNA--NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKN 481 (1715)
Q Consensus 404 afSp--dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~ 481 (1715)
.|.+ -|+.+|+++.|+++.||.-................++......|+.|.|.|...
T Consensus 66 ~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hl-------------------- 125 (361)
T KOG2445|consen 66 VWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHL-------------------- 125 (361)
T ss_pred EecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhc--------------------
Confidence 9966 589999999999999998754333333344556677888889999999999642
Q ss_pred CcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC---CCC
Q 048801 482 SWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL---DNR 558 (1715)
Q Consensus 482 s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP---DG~ 558 (1715)
+-.+++++.||.++||+.-. ...+..|.....+..-.. ....+.....|+.|+| ...
T Consensus 126 ----GLklA~~~aDG~lRIYEA~d---p~nLs~W~Lq~Ei~~~~~-------------pp~~~~~~~~CvsWn~sr~~~p 185 (361)
T KOG2445|consen 126 ----GLKLAAASADGILRIYEAPD---PMNLSQWTLQHEIQNVID-------------PPGKNKQPCFCVSWNPSRMHEP 185 (361)
T ss_pred ----ceEEEEeccCcEEEEEecCC---ccccccchhhhhhhhccC-------------CcccccCcceEEeeccccccCc
Confidence 24799999999999998764 233445554433321111 1122445678899987 345
Q ss_pred EEEEEecC-----CeEEEEECCCCc----eEEEEecCCCCeEEEEEccCCC---cEEEEEeCCCcEEEEECCCC------
Q 048801 559 FVLAAIMD-----CRICVWNAVDGS----LVHSLTGHSASSYVLDVHPFNP---RIAMSAGYDGRTIVWDIWEG------ 620 (1715)
Q Consensus 559 ~LaTgs~D-----GtI~IWDl~sg~----~l~tL~gH~~~V~sLafSP~dg---~lLaSgs~DGtI~VWDl~tg------ 620 (1715)
+||+|+.+ +.++||....+. .+.+|.+|..+|++|+|.|.-+ .+||+++.|| |+||.+...
T Consensus 186 ~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ 264 (361)
T KOG2445|consen 186 LIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEE 264 (361)
T ss_pred eEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhh
Confidence 78888766 478899875532 4557789999999999999766 5899999999 999998621
Q ss_pred --------------ceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 621 --------------TPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 621 --------------k~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
+.+..+..|++.|+.+.|.-.|..|++++.||+|++|...
T Consensus 265 ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 265 EEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred hcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 2445677899999999999999999999999999999864
No 158
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.78 E-value=1.3e-17 Score=192.05 Aligned_cols=308 Identities=19% Similarity=0.274 Sum_probs=215.9
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCC---------cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 243 RDAVYCAIFDRSGR-FVITGSDDRLVKIWSMETA---------FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~-~LaTGS~DGtIrIWDl~tg---------k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
..+|+.+.|.+... .||||+.|..|+||-+..+ +.+..|..|...|+++.|+|+|.+||+|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46799999998766 9999999999999987532 3456788999999999999999999999999999999
Q ss_pred ECC--------C--------CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCC
Q 048801 313 RLP--------D--------GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDA 376 (1715)
Q Consensus 313 Dl~--------t--------g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~ 376 (1715)
-.. + ......+.+|...|+.++|+|++. ++++++.|..+++||+..|+....+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~---~l~s~s~dns~~l~Dv~~G~l~~~~-------- 161 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN---FLVSGSVDNSVRLWDVHAGQLLAIL-------- 161 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc---eeeeeeccceEEEEEeccceeEeec--------
Confidence 765 2 123456789999999999999998 8999999999999999988765432
Q ss_pred ccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC-CeeEEE
Q 048801 377 ITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN-DVNYVQ 455 (1715)
Q Consensus 377 i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~-~V~sLa 455 (1715)
..|.+.+..++|.|-++++++-+.|...+++.+.... ....|.. .+...+
T Consensus 162 -----------------~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~------------~~~~~~~~~m~~~~ 212 (434)
T KOG1009|consen 162 -----------------DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQ------------VIKRHGLDIMPAKA 212 (434)
T ss_pred -----------------cccccccceeecchhhhhhhhhccCcccceeeeeeee------------eeeeeeeeEeeecc
Confidence 3467789999999999999999988877777764321 1111110 011111
Q ss_pred EccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCC
Q 048801 456 FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRG 535 (1715)
Q Consensus 456 fspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g 535 (1715)
+.+. .....+++.-++.
T Consensus 213 ~~~~----------------------------------e~~s~rLfhDeTl----------------------------- 229 (434)
T KOG1009|consen 213 FNER----------------------------------EGKSTRLFHDETL----------------------------- 229 (434)
T ss_pred cCCC----------------------------------CcceeeeeecCch-----------------------------
Confidence 1110 0112223322210
Q ss_pred CCcccccCCCCCeeEEEeCCCCCEEEEEec----CC-----eEEEEECCC-CceEEEEecCCCCeEEEEEcc-------C
Q 048801 536 GPRQRLLPTPRGVNMIVWSLDNRFVLAAIM----DC-----RICVWNAVD-GSLVHSLTGHSASSYVLDVHP-------F 598 (1715)
Q Consensus 536 ~~~~~l~~h~~~VtslafSPDG~~LaTgs~----DG-----tI~IWDl~s-g~~l~tL~gH~~~V~sLafSP-------~ 598 (1715)
..-...++|+|||.+|++.+. ++ +.++++-.. .++...+.+-..++..+.|+| .
T Consensus 230 ---------ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~ 300 (434)
T KOG1009|consen 230 ---------KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPL 300 (434)
T ss_pred ---------hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccc
Confidence 112345788888888887532 12 234444322 233444545555555555543 0
Q ss_pred ----------CCcEEEEEeCCCcEEEEECCCCceEEEEE-cccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 048801 599 ----------NPRIAMSAGYDGRTIVWDIWEGTPIRIYE-IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 599 ----------dg~lLaSgs~DGtI~VWDl~tgk~l~tl~-~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe 663 (1715)
-+.++|.++ -..|+|||..+-.++.... .|-..|++++|++||..|+..+.||...+..++..+
T Consensus 301 ~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 301 SSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred cccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 122344444 4579999999888887665 366789999999999999999999998888776654
No 159
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.78 E-value=2.2e-19 Score=208.71 Aligned_cols=313 Identities=15% Similarity=0.205 Sum_probs=241.7
Q ss_pred CeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC
Q 048801 329 AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN 408 (1715)
Q Consensus 329 ~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd 408 (1715)
.-+.+.++.+|. +|+.|+.-|.|..+|+.++.+...+.+ ...|.++.|..+
T Consensus 131 GPY~~~ytrnGr---hlllgGrKGHlAa~Dw~t~~L~~Ei~v--------------------------~Etv~Dv~~LHn 181 (545)
T KOG1272|consen 131 GPYHLDYTRNGR---HLLLGGRKGHLAAFDWVTKKLHFEINV--------------------------METVRDVTFLHN 181 (545)
T ss_pred CCeeeeecCCcc---EEEecCCccceeeeecccceeeeeeeh--------------------------hhhhhhhhhhcc
Confidence 356788999998 899999999999999999988776644 344888999999
Q ss_pred CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCce
Q 048801 409 GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN 488 (1715)
Q Consensus 409 G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~ 488 (1715)
.++||++ ....++|||-.. .+++++..|. .|..+.|.|.- -+
T Consensus 182 eq~~AVA-QK~y~yvYD~~G----------tElHClk~~~-~v~rLeFLPyH--------------------------fL 223 (545)
T KOG1272|consen 182 EQFFAVA-QKKYVYVYDNNG----------TELHCLKRHI-RVARLEFLPYH--------------------------FL 223 (545)
T ss_pred hHHHHhh-hhceEEEecCCC----------cEEeehhhcC-chhhhcccchh--------------------------he
Confidence 9988887 578999999753 3456666554 78889998863 58
Q ss_pred EEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCe
Q 048801 489 IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCR 568 (1715)
Q Consensus 489 LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGt 568 (1715)
|++++..|.+..-|+.+|+.+. .+....+.+..++-+|-+..+-+|..+|+
T Consensus 224 L~~~~~~G~L~Y~DVS~GklVa-----------------------------~~~t~~G~~~vm~qNP~NaVih~GhsnGt 274 (545)
T KOG1272|consen 224 LVAASEAGFLKYQDVSTGKLVA-----------------------------SIRTGAGRTDVMKQNPYNAVIHLGHSNGT 274 (545)
T ss_pred eeecccCCceEEEeechhhhhH-----------------------------HHHccCCccchhhcCCccceEEEcCCCce
Confidence 8999999999999999866433 33444567788889999999999999999
Q ss_pred EEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEE
Q 048801 569 ICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLS 648 (1715)
Q Consensus 569 I~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsg 648 (1715)
|.+|.....+++..+..|.++|.+|++.+ +|++++|+|.|..|+|||++....+.++.. ..+...++||..| |+++
T Consensus 275 VSlWSP~skePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~ 350 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLAL 350 (545)
T ss_pred EEecCCCCcchHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceee
Confidence 99999999999999999999999999999 899999999999999999999888888875 5677889999888 5555
Q ss_pred eCCCeEEEEEC-CCCccccccccceeecCCCccEEEcCCCCeeeccccccc--------CcCCCCCcccCCCCCC-----
Q 048801 649 DDVGQIYLLNT-GQGESQKDAKYDQFFLGDYRPLIRDSLGNVLDQETQLVP--------HRRNIQDPLCDSSMIP----- 714 (1715)
Q Consensus 649 s~DG~I~IWdl-~tGe~~k~~~~~~~fs~D~r~L~~d~~g~vld~~tq~~p--------~~~~~~~~lvD~~~~p----- 714 (1715)
+....|.||.- ..|......+|..... .+.| ....+|| |...+.+++|+++|.|
T Consensus 351 ~~G~~v~iw~d~~~~s~~~~~pYm~H~~----------~~~V--~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~ 418 (545)
T KOG1272|consen 351 SYGDHVQIWKDALKGSGHGETPYMNHRC----------GGPV--EDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSL 418 (545)
T ss_pred ecCCeeeeehhhhcCCCCCCcchhhhcc----------Cccc--ccceeccHHHeeeccccCCceeEeccCCCCCCcchh
Confidence 56568999963 2222233334433211 1111 2355666 6777889999999999
Q ss_pred CCCccchhhhhhcccccceeecCCCCeEEeeeccccCccCCCCCchhhhcccccCCCccccCc
Q 048801 715 YEEPYQSMYQQRRLGALGIEWRPSSIKLAIGLDFSLGQDYAMPPLEDLERMMEPVPEFIDPVY 777 (1715)
Q Consensus 715 ~p~~~q~~~q~r~~g~~~l~~sPdg~~lAvg~~~~l~~~~~~~P~~d~~~~i~~~p~~i~~~~ 777 (1715)
..+||.+-.|+++.-... ---.++| +||...|..|..++
T Consensus 419 e~nPfetrKQRqE~EVr~-------------------LLeKipp-----ElIsLdp~~i~~vd 457 (545)
T KOG1272|consen 419 EDNPFETRKQRQEKEVRS-------------------LLEKIPP-----ELISLDPRVIGIVD 457 (545)
T ss_pred ccCcchhhhHHhHHHHHH-------------------HHhhCCh-----HhEEechhhccccC
Confidence 578899998888732211 0123666 78898888887764
No 160
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1.2e-17 Score=194.37 Aligned_cols=240 Identities=19% Similarity=0.279 Sum_probs=184.8
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC---cEEEE------------------ecCCCCCeEEEEECCC-CCEEEEEeCCCeeEE
Q 048801 254 SGRFVITGSDDRLVKIWSMETA---FCLAS------------------CRGHEGDITDLAVSSN-NTLVASASNDFVIRV 311 (1715)
Q Consensus 254 DG~~LaTGS~DGtIrIWDl~tg---k~l~t------------------L~gHs~~VtsLafSpD-g~lLASGS~DGtIrV 311 (1715)
-|+|+|.|..|..|.|||+.-. .+..+ -.+|+..|.+|+|+.+ ...||+||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 4689999999999999998521 11111 2379999999999875 468999999999999
Q ss_pred EECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 312 WRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 312 WDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
||+.+|++..++..|.+.|.++.|+|.... +|++|+.|++|.+.|.+........
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~--~LLsGs~D~~V~l~D~R~~~~s~~~----------------------- 325 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPS--VLLSGSYDGTVALKDCRDPSNSGKE----------------------- 325 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCce--EEEeccccceEEeeeccCccccCce-----------------------
Confidence 999999999999999999999999998764 8999999999999999842211110
Q ss_pred CCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccc
Q 048801 392 SNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDA 470 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~ 470 (1715)
-...+.|-.++|.|.. ..+++++.||+|+-+|++.. ..++..+.+|.+.|.+|++++..
T Consensus 326 --wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~--------~~~vwt~~AHd~~ISgl~~n~~~---------- 385 (463)
T KOG0270|consen 326 --WKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP--------GKPVWTLKAHDDEISGLSVNIQT---------- 385 (463)
T ss_pred --EEeccceEEEEecCCCceeEEEecCCceEEeeecCCC--------CCceeEEEeccCCcceEEecCCC----------
Confidence 0114568899999865 57888889999999999864 46788999999999999998754
Q ss_pred ccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeE
Q 048801 471 FKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNM 550 (1715)
Q Consensus 471 ~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vts 550 (1715)
+.+++|++.|+.|++|++....... +....-.-+...|
T Consensus 386 ---------------p~~l~t~s~d~~Vklw~~~~~~~~~---------------------------v~~~~~~~~rl~c 423 (463)
T KOG0270|consen 386 ---------------PGLLSTASTDKVVKLWKFDVDSPKS---------------------------VKEHSFKLGRLHC 423 (463)
T ss_pred ---------------CcceeeccccceEEEEeecCCCCcc---------------------------cccccccccceee
Confidence 5789999999999999987422100 0000001122567
Q ss_pred EEeCCCCC-EEEEEecCCeEEEEECCCCceE
Q 048801 551 IVWSLDNR-FVLAAIMDCRICVWNAVDGSLV 580 (1715)
Q Consensus 551 lafSPDG~-~LaTgs~DGtI~IWDl~sg~~l 580 (1715)
.++.|+-. +|++|+..+.++|||+.+...+
T Consensus 424 ~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 424 FALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccCCCcceEEEecCccceEEEeecccChhH
Confidence 77777654 5677888889999999776544
No 161
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.77 E-value=2e-16 Score=187.91 Aligned_cols=182 Identities=14% Similarity=0.185 Sum_probs=133.1
Q ss_pred ccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CCCEEEE
Q 048801 484 FCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVLA 562 (1715)
Q Consensus 484 ~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~LaT 562 (1715)
|+...|++++.||.|++|.+..+... .....+...+..|...|+.+.|+| -...|++
T Consensus 638 FD~~rLAVa~ddg~i~lWr~~a~gl~----------------------e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~ 695 (1012)
T KOG1445|consen 638 FDDERLAVATDDGQINLWRLTANGLP----------------------ENEMTPEKILTIHGEKITSLRFHPLAADVLAV 695 (1012)
T ss_pred CChHHeeecccCceEEEEEeccCCCC----------------------cccCCcceeeecccceEEEEEecchhhhHhhh
Confidence 34689999999999999998753311 111234456778899999999999 4568899
Q ss_pred EecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc-eEEEEEccc-ceEEEEEEcC
Q 048801 563 AIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT-PIRIYEIGR-FKLVDGKFSP 640 (1715)
Q Consensus 563 gs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk-~l~tl~~h~-~~V~svafSP 640 (1715)
++.|.+|++||+.+++....|.+|++.|.+++||| +++.+++.+.||+|+||.-.+++ ++..-.+.. ..-..+.|--
T Consensus 696 asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac 774 (1012)
T KOG1445|consen 696 ASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC 774 (1012)
T ss_pred hhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe
Confidence 99999999999999999999999999999999999 88999999999999999987764 333222111 1234578999
Q ss_pred CCCEEEEEeCCC----eEEEEECCCCc--ccc-------ccccceeecCCCccEEEcCCCC
Q 048801 641 DGTSIVLSDDVG----QIYLLNTGQGE--SQK-------DAKYDQFFLGDYRPLIRDSLGN 688 (1715)
Q Consensus 641 DG~~LAsgs~DG----~I~IWdl~tGe--~~k-------~~~~~~~fs~D~r~L~~d~~g~ 688 (1715)
||++|++.+.|. +|.+|+..+-. .+. ..+.-.++-.|...|.+...|.
T Consensus 775 dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD 835 (1012)
T KOG1445|consen 775 DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGD 835 (1012)
T ss_pred cCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCC
Confidence 999999887654 67788754321 111 1112234556666666655544
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=4.1e-18 Score=216.59 Aligned_cols=286 Identities=20% Similarity=0.338 Sum_probs=219.8
Q ss_pred EEEEcCCCC-EEEEE----------eCCCcEEEEeCCC--C----cEEEEecCCCCCeEEEEECCCCCE----EEEEeCC
Q 048801 248 CAIFDRSGR-FVITG----------SDDRLVKIWSMET--A----FCLASCRGHEGDITDLAVSSNNTL----VASASND 306 (1715)
Q Consensus 248 ~VafSpDG~-~LaTG----------S~DGtIrIWDl~t--g----k~l~tL~gHs~~VtsLafSpDg~l----LASGS~D 306 (1715)
.++|+|++. ++|+| +.+.++-||.+.- . +.+..+. -....+.++|.+.|.. ||.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 467888876 55554 3355677776532 2 2333333 3457889999987654 8899999
Q ss_pred CeeEEEECCC---C---CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCc
Q 048801 307 FVIRVWRLPD---G---LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGK 380 (1715)
Q Consensus 307 GtIrVWDl~t---g---~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~ 380 (1715)
|.|.+||... + ..+.+...|.+.|..|.|++...+ +|++|+.||.|.|||+...+.-....
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n--lLASGa~~geI~iWDlnn~~tP~~~~----------- 156 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN--LLASGADDGEILIWDLNKPETPFTPG----------- 156 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc--eeeccCCCCcEEEeccCCcCCCCCCC-----------
Confidence 9999999764 2 345667789999999999998775 89999999999999998643211110
Q ss_pred cCCCCCCCCCCCCCCCCcceeEEEEccC-CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCC--CCeeEEEEc
Q 048801 381 SNVPSNNGPSSSNGLQSHQILCCAYNAN-GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE--NDVNYVQFS 457 (1715)
Q Consensus 381 ~~~~~~~~~~~~~~~h~~~VtslafSpd-G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~--~~V~sLafs 457 (1715)
.......|.|++|+.. ..+|++++.+|.+.|||++..+ .+-.+..|. ..+..|+|+
T Consensus 157 ------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~---------pii~ls~~~~~~~~S~l~Wh 215 (1049)
T KOG0307|consen 157 ------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK---------PIIKLSDTPGRMHCSVLAWH 215 (1049)
T ss_pred ------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC---------cccccccCCCccceeeeeeC
Confidence 1223567999999975 4678899999999999998643 222333333 357789999
Q ss_pred cCcccccccccccccccccccccCCcccCceEEEEcCCC---eEEEEecCCCccCcccccccccccccCCCCCCCCCCCC
Q 048801 458 GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG---SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534 (1715)
Q Consensus 458 pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG---sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 534 (1715)
|+. ...|++++.|. .|.+||++..
T Consensus 216 P~~-------------------------aTql~~As~dd~~PviqlWDlR~a---------------------------- 242 (1049)
T KOG0307|consen 216 PDH-------------------------ATQLLVASGDDSAPVIQLWDLRFA---------------------------- 242 (1049)
T ss_pred CCC-------------------------ceeeeeecCCCCCceeEeeccccc----------------------------
Confidence 986 35677776554 5899999842
Q ss_pred CCCcccccCCCCCeeEEEeCCCC-CEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 048801 535 GGPRQRLLPTPRGVNMIVWSLDN-RFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTI 613 (1715)
Q Consensus 535 g~~~~~l~~h~~~VtslafSPDG-~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~ 613 (1715)
..+.+.+.+|..+|.++.|++.+ .+|++++.|+.|.+|+..+|+.+..+......+..+.|+|-++.++++++.||.|-
T Consensus 243 ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 243 SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheecccee
Confidence 23456678899999999999966 89999999999999999999999999998999999999998888999999999999
Q ss_pred EEECCCCc
Q 048801 614 VWDIWEGT 621 (1715)
Q Consensus 614 VWDl~tgk 621 (1715)
|+.+..+.
T Consensus 323 I~sl~~~~ 330 (1049)
T KOG0307|consen 323 IYSLQGTD 330 (1049)
T ss_pred eeeeecCC
Confidence 99986543
No 163
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.77 E-value=4.2e-17 Score=195.78 Aligned_cols=301 Identities=17% Similarity=0.237 Sum_probs=207.3
Q ss_pred EEECC---CCCEEEEEeCCCeeEEEECCCCCc------eEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCC
Q 048801 291 LAVSS---NNTLVASASNDFVIRVWRLPDGLP------ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY 361 (1715)
Q Consensus 291 LafSp---Dg~lLASGS~DGtIrVWDl~tg~~------l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~t 361 (1715)
..|++ ...+||.+..||.|.++|...... +.....|...|..+.|.| +.. +|++++.|.++++||+.+
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~--~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES--LLVSASGDSTIRPWDVKT 131 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce--eEEEccCCceeeeeeecc
Confidence 55654 346899999999999999764322 345568999999999999 443 899999999999999988
Q ss_pred CCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCC------
Q 048801 362 SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDS------ 434 (1715)
Q Consensus 362 g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~------ 434 (1715)
+.+...- ...+|...|.++||.+.. ..|++|+.||.|.|||++-......
T Consensus 132 s~l~G~~-----------------------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~ 188 (720)
T KOG0321|consen 132 SRLVGGR-----------------------LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNR 188 (720)
T ss_pred ceeecce-----------------------eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhh
Confidence 7653221 235678889999999955 6899999999999999975431100
Q ss_pred ------C--CCc----eeeeeecCCCCCeeE----EEEccCcccccccccccccccccccccCCcccCceEEEEcC-CCe
Q 048801 435 ------E--QPI----HELDVLSGHENDVNY----VQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR-DGS 497 (1715)
Q Consensus 435 ------~--~~~----~~l~~l~gH~~~V~s----Lafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~-DGs 497 (1715)
. .+. +.+.....+...|.+ +.| .+...||+++. |+.
T Consensus 189 ~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f---------------------------kDe~tlaSaga~D~~ 241 (720)
T KOG0321|consen 189 IYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF---------------------------KDESTLASAGAADST 241 (720)
T ss_pred hhccccCCCCCCchhhccccccccccCceeeeeEEEEE---------------------------eccceeeeccCCCcc
Confidence 0 000 001111222222222 222 23468888887 999
Q ss_pred EEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCC
Q 048801 498 AIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG 577 (1715)
Q Consensus 498 IrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg 577 (1715)
|+|||++......... +........-.....++.++.....|.+|++.+.|+.|++|++.+-
T Consensus 242 iKVWDLRk~~~~~r~e------------------p~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 242 IKVWDLRKNYTAYRQE------------------PRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred eEEEeecccccccccC------------------CCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence 9999999644221110 0000000011122456888999999999999999999999999763
Q ss_pred --ceEEEEecCCCCeE--EEEEccCCCcEEEEEeCCCcEEEEECCCCc-eEEEEEcccceEEEEEEcCCC-CEEEEEeCC
Q 048801 578 --SLVHSLTGHSASSY--VLDVHPFNPRIAMSAGYDGRTIVWDIWEGT-PIRIYEIGRFKLVDGKFSPDG-TSIVLSDDV 651 (1715)
Q Consensus 578 --~~l~tL~gH~~~V~--sLafSP~dg~lLaSgs~DGtI~VWDl~tgk-~l~tl~~h~~~V~svafSPDG-~~LAsgs~D 651 (1715)
.++..+.++...-. .-..+| ++.++++|+.|..+++|.+.+.+ ....+.+|...|++++|.|.. .-+|++++|
T Consensus 304 s~sP~~~~sg~~~~sf~vks~lSp-d~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD 382 (720)
T KOG0321|consen 304 SISPVAEFSGKLNSSFYVKSELSP-DDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDD 382 (720)
T ss_pred CcCchhhccCcccceeeeeeecCC-CCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccC
Confidence 34445555433211 123577 77899999999999999998754 566677888999999998743 346677999
Q ss_pred CeEEEEECCCCc
Q 048801 652 GQIYLLNTGQGE 663 (1715)
Q Consensus 652 G~I~IWdl~tGe 663 (1715)
..+.||++..|-
T Consensus 383 ~~~kiW~l~~~l 394 (720)
T KOG0321|consen 383 FRVKIWRLSNGL 394 (720)
T ss_pred cceEEEeccCch
Confidence 999999997663
No 164
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.76 E-value=2.5e-17 Score=187.82 Aligned_cols=266 Identities=18% Similarity=0.270 Sum_probs=194.9
Q ss_pred EeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeE
Q 048801 323 LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILC 402 (1715)
Q Consensus 323 L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vts 402 (1715)
...|.+.++.+...+-+... +.++-+..|.|.||++...- ..+..+. .........+......|...-..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~-~~aswse~G~V~Vw~l~~~l--~~l~~~~-------~~~~~s~~~Pl~t~~ghk~EGy~ 216 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEV-LCASWSENGRVQVWDLAPHL--NALSEPG-------LEVKDSEFRPLFTFNGHKGEGYG 216 (440)
T ss_pred ccccccccceeeecccCCcc-eeeeecccCcEEEEEchhhh--hhhcCcc-------ccccccccCceEEecccCcccee
Confidence 34688888888888776433 67788899999999986321 1111110 00011234455566777888899
Q ss_pred EEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccC
Q 048801 403 CAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKN 481 (1715)
Q Consensus 403 lafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~ 481 (1715)
++|||-. ..|++|..-+.|++|...++.-.. -...+.+|+..|..|+|+|..
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v------d~~Pf~gH~~SVEDLqWSptE--------------------- 269 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV------DQRPFTGHTKSVEDLQWSPTE--------------------- 269 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceee------cCccccccccchhhhccCCcc---------------------
Confidence 9999932 247888888999999998764311 123467799999999999975
Q ss_pred CcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEE
Q 048801 482 SWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL 561 (1715)
Q Consensus 482 s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~La 561 (1715)
...|++|+.||+|+|||++.+.. ........|...|+.|.|+.+-.+||
T Consensus 270 ----~~vfaScS~DgsIrIWDiRs~~~---------------------------~~~~~~kAh~sDVNVISWnr~~~lLa 318 (440)
T KOG0302|consen 270 ----DGVFASCSCDGSIRIWDIRSGPK---------------------------KAAVSTKAHNSDVNVISWNRREPLLA 318 (440)
T ss_pred ----CceEEeeecCceEEEEEecCCCc---------------------------cceeEeeccCCceeeEEccCCcceee
Confidence 47999999999999999997431 11223367888999999999888999
Q ss_pred EEecCCeEEEEECCC---CceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc----------------e
Q 048801 562 AAIMDCRICVWNAVD---GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT----------------P 622 (1715)
Q Consensus 562 Tgs~DGtI~IWDl~s---g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk----------------~ 622 (1715)
+|+.||+++|||++. ++++..|+-|..+|++|.|+|.....|+++|.|..|.|||+.... +
T Consensus 319 sG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlP 398 (440)
T KOG0302|consen 319 SGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLP 398 (440)
T ss_pred ecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCC
Confidence 999999999999975 678999999999999999999888999999999999999985311 1
Q ss_pred EEEEEcc--cceEEEEEEcCCCC-EEEEEeCCCeEEEE
Q 048801 623 IRIYEIG--RFKLVDGKFSPDGT-SIVLSDDVGQIYLL 657 (1715)
Q Consensus 623 l~tl~~h--~~~V~svafSPDG~-~LAsgs~DG~I~IW 657 (1715)
-+.+..| ...+-.+.|++.-. +|++.+.|| +.||
T Consensus 399 pQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 399 PQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred ceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 1122223 34577888988643 555666666 3444
No 165
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.76 E-value=1.4e-17 Score=182.59 Aligned_cols=311 Identities=18% Similarity=0.229 Sum_probs=216.1
Q ss_pred eEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEec-CCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 235 NIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR-GHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 235 ~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~-gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
+...|++|.+.|+|+.|..+++ |.+|..-|.|++|++.+.+.+..++ .|...|+.+.--|+ ..|.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 4567889999999999998875 8899999999999999999888888 57778999998887 4677888999999999
Q ss_pred CCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCC-cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCC
Q 048801 314 LPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG-TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSS 392 (1715)
Q Consensus 314 l~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DG-tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~ 392 (1715)
+.-+..+. .|.-.++++.|++.. +...+... .+..++-+....+.....+...+ .......
T Consensus 84 ia~s~~i~---i~Si~~nslgFCrfS-----l~~~~k~~eqll~yp~rgsde~h~~D~g~~tq----------v~i~dd~ 145 (323)
T KOG0322|consen 84 IAYSAFIS---IHSIVVNSLGFCRFS-----LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQ----------VQIADDS 145 (323)
T ss_pred ccCcceEE---Eeeeeccccccccce-----eccCCCcchhheecCCcccchhhhhccCccce----------eEccCch
Confidence 97755443 355667788887752 33333222 22222222111100000000000 0000111
Q ss_pred CCCCCcceeEEEEcc-CC--CeEEEecCCCeEEEEeCCCCCc-cCCCCCceeeeeecCCCCCeeEEEEccCccccccccc
Q 048801 393 NGLQSHQILCCAYNA-NG--TVFVTGSSDTFARVWSACKSSV-EDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMS 468 (1715)
Q Consensus 393 ~~~h~~~VtslafSp-dG--~~LatGs~DG~IrVWDl~t~~~-~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~ 468 (1715)
.....+.++|..+.. ++ -++++|.++|.+.+||+.++.. ....+..+.......|..+|.++.|.+..
T Consensus 146 ~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-------- 217 (323)
T KOG0322|consen 146 ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-------- 217 (323)
T ss_pred hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh--------
Confidence 122344577777544 23 2577888999999999987522 12222233445567799999999998643
Q ss_pred ccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCe
Q 048801 469 DAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGV 548 (1715)
Q Consensus 469 ~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~V 548 (1715)
+.=++|+.+..+..|++....... .....+.-...+|
T Consensus 218 ------------------~rGisgga~dkl~~~Sl~~s~gsl-------------------------q~~~e~~lknpGv 254 (323)
T KOG0322|consen 218 ------------------DRGISGGADDKLVMYSLNHSTGSL-------------------------QIRKEITLKNPGV 254 (323)
T ss_pred ------------------cCCcCCCccccceeeeeccccCcc-------------------------cccceEEecCCCc
Confidence 345677777788888776321000 0011122234468
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 549 NMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 549 tslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
..+.+-||++.+||++.|+.|+||+.+++.++..|+-|.+.|++++|+| +..++|+++.|++|-+|++
T Consensus 255 ~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 255 SGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred cceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 8899999999999999999999999999999999999999999999999 6789999999999999986
No 166
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.76 E-value=4.2e-17 Score=186.03 Aligned_cols=252 Identities=21% Similarity=0.308 Sum_probs=193.1
Q ss_pred ecCCCCCeEEEEECCCC--CEEEEEeCCCeeEEEECCC----------------CCceEEEeCCCCCeEEEEecCCCCcc
Q 048801 281 CRGHEGDITDLAVSSNN--TLVASASNDFVIRVWRLPD----------------GLPISVLRGHTGAVTAIAFSPRPSAI 342 (1715)
Q Consensus 281 L~gHs~~VtsLafSpDg--~lLASGS~DGtIrVWDl~t----------------g~~l~~L~gH~~~VtsLafSPdg~~~ 342 (1715)
.-.|.+.|+.+..++-+ .+.|+-+..|.|.||++.. .+++.++.+|.+.-++|+|||-...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g- 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG- 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-
Confidence 34688888888887754 4556667789999999842 3678888999999999999995432
Q ss_pred eEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeE
Q 048801 343 YQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFA 421 (1715)
Q Consensus 343 ~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~I 421 (1715)
.|++|..-+.|++|...++.... ....+..|...|-.++|||.. .+|++|+.||+|
T Consensus 226 -~LlsGDc~~~I~lw~~~~g~W~v----------------------d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsI 282 (440)
T KOG0302|consen 226 -RLLSGDCVKGIHLWEPSTGSWKV----------------------DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSI 282 (440)
T ss_pred -ccccCccccceEeeeeccCceee----------------------cCccccccccchhhhccCCccCceEEeeecCceE
Confidence 68899888999999987765311 112234478889999999954 689999999999
Q ss_pred EEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEE
Q 048801 422 RVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIW 501 (1715)
Q Consensus 422 rVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIW 501 (1715)
+|||++.+. .+......+|.+.|+.|.|+... .+|++|+.||+++||
T Consensus 283 rIWDiRs~~-------~~~~~~~kAh~sDVNVISWnr~~--------------------------~lLasG~DdGt~~iw 329 (440)
T KOG0302|consen 283 RIWDIRSGP-------KKAAVSTKAHNSDVNVISWNRRE--------------------------PLLASGGDDGTLSIW 329 (440)
T ss_pred EEEEecCCC-------ccceeEeeccCCceeeEEccCCc--------------------------ceeeecCCCceEEEE
Confidence 999998752 12223348999999999999864 589999999999999
Q ss_pred ecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC-CCEEEEEecCCeEEEEECCCCc--
Q 048801 502 IPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD-NRFVLAAIMDCRICVWNAVDGS-- 578 (1715)
Q Consensus 502 Dl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD-G~~LaTgs~DGtI~IWDl~sg~-- 578 (1715)
|+++-+ .+.++..+.-|..+|++|.|+|. ...|++++.|..|.|||+.--.
T Consensus 330 DLR~~~--------------------------~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ 383 (440)
T KOG0302|consen 330 DLRQFK--------------------------SGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADE 383 (440)
T ss_pred Ehhhcc--------------------------CCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCCh
Confidence 998622 23577788899999999999984 5677888899999999985311
Q ss_pred --------------eEEEEecC--CCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 579 --------------LVHSLTGH--SASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 579 --------------~l~tL~gH--~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
+.+.|--| ...|..|.||+.-+.+|++.+.|| +.||.
T Consensus 384 ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 384 EEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred hhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 01112223 345788999998889999999998 44553
No 167
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=8.4e-16 Score=191.70 Aligned_cols=361 Identities=17% Similarity=0.209 Sum_probs=253.5
Q ss_pred cccccceeEEEEcCCCCCeEEEEEcCCC---CEEEEEeCCCcEEEEeCCCCcEEEEec----------------------
Q 048801 228 TMVQKMQNIKKLRGHRDAVYCAIFDRSG---RFVITGSDDRLVKIWSMETAFCLASCR---------------------- 282 (1715)
Q Consensus 228 ~~~~~~k~l~~L~GH~~~Vt~VafSpDG---~~LaTGS~DGtIrIWDl~tgk~l~tL~---------------------- 282 (1715)
....+..++..|.+|..+++.+.+.|.. .++++++.||.|++||...+.+++++.
T Consensus 42 yS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~ 121 (792)
T KOG1963|consen 42 YSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVY 121 (792)
T ss_pred EecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeE
Confidence 3445678888999999999999998754 478899999999999986554332110
Q ss_pred --------------------------------------------------------------------------------
Q 048801 283 -------------------------------------------------------------------------------- 282 (1715)
Q Consensus 283 -------------------------------------------------------------------------------- 282 (1715)
T Consensus 122 ~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~ 201 (792)
T KOG1963|consen 122 VSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDIT 201 (792)
T ss_pred eecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhh
Confidence
Q ss_pred -CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC----CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEE
Q 048801 283 -GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD----GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW 357 (1715)
Q Consensus 283 -gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t----g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIW 357 (1715)
.|.-.++|.++||+++++|+|..||.|.||.--. ......+.-|...|++++|+++|. +|++||..|.+.+|
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~---~LlSGG~E~VLv~W 278 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGA---YLLSGGREGVLVLW 278 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCc---eEeecccceEEEEE
Confidence 2445678999999999999999999999996321 234566778999999999999998 89999999999999
Q ss_pred ecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCC
Q 048801 358 DARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQP 437 (1715)
Q Consensus 358 Dl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~ 437 (1715)
.+.+++. . .+|. -+..|..+.++||+.+.++...|..|.+....+.......+.
T Consensus 279 q~~T~~k--q-fLPR-----------------------Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsg 332 (792)
T KOG1963|consen 279 QLETGKK--Q-FLPR-----------------------LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISG 332 (792)
T ss_pred eecCCCc--c-cccc-----------------------cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccC
Confidence 9988762 1 1111 155699999999999999999999999998865433222111
Q ss_pred ceee--eeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccc
Q 048801 438 IHEL--DVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRW 515 (1715)
Q Consensus 438 ~~~l--~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~ 515 (1715)
.... ..-....+-.+.+.++|.. +.++-.+..|.|.+||+-+...+.++...
T Consensus 333 i~~~~~~~k~~~~~l~t~~~idpr~--------------------------~~~vln~~~g~vQ~ydl~td~~i~~~~v~ 386 (792)
T KOG1963|consen 333 IKPPTPSTKTRPQSLTTGVSIDPRT--------------------------NSLVLNGHPGHVQFYDLYTDSTIYKLQVC 386 (792)
T ss_pred ccCCCccccccccccceeEEEcCCC--------------------------CceeecCCCceEEEEeccccceeeeEEEE
Confidence 1111 0011223344556666632 67888999999999999875543322111
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe--------cCC--eEEEEECCCCceEEEE--
Q 048801 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI--------MDC--RICVWNAVDGSLVHSL-- 583 (1715)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs--------~DG--tI~IWDl~sg~~l~tL-- 583 (1715)
...+. .+ ...+.-+++.++.+..|.+++|+- .|| .+++|-......-..|
T Consensus 387 ~~n~~-------------~~-----~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T 448 (792)
T KOG1963|consen 387 DENYS-------------DG-----DVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNT 448 (792)
T ss_pred eeccc-------------CC-----cceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEE
Confidence 11110 00 002344688888898999999864 233 5788977554433332
Q ss_pred ---ecCCCCeEEEEEccCCCc-EEEEEeCCCcEEEEECCCC----------ceEEEEEcccceEEEEEEcCCCCEEEEEe
Q 048801 584 ---TGHSASSYVLDVHPFNPR-IAMSAGYDGRTIVWDIWEG----------TPIRIYEIGRFKLVDGKFSPDGTSIVLSD 649 (1715)
Q Consensus 584 ---~gH~~~V~sLafSP~dg~-lLaSgs~DGtI~VWDl~tg----------k~l~tl~~h~~~V~svafSPDG~~LAsgs 649 (1715)
..|...+.+.++.+.-.. .+++++.||.++||-+... .|...-.-|..+++.++||.||..|+ ++
T Consensus 449 ~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s 527 (792)
T KOG1963|consen 449 KINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VS 527 (792)
T ss_pred EEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-Ee
Confidence 478777666666543333 8889999999999988321 23322223678899999999996555 45
Q ss_pred CCCeEEEEECCCC
Q 048801 650 DVGQIYLLNTGQG 662 (1715)
Q Consensus 650 ~DG~I~IWdl~tG 662 (1715)
.++.|.|||..+.
T Consensus 528 ~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 528 FDDTITIWDYDTK 540 (792)
T ss_pred cCCEEEEecCCCh
Confidence 6689999998873
No 168
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.74 E-value=2.1e-16 Score=184.42 Aligned_cols=284 Identities=14% Similarity=0.142 Sum_probs=208.1
Q ss_pred CcEEEEeCCCCcEEEEecCCC--CCeEEEEECCCCCE-EEEEeCCCeeEEEECCCC--Cc--eEEEeCCCCCeEEEEecC
Q 048801 265 RLVKIWSMETAFCLASCRGHE--GDITDLAVSSNNTL-VASASNDFVIRVWRLPDG--LP--ISVLRGHTGAVTAIAFSP 337 (1715)
Q Consensus 265 GtIrIWDl~tgk~l~tL~gHs--~~VtsLafSpDg~l-LASGS~DGtIrVWDl~tg--~~--l~~L~gH~~~VtsLafSP 337 (1715)
..++|||+........+..|+ ..|.+++|+....+ +++.+.|..|++|.-... +. +..+.+. .-.|++...
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s 89 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACAS 89 (673)
T ss_pred CceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhh
Confidence 379999987665544443332 35889999887642 334456888999974322 11 1222222 334444443
Q ss_pred CCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC
Q 048801 338 RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS 417 (1715)
Q Consensus 338 dg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~ 417 (1715)
... ++++|+..+.|+|||++...+.+ ....|...|+++.++-...+||+++.
T Consensus 90 ~S~---y~~sgG~~~~Vkiwdl~~kl~hr-------------------------~lkdh~stvt~v~YN~~DeyiAsvs~ 141 (673)
T KOG4378|consen 90 QSL---YEISGGQSGCVKIWDLRAKLIHR-------------------------FLKDHQSTVTYVDYNNTDEYIASVSD 141 (673)
T ss_pred cce---eeeccCcCceeeehhhHHHHHhh-------------------------hccCCcceeEEEEecCCcceeEEecc
Confidence 333 89999999999999998433222 12346778999999999999999999
Q ss_pred CCeEEEEeCCCCCccCCCCCceeeeeecCC-CCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC
Q 048801 418 DTFARVWSACKSSVEDSEQPIHELDVLSGH-ENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG 496 (1715)
Q Consensus 418 DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH-~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG 496 (1715)
.|.|.|..+.++.. ...+... ...|.-+.|++.. ..+|.+++.+|
T Consensus 142 gGdiiih~~~t~~~---------tt~f~~~sgqsvRll~ys~sk-------------------------r~lL~~asd~G 187 (673)
T KOG4378|consen 142 GGDIIIHGTKTKQK---------TTTFTIDSGQSVRLLRYSPSK-------------------------RFLLSIASDKG 187 (673)
T ss_pred CCcEEEEecccCcc---------ccceecCCCCeEEEeeccccc-------------------------ceeeEeeccCC
Confidence 99999999987531 2223222 3456678888754 46888999999
Q ss_pred eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC-CEEEEEecCCeEEEEECC
Q 048801 497 SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN-RFVLAAIMDCRICVWNAV 575 (1715)
Q Consensus 497 sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG-~~LaTgs~DGtI~IWDl~ 575 (1715)
.|.+||+...... ......|..+...|+|+|.+ .+|++.+.|..|.+||+.
T Consensus 188 ~VtlwDv~g~sp~----------------------------~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 188 AVTLWDVQGMSPI----------------------------FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred eEEEEeccCCCcc----------------------------cchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 9999999863321 12234577888899999955 567889999999999998
Q ss_pred CCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-CceEEEEEcccceEEEEEEcCCC
Q 048801 576 DGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE-GTPIRIYEIGRFKLVDGKFSPDG 642 (1715)
Q Consensus 576 sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t-gk~l~tl~~h~~~V~svafSPDG 642 (1715)
..+....+. ...+...|+|++ +|.+|+.|...|.|..||++. ..++.++..|...|++++|-|.-
T Consensus 240 s~~s~~~l~-y~~Plstvaf~~-~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 240 SQASTDRLT-YSHPLSTVAFSE-CGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccccceee-ecCCcceeeecC-CceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 777766665 455778999999 889999999999999999975 57899999999999999998875
No 169
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.4e-16 Score=180.81 Aligned_cols=302 Identities=16% Similarity=0.231 Sum_probs=214.6
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC------CcEEEEec-CCCCCeEEEEECCCCCEEEEEeCCCe
Q 048801 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET------AFCLASCR-GHEGDITDLAVSSNNTLVASASNDFV 308 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~t------gk~l~tL~-gHs~~VtsLafSpDg~lLASGS~DGt 308 (1715)
.+.+.+|.+.|+++.|+.++++||+|++|..++||+++. .+++.... .|...|.|++|...+++|++|..+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 455789999999999999999999999999999999853 34554443 35689999999999999999999999
Q ss_pred eEEEECCCCCceEEEeC--CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 309 IRVWRLPDGLPISVLRG--HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 309 IrVWDl~tg~~l~~L~g--H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
|.+.|+++.+.+.++.. ..+.|+.+..+|..+ .|++.+.++.|.+||++.........++
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN---~~~~~t~~~~V~~~D~Rd~~~~~~~~~~--------------- 190 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN---TLIVVTRAKLVSFIDNRDRQNPISLVLP--------------- 190 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCc---eEEEEecCceEEEEeccCCCCCCceeee---------------
Confidence 99999999988877752 235999999999866 8999999999999999865522221111
Q ss_pred CCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceee---eeecCCCCCeeEEEEccCccc
Q 048801 387 NGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHEL---DVLSGHENDVNYVQFSGCAVA 462 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l---~~l~gH~~~V~sLafspdg~a 462 (1715)
...+.....+.|+|.. .+|++++..+-+-+||++.... +.... ..+......-..+.|+|+|
T Consensus 191 -------AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~-----~~~~~~~~~~L~~~~~~~M~~~~~~~G-- 256 (609)
T KOG4227|consen 191 -------ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQAR-----PVYQRSMFKGLPQENTEWMGSLWSPSG-- 256 (609)
T ss_pred -------cCCCccceeeeecCCCceeEEeccccCCCCceeeccccc-----hHHhhhccccCcccchhhhheeeCCCC--
Confidence 1123446788999954 6888999999999999986431 11000 1111111222456788876
Q ss_pred ccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccccc
Q 048801 463 SRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLL 542 (1715)
Q Consensus 463 s~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~ 542 (1715)
+.|++.-....-.+||+-+.++.... +.. .+.+ .
T Consensus 257 ------------------------~Q~msiRR~~~P~~~D~~S~R~~V~k--------~D~--------N~~G------Y 290 (609)
T KOG4227|consen 257 ------------------------NQFMSIRRGKCPLYFDFISQRCFVLK--------SDH--------NPNG------Y 290 (609)
T ss_pred ------------------------CeehhhhccCCCEEeeeecccceeEe--------ccC--------CCCc------c
Confidence 45555544444556666543211100 000 0000 0
Q ss_pred CCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC----------C-------------ceEEEEecCCCCeEEEEEccCC
Q 048801 543 PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD----------G-------------SLVHSLTGHSASSYVLDVHPFN 599 (1715)
Q Consensus 543 ~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s----------g-------------~~l~tL~gH~~~V~sLafSP~d 599 (1715)
.....+.+++|--|- .|++|+.+-.|++|.+.. | +.+.+|+||..-++.|.|+| .
T Consensus 291 ~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~-H 368 (609)
T KOG4227|consen 291 CNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ-H 368 (609)
T ss_pred eeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecC-C
Confidence 012235667776554 499999999999998843 1 13567899999999999999 7
Q ss_pred CcEEEEEeCCCcEEEEEC
Q 048801 600 PRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 600 g~lLaSgs~DGtI~VWDl 617 (1715)
..+|++.|....++||.-
T Consensus 369 ~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 369 NNLLVSSGVENSFKLWSD 386 (609)
T ss_pred cceEeccchhhheecccc
Confidence 789999999999999974
No 170
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.74 E-value=2.3e-16 Score=177.61 Aligned_cols=310 Identities=18% Similarity=0.282 Sum_probs=219.4
Q ss_pred EcCCCCCeEEEEEcC-----CCCEEEEEeCCCcEEEEeCCCC---cEEEEec--CCCCCeEEEEECCC----CCEEEEEe
Q 048801 239 LRGHRDAVYCAIFDR-----SGRFVITGSDDRLVKIWSMETA---FCLASCR--GHEGDITDLAVSSN----NTLVASAS 304 (1715)
Q Consensus 239 L~GH~~~Vt~VafSp-----DG~~LaTGS~DGtIrIWDl~tg---k~l~tL~--gHs~~VtsLafSpD----g~lLASGS 304 (1715)
..+|..+|+.++|.+ +-..+||+|. ..|.||..... ..++++. .|......++|+-| +-+||+|+
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 357899999999984 3346777765 47888886532 3444443 36778888899764 35889999
Q ss_pred CCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCC
Q 048801 305 NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384 (1715)
Q Consensus 305 ~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~ 384 (1715)
.-|.|+|.|+.++++...+.+|...|+.|.|+|+... ++++++.|..|++|++.+..++..+-
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~q--lvls~SkD~svRlwnI~~~~Cv~VfG--------------- 175 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQ--LVLSASKDHSVRLWNIQTDVCVAVFG--------------- 175 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCc--EEEEecCCceEEEEeccCCeEEEEec---------------
Confidence 9999999999999999999999999999999999764 89999999999999999988766541
Q ss_pred CCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCC------------C-------ceeeeeec
Q 048801 385 SNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQ------------P-------IHELDVLS 445 (1715)
Q Consensus 385 ~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~------------~-------~~~l~~l~ 445 (1715)
...+|...|.++.|+.+|.+|++++.|..|.+|++...+...... + .....+-.
T Consensus 176 -------G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~d 248 (385)
T KOG1034|consen 176 -------GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTD 248 (385)
T ss_pred -------ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccc
Confidence 135678899999999999999999999999999998543210000 0 00001122
Q ss_pred CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCC
Q 048801 446 GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPP 525 (1715)
Q Consensus 446 gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~ 525 (1715)
-|...|.|+.|- ++++++-+.++.|..|.... + ...++ .+.+
T Consensus 249 iHrnyVDCvrw~----------------------------gd~ilSkscenaI~~w~pgk------l---~e~~~-~vkp 290 (385)
T KOG1034|consen 249 IHRNYVDCVRWF----------------------------GDFILSKSCENAIVCWKPGK------L---EESIH-NVKP 290 (385)
T ss_pred cccchHHHHHHH----------------------------hhheeecccCceEEEEecch------h---hhhhh-ccCC
Confidence 344444444443 26899999999999997621 0 00111 0000
Q ss_pred CCCCCCCCCCCCcccccCCCCCeeEE--EeCCCCCEEEEEecCCeEEEEECCCCceE--EEEec--CCCCeEEEEEccCC
Q 048801 526 PPLPPQPPRGGPRQRLLPTPRGVNMI--VWSLDNRFVLAAIMDCRICVWNAVDGSLV--HSLTG--HSASSYVLDVHPFN 599 (1715)
Q Consensus 526 ~~~~~~~~~g~~~~~l~~h~~~Vtsl--afSPDG~~LaTgs~DGtI~IWDl~sg~~l--~tL~g--H~~~V~sLafSP~d 599 (1715)
+.. ......++.-....|.-+ +|.|-+++||.|...|.|++||+....+. .++.. ....|...+|+. +
T Consensus 291 ~es-----~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~-d 364 (385)
T KOG1034|consen 291 PES-----ATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR-D 364 (385)
T ss_pred Ccc-----ceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc-c
Confidence 000 011112222223344444 56678999999999999999999886653 23322 245688899998 7
Q ss_pred CcEEEEEeCCCcEEEEEC
Q 048801 600 PRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 600 g~lLaSgs~DGtI~VWDl 617 (1715)
+.+|+....|++|.-||.
T Consensus 365 gs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 365 GSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CcEEEEEeCCCcEEEEEe
Confidence 888888999999999985
No 171
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=3e-17 Score=208.89 Aligned_cols=294 Identities=18% Similarity=0.284 Sum_probs=215.8
Q ss_pred EEEECCCCC-EEEEE----------eCCCeeEEEECCC--C----CceEEEeCCCCCeEEEEecCCCCcc-eEEEEecCC
Q 048801 290 DLAVSSNNT-LVASA----------SNDFVIRVWRLPD--G----LPISVLRGHTGAVTAIAFSPRPSAI-YQLLSSSDD 351 (1715)
Q Consensus 290 sLafSpDg~-lLASG----------S~DGtIrVWDl~t--g----~~l~~L~gH~~~VtsLafSPdg~~~-~~LaSgS~D 351 (1715)
.++|+|++. +||+| +.+.++-||.+.- . +++..+. -....+.|+|.+.+... -+|+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 468898886 55655 2345566665532 2 2333333 34567899999877531 158889999
Q ss_pred CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCC
Q 048801 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSS 430 (1715)
Q Consensus 352 GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~ 430 (1715)
|.|.+||...-.. ............|.+.|..+.|++.. ++||+|+.||.|.|||+.+.+
T Consensus 90 G~I~ly~p~~~~~-------------------~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~ 150 (1049)
T KOG0307|consen 90 GNIVLYDPASIIA-------------------NASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE 150 (1049)
T ss_pred CceEEecchhhcc-------------------CcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcC
Confidence 9999999764200 00111233445688899999999965 499999999999999998643
Q ss_pred ccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCc
Q 048801 431 VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHG 510 (1715)
Q Consensus 431 ~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~ 510 (1715)
. +...- -......|.+|+|+... ...|++++.+|.+.|||++..+.+-
T Consensus 151 t-----P~~~~--~~~~~~eI~~lsWNrkv-------------------------qhILAS~s~sg~~~iWDlr~~~pii 198 (1049)
T KOG0307|consen 151 T-----PFTPG--SQAPPSEIKCLSWNRKV-------------------------SHILASGSPSGRAVIWDLRKKKPII 198 (1049)
T ss_pred C-----CCCCC--CCCCcccceEeccchhh-------------------------hHHhhccCCCCCceeccccCCCccc
Confidence 2 11111 12245689999998754 4689999999999999999643221
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC-EEEEEecCC---eEEEEECCC-CceEEEEec
Q 048801 511 KVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR-FVLAAIMDC---RICVWNAVD-GSLVHSLTG 585 (1715)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~-~LaTgs~DG---tI~IWDl~s-g~~l~tL~g 585 (1715)
.+. .......+..++|+|++. .|++++.|. .|.+||++. ...++++++
T Consensus 199 ~ls---------------------------~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~ 251 (1049)
T KOG0307|consen 199 KLS---------------------------DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG 251 (1049)
T ss_pred ccc---------------------------cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc
Confidence 110 011113477899999875 556666553 699999876 456788899
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC
Q 048801 586 HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGT-SIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 586 H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~-~LAsgs~DG~I~IWdl~tG 662 (1715)
|...|.+|.|++.|.++|+|++.|+.|.+|+..+|+.+..+......+..+.|+|... .|++++-||.|.|+.+..+
T Consensus 252 H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 252 HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 9999999999999999999999999999999999999999988777899999999766 7888899999999998655
No 172
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.73 E-value=2.9e-16 Score=176.17 Aligned_cols=284 Identities=18% Similarity=0.213 Sum_probs=207.7
Q ss_pred EEEEECCCCCEEEEEeCCCeeEEEECCCC-------Cc-----eEEEe-CCCCCeEEEEecCC----CCcceEEEEecCC
Q 048801 289 TDLAVSSNNTLVASASNDFVIRVWRLPDG-------LP-----ISVLR-GHTGAVTAIAFSPR----PSAIYQLLSSSDD 351 (1715)
Q Consensus 289 tsLafSpDg~lLASGS~DGtIrVWDl~tg-------~~-----l~~L~-gH~~~VtsLafSPd----g~~~~~LaSgS~D 351 (1715)
..+.|||||..|++-+.|..+.+|++... .. ..+++ .....|...+|-+. .+...++++.+.+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 45789999999999999999999998531 11 11111 23456777777531 1122388999999
Q ss_pred CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCC-CCC
Q 048801 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSAC-KSS 430 (1715)
Q Consensus 352 GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~-t~~ 430 (1715)
.-|++||.-+|++...+......+.+ ....|++|+|||..|++|. ...|+|||+. .+.
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~--------------------taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr 191 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEY--------------------TAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGR 191 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhh--------------------hhheeEEecCCCCeEeecc-cceEEEeeccCCCC
Confidence 99999999999876554333222222 1246899999999999875 6899999994 332
Q ss_pred ccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCc
Q 048801 431 VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHG 510 (1715)
Q Consensus 431 ~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~ 510 (1715)
-..... ....--.+..+-|.+++|+|.. ...++.|+...++-||.-..
T Consensus 192 ~c~vy~--t~~~~k~gq~giisc~a~sP~~-------------------------~~~~a~gsY~q~~giy~~~~----- 239 (406)
T KOG2919|consen 192 DCPVYT--TVTKGKFGQKGIISCFAFSPMD-------------------------SKTLAVGSYGQRVGIYNDDG----- 239 (406)
T ss_pred CCcchh--hhhcccccccceeeeeeccCCC-------------------------CcceeeecccceeeeEecCC-----
Confidence 110000 0011123446788999999965 36889999888888876553
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEec-CCeEEEEECCC-CceEEEEecCCC
Q 048801 511 KVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM-DCRICVWNAVD-GSLVHSLTGHSA 588 (1715)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~-DGtI~IWDl~s-g~~l~tL~gH~~ 588 (1715)
..++..+.+|.++|+.++|.++|+.|++|+. |-.|..||++. +.++..|..|.+
T Consensus 240 ------------------------~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~ 295 (406)
T KOG2919|consen 240 ------------------------RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVG 295 (406)
T ss_pred ------------------------CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhcc
Confidence 3455667789999999999999999999875 66899999975 567778887766
Q ss_pred -CeEEEEE--ccCCCcEEEEEeCCCcEEEEECCC-CceEEEEEcccceEEEEEEcCCCCEEEEEeC
Q 048801 589 -SSYVLDV--HPFNPRIAMSAGYDGRTIVWDIWE-GTPIRIYEIGRFKLVDGKFSPDGTSIVLSDD 650 (1715)
Q Consensus 589 -~V~sLaf--SP~dg~lLaSgs~DGtI~VWDl~t-gk~l~tl~~h~~~V~svafSPDG~~LAsgs~ 650 (1715)
.-..|-| .| .+.+|++|+.||.|++||+.+ |..+..+..+...+..++++|--.++|+++.
T Consensus 296 ~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 296 DTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred CccceEEEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 3334444 46 678999999999999999998 7878888878888999999999877777654
No 173
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.72 E-value=1.6e-16 Score=185.42 Aligned_cols=262 Identities=16% Similarity=0.226 Sum_probs=204.3
Q ss_pred CeEEEEEcCCCCEEEEE--eCCCcEEEEeCCCC--c--EEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC
Q 048801 245 AVYCAIFDRSGRFVITG--SDDRLVKIWSMETA--F--CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL 318 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTG--S~DGtIrIWDl~tg--k--~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~ 318 (1715)
.|.++.|..... |+++ +.|..|++|.-... + .+..+.|. .-.|++......|+++|+..++|+|||+....
T Consensus 36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl 112 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKL 112 (673)
T ss_pred cceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHH
Confidence 388899987653 4444 46888999974322 1 22223332 34555555566899999999999999999877
Q ss_pred ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCc
Q 048801 319 PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH 398 (1715)
Q Consensus 319 ~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~ 398 (1715)
+.+.+.+|...|+++.+.-... +|++++..|.|.|..+.++.....+..+ .+.
T Consensus 113 ~hr~lkdh~stvt~v~YN~~De---yiAsvs~gGdiiih~~~t~~~tt~f~~~------------------------sgq 165 (673)
T KOG4378|consen 113 IHRFLKDHQSTVTYVDYNNTDE---YIASVSDGGDIIIHGTKTKQKTTTFTID------------------------SGQ 165 (673)
T ss_pred HhhhccCCcceeEEEEecCCcc---eeEEeccCCcEEEEecccCccccceecC------------------------CCC
Confidence 8888999999999999998776 9999999999999999887654443221 133
Q ss_pred ceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccc
Q 048801 399 QILCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVP 477 (1715)
Q Consensus 399 ~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~ 477 (1715)
.|.-+.|++..+ +|.+++.+|.|.+||+.... ........|..+...|+|+|..
T Consensus 166 svRll~ys~skr~lL~~asd~G~VtlwDv~g~s--------p~~~~~~~HsAP~~gicfspsn----------------- 220 (673)
T KOG4378|consen 166 SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS--------PIFHASEAHSAPCRGICFSPSN----------------- 220 (673)
T ss_pred eEEEeecccccceeeEeeccCCeEEEEeccCCC--------cccchhhhccCCcCcceecCCc-----------------
Confidence 467899999775 56788999999999997542 2345677899999999999975
Q ss_pred cccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC
Q 048801 478 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN 557 (1715)
Q Consensus 478 ~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG 557 (1715)
..+||+.+.|..|.+||+.+.+... ......+.+.++|+++|
T Consensus 221 --------e~l~vsVG~Dkki~~yD~~s~~s~~------------------------------~l~y~~Plstvaf~~~G 262 (673)
T KOG4378|consen 221 --------EALLVSVGYDKKINIYDIRSQASTD------------------------------RLTYSHPLSTVAFSECG 262 (673)
T ss_pred --------cceEEEecccceEEEeecccccccc------------------------------eeeecCCcceeeecCCc
Confidence 4689999999999999998643211 12234567899999999
Q ss_pred CEEEEEecCCeEEEEECCC-CceEEEEecCCCCeEEEEEccCCC
Q 048801 558 RFVLAAIMDCRICVWNAVD-GSLVHSLTGHSASSYVLDVHPFNP 600 (1715)
Q Consensus 558 ~~LaTgs~DGtI~IWDl~s-g~~l~tL~gH~~~V~sLafSP~dg 600 (1715)
.+|++|...|.|+.||++. ..++.++..|...|++|+|-| .+
T Consensus 263 ~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~-s~ 305 (673)
T KOG4378|consen 263 TYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP-SP 305 (673)
T ss_pred eEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeee-cc
Confidence 9999999999999999976 567889999999999999988 44
No 174
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=5.5e-16 Score=180.58 Aligned_cols=305 Identities=16% Similarity=0.206 Sum_probs=209.8
Q ss_pred EEEECCCCCEEEEEeCC---Ce--eEEEECCCCCceEEEeCCC----CCeEEEEecCC----CCcceEEEEecCCCcEEE
Q 048801 290 DLAVSSNNTLVASASND---FV--IRVWRLPDGLPISVLRGHT----GAVTAIAFSPR----PSAIYQLLSSSDDGTCRI 356 (1715)
Q Consensus 290 sLafSpDg~lLASGS~D---Gt--IrVWDl~tg~~l~~L~gH~----~~VtsLafSPd----g~~~~~LaSgS~DGtVrI 356 (1715)
.+.+-|+.++|+++-.+ .. |+||+- ...-. +-.|. ....|++|... +....+++.|+.|..|.|
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~--~e~nl-YvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI 206 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNE--EEENL-YVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI 206 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcC--CCcce-eEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence 45566767777777443 23 444543 22111 11122 23356666543 222348999999999999
Q ss_pred EecCCCC-CcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCC
Q 048801 357 WDARYSQ-YSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDS 434 (1715)
Q Consensus 357 WDl~tg~-~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~ 434 (1715)
||+.--. ..+.+.+.......... ..........|...|..++|+..- +.||+|+.|.+|.+||+.+++
T Consensus 207 WDLDI~d~v~P~~~LGs~~sk~~~k-----~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~---- 277 (463)
T KOG0270|consen 207 WDLDIVDAVLPCVTLGSKASKKKKK-----KGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK---- 277 (463)
T ss_pred eccccccccccceeechhhhhhhhh-----hcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC----
Confidence 9986432 22222221110000000 111223345678888999998754 689999999999999999864
Q ss_pred CCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccc
Q 048801 435 EQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGR 514 (1715)
Q Consensus 435 ~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~ 514 (1715)
+..++..|...|.++.|+|.. +..|++|+.|++|.+.|.+.....+
T Consensus 278 -----p~~s~~~~~k~Vq~l~wh~~~-------------------------p~~LLsGs~D~~V~l~D~R~~~~s~---- 323 (463)
T KOG0270|consen 278 -----PKSSITHHGKKVQTLEWHPYE-------------------------PSVLLSGSYDGTVALKDCRDPSNSG---- 323 (463)
T ss_pred -----cceehhhcCCceeEEEecCCC-------------------------ceEEEeccccceEEeeeccCccccC----
Confidence 466777899999999999975 5799999999999999998411110
Q ss_pred ccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC-EEEEEecCCeEEEEECCCC-ceEEEEecCCCCeEE
Q 048801 515 WTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR-FVLAAIMDCRICVWNAVDG-SLVHSLTGHSASSYV 592 (1715)
Q Consensus 515 ~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~-~LaTgs~DGtI~IWDl~sg-~~l~tL~gH~~~V~s 592 (1715)
..-...+.|..++|.|... .++++..||+|+-+|++.. +++.++.+|.++|.+
T Consensus 324 -------------------------~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISg 378 (463)
T KOG0270|consen 324 -------------------------KEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISG 378 (463)
T ss_pred -------------------------ceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcce
Confidence 0112245788899998654 5667789999999999875 999999999999999
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEECCCCce--EEEEEcccceEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccc
Q 048801 593 LDVHPFNPRIAMSAGYDGRTIVWDIWEGTP--IRIYEIGRFKLVDGKFSPDGT-SIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 593 LafSP~dg~lLaSgs~DGtI~VWDl~tgk~--l~tl~~h~~~V~svafSPDG~-~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
|++++..+.+++|++.|+.|++|++..-.+ +..-.-.-+...|.++.|+-. .||+|+..+.++|||+.++...
T Consensus 379 l~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 379 LSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 999998889999999999999999864333 221111122356777888754 5778888889999999887544
No 175
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=6.7e-16 Score=170.97 Aligned_cols=270 Identities=22% Similarity=0.345 Sum_probs=204.0
Q ss_pred CCCcEEEEeCCCCc---EEEEecCCCCCeEEEEECCC-CCEEEEEeCC-------CeeEEEECCCC---------CceEE
Q 048801 263 DDRLVKIWSMETAF---CLASCRGHEGDITDLAVSSN-NTLVASASND-------FVIRVWRLPDG---------LPISV 322 (1715)
Q Consensus 263 ~DGtIrIWDl~tgk---~l~tL~gHs~~VtsLafSpD-g~lLASGS~D-------GtIrVWDl~tg---------~~l~~ 322 (1715)
.|+.|.+..++.+. .-..|..|.+.|..|+-+|- .++|+++..+ ..+.||.+... +++..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 36888888776542 23457778999999999994 5666766542 24789988542 33444
Q ss_pred Ee-CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCc-ceecCCCCCCCccCccCCCCCCCCCCCCCCCCcce
Q 048801 323 LR-GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS-PRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI 400 (1715)
Q Consensus 323 L~-gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l-~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~V 400 (1715)
|. .+-+.|.|+.|.|++. .|++-. |..|.+|++..+..+ ..+. ......+....
T Consensus 118 Ldteavg~i~cvew~Pns~---klasm~-dn~i~l~~l~ess~~vaev~--------------------ss~s~e~~~~f 173 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSD---KLASMD-DNNIVLWSLDESSKIVAEVL--------------------SSESAEMRHSF 173 (370)
T ss_pred CCHHHhCceeeEEEcCCCC---eeEEec-cCceEEEEcccCcchheeec--------------------cccccccccee
Confidence 54 4567899999999886 566655 888999999876542 1111 11112245668
Q ss_pred eEEEEcc--CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccccc
Q 048801 401 LCCAYNA--NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPK 478 (1715)
Q Consensus 401 tslafSp--dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~ 478 (1715)
++-+|+| +|+.+++. .|+++..||+++.+. ....-.+|...|..+.|+|+.
T Consensus 174 tsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~--------~~sI~dAHgq~vrdlDfNpnk------------------ 226 (370)
T KOG1007|consen 174 TSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKK--------NNSIEDAHGQRVRDLDFNPNK------------------ 226 (370)
T ss_pred cccccCCCCccceEEEe-CCCcEEEEEccchhh--------hcchhhhhcceeeeccCCCCc------------------
Confidence 8899998 78888876 479999999997532 223446788899999999986
Q ss_pred ccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC-C
Q 048801 479 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD-N 557 (1715)
Q Consensus 479 ~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD-G 557 (1715)
+.+|++|+.||.|+|||.+.. ..++..+.+|...|.++.|+|. .
T Consensus 227 -------q~~lvt~gDdgyvriWD~R~t----------------------------k~pv~el~~HsHWvW~VRfn~~hd 271 (370)
T KOG1007|consen 227 -------QHILVTCGDDGYVRIWDTRKT----------------------------KFPVQELPGHSHWVWAVRFNPEHD 271 (370)
T ss_pred -------eEEEEEcCCCccEEEEeccCC----------------------------CccccccCCCceEEEEEEecCccc
Confidence 478999999999999999852 2456778899999999999984 5
Q ss_pred CEEEEEecCCeEEEEECCCC-----------------------------ceEEEEecCCCCeEEEEEccCCCcEEEEEeC
Q 048801 558 RFVLAAIMDCRICVWNAVDG-----------------------------SLVHSLTGHSASSYVLDVHPFNPRIAMSAGY 608 (1715)
Q Consensus 558 ~~LaTgs~DGtI~IWDl~sg-----------------------------~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~ 608 (1715)
++|++|+.|..|.+|...+- ..+.++..|...|++++|+.-++.++|+-++
T Consensus 272 qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSY 351 (370)
T KOG1007|consen 272 QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSY 351 (370)
T ss_pred eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEecc
Confidence 67889999999999976431 1345677899999999999999999999999
Q ss_pred CCcEEEEECC
Q 048801 609 DGRTIVWDIW 618 (1715)
Q Consensus 609 DGtI~VWDl~ 618 (1715)
||++.|=.+.
T Consensus 352 DGRviIs~V~ 361 (370)
T KOG1007|consen 352 DGRVIISSVP 361 (370)
T ss_pred CceEEeecCC
Confidence 9999987663
No 176
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.69 E-value=7.4e-16 Score=173.53 Aligned_cols=281 Identities=18% Similarity=0.354 Sum_probs=200.6
Q ss_pred CCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCC-CEEEEEeCCCeeEEEECC
Q 048801 241 GHRDAVYCAIFDRS----GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNN-TLVASASNDFVIRVWRLP 315 (1715)
Q Consensus 241 GH~~~Vt~VafSpD----G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg-~lLASGS~DGtIrVWDl~ 315 (1715)
.|....+.++|+-| ..+||.||.-|.|+|.|+.++++...+.+|...|+.|.|.|+. ++|++||.|.+|++|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 47888899999754 3489999999999999999999999999999999999999975 799999999999999999
Q ss_pred CCCceEEE---eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCC--CCCccCccCCCCCCCC-
Q 048801 316 DGLPISVL---RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKP--PDAITGKSNVPSNNGP- 389 (1715)
Q Consensus 316 tg~~l~~L---~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~--~~~i~g~~~~~~~~~~- 389 (1715)
+..++..+ .||.+.|.++.|++++. +|++++.|..|++|++...+....+....+ +.........+....+
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd---~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGD---RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCC---eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence 99999987 47999999999999998 899999999999999985543322211100 0000000000000011
Q ss_pred CCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCC-c-c---CCCCCceeeeeecCCCCCeeEEEEccCccccc
Q 048801 390 SSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSS-V-E---DSEQPIHELDVLSGHENDVNYVQFSGCAVASR 464 (1715)
Q Consensus 390 ~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~-~-~---~~~~~~~~l~~l~gH~~~V~sLafspdg~as~ 464 (1715)
......|...|.|+.|- |.++++-+-++.|..|....-. . . ........+..+.-....|.-+.|.-+.
T Consensus 244 fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~---- 317 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP---- 317 (385)
T ss_pred ccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH----
Confidence 12455678888888886 4789998889999999873111 0 0 0001112223334444556666654332
Q ss_pred ccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCC
Q 048801 465 SAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPT 544 (1715)
Q Consensus 465 ~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h 544 (1715)
..+.||.|...|.|.+||++...... .....-...
T Consensus 318 --------------------~~~~la~gnq~g~v~vwdL~~~ep~~-------------------------~ttl~~s~~ 352 (385)
T KOG1034|consen 318 --------------------WQKMLALGNQSGKVYVWDLDNNEPPK-------------------------CTTLTHSKS 352 (385)
T ss_pred --------------------HHHHHhhccCCCcEEEEECCCCCCcc-------------------------CceEEeccc
Confidence 14789999999999999998633110 001111122
Q ss_pred CCCeeEEEeCCCCCEEEEEecCCeEEEEECC
Q 048801 545 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAV 575 (1715)
Q Consensus 545 ~~~VtslafSPDG~~LaTgs~DGtI~IWDl~ 575 (1715)
...|+..+||.||.+|+..+.|++|.-||..
T Consensus 353 ~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 353 GSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 4468999999999999999999999999853
No 177
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=3.3e-16 Score=186.79 Aligned_cols=271 Identities=25% Similarity=0.303 Sum_probs=194.9
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC--------CcEEEEecCCCCCeEEEEECCCCCEEEEEe
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET--------AFCLASCRGHEGDITDLAVSSNNTLVASAS 304 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~t--------gk~l~tL~gHs~~VtsLafSpDg~lLASGS 304 (1715)
...-.++..|.+.|++++|.+....|++|+.||+|++|+++. -+.+.+|++|.++|.|+++.+++..+++|+
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence 344458899999999999999999999999999999999932 257889999999999999999999999999
Q ss_pred CCCeeEEEECCCC----------CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCC
Q 048801 305 NDFVIRVWRLPDG----------LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPP 374 (1715)
Q Consensus 305 ~DGtIrVWDl~tg----------~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~ 374 (1715)
.||+|+.|++... ....++.||.+.|+.+++++... .|++++.||+|++|+...... .++..+.
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~---~Llscs~DgTvr~w~~~~~~~-~~f~~~~-- 437 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD---RLLSCSSDGTVRLWEPTEESP-CTFGEPK-- 437 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc---ceeeecCCceEEeeccCCcCc-cccCCcc--
Confidence 9999999976421 23456789999999999999876 799999999999998765432 1111100
Q ss_pred CCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeE
Q 048801 375 DAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNY 453 (1715)
Q Consensus 375 ~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~s 453 (1715)
....-+++.|-... ...+ .+.....+++.+.. .+..
T Consensus 438 ---------------------e~g~Plsvd~~ss~~a~~~---~s~~~~~~~~~~~e-------------------v~s~ 474 (577)
T KOG0642|consen 438 ---------------------EHGYPLSVDRTSSRPAHSL---ASFRFGYTSIDDME-------------------VVSD 474 (577)
T ss_pred ---------------------ccCCcceEeeccchhHhhh---hhcccccccchhhh-------------------hhhh
Confidence 01112233332111 1111 11122222221100 0000
Q ss_pred EEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCC
Q 048801 454 VQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPP 533 (1715)
Q Consensus 454 Lafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 533 (1715)
+.+.+. +.++.
T Consensus 475 ~~~~~s---------------------------------~~~~~------------------------------------ 485 (577)
T KOG0642|consen 475 LLIFES---------------------------------SASPG------------------------------------ 485 (577)
T ss_pred eeeccc---------------------------------cCCCc------------------------------------
Confidence 001000 00000
Q ss_pred CCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 048801 534 RGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTI 613 (1715)
Q Consensus 534 ~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~ 613 (1715)
......++.+.+.|.+.+.+++..|+.|+++|..++.+++....|...++++++.| ++-+|++++.||.|+
T Consensus 486 --------~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~ 556 (577)
T KOG0642|consen 486 --------PRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVR 556 (577)
T ss_pred --------ccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecC-CCceEEeecCCceee
Confidence 00123466788899999999999999999999999999999999999999999999 778889999999999
Q ss_pred EEECCCCceEEEEEccc
Q 048801 614 VWDIWEGTPIRIYEIGR 630 (1715)
Q Consensus 614 VWDl~tgk~l~tl~~h~ 630 (1715)
+|.+....++.....|+
T Consensus 557 l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 557 LWKLDVKTCVLESTAHR 573 (577)
T ss_pred hhhccchheeecccccc
Confidence 99998777776655443
No 178
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.2e-15 Score=179.95 Aligned_cols=181 Identities=25% Similarity=0.384 Sum_probs=142.8
Q ss_pred cccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEe-cCCCCCeEEEEECC--CCCEEEEEeCC
Q 048801 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASC-RGHEGDITDLAVSS--NNTLVASASND 306 (1715)
Q Consensus 230 ~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL-~gHs~~VtsLafSp--Dg~lLASGS~D 306 (1715)
+..+.+-+.|.||++.|+|++|+.+|.+||+||+|-.|.|||.-..++++.+ +||...|.++.|-| ++++|++|..|
T Consensus 37 lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 37 LRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred HhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCc
Confidence 3445667789999999999999999999999999999999999888887776 68999999999998 56799999999
Q ss_pred CeeEEEECCC----------CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCC
Q 048801 307 FVIRVWRLPD----------GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDA 376 (1715)
Q Consensus 307 GtIrVWDl~t----------g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~ 376 (1715)
..|+|+|+.. ......+..|...|..|+..|+++. .+.+++.||+|+-+|++.......- ...
T Consensus 117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph--tfwsasEDGtirQyDiREph~c~p~-----~~~ 189 (758)
T KOG1310|consen 117 KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH--TFWSASEDGTIRQYDIREPHVCNPD-----EDC 189 (758)
T ss_pred ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc--eEEEecCCcceeeecccCCccCCcc-----ccc
Confidence 9999999974 2345566789999999999999865 7999999999999999864321110 000
Q ss_pred ccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCC
Q 048801 377 ITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSAC 427 (1715)
Q Consensus 377 i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~ 427 (1715)
. .........--...|+.++|.. .+|++|+.|-.+++||.+
T Consensus 190 ~----------~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 190 P----------SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred c----------HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 0 0000011112346899999954 689999999999999954
No 179
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.69 E-value=5.8e-15 Score=165.81 Aligned_cols=275 Identities=19% Similarity=0.264 Sum_probs=200.8
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCC--------Cc----EEEEecC-CCCCeEEEEEC-------CCCCEEEEEeCCC
Q 048801 248 CAIFDRSGRFVITGSDDRLVKIWSMET--------AF----CLASCRG-HEGDITDLAVS-------SNNTLVASASNDF 307 (1715)
Q Consensus 248 ~VafSpDG~~LaTGS~DGtIrIWDl~t--------gk----~l~tL~g-Hs~~VtsLafS-------pDg~lLASGS~DG 307 (1715)
.+.|+|||..|++-+.|..+.+|++-. +. ...+++- ....|...+|- |+..++|+.+.+.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 466999999999999999999998731 11 1111221 23457777774 5778999999999
Q ss_pred eeEEEECCCCCceEEEeC--CCC---CeEEEEecCCCCcceEEEEecCCCcEEEEec-CCCCCcceecCCCCCCCccCcc
Q 048801 308 VIRVWRLPDGLPISVLRG--HTG---AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA-RYSQYSPRIYLPKPPDAITGKS 381 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~g--H~~---~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl-~tg~~l~~i~~~~~~~~i~g~~ 381 (1715)
-|++||.-+|+....+.+ |.. ...+|+|+|||. +|++ +....|+++|+ +.|.........
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe---qlfa-GykrcirvFdt~RpGr~c~vy~t~---------- 199 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE---QLFA-GYKRCIRVFDTSRPGRDCPVYTTV---------- 199 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC---eEee-cccceEEEeeccCCCCCCcchhhh----------
Confidence 999999999998877753 333 456899999997 5554 55678999999 555433222110
Q ss_pred CCCCCCCCCCCCCCCCcceeEEEEccC-CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCc
Q 048801 382 NVPSNNGPSSSNGLQSHQILCCAYNAN-GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 382 ~~~~~~~~~~~~~~h~~~VtslafSpd-G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg 460 (1715)
.....+..+-|.|++|+|- ...+++|+....+-||.-... .++..+.+|.+.|+.++|.++|
T Consensus 200 --------~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~---------~pl~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 200 --------TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR---------RPLQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred --------hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC---------CceeeecccCCCeeeEEeccCc
Confidence 0111233556899999995 458999998888888876553 3577788999999999999997
Q ss_pred ccccccccccccccccccccCCcccCceEEEEc-CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcc
Q 048801 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQ 539 (1715)
Q Consensus 461 ~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~ 539 (1715)
+.|.+|+ .|-.|.+||++... .++.
T Consensus 263 --------------------------n~lfsGaRk~dkIl~WDiR~~~----------------------------~pv~ 288 (406)
T KOG2919|consen 263 --------------------------NKLFSGARKDDKILCWDIRYSR----------------------------DPVY 288 (406)
T ss_pred --------------------------CeecccccCCCeEEEEeehhcc----------------------------chhh
Confidence 5677766 47899999998522 1222
Q ss_pred cccCCCC---CeeEEEeCCCCCEEEEEecCCeEEEEECCC-CceEEEEecCCCCeEEEEEccCCCcEEEEEeC
Q 048801 540 RLLPTPR---GVNMIVWSLDNRFVLAAIMDCRICVWNAVD-GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGY 608 (1715)
Q Consensus 540 ~l~~h~~---~VtslafSPDG~~LaTgs~DGtI~IWDl~s-g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~ 608 (1715)
.+..|.. .-.-....|+|++|++|+.||.|++||+.+ |..+..+..|...|+.++++| --.++++++.
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP-~mpilatssG 360 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNP-IMPILATSSG 360 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCc-ccceeeeccC
Confidence 2222322 112345568999999999999999999998 777888999999999999999 4567766653
No 180
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.68 E-value=1.8e-15 Score=180.63 Aligned_cols=277 Identities=15% Similarity=0.195 Sum_probs=214.7
Q ss_pred CeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcc
Q 048801 287 DITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSP 366 (1715)
Q Consensus 287 ~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~ 366 (1715)
.|..++|-|||..|+.+..+ .+.|||..+|..+.++++|...|+|++|+.+|. .+++|+.|..|.+|.-.-...
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGk---rFASG~aDK~VI~W~~klEG~-- 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK---RFASGSADKSVIIWTSKLEGI-- 87 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCc---eeccCCCceeEEEecccccce--
Confidence 79999999999988777544 799999999999999999999999999999998 899999999999997532111
Q ss_pred eecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecC
Q 048801 367 RIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSG 446 (1715)
Q Consensus 367 ~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~g 446 (1715)
....|+..|.|+.|+|-...|++++- ...-+|......+ .. ..
T Consensus 88 -------------------------LkYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V----------~K-~k 130 (1081)
T KOG1538|consen 88 -------------------------LKYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSV----------SK-HK 130 (1081)
T ss_pred -------------------------eeeccCCeeeEeecCchHHHhhhcch-hhccccChhhhhH----------Hh-hh
Confidence 12346788999999999999998875 3456887754221 11 11
Q ss_pred CCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCC
Q 048801 447 HENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPP 526 (1715)
Q Consensus 447 H~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~ 526 (1715)
....|.+.+|..+| .+|+.|-.+|+|.|-+-....
T Consensus 131 ss~R~~~CsWtnDG--------------------------qylalG~~nGTIsiRNk~gEe------------------- 165 (1081)
T KOG1538|consen 131 SSSRIICCSWTNDG--------------------------QYLALGMFNGTISIRNKNGEE------------------- 165 (1081)
T ss_pred hheeEEEeeecCCC--------------------------cEEEEeccCceEEeecCCCCc-------------------
Confidence 23468889999887 799999999999997433210
Q ss_pred CCCCCCCCCCCcccccCCCCCeeEEEeCCCC-----CEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCc
Q 048801 527 PLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN-----RFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPR 601 (1715)
Q Consensus 527 ~~~~~~~~g~~~~~l~~h~~~VtslafSPDG-----~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~ 601 (1715)
...+.+--+...+|.+++|+|.. ..+++.....++.++.+ +|+.+..-+.-.-.-.|+.+.+ +|.
T Consensus 166 --------k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~-NGE 235 (1081)
T KOG1538|consen 166 --------KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFT-NGE 235 (1081)
T ss_pred --------ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheecc-CCc
Confidence 11122333456789999999853 47888888888888886 4555553333333446888888 777
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 602 IAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 602 lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
+++.||.|+.+.+|. +.|-.+.++-.....|+.++..|++++++.|+.||+|-.|++...
T Consensus 236 y~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 236 YILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred EEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence 888899999999997 578888888766778999999999999999999999999998543
No 181
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.5e-15 Score=172.15 Aligned_cols=281 Identities=17% Similarity=0.273 Sum_probs=207.5
Q ss_pred CEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCc
Q 048801 298 TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAI 377 (1715)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i 377 (1715)
..+|++...|.|++||..++..+..+.++...++.+.|..... ...+.+|+.||+|++||++......++.....+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds-~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~--- 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDS-PHGVISCSSDGTVRLWDIRSQAESARISWTQQS--- 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCC-CCeeEEeccCCeEEEEEeecchhhhheeccCCC---
Confidence 5788888999999999999999999999999999999987531 127899999999999999987765554332111
Q ss_pred cCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC----CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeE
Q 048801 378 TGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS----DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNY 453 (1715)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~----DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~s 453 (1715)
+....|++.+..++.+++|+. +..|.+||++..+. + .-.....|.+.|++
T Consensus 117 -------------------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq-----~--l~~~~eSH~DDVT~ 170 (376)
T KOG1188|consen 117 -------------------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ-----L--LRQLNESHNDDVTQ 170 (376)
T ss_pred -------------------CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccc-----h--hhhhhhhccCccee
Confidence 345778888888889998863 67899999987531 1 12345689999999
Q ss_pred EEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCC
Q 048801 454 VQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPP 533 (1715)
Q Consensus 454 Lafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 533 (1715)
|.|+|.. ++.|++|+.||.|.|||+... .
T Consensus 171 lrFHP~~-------------------------pnlLlSGSvDGLvnlfD~~~d--------------------------~ 199 (376)
T KOG1188|consen 171 LRFHPSD-------------------------PNLLLSGSVDGLVNLFDTKKD--------------------------N 199 (376)
T ss_pred EEecCCC-------------------------CCeEEeecccceEEeeecCCC--------------------------c
Confidence 9999976 689999999999999998741 1
Q ss_pred CCCCcccccCCCCCeeEEEeCCCC-CEEEEEecCCeEEEEECCCCceEEEEecCC----------CCeEEEE-EccCCCc
Q 048801 534 RGGPRQRLLPTPRGVNMIVWSLDN-RFVLAAIMDCRICVWNAVDGSLVHSLTGHS----------ASSYVLD-VHPFNPR 601 (1715)
Q Consensus 534 ~g~~~~~l~~h~~~VtslafSPDG-~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~----------~~V~sLa-fSP~dg~ 601 (1715)
....+.....+...|.++.|..++ +.|.+-+...+..+|++..+.....+.... .--+-|. .+|-+..
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~ 279 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD 279 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence 223445566778889999999877 458888889999999999887655443210 0001121 2354555
Q ss_pred EEEEEeC-CCcEEEEEC---CC---CceEEEEEcccc-eEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 602 IAMSAGY-DGRTIVWDI---WE---GTPIRIYEIGRF-KLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 602 lLaSgs~-DGtI~VWDl---~t---gk~l~tl~~h~~-~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
+++.++. -|...++-+ .+ ++.+..+.+++. -|.++.|...+..|.+|++||.|.+|..
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 5555554 455555433 22 456667776444 4668889889999999999999999996
No 182
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.68 E-value=4.6e-15 Score=171.34 Aligned_cols=292 Identities=19% Similarity=0.219 Sum_probs=196.6
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC--------C--------CcEEEEecCCCCCeEEEEECC
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSME--------T--------AFCLASCRGHEGDITDLAVSS 295 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~--------t--------gk~l~tL~gHs~~VtsLafSp 295 (1715)
+.+.+..|.+|..+|++|.|+|+|.+||+|+++|.|.+|... + ......+.+|...|..++|++
T Consensus 54 ~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~ 133 (434)
T KOG1009|consen 54 KVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP 133 (434)
T ss_pred eEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC
Confidence 456678899999999999999999999999999999999765 2 234567889999999999999
Q ss_pred CCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCC
Q 048801 296 NNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPD 375 (1715)
Q Consensus 296 Dg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~ 375 (1715)
++.++++|+.|.++++||+..|..+..+..|...|..++|.|.+. ++++-+.|...+.+.+...+.+..+.......
T Consensus 134 d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q---yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~ 210 (434)
T KOG1009|consen 134 DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ---YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPA 210 (434)
T ss_pred CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhh---hhhhhccCcccceeeeeeeeeeeeeeeeEeee
Confidence 999999999999999999999999999999999999999999987 88999999888888776655444332111000
Q ss_pred CccCccCCCCCCCCCCCCCCCC----cceeEEEEccCCCeEEEecC----CCeE-----EEEeCCCCCccCCCCCceeee
Q 048801 376 AITGKSNVPSNNGPSSSNGLQS----HQILCCAYNANGTVFVTGSS----DTFA-----RVWSACKSSVEDSEQPIHELD 442 (1715)
Q Consensus 376 ~i~g~~~~~~~~~~~~~~~~h~----~~VtslafSpdG~~LatGs~----DG~I-----rVWDl~t~~~~~~~~~~~~l~ 442 (1715)
.. +. ..........|. .-...++|+|+|.+|++... .+.+ ++|+-.. ...++.
T Consensus 211 ~~-~~-----~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~--------l~rP~~ 276 (434)
T KOG1009|consen 211 KA-FN-----EREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKD--------LKRPAA 276 (434)
T ss_pred cc-cC-----CCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccc--------ccCcee
Confidence 00 00 000001111122 22567899999999998652 1111 2222110 011222
Q ss_pred eecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccccccccc
Q 048801 443 VLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLK 522 (1715)
Q Consensus 443 ~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~ 522 (1715)
.+.....++..+.|+| ..|.++.-.
T Consensus 277 ~lp~~~k~~lavr~~p----------------------------------------Vy~elrp~~--------------- 301 (434)
T KOG1009|consen 277 RLPSPKKPALAVRFSP----------------------------------------VYYELRPLS--------------- 301 (434)
T ss_pred ecCCCCcceEEEEeee----------------------------------------eEEEecccc---------------
Confidence 2333333333333333 112221100
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCeeEEEeC-CCCCEEEEEecCCeEEEEECCCCceEEEEe-cCCCCeEEEEEccCCC
Q 048801 523 VPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS-LDNRFVLAAIMDCRICVWNAVDGSLVHSLT-GHSASSYVLDVHPFNP 600 (1715)
Q Consensus 523 ~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS-PDG~~LaTgs~DGtI~IWDl~sg~~l~tL~-gH~~~V~sLafSP~dg 600 (1715)
....-|+ |-+-.+|+++ ...|+|||..+..++.... -|-..++.++|++ ++
T Consensus 302 -------------------------~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~-dg 354 (434)
T KOG1009|consen 302 -------------------------SEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSD-DG 354 (434)
T ss_pred -------------------------ccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecC-CC
Confidence 0000111 3333445555 4589999999988877664 5889999999999 77
Q ss_pred cEEEEEeCCCcEEEEECCCCce
Q 048801 601 RIAMSAGYDGRTIVWDIWEGTP 622 (1715)
Q Consensus 601 ~lLaSgs~DGtI~VWDl~tgk~ 622 (1715)
..|+..+.||..-+-.+...++
T Consensus 355 ~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 355 SVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred cEEEEeccCCceEEEEEcchhc
Confidence 7777889999887777655443
No 183
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=8.9e-15 Score=183.39 Aligned_cols=285 Identities=18% Similarity=0.236 Sum_probs=209.9
Q ss_pred CeeEEEECCCC-CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCC
Q 048801 307 FVIRVWRLPDG-LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 307 GtIrVWDl~tg-~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
+.+.||++.+. .+-..+. -...|+|+.|+|.... +|+.|+.+|.|.+||++.+.....
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~--ll~gG~y~GqV~lWD~~~~~~~~~------------------ 280 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPN--LLAGGCYNGQVVLWDLRKGSDTPP------------------ 280 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcc--eEEeeccCceEEEEEccCCCCCCC------------------
Confidence 47999999876 4444454 5678999999998875 789999999999999987764221
Q ss_pred CCCCCCCCCCCCcceeEEEEccCCC--eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeec------CCCCCeeEEEEc
Q 048801 386 NNGPSSSNGLQSHQILCCAYNANGT--VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS------GHENDVNYVQFS 457 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSpdG~--~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~------gH~~~V~sLafs 457 (1715)
.........|...++.+.|..+.. -|++++.||.|..|+++.-....... +..... .....++++.|.
T Consensus 281 -s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~---~~~~~~~~~~~~~~~~~~t~~~F~ 356 (555)
T KOG1587|consen 281 -SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGL---LLESKKHKGQQSSKAVGATSLKFE 356 (555)
T ss_pred -cccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhc---ccccccccccccccccceeeEeec
Confidence 111233455778899999976543 48999999999999887543211111 111111 223467788887
Q ss_pred cCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCC
Q 048801 458 GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP 537 (1715)
Q Consensus 458 pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 537 (1715)
+.. ...|+.|+.+|.|..-+-...+.. . ......
T Consensus 357 ~~~-------------------------p~~FiVGTe~G~v~~~~r~g~~~~---------~------------~~~~~~ 390 (555)
T KOG1587|consen 357 PTD-------------------------PNHFIVGTEEGKVYKGCRKGYTPA---------P------------EVSYKG 390 (555)
T ss_pred cCC-------------------------CceEEEEcCCcEEEEEeccCCccc---------c------------cccccc
Confidence 754 578999999999877332211100 0 011123
Q ss_pred cccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECC-CCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 538 RQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV-DGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 538 ~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~-sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
......|.+.|+++.++|-+..++..+.|.+|+||... ...++..+..+...|++++|||..+.+++++..||.|.|||
T Consensus 391 ~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD 470 (555)
T KOG1587|consen 391 HSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD 470 (555)
T ss_pred cccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence 44567789999999999988877766669999999988 77788888888888999999998889999999999999999
Q ss_pred CCC--CceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 617 IWE--GTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 617 l~t--gk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
+.. ..++.+...+......+.|++.|+.|++|+..|.+++|++...
T Consensus 471 Ll~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 471 LLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred hhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 964 3556666555555667899999999999999999999999654
No 184
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.8e-15 Score=171.48 Aligned_cols=287 Identities=13% Similarity=0.156 Sum_probs=197.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECC--CCCEEEEEeCCCeeEEEECCCCCceEEE--eCCC-CCe
Q 048801 256 RFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS--NNTLVASASNDFVIRVWRLPDGLPISVL--RGHT-GAV 330 (1715)
Q Consensus 256 ~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSp--Dg~lLASGS~DGtIrVWDl~tg~~l~~L--~gH~-~~V 330 (1715)
..+|++-..|.|+|||..+++.+..+++|...+..+.|.. ....|.+|+.||+|++||++.......+ ..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688888999999999999999999999999999999987 4578999999999999999887655444 4455 456
Q ss_pred EEEEecCCCCcceEEEEec----CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEc
Q 048801 331 TAIAFSPRPSAIYQLLSSS----DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYN 406 (1715)
Q Consensus 331 tsLafSPdg~~~~~LaSgS----~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafS 406 (1715)
.|++..-... .+++|. .+..|.+||++..+... ......|...|+++.|+
T Consensus 121 ~~ld~nck~~---ii~~GtE~~~s~A~v~lwDvR~~qq~l-----------------------~~~~eSH~DDVT~lrFH 174 (376)
T KOG1188|consen 121 ICLDLNCKKN---IIACGTELTRSDASVVLWDVRSEQQLL-----------------------RQLNESHNDDVTQLRFH 174 (376)
T ss_pred eEeeccCcCC---eEEeccccccCceEEEEEEeccccchh-----------------------hhhhhhccCcceeEEec
Confidence 6777664544 566654 36789999998766421 12234578889999999
Q ss_pred cC-CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCccc
Q 048801 407 AN-GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFC 485 (1715)
Q Consensus 407 pd-G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~ 485 (1715)
|. .++|++|+.||.|.|||+....- ...+...-.|...|.++.|...+
T Consensus 175 P~~pnlLlSGSvDGLvnlfD~~~d~E------eDaL~~viN~~sSI~~igw~~~~------------------------- 223 (376)
T KOG1188|consen 175 PSDPNLLLSGSVDGLVNLFDTKKDNE------EDALLHVINHGSSIHLIGWLSKK------------------------- 223 (376)
T ss_pred CCCCCeEEeecccceEEeeecCCCcc------hhhHHHhhcccceeeeeeeecCC-------------------------
Confidence 95 58999999999999999975421 11233334577789999999876
Q ss_pred CceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEec
Q 048801 486 HDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM 565 (1715)
Q Consensus 486 ~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~ 565 (1715)
.+.|.+-+..++..+|++..+............ .........-..-|.+.. ..+..+.++++.
T Consensus 224 ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~----------------~~d~r~~~~~dY~I~~~~-~~~~~~~~l~g~ 286 (376)
T KOG1188|consen 224 YKRIMCLTHMETFAIYELEDGSEETWLENPDVS----------------ADDLRKEDNCDYVINEHS-PGDKDTCALAGT 286 (376)
T ss_pred cceEEEEEccCceeEEEccCCChhhcccCccch----------------hhhHHhhhhhhheeeccc-CCCcceEEEecc
Confidence 368999999999999999876532221110000 000000011111122221 123444444444
Q ss_pred -CCeEEEEECC---C---CceEEEEec-CCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 566 -DCRICVWNAV---D---GSLVHSLTG-HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 566 -DGtI~IWDl~---s---g~~l~tL~g-H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
-+...++-+. + ++.+..+.+ |..-|.++.|.. .+.++.|||.||.+.+|..
T Consensus 287 ~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~-~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 287 DSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDV-KNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhc-ccceeeccCCCceEEEEec
Confidence 4555554432 2 345566666 677788888865 6789999999999999986
No 185
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.67 E-value=1.5e-15 Score=166.81 Aligned_cols=304 Identities=14% Similarity=0.168 Sum_probs=204.9
Q ss_pred EEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe-CCCCCeEEEEecCCCCcceEEEEecCCCcEE
Q 048801 277 CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR-GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355 (1715)
Q Consensus 277 ~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~-gH~~~VtsLafSPdg~~~~~LaSgS~DGtVr 355 (1715)
+...|++|.+.|+++.|-.+++ |.+|..-|.|++|++.+...+..++ .|...|+.+...|++ .|.+-+.|+.+.
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d----~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND----SLDTQGRDPLLI 80 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc----chhhcCCCceEE
Confidence 4567889999999999988775 8899999999999999998888888 577889999999985 589999999999
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC-eEEEEeCCCCCc---
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT-FARVWSACKSSV--- 431 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG-~IrVWDl~t~~~--- 431 (1715)
+|++..+..+..-.. .+.++.|++-. ++..+... .+..|+-+....
T Consensus 81 lw~ia~s~~i~i~Si----------------------------~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde~h~ 130 (323)
T KOG0322|consen 81 LWTIAYSAFISIHSI----------------------------VVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDETHK 130 (323)
T ss_pred EEEccCcceEEEeee----------------------------eccccccccce--eccCCCcchhheecCCcccchhhh
Confidence 999987554332211 12222222210 11111100 111111110000
Q ss_pred cCCCCCceeee----eecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCc
Q 048801 432 EDSEQPIHELD----VLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 507 (1715)
Q Consensus 432 ~~~~~~~~~l~----~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~ 507 (1715)
.+...+ ..+. .-.+..+.+.|..+.-.- -..-.++.|..+|.+.+||+.++.
T Consensus 131 ~D~g~~-tqv~i~dd~~~~Klgsvmc~~~~~~c-----------------------~s~~lllaGyEsghvv~wd~S~~~ 186 (323)
T KOG0322|consen 131 QDGGDT-TQVQIADDSERSKLGSVMCQDKDHAC-----------------------GSTFLLLAGYESGHVVIWDLSTGD 186 (323)
T ss_pred hccCcc-ceeEccCchhccccCceeeeeccccc-----------------------cceEEEEEeccCCeEEEEEccCCc
Confidence 000000 0000 001222344444322110 012467889999999999999753
Q ss_pred cCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC--Cce--EEEE
Q 048801 508 SHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD--GSL--VHSL 583 (1715)
Q Consensus 508 ~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s--g~~--l~tL 583 (1715)
..-.+. ...........|..+|.++.|.+.-..=++|+.+..+..|++.. +.+ ...+
T Consensus 187 ~~~~~~-------------------~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~ 247 (323)
T KOG0322|consen 187 KIIQLP-------------------QSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI 247 (323)
T ss_pred eeeccc-------------------cccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceE
Confidence 221110 01122334556888999999987666667788888888998854 222 2223
Q ss_pred ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 584 TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 584 ~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
.-....|..+..-| |++++||+|.||+|+||+.++..+++.+..|.+.|.+++|+||...+|+++.|++|.+|++
T Consensus 248 ~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 248 TLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 33345578888989 8899999999999999999999999999999999999999999999999999999999986
No 186
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.66 E-value=4.9e-15 Score=164.21 Aligned_cols=279 Identities=20% Similarity=0.273 Sum_probs=196.9
Q ss_pred EEEcCCCCCeEEEEEcC-CCCEEEEEeCC-------CcEEEEeCCC---------CcEEEEec-CCCCCeEEEEECCCCC
Q 048801 237 KKLRGHRDAVYCAIFDR-SGRFVITGSDD-------RLVKIWSMET---------AFCLASCR-GHEGDITDLAVSSNNT 298 (1715)
Q Consensus 237 ~~L~GH~~~Vt~VafSp-DG~~LaTGS~D-------GtIrIWDl~t---------gk~l~tL~-gHs~~VtsLafSpDg~ 298 (1715)
+.|..|.+.|..++-+| +.++|+|+-.+ ..+.||.+.. .+++..|. .+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 45778999999999999 45566666432 2478998743 23444454 4667999999999999
Q ss_pred EEEEEeCCCeeEEEECCCCCc-eEEEe-----CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCC
Q 048801 299 LVASASNDFVIRVWRLPDGLP-ISVLR-----GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPK 372 (1715)
Q Consensus 299 lLASGS~DGtIrVWDl~tg~~-l~~L~-----gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~ 372 (1715)
.||+-. |..|.+|++..+.. ++.+. +|....++-+|+|.... ..+....|+++..||+++......+
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg--nqv~tt~d~tl~~~D~RT~~~~~sI---- 209 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG--NQVATTSDSTLQFWDLRTMKKNNSI---- 209 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc--ceEEEeCCCcEEEEEccchhhhcch----
Confidence 998876 78999999988765 44432 35667888899995432 2344556899999999977644332
Q ss_pred CCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCe
Q 048801 373 PPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDV 451 (1715)
Q Consensus 373 ~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V 451 (1715)
...|...|..+.|+|+.+ +||+|+.||.|+|||.+.. ..++..+.+|...|
T Consensus 210 --------------------~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--------k~pv~el~~HsHWv 261 (370)
T KOG1007|consen 210 --------------------EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--------KFPVQELPGHSHWV 261 (370)
T ss_pred --------------------hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--------CccccccCCCceEE
Confidence 345677899999999875 6889999999999999864 34678899999999
Q ss_pred eEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCC
Q 048801 452 NYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQ 531 (1715)
Q Consensus 452 ~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~ 531 (1715)
.++.|+|.. ..+|++|+.|..|.+|...+-.....+..-................
T Consensus 262 W~VRfn~~h-------------------------dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~k 316 (370)
T KOG1007|consen 262 WAVRFNPEH-------------------------DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVK 316 (370)
T ss_pred EEEEecCcc-------------------------ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcc
Confidence 999999965 5789999999999999765422111110000000000000000111
Q ss_pred CCCCCCcccccCCCCCeeEEEeCCCCCE-EEEEecCCeEEEEECC
Q 048801 532 PPRGGPRQRLLPTPRGVNMIVWSLDNRF-VLAAIMDCRICVWNAV 575 (1715)
Q Consensus 532 ~~~g~~~~~l~~h~~~VtslafSPDG~~-LaTgs~DGtI~IWDl~ 575 (1715)
+...+.+.++..|...|.+++||.-..+ +|+-+.||++.|=.+.
T Consensus 317 pL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 317 PLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 2344566778899999999999986665 5667889999886653
No 187
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.3e-13 Score=172.44 Aligned_cols=280 Identities=23% Similarity=0.328 Sum_probs=182.8
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCC---CEEEEEeCCCeeEEEECC
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNN---TLVASASNDFVIRVWRLP 315 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg---~lLASGS~DGtIrVWDl~ 315 (1715)
|-|-...-..-.|++|+++++.... ..|+||.+.||.++..+.+|..+++.+.+.|.. .++++++.||.|++||..
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred eccccceecccccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 3333333344569999999987764 589999999999999999999999999998854 477899999999999999
Q ss_pred CCCceEEEeCCCCCeEEEEecCCCCcceEEE-EecCC------------CcEEEEecCCC-----CCcceecCCCC----
Q 048801 316 DGLPISVLRGHTGAVTAIAFSPRPSAIYQLL-SSSDD------------GTCRIWDARYS-----QYSPRIYLPKP---- 373 (1715)
Q Consensus 316 tg~~l~~L~gH~~~VtsLafSPdg~~~~~La-SgS~D------------GtVrIWDl~tg-----~~l~~i~~~~~---- 373 (1715)
.+..+.++..+ ..+..+.+.|..-....++ .+..| +.++-+.+.+. ........+..
T Consensus 91 ~~~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~ 169 (792)
T KOG1963|consen 91 DGELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDN 169 (792)
T ss_pred CcEEEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEc
Confidence 99988888643 3344444422110000111 11111 11111111110 00000000000
Q ss_pred -CCCccC------c--cCCC---CCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceee
Q 048801 374 -PDAITG------K--SNVP---SNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHEL 441 (1715)
Q Consensus 374 -~~~i~g------~--~~~~---~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l 441 (1715)
.....+ . ...+ ...........|...++|.+++|+++++|+|..||.|.+|.-...+ ......
T Consensus 170 ~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~-----~~~~t~ 244 (792)
T KOG1963|consen 170 NSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS-----DDSETC 244 (792)
T ss_pred CCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccc-----cccccc
Confidence 000000 0 0000 0011122223445558999999999999999999999999765411 112234
Q ss_pred eeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccc
Q 048801 442 DVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHL 521 (1715)
Q Consensus 442 ~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l 521 (1715)
..+.-|.+.|++++|+++| .+|++|+..|.+.+|.+.++.
T Consensus 245 t~lHWH~~~V~~L~fS~~G--------------------------~~LlSGG~E~VLv~Wq~~T~~-------------- 284 (792)
T KOG1963|consen 245 TLLHWHHDEVNSLSFSSDG--------------------------AYLLSGGREGVLVLWQLETGK-------------- 284 (792)
T ss_pred eEEEecccccceeEEecCC--------------------------ceEeecccceEEEEEeecCCC--------------
Confidence 6678899999999999997 799999999999999988743
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEE
Q 048801 522 KVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVH 581 (1715)
Q Consensus 522 ~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~ 581 (1715)
.+-+..-...|..+.+|||+.+.+....|..|.+....+.+...
T Consensus 285 ----------------kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~ 328 (792)
T KOG1963|consen 285 ----------------KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS 328 (792)
T ss_pred ----------------cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh
Confidence 11223345679999999999999999999999999886654433
No 188
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.1e-14 Score=165.76 Aligned_cols=302 Identities=15% Similarity=0.169 Sum_probs=218.9
Q ss_pred EEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC------CCceEEEe-CCCCCeEEEEecCCCCcceEEEEec
Q 048801 277 CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD------GLPISVLR-GHTGAVTAIAFSPRPSAIYQLLSSS 349 (1715)
Q Consensus 277 ~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t------g~~l~~L~-gH~~~VtsLafSPdg~~~~~LaSgS 349 (1715)
+.+.+.+|.+.|.+|.||.++++||+|+.|..++||.++. .+++.... .|...|.||+|.-.+. .|++|+
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~---~~~SG~ 124 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR---FLYSGE 124 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe---eEecCC
Confidence 3445678999999999999999999999999999999853 45665554 3558999999998876 899999
Q ss_pred CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCC
Q 048801 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 350 ~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~ 429 (1715)
.+++|.+.|+.+.+.+..... ....+.|..+..+|..+.|++.+.+|.|.+||.+..
T Consensus 125 ~~~~VI~HDiEt~qsi~V~~~-----------------------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~ 181 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIYVANE-----------------------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR 181 (609)
T ss_pred CcceeEeeecccceeeeeecc-----------------------cCcccceeecccCCCCceEEEEecCceEEEEeccCC
Confidence 999999999998765443321 112346899999999999999999999999999864
Q ss_pred CccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccC
Q 048801 430 SVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH 509 (1715)
Q Consensus 430 ~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~ 509 (1715)
. .++. +..+.........+.|+|.. +.+|++.+..|-+-+||.+..+..
T Consensus 182 ~-----~~~~-~~~~AN~~~~F~t~~F~P~~-------------------------P~Li~~~~~~~G~~~~D~R~~~~~ 230 (609)
T KOG4227|consen 182 Q-----NPIS-LVLPANSGKNFYTAEFHPET-------------------------PALILVNSETGGPNVFDRRMQARP 230 (609)
T ss_pred C-----CCCc-eeeecCCCccceeeeecCCC-------------------------ceeEEeccccCCCCceeeccccch
Confidence 2 1222 22233344466777888865 578999999999999999853210
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCC--
Q 048801 510 GKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHS-- 587 (1715)
Q Consensus 510 ~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~-- 587 (1715)
.+. ......+......-..+.|+|+|..|++--....-.+||+-+.++...-..|.
T Consensus 231 --------~~~--------------~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~ 288 (609)
T KOG4227|consen 231 --------VYQ--------------RSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPN 288 (609)
T ss_pred --------HHh--------------hhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCC
Confidence 000 00001111112233567899999998877666666678887654432222232
Q ss_pred -----CCeEEEEEccCCCcEEEEEeCCCcEEEEECCC----------C-------------ceEEEEEcccceEEEEEEc
Q 048801 588 -----ASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE----------G-------------TPIRIYEIGRFKLVDGKFS 639 (1715)
Q Consensus 588 -----~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t----------g-------------k~l~tl~~h~~~V~svafS 639 (1715)
..+.+++|- +.+-+++|+.+-.|++|.+.. | +.+..+.+|..-+..|.|+
T Consensus 289 GY~N~~T~KS~~F~--~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~ 366 (609)
T KOG4227|consen 289 GYCNIKTIKSMTFI--DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFS 366 (609)
T ss_pred cceeeeeeeeeeee--cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeec
Confidence 245667774 456689999999999998742 1 2356778888888999999
Q ss_pred CCCCEEEEEeCCCeEEEEEC
Q 048801 640 PDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 640 PDG~~LAsgs~DG~I~IWdl 659 (1715)
|...+|++.+-...++||.-
T Consensus 367 ~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 367 QHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred CCcceEeccchhhheecccc
Confidence 99999999999999999974
No 189
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=1.7e-15 Score=177.56 Aligned_cols=329 Identities=19% Similarity=0.312 Sum_probs=236.6
Q ss_pred ccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEe-cCCCCCeEEEEECC--CCCEEEEE
Q 048801 227 STMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASC-RGHEGDITDLAVSS--NNTLVASA 303 (1715)
Q Consensus 227 ~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL-~gHs~~VtsLafSp--Dg~lLASG 303 (1715)
...++.+.+...|.+|.+.|..|.|...|..|++||+|..|.+||+..+.....+ .||...|....|-| +...|+++
T Consensus 126 ~~~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~ 205 (559)
T KOG1334|consen 126 RLFVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTS 205 (559)
T ss_pred HHHHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceec
Confidence 3456677888899999999999999999999999999999999999988877665 57999998888987 45789999
Q ss_pred eCCCeeEEEECCC-CCc--eEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCc
Q 048801 304 SNDFVIRVWRLPD-GLP--ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGK 380 (1715)
Q Consensus 304 S~DGtIrVWDl~t-g~~--l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~ 380 (1715)
+.||.|++=.+.. +.+ ...+..|.+.|..++.-|+... .|.+++.|+.+.-+|++.+.....+......
T Consensus 206 s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~--~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~------ 277 (559)
T KOG1334|consen 206 SRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK--PFLSCGEDAVVFHIDLRQDVPAEKFVCREAD------ 277 (559)
T ss_pred cccCceeeeeeccccceecceecccccCccceeeecCCCCC--cccccccccceeeeeeccCCccceeeeeccC------
Confidence 9999999987653 322 3456679999999999998875 7999999999999999876543333211100
Q ss_pred cCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCce---eeeeecCCCCCeeEEEE
Q 048801 381 SNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIH---ELDVLSGHENDVNYVQF 456 (1715)
Q Consensus 381 ~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~---~l~~l~gH~~~V~sLaf 456 (1715)
....-....++..|.. ..+++|+.|-.+++||.+.-.......+.. +-.......-.|++++|
T Consensus 278 -------------~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Y 344 (559)
T KOG1334|consen 278 -------------EKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVY 344 (559)
T ss_pred -------------CccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEe
Confidence 0001246788888865 489999999999999997643211111000 00111122346899999
Q ss_pred ccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCC
Q 048801 457 SGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGG 536 (1715)
Q Consensus 457 spdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~ 536 (1715)
+.++ .-|++...|-.|+++.-.-+. + ..+.+..+....
T Consensus 345 sh~~--------------------------sElLaSYnDe~IYLF~~~~~~--G--------------~~p~~~s~~~~~ 382 (559)
T KOG1334|consen 345 SHDG--------------------------SELLASYNDEDIYLFNKSMGD--G--------------SEPDPSSPREQY 382 (559)
T ss_pred cCCc--------------------------cceeeeecccceEEecccccc--C--------------CCCCCCcchhhc
Confidence 9765 455566677788888433211 0 000000100011
Q ss_pred CcccccCCCC--CeeEEE-eCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 048801 537 PRQRLLPTPR--GVNMIV-WSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTI 613 (1715)
Q Consensus 537 ~~~~l~~h~~--~Vtsla-fSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~ 613 (1715)
....+.+|.. .|.++- |-|...|+++|+.-|.|.||+-.+++.+..+.+....|+||.-||.. -+||++|-|.-|+
T Consensus 383 ~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~-PvLAsSGid~DVK 461 (559)
T KOG1334|consen 383 VKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHL-PVLASSGIDHDVK 461 (559)
T ss_pred cchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCC-chhhccCCcccee
Confidence 1122455543 366665 45888999999999999999999999999999888899999999954 5788999999999
Q ss_pred EEECCC
Q 048801 614 VWDIWE 619 (1715)
Q Consensus 614 VWDl~t 619 (1715)
||...+
T Consensus 462 IWTP~~ 467 (559)
T KOG1334|consen 462 IWTPLT 467 (559)
T ss_pred eecCCc
Confidence 998643
No 190
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=3.7e-14 Score=177.55 Aligned_cols=288 Identities=16% Similarity=0.247 Sum_probs=206.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCC---CCCeEEEEECC--CCCEEEEEeCCCeeEEEEC-CCC-
Q 048801 245 AVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGH---EGDITDLAVSS--NNTLVASASNDFVIRVWRL-PDG- 317 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gH---s~~VtsLafSp--Dg~lLASGS~DGtIrVWDl-~tg- 317 (1715)
.-..+.|+|-...|+++.+.-.|+|||.+.++.+..+..+ ...|+.+.+-. |..+|++|+.||.|+||+- .++
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 3456778888889999987789999999999998777644 34788888864 5679999999999999963 222
Q ss_pred ---CceEEEeCC-------CCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 318 ---LPISVLRGH-------TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 318 ---~~l~~L~gH-------~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
+.+..+.+- .+.-.-+.|....+ +|+++|.-..|+|||.........+...
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G---~Ll~tGd~r~IRIWDa~~E~~~~diP~~---------------- 1206 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG---HLLVTGDVRSIRIWDAHKEQVVADIPYG---------------- 1206 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCC---eEEecCCeeEEEEEecccceeEeecccC----------------
Confidence 223222211 11113346666655 6778777899999999876554333211
Q ss_pred CCCCCCCCCCcceeEEEEc-cCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCC--eeEEEEccCccccc
Q 048801 388 GPSSSNGLQSHQILCCAYN-ANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEND--VNYVQFSGCAVASR 464 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafS-pdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~--V~sLafspdg~as~ 464 (1715)
...-|+++.-+ ..|+.|++|..||.|++||.+.... ...+.....|+.. |..+.+.+.|.
T Consensus 1207 --------s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~------ds~v~~~R~h~~~~~Iv~~slq~~G~--- 1269 (1387)
T KOG1517|consen 1207 --------SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP------DSLVCVYREHNDVEPIVHLSLQRQGL--- 1269 (1387)
T ss_pred --------CCccceeecccccCCceEEEeecCCceEEeecccCCc------cccceeecccCCcccceeEEeecCCC---
Confidence 12235555433 3579999999999999999986432 2356677888887 99999988772
Q ss_pred ccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCC
Q 048801 465 SAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPT 544 (1715)
Q Consensus 465 ~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h 544 (1715)
..|++|+.||.|.+||++...... ...+..|
T Consensus 1270 ----------------------~elvSgs~~G~I~~~DlR~~~~e~---------------------------~~~iv~~ 1300 (1387)
T KOG1517|consen 1270 ----------------------GELVSGSQDGDIQLLDLRMSSKET---------------------------FLTIVAH 1300 (1387)
T ss_pred ----------------------cceeeeccCCeEEEEecccCcccc---------------------------cceeeec
Confidence 479999999999999998621000 0011111
Q ss_pred ---CCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec-------CCCCeEEEEEccCCCcEEEEEeCCCcEEE
Q 048801 545 ---PRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG-------HSASSYVLDVHPFNPRIAMSAGYDGRTIV 614 (1715)
Q Consensus 545 ---~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g-------H~~~V~sLafSP~dg~lLaSgs~DGtI~V 614 (1715)
.+.++++..+++...||+|+. +.|.||++ .|+.+..++. ..+.+.|++||| ..-++|+|..|.+|.|
T Consensus 1301 ~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHEHAPIIASGSA-QLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSI 1377 (1387)
T ss_pred cccCccceeeeeccCCCeeeecCc-ceEEEEec-ChhhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEE
Confidence 124899999999999999998 99999997 4555555442 245679999999 6678888999999999
Q ss_pred EECCCC
Q 048801 615 WDIWEG 620 (1715)
Q Consensus 615 WDl~tg 620 (1715)
|....+
T Consensus 1378 Ys~~k~ 1383 (1387)
T KOG1517|consen 1378 YSCEKP 1383 (1387)
T ss_pred eecCCc
Confidence 987554
No 191
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.61 E-value=1e-13 Score=173.97 Aligned_cols=285 Identities=17% Similarity=0.210 Sum_probs=197.6
Q ss_pred CCcEEEEeCCCC-cEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCeeEEEECCCCCc--eEE----EeCCCCCeEEEEe
Q 048801 264 DRLVKIWSMETA-FCLASCRGHEGDITDLAVSS-NNTLVASASNDFVIRVWRLPDGLP--ISV----LRGHTGAVTAIAF 335 (1715)
Q Consensus 264 DGtIrIWDl~tg-k~l~tL~gHs~~VtsLafSp-Dg~lLASGS~DGtIrVWDl~tg~~--l~~----L~gH~~~VtsLaf 335 (1715)
++.+.||++... ..-..+. ....|+|++|+| +..+||.|+.+|.|.+||+..+.. ... ...|..+|+.+.|
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred CceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 358999999876 3334444 577899999999 567888999999999999987654 222 2368899999999
Q ss_pred cCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEE
Q 048801 336 SPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVT 414 (1715)
Q Consensus 336 SPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG~~Lat 414 (1715)
..+-.. .-+++++.||.|..|+++.-.......... ..............+++++|.+ +-..|++
T Consensus 300 ~~~~~~-~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~-------------~~~~~~~~~~~~~~~t~~~F~~~~p~~FiV 365 (555)
T KOG1587|consen 300 LQNEHN-TEFFSLSSDGSICSWDTDMLSLPVEGLLLE-------------SKKHKGQQSSKAVGATSLKFEPTDPNHFIV 365 (555)
T ss_pred eccCCC-CceEEEecCCcEeeeeccccccchhhcccc-------------cccccccccccccceeeEeeccCCCceEEE
Confidence 876553 358999999999999876433211100000 0000111223355689999988 4478999
Q ss_pred ecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcC
Q 048801 415 GSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR 494 (1715)
Q Consensus 415 Gs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~ 494 (1715)
|+.+|.|..-......... ....+.+..+..|.++|.++.++|-+ +..|++++
T Consensus 366 GTe~G~v~~~~r~g~~~~~-~~~~~~~~~~~~h~g~v~~v~~nPF~-------------------------~k~fls~g- 418 (555)
T KOG1587|consen 366 GTEEGKVYKGCRKGYTPAP-EVSYKGHSTFITHIGPVYAVSRNPFY-------------------------PKNFLSVG- 418 (555)
T ss_pred EcCCcEEEEEeccCCcccc-cccccccccccccCcceEeeecCCCc-------------------------cceeeeec-
Confidence 9999998763333221100 01112344667789999999999854 56677776
Q ss_pred CCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC-CEEEEEecCCeEEEEE
Q 048801 495 DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN-RFVLAAIMDCRICVWN 573 (1715)
Q Consensus 495 DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG-~~LaTgs~DGtI~IWD 573 (1715)
|.+++||.... ...++..+..+...|++++|||-. ..++++..||.|.|||
T Consensus 419 DW~vriWs~~~----------------------------~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD 470 (555)
T KOG1587|consen 419 DWTVRIWSEDV----------------------------IASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD 470 (555)
T ss_pred cceeEeccccC----------------------------CCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence 99999997652 122344445556669999999965 4667778899999999
Q ss_pred CCC--CceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC
Q 048801 574 AVD--GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 574 l~s--g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t 619 (1715)
+.. ..++.+..-+....+.+.|++ .+++|++|...|+|.+|++..
T Consensus 471 Ll~~~~~Pv~s~~~~~~~l~~~~~s~-~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 471 LLQDDEEPVLSQKVCSPALTRVRWSP-NGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred hhccccCCcccccccccccceeecCC-CCcEEEEecCCCcEEEEEcCc
Confidence 954 345555555555566677776 789999999999999999853
No 192
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.61 E-value=8e-14 Score=177.40 Aligned_cols=321 Identities=17% Similarity=0.199 Sum_probs=213.2
Q ss_pred ccceeEEEEcCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCC-------CcEEEEecCCCCCeEEEEECCCCCEEEE
Q 048801 231 QKMQNIKKLRGHRDAVYCAIFDRSG-RFVITGSDDRLVKIWSMET-------AFCLASCRGHEGDITDLAVSSNNTLVAS 302 (1715)
Q Consensus 231 ~~~k~l~~L~GH~~~Vt~VafSpDG-~~LaTGS~DGtIrIWDl~t-------gk~l~tL~gHs~~VtsLafSpDg~lLAS 302 (1715)
..+..++.|..|...|..++.++.. .+++|||.||+|+||++.. .+...++..-.+.+.++.+.+.+..+|+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence 4677899999999999999988654 9999999999999999753 1333444445778999999999999999
Q ss_pred EeCCCeeEEEECCCC--C-----ceEEEeCC-CC-CeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCC
Q 048801 303 ASNDFVIRVWRLPDG--L-----PISVLRGH-TG-AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKP 373 (1715)
Q Consensus 303 GS~DGtIrVWDl~tg--~-----~l~~L~gH-~~-~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~ 373 (1715)
++.||.|++.+++.. . +.+....+ .+ .|..-+|...... ..|+.+...+.|..||++......++..
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S-~~lvy~T~~~~iv~~D~r~~~~~w~lk~--- 1191 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQS-HVLVYATDLSRIVSWDTRMRHDAWRLKN--- 1191 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccc-eeEEEEEeccceEEecchhhhhHHhhhc---
Confidence 999999999998752 1 11222212 23 3444455554443 2678888889999999987665444322
Q ss_pred CCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeE
Q 048801 374 PDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNY 453 (1715)
Q Consensus 374 ~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~s 453 (1715)
....+.|++++.+|.+.++++|+..|.+.+||++-+.. ....-..+..+|..
T Consensus 1192 --------------------~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~--------i~sw~~P~~~~i~~ 1243 (1431)
T KOG1240|consen 1192 --------------------QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP--------ILSWEHPARAPIRH 1243 (1431)
T ss_pred --------------------CccccceeEEEecCCceEEEEecCCceEEEEEeecCce--------eecccCcccCCcce
Confidence 22345699999999999999999999999999975321 11122334467777
Q ss_pred EEEccCcccccccccccccccccccccCCcccCce-EEEEc-CCCeEEEEecCCCccCcccccccccccccCCCCCCCCC
Q 048801 454 VQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN-IVTCS-RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQ 531 (1715)
Q Consensus 454 Lafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~-LaSgS-~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~ 531 (1715)
+..+|-.. .... +.+++ ..+.|.+|++.++..... .|.. ...+.+...
T Consensus 1244 v~~~~~~~-----------------------~~S~~vs~~~~~~nevs~wn~~~g~~~~v--l~~s-----~~~p~ls~~ 1293 (1431)
T KOG1240|consen 1244 VWLCPTYP-----------------------QESVSVSAGSSSNNEVSTWNMETGLRQTV--LWAS-----DGAPILSYA 1293 (1431)
T ss_pred EEeeccCC-----------------------CCceEEEecccCCCceeeeecccCcceEE--EEcC-----CCCcchhhh
Confidence 77776420 0023 33344 578899999998743322 2221 011111111
Q ss_pred CCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceE-------------------------------
Q 048801 532 PPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLV------------------------------- 580 (1715)
Q Consensus 532 ~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l------------------------------- 580 (1715)
.+.. .. ...+.-.....++..-+.++++|+.|..|+.||.......
T Consensus 1294 ~Ps~--~~-~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e 1370 (1431)
T KOG1240|consen 1294 LPSN--DA-RKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDE 1370 (1431)
T ss_pred cccc--cC-CCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchh
Confidence 1111 00 0012222333444555678999999999999998542110
Q ss_pred -----------------EEE--------ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 581 -----------------HSL--------TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 581 -----------------~tL--------~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
..+ ..|..+|+++++......+|++++.||.|+||.
T Consensus 1371 ~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1371 FIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 000 147778889988876778999999999999993
No 193
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.60 E-value=8.4e-14 Score=156.57 Aligned_cols=365 Identities=15% Similarity=0.153 Sum_probs=218.2
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEE-eCCCeeEEEECCCCCceEEEeCCC
Q 048801 249 AIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASA-SNDFVIRVWRLPDGLPISVLRGHT 327 (1715)
Q Consensus 249 VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASG-S~DGtIrVWDl~tg~~l~~L~gH~ 327 (1715)
+.|||+|++||+++.- .+.|-|..+.+..+.+.. -..|.-|.|..|..+++++ ..|+.|.+|++...+-...+....
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 5699999999999865 888889888776555442 4567889999998776665 678899999999988888888888
Q ss_pred CCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc
Q 048801 328 GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA 407 (1715)
Q Consensus 328 ~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp 407 (1715)
.++.+++|+|+|+. .|.+...+-.|.+|.+.+..... ++.+ ...+..++|+|
T Consensus 92 agls~~~WSPdgrh--iL~tseF~lriTVWSL~t~~~~~---~~~p-----------------------K~~~kg~~f~~ 143 (447)
T KOG4497|consen 92 AGLSSISWSPDGRH--ILLTSEFDLRITVWSLNTQKGYL---LPHP-----------------------KTNVKGYAFHP 143 (447)
T ss_pred CcceeeeECCCcce--EeeeecceeEEEEEEeccceeEE---eccc-----------------------ccCceeEEECC
Confidence 99999999999974 67788889999999998755321 1111 11234555566
Q ss_pred CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccc----cc--cccccccccccC
Q 048801 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAM----SD--AFKEENVPKFKN 481 (1715)
Q Consensus 408 dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~----~~--~~~~~~~~~~~~ 481 (1715)
+|++.+..+.-.....+++.. .+....+..+.-.+-..+.+.|+|+|.....-. .. .+... ......
T Consensus 144 dg~f~ai~sRrDCkdyv~i~~------c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~-lG~k~v 216 (447)
T KOG4497|consen 144 DGQFCAILSRRDCKDYVQISS------CKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG-LGLKFV 216 (447)
T ss_pred CCceeeeeecccHHHHHHHHh------hHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeec-cceeEE
Confidence 655555443221111111100 000111122222223333444444431100000 00 00000 000001
Q ss_pred Cc-ccCceEEEEcCCCeEEEEecCCCccCccccccccc--------------------ccccCCCCCCCCC---------
Q 048801 482 SW-FCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRA--------------------YHLKVPPPPLPPQ--------- 531 (1715)
Q Consensus 482 s~-~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~--------------------~~l~~~~~~~~~~--------- 531 (1715)
.| .+..+|+.|+.|+.++|.+--+-+..+.+...... ..+...++.....
T Consensus 217 ~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~Y 296 (447)
T KOG4497|consen 217 EWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIY 296 (447)
T ss_pred EeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhh
Confidence 11 12479999999999998664443333222111000 0001111110000
Q ss_pred --------CCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC--CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCc
Q 048801 532 --------PPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD--CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPR 601 (1715)
Q Consensus 532 --------~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D--GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~ 601 (1715)
.....+........-++..++||+|..+++|-... +.+.+||+...++...+. ...+|....|+|..++
T Consensus 297 E~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~pr 375 (447)
T KOG4497|consen 297 EQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPR 375 (447)
T ss_pred hhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCce
Confidence 00011111222334568889999999999986543 579999998877655553 4567999999995556
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCe
Q 048801 602 IAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQ 653 (1715)
Q Consensus 602 lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~ 653 (1715)
+++. .....+++|...-..++..-. ....|..+.|..+|..|+..+.|..
T Consensus 376 L~vc-tg~srLY~W~psg~~~V~vP~-~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 376 LVVC-TGKSRLYFWAPSGPRVVGVPK-KGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EEEE-cCCceEEEEcCCCceEEecCC-CCceeeeEEecCCCcEEEEEcCCce
Confidence 5554 445579999986655555544 3468999999999999999988763
No 194
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=8.3e-14 Score=174.49 Aligned_cols=301 Identities=16% Similarity=0.170 Sum_probs=205.1
Q ss_pred CeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCC---CCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCC
Q 048801 287 DITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGH---TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQ 363 (1715)
Q Consensus 287 ~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH---~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~ 363 (1715)
+-..+.|+|-...++++...-.|+|||.+.++.+..+..+ ...|+.+.+-.+.... ++++|+.||.|+||+-....
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~a-LlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDA-LLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchh-heeeeccCceEEEecccccc
Confidence 4566788888888999887779999999999888777543 3578899887765433 89999999999999643221
Q ss_pred CcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeee
Q 048801 364 YSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV 443 (1715)
Q Consensus 364 ~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~ 443 (1715)
. +....+.+.... ........+.-.-+.|.....+|++++.-..|+|||+....+ ....
T Consensus 1145 ~-------~~~eLVTaw~~L------s~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~--------~~di 1203 (1387)
T KOG1517|consen 1145 W-------KKPELVTAWSSL------SDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV--------VADI 1203 (1387)
T ss_pred c-------CCceeEEeeccc------cccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccccee--------Eeec
Confidence 0 000111111000 000011111114567877666666666678999999976422 1222
Q ss_pred ecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccC
Q 048801 444 LSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKV 523 (1715)
Q Consensus 444 l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~ 523 (1715)
..+....|+++.-+-. .++.|+.|..||.|++||.+....
T Consensus 1204 P~~s~t~vTaLS~~~~-------------------------~gn~i~AGfaDGsvRvyD~R~a~~--------------- 1243 (1387)
T KOG1517|consen 1204 PYGSSTLVTALSADLV-------------------------HGNIIAAGFADGSVRVYDRRMAPP--------------- 1243 (1387)
T ss_pred ccCCCccceeeccccc-------------------------CCceEEEeecCCceEEeecccCCc---------------
Confidence 2333445555443321 247999999999999999985221
Q ss_pred CCCCCCCCCCCCCCcccccCCCCC--eeEEEeCCCCCE-EEEEecCCeEEEEECCCCceE--EEEecCC--C-CeEEEEE
Q 048801 524 PPPPLPPQPPRGGPRQRLLPTPRG--VNMIVWSLDNRF-VLAAIMDCRICVWNAVDGSLV--HSLTGHS--A-SSYVLDV 595 (1715)
Q Consensus 524 ~~~~~~~~~~~g~~~~~l~~h~~~--VtslafSPDG~~-LaTgs~DGtI~IWDl~sg~~l--~tL~gH~--~-~V~sLaf 595 (1715)
...+.....|... |..+.+.+.|-- |++|+.||.|++||++..... .++..|. + .++++..
T Consensus 1244 -----------ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~V 1312 (1387)
T KOG1517|consen 1244 -----------DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTV 1312 (1387)
T ss_pred -----------cccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeee
Confidence 1234445556555 888999887655 999999999999999874222 2333343 3 4899999
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCCCceEEEEEc-------ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 048801 596 HPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEI-------GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 596 SP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~-------h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe 663 (1715)
|+ ...++|+|+. +.|+||++ .|+.+..+.. ..+.+.+++|+|.--+||+|..|..|.||....++
T Consensus 1313 H~-hapiiAsGs~-q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1313 HE-HAPIIASGSA-QLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cc-CCCeeeecCc-ceEEEEec-ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 99 7789999988 99999998 5665555442 23467899999999999999999999999876543
No 195
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=4.5e-13 Score=145.80 Aligned_cols=287 Identities=14% Similarity=0.186 Sum_probs=198.7
Q ss_pred CeEEEEECCCCCEEEEEeCCCeeEEEECCC---------C-CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEE
Q 048801 287 DITDLAVSSNNTLVASASNDFVIRVWRLPD---------G-LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356 (1715)
Q Consensus 287 ~VtsLafSpDg~lLASGS~DGtIrVWDl~t---------g-~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrI 356 (1715)
.|.+-+++|.+++|++|..+|.|.+..+.. | ..+...++|.++|+.++|..+ +|++|+ ||.|+-
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~-----~Lls~g-dG~V~g 85 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD-----FLLSGG-DGLVYG 85 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh-----heeecc-CceEEE
Confidence 455668999999999999999999998853 2 344556899999999999943 566666 599999
Q ss_pred EecCCCCCc----ceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCcc
Q 048801 357 WDARYSQYS----PRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVE 432 (1715)
Q Consensus 357 WDl~tg~~l----~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~ 432 (1715)
|..+..... ..+.... +.......-..|.++.+.|..+-+++++.|+.++-||+.+++
T Consensus 86 w~W~E~~es~~~K~lwe~~~----------------P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~-- 147 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKI----------------PMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR-- 147 (325)
T ss_pred eeehhhhhhccchhhhhhcC----------------ccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE--
Confidence 987643321 0010000 000111223458899999877777777789999999999864
Q ss_pred CCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccc
Q 048801 433 DSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKV 512 (1715)
Q Consensus 433 ~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~ 512 (1715)
..+.+.+|++.|.+++--... ..+++|+.||++++||+++++....+
T Consensus 148 -------i~r~~rGHtDYvH~vv~R~~~--------------------------~qilsG~EDGtvRvWd~kt~k~v~~i 194 (325)
T KOG0649|consen 148 -------IQREYRGHTDYVHSVVGRNAN--------------------------GQILSGAEDGTVRVWDTKTQKHVSMI 194 (325)
T ss_pred -------EEEEEcCCcceeeeeeecccC--------------------------cceeecCCCccEEEEeccccceeEEe
Confidence 467899999999999873322 58999999999999999998765444
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcccccCC-CCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeE
Q 048801 513 GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPT-PRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSY 591 (1715)
Q Consensus 513 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h-~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~ 591 (1715)
...... ..+.+| ...|-+++. +..+|++|+ ...+.+|.+++.++..++. -.+.|.
T Consensus 195 e~yk~~--------------------~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfp-ipa~v~ 250 (325)
T KOG0649|consen 195 EPYKNP--------------------NLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFP-IPARVH 250 (325)
T ss_pred ccccCh--------------------hhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEe-ccccee
Confidence 222111 112222 234666665 556888765 5679999999988877765 344577
Q ss_pred EEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCC-CEEEEEeCCCeEEEEE
Q 048801 592 VLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDG-TSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 592 sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG-~~LAsgs~DG~I~IWd 658 (1715)
.+.| ....++++|..+.|.-|.+ .|..-..........+...|+..- ++|-+++....+.|+.
T Consensus 251 ~v~F---~~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 251 LVDF---VDDCVLIGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred Eeee---ecceEEEeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 7788 3467778888889999987 566666665555556666665443 3444567777777764
No 196
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.59 E-value=2e-13 Score=151.92 Aligned_cols=301 Identities=18% Similarity=0.218 Sum_probs=206.0
Q ss_pred EEEEecCCCCCeEEEEECC---CCCEEEEEeC----CCeeEEEECC--CCCceEEE-eCCCCCeEEEEecCCCCc--ceE
Q 048801 277 CLASCRGHEGDITDLAVSS---NNTLVASASN----DFVIRVWRLP--DGLPISVL-RGHTGAVTAIAFSPRPSA--IYQ 344 (1715)
Q Consensus 277 ~l~tL~gHs~~VtsLafSp---Dg~lLASGS~----DGtIrVWDl~--tg~~l~~L-~gH~~~VtsLafSPdg~~--~~~ 344 (1715)
.+..+.. .-.+.++.|+. .+.+||.|+. .+.|.|-.+. +++.+..- ..|..+++.+.|.|+... ..+
T Consensus 37 eiy~Y~a-p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdl 115 (364)
T KOG0290|consen 37 EIYTYNA-PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDL 115 (364)
T ss_pred eEEEecC-CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcch
Confidence 3444442 23577788873 2457787764 3556665543 34333221 358999999999998742 223
Q ss_pred EEEecCCCcEEEEecCCC--CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeE
Q 048801 345 LLSSSDDGTCRIWDARYS--QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFA 421 (1715)
Q Consensus 345 LaSgS~DGtVrIWDl~tg--~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~I 421 (1715)
|+++ +..+++|.+... .......+ .......+..+++++.|+. +-++|.+.+-|.++
T Consensus 116 LATs--~D~LRlWri~~ee~~~~~~~~L------------------~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTC 175 (364)
T KOG0290|consen 116 LATS--SDFLRLWRIGDEESRVELQSVL------------------NNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTC 175 (364)
T ss_pred hhcc--cCeEEEEeccCcCCceehhhhh------------------ccCcccccCCcccccccccCCcceeEeecccCeE
Confidence 4443 346999998742 21111111 0111233466799999987 66899999999999
Q ss_pred EEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEE
Q 048801 422 RVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIW 501 (1715)
Q Consensus 422 rVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIW 501 (1715)
.|||+.++. .......+-+|...|..|+|...+ .+.|++++.||++++|
T Consensus 176 TiWdie~~~------~~~vkTQLIAHDKEV~DIaf~~~s-------------------------~~~FASvgaDGSvRmF 224 (364)
T KOG0290|consen 176 TIWDIETGV------SGTVKTQLIAHDKEVYDIAFLKGS-------------------------RDVFASVGADGSVRMF 224 (364)
T ss_pred EEEEEeecc------ccceeeEEEecCcceeEEEeccCc-------------------------cceEEEecCCCcEEEE
Confidence 999998752 233456778999999999999865 3799999999999999
Q ss_pred ecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CCCEEEEEecC-CeEEEEECCC-Cc
Q 048801 502 IPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVLAAIMD-CRICVWNAVD-GS 578 (1715)
Q Consensus 502 Dl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~LaTgs~D-GtI~IWDl~s-g~ 578 (1715)
|++.... .+..|. -.....+...++|++ |-+++|+-..| ..|.|.|++. ..
T Consensus 225 DLR~leH------STIIYE--------------------~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t 278 (364)
T KOG0290|consen 225 DLRSLEH------STIIYE--------------------DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT 278 (364)
T ss_pred Eeccccc------ceEEec--------------------CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc
Confidence 9986331 111111 001133566678886 45677775555 4689999987 46
Q ss_pred eEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC------ceEEEEEcccceEEEEEEcC-CCCEEEEEeCC
Q 048801 579 LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG------TPIRIYEIGRFKLVDGKFSP-DGTSIVLSDDV 651 (1715)
Q Consensus 579 ~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg------k~l~tl~~h~~~V~svafSP-DG~~LAsgs~D 651 (1715)
++..|++|.+.|++++|.|.....++|||.|..+.|||+... .++..+. ..+.|..+.|++ .+.+|+++..
T Consensus 279 pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~- 356 (364)
T KOG0290|consen 279 PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG- 356 (364)
T ss_pred ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec-
Confidence 788999999999999999988899999999999999999752 2334444 456799999996 5677887765
Q ss_pred CeEEEE
Q 048801 652 GQIYLL 657 (1715)
Q Consensus 652 G~I~IW 657 (1715)
..+.|.
T Consensus 357 kkleiL 362 (364)
T KOG0290|consen 357 KKLEIL 362 (364)
T ss_pred CeeeEE
Confidence 344443
No 197
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=2e-14 Score=168.73 Aligned_cols=315 Identities=17% Similarity=0.218 Sum_probs=232.8
Q ss_pred cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE-eCCCCCeEEEEecCCCCcceEEEEecCCCcE
Q 048801 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL-RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L-~gH~~~VtsLafSPdg~~~~~LaSgS~DGtV 354 (1715)
.+...|.+|.+.|..|.|+..|..|++|+.|..|.+||+..+.+...+ .||...|....|.|..... .+++++.||.|
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~-ti~~~s~dgqv 211 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDR-TIVTSSRDGQV 211 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCc-CceeccccCce
Confidence 445678899999999999999999999999999999999998877666 4799999988999876543 79999999999
Q ss_pred EEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccC
Q 048801 355 RIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVED 433 (1715)
Q Consensus 355 rIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~ 433 (1715)
++=.+.....+ ........|.+.|.-++.-|+. ..|.+++.|+.+.-+|++....
T Consensus 212 r~s~i~~t~~~----------------------e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~p-- 267 (559)
T KOG1334|consen 212 RVSEILETGYV----------------------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVP-- 267 (559)
T ss_pred eeeeeccccce----------------------ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCc--
Confidence 98765422211 1122345567788889988865 5688899999999999986532
Q ss_pred CCCCceeeeeecCCCC---CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCc
Q 048801 434 SEQPIHELDVLSGHEN---DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHG 510 (1715)
Q Consensus 434 ~~~~~~~l~~l~gH~~---~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~ 510 (1715)
...+..-..+.. ....++..|.. ...+++++.|..+++||.+.-....
T Consensus 268 ----a~~~~cr~~~~~~~v~L~~Ia~~P~n-------------------------t~~faVgG~dqf~RvYD~R~~~~e~ 318 (559)
T KOG1334|consen 268 ----AEKFVCREADEKERVGLYTIAVDPRN-------------------------TNEFAVGGSDQFARVYDQRRIDKEE 318 (559)
T ss_pred ----cceeeeeccCCccceeeeeEecCCCC-------------------------ccccccCChhhhhhhhcccchhhcc
Confidence 222223333333 45667777654 3689999999999999987532111
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC--C----------c
Q 048801 511 KVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD--G----------S 578 (1715)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s--g----------~ 578 (1715)
..+ ... .-.+........-.|++++|+.++.-|++...|-.|+++.-.- | .
T Consensus 319 ~n~----~~~-------------~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~ 381 (559)
T KOG1334|consen 319 NNG----VLD-------------KFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQ 381 (559)
T ss_pred ccc----hhh-------------hcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhh
Confidence 111 000 0001111113345699999999888888888899999995432 2 2
Q ss_pred eEE-EEecCCC--CeEEEEEc-cCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeE
Q 048801 579 LVH-SLTGHSA--SSYVLDVH-PFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQI 654 (1715)
Q Consensus 579 ~l~-tL~gH~~--~V~sLafS-P~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I 654 (1715)
.+. .++||.. .|.++-|- | ...++++|+.-|.|+||+-.+++.++.+.+.+.-|.|+.=+|--..||+++-|--|
T Consensus 382 ~~k~vYKGHrN~~TVKgVNFfGP-rsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DV 460 (559)
T KOG1334|consen 382 YVKRVYKGHRNSRTVKGVNFFGP-RSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDV 460 (559)
T ss_pred ccchhhcccccccccceeeeccC-ccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccce
Confidence 233 3788865 46666663 3 46799999999999999999999999998877778899999999999999999999
Q ss_pred EEEECCCC
Q 048801 655 YLLNTGQG 662 (1715)
Q Consensus 655 ~IWdl~tG 662 (1715)
+||...+.
T Consensus 461 KIWTP~~~ 468 (559)
T KOG1334|consen 461 KIWTPLTA 468 (559)
T ss_pred eeecCCcc
Confidence 99987444
No 198
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.57 E-value=1.6e-13 Score=152.66 Aligned_cols=243 Identities=20% Similarity=0.296 Sum_probs=181.0
Q ss_pred CCCCCeEEEEEcCCC-----CEEEEEeCCCcEEEEeCCC--CcE--EEEe-----cCCCCCeEEEEECC-CCCEEEEEeC
Q 048801 241 GHRDAVYCAIFDRSG-----RFVITGSDDRLVKIWSMET--AFC--LASC-----RGHEGDITDLAVSS-NNTLVASASN 305 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG-----~~LaTGS~DGtIrIWDl~t--gk~--l~tL-----~gHs~~VtsLafSp-Dg~lLASGS~ 305 (1715)
.|.-+++.+.|.|+. .+|||.++ .++||.+.. .+. ...| ..+.+++++..|+. +-++|.+.|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 588899999999976 36777653 799999863 221 1112 24677999999987 6789999999
Q ss_pred CCeeEEEECCCCCc---eEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccC
Q 048801 306 DFVIRVWRLPDGLP---ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSN 382 (1715)
Q Consensus 306 DGtIrVWDl~tg~~---l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~ 382 (1715)
|-+..|||+++|.. ...|-.|...|..|+|...+.. .+++.|.||.|+++|++..+....++....
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~--~FASvgaDGSvRmFDLR~leHSTIIYE~p~--------- 240 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD--VFASVGADGSVRMFDLRSLEHSTIIYEDPS--------- 240 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc--eEEEecCCCcEEEEEecccccceEEecCCC---------
Confidence 99999999998743 5567789999999999996654 899999999999999997765444433211
Q ss_pred CCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCC-CeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCc
Q 048801 383 VPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSD-TFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 383 ~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~D-G~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg 460 (1715)
.......++|++.. +++|+-..| ..|.|.|++. |..++..+.+|.+.|+.|+|.|..
T Consensus 241 -------------~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~--------P~tpva~L~~H~a~VNgIaWaPhS 299 (364)
T KOG0290|consen 241 -------------PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV--------PCTPVARLRNHQASVNGIAWAPHS 299 (364)
T ss_pred -------------CCCcceeeccCcCCchHHhhhhcCCceEEEEEecC--------CCcceehhhcCcccccceEecCCC
Confidence 13457788898744 666665443 5688999975 355688899999999999999976
Q ss_pred ccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc
Q 048801 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR 540 (1715)
Q Consensus 461 ~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 540 (1715)
...|++++.|..+.|||+.+.-. .....++..
T Consensus 300 -------------------------~~hictaGDD~qaliWDl~q~~~-----------------------~~~~dPila 331 (364)
T KOG0290|consen 300 -------------------------SSHICTAGDDCQALIWDLQQMPR-----------------------ENGEDPILA 331 (364)
T ss_pred -------------------------CceeeecCCcceEEEEecccccc-----------------------cCCCCchhh
Confidence 47999999999999999975110 011122222
Q ss_pred ccCCCCCeeEEEeCC-CCCEEEEEecC
Q 048801 541 LLPTPRGVNMIVWSL-DNRFVLAAIMD 566 (1715)
Q Consensus 541 l~~h~~~VtslafSP-DG~~LaTgs~D 566 (1715)
.. ..+.|+.+.|++ .+.+|+++...
T Consensus 332 y~-a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 332 YT-AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred hh-ccceeeeeeecccCCCEEEEEecC
Confidence 22 466799999995 67788877643
No 199
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.56 E-value=2.9e-12 Score=155.07 Aligned_cols=276 Identities=12% Similarity=0.152 Sum_probs=173.3
Q ss_pred EEEeCCCeeEEEECCC-CC--ceEEEeCCCCCeEEEEecCCCCcceEEEE-ecCCCcEEEEecCC-CCCcceecCCCCCC
Q 048801 301 ASASNDFVIRVWRLPD-GL--PISVLRGHTGAVTAIAFSPRPSAIYQLLS-SSDDGTCRIWDARY-SQYSPRIYLPKPPD 375 (1715)
Q Consensus 301 ASGS~DGtIrVWDl~t-g~--~l~~L~gH~~~VtsLafSPdg~~~~~LaS-gS~DGtVrIWDl~t-g~~l~~i~~~~~~~ 375 (1715)
++...++.|.+|++.+ +. .+..+. +.+....++++|+++ +|++ +..++.|.+|++.. +.+. ....
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~---~lyv~~~~~~~i~~~~~~~~g~l~-~~~~----- 75 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKR---HLYVGVRPEFRVLSYRIADDGALT-FAAE----- 75 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCC---EEEEEECCCCcEEEEEECCCCceE-Eeee-----
Confidence 3446789999999964 33 344444 446678899999987 5544 45688999999862 2211 1100
Q ss_pred CccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec-CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEE
Q 048801 376 AITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS-SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYV 454 (1715)
Q Consensus 376 ~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs-~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sL 454 (1715)
.........++|+|+|++|++++ .++.|.+|++.+... ....+..+.+ .....++
T Consensus 76 ------------------~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~-----~~~~~~~~~~-~~~~~~~ 131 (330)
T PRK11028 76 ------------------SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI-----PVAPIQIIEG-LEGCHSA 131 (330)
T ss_pred ------------------ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC-----CCCceeeccC-CCcccEe
Confidence 00011246799999999888776 488999999963211 0111222222 2345677
Q ss_pred EEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCC
Q 048801 455 QFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534 (1715)
Q Consensus 455 afspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 534 (1715)
+++|++ ...+++...++.|.+||+.+........
T Consensus 132 ~~~p~g-------------------------~~l~v~~~~~~~v~v~d~~~~g~l~~~~--------------------- 165 (330)
T PRK11028 132 NIDPDN-------------------------RTLWVPCLKEDRIRLFTLSDDGHLVAQE--------------------- 165 (330)
T ss_pred EeCCCC-------------------------CEEEEeeCCCCEEEEEEECCCCcccccC---------------------
Confidence 888876 2344667778999999997522110000
Q ss_pred CCCcccccCCCCCeeEEEeCCCCCEEEEEec-CCeEEEEECCC--Cc--eEEEEecC------CCCeEEEEEccCCCcEE
Q 048801 535 GGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM-DCRICVWNAVD--GS--LVHSLTGH------SASSYVLDVHPFNPRIA 603 (1715)
Q Consensus 535 g~~~~~l~~h~~~VtslafSPDG~~LaTgs~-DGtI~IWDl~s--g~--~l~tL~gH------~~~V~sLafSP~dg~lL 603 (1715)
...... ........++|+|+|++|+++.. ++.|.+|++.. ++ .+..+..+ ......+.++| ++++|
T Consensus 166 -~~~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~l 242 (330)
T PRK11028 166 -PAEVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHL 242 (330)
T ss_pred -CCceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEE
Confidence 000000 11234567899999999988876 89999999973 33 34444322 11234688999 55655
Q ss_pred EEE-eCCCcEEEEECCCCc----eEEEEEcccceEEEEEEcCCCCEEEEEeC-CCeEEEEECC
Q 048801 604 MSA-GYDGRTIVWDIWEGT----PIRIYEIGRFKLVDGKFSPDGTSIVLSDD-VGQIYLLNTG 660 (1715)
Q Consensus 604 aSg-s~DGtI~VWDl~tgk----~l~tl~~h~~~V~svafSPDG~~LAsgs~-DG~I~IWdl~ 660 (1715)
+++ ..++.|.+|++.... .+..+..+ .....++|+|||++|+++.. ++.|.+|++.
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 555 457899999986533 22333222 23457899999999998765 8999999874
No 200
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=4.4e-14 Score=168.92 Aligned_cols=270 Identities=19% Similarity=0.267 Sum_probs=191.8
Q ss_pred EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcce
Q 048801 321 SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI 400 (1715)
Q Consensus 321 ~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~V 400 (1715)
.++..|...|..++|.|... .|++++.||+|.+|++..... .......+...+..|.++|
T Consensus 288 ~tl~s~~d~ir~l~~~~sep---~lit~sed~~lk~WnLqk~~~-----------------s~~~~~epi~tfraH~gPV 347 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEP---VLITASEDGTLKLWNLQKAKK-----------------SAEKDVEPILTFRAHEGPV 347 (577)
T ss_pred eeeecchhhhhhhhcCCCCC---eEEEeccccchhhhhhcccCC-----------------ccccceeeeEEEecccCce
Confidence 36677999999999999887 899999999999999833110 0011233456677899999
Q ss_pred eEEEEccCCCeEEEecCCCeEEEEeCCCCC-ccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccc
Q 048801 401 LCCAYNANGTVFVTGSSDTFARVWSACKSS-VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKF 479 (1715)
Q Consensus 401 tslafSpdG~~LatGs~DG~IrVWDl~t~~-~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~ 479 (1715)
.|+++.+++..+.+|+.||+|+.|++.... ......+......+.||++.|+.+++++..
T Consensus 348 l~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~------------------- 408 (577)
T KOG0642|consen 348 LCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK------------------- 408 (577)
T ss_pred EEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-------------------
Confidence 999999999999999999999999886221 112233445567889999999999999864
Q ss_pred cCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC-C
Q 048801 480 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN-R 558 (1715)
Q Consensus 480 ~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG-~ 558 (1715)
+.|++|+.||++++|+....... .+ ......+.-..+.+-... .
T Consensus 409 -------~~Llscs~DgTvr~w~~~~~~~~-~f---------------------------~~~~e~g~Plsvd~~ss~~a 453 (577)
T KOG0642|consen 409 -------DRLLSCSSDGTVRLWEPTEESPC-TF---------------------------GEPKEHGYPLSVDRTSSRPA 453 (577)
T ss_pred -------cceeeecCCceEEeeccCCcCcc-cc---------------------------CCccccCCcceEeeccchhH
Confidence 78999999999999988653320 00 000001112223332211 1
Q ss_pred EEEEEecCCeEEEEECCCCceEEEEec-------CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccc
Q 048801 559 FVLAAIMDCRICVWNAVDGSLVHSLTG-------HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRF 631 (1715)
Q Consensus 559 ~LaTgs~DGtI~IWDl~sg~~l~tL~g-------H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~ 631 (1715)
..++...-+.--++++..+..+..+.. ....+.-+.++| ...+.+++..|+.|+++|..+|.++.....|..
T Consensus 454 ~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~ 532 (577)
T KOG0642|consen 454 HSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKILHSMVAHKD 532 (577)
T ss_pred hhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccccccchheeeccc
Confidence 111111122222333333433333321 123467788888 667888999999999999999999999999999
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 632 KLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 632 ~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
.++++++.|+|-+|++++.||.+.+|.+....+.
T Consensus 533 svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 533 SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred eecceeecCCCceEEeecCCceeehhhccchhee
Confidence 9999999999999999999999999998665443
No 201
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.55 E-value=4.1e-12 Score=153.73 Aligned_cols=283 Identities=12% Similarity=0.156 Sum_probs=171.7
Q ss_pred EEeCCCcEEEEeCCC-Cc--EEEEecCCCCCeEEEEECCCCCEEEEEe-CCCeeEEEECC-CCCc--eEEEeCCCCCeEE
Q 048801 260 TGSDDRLVKIWSMET-AF--CLASCRGHEGDITDLAVSSNNTLVASAS-NDFVIRVWRLP-DGLP--ISVLRGHTGAVTA 332 (1715)
Q Consensus 260 TGS~DGtIrIWDl~t-gk--~l~tL~gHs~~VtsLafSpDg~lLASGS-~DGtIrVWDl~-tg~~--l~~L~gH~~~Vts 332 (1715)
+...++.|.+|++.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|++. ++.. +.... ..+....
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~ 84 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTH 84 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceE
Confidence 346789999999964 43 455554 346678899999999987765 47889999997 3432 22222 3345678
Q ss_pred EEecCCCCcceEEEEe-cCCCcEEEEecCCCCCc-ceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCC
Q 048801 333 IAFSPRPSAIYQLLSS-SDDGTCRIWDARYSQYS-PRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT 410 (1715)
Q Consensus 333 LafSPdg~~~~~LaSg-S~DGtVrIWDl~tg~~l-~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~ 410 (1715)
++|+|+++ +|+++ ..++.|.+|++.....+ ..+.. ..+.....+++++|+|+
T Consensus 85 i~~~~~g~---~l~v~~~~~~~v~v~~~~~~g~~~~~~~~-----------------------~~~~~~~~~~~~~p~g~ 138 (330)
T PRK11028 85 ISTDHQGR---FLFSASYNANCVSVSPLDKDGIPVAPIQI-----------------------IEGLEGCHSANIDPDNR 138 (330)
T ss_pred EEECCCCC---EEEEEEcCCCeEEEEEECCCCCCCCceee-----------------------ccCCCcccEeEeCCCCC
Confidence 99999998 45544 45899999998643211 11100 00112356788999998
Q ss_pred eEEEe-cCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceE
Q 048801 411 VFVTG-SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNI 489 (1715)
Q Consensus 411 ~LatG-s~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~L 489 (1715)
+++++ ..++.|.+||+.+...... ....... ... ......++|+|++ +++
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~-~~~~~~~-~~~-g~~p~~~~~~pdg--------------------------~~l 189 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVA-QEPAEVT-TVE-GAGPRHMVFHPNQ--------------------------QYA 189 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccc-cCCCcee-cCC-CCCCceEEECCCC--------------------------CEE
Confidence 88554 4569999999975221000 0000011 111 2345678999986 566
Q ss_pred EEEc-CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEec-CC
Q 048801 490 VTCS-RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM-DC 567 (1715)
Q Consensus 490 aSgS-~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~-DG 567 (1715)
+++. .+++|.+|++..... .+ .....+...+. -..+......+.++|+|++|+++.. ++
T Consensus 190 yv~~~~~~~v~v~~~~~~~~--~~---~~~~~~~~~p~--------------~~~~~~~~~~i~~~pdg~~lyv~~~~~~ 250 (330)
T PRK11028 190 YCVNELNSSVDVWQLKDPHG--EI---ECVQTLDMMPA--------------DFSDTRWAADIHITPDGRHLYACDRTAS 250 (330)
T ss_pred EEEecCCCEEEEEEEeCCCC--CE---EEEEEEecCCC--------------cCCCCccceeEEECCCCCEEEEecCCCC
Confidence 5554 499999999973210 00 00000000000 0001122346899999999998854 68
Q ss_pred eEEEEECCCCceEEEEecC---CCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 568 RICVWNAVDGSLVHSLTGH---SASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 568 tI~IWDl~sg~~l~tL~gH---~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
.|.+|++........+.++ ......+.|+|++..++++...+++|.||++.
T Consensus 251 ~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 251 LISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 9999998654322222222 12345789999555555555569999999874
No 202
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.54 E-value=1.3e-14 Score=150.40 Aligned_cols=126 Identities=41% Similarity=0.659 Sum_probs=113.2
Q ss_pred CCCCCCCCccCCCCCCCCCCCCChHHHHHHhhhHHHhhhhccccchhhhhHHHHHHh-hhccccccCCCCCCHHHHHHHh
Q 048801 1587 DSHLHSPWEMHDPNVMWEHPEIDSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAA-QKLDYLNRFPVPLYPEVIRLRL 1665 (1715)
Q Consensus 1587 ~~~~~SpWeie~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~i~~Rl 1665 (1715)
.+...|+|++.++. |.+|++.++.|++++..+.++... ...+.+..|..+++.. +.++|...++.|||++||++||
T Consensus 2 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~l~~~-~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl 78 (128)
T cd05529 2 YNPLSSEWELFDPG--WEQPHIRDEERERLISGLDKLLLS-LQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRL 78 (128)
T ss_pred CCCCCCchhccccc--CcCCCCCHHHHHHHHHHHHHHHhc-ccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHH
Confidence 35678999997766 888999999999999999999854 2445566677777777 8999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1666 VNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1666 ~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
++++|+++++++.||++|++||++||++++.|..+|+.|.++|.+.|+.+
T Consensus 79 ~~~~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~i~~~A~~l~~~~~~~l~~~ 128 (128)
T cd05529 79 ENRYYRSLEALRHDVRLILSNAETFNEPNSEIAKKAKRLSDWLLRILSSL 128 (128)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999764
No 203
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.54 E-value=3.7e-13 Score=154.80 Aligned_cols=227 Identities=22% Similarity=0.356 Sum_probs=167.3
Q ss_pred EecCCCCCeEEEEECC-CCCEEEEEeCCCeeEEEECCCC-------CceEEEeCCCCCeEEEEecCCCCcceEEEEecCC
Q 048801 280 SCRGHEGDITDLAVSS-NNTLVASASNDFVIRVWRLPDG-------LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD 351 (1715)
Q Consensus 280 tL~gHs~~VtsLafSp-Dg~lLASGS~DGtIrVWDl~tg-------~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D 351 (1715)
.+.||+++|.+++|+| +...|||||.|.+|.||.+..+ +++..|.||...|--++|+|.-.+ .|++++.|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N--VLlsag~D 153 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN--VLLSAGSD 153 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh--hHhhccCC
Confidence 4679999999999999 6678999999999999998754 567889999999999999998764 79999999
Q ss_pred CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCc
Q 048801 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSV 431 (1715)
Q Consensus 352 GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~ 431 (1715)
.+|.+|++.+|+.+.++ .|...|++++|+.||.+|++++.|..|+|||.+++++
T Consensus 154 n~v~iWnv~tgeali~l--------------------------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~ 207 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITL--------------------------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV 207 (472)
T ss_pred ceEEEEeccCCceeeec--------------------------CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE
Confidence 99999999998754332 2677799999999999999999999999999998754
Q ss_pred cCCCCCceeeeeecCCCC-CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEc----CCCeEEEEecCCC
Q 048801 432 EDSEQPIHELDVLSGHEN-DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS----RDGSAIIWIPRSR 506 (1715)
Q Consensus 432 ~~~~~~~~~l~~l~gH~~-~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS----~DGsIrIWDl~t~ 506 (1715)
+..-.+|.+ .-..+.|..++ . |+|.+ .+..+-+||...-
T Consensus 208 ---------v~e~~~heG~k~~Raifl~~g--------------------------~-i~tTGfsr~seRq~aLwdp~nl 251 (472)
T KOG0303|consen 208 ---------VSEGVAHEGAKPARAIFLASG--------------------------K-IFTTGFSRMSERQIALWDPNNL 251 (472)
T ss_pred ---------eeecccccCCCcceeEEeccC--------------------------c-eeeeccccccccceeccCcccc
Confidence 333345554 22334455554 3 44433 4678889987642
Q ss_pred ccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEE-EecCCeEEEEECCCCceE-EEEe
Q 048801 507 RSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLA-AIMDCRICVWNAVDGSLV-HSLT 584 (1715)
Q Consensus 507 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaT-gs~DGtI~IWDl~sg~~l-~tL~ 584 (1715)
.. ...........+|..--|.+|...|.. |-.|+.|+-|.+.+-.+. +-|.
T Consensus 252 ~e---------------------------P~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln 304 (472)
T KOG0303|consen 252 EE---------------------------PIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLN 304 (472)
T ss_pred cC---------------------------cceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEec
Confidence 20 011122334566777788898887765 557999999998765532 2222
Q ss_pred --cCCCCeEEEEEcc
Q 048801 585 --GHSASSYVLDVHP 597 (1715)
Q Consensus 585 --gH~~~V~sLafSP 597 (1715)
....+-..+.|-|
T Consensus 305 ~f~S~epQRG~g~mP 319 (472)
T KOG0303|consen 305 TFSSKEPQRGMGFMP 319 (472)
T ss_pred ccccCCccccccccc
Confidence 1234445666666
No 204
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.52 E-value=1.5e-12 Score=147.06 Aligned_cols=259 Identities=16% Similarity=0.206 Sum_probs=186.8
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC---CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEE
Q 048801 281 CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG---LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW 357 (1715)
Q Consensus 281 L~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg---~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIW 357 (1715)
+..-..+|+|.+|++|+..+|.+.....|.||..... +...++..|...|++|.|.|..+ .|++++.|..-++|
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn---rIvtcs~drnayVw 82 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN---RIVTCSHDRNAYVW 82 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC---ceeEccCCCCcccc
Confidence 3334679999999999999999999999999987654 46788899999999999999987 79999999999999
Q ss_pred ec-CCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCC
Q 048801 358 DA-RYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQ 436 (1715)
Q Consensus 358 Dl-~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~ 436 (1715)
.. ..+...+++. ...++..++|+.|+|.++.||+|+....|.||-+....--
T Consensus 83 ~~~~~~~Wkptlv-----------------------LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW---- 135 (361)
T KOG1523|consen 83 TQPSGGTWKPTLV-----------------------LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW---- 135 (361)
T ss_pred ccCCCCeecccee-----------------------EEEeccceeeEeecCcCceEEeccCccEEEEEEEecccce----
Confidence 88 4444433332 2234667899999999999999999999999988643210
Q ss_pred CceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccc
Q 048801 437 PIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWT 516 (1715)
Q Consensus 437 ~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~ 516 (1715)
......-..+...|+++.|+|+. -+|++|+.|+..+|+..--
T Consensus 136 -WVsKhikkPirStv~sldWhpnn--------------------------VLlaaGs~D~k~rVfSayI----------- 177 (361)
T KOG1523|consen 136 -WVSKHIKKPIRSTVTSLDWHPNN--------------------------VLLAAGSTDGKCRVFSAYI----------- 177 (361)
T ss_pred -ehhhhhCCccccceeeeeccCCc--------------------------ceecccccCcceeEEEEee-----------
Confidence 01112334567789999999986 4889999999999986431
Q ss_pred ccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCc-eEEEEecCCCCeEEEEE
Q 048801 517 RAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS-LVHSLTGHSASSYVLDV 595 (1715)
Q Consensus 517 ~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~-~l~tL~gH~~~V~sLaf 595 (1715)
+...-+-.+.+-....+.+..+.......+.|..+.|+|+|..|+-.+.|+.|.+-|..... .+..+....-+..++.|
T Consensus 178 K~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ 257 (361)
T KOG1523|consen 178 KGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSW 257 (361)
T ss_pred eccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEe
Confidence 11111111222222233344555555667889999999999999999999999999987664 33333333356666666
Q ss_pred ccCCCcEEEEEeCC
Q 048801 596 HPFNPRIAMSAGYD 609 (1715)
Q Consensus 596 SP~dg~lLaSgs~D 609 (1715)
-. ...++.+++|
T Consensus 258 is--e~~vv~ag~~ 269 (361)
T KOG1523|consen 258 IS--ENSVVAAGYD 269 (361)
T ss_pred ec--CCceeecCCC
Confidence 43 2334445555
No 205
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.52 E-value=2.5e-12 Score=145.25 Aligned_cols=218 Identities=17% Similarity=0.228 Sum_probs=170.4
Q ss_pred EEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEEC
Q 048801 238 KLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA---FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRL 314 (1715)
Q Consensus 238 ~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg---k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl 314 (1715)
.+.--..+|+|.||++|+..+|++-....|.||..... +..+++..|...|++|+|+|..+.|++|+.|..-+||..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 34444678999999999999999999999999998655 467899999999999999999999999999999999998
Q ss_pred CCC---CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 315 PDG---LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 315 ~tg---~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
..+ ++..+|..+...++++.|+|..+ .|++|+.-..|.||-+.....= .+ ...
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~en---kFAVgSgar~isVcy~E~ENdW---WV------------------sKh 140 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKEN---KFAVGSGARLISVCYYEQENDW---WV------------------SKH 140 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCc---eEEeccCccEEEEEEEecccce---eh------------------hhh
Confidence 433 55666677999999999999987 8999999999999977543210 00 001
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCC--------CC-ceeeeeecCCCCCeeEEEEccCccc
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSE--------QP-IHELDVLSGHENDVNYVQFSGCAVA 462 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~--------~~-~~~l~~l~gH~~~V~sLafspdg~a 462 (1715)
........|++++|+|++-+|++|+.|+.++||..--..++... .| ...+..+....+.|..+.|+|.|
T Consensus 141 ikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG-- 218 (361)
T KOG1523|consen 141 IKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG-- 218 (361)
T ss_pred hCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC--
Confidence 11233566999999999999999999999999986433221111 11 12233344566789999999987
Q ss_pred ccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCC
Q 048801 463 SRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 505 (1715)
Q Consensus 463 s~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t 505 (1715)
..|+-.+.|.++.+-|...
T Consensus 219 ------------------------~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 219 ------------------------NRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred ------------------------CEeeEecCCCceEEeecCC
Confidence 7999999999999988764
No 206
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.49 E-value=8.6e-12 Score=152.63 Aligned_cols=341 Identities=15% Similarity=0.142 Sum_probs=206.9
Q ss_pred CEE-EEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEE
Q 048801 256 RFV-ITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIA 334 (1715)
Q Consensus 256 ~~L-aTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLa 334 (1715)
+++ ++-..+|.|.|.|..+.+.+..+......-..++|+|||+++++++.||.|.++|+.+++.+.++... ....+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEE
Confidence 344 45567899999999999999999865544455789999999999999999999999999999998743 4568899
Q ss_pred ecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEE
Q 048801 335 FSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVT 414 (1715)
Q Consensus 335 fSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~Lat 414 (1715)
++++++. .+++....+.+.++|..+.+.+..+....... ......+..+..++....+++
T Consensus 85 ~s~DG~~--~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~------------------~~~~~Rv~aIv~s~~~~~fVv 144 (369)
T PF02239_consen 85 VSPDGKY--VYVANYEPGTVSVIDAETLEPVKTIPTGGMPV------------------DGPESRVAAIVASPGRPEFVV 144 (369)
T ss_dssp E--TTTE--EEEEEEETTEEEEEETTT--EEEEEE--EE-T------------------TTS---EEEEEE-SSSSEEEE
T ss_pred EcCCCCE--EEEEecCCCceeEeccccccceeecccccccc------------------cccCCCceeEEecCCCCEEEE
Confidence 9999982 34455678999999999988777664322110 002445778888888875555
Q ss_pred e-cCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCce-EEEE
Q 048801 415 G-SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN-IVTC 492 (1715)
Q Consensus 415 G-s~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~-LaSg 492 (1715)
. -..+.|.+.|....+ +. .... ...........|+|++ .+ +++.
T Consensus 145 ~lkd~~~I~vVdy~d~~------~~-~~~~-i~~g~~~~D~~~dpdg--------------------------ry~~va~ 190 (369)
T PF02239_consen 145 NLKDTGEIWVVDYSDPK------NL-KVTT-IKVGRFPHDGGFDPDG--------------------------RYFLVAA 190 (369)
T ss_dssp EETTTTEEEEEETTTSS------CE-EEEE-EE--TTEEEEEE-TTS--------------------------SEEEEEE
T ss_pred EEccCCeEEEEEecccc------cc-ceee-ecccccccccccCccc--------------------------ceeeecc
Confidence 4 445888888876431 11 1112 2223456677888876 44 4555
Q ss_pred cCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEE
Q 048801 493 SRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVW 572 (1715)
Q Consensus 493 S~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IW 572 (1715)
..+..|.++|..+++....+..-... ...+...+ .|...=..-+.+..+...++.-....+.+|
T Consensus 191 ~~sn~i~viD~~~~k~v~~i~~g~~p---------------~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~ 254 (369)
T PF02239_consen 191 NGSNKIAVIDTKTGKLVALIDTGKKP---------------HPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVH 254 (369)
T ss_dssp GGGTEEEEEETTTTEEEEEEE-SSSB---------------EETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-S
T ss_pred cccceeEEEeeccceEEEEeeccccc---------------cccccccc-cCCCcceEEeeccccceecccccCCccccc
Confidence 67778999998875533221100000 00011111 122110011222344444444444567789
Q ss_pred ECCCCceEEEEecCCCCeEEEEEccCCCcEEEEE----eCCCcEEEEECCCCceEEEEEccc-ceEEEEEEcCCCCEEEE
Q 048801 573 NAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSA----GYDGRTIVWDIWEGTPIRIYEIGR-FKLVDGKFSPDGTSIVL 647 (1715)
Q Consensus 573 Dl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSg----s~DGtI~VWDl~tgk~l~tl~~h~-~~V~svafSPDG~~LAs 647 (1715)
+..+.+.++.+....++ ..+..|| +++++... ...++|.|+|..+.+.+.++.... ..+..+.|++||+.+.+
T Consensus 255 d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~v 332 (369)
T PF02239_consen 255 DDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWV 332 (369)
T ss_dssp TTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEE
T ss_pred hhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEE
Confidence 99999999999987777 7788899 55555554 556899999999998887775333 25889999999998775
Q ss_pred E--eCCCeEEEEECCCCccccccc
Q 048801 648 S--DDVGQIYLLNTGQGESQKDAK 669 (1715)
Q Consensus 648 g--s~DG~I~IWdl~tGe~~k~~~ 669 (1715)
+ +.+|.|.|||..+.+..+..+
T Consensus 333 S~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 333 SVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEecCCCEEEEEECCCcEEEEEEE
Confidence 5 444579999999998776554
No 207
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.49 E-value=2.5e-12 Score=148.13 Aligned_cols=212 Identities=16% Similarity=0.215 Sum_probs=165.3
Q ss_pred CCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccc
Q 048801 392 SNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDA 470 (1715)
Q Consensus 392 ~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~ 470 (1715)
...+|...|..++|+| +...||+|+.|.+|.||.+..+-+. .....++..|.+|...|.-++|+|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~--~~ltepvv~L~gH~rrVg~V~wHPtA---------- 143 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT--RDLTEPVVELYGHQRRVGLVQWHPTA---------- 143 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccc--cCcccceEEEeecceeEEEEeecccc----------
Confidence 3467899999999999 5678999999999999999765432 22335678899999999999999976
Q ss_pred ccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeE
Q 048801 471 FKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNM 550 (1715)
Q Consensus 471 ~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vts 550 (1715)
.+.|++++.|.+|.+|++.++.. +.. ..|+.-|.+
T Consensus 144 ---------------~NVLlsag~Dn~v~iWnv~tgea-----------------------------li~-l~hpd~i~S 178 (472)
T KOG0303|consen 144 ---------------PNVLLSAGSDNTVSIWNVGTGEA-----------------------------LIT-LDHPDMVYS 178 (472)
T ss_pred ---------------hhhHhhccCCceEEEEeccCCce-----------------------------eee-cCCCCeEEE
Confidence 48999999999999999998552 122 238889999
Q ss_pred EEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCC-eEEEEEccCCCcEEEEEe---CCCcEEEEECCCC---ceE
Q 048801 551 IVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSAS-SYVLDVHPFNPRIAMSAG---YDGRTIVWDIWEG---TPI 623 (1715)
Q Consensus 551 lafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~-V~sLafSP~dg~lLaSgs---~DGtI~VWDl~tg---k~l 623 (1715)
+.|+.||.+|++++.|..|+|||.++++.+..-.+|.+. -..+.|-. ++.++.||- .+..+-|||...- -.+
T Consensus 179 ~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~ 257 (472)
T KOG0303|consen 179 MSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPNNLEEPIAL 257 (472)
T ss_pred EEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec-cCceeeeccccccccceeccCcccccCccee
Confidence 999999999999999999999999999999988888663 23344555 455555543 4678999987543 334
Q ss_pred EEEEcccceEEEEEEcCCCCEEE-EEeCCCeEEEEECCCC
Q 048801 624 RIYEIGRFKLVDGKFSPDGTSIV-LSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 624 ~tl~~h~~~V~svafSPDG~~LA-sgs~DG~I~IWdl~tG 662 (1715)
..+. ...+|.---|.+|...|. +|-.||.|+.|.+...
T Consensus 258 ~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 258 QELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred EEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 4454 344566667888888877 5567999999998654
No 208
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.49 E-value=7.9e-13 Score=156.15 Aligned_cols=267 Identities=14% Similarity=0.194 Sum_probs=180.7
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeE-EEEecC----CCCcceEEEEecCCCcEEEE
Q 048801 283 GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVT-AIAFSP----RPSAIYQLLSSSDDGTCRIW 357 (1715)
Q Consensus 283 gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~Vt-sLafSP----dg~~~~~LaSgS~DGtVrIW 357 (1715)
.|...|.|+.|+.+...+.+++.+..+.-|++.+. .+..+.-....|. .+..-+ .+.....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccch-hhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 46777889999987777766655544444455332 2222211111111 111111 11112378888999998887
Q ss_pred ecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCC
Q 048801 358 DARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQP 437 (1715)
Q Consensus 358 Dl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~ 437 (1715)
+-. ++. ......|.+.|.|-.|+|+|.-|++++.||.|++|.-..
T Consensus 91 ~k~-~rV-------------------------E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG--------- 135 (737)
T KOG1524|consen 91 NKS-ARV-------------------------ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG--------- 135 (737)
T ss_pred ccc-chh-------------------------hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc---------
Confidence 532 221 122345778899999999999999999999999998753
Q ss_pred ceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccc
Q 048801 438 IHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTR 517 (1715)
Q Consensus 438 ~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~ 517 (1715)
....++.....+|.|++|.|+. ...+.+. .+.+.|=-+..
T Consensus 136 -MLRStl~Q~~~~v~c~~W~p~S-------------------------~~vl~c~--g~h~~IKpL~~------------ 175 (737)
T KOG1524|consen 136 -MLRSTVVQNEESIRCARWAPNS-------------------------NSIVFCQ--GGHISIKPLAA------------ 175 (737)
T ss_pred -hHHHHHhhcCceeEEEEECCCC-------------------------CceEEec--CCeEEEeeccc------------
Confidence 2234555667799999999986 2333333 23444432221
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEcc
Q 048801 518 AYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHP 597 (1715)
Q Consensus 518 ~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP 597 (1715)
.....+...|.+-|.++.|++...+|++|+.|...+|||. -|..+..-..|..+|++++|.|
T Consensus 176 -----------------n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~np 237 (737)
T KOG1524|consen 176 -----------------NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNP 237 (737)
T ss_pred -----------------ccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeecc
Confidence 1234456789999999999999999999999999999995 6788888889999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEE
Q 048801 598 FNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLL 657 (1715)
Q Consensus 598 ~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IW 657 (1715)
+ ..++.++.. ++++= ....+.|..++||+||..+++|+..|.+.+-
T Consensus 238 -d-~~~~v~S~n-t~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 238 -E-KDYLLWSYN-TARFS-----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred -c-cceeeeeee-eeeec-----------CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 4 455444432 33311 1134679999999999999999999987653
No 209
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.47 E-value=1.7e-12 Score=153.48 Aligned_cols=264 Identities=14% Similarity=0.186 Sum_probs=184.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeE-EEEECC-------CCCEEEEEeCCCeeEEE
Q 048801 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDIT-DLAVSS-------NNTLVASASNDFVIRVW 312 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~Vt-sLafSp-------Dg~lLASGS~DGtIrVW 312 (1715)
-|...|.||.|+.....+.+++++..++-|++.+ .....+.-...-|. .+..-+ ....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~-~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSR-DSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccc-hhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 4667778999998877777665554444445433 22222211111111 111111 23478888999999998
Q ss_pred ECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCC
Q 048801 313 RLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSS 392 (1715)
Q Consensus 313 Dl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~ 392 (1715)
+ ..++....+..|.+.|.+-.|+|+|. -|++++.||.|++|.- +|.+..++
T Consensus 91 ~-k~~rVE~sv~AH~~A~~~gRW~~dGt---gLlt~GEDG~iKiWSr-sGMLRStl------------------------ 141 (737)
T KOG1524|consen 91 N-KSARVERSISAHAAAISSGRWSPDGA---GLLTAGEDGVIKIWSR-SGMLRSTV------------------------ 141 (737)
T ss_pred c-ccchhhhhhhhhhhhhhhcccCCCCc---eeeeecCCceEEEEec-cchHHHHH------------------------
Confidence 7 56777888899999999999999998 7999999999999974 33322221
Q ss_pred CCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccc
Q 048801 393 NGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFK 472 (1715)
Q Consensus 393 ~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~ 472 (1715)
......|.|++|.|+..-++.+- .+.+.|=.+.. ...+-...+|.+-|.++.|++..
T Consensus 142 -~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~---------n~k~i~WkAHDGiiL~~~W~~~s------------ 198 (737)
T KOG1524|consen 142 -VQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAA---------NSKIIRWRAHDGLVLSLSWSTQS------------ 198 (737)
T ss_pred -hhcCceeEEEEECCCCCceEEec-CCeEEEeeccc---------ccceeEEeccCcEEEEeecCccc------------
Confidence 12245699999999887665543 35565554432 22345678999999999999875
Q ss_pred ccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEE
Q 048801 473 EENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIV 552 (1715)
Q Consensus 473 ~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsla 552 (1715)
+.+++|+.|-..+|||.. |..+.....|..+|++++
T Consensus 199 --------------~lI~sgGED~kfKvWD~~------------------------------G~~Lf~S~~~ey~ITSva 234 (737)
T KOG1524|consen 199 --------------NIIASGGEDFRFKIWDAQ------------------------------GANLFTSAAEEYAITSVA 234 (737)
T ss_pred --------------cceeecCCceeEEeeccc------------------------------CcccccCChhccceeeee
Confidence 899999999999999875 334455667889999999
Q ss_pred eCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEE
Q 048801 553 WSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVW 615 (1715)
Q Consensus 553 fSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VW 615 (1715)
|.|+ ..++.++.+ ++++ -....+.|..++||+ ||..++.|...|.|.+=
T Consensus 235 ~npd-~~~~v~S~n-t~R~-----------~~p~~GSifnlsWS~-DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 235 FNPE-KDYLLWSYN-TARF-----------SSPRVGSIFNLSWSA-DGTQATCGTSTGQLIVA 283 (737)
T ss_pred eccc-cceeeeeee-eeee-----------cCCCccceEEEEEcC-CCceeeccccCceEEEe
Confidence 9999 666666543 3331 123567899999999 77888888888877664
No 210
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=6.8e-12 Score=136.77 Aligned_cols=279 Identities=15% Similarity=0.231 Sum_probs=187.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC---------C-cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMET---------A-FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~t---------g-k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
..|.+-+++|.+++|+.|+.+|.|-+..+.+ | ..+...++|.++|+.++|. ..+|++|+. |.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEee
Confidence 3466778999999999999999999998753 1 3455668999999999998 446777654 9999998
Q ss_pred CCCCCc------eEEE--eCCC-----CCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCc
Q 048801 314 LPDGLP------ISVL--RGHT-----GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGK 380 (1715)
Q Consensus 314 l~tg~~------l~~L--~gH~-----~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~ 380 (1715)
+..... +..+ .-|. -.|+++...|..+ -++.++.|+.++.||+.+|+....+
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en---Si~~AgGD~~~y~~dlE~G~i~r~~------------ 152 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN---SILFAGGDGVIYQVDLEDGRIQREY------------ 152 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC---cEEEecCCeEEEEEEecCCEEEEEE------------
Confidence 754221 1111 1122 3689999998877 4677779999999999999865554
Q ss_pred cCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC-CeeEEEEccC
Q 048801 381 SNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN-DVNYVQFSGC 459 (1715)
Q Consensus 381 ~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~-~V~sLafspd 459 (1715)
.+|...|.|++--.....+++|+.||+++|||..+++......+.+.-..+..|.+ .|-+++.+.
T Consensus 153 -------------rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e- 218 (325)
T KOG0649|consen 153 -------------RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE- 218 (325)
T ss_pred -------------cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC-
Confidence 45688899998844445688999999999999998765443333333333344433 456665543
Q ss_pred cccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcc
Q 048801 460 AVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQ 539 (1715)
Q Consensus 460 g~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~ 539 (1715)
+.+++| ..-.+.+|.+++..+.
T Consensus 219 ---------------------------dWlvCG-gGp~lslwhLrsse~t------------------------------ 240 (325)
T KOG0649|consen 219 ---------------------------DWLVCG-GGPKLSLWHLRSSEST------------------------------ 240 (325)
T ss_pred ---------------------------ceEEec-CCCceeEEeccCCCce------------------------------
Confidence 455555 4567899999864321
Q ss_pred cccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEE
Q 048801 540 RLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVW 615 (1715)
Q Consensus 540 ~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VW 615 (1715)
.+...+..+..+.| +...+++++....|.-|.+ +|.+-..........++..|+-.--.++..+|..+.+.|+
T Consensus 241 ~vfpipa~v~~v~F--~~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 241 CVFPIPARVHLVDF--VDDCVLIGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred EEEecccceeEeee--ecceEEEeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 12223445666777 4457778888888888886 4544444444444455555544112455556666666665
No 211
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=5.8e-12 Score=147.36 Aligned_cols=197 Identities=16% Similarity=0.157 Sum_probs=146.3
Q ss_pred eEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccccccc
Q 048801 401 LCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFK 480 (1715)
Q Consensus 401 tslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~ 480 (1715)
.+++|+++|..|++|+.||++|||+.... ..+.....|...|.++.|+|++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~---------~t~l~e~~~~~eV~DL~FS~dg-------------------- 198 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM---------LTILEEIAHHAEVKDLDFSPDG-------------------- 198 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc---------hhhhhhHhhcCccccceeCCCC--------------------
Confidence 78999999999999999999999997543 2345567788999999999997
Q ss_pred CCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC---
Q 048801 481 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN--- 557 (1715)
Q Consensus 481 ~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG--- 557 (1715)
..|++.+.| ..+||++.++........ ......+..+.|+.|+
T Consensus 199 ------k~lasig~d-~~~VW~~~~g~~~a~~t~---------------------------~~k~~~~~~cRF~~d~~~~ 244 (398)
T KOG0771|consen 199 ------KFLASIGAD-SARVWSVNTGAALARKTP---------------------------FSKDEMFSSCRFSVDNAQE 244 (398)
T ss_pred ------cEEEEecCC-ceEEEEeccCchhhhcCC---------------------------cccchhhhhceecccCCCc
Confidence 799999999 999999998642222110 1112234556676666
Q ss_pred CEE--EEEecCCeEEEEECCCCc-----eEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE-cc
Q 048801 558 RFV--LAAIMDCRICVWNAVDGS-----LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE-IG 629 (1715)
Q Consensus 558 ~~L--aTgs~DGtI~IWDl~sg~-----~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~-~h 629 (1715)
.++ +.....+.|+.|++.... ...+.......|++++.++ ++++++.|+.||.|-|++..+-++++..+ .|
T Consensus 245 ~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH 323 (398)
T KOG0771|consen 245 TLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMDGSVAIYDAKSLQRLQYVKEAH 323 (398)
T ss_pred eEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccCCcEEEEEeceeeeeEeehhhh
Confidence 222 223334556666553321 1222223345699999999 88999999999999999998888877665 56
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 630 RFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 630 ~~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
..-|+.+.|+||.+++++.+.+..+.|..+..
T Consensus 324 ~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 324 LGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 77899999999999999999988888887754
No 212
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.46 E-value=1.9e-11 Score=140.71 Aligned_cols=240 Identities=14% Similarity=0.217 Sum_probs=168.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCC--CcEEEEecCCC
Q 048801 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD--GTCRIWDARYS 362 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D--GtVrIWDl~tg 362 (1715)
...+..+.|..+...|..|+.|| .+++.................|..+-|+.. +++..+.+ ..+++.+++.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS-----LvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS-----LVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc-----eeEEEecCCCceEEEEEcccC
Confidence 44677788999999999999997 567776654332222223345666777764 34433333 45888888777
Q ss_pred CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeee
Q 048801 363 QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442 (1715)
Q Consensus 363 ~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~ 442 (1715)
..+..+..+ ..|.++.++.+ .|++.-. ..|+|||+.+.++ +.
T Consensus 79 ~~ICe~~fp--------------------------t~IL~VrmNr~--RLvV~Le-e~IyIydI~~Mkl---------Lh 120 (391)
T KOG2110|consen 79 TTICEIFFP--------------------------TSILAVRMNRK--RLVVCLE-ESIYIYDIKDMKL---------LH 120 (391)
T ss_pred ceEEEEecC--------------------------CceEEEEEccc--eEEEEEc-ccEEEEeccccee---------eh
Confidence 766665543 34777777654 3444433 3488888876322 21
Q ss_pred eecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccccccccc
Q 048801 443 VLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLK 522 (1715)
Q Consensus 443 ~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~ 522 (1715)
++..
T Consensus 121 TI~t---------------------------------------------------------------------------- 124 (391)
T KOG2110|consen 121 TIET---------------------------------------------------------------------------- 124 (391)
T ss_pred hhhc----------------------------------------------------------------------------
Confidence 1111
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEE--ecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCC
Q 048801 523 VPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAA--IMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP 600 (1715)
Q Consensus 523 ~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTg--s~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg 600 (1715)
...+..++.++.++..+.+||.- ...|.|.|||+.+.+.+..+.+|.+.+.+|+|++ +|
T Consensus 125 ------------------~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~-~G 185 (391)
T KOG2110|consen 125 ------------------TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP-DG 185 (391)
T ss_pred ------------------cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-CC
Confidence 01122233344444445555542 2368899999999999999999999999999999 89
Q ss_pred cEEEEEeCCCc-EEEEECCCCceEEEEEcccc--eEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 048801 601 RIAMSAGYDGR-TIVWDIWEGTPIRIYEIGRF--KLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 601 ~lLaSgs~DGt-I~VWDl~tgk~l~tl~~h~~--~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe 663 (1715)
.+|||++..|+ |+|+.+.+|+.+..|.-+.. .|.+++|+||+++|++++..++|+||.+..-.
T Consensus 186 ~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 186 TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 99999999997 58999999999999985543 47799999999999999999999999997654
No 213
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=2.3e-12 Score=161.57 Aligned_cols=235 Identities=15% Similarity=0.105 Sum_probs=162.1
Q ss_pred CCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCC---CcEEEEecCCCCCcceecCCCCCCCccCccC
Q 048801 306 DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD---GTCRIWDARYSQYSPRIYLPKPPDAITGKSN 382 (1715)
Q Consensus 306 DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D---GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~ 382 (1715)
+..|.|||..... ...+..|...+.+++|+|++. .|+.++.+ ..|++||+.+++.......
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~---~la~~s~~~~~~~i~i~dl~tg~~~~l~~~------------ 246 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGS---KLAYVSFENKKSQLVVHDLRSGARKVVASF------------ 246 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCC---EEEEEEecCCCcEEEEEeCCCCceEEEecC------------
Confidence 4689999985444 567777888999999999998 56665433 4799999987653211100
Q ss_pred CCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec-CCCeEEEE--eCCCCCccCCCCCceeeeeecCCCCCeeEEEEccC
Q 048801 383 VPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS-SDTFARVW--SACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGC 459 (1715)
Q Consensus 383 ~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs-~DG~IrVW--Dl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspd 459 (1715)
.....+++|+|||+.|++++ .+|.+.|| |+.++. +..+..+...+....|+|+
T Consensus 247 --------------~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~----------~~~lt~~~~~~~~~~wSpD 302 (429)
T PRK01742 247 --------------RGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT----------PSQLTSGAGNNTEPSWSPD 302 (429)
T ss_pred --------------CCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC----------eEeeccCCCCcCCEEECCC
Confidence 11133689999999888764 57766665 554321 3345566667888999998
Q ss_pred cccccccccccccccccccccCCcccCceE-EEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCc
Q 048801 460 AVASRSAMSDAFKEENVPKFKNSWFCHDNI-VTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPR 538 (1715)
Q Consensus 460 g~as~~~~~~~~~~~~~~~~~~s~~~~~~L-aSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~ 538 (1715)
+ ..| ++...+|...||++.... ...
T Consensus 303 G--------------------------~~i~f~s~~~g~~~I~~~~~~~----------------------------~~~ 328 (429)
T PRK01742 303 G--------------------------QSILFTSDRSGSPQVYRMSASG----------------------------GGA 328 (429)
T ss_pred C--------------------------CEEEEEECCCCCceEEEEECCC----------------------------CCe
Confidence 7 444 455568888999775311 000
Q ss_pred ccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC-
Q 048801 539 QRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI- 617 (1715)
Q Consensus 539 ~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl- 617 (1715)
. ...+.. ..++|+|||++|++++.++ |.+||+.+++.......+ ....+.|+| ++++|+.++.+|.+.+|.+
T Consensus 329 ~-~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sP-dG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 329 S-LVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISP-NGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred E-EecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECC-CCCEEEEEEcCCCceEEEEE
Confidence 0 111222 3468999999999887765 566999888765333222 235678999 7778888888998888876
Q ss_pred -CCCceEEEEEcccceEEEEEEcCC
Q 048801 618 -WEGTPIRIYEIGRFKLVDGKFSPD 641 (1715)
Q Consensus 618 -~tgk~l~tl~~h~~~V~svafSPD 641 (1715)
.+|..++.+..+.+.+..++|||-
T Consensus 402 ~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 402 SADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ECCCCceEEccCCCCCCCCcccCCC
Confidence 368888889877888889999985
No 214
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=1.5e-12 Score=154.14 Aligned_cols=187 Identities=19% Similarity=0.207 Sum_probs=139.3
Q ss_pred EEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE-eCCCCCeEEEEecCCCCcceEEEEecCCCcEE
Q 048801 277 CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL-RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355 (1715)
Q Consensus 277 ~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L-~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVr 355 (1715)
+.+.|.||++.|+|++|+.+|.+|++|+.|-.+.|||.-..+++..+ +||...|.++.|.|..++. .+++|..|..|+
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnr-iv~sgAgDk~i~ 120 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNR-IVLSGAGDKLIK 120 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCe-EEEeccCcceEE
Confidence 34678999999999999999999999999999999999888887776 5899999999999976543 899999999999
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCC
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDS 434 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~ 434 (1715)
++|+...+.-.. ......+......|...|..++..|++ ..|.+++.||+|+-||++.......
T Consensus 121 lfdl~~~~~~~~---------------d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 121 LFDLDSSKEGGM---------------DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred EEeccccccccc---------------ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc
Confidence 999975331100 001122234455677889999999998 8899999999999999986432111
Q ss_pred CC-CceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecC
Q 048801 435 EQ-PIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPR 504 (1715)
Q Consensus 435 ~~-~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~ 504 (1715)
.. ....+..+...--...|+..+|.. ..+|++|+.|-.+++||.+
T Consensus 186 ~~~~~~~l~ny~~~lielk~ltisp~r-------------------------p~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 186 DEDCPSILVNYNPQLIELKCLTISPSR-------------------------PYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred cccccHHHHHhchhhheeeeeeecCCC-------------------------CceEEecCCCchhhhhhhh
Confidence 00 001111111222345677777754 5799999999999999965
No 215
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.45 E-value=3.4e-11 Score=138.69 Aligned_cols=316 Identities=13% Similarity=0.123 Sum_probs=207.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCC--CeeEEEECCCCCce
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASND--FVIRVWRLPDGLPI 320 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~D--GtIrVWDl~tg~~l 320 (1715)
...|..+.|..|...|..|+.|| .++|..+..............|.-+-|+.. +||..+.+ ..+++.++..+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceE
Confidence 34577777999999999999987 578877654442222223345666777644 66665554 34889998887777
Q ss_pred EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcce
Q 048801 321 SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI 400 (1715)
Q Consensus 321 ~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~V 400 (1715)
..+. ....|.++.+..+ .|+++-.+. |.|||+++.+.+.++.... .+...+
T Consensus 82 Ce~~-fpt~IL~VrmNr~-----RLvV~Lee~-IyIydI~~MklLhTI~t~~----------------------~n~~gl 132 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNRK-----RLVVCLEES-IYIYDIKDMKLLHTIETTP----------------------PNPKGL 132 (391)
T ss_pred EEEe-cCCceEEEEEccc-----eEEEEEccc-EEEEecccceeehhhhccC----------------------CCccce
Confidence 7766 5678999999876 455555444 9999999998877664321 123346
Q ss_pred eEEEEccCCCeEEEec--CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccccc
Q 048801 401 LCCAYNANGTVFVTGS--SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPK 478 (1715)
Q Consensus 401 tslafSpdG~~LatGs--~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~ 478 (1715)
.+++++..+.+||.-+ ..|.|.|||+.+ ...+..+..|.+.+.+++|+++|
T Consensus 133 ~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n---------l~~v~~I~aH~~~lAalafs~~G------------------ 185 (391)
T KOG2110|consen 133 CALSPNNANCYLAYPGSTTSGDVVLFDTIN---------LQPVNTINAHKGPLAALAFSPDG------------------ 185 (391)
T ss_pred EeeccCCCCceEEecCCCCCceEEEEEccc---------ceeeeEEEecCCceeEEEECCCC------------------
Confidence 6666777777888543 468999999976 45677888999999999999997
Q ss_pred ccCCcccCceEEEEcCCCe-EEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC
Q 048801 479 FKNSWFCHDNIVTCSRDGS-AIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN 557 (1715)
Q Consensus 479 ~~~s~~~~~~LaSgS~DGs-IrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG 557 (1715)
.+|||++..|+ |||+.+.+++.+..+..- .....|.+++|+|++
T Consensus 186 --------~llATASeKGTVIRVf~v~~G~kl~eFRRG---------------------------~~~~~IySL~Fs~ds 230 (391)
T KOG2110|consen 186 --------TLLATASEKGTVIRVFSVPEGQKLYEFRRG---------------------------TYPVSIYSLSFSPDS 230 (391)
T ss_pred --------CEEEEeccCceEEEEEEcCCccEeeeeeCC---------------------------ceeeEEEEEEECCCC
Confidence 79999999998 589998876643322110 013468999999999
Q ss_pred CEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEE--EEEe-CCCcEEEEECCCCceEEEEEcccceE-
Q 048801 558 RFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIA--MSAG-YDGRTIVWDIWEGTPIRIYEIGRFKL- 633 (1715)
Q Consensus 558 ~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lL--aSgs-~DGtI~VWDl~tgk~l~tl~~h~~~V- 633 (1715)
.+|++.+..++|+||.+..-. ......+-....| .+.+. +++- -.+.-.+||.. +...+........
T Consensus 231 ~~L~~sS~TeTVHiFKL~~~~----~~~~~~p~~~~~~---~~~~sk~~~sylps~V~~~~~~~--R~FAt~~l~~s~~~ 301 (391)
T KOG2110|consen 231 QFLAASSNTETVHIFKLEKVS----NNPPESPTAGTSW---FGKVSKAATSYLPSQVSSVLDQS--RKFATAKLPESGRK 301 (391)
T ss_pred CeEEEecCCCeEEEEEecccc----cCCCCCCCCCCcc---cchhhhhhhhhcchhhhhhhhhc--cceeEEEccCCCcc
Confidence 999999999999999986543 1111110000000 00000 0010 01122335543 3333333222222
Q ss_pred EEEEEc--CCCCEEEEEeCCCeEEEEECCC
Q 048801 634 VDGKFS--PDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 634 ~svafS--PDG~~LAsgs~DG~I~IWdl~t 661 (1715)
..+.++ +...++.+++.||.++.|.+.-
T Consensus 302 ~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 302 NICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred ceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 223444 5788999999999999999853
No 216
>KOG1786 consensus Lysosomal trafficking regulator LYST and related BEACH and WD40 repeat proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1e-14 Score=195.77 Aligned_cols=128 Identities=13% Similarity=-0.024 Sum_probs=109.8
Q ss_pred chhhHHHHhhhhhhhhhcccccccccchhHHHHHHHHhhc--------------cC---------chhhHHHHHHHHHHh
Q 048801 22 FSSTVQEMAQLEQQDMVANQVVEADVDLREVYFLIIHFLS--------------SG---------PCQRTLGLLWNELLE 78 (1715)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~dv~~~i~ElyfLi~~fL~--------------~g---------p~~~~~~~L~ReALE 78 (1715)
|.+...+|.++.. ... .+||+++|||+|.+|+.|-+ .+ .+.++|++.||+|||
T Consensus 469 ~~s~~~~Wt~~~~---~~~-~~~i~eli~~~~~~p~~l~n~~~~~lg~~~~~~~~~~~~lP~ws~~~~~~fi~~h~~ale 544 (1081)
T KOG1786|consen 469 FHSRMQAWTPDEK---GNL-HSCIKELIPKFVNDPSFLENSVILDLGEKQNGDSVDDVILPPWSSSSPREFIRDHRKALE 544 (1081)
T ss_pred hhhhhcccCcccc---ccc-chhHHHHHHHhccChHHHhhhhhhhhhhhcccccccceecCcccccCHHHHHHHHhhccc
Confidence 3445556665552 000 36999999999999976664 11 245899999999999
Q ss_pred cCCCccccccc-----cccCCCCCCCCCCCCCcc----ccCcccccccCCCCChHHHHHHHHHHHhcCCCCCCCccCCCC
Q 048801 79 HQLLPRRYHAW-----FSRSGVNSGNDNDDGISF----PLSYNKLVERYPHIEWDHLVKLLRQLLLYKASPFHGRIGGIA 149 (1715)
Q Consensus 79 SeyVS~~LH~W-----FGyKQrG~eAv~A~NVFh----~LTYEG~Vdld~i~dp~~r~aie~QI~nFGQTP~QL~~~pHP 149 (1715)
++||+++||+| |||||.|++|+.+.|||| +++|++.||.+.+.|+....+++.++++|||+|.|++.++|+
T Consensus 545 ~~~vs~~Lh~wId~~~fgykq~g~~~~~~~nv~~~~~~~l~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~h~ 624 (1081)
T KOG1786|consen 545 SNRVSQRLHHWIDLTIFGYKQNGSAAVIAMNVFLVSNKHLFYVNSVLNLRGYDPLEQNILIVSNNHFKQTIKQLFPKKHS 624 (1081)
T ss_pred ccchhhccccceeeehhhhhhcchHHHHHHHHHhhhhhhhccccchhhhcccchhhhhhhHHHhhccccchhhccccccc
Confidence 99999999999 999999999999999999 999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 048801 150 PNAA 153 (1715)
Q Consensus 150 Pr~~ 153 (1715)
.+..
T Consensus 625 ~~~~ 628 (1081)
T KOG1786|consen 625 VSEL 628 (1081)
T ss_pred cccc
Confidence 7543
No 217
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.2e-12 Score=153.03 Aligned_cols=203 Identities=19% Similarity=0.231 Sum_probs=154.5
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeC-
Q 048801 247 YCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRG- 325 (1715)
Q Consensus 247 t~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~g- 325 (1715)
.+++|+.+|..|+||+.||++|||++.....+.....|.+.|.++.|+|||++|++.+.| ..+||++++|.+++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999998888888888899999999999999999999999 999999999987776652
Q ss_pred -CCCCeEEEEecCCCC--cceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeE
Q 048801 326 -HTGAVTAIAFSPRPS--AIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILC 402 (1715)
Q Consensus 326 -H~~~VtsLafSPdg~--~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vts 402 (1715)
.......+.|+.++. ..++++....-+.|+.|++........+ ...........|.+
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l--------------------~~~~~~~~~~siSs 286 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL--------------------RLRKKIKRFKSISS 286 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc--------------------chhhhhhccCccee
Confidence 334566788887762 2223344455667887776533211000 00111112346999
Q ss_pred EEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCC
Q 048801 403 CAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNS 482 (1715)
Q Consensus 403 lafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s 482 (1715)
++.+.+|+++|.|+.||.|.|++..+.+. ....-..|...|+.+.|+|+.
T Consensus 287 l~VS~dGkf~AlGT~dGsVai~~~~~lq~--------~~~vk~aH~~~VT~ltF~Pds---------------------- 336 (398)
T KOG0771|consen 287 LAVSDDGKFLALGTMDGSVAIYDAKSLQR--------LQYVKEAHLGFVTGLTFSPDS---------------------- 336 (398)
T ss_pred EEEcCCCcEEEEeccCCcEEEEEeceeee--------eEeehhhheeeeeeEEEcCCc----------------------
Confidence 99999999999999999999999976422 234456899999999999986
Q ss_pred cccCceEEEEcCCCeEEEEecC
Q 048801 483 WFCHDNIVTCSRDGSAIIWIPR 504 (1715)
Q Consensus 483 ~~~~~~LaSgS~DGsIrIWDl~ 504 (1715)
..+++.+.|..+.|..+.
T Consensus 337 ----r~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 337 ----RYLASVSSDNEAAVTKLA 354 (398)
T ss_pred ----CcccccccCCceeEEEEe
Confidence 567777777777776554
No 218
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=6.3e-12 Score=157.68 Aligned_cols=235 Identities=17% Similarity=0.110 Sum_probs=160.0
Q ss_pred CCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCC---CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCC
Q 048801 264 DRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASND---FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPS 340 (1715)
Q Consensus 264 DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~D---GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~ 340 (1715)
+..|.|||..... .+.+..|...|.+++|||||+.||.++.+ ..|++||+.++.... +....+...+++|+|++.
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCC
Confidence 5789999986544 56778888899999999999999987654 469999998876432 222223345789999998
Q ss_pred cceEEEEe-cCCCcEEEE--ecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec-
Q 048801 341 AIYQLLSS-SDDGTCRIW--DARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS- 416 (1715)
Q Consensus 341 ~~~~LaSg-S~DGtVrIW--Dl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs- 416 (1715)
.|+.+ +.+|.+.|| |+.++.. ..+ ..+...+.+.+|+|||+.|+.++
T Consensus 261 ---~La~~~~~~g~~~Iy~~d~~~~~~-~~l-------------------------t~~~~~~~~~~wSpDG~~i~f~s~ 311 (429)
T PRK01742 261 ---RLAFASSKDGVLNIYVMGANGGTP-SQL-------------------------TSGAGNNTEPSWSPDGQSILFTSD 311 (429)
T ss_pred ---EEEEEEecCCcEEEEEEECCCCCe-Eee-------------------------ccCCCCcCCEEECCCCCEEEEEEC
Confidence 55554 568876666 5544432 111 11233467899999999777554
Q ss_pred CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC
Q 048801 417 SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG 496 (1715)
Q Consensus 417 ~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG 496 (1715)
.+|...||++..... ....+ .+.. .++.|+|++ +.|+.++.++
T Consensus 312 ~~g~~~I~~~~~~~~--------~~~~l-~~~~--~~~~~SpDG--------------------------~~ia~~~~~~ 354 (429)
T PRK01742 312 RSGSPQVYRMSASGG--------GASLV-GGRG--YSAQISADG--------------------------KTLVMINGDN 354 (429)
T ss_pred CCCCceEEEEECCCC--------CeEEe-cCCC--CCccCCCCC--------------------------CEEEEEcCCC
Confidence 578888888753211 11112 2332 356788886 6777776665
Q ss_pred eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEEC--
Q 048801 497 SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA-- 574 (1715)
Q Consensus 497 sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl-- 574 (1715)
+.+||+.++.... +... .....+.|+|||++|++++.++.+.+|.+
T Consensus 355 -i~~~Dl~~g~~~~------------------------------lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~ 402 (429)
T PRK01742 355 -VVKQDLTSGSTEV------------------------------LSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVS 402 (429)
T ss_pred -EEEEECCCCCeEE------------------------------ecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 5558887643110 0000 01234689999999999999998888875
Q ss_pred CCCceEEEEecCCCCeEEEEEccC
Q 048801 575 VDGSLVHSLTGHSASSYVLDVHPF 598 (1715)
Q Consensus 575 ~sg~~l~tL~gH~~~V~sLafSP~ 598 (1715)
.+|..+..+.+|.+.+..++|+|.
T Consensus 403 ~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 403 ADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCceEEccCCCCCCCCcccCCC
Confidence 468889999999998999999983
No 219
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.43 E-value=3.7e-11 Score=147.04 Aligned_cols=315 Identities=13% Similarity=0.079 Sum_probs=184.9
Q ss_pred cccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEe-CCCe
Q 048801 230 VQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASAS-NDFV 308 (1715)
Q Consensus 230 ~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS-~DGt 308 (1715)
..+.+.+.++..+...-..++|+|||+++++++.||.|.++|+.+++.+.++.... ...++++|+||++|++++ ..+.
T Consensus 23 ~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~ 101 (369)
T PF02239_consen 23 GATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGT 101 (369)
T ss_dssp TTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTE
T ss_pred CCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCc
Confidence 34567788887665544557899999999999999999999999999999998644 467899999999998776 5899
Q ss_pred eEEEECCCCCceEEEeCC-------CCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCcc
Q 048801 309 IRVWRLPDGLPISVLRGH-------TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKS 381 (1715)
Q Consensus 309 IrVWDl~tg~~l~~L~gH-------~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~ 381 (1715)
|.|+|..+.++++.+... ...+.+|..+|.... ++++.-..+.|.+.|......+.....
T Consensus 102 v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~--fVv~lkd~~~I~vVdy~d~~~~~~~~i----------- 168 (369)
T PF02239_consen 102 VSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE--FVVNLKDTGEIWVVDYSDPKNLKVTTI----------- 168 (369)
T ss_dssp EEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE--EEEEETTTTEEEEEETTTSSCEEEEEE-----------
T ss_pred eeEeccccccceeecccccccccccCCCceeEEecCCCCE--EEEEEccCCeEEEEEeccccccceeee-----------
Confidence 999999999999887643 346778888888762 344445558787778765432211111
Q ss_pred CCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEe-cCCCeEEEEeCCCCCccCCCCCceeeee-ecCCCCCeeEEEEccC
Q 048801 382 NVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTG-SSDTFARVWSACKSSVEDSEQPIHELDV-LSGHENDVNYVQFSGC 459 (1715)
Q Consensus 382 ~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatG-s~DG~IrVWDl~t~~~~~~~~~~~~l~~-l~gH~~~V~sLafspd 459 (1715)
..........|+|++++++++ .....|.++|..+++.. ..+.. -..|..++..+ .+|.
T Consensus 169 -------------~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v------~~i~~g~~p~~~~~~~~-php~ 228 (369)
T PF02239_consen 169 -------------KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV------ALIDTGKKPHPGPGANF-PHPG 228 (369)
T ss_dssp -------------E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE------EEEE-SSSBEETTEEEE-EETT
T ss_pred -------------cccccccccccCcccceeeecccccceeEEEeeccceEE------EEeeccccccccccccc-cCCC
Confidence 012235678999999987664 55678999998775321 01110 01122333322 1221
Q ss_pred cccccccccccccccccccccCCcc---cCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCC
Q 048801 460 AVASRSAMSDAFKEENVPKFKNSWF---CHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGG 536 (1715)
Q Consensus 460 g~as~~~~~~~~~~~~~~~~~~s~~---~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~ 536 (1715)
. ...|. .....++.-....+.+|+..+. .
T Consensus 229 ~-------------------g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w-----------------------------k 260 (369)
T PF02239_consen 229 F-------------------GPVWATSGLGYFAIPLIGTDPVSVHDDYAW-----------------------------K 260 (369)
T ss_dssp T-------------------EEEEEEEBSSSSEEEEEE--TTT-STTTBT-----------------------------S
T ss_pred c-------------------ceEEeeccccceecccccCCccccchhhcC-----------------------------e
Confidence 1 00000 0011111111112223333321 1
Q ss_pred CcccccCCCCCeeEEEeCCCCCEEEEE----ecCCeEEEEECCCCceEEEEecC-CCCeEEEEEccCCCcEEEEEeCCC-
Q 048801 537 PRQRLLPTPRGVNMIVWSLDNRFVLAA----IMDCRICVWNAVDGSLVHSLTGH-SASSYVLDVHPFNPRIAMSAGYDG- 610 (1715)
Q Consensus 537 ~~~~l~~h~~~VtslafSPDG~~LaTg----s~DGtI~IWDl~sg~~l~tL~gH-~~~V~sLafSP~dg~lLaSgs~DG- 610 (1715)
.+..+.....+ .-+..+|++++|.+. .....|.|+|..+.+.+.++... ...+..+.|++++..+.+|....+
T Consensus 261 vv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~ 339 (369)
T PF02239_consen 261 VVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNG 339 (369)
T ss_dssp EEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TT
T ss_pred EEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCC
Confidence 22233333334 667889999999987 44579999999999888887532 335889999996666666655544
Q ss_pred cEEEEECCCCceEEEEE
Q 048801 611 RTIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 611 tI~VWDl~tgk~l~tl~ 627 (1715)
.|.|||..+.+.+..+.
T Consensus 340 ~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 340 AIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCcEEEEEEE
Confidence 89999999999998887
No 220
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=5.4e-11 Score=143.05 Aligned_cols=321 Identities=16% Similarity=0.212 Sum_probs=206.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEE-----eCC-----CeeEEEE
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASA-----SND-----FVIRVWR 313 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASG-----S~D-----GtIrVWD 313 (1715)
..++..+++++|+++|.+. +..|+|++..++..+.+.... .++++.|||.|.+|.+- ..+ ..+.+|+
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 3467788999998888764 578999999888655444433 78999999999998863 122 3577999
Q ss_pred CCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCC
Q 048801 314 LPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSN 393 (1715)
Q Consensus 314 l~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~ 393 (1715)
+.++.....+......-+++.|+.|.. |++--..+.|.+|++...+.. ..
T Consensus 112 vet~~~~s~~q~k~Q~~W~~qfs~dEs----l~arlv~nev~f~~~~~f~~~--------------------------~~ 161 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNGWVPQFSIDES----LAARLVSNEVQFYDLGSFKTI--------------------------QH 161 (566)
T ss_pred eccceehhheehhhhcCcccccccchh----hhhhhhcceEEEEecCCccce--------------------------ee
Confidence 999665555543333336899999875 333334567999998753211 11
Q ss_pred CCCCcceeEEEEccCCC--eEEE-----ecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccc
Q 048801 394 GLQSHQILCCAYNANGT--VFVT-----GSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSA 466 (1715)
Q Consensus 394 ~~h~~~VtslafSpdG~--~Lat-----Gs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~ 466 (1715)
..|...|+.+.++|.+. .+|+ ++.-+.|+||...-... .++......+ ...-..+.|++.+.
T Consensus 162 kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~---~~~~a~ksFF---kadkvqm~WN~~gt----- 230 (566)
T KOG2315|consen 162 KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ---HQPVANKSFF---KADKVQMKWNKLGT----- 230 (566)
T ss_pred eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc---cchhhhcccc---ccceeEEEeccCCc-----
Confidence 23456688899998743 3433 34567899998762211 1111111111 11122345555441
Q ss_pred ccccccccccccccCCcccCceEEEEc--CC---------CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCC
Q 048801 467 MSDAFKEENVPKFKNSWFCHDNIVTCS--RD---------GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRG 535 (1715)
Q Consensus 467 ~~~~~~~~~~~~~~~s~~~~~~LaSgS--~D---------GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g 535 (1715)
.+|+.++ -| .++.+.++. +
T Consensus 231 --------------------~LLvLastdVDktn~SYYGEq~Lyll~t~------------------------------g 260 (566)
T KOG2315|consen 231 --------------------ALLVLASTDVDKTNASYYGEQTLYLLATQ------------------------------G 260 (566)
T ss_pred --------------------eEEEEEEEeecCCCccccccceEEEEEec------------------------------C
Confidence 2222222 22 233333333 1
Q ss_pred CCcccccCCCCCeeEEEeCCCCCEEEE--EecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeC---CC
Q 048801 536 GPRQRLLPTPRGVNMIVWSLDNRFVLA--AIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGY---DG 610 (1715)
Q Consensus 536 ~~~~~l~~h~~~VtslafSPDG~~LaT--gs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~---DG 610 (1715)
.....-....++|.++.|+|+|+-+++ |-+=..|.|+|+ .+.++..+ ..++-+++-|+| .+++|+.+|- -|
T Consensus 261 ~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G 336 (566)
T KOG2315|consen 261 ESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL-RGKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPG 336 (566)
T ss_pred ceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcC-CCCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCC
Confidence 112222334788999999999987655 556678999997 45666555 456667899999 5666666664 47
Q ss_pred cEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCccc
Q 048801 611 RTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDD------VGQIYLLNTGQGESQ 665 (1715)
Q Consensus 611 tI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~------DG~I~IWdl~tGe~~ 665 (1715)
.|-|||+.+.+++..+.... .+-+.|+|||.+|+++.. |+.+.||+. +|..+
T Consensus 337 ~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l 394 (566)
T KOG2315|consen 337 DMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLL 394 (566)
T ss_pred ceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCcee
Confidence 89999999999999887443 455799999999998854 678899997 55443
No 221
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.42 E-value=1.2e-11 Score=158.20 Aligned_cols=280 Identities=16% Similarity=0.218 Sum_probs=190.4
Q ss_pred EECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 312 WRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 312 WDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
|++ .|..++.+..|...|..++.++.... ++++||.||+|++|+++....-.. ......
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s--~FvsgS~DGtVKvW~~~k~~~~~~------------------s~rS~l 1092 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTS--LFVSGSDDGTVKVWNLRKLEGEGG------------------SARSEL 1092 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCc--eEEEecCCceEEEeeehhhhcCcc------------------eeeeeE
Confidence 664 57888999999999999999987743 899999999999999864321100 000011
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC--CeeEEEEccCcccccccccc
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN--DVNYVQFSGCAVASRSAMSD 469 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~--~V~sLafspdg~as~~~~~~ 469 (1715)
.....+..+.++.+.+.|..+|+|+.||.|++.++..... .............+.. .|..-+|....
T Consensus 1093 tys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~--~~~~~~~~ri~n~~~~g~vv~m~a~~~~~--------- 1161 (1431)
T KOG1240|consen 1093 TYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNV--SKRVATQVRIPNLKKDGVVVSMHAFTAIV--------- 1161 (1431)
T ss_pred EEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccc--ccceeeeeecccccCCCceEEeecccccc---------
Confidence 1112456789999999999999999999999999865211 0000111111111111 12222222211
Q ss_pred cccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCee
Q 048801 470 AFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVN 549 (1715)
Q Consensus 470 ~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vt 549 (1715)
....++.+..-+.|..||+++... .|.. ......+.|+
T Consensus 1162 ---------------~S~~lvy~T~~~~iv~~D~r~~~~-----~w~l----------------------k~~~~hG~vT 1199 (1431)
T KOG1240|consen 1162 ---------------QSHVLVYATDLSRIVSWDTRMRHD-----AWRL----------------------KNQLRHGLVT 1199 (1431)
T ss_pred ---------------cceeEEEEEeccceEEecchhhhh-----HHhh----------------------hcCcccccee
Confidence 013788888999999999986331 1111 1223456799
Q ss_pred EEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe-cCCCCeEEEEEccCCC--cEEEEEe--CCCcEEEEECCCCceEE
Q 048801 550 MIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT-GHSASSYVLDVHPFNP--RIAMSAG--YDGRTIVWDIWEGTPIR 624 (1715)
Q Consensus 550 slafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~-gH~~~V~sLafSP~dg--~lLaSgs--~DGtI~VWDl~tgk~l~ 624 (1715)
+++.+|.+.++++|+..|.+.+||++-+.++.... ++..++..+..+|.-+ ...++++ ..+.|-+|++.+|.+..
T Consensus 1200 Si~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~ 1279 (1431)
T KOG1240|consen 1200 SIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQT 1279 (1431)
T ss_pred EEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceE
Confidence 99999999999999999999999999888887764 5668889998888665 4555544 46789999999998777
Q ss_pred EEEcccc-------------------eEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 625 IYEIGRF-------------------KLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 625 tl~~h~~-------------------~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
++..... ....+.+..-+..+.+|+.|+.|+.||....+..
T Consensus 1280 vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1280 VLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred EEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 7764310 1122344445667889999999999998766433
No 222
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=3.1e-11 Score=144.43 Aligned_cols=288 Identities=16% Similarity=0.155 Sum_probs=192.1
Q ss_pred CCCCCeEEEEECCCCCEE-EEEeCCCeeEEEECCCCCceEEEeCC-CCC-eEEEEecCCCCcceEEEEecCCCcEEEEec
Q 048801 283 GHEGDITDLAVSSNNTLV-ASASNDFVIRVWRLPDGLPISVLRGH-TGA-VTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359 (1715)
Q Consensus 283 gHs~~VtsLafSpDg~lL-ASGS~DGtIrVWDl~tg~~l~~L~gH-~~~-VtsLafSPdg~~~~~LaSgS~DGtVrIWDl 359 (1715)
.|...-+.|..+|||+|| |+|...-.|+|||+.+...- +.-| ... |.-.-.+.|-. .++.-..|.+|-+..-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~S---K~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYS---KSVFLQNDRTIEFHAK 123 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchh---hheEeecCceeeehhh
Confidence 477788999999999976 56667889999999765432 2223 233 33333343332 4555566777776543
Q ss_pred CCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC-CCeEEEecCCCeEEEEeCCCCCccCCCCCc
Q 048801 360 RYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN-GTVFVTGSSDTFARVWSACKSSVEDSEQPI 438 (1715)
Q Consensus 360 ~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd-G~~LatGs~DG~IrVWDl~t~~~~~~~~~~ 438 (1715)
.... ..+.+|. .-..++++.- ..++++| ....|+-+++..|.
T Consensus 124 ~G~h--y~~RIP~--------------------------~GRDm~y~~~scDly~~g-sg~evYRlNLEqGr-------- 166 (703)
T KOG2321|consen 124 YGRH--YRTRIPK--------------------------FGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGR-------- 166 (703)
T ss_pred cCee--eeeecCc--------------------------CCccccccCCCccEEEee-cCcceEEEEccccc--------
Confidence 2111 1111111 1234555433 3344444 45667777887654
Q ss_pred eeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccccc
Q 048801 439 HELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRA 518 (1715)
Q Consensus 439 ~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~ 518 (1715)
.+..+....+.+++|..++. +.+|++|+.+|.|-.||.++...++.+.....
T Consensus 167 -fL~P~~~~~~~lN~v~in~~--------------------------hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~- 218 (703)
T KOG2321|consen 167 -FLNPFETDSGELNVVSINEE--------------------------HGLLACGTEDGVVEFWDPRDKSRVGTLDAASS- 218 (703)
T ss_pred -cccccccccccceeeeecCc--------------------------cceEEecccCceEEEecchhhhhheeeecccc-
Confidence 34555666688999999886 47899999999999999998665444311100
Q ss_pred ccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe-cCCCCeEEEEEcc
Q 048801 519 YHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT-GHSASSYVLDVHP 597 (1715)
Q Consensus 519 ~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~-gH~~~V~sLafSP 597 (1715)
+... ........|+++.|+.+|-.+++|+.+|.|.|||+++.+++..-. +..-+|..+.|.+
T Consensus 219 ----v~s~-------------pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 219 ----VNSH-------------PGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred ----cCCC-------------ccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccc
Confidence 0000 001112349999999999999999999999999999988776543 4456788999977
Q ss_pred CCC-cEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 598 FNP-RIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 598 ~dg-~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
.++ ..|+| .....++|||-.+|+....+. ....+.++|+-|++.+++++-+++.+..|=+
T Consensus 282 ~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 282 TDQQNKVVS-MDKRILKIWDECTGKPMASIE-PTSDLNDFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred cCCCceEEe-cchHHhhhcccccCCceeecc-ccCCcCceeeecCCceEEEecCCCcceeEEc
Confidence 543 34444 455689999999999999887 4456999999999999999988776666554
No 223
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.39 E-value=1.4e-12 Score=152.81 Aligned_cols=281 Identities=12% Similarity=0.176 Sum_probs=213.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCC
Q 048801 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQY 364 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~ 364 (1715)
...-+.+.++.+|++|+.|+..|.|..+|+.++.+...+. -...|.++.|..+.. +++......+.|||-..-+
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq----~~AVAQK~y~yvYD~~GtE- 202 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQ----FFAVAQKKYVYVYDNNGTE- 202 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchH----HHHhhhhceEEEecCCCcE-
Confidence 3455678999999999999999999999999999888776 456789999988764 4445556789999864322
Q ss_pred cceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee
Q 048801 365 SPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL 444 (1715)
Q Consensus 365 l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l 444 (1715)
+..+. ....|..+.|.|..-+|++++..|.++.-|+.++++ +..+
T Consensus 203 lHClk--------------------------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl---------Va~~ 247 (545)
T KOG1272|consen 203 LHCLK--------------------------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL---------VASI 247 (545)
T ss_pred Eeehh--------------------------hcCchhhhcccchhheeeecccCCceEEEeechhhh---------hHHH
Confidence 22221 134578899999999999999999999999998764 4444
Q ss_pred cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCC
Q 048801 445 SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVP 524 (1715)
Q Consensus 445 ~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~ 524 (1715)
....+.+..+.-+|-. ..+-+|...|+|.+|...+
T Consensus 248 ~t~~G~~~vm~qNP~N--------------------------aVih~GhsnGtVSlWSP~s------------------- 282 (545)
T KOG1272|consen 248 RTGAGRTDVMKQNPYN--------------------------AVIHLGHSNGTVSLWSPNS------------------- 282 (545)
T ss_pred HccCCccchhhcCCcc--------------------------ceEEEcCCCceEEecCCCC-------------------
Confidence 5555667777777643 4777899999999997764
Q ss_pred CCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEE
Q 048801 525 PPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAM 604 (1715)
Q Consensus 525 ~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLa 604 (1715)
..++..+..|.++|.+|++.++|+|+||.+.|..|+|||++....+.++.. .-+...++||. +-++
T Consensus 283 ----------kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq---kglL 348 (545)
T KOG1272|consen 283 ----------KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQ---KGLL 348 (545)
T ss_pred ----------cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccc---ccce
Confidence 235667888999999999999999999999999999999999887777765 34556788865 3334
Q ss_pred EEeCCCcEEEEE-CCC--CceEEEEEcc--cceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 605 SAGYDGRTIVWD-IWE--GTPIRIYEIG--RFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 605 Sgs~DGtI~VWD-l~t--gk~l~tl~~h--~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
+++....|.||. .-. +..-..+-.| .+.|.++.|+|-...|-+|-..|.-.|.=.+.|+.-
T Consensus 349 A~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN 414 (545)
T KOG1272|consen 349 ALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPN 414 (545)
T ss_pred eeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCCCCC
Confidence 456666899995 222 1222222222 347899999999999999988888888877888643
No 224
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=4.1e-10 Score=141.29 Aligned_cols=234 Identities=14% Similarity=0.072 Sum_probs=151.4
Q ss_pred eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEe---cCCCcEEEEecCCCCCcceecCCCCCCCccCccCCC
Q 048801 308 VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS---SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSg---S~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~ 384 (1715)
.|.+||.+... ...+..+...+.+.+|+|+++ .|+.. ..+..|.+|++.+++.......
T Consensus 180 ~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~---~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-------------- 241 (429)
T PRK03629 180 ELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGS---KLAYVTFESGRSALVIQTLANGAVRQVASF-------------- 241 (429)
T ss_pred eEEEEcCCCCC-CEEeecCCCceeeeEEcCCCC---EEEEEEecCCCcEEEEEECCCCCeEEccCC--------------
Confidence 68899986544 445555777899999999998 44433 2345799999987653211100
Q ss_pred CCCCCCCCCCCCCcceeEEEEccCCCeEEEe-cCCC--eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcc
Q 048801 385 SNNGPSSSNGLQSHQILCCAYNANGTVFVTG-SSDT--FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAV 461 (1715)
Q Consensus 385 ~~~~~~~~~~~h~~~VtslafSpdG~~LatG-s~DG--~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~ 461 (1715)
...+..++|+|||+.|+.. +.+| .|++||+.++. +..+..+...+....|+|++
T Consensus 242 ------------~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~----------~~~lt~~~~~~~~~~wSPDG- 298 (429)
T PRK03629 242 ------------PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----------IRQVTDGRSNNTEPTWFPDS- 298 (429)
T ss_pred ------------CCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC----------EEEccCCCCCcCceEECCCC-
Confidence 1123457999999988764 3344 58889987643 22333444567789999987
Q ss_pred cccccccccccccccccccCCcccCceEEEEcC-CCeEEEE--ecCCCccCcccccccccccccCCCCCCCCCCCCCCCc
Q 048801 462 ASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR-DGSAIIW--IPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPR 538 (1715)
Q Consensus 462 as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~-DGsIrIW--Dl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~ 538 (1715)
+.|+.++. +|...|| ++.++. .
T Consensus 299 -------------------------~~I~f~s~~~g~~~Iy~~d~~~g~------------------------------~ 323 (429)
T PRK03629 299 -------------------------QNLAYTSDQAGRPQVYKVNINGGA------------------------------P 323 (429)
T ss_pred -------------------------CEEEEEeCCCCCceEEEEECCCCC------------------------------e
Confidence 55655544 4555555 444321 1
Q ss_pred ccccCCCCCeeEEEeCCCCCEEEEEecC---CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCc---E
Q 048801 539 QRLLPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGR---T 612 (1715)
Q Consensus 539 ~~l~~h~~~VtslafSPDG~~LaTgs~D---GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGt---I 612 (1715)
..+..........+|+|||++|+..+.+ ..|++||+.+++.. .+... .......|+| ++++|+.++.++. +
T Consensus 324 ~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~Sp-DG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 324 QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAP-NGTMVIYSSSQGMGSVL 400 (429)
T ss_pred EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECC-CCCEEEEEEcCCCceEE
Confidence 1111122334568999999999886644 35889999888643 34322 2234678999 6666666666654 6
Q ss_pred EEEECCCCceEEEEEcccceEEEEEEcCC
Q 048801 613 IVWDIWEGTPIRIYEIGRFKLVDGKFSPD 641 (1715)
Q Consensus 613 ~VWDl~tgk~l~tl~~h~~~V~svafSPD 641 (1715)
.+|++ +|.....+..+.+.+...+|+|-
T Consensus 401 ~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 401 NLVST-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred EEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence 77787 67777777777778888999873
No 225
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.34 E-value=7.1e-11 Score=140.66 Aligned_cols=197 Identities=12% Similarity=0.129 Sum_probs=143.8
Q ss_pred ccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee--cCCCCCeeEEEEccCcccccccccccccccccccccCCc
Q 048801 406 NANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL--SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSW 483 (1715)
Q Consensus 406 SpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l--~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~ 483 (1715)
.+.|--|++|-.-|.|.++|...... ..+... .-....|+|+.|-|..
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~-------sklfne~r~i~ktsvT~ikWvpg~----------------------- 231 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEV-------SKLFNEERLINKSSVTCIKWVPGS----------------------- 231 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHH-------HHhhhhcccccccceEEEEEEeCC-----------------------
Confidence 45676788888889999988754221 000001 1123689999999875
Q ss_pred ccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCC----CCCCCCCcccccCCCCCeeEEEeCCCCCE
Q 048801 484 FCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPP----QPPRGGPRQRLLPTPRGVNMIVWSLDNRF 559 (1715)
Q Consensus 484 ~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~g~~~~~l~~h~~~VtslafSPDG~~ 559 (1715)
...++.+-.+|.+.+||..-. .+.-...+...-.+..... ......++.......+.|+.++|||||++
T Consensus 232 --~~~Fl~a~~sGnlyly~~~~~-----~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~ 304 (636)
T KOG2394|consen 232 --DSLFLVAHASGNLYLYDKEIV-----CGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKY 304 (636)
T ss_pred --CceEEEEEecCceEEeecccc-----ccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCce
Confidence 468888889999999976310 0000000000000000000 01111445555556678999999999999
Q ss_pred EEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEc
Q 048801 560 VLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFS 639 (1715)
Q Consensus 560 LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafS 639 (1715)
||+.+.||.++|||+.+.+++..++..-+...|++||| |+++|++||.|--|.||.+..++.+..-++|...|..|+|.
T Consensus 305 LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 305 LATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 99999999999999999999888888888999999999 88999999999999999999999999999999999999998
Q ss_pred C
Q 048801 640 P 640 (1715)
Q Consensus 640 P 640 (1715)
|
T Consensus 384 p 384 (636)
T KOG2394|consen 384 P 384 (636)
T ss_pred c
Confidence 5
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=2.6e-10 Score=143.03 Aligned_cols=234 Identities=12% Similarity=0.022 Sum_probs=153.8
Q ss_pred CcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC---CCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCc
Q 048801 265 RLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN---DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSA 341 (1715)
Q Consensus 265 GtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~---DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~ 341 (1715)
..|.+||...... +.+..+...+.+.+|||||+.||..+. +..|.+|++.+|+... +....+.+..++|+|++.
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~- 255 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGS- 255 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCC-
Confidence 3688999875543 445557778999999999999987643 4579999998876433 333344456789999998
Q ss_pred ceEEE-EecCCC--cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC
Q 048801 342 IYQLL-SSSDDG--TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD 418 (1715)
Q Consensus 342 ~~~La-SgS~DG--tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D 418 (1715)
.|+ +.+.+| .|.+||+.++.... +. .+...+...+|+|||+.|+..+.+
T Consensus 256 --~La~~~~~~g~~~I~~~d~~tg~~~~-lt-------------------------~~~~~~~~~~wSPDG~~I~f~s~~ 307 (429)
T PRK03629 256 --KLAFALSKTGSLNLYVMDLASGQIRQ-VT-------------------------DGRSNNTEPTWFPDSQNLAYTSDQ 307 (429)
T ss_pred --EEEEEEcCCCCcEEEEEECCCCCEEE-cc-------------------------CCCCCcCceEECCCCCEEEEEeCC
Confidence 444 334454 58889988765321 10 012235678999999988776653
Q ss_pred -CeEEEE--eCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcC-
Q 048801 419 -TFARVW--SACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR- 494 (1715)
Q Consensus 419 -G~IrVW--Dl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~- 494 (1715)
+...|| ++.++. ...+..+...+....|+|++ +.|+..+.
T Consensus 308 ~g~~~Iy~~d~~~g~----------~~~lt~~~~~~~~~~~SpDG--------------------------~~Ia~~~~~ 351 (429)
T PRK03629 308 AGRPQVYKVNINGGA----------PQRITWEGSQNQDADVSSDG--------------------------KFMVMVSSN 351 (429)
T ss_pred CCCceEEEEECCCCC----------eEEeecCCCCccCEEECCCC--------------------------CEEEEEEcc
Confidence 444555 554432 12223333445678899987 55655443
Q ss_pred C--CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCe---E
Q 048801 495 D--GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCR---I 569 (1715)
Q Consensus 495 D--GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGt---I 569 (1715)
+ ..|.+||+.++... .+.. ........|+|||++|+.++.++. +
T Consensus 352 ~g~~~I~~~dl~~g~~~------------------------------~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 352 GGQQHIAKQDLATGGVQ------------------------------VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVL 400 (429)
T ss_pred CCCceEEEEECCCCCeE------------------------------EeCC-CCCCCCceECCCCCEEEEEEcCCCceEE
Confidence 3 35778888754311 0000 111235689999999999887764 6
Q ss_pred EEEECCCCceEEEEecCCCCeEEEEEcc
Q 048801 570 CVWNAVDGSLVHSLTGHSASSYVLDVHP 597 (1715)
Q Consensus 570 ~IWDl~sg~~l~tL~gH~~~V~sLafSP 597 (1715)
.++++ +|.....+.+|.+.+...+|+|
T Consensus 401 ~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 401 NLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 77777 6777788888888899999988
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=7.3e-10 Score=139.39 Aligned_cols=235 Identities=15% Similarity=0.066 Sum_probs=148.5
Q ss_pred CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec---CCCcEEEEecCCCCCcceecCCCCCCCccCccCC
Q 048801 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS---DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNV 383 (1715)
Q Consensus 307 GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS---~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~ 383 (1715)
..|.+||.. +.....+..+...+.+.+|+|++. .|+..+ ....|.+||+.+++......
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~---~la~~s~~~~~~~l~~~dl~~g~~~~l~~-------------- 245 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGK---KLAYVSFERGRSAIYVQDLATGQRELVAS-------------- 245 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCC---EEEEEecCCCCcEEEEEECCCCCEEEecc--------------
Confidence 468999985 555566767788899999999998 555554 23469999998765321110
Q ss_pred CCCCCCCCCCCCCCcceeEEEEccCCCeEEE-ecCCC--eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCc
Q 048801 384 PSNNGPSSSNGLQSHQILCCAYNANGTVFVT-GSSDT--FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 384 ~~~~~~~~~~~~h~~~VtslafSpdG~~Lat-Gs~DG--~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg 460 (1715)
......+++|+|+|+.|+. .+.+| .|++||+.++. +..+..+.......+|+|++
T Consensus 246 ------------~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~----------~~~lt~~~~~~~~~~~spDG 303 (433)
T PRK04922 246 ------------FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ----------LTRLTNHFGIDTEPTWAPDG 303 (433)
T ss_pred ------------CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC----------eEECccCCCCccceEECCCC
Confidence 0112346899999987754 44444 59999987653 23344454455678999987
Q ss_pred ccccccccccccccccccccCCcccCceEEEEc-CCCe--EEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCC
Q 048801 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-RDGS--AIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP 537 (1715)
Q Consensus 461 ~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-~DGs--IrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 537 (1715)
..|+.++ .+|. |.++++.++.
T Consensus 304 --------------------------~~l~f~sd~~g~~~iy~~dl~~g~------------------------------ 327 (433)
T PRK04922 304 --------------------------KSIYFTSDRGGRPQIYRVAASGGS------------------------------ 327 (433)
T ss_pred --------------------------CEEEEEECCCCCceEEEEECCCCC------------------------------
Confidence 4555444 4555 4445554322
Q ss_pred cccccCCCCCeeEEEeCCCCCEEEEEecCC---eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCC--CcE
Q 048801 538 RQRLLPTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYD--GRT 612 (1715)
Q Consensus 538 ~~~l~~h~~~VtslafSPDG~~LaTgs~DG---tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~D--GtI 612 (1715)
...+.........++|||||++|+..+.++ .|.+||+.+++.. .+. +......+.|+|++..++++.... +.|
T Consensus 328 ~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L 405 (433)
T PRK04922 328 AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVL 405 (433)
T ss_pred eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEE
Confidence 011111122344689999999998765443 6999999888765 443 223445679999544444444433 357
Q ss_pred EEEECCCCceEEEEEcccceEEEEEEcC
Q 048801 613 IVWDIWEGTPIRIYEIGRFKLVDGKFSP 640 (1715)
Q Consensus 613 ~VWDl~tgk~l~tl~~h~~~V~svafSP 640 (1715)
.++++ +|.....+..+.+.+...+|+|
T Consensus 406 ~~~~~-~g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 406 AAVST-DGRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEEC-CCCceEEcccCCCCCCCCccCC
Confidence 78887 4555666655556677788887
No 228
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.29 E-value=2e-09 Score=122.36 Aligned_cols=239 Identities=13% Similarity=0.188 Sum_probs=157.0
Q ss_pred CeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCC--CeEEEEecCCCCcceEEEEecCC------CcEEEEe
Q 048801 287 DITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTG--AVTAIAFSPRPSAIYQLLSSSDD------GTCRIWD 358 (1715)
Q Consensus 287 ~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~--~VtsLafSPdg~~~~~LaSgS~D------GtVrIWD 358 (1715)
....++|+.|..-+++|..+| .+||+++--+.......+.+ .+..+-|-.+ ++.+.||.+ ..|.|||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N----~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSN----YLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhc----eEEEecCCCCCCCCCceEEEEe
Confidence 345599999999999887775 89999875433222222222 2233333322 133444443 5799999
Q ss_pred cCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCc
Q 048801 359 ARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPI 438 (1715)
Q Consensus 359 l~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~ 438 (1715)
-....++..+.+ ..+|.++.+.++ .||+. ..+.|.||...+. .
T Consensus 82 D~k~~~i~el~f--------------------------~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n--------~ 124 (346)
T KOG2111|consen 82 DLKERCIIELSF--------------------------NSEIKAVKLRRD--RIVVV-LENKIYVYTFPDN--------P 124 (346)
T ss_pred cccCcEEEEEEe--------------------------ccceeeEEEcCC--eEEEE-ecCeEEEEEcCCC--------h
Confidence 554444444332 456889999876 34444 3688999998632 1
Q ss_pred eeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEE-EcCCCeEEEEecCCCccCcccccccc
Q 048801 439 HELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVT-CSRDGSAIIWIPRSRRSHGKVGRWTR 517 (1715)
Q Consensus 439 ~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaS-gS~DGsIrIWDl~t~~~~~~~~~~~~ 517 (1715)
+.+..+....++---++..|... ...||. |-.-|.|+|-|+.....
T Consensus 125 k~l~~~et~~NPkGlC~~~~~~~------------------------k~~LafPg~k~GqvQi~dL~~~~~--------- 171 (346)
T KOG2111|consen 125 KLLHVIETRSNPKGLCSLCPTSN------------------------KSLLAFPGFKTGQVQIVDLASTKP--------- 171 (346)
T ss_pred hheeeeecccCCCceEeecCCCC------------------------ceEEEcCCCccceEEEEEhhhcCc---------
Confidence 22222222221111222233210 123333 34568999998874220
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCe-EEEEECCCCceEEEEec--CCCCeEEEE
Q 048801 518 AYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCR-ICVWNAVDGSLVHSLTG--HSASSYVLD 594 (1715)
Q Consensus 518 ~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGt-I~IWDl~sg~~l~tL~g--H~~~V~sLa 594 (1715)
.+-..+.+|...|.|++++.+|..|||++..|+ |+|||..+|+++..++. ....|++|+
T Consensus 172 ------------------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ia 233 (346)
T KOG2111|consen 172 ------------------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIA 233 (346)
T ss_pred ------------------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEE
Confidence 122457789999999999999999999999997 79999999999999974 345799999
Q ss_pred EccCCCcEEEEEeCCCcEEEEECCC
Q 048801 595 VHPFNPRIAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 595 fSP~dg~lLaSgs~DGtI~VWDl~t 619 (1715)
||| +..+|+.++..|+|+|+.+..
T Consensus 234 FSp-~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 234 FSP-NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eCC-CccEEEEEcCCCeEEEEEeec
Confidence 999 888999999999999998865
No 229
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.28 E-value=1.2e-10 Score=138.82 Aligned_cols=245 Identities=17% Similarity=0.182 Sum_probs=159.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEE------EecCCCCCeEEEEE-----CCCCCEEEEEeCCCeeEEEE
Q 048801 245 AVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLA------SCRGHEGDITDLAV-----SSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~------tL~gHs~~VtsLaf-----SpDg~lLASGS~DGtIrVWD 313 (1715)
.++...++-.|.+|+..-. ..+.+|+...+..+. .+.+ ...+|-+| .+.+--|+.|-.-|.|.+.|
T Consensus 125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~g--t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKG--TSPTCHDFNSFTATPKGLDLLIGFTTGQVQLID 201 (636)
T ss_pred ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccC--CCCceecccccccCCCCcceEEeeccCceEEec
Confidence 3444455556666655422 357788776432211 1221 12234444 34677788888889999998
Q ss_pred CCCCCceEEEe----CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCC
Q 048801 314 LPDGLPISVLR----GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGP 389 (1715)
Q Consensus 314 l~tg~~l~~L~----gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~ 389 (1715)
.......+.+. -....|+|+.|.|.+.. .++.+-.+|.+.++|..... .
T Consensus 202 p~~~~~sklfne~r~i~ktsvT~ikWvpg~~~--~Fl~a~~sGnlyly~~~~~~---~---------------------- 254 (636)
T KOG2394|consen 202 PINFEVSKLFNEERLINKSSVTCIKWVPGSDS--LFLVAHASGNLYLYDKEIVC---G---------------------- 254 (636)
T ss_pred chhhHHHHhhhhcccccccceEEEEEEeCCCc--eEEEEEecCceEEeeccccc---c----------------------
Confidence 76522211111 13468999999998775 67788889999999872110 0
Q ss_pred CCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccc
Q 048801 390 SSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSD 469 (1715)
Q Consensus 390 ~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~ 469 (1715)
..-.+....+++..|+.....+ .. ...| +..+.--.+.|+..+|+|++
T Consensus 255 --------~t~p~~~~~k~~~~f~i~t~ks-------k~-----~rNP---v~~w~~~~g~in~f~FS~DG--------- 302 (636)
T KOG2394|consen 255 --------ATAPSYQALKDGDQFAILTSKS-------KK-----TRNP---VARWHIGEGSINEFAFSPDG--------- 302 (636)
T ss_pred --------CCCCcccccCCCCeeEEeeeec-------cc-----cCCc---cceeEeccccccceeEcCCC---------
Confidence 0001112233554444332111 00 0011 22222334589999999987
Q ss_pred cccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCee
Q 048801 470 AFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVN 549 (1715)
Q Consensus 470 ~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vt 549 (1715)
.+|++.+.||.++|||..+...++. +..--++..
T Consensus 303 -----------------~~LA~VSqDGfLRvF~fdt~eLlg~-----------------------------mkSYFGGLL 336 (636)
T KOG2394|consen 303 -----------------KYLATVSQDGFLRIFDFDTQELLGV-----------------------------MKSYFGGLL 336 (636)
T ss_pred -----------------ceEEEEecCceEEEeeccHHHHHHH-----------------------------HHhhccceE
Confidence 8999999999999999987443221 122345789
Q ss_pred EEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEcc
Q 048801 550 MIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHP 597 (1715)
Q Consensus 550 slafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP 597 (1715)
|++|||||+||++|+.|--|.||.+..++.+..-.||..+|..|+|.|
T Consensus 337 CvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 337 CVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999999999999999999999999999999999973
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1e-09 Score=138.05 Aligned_cols=234 Identities=15% Similarity=0.077 Sum_probs=153.5
Q ss_pred CcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC---CCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCc
Q 048801 265 RLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN---DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSA 341 (1715)
Q Consensus 265 GtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~---DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~ 341 (1715)
..|.+||.. |...+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.++.. ..+..+.+.+.+.+|+|++..
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCE
Confidence 478889985 4555667778889999999999999988764 46899999988865 445567778889999999973
Q ss_pred ceEEEEecCCCc--EEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-C
Q 048801 342 IYQLLSSSDDGT--CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-D 418 (1715)
Q Consensus 342 ~~~LaSgS~DGt--VrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-D 418 (1715)
++++.+.++. |.+||+.++.... +. .+.......+|+|||+.|+..+. +
T Consensus 260 --la~~~~~~g~~~Iy~~d~~~~~~~~-Lt-------------------------~~~~~~~~~~~spDG~~i~f~s~~~ 311 (435)
T PRK05137 260 --VVMSLSQGGNTDIYTMDLRSGTTTR-LT-------------------------DSPAIDTSPSYSPDGSQIVFESDRS 311 (435)
T ss_pred --EEEEEecCCCceEEEEECCCCceEE-cc-------------------------CCCCccCceeEcCCCCEEEEEECCC
Confidence 3445565655 6677887664321 11 01223456899999998887663 3
Q ss_pred C--eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC-
Q 048801 419 T--FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD- 495 (1715)
Q Consensus 419 G--~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D- 495 (1715)
| .|++||+.++. ...+..+...+....|+|++ +.|+..+.+
T Consensus 312 g~~~Iy~~d~~g~~----------~~~lt~~~~~~~~~~~SpdG--------------------------~~ia~~~~~~ 355 (435)
T PRK05137 312 GSPQLYVMNADGSN----------PRRISFGGGRYSTPVWSPRG--------------------------DLIAFTKQGG 355 (435)
T ss_pred CCCeEEEEECCCCC----------eEEeecCCCcccCeEECCCC--------------------------CEEEEEEcCC
Confidence 3 57778876532 12233334456678899987 566554432
Q ss_pred --CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC------C
Q 048801 496 --GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD------C 567 (1715)
Q Consensus 496 --GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D------G 567 (1715)
..|.+|++.++.. ..+ .....+..+.|+|||++|+..+.+ .
T Consensus 356 ~~~~i~~~d~~~~~~------------------------------~~l-t~~~~~~~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 356 GQFSIGVMKPDGSGE------------------------------RIL-TSGFLVEGPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred CceEEEEEECCCCce------------------------------Eec-cCCCCCCCCeECCCCCEEEEEEccCCCCCcc
Confidence 3577777653210 000 011235668999999998876543 3
Q ss_pred eEEEEECCCCceEEEEecCCCCeEEEEEcc
Q 048801 568 RICVWNAVDGSLVHSLTGHSASSYVLDVHP 597 (1715)
Q Consensus 568 tI~IWDl~sg~~l~tL~gH~~~V~sLafSP 597 (1715)
.|+++++..+.. ..+. ..+.+...+|+|
T Consensus 405 ~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 405 KLYTVDLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred eEEEEECCCCce-EEcc-CCCCccCcccCC
Confidence 588888865544 4444 344567778877
No 231
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=2.9e-09 Score=122.18 Aligned_cols=296 Identities=16% Similarity=0.205 Sum_probs=180.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecC-CCCCeEEEEECCCC-CEEEEEeCCCeeEEEECCCC----
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRG-HEGDITDLAVSSNN-TLVASASNDFVIRVWRLPDG---- 317 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~g-Hs~~VtsLafSpDg-~lLASGS~DGtIrVWDl~tg---- 317 (1715)
-.+..++|++.-.-+|++..|-+|+||+-.. ++...++. ....|+|++|-|.+ +-|+.|+.. -|.||.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 3467788888666678888999999999776 44445543 35689999999954 567777664 5999976421
Q ss_pred Cc--------eEEE--eCCCCCeEEEEecCCCCcceEEEEec-CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 318 LP--------ISVL--RGHTGAVTAIAFSPRPSAIYQLLSSS-DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 318 ~~--------l~~L--~gH~~~VtsLafSPdg~~~~~LaSgS-~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
.. ...+ .+| ..|++|+|.+|+. .|++++ .|..|.|||..++..++....
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt---~l~tAS~gsssi~iWdpdtg~~~pL~~~---------------- 236 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT---ILVTASFGSSSIMIWDPDTGQKIPLIPK---------------- 236 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCC---EEeecccCcceEEEEcCCCCCccccccc----------------
Confidence 11 1112 344 6899999999987 677765 467899999999886654311
Q ss_pred CCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccc
Q 048801 387 NGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSA 466 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~ 466 (1715)
..+.+.-+.|||||.+|.+++-|+..++|+.... ........+ .+.|...+|+|+|
T Consensus 237 ---------glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~--------wt~erw~lg-sgrvqtacWspcG------ 292 (445)
T KOG2139|consen 237 ---------GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQS--------WTKERWILG-SGRVQTACWSPCG------ 292 (445)
T ss_pred ---------CCCceeeEEEcCCCCEEEEecccceeeeehhccc--------ceecceecc-CCceeeeeecCCC------
Confidence 1344788999999999999999999999966432 111122222 3389999999998
Q ss_pred ccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcc-c-ccccccccccCCCCCCCCCCCCCCCcccccC-
Q 048801 467 MSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGK-V-GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLP- 543 (1715)
Q Consensus 467 ~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~- 543 (1715)
...|++++..-.+.-........... . ..+....-. .-....+..
T Consensus 293 -------------------sfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~llia-------------DL~e~ti~ag 340 (445)
T KOG2139|consen 293 -------------------SFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIA-------------DLQEVTICAG 340 (445)
T ss_pred -------------------CEEEEEEcCCceEEEEeecCCCccccCcccceeeeeec-------------cchhhhhhcC
Confidence 24555555444333222221111110 0 000000000 000001111
Q ss_pred ---CCCCeeEEEeCCCCCEEEEEecCC--------eEEEEECCCCceEEEE-ecC--CCCeEEEEEccC--CCcEEEEEe
Q 048801 544 ---TPRGVNMIVWSLDNRFVLAAIMDC--------RICVWNAVDGSLVHSL-TGH--SASSYVLDVHPF--NPRIAMSAG 607 (1715)
Q Consensus 544 ---h~~~VtslafSPDG~~LaTgs~DG--------tI~IWDl~sg~~l~tL-~gH--~~~V~sLafSP~--dg~lLaSgs 607 (1715)
-.+++.+++|.|.|.+||+.-..+ .|.+||....-.+.-. -|. ...-..|.|+|. .+.+|..+-
T Consensus 341 ~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaW 420 (445)
T KOG2139|consen 341 QRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAW 420 (445)
T ss_pred cccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEe
Confidence 145789999999999999865443 3667776554333222 111 111334556553 445666665
Q ss_pred CCCcEEEEEC
Q 048801 608 YDGRTIVWDI 617 (1715)
Q Consensus 608 ~DGtI~VWDl 617 (1715)
..|.|.-|++
T Consensus 421 sTGriq~ypl 430 (445)
T KOG2139|consen 421 STGRIQRYPL 430 (445)
T ss_pred ccCceEeeee
Confidence 6666666664
No 232
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=5.7e-10 Score=140.32 Aligned_cols=235 Identities=16% Similarity=0.079 Sum_probs=153.4
Q ss_pred CcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCC---CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCc
Q 048801 265 RLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASND---FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSA 341 (1715)
Q Consensus 265 GtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~D---GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~ 341 (1715)
..|.+||.. +...+.+..|...+.+.+|+|||+.|+.++.+ ..|.+|++.++... .+..+.+...+++|+|++..
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCE
Confidence 468999986 44455666778889999999999999988743 46999999887653 34445555668999999983
Q ss_pred ceEEEEecCCC--cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-C
Q 048801 342 IYQLLSSSDDG--TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-D 418 (1715)
Q Consensus 342 ~~~LaSgS~DG--tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-D 418 (1715)
++++.+.+| .|.+||+.+++... +. .+.......+|+|||+.|+.++. +
T Consensus 262 --l~~~~s~~g~~~Iy~~d~~~g~~~~-lt-------------------------~~~~~~~~~~~spDG~~l~f~sd~~ 313 (433)
T PRK04922 262 --LALTLSRDGNPEIYVMDLGSRQLTR-LT-------------------------NHFGIDTEPTWAPDGKSIYFTSDRG 313 (433)
T ss_pred --EEEEEeCCCCceEEEEECCCCCeEE-Cc-------------------------cCCCCccceEECCCCCEEEEEECCC
Confidence 334445555 59999988765321 10 01122456799999998887664 4
Q ss_pred Ce--EEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC-
Q 048801 419 TF--ARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD- 495 (1715)
Q Consensus 419 G~--IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D- 495 (1715)
|. |+++++.++.. ..+..+......++|+|++ +.|+..+.+
T Consensus 314 g~~~iy~~dl~~g~~----------~~lt~~g~~~~~~~~SpDG--------------------------~~Ia~~~~~~ 357 (433)
T PRK04922 314 GRPQIYRVAASGGSA----------ERLTFQGNYNARASVSPDG--------------------------KKIAMVHGSG 357 (433)
T ss_pred CCceEEEEECCCCCe----------EEeecCCCCccCEEECCCC--------------------------CEEEEEECCC
Confidence 44 66666654321 1122222344568999987 566554433
Q ss_pred C--eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC---CeEE
Q 048801 496 G--SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD---CRIC 570 (1715)
Q Consensus 496 G--sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D---GtI~ 570 (1715)
+ .|.+||+.++... .+. +......+.|+|||++|+..+.+ +.|+
T Consensus 358 ~~~~I~v~d~~~g~~~------------------------------~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~ 406 (433)
T PRK04922 358 GQYRIAVMDLSTGSVR------------------------------TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLA 406 (433)
T ss_pred CceeEEEEECCCCCeE------------------------------ECC-CCCCCCCceECCCCCEEEEEEecCCceEEE
Confidence 2 6889988764311 000 11123346899999998877653 4688
Q ss_pred EEECCCCceEEEEecCCCCeEEEEEcc
Q 048801 571 VWNAVDGSLVHSLTGHSASSYVLDVHP 597 (1715)
Q Consensus 571 IWDl~sg~~l~tL~gH~~~V~sLafSP 597 (1715)
++++ +|.....+..+.+.+..++|+|
T Consensus 407 ~~~~-~g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 407 AVST-DGRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEC-CCCceEEcccCCCCCCCCccCC
Confidence 8887 4556666766667778888887
No 233
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.25 E-value=4.6e-10 Score=127.87 Aligned_cols=290 Identities=14% Similarity=0.219 Sum_probs=185.3
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC-----ceEEEeCCC------------CCeEEEEecCCCCcceEEEE
Q 048801 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL-----PISVLRGHT------------GAVTAIAFSPRPSAIYQLLS 347 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~-----~l~~L~gH~------------~~VtsLafSPdg~~~~~LaS 347 (1715)
..-|.+|.|...|.+||+|+.+|.|.++.-.... ....++.|. ..|..+.|.++++.. .++.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a-~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA-EFLL 103 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc-EEEE
Confidence 4578999999999999999999999999643322 223344443 358899999987654 6777
Q ss_pred ecCCCcEEEEecCCCCCcce-ecCC--CCCCCccCc--------cCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec
Q 048801 348 SSDDGTCRIWDARYSQYSPR-IYLP--KPPDAITGK--------SNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS 416 (1715)
Q Consensus 348 gS~DGtVrIWDl~tg~~l~~-i~~~--~~~~~i~g~--------~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs 416 (1715)
.+.|.+|++|.+........ ...+ .++..+... ...............|...|.++.++.|+..++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 78899999998865432220 1111 011110000 00000111133445688889999999999999987
Q ss_pred CCCeEEEEeCCCCCccCCCCCceeeeee----cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEE
Q 048801 417 SDTFARVWSACKSSVEDSEQPIHELDVL----SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTC 492 (1715)
Q Consensus 417 ~DG~IrVWDl~t~~~~~~~~~~~~l~~l----~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSg 492 (1715)
.|=.|.+|++.-.. +....+..- ..-+.-|++..|+|.. -+.|+..
T Consensus 183 DdLRINLWnlei~d-----~sFnIVDIKP~nmEeLteVITsaEFhp~~-------------------------cn~f~YS 232 (433)
T KOG1354|consen 183 DDLRINLWNLEIID-----QSFNIVDIKPANMEELTEVITSAEFHPHH-------------------------CNVFVYS 232 (433)
T ss_pred cceeeeeccccccC-----CceeEEEccccCHHHHHHHHhhhccCHhH-------------------------ccEEEEe
Confidence 47889999986421 111111111 1112357777788754 3689999
Q ss_pred cCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEE
Q 048801 493 SRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVW 572 (1715)
Q Consensus 493 S~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IW 572 (1715)
+..|+|++-|++....... ....+ ..+.......-+...-..|..+.|+++|++|++-.. -+|+||
T Consensus 233 SSKGtIrLcDmR~~aLCd~---hsKlf----------Eepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~w 298 (433)
T KOG1354|consen 233 SSKGTIRLCDMRQSALCDA---HSKLF----------EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLW 298 (433)
T ss_pred cCCCcEEEeechhhhhhcc---hhhhh----------ccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEE
Confidence 9999999999985332110 00011 011111112222333456889999999999997643 589999
Q ss_pred EC-CCCceEEEEecCCC------------Ce---EEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 048801 573 NA-VDGSLVHSLTGHSA------------SS---YVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 573 Dl-~sg~~l~tL~gH~~------------~V---~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk 621 (1715)
|+ ...+++.++.-|.. .| .-++|+- +...++||++...++++++..|.
T Consensus 299 D~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 299 DLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred eccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCCc
Confidence 99 56777777776632 22 3467876 56788999999999999977664
No 234
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=6.5e-10 Score=139.49 Aligned_cols=235 Identities=16% Similarity=0.111 Sum_probs=152.1
Q ss_pred CcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCC---CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCc
Q 048801 265 RLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASND---FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSA 341 (1715)
Q Consensus 265 GtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~D---GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~ 341 (1715)
..|.+||.. |.....+..+...+.+.+|+|||+.|+.++.+ ..|.+||+.+++... +....+.+.+.+|+|++..
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 467777764 55555666788899999999999999887653 459999999887543 4444566778999999982
Q ss_pred ceEEEEecCCCcEEEEecC--CCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-C
Q 048801 342 IYQLLSSSDDGTCRIWDAR--YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-D 418 (1715)
Q Consensus 342 ~~~LaSgS~DGtVrIWDl~--tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-D 418 (1715)
.+++.+.+|...||.+. ++. ...+ ..+.......+|+|||+.|+..+. +
T Consensus 254 --la~~~~~~g~~~Iy~~d~~~~~-~~~l-------------------------t~~~~~~~~~~wSpDG~~l~f~s~~~ 305 (427)
T PRK02889 254 --LAVALSRDGNSQIYTVNADGSG-LRRL-------------------------TQSSGIDTEPFFSPDGRSIYFTSDRG 305 (427)
T ss_pred --EEEEEccCCCceEEEEECCCCC-cEEC-------------------------CCCCCCCcCeEEcCCCCEEEEEecCC
Confidence 33466778887777543 222 1111 011222456789999998876654 4
Q ss_pred CeEEEEeCC--CCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC
Q 048801 419 TFARVWSAC--KSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG 496 (1715)
Q Consensus 419 G~IrVWDl~--t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG 496 (1715)
|...||.+. ++. ...+..+........|+|++ +.|+..+.++
T Consensus 306 g~~~Iy~~~~~~g~----------~~~lt~~g~~~~~~~~SpDG--------------------------~~Ia~~s~~~ 349 (427)
T PRK02889 306 GAPQIYRMPASGGA----------AQRVTFTGSYNTSPRISPDG--------------------------KLLAYISRVG 349 (427)
T ss_pred CCcEEEEEECCCCc----------eEEEecCCCCcCceEECCCC--------------------------CEEEEEEccC
Confidence 666666653 221 11111122233457899987 5666655443
Q ss_pred ---eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC---eEE
Q 048801 497 ---SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC---RIC 570 (1715)
Q Consensus 497 ---sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG---tI~ 570 (1715)
.|.+||+.++... .+.. ......+.|+|||+.|+.++.++ .++
T Consensus 350 g~~~I~v~d~~~g~~~------------------------------~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~ 398 (427)
T PRK02889 350 GAFKLYVQDLATGQVT------------------------------ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLA 398 (427)
T ss_pred CcEEEEEEECCCCCeE------------------------------EccC-CCCccCceECCCCCEEEEEEecCCCEEEE
Confidence 6889998764311 0100 11234579999999998877554 366
Q ss_pred EEECCCCceEEEEecCCCCeEEEEEcc
Q 048801 571 VWNAVDGSLVHSLTGHSASSYVLDVHP 597 (1715)
Q Consensus 571 IWDl~sg~~l~tL~gH~~~V~sLafSP 597 (1715)
+.++ +|.....+..+.+.+...+|+|
T Consensus 399 ~~~~-~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 399 AVSS-DGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred EEEC-CCCceEEeecCCCCCCCCccCC
Confidence 6666 5777777777778888889987
No 235
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.25 E-value=7e-12 Score=126.19 Aligned_cols=95 Identities=22% Similarity=0.303 Sum_probs=83.3
Q ss_pred HHhhhhccccchhhhhHHHHHHh--hhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHH
Q 048801 1621 NKLEQSVSRKQDYYGIQRLNEAA--QKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALS 1698 (1715)
Q Consensus 1621 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~ 1698 (1715)
..+.......+.+..|..+++.. ..++|...+..|||++||++||++++|+++.++..|+++|++||.+||.|++.|.
T Consensus 11 ~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~ 90 (107)
T cd05497 11 KVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNKPGDDVV 90 (107)
T ss_pred HHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 33333334456677788887754 5799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcC
Q 048801 1699 AKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1699 ~~~~~l~~~~~~~i~~~ 1715 (1715)
.+|+.|.+.|.+.+.+|
T Consensus 91 ~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 91 LMAQTLEKLFLQKLAQM 107 (107)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999999999887
No 236
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=9.9e-10 Score=131.82 Aligned_cols=286 Identities=12% Similarity=0.126 Sum_probs=192.1
Q ss_pred CCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCc
Q 048801 241 GHRDAVYCAIFDRSGRFV-ITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLP 319 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~L-aTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~ 319 (1715)
+|....+.|..+|||+|| |||..-..|++||+....+...-.--...|.-.-++.|-..++.-..|.+|-+..- -|..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G~h 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YGRH 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh-cCee
Confidence 588888999999999986 56667889999999865443222212334555556667667777778888877653 2221
Q ss_pred eEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcc
Q 048801 320 ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ 399 (1715)
Q Consensus 320 l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~ 399 (1715)
. .++ -...-..++++.-.. -|++++....|+-+++..|.++..+.. ....
T Consensus 128 y-~~R-IP~~GRDm~y~~~sc---Dly~~gsg~evYRlNLEqGrfL~P~~~-------------------------~~~~ 177 (703)
T KOG2321|consen 128 Y-RTR-IPKFGRDMKYHKPSC---DLYLVGSGSEVYRLNLEQGRFLNPFET-------------------------DSGE 177 (703)
T ss_pred e-eee-cCcCCccccccCCCc---cEEEeecCcceEEEEcccccccccccc-------------------------cccc
Confidence 1 111 112234556654443 245555556688889998887665433 1355
Q ss_pred eeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC-----CeeEEEEccCccccccccccccccc
Q 048801 400 ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN-----DVNYVQFSGCAVASRSAMSDAFKEE 474 (1715)
Q Consensus 400 VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~-----~V~sLafspdg~as~~~~~~~~~~~ 474 (1715)
+++|..++-..+|++|+.+|.|..||.++........ .......|.+ .|+++.|+.+|
T Consensus 178 lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~---~~~~v~s~pg~~~~~svTal~F~d~g-------------- 240 (703)
T KOG2321|consen 178 LNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLD---AASSVNSHPGGDAAPSVTALKFRDDG-------------- 240 (703)
T ss_pred ceeeeecCccceEEecccCceEEEecchhhhhheeee---cccccCCCccccccCcceEEEecCCc--------------
Confidence 8999999999999999999999999998754322111 1111222333 49999999876
Q ss_pred ccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC
Q 048801 475 NVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS 554 (1715)
Q Consensus 475 ~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS 554 (1715)
=.+++|+.+|.+.|||+++.+.+. ..-.....+|..+.|.
T Consensus 241 ------------L~~aVGts~G~v~iyDLRa~~pl~----------------------------~kdh~~e~pi~~l~~~ 280 (703)
T KOG2321|consen 241 ------------LHVAVGTSTGSVLIYDLRASKPLL----------------------------VKDHGYELPIKKLDWQ 280 (703)
T ss_pred ------------eeEEeeccCCcEEEEEcccCCcee----------------------------ecccCCccceeeeccc
Confidence 489999999999999999754211 1112234467888887
Q ss_pred CC--CCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 555 LD--NRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 555 PD--G~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
+. +..|++. ....++|||-.+|+....+..... ++.+++-| +.-++++|-.++.+..|=+
T Consensus 281 ~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~-lND~C~~p-~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 281 DTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSD-LNDFCFVP-GSGMFFTANESSKMHTYYI 342 (703)
T ss_pred ccCCCceEEec-chHHhhhcccccCCceeeccccCC-cCceeeec-CCceEEEecCCCcceeEEc
Confidence 65 3344433 456799999999999888875444 89999999 6667777877776666554
No 237
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=7.9e-10 Score=138.78 Aligned_cols=240 Identities=15% Similarity=0.123 Sum_probs=148.9
Q ss_pred CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecC---CCcEEEEecCCCCCcceecCCCCCCCccCccCC
Q 048801 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD---DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNV 383 (1715)
Q Consensus 307 GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~---DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~ 383 (1715)
..|.+||. +|.....+..+...+.+.+|+|+++ .|+..+. ...|.+||+.+++.......
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~---~la~~s~~~~~~~I~~~dl~~g~~~~l~~~------------- 238 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGT---KLAYVSFESKKPVVYVHDLATGRRRVVANF------------- 238 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCC---EEEEEEccCCCcEEEEEECCCCCEEEeecC-------------
Confidence 35777776 4555666667888999999999997 5555443 34599999987753221100
Q ss_pred CCCCCCCCCCCCCCcceeEEEEccCCCeEE-EecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccc
Q 048801 384 PSNNGPSSSNGLQSHQILCCAYNANGTVFV-TGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVA 462 (1715)
Q Consensus 384 ~~~~~~~~~~~~h~~~VtslafSpdG~~La-tGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~a 462 (1715)
...+.+.+|+|||+.|+ +.+.+|...||.+.... .....+..+...+....|+|++
T Consensus 239 -------------~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~--------~~~~~lt~~~~~~~~~~wSpDG-- 295 (427)
T PRK02889 239 -------------KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADG--------SGLRRLTQSSGIDTEPFFSPDG-- 295 (427)
T ss_pred -------------CCCccceEECCCCCEEEEEEccCCCceEEEEECCC--------CCcEECCCCCCCCcCeEEcCCC--
Confidence 12245789999998876 45677776676653210 1123344455556678899987
Q ss_pred ccccccccccccccccccCCcccCceEE-EEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccc
Q 048801 463 SRSAMSDAFKEENVPKFKNSWFCHDNIV-TCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRL 541 (1715)
Q Consensus 463 s~~~~~~~~~~~~~~~~~~s~~~~~~La-SgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l 541 (1715)
+.|+ ++..+|...||.+.... .....+
T Consensus 296 ------------------------~~l~f~s~~~g~~~Iy~~~~~~----------------------------g~~~~l 323 (427)
T PRK02889 296 ------------------------RSIYFTSDRGGAPQIYRMPASG----------------------------GAAQRV 323 (427)
T ss_pred ------------------------CEEEEEecCCCCcEEEEEECCC----------------------------CceEEE
Confidence 4555 44445677777654210 000011
Q ss_pred cCCCCCeeEEEeCCCCCEEEEEecCC---eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCc--EEEEE
Q 048801 542 LPTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGR--TIVWD 616 (1715)
Q Consensus 542 ~~h~~~VtslafSPDG~~LaTgs~DG---tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGt--I~VWD 616 (1715)
..........+|||||++|+..+.++ .|.+||+.+++... +..+ .....+.|+|++..++++....|. +.+.+
T Consensus 324 t~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~ 401 (427)
T PRK02889 324 TFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVS 401 (427)
T ss_pred ecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEE
Confidence 11112233578999999998877654 69999998887543 3322 234678999955555555544444 45556
Q ss_pred CCCCceEEEEEcccceEEEEEEcCC
Q 048801 617 IWEGTPIRIYEIGRFKLVDGKFSPD 641 (1715)
Q Consensus 617 l~tgk~l~tl~~h~~~V~svafSPD 641 (1715)
+ +|.....+..+.+.+...+|+|-
T Consensus 402 ~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 402 S-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred C-CCCceEEeecCCCCCCCCccCCC
Confidence 5 56666666656667777888874
No 238
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.22 E-value=2.8e-10 Score=129.91 Aligned_cols=335 Identities=17% Similarity=0.190 Sum_probs=228.3
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe-CCCCcEEEEec-CCCCCeEEEEECCCCCEEEEEeCCCeeE
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWS-METAFCLASCR-GHEGDITDLAVSSNNTLVASASNDFVIR 310 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWD-l~tgk~l~tL~-gHs~~VtsLafSpDg~lLASGS~DGtIr 310 (1715)
...+..++||.+.|+....-|-..-+++.+.|.+++||- .+.++.-..+. ....+++++.+.++...|++|-..|++.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 345677899999999999999888899999999999995 34444433332 2456889999999999999999999999
Q ss_pred EEECC----CCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 311 VWRLP----DGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 311 VWDl~----tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
-+.+. ....++....|...|..+.|+-... .+++.+.|..+.-.-.+.+..+....+....
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e---~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~------------ 158 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE---WVLSTGKDKQFAWHCTESGNRLGGYNFETPA------------ 158 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCce---eEEEeccccceEEEeeccCCcccceEeeccC------------
Confidence 88664 3345566678999999999998766 7899999887765444444432222111110
Q ss_pred CCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccc
Q 048801 387 NGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSA 466 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~ 466 (1715)
+++.|.-. +..+|...|.|.+-.+... ....+..+.+|.+.+.++.|.+..
T Consensus 159 --------------t~~~~d~~--~~fvGd~~gqvt~lr~~~~-------~~~~i~~~~~h~~~~~~l~Wd~~~------ 209 (404)
T KOG1409|consen 159 --------------SALQFDAL--YAFVGDHSGQITMLKLEQN-------GCQLITTFNGHTGEVTCLKWDPGQ------ 209 (404)
T ss_pred --------------CCCceeeE--EEEecccccceEEEEEeec-------CCceEEEEcCcccceEEEEEcCCC------
Confidence 01111111 4445555666665555322 245678899999999999999864
Q ss_pred ccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCC
Q 048801 467 MSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPR 546 (1715)
Q Consensus 467 ~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~ 546 (1715)
..|.+|..|..+.+||+-..+ +....+.+|..
T Consensus 210 --------------------~~LfSg~~d~~vi~wdigg~~----------------------------g~~~el~gh~~ 241 (404)
T KOG1409|consen 210 --------------------RLLFSGASDHSVIMWDIGGRK----------------------------GTAYELQGHND 241 (404)
T ss_pred --------------------cEEEeccccCceEEEeccCCc----------------------------ceeeeeccchh
Confidence 799999999999999987432 23345677888
Q ss_pred CeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEE-----------------------------EEecC----CCCeEEE
Q 048801 547 GVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVH-----------------------------SLTGH----SASSYVL 593 (1715)
Q Consensus 547 ~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~-----------------------------tL~gH----~~~V~sL 593 (1715)
.|..+..-+--+.+++++.||.|.+|++....... -++-| -+...+.
T Consensus 242 kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~ 321 (404)
T KOG1409|consen 242 KVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCG 321 (404)
T ss_pred hhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCc
Confidence 88888888888899999999999999986532110 00011 1111111
Q ss_pred EEccCCCcEEEEEeCCCcEEEE--------ECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 594 DVHPFNPRIAMSAGYDGRTIVW--------DIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 594 afSP~dg~lLaSgs~DGtI~VW--------Dl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
..+. ......+-+..-.+++- |. +..+++++...+..|+.+.+..+-.+|++++.|..|+|||+..
T Consensus 322 ~c~s-~~~~~p~mg~e~~vR~~~~c~~~i~~~-~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 322 KCSS-NRSSYPTMGFEFSVRVCDSCYPTIKDE-ERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred cccc-CccccccccceeEEEEecccchhhhcC-CCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 1111 11111222222234443 33 3355777766667899999999999999999999999999853
No 239
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.22 E-value=9.7e-09 Score=122.60 Aligned_cols=322 Identities=15% Similarity=0.155 Sum_probs=206.0
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCC-----------
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDF----------- 307 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DG----------- 307 (1715)
+..-.-++..+.|||-|.+|++.... -|.+|....+..+..+. ...|..+.|||.++||.+-+..+
T Consensus 28 ~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 28 FESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred ccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCc
Confidence 34456678899999999999988654 59999987766555555 35699999999999999875433
Q ss_pred ----eeEEEECCCCCceEEEeCCCCC--eE-EEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCc
Q 048801 308 ----VIRVWRLPDGLPISVLRGHTGA--VT-AIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGK 380 (1715)
Q Consensus 308 ----tIrVWDl~tg~~l~~L~gH~~~--Vt-sLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~ 380 (1715)
.+.|||+.+|..+..+.+-..+ .+ -+.|+-+.....++ ....+.|+++ ++..... +.
T Consensus 105 ~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv----v~~sl~i~e~-t~n~~~~-----p~------ 168 (561)
T COG5354 105 TSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV----VGSSLYIHEI-TDNIEEH-----PF------ 168 (561)
T ss_pred cccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh----ccCeEEEEec-CCccccC-----ch------
Confidence 4999999999999988766655 45 67888887632222 2345899987 4332110 00
Q ss_pred cCCCCCCCCCCCCCCCCcceeEEEEccCCC--eEEE-----ecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeE
Q 048801 381 SNVPSNNGPSSSNGLQSHQILCCAYNANGT--VFVT-----GSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNY 453 (1715)
Q Consensus 381 ~~~~~~~~~~~~~~~h~~~VtslafSpdG~--~Lat-----Gs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~s 453 (1715)
.......|...+|+|.|+ .||. +...+.++||.+...+. ... ..+. ...-..
T Consensus 169 ------------~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~------l~t-k~lf--k~~~~q 227 (561)
T COG5354 169 ------------KNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV------LVT-KNLF--KVSGVQ 227 (561)
T ss_pred ------------hhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe------eee-eeeE--eecccE
Confidence 011134578888888643 3442 45678889998864332 111 1111 111224
Q ss_pred EEEccCcccccccccccccccccccccCCcccCceEEEE-----------cCCCeEEEEecCCCccCccccccccccccc
Q 048801 454 VQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTC-----------SRDGSAIIWIPRSRRSHGKVGRWTRAYHLK 522 (1715)
Q Consensus 454 Lafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSg-----------S~DGsIrIWDl~t~~~~~~~~~~~~~~~l~ 522 (1715)
+.|.+.| ++|+.- -....+.|+++...
T Consensus 228 LkW~~~g--------------------------~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~---------------- 265 (561)
T COG5354 228 LKWQVLG--------------------------KYLLVLVMTHTKSNKSYFGESNLYLLRITER---------------- 265 (561)
T ss_pred EEEecCC--------------------------ceEEEEEEEeeecccceeccceEEEEeeccc----------------
Confidence 5555544 111110 01123445544321
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEE--ecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCC
Q 048801 523 VPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAA--IMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP 600 (1715)
Q Consensus 523 ~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTg--s~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg 600 (1715)
.+.......++|..++|.|.++.+++. -.+..+.++|++.. +...+ ....-+.+.|+| ..
T Consensus 266 --------------~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp-~~ 327 (561)
T COG5354 266 --------------SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSP-HE 327 (561)
T ss_pred --------------ccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccC-cc
Confidence 111112446789999999998877654 47888999998665 33333 344446788999 66
Q ss_pred cEEEEEeCC---CcEEEEECCCCceEE-EEEcccceEEEEEEcCCCCEEEEEe------CCCeEEEEECCCC
Q 048801 601 RIAMSAGYD---GRTIVWDIWEGTPIR-IYEIGRFKLVDGKFSPDGTSIVLSD------DVGQIYLLNTGQG 662 (1715)
Q Consensus 601 ~lLaSgs~D---GtI~VWDl~tgk~l~-tl~~h~~~V~svafSPDG~~LAsgs------~DG~I~IWdl~tG 662 (1715)
++++.+|-| |.|-+||......+. .+.+. ...-+.|||||+++.+.. .|..|.||++...
T Consensus 328 r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 328 RYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred cEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 777776655 689999987654444 56533 345678999999988763 3788999998543
No 240
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.21 E-value=7.9e-10 Score=125.10 Aligned_cols=322 Identities=13% Similarity=0.112 Sum_probs=197.8
Q ss_pred EEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceec
Q 048801 290 DLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIY 369 (1715)
Q Consensus 290 sLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~ 369 (1715)
-++|||+|++||+++.- .+.|-|..+-+..+.+.. -..|.-|.|..+.- +.|.....++.|.+|++...+....+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~--~ilC~~yk~~~vqvwsl~Qpew~ckId 88 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSC--HILCVAYKDPKVQVWSLVQPEWYCKID 88 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccce--eeeeeeeccceEEEEEeecceeEEEec
Confidence 35799999999999876 788888877665544432 35677888988765 256677889999999998665444332
Q ss_pred CCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeE-EEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCC
Q 048801 370 LPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVF-VTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE 448 (1715)
Q Consensus 370 ~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~L-atGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~ 448 (1715)
. ....+..++|||+|+.| .+..-+-.|.||.+.+.+. ..+....
T Consensus 89 e-------------------------g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~----------~~~~~pK 133 (447)
T KOG4497|consen 89 E-------------------------GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG----------YLLPHPK 133 (447)
T ss_pred c-------------------------CCCcceeeeECCCcceEeeeecceeEEEEEEecccee----------EEecccc
Confidence 1 23457899999999655 5556688999999987542 2233334
Q ss_pred CCeeEEEEccCcccccccccccccccccccc-cCCc----------ccCceEEEEcCCCeEEEEecCCCccCcccccccc
Q 048801 449 NDVNYVQFSGCAVASRSAMSDAFKEENVPKF-KNSW----------FCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTR 517 (1715)
Q Consensus 449 ~~V~sLafspdg~as~~~~~~~~~~~~~~~~-~~s~----------~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~ 517 (1715)
..+..++|+++|......... ...+....+ ...| .+-.-|--.-.+..+.+||.--
T Consensus 134 ~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L------------ 200 (447)
T KOG4497|consen 134 TNVKGYAFHPDGQFCAILSRR-DCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL------------ 200 (447)
T ss_pred cCceeEEECCCCceeeeeecc-cHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh------------
Confidence 466888999987321110000 000000000 0000 0001111112233455564321
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCce------------------
Q 048801 518 AYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL------------------ 579 (1715)
Q Consensus 518 ~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~------------------ 579 (1715)
... .-...-.-++..++|+|.+++|++|+.|+.++|.+--+.+.
T Consensus 201 --eyk----------------v~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~ 262 (447)
T KOG4497|consen 201 --EYK----------------VYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLL 262 (447)
T ss_pred --hhe----------------eeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhh
Confidence 000 00111234688899999999999999999988865433110
Q ss_pred ------------------------------------------EEEEec------CCCCeEEEEEccCCCcEEEEEeC--C
Q 048801 580 ------------------------------------------VHSLTG------HSASSYVLDVHPFNPRIAMSAGY--D 609 (1715)
Q Consensus 580 ------------------------------------------l~tL~g------H~~~V~sLafSP~dg~lLaSgs~--D 609 (1715)
++.++. ....+.-++|++ |..+++|-.. -
T Consensus 263 ~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~P 341 (447)
T KOG4497|consen 263 EKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKYP 341 (447)
T ss_pred hhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCCCC
Confidence 111110 112355688999 7788877543 3
Q ss_pred CcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccc-----cccceeecCCCccEEE
Q 048801 610 GRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKD-----AKYDQFFLGDYRPLIR 683 (1715)
Q Consensus 610 GtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~-----~~~~~~fs~D~r~L~~ 683 (1715)
+.+.|||+..-+....+. ...+|....|.|....|+.+....++++|...-.....- .....-|+-+|.-++.
T Consensus 342 nalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l 419 (447)
T KOG4497|consen 342 NALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVL 419 (447)
T ss_pred ceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEE
Confidence 679999998877666665 456899999999999999998888999998754332211 1123345556655544
No 241
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=4.3e-10 Score=130.47 Aligned_cols=273 Identities=13% Similarity=0.136 Sum_probs=181.5
Q ss_pred CCCeEEEEECCCC--CEEEEEeCCCeeEEEECCCCCceEE------EeCCCCCeEEEEecCCCCcceEEEEecCCCcEEE
Q 048801 285 EGDITDLAVSSNN--TLVASASNDFVIRVWRLPDGLPISV------LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356 (1715)
Q Consensus 285 s~~VtsLafSpDg--~lLASGS~DGtIrVWDl~tg~~l~~------L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrI 356 (1715)
...|+.++|.-++ ..|...+.+..+....+........ .....+.|..++.... .|++|-.+|.+.+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg-----~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADG-----TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCC-----EEEEEecCCcEEE
Confidence 4467777776554 3444444666677666665544433 3345567777776543 6899999999999
Q ss_pred EecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCC--CeEEEEeCCCCCccC
Q 048801 357 WDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSD--TFARVWSACKSSVED 433 (1715)
Q Consensus 357 WDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~D--G~IrVWDl~t~~~~~ 433 (1715)
|....+....... .......++..+.-++.. .++++|+.. ..+.|||+...+...
T Consensus 130 ~~~k~~d~hss~l----------------------~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw 187 (412)
T KOG3881|consen 130 RHDKSGDLHSSKL----------------------IKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIW 187 (412)
T ss_pred EeccCCccccccc----------------------eeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeee
Confidence 9987554211000 000112334555555544 456668888 889999997643211
Q ss_pred CCCCceeeeeec-CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccc
Q 048801 434 SEQPIHELDVLS-GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKV 512 (1715)
Q Consensus 434 ~~~~~~~l~~l~-gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~ 512 (1715)
....... ..+. .-.-.++.+.|.+.. .+..|++++.-+.+++||++.++
T Consensus 188 ~aKNvpn-D~L~LrVPvW~tdi~Fl~g~------------------------~~~~fat~T~~hqvR~YDt~~qR----- 237 (412)
T KOG3881|consen 188 SAKNVPN-DRLGLRVPVWITDIRFLEGS------------------------PNYKFATITRYHQVRLYDTRHQR----- 237 (412)
T ss_pred eccCCCC-ccccceeeeeeccceecCCC------------------------CCceEEEEecceeEEEecCcccC-----
Confidence 1110000 0000 001134556665532 14689999999999999998644
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEE-EecCCCCeE
Q 048801 513 GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHS-LTGHSASSY 591 (1715)
Q Consensus 513 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~t-L~gH~~~V~ 591 (1715)
.++..+.-...+|+++...|+|++|++|..-|.+..||++.++++.. +.+-.+.|+
T Consensus 238 -----------------------RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsir 294 (412)
T KOG3881|consen 238 -----------------------RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIR 294 (412)
T ss_pred -----------------------cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcc
Confidence 23444445577899999999999999999999999999999999887 889999999
Q ss_pred EEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEc
Q 048801 592 VLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFS 639 (1715)
Q Consensus 592 sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafS 639 (1715)
+|..+| ...+++++|-|..|+|+|+.+.+++.... -...++.+.+.
T Consensus 295 sih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~ 340 (412)
T KOG3881|consen 295 SIHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLR 340 (412)
T ss_pred eEEEcC-CCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEec
Confidence 999999 77899999999999999999876665443 12334444443
No 242
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=1.7e-09 Score=124.12 Aligned_cols=238 Identities=16% Similarity=0.226 Sum_probs=155.0
Q ss_pred CCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEc
Q 048801 327 TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYN 406 (1715)
Q Consensus 327 ~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafS 406 (1715)
...+..++|++.-. .++++..|-+|++|+-.. .....+. ......|+|++|-
T Consensus 98 ~~dlr~~aWhqH~~---~fava~nddvVriy~kss-t~pt~Lk------------------------s~sQrnvtclawR 149 (445)
T KOG2139|consen 98 EIDLRGVAWHQHII---AFAVATNDDVVRIYDKSS-TCPTKLK------------------------SVSQRNVTCLAWR 149 (445)
T ss_pred hcceeeEeechhhh---hhhhhccCcEEEEeccCC-CCCceec------------------------chhhcceeEEEec
Confidence 34577889998543 789999999999998765 2222211 1224569999999
Q ss_pred cCC-CeEEEecCCCeEEEEeCCCCCc-cCC--CCCce--eeeeecCCCCCeeEEEEccCccccccccccccccccccccc
Q 048801 407 ANG-TVFVTGSSDTFARVWSACKSSV-EDS--EQPIH--ELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFK 480 (1715)
Q Consensus 407 pdG-~~LatGs~DG~IrVWDl~t~~~-~~~--~~~~~--~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~ 480 (1715)
|.+ ..|++|+. +.|.||....... ... ..... .+....+| .+|++++|.++|
T Consensus 150 PlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg-------------------- 207 (445)
T KOG2139|consen 150 PLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG-------------------- 207 (445)
T ss_pred cCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCC--------------------
Confidence 965 57788876 5588998754211 000 00111 12233455 689999999987
Q ss_pred CCcccCceEEEEc-CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCE
Q 048801 481 NSWFCHDNIVTCS-RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRF 559 (1715)
Q Consensus 481 ~s~~~~~~LaSgS-~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~ 559 (1715)
..+++++ .|..|.|||++++..... .....++++.+.|||||.+
T Consensus 208 ------t~l~tAS~gsssi~iWdpdtg~~~pL-----------------------------~~~glgg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 208 ------TILVTASFGSSSIMIWDPDTGQKIPL-----------------------------IPKGLGGFSLLKWSPDGDV 252 (445)
T ss_pred ------CEEeecccCcceEEEEcCCCCCcccc-----------------------------cccCCCceeeEEEcCCCCE
Confidence 5777776 467899999997652211 1234567899999999999
Q ss_pred EEEEecCCeEEEEECC-CCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC--Cc-----------eEEE
Q 048801 560 VLAAIMDCRICVWNAV-DGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE--GT-----------PIRI 625 (1715)
Q Consensus 560 LaTgs~DGtI~IWDl~-sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t--gk-----------~l~t 625 (1715)
|+++.-|+..++|+.. +....+-.. ..+.|....|+|.+..+|++++..-.|+--.... +. ++..
T Consensus 253 lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaD 331 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIAD 331 (445)
T ss_pred EEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeecc
Confidence 9999999999999543 333333333 3448999999997777777766444433222211 00 1111
Q ss_pred EE-----cc----cceEEEEEEcCCCCEEEEEeC
Q 048801 626 YE-----IG----RFKLVDGKFSPDGTSIVLSDD 650 (1715)
Q Consensus 626 l~-----~h----~~~V~svafSPDG~~LAsgs~ 650 (1715)
+. .+ -+++.+++|.|.|.+||+.-.
T Consensus 332 L~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 332 LQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred chhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 11 11 356789999999999998754
No 243
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.18 E-value=2.8e-11 Score=121.37 Aligned_cols=100 Identities=14% Similarity=0.123 Sum_probs=89.5
Q ss_pred HHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhcc
Q 048801 1612 SRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYF 1691 (1715)
Q Consensus 1612 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n 1691 (1715)
-|++|+..+.++.. .+....|..+++....++|...+..|||++||++||+++.|++++++..|+++|++||.+||
T Consensus 4 ~~~~~~~il~~l~~----~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 79 (104)
T cd05507 4 WKKAILLVYRTLAS----HRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYN 79 (104)
T ss_pred HHHHHHHHHHHHHc----CCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 36778888888755 35566677777777789999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1692 IKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1692 ~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
.+++.+..+|+.|.+.+.+.|.++
T Consensus 80 ~~~s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 80 SSDHDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999998764
No 244
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.18 E-value=4.5e-09 Score=119.54 Aligned_cols=117 Identities=14% Similarity=0.235 Sum_probs=95.7
Q ss_pred CCeeEEEeCCCCCEEEE-EecCCeEEEEECCCCce--EEEEecCCCCeEEEEEccCCCcEEEEEeCCCc-EEEEECCCCc
Q 048801 546 RGVNMIVWSLDNRFVLA-AIMDCRICVWNAVDGSL--VHSLTGHSASSYVLDVHPFNPRIAMSAGYDGR-TIVWDIWEGT 621 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaT-gs~DGtI~IWDl~sg~~--l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGt-I~VWDl~tgk 621 (1715)
.++.+++-..+..+||. |-.-|.|.|-|+...+. ...+.+|...|.|++.+- +|.++||++..|+ |+|||..+|+
T Consensus 137 kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~ 215 (346)
T KOG2111|consen 137 KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGT 215 (346)
T ss_pred CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCc
Confidence 34444443444455555 44568999999977655 478899999999999998 8899999999997 6999999999
Q ss_pred eEEEEEcc--cceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 048801 622 PIRIYEIG--RFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 622 ~l~tl~~h--~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe 663 (1715)
.+..+.-+ +..|.+++||||+.+||++++.|+|+||.+....
T Consensus 216 ~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 216 LLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 99999854 4569999999999999999999999999986543
No 245
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.17 E-value=3.5e-11 Score=120.41 Aligned_cols=86 Identities=19% Similarity=0.340 Sum_probs=79.4
Q ss_pred cchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHH
Q 048801 1630 KQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFN 1709 (1715)
Q Consensus 1630 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~ 1709 (1715)
......|..+++....++|...+..||++.||++||+++.|++++++..|+++|++||.+||.+++.+..+|+.|.+.|.
T Consensus 16 ~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~~a~~l~~~f~ 95 (101)
T cd05509 16 HKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDTEYYKCANKLEKFFW 95 (101)
T ss_pred CCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 35556677777777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC
Q 048801 1710 RTLNKL 1715 (1715)
Q Consensus 1710 ~~i~~~ 1715 (1715)
+++++|
T Consensus 96 ~~~~~~ 101 (101)
T cd05509 96 KKLKEL 101 (101)
T ss_pred HHHhhC
Confidence 999875
No 246
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=5.1e-09 Score=127.33 Aligned_cols=390 Identities=13% Similarity=0.137 Sum_probs=249.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---------------cEEEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA---------------FCLASCRGHEGDITDLAVSSNNTLVASASNDF 307 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg---------------k~l~tL~gHs~~VtsLafSpDg~lLASGS~DG 307 (1715)
.....|++|.....|||.||.||.++|-.+.+. ..-++|.||.+.|.-+.|+.+.+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 345789999999999999999999999987643 12356889999999999999999999999999
Q ss_pred eeEEEECCCCCceEEE--eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCC
Q 048801 308 VIRVWRLPDGLPISVL--RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L--~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
.|.||-+-.|.-.... ....+.|.+++|..+|. .++....||.|.+=.+...+.- |.
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~---kIcIvYeDGavIVGsvdGNRIw-------------gK----- 152 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT---KICIVYEDGAVIVGSVDGNRIW-------------GK----- 152 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc---EEEEEEccCCEEEEeeccceec-------------ch-----
Confidence 9999998777543222 12456789999999998 7788888888887666543310 00
Q ss_pred CCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCcee-e---eeecCCCCCeeEEEEccCcc
Q 048801 386 NNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHE-L---DVLSGHENDVNYVQFSGCAV 461 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~-l---~~l~gH~~~V~sLafspdg~ 461 (1715)
.........+.|++|...++.+-.+|.+.+||....-. .... ..+ + ..+......|..+.|....
T Consensus 153 --------eLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~-~Kl~-~~c~Vn~tg~~s~~~~kia~i~w~~g~- 221 (1189)
T KOG2041|consen 153 --------ELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFE-RKLE-KDCEVNGTGIFSNFPTKIAEIEWNTGP- 221 (1189)
T ss_pred --------hcchheccceeecccHHHHHhhhcCCcEEEecccccHH-Hhhh-hceEEeeeeeecCCCccccceeeccCc-
Confidence 01122345788999999988888999999999854211 0000 000 0 0111111234444444321
Q ss_pred cccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccc
Q 048801 462 ASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRL 541 (1715)
Q Consensus 462 as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l 541 (1715)
......+...|+.+-..|.+.|..-.+.. ...+
T Consensus 222 -----------------~~~v~pdrP~lavcy~nGr~QiMR~eND~------------------------------~Pvv 254 (1189)
T KOG2041|consen 222 -----------------YQPVPPDRPRLAVCYANGRMQIMRSENDP------------------------------EPVV 254 (1189)
T ss_pred -----------------cccCCCCCCEEEEEEcCceehhhhhcCCC------------------------------CCeE
Confidence 00111123689999999998886332210 1112
Q ss_pred cCCCCCeeEEEeCCCCCEEEEEecCC---------eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 048801 542 LPTPRGVNMIVWSLDNRFVLAAIMDC---------RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRT 612 (1715)
Q Consensus 542 ~~h~~~VtslafSPDG~~LaTgs~DG---------tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI 612 (1715)
....-.|..+.|+++|..|++++.+. .|.+|. .-|..+.+++.....|++++|-. .+-.++. ..|+.|
T Consensus 255 ~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg-~gLriA~-Avdsfi 331 (1189)
T KOG2041|consen 255 VDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEG-TGLRIAI-AVDSFI 331 (1189)
T ss_pred EecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcC-CceEEEE-EecceE
Confidence 22335678899999999999988653 455555 45888889998889999999965 4433333 458888
Q ss_pred EEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccccc---cceeecCCCccEEEcCCCCe
Q 048801 613 IVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAK---YDQFFLGDYRPLIRDSLGNV 689 (1715)
Q Consensus 613 ~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~~~---~~~~fs~D~r~L~~d~~g~v 689 (1715)
.+=+++..-.-..+ ...|.-+---++. ..-.|.+||+.+.+..-... ....|..+.-.|+...+.++
T Consensus 332 yfanIRP~ykWgy~---e~TvVy~y~~~e~-------p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~ 401 (1189)
T KOG2041|consen 332 YFANIRPEYKWGYI---EETVVYVYQKEEL-------PQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGV 401 (1189)
T ss_pred EEEeecccceEEEe---eeEEEEEEccCCC-------cceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCC
Confidence 88776432111111 0111110000110 12368899998876542222 22356677777777666666
Q ss_pred eecccccccCcCCCCCcccCCCCCCCCCccchhhh
Q 048801 690 LDQETQLVPHRRNIQDPLCDSSMIPYEEPYQSMYQ 724 (1715)
Q Consensus 690 ld~~tq~~p~~~~~~~~lvD~~~~p~p~~~q~~~q 724 (1715)
+.+...+-...+.+.-.||.+-|.+....|....|
T Consensus 402 i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP 436 (1189)
T KOG2041|consen 402 IPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRP 436 (1189)
T ss_pred CcchhhhhcccceEEEeeecccCCcCCCCcceeee
Confidence 66555555555555667888888887777766543
No 247
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=4.7e-09 Score=132.16 Aligned_cols=235 Identities=14% Similarity=0.049 Sum_probs=148.4
Q ss_pred CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec---CCCcEEEEecCCCCCcceecCCCCCCCccCccCC
Q 048801 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS---DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNV 383 (1715)
Q Consensus 307 GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS---~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~ 383 (1715)
..|.+||.. |.....+..|...+.+.+|+|++. .|+..+ .+..|.+||+.+++... +.
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~---~lay~s~~~g~~~i~~~dl~~g~~~~-l~-------------- 242 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQ---EITYMSYANGRPRVYLLDLETGQREL-VG-------------- 242 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCC---EEEEEEecCCCCEEEEEECCCCcEEE-ee--------------
Confidence 378889974 555667777888999999999998 455443 35789999998775321 10
Q ss_pred CCCCCCCCCCCCCCcceeEEEEccCCCeEE-EecCCCe--EEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCc
Q 048801 384 PSNNGPSSSNGLQSHQILCCAYNANGTVFV-TGSSDTF--ARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 384 ~~~~~~~~~~~~h~~~VtslafSpdG~~La-tGs~DG~--IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg 460 (1715)
.....+.+.+|+|||+.|+ +.+.++. |++||+.++. ...+..+........|+|++
T Consensus 243 -----------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~----------~~~Lt~~~~~~~~~~~spDG 301 (435)
T PRK05137 243 -----------NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT----------TTRLTDSPAIDTSPSYSPDG 301 (435)
T ss_pred -----------cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc----------eEEccCCCCccCceeEcCCC
Confidence 0122356789999998775 4444554 7777886543 23345555566778999987
Q ss_pred ccccccccccccccccccccCCcccCceEEEEc-CCC--eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCC
Q 048801 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-RDG--SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP 537 (1715)
Q Consensus 461 ~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-~DG--sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 537 (1715)
..|+..+ .+| .|.+||+.++.
T Consensus 302 --------------------------~~i~f~s~~~g~~~Iy~~d~~g~~------------------------------ 325 (435)
T PRK05137 302 --------------------------SQIVFESDRSGSPQLYVMNADGSN------------------------------ 325 (435)
T ss_pred --------------------------CEEEEEECCCCCCeEEEEECCCCC------------------------------
Confidence 4555444 444 56666765422
Q ss_pred cccccCCCCCeeEEEeCCCCCEEEEEecC---CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCC-----
Q 048801 538 RQRLLPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYD----- 609 (1715)
Q Consensus 538 ~~~l~~h~~~VtslafSPDG~~LaTgs~D---GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~D----- 609 (1715)
...+......+....|+|||++|+....+ ..|.+|++..+. ...+.. ...+..+.|+|++..+++++...
T Consensus 326 ~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~ 403 (435)
T PRK05137 326 PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGA 403 (435)
T ss_pred eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCc
Confidence 11122223345668899999999887653 368899986554 333432 23467889999554444444333
Q ss_pred CcEEEEECCCCceEEEEEcccceEEEEEEcCC
Q 048801 610 GRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPD 641 (1715)
Q Consensus 610 GtI~VWDl~tgk~l~tl~~h~~~V~svafSPD 641 (1715)
..|.++|+..+.. ..+. ..+.+...+|+|-
T Consensus 404 ~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 404 PKLYTVDLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred ceEEEEECCCCce-EEcc-CCCCccCcccCCC
Confidence 2577888765544 4444 2344666777763
No 248
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.16 E-value=1.6e-08 Score=124.94 Aligned_cols=310 Identities=12% Similarity=0.044 Sum_probs=188.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEE
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIA 334 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLa 334 (1715)
+..|++++.+|.|..+|..+|+.+-...-.......++. ++..++.++.+|.|..+|..+|+.+...... +.+.+..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCC
Confidence 568888889999999999999988776544332223333 4678888889999999999999988766532 2222211
Q ss_pred ecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEE
Q 048801 335 FSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVT 414 (1715)
Q Consensus 335 fSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~Lat 414 (1715)
...+ . .++.++.+|.|..||..+|+.+.......+.... ... .+..+. + ..+++
T Consensus 142 ~v~~-~---~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~----------------~~~----~sp~~~-~-~~v~~ 195 (377)
T TIGR03300 142 LVAN-G---LVVVRTNDGRLTALDAATGERLWTYSRVTPALTL----------------RGS----ASPVIA-D-GGVLV 195 (377)
T ss_pred EEEC-C---EEEEECCCCeEEEEEcCCCceeeEEccCCCceee----------------cCC----CCCEEE-C-CEEEE
Confidence 1112 2 5777788999999999999876654332111000 000 011111 2 36677
Q ss_pred ecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcC
Q 048801 415 GSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR 494 (1715)
Q Consensus 415 Gs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~ 494 (1715)
+..+|.+..+|..+++...... .....+.. .+..+... ........+.++.++.
T Consensus 196 ~~~~g~v~ald~~tG~~~W~~~----~~~~~g~~-~~~~~~~~---------------------~~~p~~~~~~vy~~~~ 249 (377)
T TIGR03300 196 GFAGGKLVALDLQTGQPLWEQR----VALPKGRT-ELERLVDV---------------------DGDPVVDGGQVYAVSY 249 (377)
T ss_pred ECCCCEEEEEEccCCCEeeeec----cccCCCCC-chhhhhcc---------------------CCccEEECCEEEEEEc
Confidence 7788999999988764311100 00000000 00000000 0000112357888889
Q ss_pred CCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEEC
Q 048801 495 DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 574 (1715)
Q Consensus 495 DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl 574 (1715)
+|.+..||..+++.. |.... ......+ .++..|++++.+|.|+.+|.
T Consensus 250 ~g~l~a~d~~tG~~~-----W~~~~--------------------------~~~~~p~--~~~~~vyv~~~~G~l~~~d~ 296 (377)
T TIGR03300 250 QGRVAALDLRSGRVL-----WKRDA--------------------------SSYQGPA--VDDNRLYVTDADGVVVALDR 296 (377)
T ss_pred CCEEEEEECCCCcEE-----Eeecc--------------------------CCccCce--EeCCEEEEECCCCeEEEEEC
Confidence 999999999876532 21110 0011111 24667888889999999999
Q ss_pred CCCceEEEEecCCC-CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEE-EEEcCCCCEEEEEeCCC
Q 048801 575 VDGSLVHSLTGHSA-SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVD-GKFSPDGTSIVLSDDVG 652 (1715)
Q Consensus 575 ~sg~~l~tL~gH~~-~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~s-vafSPDG~~LAsgs~DG 652 (1715)
.+|+.+........ ...+... .+..|++++.+|.|++||..+|+.+..+..+...+.. .++. + ..|++++.||
T Consensus 297 ~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG 371 (377)
T TIGR03300 297 RSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDG 371 (377)
T ss_pred CCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCc
Confidence 99998876632221 2222222 2346677889999999999999999998866544432 2333 3 3488899999
Q ss_pred eEEEE
Q 048801 653 QIYLL 657 (1715)
Q Consensus 653 ~I~IW 657 (1715)
.|+.|
T Consensus 372 ~l~~~ 376 (377)
T TIGR03300 372 DLYAF 376 (377)
T ss_pred eEEEe
Confidence 99876
No 249
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.15 E-value=3.5e-11 Score=122.20 Aligned_cols=88 Identities=17% Similarity=0.252 Sum_probs=80.7
Q ss_pred cccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHH
Q 048801 1628 SRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDW 1707 (1715)
Q Consensus 1628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~ 1707 (1715)
...+.+..|..+++....++|...+..||+++||++||+++.|+++++++.|+++|++||..||.+++.|...|+.|.++
T Consensus 13 ~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~~~A~~l~~~ 92 (112)
T cd05511 13 KNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSVYTKKAKEMLEL 92 (112)
T ss_pred HhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 33466677888887778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC
Q 048801 1708 FNRTLNKL 1715 (1715)
Q Consensus 1708 ~~~~i~~~ 1715 (1715)
|.+.+..+
T Consensus 93 ~~~~~~~~ 100 (112)
T cd05511 93 AEELLAER 100 (112)
T ss_pred HHHHHHHh
Confidence 99988753
No 250
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.15 E-value=6e-09 Score=133.20 Aligned_cols=150 Identities=23% Similarity=0.369 Sum_probs=125.8
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceE-EEeCCCC
Q 048801 250 IFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS-VLRGHTG 328 (1715)
Q Consensus 250 afSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~-~L~gH~~ 328 (1715)
.++++.-++++|+.-+.|.+|+...-..-..+.||.+.|.++.|+-||+++++.|.|.++++|++++.+... +..+|+.
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa 219 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA 219 (967)
T ss_pred eccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc
Confidence 356777799999999999999987333333689999999999999999999999999999999999988776 7789999
Q ss_pred CeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC
Q 048801 329 AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN 408 (1715)
Q Consensus 329 ~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd 408 (1715)
.|+.++|.|. .+++++.|.++++|+....++. .+ .......|..++..++
T Consensus 220 Rvw~~~~~~n-----~i~t~gedctcrvW~~~~~~l~-~y------------------------~~h~g~~iw~~~~~~~ 269 (967)
T KOG0974|consen 220 RVWACCFLPN-----RIITVGEDCTCRVWGVNGTQLE-VY------------------------DEHSGKGIWKIAVPIG 269 (967)
T ss_pred eeEEEEeccc-----eeEEeccceEEEEEecccceeh-hh------------------------hhhhhcceeEEEEcCC
Confidence 9999999997 6999999999999976543321 11 1112455899999999
Q ss_pred CCeEEEecCCCeEEEEeCCCC
Q 048801 409 GTVFVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 409 G~~LatGs~DG~IrVWDl~t~ 429 (1715)
...++|++.||.+++|++...
T Consensus 270 ~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 270 VIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ceEEEeeccCcchhhhhhhcc
Confidence 999999999999999998754
No 251
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.14 E-value=6e-11 Score=119.76 Aligned_cols=102 Identities=21% Similarity=0.288 Sum_probs=88.1
Q ss_pred hHHHHHHhhhHHHhhhhccccchhhhhHHHHHHh--hhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhh
Q 048801 1610 SESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAA--QKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNA 1687 (1715)
Q Consensus 1610 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na 1687 (1715)
++.|++|+..+++|... ++....|..+++.. ..++|...+..|||++||++||+++.|.++.++..|+++|++||
T Consensus 2 ~~l~~~~~~il~~l~~~---~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na 78 (108)
T cd05495 2 EELRQALMPTLEKLYKQ---DPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNA 78 (108)
T ss_pred HHHHHHHHHHHHHHHHc---CcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 45688888888888653 23444556655443 57899999999999999999999999999999999999999999
Q ss_pred hhccCCChHHHHHHHHHHHHHHHHhhc
Q 048801 1688 ESYFIKNAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1688 ~~~n~~~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
.+||.+++.|..+|+.|.+.|.+.+..
T Consensus 79 ~~yN~~~s~i~~~a~~l~~~F~~~~~~ 105 (108)
T cd05495 79 WLYNRKTSRVYKYCTKLAEVFEQEIDP 105 (108)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998875
No 252
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.13 E-value=7.6e-11 Score=120.28 Aligned_cols=102 Identities=20% Similarity=0.239 Sum_probs=87.4
Q ss_pred hHHHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhh
Q 048801 1610 SESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAES 1689 (1715)
Q Consensus 1610 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~ 1689 (1715)
+.+..++...+.++.. .+....|..+++....++|...+..|||++||++||+++.|+++++++.||++|++||.+
T Consensus 11 ~~~~~~c~~il~~l~~----~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~ 86 (115)
T cd05504 11 PLNLSALEQLLVEIVK----HKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFL 86 (115)
T ss_pred HHHHHHHHHHHHHHHh----CCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445555555555543 245566777777777899999999999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1690 YFIKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1690 ~n~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
||.+++.|..+|..|.++|.+.+.+|
T Consensus 87 yN~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 87 YNPEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988764
No 253
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.13 E-value=2.2e-09 Score=120.30 Aligned_cols=119 Identities=18% Similarity=0.367 Sum_probs=94.0
Q ss_pred CCCeeEEEeCCCCCEEEEE--ecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeC---CCcEEEEECCC
Q 048801 545 PRGVNMIVWSLDNRFVLAA--IMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGY---DGRTIVWDIWE 619 (1715)
Q Consensus 545 ~~~VtslafSPDG~~LaTg--s~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~---DGtI~VWDl~t 619 (1715)
.+.|.+++|+|+|+.+|+. ..+..|.+||+. ++.+..+. ...++.|.|+| ++++|++|+. .|.|.+||+.+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 4569999999999987654 456799999996 77777664 56678999999 6677777764 46799999999
Q ss_pred CceEEEEEcccceEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCcccccccc
Q 048801 620 GTPIRIYEIGRFKLVDGKFSPDGTSIVLSDD------VGQIYLLNTGQGESQKDAKY 670 (1715)
Q Consensus 620 gk~l~tl~~h~~~V~svafSPDG~~LAsgs~------DG~I~IWdl~tGe~~k~~~~ 670 (1715)
.+.+..+. +..++.++|||||++|+++.. |+.+.||+. +|+.+.....
T Consensus 135 ~~~i~~~~--~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~~~ 188 (194)
T PF08662_consen 135 KKKISTFE--HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKKPF 188 (194)
T ss_pred CEEeeccc--cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEecch
Confidence 99988876 335789999999999998754 788999998 5665544443
No 254
>smart00297 BROMO bromo domain.
Probab=99.12 E-value=1.1e-10 Score=117.92 Aligned_cols=103 Identities=21% Similarity=0.362 Sum_probs=90.1
Q ss_pred HHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccC
Q 048801 1613 RDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFI 1692 (1715)
Q Consensus 1613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~ 1692 (1715)
+++|...+..+.......+.+..|..+......++|...+..||++++|++||+++.|+++.++..|++.|++||.+||.
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~ 84 (107)
T smart00297 5 QKKLQSLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYNG 84 (107)
T ss_pred HHHHHHHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45555555555554445577888888887777899999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhhcC
Q 048801 1693 KNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1693 ~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
+++.+...|+.|.+.|.+.+.++
T Consensus 85 ~~s~~~~~a~~l~~~f~~~~~~~ 107 (107)
T smart00297 85 PDSEVYKDAKKLEKFFEKKLREL 107 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999988753
No 255
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.11 E-value=1.2e-10 Score=118.12 Aligned_cols=102 Identities=16% Similarity=0.199 Sum_probs=90.1
Q ss_pred CChHHHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhh---hhhhhHHHHHHHHHHHH
Q 048801 1608 IDSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVN---NYYRSLEAAKDDINVML 1684 (1715)
Q Consensus 1608 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n---~~Yr~~~~~~~d~~~~~ 1684 (1715)
+++++++++...+.++... +.+..|..+++. ..++|...+..|||++||++||++ ++|.+++++..|+++|+
T Consensus 1 ~~~~~~~~c~~il~~l~~~----~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~ 75 (109)
T cd05502 1 LSPIDQRKCERLLLELYCH----ELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMF 75 (109)
T ss_pred CCHHHHHHHHHHHHHHHhC----CCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Confidence 3567788888888777543 566677777766 789999999999999999999999 59999999999999999
Q ss_pred hhhhhccCCChHHHHHHHHHHHHHHHHhhc
Q 048801 1685 SNAESYFIKNAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1685 ~Na~~~n~~~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
+||..||.+++.|..+|+.|.++|.+.+..
T Consensus 76 ~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~ 105 (109)
T cd05502 76 KNCYKFNEEDSEVAQAGKELELFFEEQLKE 105 (109)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998875
No 256
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.11 E-value=1.2e-10 Score=116.91 Aligned_cols=100 Identities=22% Similarity=0.262 Sum_probs=88.9
Q ss_pred CChHHHHHHhhhHHHhhhhccccchhhhhHHHHHHh--hhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHh
Q 048801 1608 IDSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAA--QKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLS 1685 (1715)
Q Consensus 1608 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~ 1685 (1715)
++++.++.++..+.++.+. +....|..+++.. ..++|...+..|+|++||++||+++.|.++.++..|+++|++
T Consensus 1 ~t~~~~~~~~~ii~~l~~~----~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 76 (103)
T cd05500 1 MTKHQHKFLLSSIRSLKRL----KDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVD 76 (103)
T ss_pred CCHHHHHHHHHHHHHHHcC----CCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3567888888888888653 6666777777643 579999999999999999999999999999999999999999
Q ss_pred hhhhccCCChHHHHHHHHHHHHHHHH
Q 048801 1686 NAESYFIKNAALSAKVERLRDWFNRT 1711 (1715)
Q Consensus 1686 Na~~~n~~~~~i~~~~~~l~~~~~~~ 1711 (1715)
||..||.+++.+..+|+.|.+.|.+.
T Consensus 77 Na~~yN~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 77 NCLTFNGPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999875
No 257
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.11 E-value=9.3e-11 Score=116.20 Aligned_cols=82 Identities=16% Similarity=0.112 Sum_probs=76.4
Q ss_pred cchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHH
Q 048801 1630 KQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFN 1709 (1715)
Q Consensus 1630 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~ 1709 (1715)
++....|..+++....++|...+..|||++||++||+++.|++++++..||++|++||.+||.+++.+...|+.|.+++.
T Consensus 17 ~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~s~i~~~A~~l~~~~~ 96 (99)
T cd05508 17 QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGDHKLTQAAKAIVKICE 96 (99)
T ss_pred CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 45677788888777889999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HH
Q 048801 1710 RT 1711 (1715)
Q Consensus 1710 ~~ 1711 (1715)
+-
T Consensus 97 ~e 98 (99)
T cd05508 97 QE 98 (99)
T ss_pred hh
Confidence 64
No 258
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=1.5e-08 Score=124.91 Aligned_cols=422 Identities=9% Similarity=0.027 Sum_probs=239.4
Q ss_pred ccceeEEEEcCCCCCeEEEEEcCCC------------CEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECC---
Q 048801 231 QKMQNIKKLRGHRDAVYCAIFDRSG------------RFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSS--- 295 (1715)
Q Consensus 231 ~~~k~l~~L~GH~~~Vt~VafSpDG------------~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSp--- 295 (1715)
.+.+.++.+.-|...|+.|.|.|-. -+||++...|.|.|||...+..+..+..|..+|.+++|-+
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD 122 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence 4678889999999999999998621 2577777889999999999999889999999999999976
Q ss_pred CC-CEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCC----cceecC
Q 048801 296 NN-TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQY----SPRIYL 370 (1715)
Q Consensus 296 Dg-~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~----l~~i~~ 370 (1715)
+. .+|++-....+|.+|+..+|+.+...........|+.+.|-... .+...+..|.|.+-+.-.... ...+++
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r--h~~~l~s~g~vl~~~~l~~sep~~pgk~~qI 200 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR--HFCVLGSKGFVLSCKDLGLSEPDVPGKEFQI 200 (1062)
T ss_pred cchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc--eEEEEccCceEEEEeccCCCCCCCCceeEEE
Confidence 33 46666667789999999999998888766677788999997653 556666667777765432211 111111
Q ss_pred CCCCCCccCccCCCCCCCCCCCCCCCC---cceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCC
Q 048801 371 PKPPDAITGKSNVPSNNGPSSSNGLQS---HQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGH 447 (1715)
Q Consensus 371 ~~~~~~i~g~~~~~~~~~~~~~~~~h~---~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH 447 (1715)
..+.............+.......... -....++|+|.-+.++.......+.|+|+.-.. ++....-.
T Consensus 201 ~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~---------~l~vvpie 271 (1062)
T KOG1912|consen 201 TSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC---------CLAVVPIE 271 (1062)
T ss_pred ecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc---------eeEEEEec
Confidence 111000000000000000000000000 012346678865544444456778899986432 23333333
Q ss_pred CCCeeEEEEccCcccccc-------cccccc-----cccccc----------------cc-------cCCc-ccCceEEE
Q 048801 448 ENDVNYVQFSGCAVASRS-------AMSDAF-----KEENVP----------------KF-------KNSW-FCHDNIVT 491 (1715)
Q Consensus 448 ~~~V~sLafspdg~as~~-------~~~~~~-----~~~~~~----------------~~-------~~s~-~~~~~LaS 491 (1715)
.+.+.-+.+.|++.-... ...... .....+ .+ .... ..+..++.
T Consensus 272 r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~av 351 (1062)
T KOG1912|consen 272 RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAV 351 (1062)
T ss_pred cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhh
Confidence 344444455554310000 000000 000000 00 0000 00122222
Q ss_pred EcCCCeEEEEecCCCccCccccccccccc--ccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-----------CCC
Q 048801 492 CSRDGSAIIWIPRSRRSHGKVGRWTRAYH--LKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-----------DNR 558 (1715)
Q Consensus 492 gS~DGsIrIWDl~t~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-----------DG~ 558 (1715)
.-.+|.+.+|.+.+++.......-...+. +.....+.......-..+...-.|..+.++....| .|+
T Consensus 352 l~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n 431 (1062)
T KOG1912|consen 352 LYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGN 431 (1062)
T ss_pred hhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCC
Confidence 33456666666665443322111000000 00000000000000000111113444444443332 222
Q ss_pred -------EEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEe----------CCCcEEEEECCCCc
Q 048801 559 -------FVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG----------YDGRTIVWDIWEGT 621 (1715)
Q Consensus 559 -------~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs----------~DGtI~VWDl~tgk 621 (1715)
++|.|...|+|.|+|+.++.....+..|.+.|.++.|-- ..-+++.+ .-+.+.|-|+.+|.
T Consensus 432 ~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g--~sslvSfsys~~n~~sg~vrN~l~vtdLrtGl 509 (1062)
T KOG1912|consen 432 TPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG--NSSLVSFSYSHVNSASGGVRNDLVVTDLRTGL 509 (1062)
T ss_pred ccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc--ceeEEEeeeccccccccceeeeEEEEEccccc
Confidence 578899999999999999999999999999999999954 33344433 33567888999985
Q ss_pred eEE--EEE-cccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 622 PIR--IYE-IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 622 ~l~--tl~-~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
-.. .++ ....+|..+..|.-|+||+..-.+--+.|||+.+....
T Consensus 510 sk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~l 556 (1062)
T KOG1912|consen 510 SKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRML 556 (1062)
T ss_pred ccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHH
Confidence 432 222 23567999999999999999999999999999776544
No 259
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.09 E-value=1.2e-10 Score=119.18 Aligned_cols=99 Identities=17% Similarity=0.245 Sum_probs=83.8
Q ss_pred HHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccC
Q 048801 1613 RDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFI 1692 (1715)
Q Consensus 1613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~ 1692 (1715)
++.+...|..+.. .+....|..+++....++|...+..||||+||++||+++.|.++.++..|+++|+.||++||.
T Consensus 7 ~~~c~~il~~l~~----~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~ 82 (119)
T cd05496 7 KKQCKELVNLMWD----CEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTP 82 (119)
T ss_pred HHHHHHHHHHHHh----CCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 3334444444433 245566777777778899999999999999999999999999999999999999999999998
Q ss_pred -CChHHHHHHHHHHHHHHHHhhcC
Q 048801 1693 -KNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1693 -~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
+++.|..+|+.|+++|.+.+..|
T Consensus 83 ~~~s~i~~~a~~L~~~F~~~~~~l 106 (119)
T cd05496 83 NKRSRIYSMTLRLSALFEEHIKKI 106 (119)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999999988754
No 260
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.09 E-value=6.3e-09 Score=133.00 Aligned_cols=197 Identities=20% Similarity=0.236 Sum_probs=153.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCC----eEEEEECCCCCEEEEEeCCCeeEEEECCCCCceE
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGD----ITDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS 321 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~----VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~ 321 (1715)
|....+.-+...++.+..+..+.|||...+..+..+.+.... ..-+-++++.-++++|+.-+.|.+|+......-.
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~ 169 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI 169 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc
Confidence 333555666778889989999999999887776665533221 1223456778899999999999999987433333
Q ss_pred EEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCccee
Q 048801 322 VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQIL 401 (1715)
Q Consensus 322 ~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vt 401 (1715)
.+.||.+.|..+.|+-++. ++++.|.|.++++|++.+.+... ....+|...|+
T Consensus 170 ~l~GHeG~iF~i~~s~dg~---~i~s~SdDRsiRlW~i~s~~~~~------------------------~~~fgHsaRvw 222 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGR---YIASVSDDRSIRLWPIDSREVLG------------------------CTGFGHSARVW 222 (967)
T ss_pred eecccCCceEEEEEccCCc---EEEEEecCcceeeeecccccccC------------------------cccccccceeE
Confidence 6889999999999999998 99999999999999999876533 12345788899
Q ss_pred EEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC-CeeEEEEccCccccccccccccccccccccc
Q 048801 402 CCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN-DVNYVQFSGCAVASRSAMSDAFKEENVPKFK 480 (1715)
Q Consensus 402 slafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~-~V~sLafspdg~as~~~~~~~~~~~~~~~~~ 480 (1715)
.++|.|+ .+++++.|-++++|+... ..+..+.+|.. .|..++..+..
T Consensus 223 ~~~~~~n--~i~t~gedctcrvW~~~~----------~~l~~y~~h~g~~iw~~~~~~~~-------------------- 270 (967)
T KOG0974|consen 223 ACCFLPN--RIITVGEDCTCRVWGVNG----------TQLEVYDEHSGKGIWKIAVPIGV-------------------- 270 (967)
T ss_pred EEEeccc--eeEEeccceEEEEEeccc----------ceehhhhhhhhcceeEEEEcCCc--------------------
Confidence 9999999 899999999999997653 23446667754 67788887754
Q ss_pred CCcccCceEEEEcCCCeEEEEecCCCc
Q 048801 481 NSWFCHDNIVTCSRDGSAIIWIPRSRR 507 (1715)
Q Consensus 481 ~s~~~~~~LaSgS~DGsIrIWDl~t~~ 507 (1715)
..++|++.||.+++|++....
T Consensus 271 ------~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 271 ------IIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred ------eEEEeeccCcchhhhhhhccc
Confidence 589999999999999987643
No 261
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.08 E-value=1.9e-08 Score=125.75 Aligned_cols=233 Identities=16% Similarity=0.058 Sum_probs=146.1
Q ss_pred CcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCC---CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCc
Q 048801 265 RLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASND---FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSA 341 (1715)
Q Consensus 265 GtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~D---GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~ 341 (1715)
..|.++|... .....+..+...+.+.+|+|||++||.++.+ ..|++||+.++.... +..+.+.+.+++|+|++..
T Consensus 170 ~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 3588888754 3445566677789999999999999987654 479999998886543 3446667788999999873
Q ss_pred ceEEEEecCCC--cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-C
Q 048801 342 IYQLLSSSDDG--TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-D 418 (1715)
Q Consensus 342 ~~~LaSgS~DG--tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-D 418 (1715)
++++.+.++ .|.+||+.++.... +. .+.......+|+|+|+.|+.++. .
T Consensus 248 --l~~~~~~~~~~~i~~~d~~~~~~~~-l~-------------------------~~~~~~~~~~~s~dg~~l~~~s~~~ 299 (417)
T TIGR02800 248 --LAVSLSKDGNPDIYVMDLDGKQLTR-LT-------------------------NGPGIDTEPSWSPDGKSIAFTSDRG 299 (417)
T ss_pred --EEEEECCCCCccEEEEECCCCCEEE-CC-------------------------CCCCCCCCEEECCCCCEEEEEECCC
Confidence 334444444 58888887654221 10 01112345689999998876654 3
Q ss_pred C--eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC
Q 048801 419 T--FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG 496 (1715)
Q Consensus 419 G--~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG 496 (1715)
+ .|+++++.+++ ...+..+...+..+.|+|++ +.|+.++.++
T Consensus 300 g~~~iy~~d~~~~~----------~~~l~~~~~~~~~~~~spdg--------------------------~~i~~~~~~~ 343 (417)
T TIGR02800 300 GSPQIYMMDADGGE----------VRRLTFRGGYNASPSWSPDG--------------------------DLIAFVHREG 343 (417)
T ss_pred CCceEEEEECCCCC----------EEEeecCCCCccCeEECCCC--------------------------CEEEEEEccC
Confidence 3 57777776532 12233344566778899886 5677666665
Q ss_pred ---eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC---eEE
Q 048801 497 ---SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC---RIC 570 (1715)
Q Consensus 497 ---sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG---tI~ 570 (1715)
.|.+||+.++... .+. ........+|+|||++|+.++.++ .++
T Consensus 344 ~~~~i~~~d~~~~~~~------------------------------~l~-~~~~~~~p~~spdg~~l~~~~~~~~~~~l~ 392 (417)
T TIGR02800 344 GGFNIAVMDLDGGGER------------------------------VLT-DTGLDESPSFAPNGRMILYATTRGGRGVLG 392 (417)
T ss_pred CceEEEEEeCCCCCeE------------------------------Ecc-CCCCCCCceECCCCCEEEEEEeCCCcEEEE
Confidence 6788887652210 000 011123458999999998877654 355
Q ss_pred EEECCCCceEEEEecCCCCeEEEEE
Q 048801 571 VWNAVDGSLVHSLTGHSASSYVLDV 595 (1715)
Q Consensus 571 IWDl~sg~~l~tL~gH~~~V~sLaf 595 (1715)
+.+. +|.....+..+.+.+..++|
T Consensus 393 ~~~~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 393 LVST-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred EEEC-CCceeeECCCCCCCcCCCCC
Confidence 5553 45555555544444544444
No 262
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=7e-09 Score=120.63 Aligned_cols=259 Identities=13% Similarity=0.105 Sum_probs=185.5
Q ss_pred CCCCeEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCcEEEE------ecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 242 HRDAVYCAIFDRSGR--FVITGSDDRLVKIWSMETAFCLAS------CRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 242 H~~~Vt~VafSpDG~--~LaTGS~DGtIrIWDl~tgk~l~t------L~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
-...|+.++|.-+++ .|...+.|..+..+.+....+... +.+..+.|..++.. | ..|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-D-GTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-C-CEEEEEecCCcEEEEe
Confidence 445677778876554 455555677777777766554433 34556777777764 3 3677888899999999
Q ss_pred CCCCC----ceEEEeCCCCCeEEEEecCCCCcceEEEEecCC--CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 314 LPDGL----PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD--GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 314 l~tg~----~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D--GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
...+. ++..+..+ ..+..|.-++..+. .+++||.. ..+.|||+...+.+.+ ....+...-+
T Consensus 132 ~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~--Iva~GGke~~n~lkiwdle~~~qiw~--aKNvpnD~L~-------- 198 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY--IVATGGKENINELKIWDLEQSKQIWS--AKNVPNDRLG-------- 198 (412)
T ss_pred ccCCccccccceeeecC-CceeeeccCCCCCc--eEecCchhcccceeeeecccceeeee--ccCCCCcccc--------
Confidence 87543 34444433 45677777776663 57779988 8899999987743322 2111111100
Q ss_pred CCCCCCCCCCcceeEEEEccC--CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccc
Q 048801 388 GPSSSNGLQSHQILCCAYNAN--GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafSpd--G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~ 465 (1715)
..-.-.++++.|.+. ...||+++.-+.+++||.+.+. +++..+.--+.+|.++...|.+
T Consensus 199 ------LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR--------RPV~~fd~~E~~is~~~l~p~g----- 259 (412)
T KOG3881|consen 199 ------LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR--------RPVAQFDFLENPISSTGLTPSG----- 259 (412)
T ss_pred ------ceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC--------cceeEeccccCcceeeeecCCC-----
Confidence 111345788999887 7899999999999999998642 3455666667889999988876
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~ 545 (1715)
+.|++|..-|.+..||++++...+. .+.+-.
T Consensus 260 ---------------------n~Iy~gn~~g~l~~FD~r~~kl~g~----------------------------~~kg~t 290 (412)
T KOG3881|consen 260 ---------------------NFIYTGNTKGQLAKFDLRGGKLLGC----------------------------GLKGIT 290 (412)
T ss_pred ---------------------cEEEEecccchhheecccCceeecc----------------------------ccCCcc
Confidence 7899999999999999997653322 244557
Q ss_pred CCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEE
Q 048801 546 RGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSL 583 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL 583 (1715)
+.|++|..+|.+.+|++++-|..|+|+|+.+.++++..
T Consensus 291 Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 291 GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence 78999999999999999999999999999987666543
No 263
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.06 E-value=1.5e-07 Score=113.60 Aligned_cols=277 Identities=14% Similarity=0.131 Sum_probs=169.8
Q ss_pred CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec---------CCCcEEEEecCCCCCcceecCCCCCCCc
Q 048801 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS---------DDGTCRIWDARYSQYSPRIYLPKPPDAI 377 (1715)
Q Consensus 307 GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS---------~DGtVrIWDl~tg~~l~~i~~~~~~~~i 377 (1715)
++|.|.|..+++.+.++.....+- .+ ++|+++. ..++.+ .+..|.+||+.+.+.+..+.++..+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~--lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSF--FAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCE--EEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 899999999999988887443333 34 9999984 334444 6889999999999988877665332211
Q ss_pred cCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec-C-CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEE
Q 048801 378 TGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS-S-DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQ 455 (1715)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs-~-DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLa 455 (1715)
. ......++++|||++|.+.. . +..|.++|+.+++. +..+.-. +...-..
T Consensus 103 ~------------------~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv---------v~ei~vp-~~~~vy~ 154 (352)
T TIGR02658 103 V------------------GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF---------VRMMDVP-DCYHIFP 154 (352)
T ss_pred c------------------cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE---------EEEEeCC-CCcEEEE
Confidence 1 12245789999999888765 3 78999999988654 2221111 0111111
Q ss_pred EccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCC
Q 048801 456 FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRG 535 (1715)
Q Consensus 456 fspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g 535 (1715)
.+. ..+.+-+.||......+.+..... . .....+. .
T Consensus 155 t~e----------------------------~~~~~~~~Dg~~~~v~~d~~g~~~-~-~~~~vf~--------------~ 190 (352)
T TIGR02658 155 TAN----------------------------DTFFMHCRDGSLAKVGYGTKGNPK-I-KPTEVFH--------------P 190 (352)
T ss_pred ecC----------------------------CccEEEeecCceEEEEecCCCceE-E-eeeeeec--------------C
Confidence 111 122223344444443332211000 0 0000000 0
Q ss_pred CCcccccCCCCCeeEEEeCC-CCCEEEEEecCCeEEEEECCCC-----ceEEEEec-------CCCCeEEEEEccCCCcE
Q 048801 536 GPRQRLLPTPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAVDG-----SLVHSLTG-------HSASSYVLDVHPFNPRI 602 (1715)
Q Consensus 536 ~~~~~l~~h~~~VtslafSP-DG~~LaTgs~DGtI~IWDl~sg-----~~l~tL~g-------H~~~V~sLafSP~dg~l 602 (1715)
....+..+ + .|++ +|+++++... |.|.+.|+... .....+.. ..+.+.-++++++++++
T Consensus 191 -~~~~v~~r--P----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 191 -EDEYLINH--P----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred -CccccccC--C----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 00000011 1 3455 8888877766 99999996442 23333221 23445569999966666
Q ss_pred EEEE-e--------CCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCC-EEEEEe-CCCeEEEEECCCCcccccc
Q 048801 603 AMSA-G--------YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGT-SIVLSD-DVGQIYLLNTGQGESQKDA 668 (1715)
Q Consensus 603 LaSg-s--------~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~-~LAsgs-~DG~I~IWdl~tGe~~k~~ 668 (1715)
++.. + ..+.|.++|..+++.+..+..+ ..+..++|+|||+ +|++.. .++.|.|+|+.+++.++..
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 6633 1 1257999999999999999854 4788999999999 777665 6789999999999876543
No 264
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.05 E-value=2.8e-10 Score=113.84 Aligned_cols=98 Identities=19% Similarity=0.315 Sum_probs=86.1
Q ss_pred HHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccC
Q 048801 1613 RDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFI 1692 (1715)
Q Consensus 1613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~ 1692 (1715)
+.+|+..+.+.... .....+..|+.+.+....++|...+..||+++||++||+++.|.+++++..|+++|+.||.+||.
T Consensus 5 ~~~l~~~i~~~~d~-~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~ 83 (103)
T cd05517 5 LEQLLEAVMTATDP-SGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTFNE 83 (103)
T ss_pred HHHHHHHHHHhhCc-CCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45666666665543 45566777888887888899999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 048801 1693 KNAALSAKVERLRDWFNRT 1711 (1715)
Q Consensus 1693 ~~~~i~~~~~~l~~~~~~~ 1711 (1715)
+++.|...|+.|.++|..+
T Consensus 84 ~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05517 84 PGSQVYKDANAIKKIFTAK 102 (103)
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999764
No 265
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.03 E-value=2.6e-10 Score=114.23 Aligned_cols=95 Identities=15% Similarity=0.230 Sum_probs=80.4
Q ss_pred HHHHhhhHHHhhhhccccchhhhhHHHHHHh--hhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhc
Q 048801 1613 RDKLLSSFNKLEQSVSRKQDYYGIQRLNEAA--QKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESY 1690 (1715)
Q Consensus 1613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~ 1690 (1715)
|.+++..|.+. ...+.+..|..+++.. ..++|...+..||++++|++||+++.|++++++..|+++|++||..|
T Consensus 5 c~~Il~~l~~~----~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~y 80 (102)
T cd05499 5 CEEVLKELMKP----KHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTF 80 (102)
T ss_pred HHHHHHHHHcc----cCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 44444444442 2234556677776655 78999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHH
Q 048801 1691 FIKNAALSAKVERLRDWFNRT 1711 (1715)
Q Consensus 1691 n~~~~~i~~~~~~l~~~~~~~ 1711 (1715)
|.+++.+..+|+.|.++|.++
T Consensus 81 n~~~s~~~~~a~~l~~~fe~~ 101 (102)
T cd05499 81 NPEGTDVYMMGHQLEEVFNDK 101 (102)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999876
No 266
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.02 E-value=4.4e-10 Score=113.04 Aligned_cols=100 Identities=20% Similarity=0.235 Sum_probs=87.3
Q ss_pred HHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccC
Q 048801 1613 RDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFI 1692 (1715)
Q Consensus 1613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~ 1692 (1715)
++.|+..+.+.... ...+.+..|+.+.+....++|...+..||+++||++||+++.|.+++++..|+++|+.||.+||.
T Consensus 5 ~~~~~~~i~~~~d~-~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~yN~ 83 (105)
T cd05515 5 LWELYNAVKNYTDG-RGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKYNE 83 (105)
T ss_pred HHHHHHHHHHhhCc-CCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 55666666666543 34556677888777778899999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhh
Q 048801 1693 KNAALSAKVERLRDWFNRTLN 1713 (1715)
Q Consensus 1693 ~~~~i~~~~~~l~~~~~~~i~ 1713 (1715)
+++.|...|..|.++|.++-+
T Consensus 84 ~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 84 PDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred CCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999998753
No 267
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.02 E-value=4.1e-10 Score=114.22 Aligned_cols=99 Identities=17% Similarity=0.253 Sum_probs=85.9
Q ss_pred HHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccC
Q 048801 1613 RDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFI 1692 (1715)
Q Consensus 1613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~ 1692 (1715)
|..|...+.++.. ++.+..|..+++....++|...+..|||++||++||+++.|.++.++..|+++|++||..||.
T Consensus 5 r~~L~~il~~l~~----~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~ 80 (112)
T cd05528 5 RLFLRDVLKRLAS----DKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNP 80 (112)
T ss_pred HHHHHHHHHHHHh----CCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCC
Confidence 3444455555543 366677888888888999999999999999999999999999999999999999999999999
Q ss_pred CC----hHHHHHHHHHHHHHHHHhhcC
Q 048801 1693 KN----AALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1693 ~~----~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
++ +.|..+|..|.+.+.+.+.++
T Consensus 81 ~~s~~~s~i~~~A~~L~~~~~~~~~~~ 107 (112)
T cd05528 81 DRDPADKLIRSRACELRDEVHAMIEAE 107 (112)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHhc
Confidence 95 699999999999999998764
No 268
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.01 E-value=7.5e-07 Score=108.96 Aligned_cols=317 Identities=13% Similarity=0.124 Sum_probs=182.9
Q ss_pred EEEEeCC----CcEEEEeC--CCCcEE--EEecCCCCCeEEEEECCCCCEEEEEeC----CCeeEEEECCCC--C--ceE
Q 048801 258 VITGSDD----RLVKIWSM--ETAFCL--ASCRGHEGDITDLAVSSNNTLVASASN----DFVIRVWRLPDG--L--PIS 321 (1715)
Q Consensus 258 LaTGS~D----GtIrIWDl--~tgk~l--~tL~gHs~~VtsLafSpDg~lLASGS~----DGtIrVWDl~tg--~--~l~ 321 (1715)
++.|+.. +.|.+|.+ .++++. ..+. -......|+++|++++|+++.. ++.|..|.+... . .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4556555 68999888 455432 2222 3445667899999999999877 578999988753 2 233
Q ss_pred EEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCC-CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcce
Q 048801 322 VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYS-QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI 400 (1715)
Q Consensus 322 ~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg-~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~V 400 (1715)
...........++++|++.. ++++...+|.|.++++... ........... .+. .+ ..........
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~--l~vany~~g~v~v~~l~~~g~l~~~~~~~~~----~g~-------g~-~~~rq~~~h~ 146 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRF--LYVANYGGGSVSVFPLDDDGSLGEVVQTVRH----EGS-------GP-NPDRQEGPHP 146 (345)
T ss_dssp EEEESSSCEEEEEECTTSSE--EEEEETTTTEEEEEEECTTSEEEEEEEEEES----EEE-------ES-STTTTSSTCE
T ss_pred eeccCCCCcEEEEEecCCCE--EEEEEccCCeEEEEEccCCcccceeeeeccc----CCC-------CC-cccccccccc
Confidence 33323445678999999882 3444457999999999863 32222111000 000 00 0011123446
Q ss_pred eEEEEccCCCeEEEec-CCCeEEEEeCCCCCccCCCCCceeeeee-cCCCCCeeEEEEccCccccccccccccccccccc
Q 048801 401 LCCAYNANGTVFVTGS-SDTFARVWSACKSSVEDSEQPIHELDVL-SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPK 478 (1715)
Q Consensus 401 tslafSpdG~~LatGs-~DG~IrVWDl~t~~~~~~~~~~~~l~~l-~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~ 478 (1715)
.++.|+|+|++|++.. ....|.+|++..... .......+ ......-..++|+|++
T Consensus 147 H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~-----~l~~~~~~~~~~G~GPRh~~f~pdg------------------ 203 (345)
T PF10282_consen 147 HQVVFSPDGRFVYVPDLGADRVYVYDIDDDTG-----KLTPVDSIKVPPGSGPRHLAFSPDG------------------ 203 (345)
T ss_dssp EEEEE-TTSSEEEEEETTTTEEEEEEE-TTS------TEEEEEEEECSTTSSEEEEEE-TTS------------------
T ss_pred eeEEECCCCCEEEEEecCCCEEEEEEEeCCCc-----eEEEeeccccccCCCCcEEEEcCCc------------------
Confidence 7899999999877754 345799999875431 01111222 2334456789999986
Q ss_pred ccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC
Q 048801 479 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR 558 (1715)
Q Consensus 479 ~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~ 558 (1715)
...+++...++.|.++++..... .+.....+...+. -.........|+++|||+
T Consensus 204 -------~~~Yv~~e~s~~v~v~~~~~~~g-----~~~~~~~~~~~~~--------------~~~~~~~~~~i~ispdg~ 257 (345)
T PF10282_consen 204 -------KYAYVVNELSNTVSVFDYDPSDG-----SLTEIQTISTLPE--------------GFTGENAPAEIAISPDGR 257 (345)
T ss_dssp -------SEEEEEETTTTEEEEEEEETTTT-----EEEEEEEEESCET--------------TSCSSSSEEEEEE-TTSS
T ss_pred -------CEEEEecCCCCcEEEEeecccCC-----ceeEEEEeeeccc--------------cccccCCceeEEEecCCC
Confidence 24567778899999998872211 1111110000000 001113577899999999
Q ss_pred EEEEEe-cCCeEEEEECC--CCce--EEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC--CCCceEEEEE-ccc
Q 048801 559 FVLAAI-MDCRICVWNAV--DGSL--VHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI--WEGTPIRIYE-IGR 630 (1715)
Q Consensus 559 ~LaTgs-~DGtI~IWDl~--sg~~--l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl--~tgk~l~tl~-~h~ 630 (1715)
+|+++. ..+.|.+|++. +|++ +..+.........++++|++..++++.-.++.|.+|++ .+|.+...-. ..-
T Consensus 258 ~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~ 337 (345)
T PF10282_consen 258 FLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPI 337 (345)
T ss_dssp EEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEES
T ss_pred EEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccC
Confidence 988765 46689999983 3443 33444444557899999955555555557789999976 4666544432 122
Q ss_pred ceEEEEEE
Q 048801 631 FKLVDGKF 638 (1715)
Q Consensus 631 ~~V~svaf 638 (1715)
....|+.|
T Consensus 338 ~~p~ci~f 345 (345)
T PF10282_consen 338 PSPVCIVF 345 (345)
T ss_dssp SSEEEEEE
T ss_pred CCCEEEeC
Confidence 34556655
No 269
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=5.7e-08 Score=116.66 Aligned_cols=307 Identities=12% Similarity=0.135 Sum_probs=185.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC-----------CCeeEEEEC
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN-----------DFVIRVWRL 314 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~-----------DGtIrVWDl 314 (1715)
=+-+.|||-|.||+|--.-| |.+|--.+-..++.+. |. .|.-+.|||+.+||+|-+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 46688999999999997765 8899876666666655 54 5888999999999998643 257999999
Q ss_pred CCCCceEEEeC--CCCCe-EEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 315 PDGLPISVLRG--HTGAV-TAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 315 ~tg~~l~~L~g--H~~~V-tsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
.+|...+.+.. ....+ .-..||.+++ +++.-.. ..|.||+..+-.++...
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdK---y~Arm~~-~sisIyEtpsf~lld~K----------------------- 342 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDK---YFARMTG-NSISIYETPSFMLLDKK----------------------- 342 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCc---eeEEecc-ceEEEEecCceeeeccc-----------------------
Confidence 99998888765 22223 3357999988 6666665 45889986543221110
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecC-----CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccc
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSS-----DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSA 466 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~-----DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~ 466 (1715)
...-..|....|+|.+++||-=+. -..+.+..+.+.+ .+++..-|.-.=..+.|..+|
T Consensus 343 --slki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~---------~iRt~nlfnVsDckLhWQk~g------ 405 (698)
T KOG2314|consen 343 --SLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKR---------EIRTKNLFNVSDCKLHWQKSG------ 405 (698)
T ss_pred --ccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccc---------eeeeccceeeeccEEEeccCC------
Confidence 111234788899999887774321 1223333333221 122211111111122333322
Q ss_pred ccccccccccccccCCcccCceEEE----------EcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCC
Q 048801 467 MSDAFKEENVPKFKNSWFCHDNIVT----------CSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGG 536 (1715)
Q Consensus 467 ~~~~~~~~~~~~~~~s~~~~~~LaS----------gS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~ 536 (1715)
++|+. .+.-..+-|+.++....
T Consensus 406 --------------------dyLcvkvdR~tK~~~~g~f~n~eIfrireKdI---------------------------- 437 (698)
T KOG2314|consen 406 --------------------DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI---------------------------- 437 (698)
T ss_pred --------------------cEEEEEEEeeccccccceEeeEEEEEeeccCC----------------------------
Confidence 22221 11111233443332110
Q ss_pred CcccccCCCCCeeEEEeCCCCCEEEEEecC---CeEEEEECCC----CceEEEEecCCCCeEEEEEccCCCcEEEEE---
Q 048801 537 PRQRLLPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAVD----GSLVHSLTGHSASSYVLDVHPFNPRIAMSA--- 606 (1715)
Q Consensus 537 ~~~~l~~h~~~VtslafSPDG~~LaTgs~D---GtI~IWDl~s----g~~l~tL~gH~~~V~sLafSP~dg~lLaSg--- 606 (1715)
+ .........|...+|-|.|..+++-+.+ .+|.+|.+.+ ..++..|.. ...+.|.|+| .|++++.+
T Consensus 438 p-ve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsP-kG~fvvva~l~ 513 (698)
T KOG2314|consen 438 P-VEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSP-KGRFVVVAALV 513 (698)
T ss_pred C-ceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcC-CCcEEEEEEec
Confidence 0 0112234568889999999988775543 4688887763 233444433 3457899999 55555544
Q ss_pred eCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCC
Q 048801 607 GYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDV 651 (1715)
Q Consensus 607 s~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~D 651 (1715)
|..|.+.++|..-..+..+-...+...+.+.|.|.|+|+++++..
T Consensus 514 s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 514 SRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred ccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeeh
Confidence 457899999987433333333345567889999999999998753
No 270
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.00 E-value=9.6e-08 Score=114.30 Aligned_cols=302 Identities=16% Similarity=0.205 Sum_probs=200.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC---------------cEEEEeCCCCcEEEEecCCCCC--eE-EEEECCCCCEEEEEeC
Q 048801 244 DAVYCAIFDRSGRFVITGSDDR---------------LVKIWSMETAFCLASCRGHEGD--IT-DLAVSSNNTLVASASN 305 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DG---------------tIrIWDl~tgk~l~tL~gHs~~--Vt-sLafSpDg~lLASGS~ 305 (1715)
..|.-+.|+|.++||.|-+..+ .+.|||..+|..+..+.+...+ .+ -+.|+.+.+++|-. .
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence 4588999999999999876544 4999999999999999876665 55 67899998887765 3
Q ss_pred CCeeEEEECCCCC----ceEEEeCCCCCeEEEEecCCCCcceEEEE-----ecCCCcEEEEecCCCCCcceecCCCCCCC
Q 048801 306 DFVIRVWRLPDGL----PISVLRGHTGAVTAIAFSPRPSAIYQLLS-----SSDDGTCRIWDARYSQYSPRIYLPKPPDA 376 (1715)
Q Consensus 306 DGtIrVWDl~tg~----~l~~L~gH~~~VtsLafSPdg~~~~~LaS-----gS~DGtVrIWDl~tg~~l~~i~~~~~~~~ 376 (1715)
...++|+++ ++. +.+.++ ...|....|+|.+... .|+. .+.++.+++|.+..+..+.+..+...
T Consensus 151 ~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~-~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~--- 223 (561)
T COG5354 151 GSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHD-ELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV--- 223 (561)
T ss_pred cCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCc-eEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee---
Confidence 347999997 332 122222 3568888999985443 2332 46788999999876554443322111
Q ss_pred ccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec-----------CCCeEEEEeCCCCCccCCCCCceeeeeec
Q 048801 377 ITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS-----------SDTFARVWSACKSSVEDSEQPIHELDVLS 445 (1715)
Q Consensus 377 i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs-----------~DG~IrVWDl~t~~~~~~~~~~~~l~~l~ 445 (1715)
.-..+.|.+.|.+|++-. ....++|+++.... +....
T Consensus 224 ----------------------~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~----------i~V~~ 271 (561)
T COG5354 224 ----------------------SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS----------IPVEK 271 (561)
T ss_pred ----------------------cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc----------cceec
Confidence 123567777777655321 13567788776322 22333
Q ss_pred CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCC
Q 048801 446 GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPP 525 (1715)
Q Consensus 446 gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~ 525 (1715)
...++|...+|.|.+. .--+++|-.+..+.++|++..-
T Consensus 272 ~~~~pVhdf~W~p~S~------------------------~F~vi~g~~pa~~s~~~lr~Nl------------------ 309 (561)
T COG5354 272 DLKDPVHDFTWEPLSS------------------------RFAVISGYMPASVSVFDLRGNL------------------ 309 (561)
T ss_pred cccccceeeeecccCC------------------------ceeEEecccccceeecccccce------------------
Confidence 5578999999999761 1234555688889999887521
Q ss_pred CCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC---CeEEEEECCCCceEE-EEecCCCCeEEEEEccCCCc
Q 048801 526 PPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAVDGSLVH-SLTGHSASSYVLDVHPFNPR 601 (1715)
Q Consensus 526 ~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D---GtI~IWDl~sg~~l~-tL~gH~~~V~sLafSP~dg~ 601 (1715)
........=+.+.|||.++++++++.| |.|-+|+......+. .+.+... .-+.|+| ++.
T Consensus 310 --------------~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~--s~~~wsp-d~q 372 (561)
T COG5354 310 --------------RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT--SYCDWSP-DGQ 372 (561)
T ss_pred --------------EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCc--eEeeccC-Cce
Confidence 111122334567899999999998766 579999987655444 5554433 4568999 555
Q ss_pred EEEEEe------CCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCC
Q 048801 602 IAMSAG------YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVG 652 (1715)
Q Consensus 602 lLaSgs------~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG 652 (1715)
++.+.. .|..|.|||+.... + ...+.+.|.|.|++..+.+.++
T Consensus 373 F~~~~~ts~k~~~Dn~i~l~~v~g~~-~-------fel~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 373 FYDTDTTSEKLRVDNSIKLWDVYGAK-V-------FELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred EEEecCCCcccccCcceEEEEecCch-h-------hhhhhccccCCcccceeeccCC
Confidence 555442 47889999984332 2 1566788999888776665543
No 271
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.00 E-value=1.7e-06 Score=102.51 Aligned_cols=141 Identities=18% Similarity=0.129 Sum_probs=113.8
Q ss_pred cCCCCCeeEEEeCCCCCEEEEEecCC-eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC
Q 048801 542 LPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG 620 (1715)
Q Consensus 542 ~~h~~~VtslafSPDG~~LaTgs~DG-tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg 620 (1715)
.++.+.|.-..+..++.-++.|..|| .|-|+|..+++ +..+...-+.|.++..++ ++..++.+.....|.+.|+.+|
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididng 433 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNG 433 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCC
Confidence 34666788888988888999999999 89999987765 455666778899999999 7788888888889999999999
Q ss_pred ceEEEEEcccceEEEEEEcCCCCEEEEEeCCC----eEEEEECCCCcccc-----ccccceeecCCCccEEEc
Q 048801 621 TPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVG----QIYLLNTGQGESQK-----DAKYDQFFLGDYRPLIRD 684 (1715)
Q Consensus 621 k~l~tl~~h~~~V~svafSPDG~~LAsgs~DG----~I~IWdl~tGe~~k-----~~~~~~~fs~D~r~L~~d 684 (1715)
+....-+...+-|+.++|||++++||-+--+| .|+++|+..++... ..-+..+|-||++.|.+-
T Consensus 434 nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 434 NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEE
Confidence 87665555567799999999999999876655 78999999887653 223556788898888643
No 272
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.00 E-value=4.3e-10 Score=111.26 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=75.8
Q ss_pred chhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHH
Q 048801 1631 QDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNR 1710 (1715)
Q Consensus 1631 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~ 1710 (1715)
+....|..+++....++|...+..|||++||++||+++.|.++.++..|+++|++||.+||.+++.|...|.+|++.|.+
T Consensus 16 ~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~le~~f~~ 95 (97)
T cd05505 16 RFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSYVLSCMRKTEQCCVN 95 (97)
T ss_pred CCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 45566777777777899999999999999999999999999999999999999999999999999999999999999987
Q ss_pred Hh
Q 048801 1711 TL 1712 (1715)
Q Consensus 1711 ~i 1712 (1715)
.|
T Consensus 96 ~~ 97 (97)
T cd05505 96 LL 97 (97)
T ss_pred hC
Confidence 64
No 273
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=1e-07 Score=115.48 Aligned_cols=301 Identities=15% Similarity=0.184 Sum_probs=190.0
Q ss_pred CeEEEEEcCCCCEEEEE-----eC-----CCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEEC
Q 048801 245 AVYCAIFDRSGRFVITG-----SD-----DRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRL 314 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTG-----S~-----DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl 314 (1715)
.++++.|+|-|.+|.|- .. ...+++|+++++.....+......-+++.|+.|..+.|-- ..+.|.+|++
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~ 153 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDL 153 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhh-hcceEEEEec
Confidence 78999999999998863 11 2357899999965555444322222689999987654432 3468999998
Q ss_pred CCCCceEEEeCCCCCeEEEEecCCCCcceEEE-----EecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCC
Q 048801 315 PDGLPISVLRGHTGAVTAIAFSPRPSAIYQLL-----SSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGP 389 (1715)
Q Consensus 315 ~tg~~l~~L~gH~~~VtsLafSPdg~~~~~La-----SgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~ 389 (1715)
.+.+.+.. .-|...|+.+.++|.+... .++ ..|.-+.|+||.+.-......+.
T Consensus 154 ~~f~~~~~-kl~~~~i~~f~lSpgp~~~-~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a-------------------- 211 (566)
T KOG2315|consen 154 GSFKTIQH-KLSVSGITMLSLSPGPEPP-FVAVYVPEKKGAPASVRIYKYPEEGQHQPVA-------------------- 211 (566)
T ss_pred CCccceee-eeeccceeeEEecCCCCCc-eEEEEccCCCCCCcEEEEeccccccccchhh--------------------
Confidence 76433222 2367789999999974432 333 24566789999775222111110
Q ss_pred CCCCCCCCcceeEEEEccCCC-eEEEecC-----------CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEc
Q 048801 390 SSSNGLQSHQILCCAYNANGT-VFVTGSS-----------DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS 457 (1715)
Q Consensus 390 ~~~~~~h~~~VtslafSpdG~-~LatGs~-----------DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafs 457 (1715)
........=..+.|++-|. +|+.++. ...++++++... ....--...++|.++.|+
T Consensus 212 --~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~----------s~~V~L~k~GPVhdv~W~ 279 (566)
T KOG2315|consen 212 --NKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE----------SVSVPLLKEGPVHDVTWS 279 (566)
T ss_pred --hccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc----------eEEEecCCCCCceEEEEC
Confidence 0011111223566777664 3332221 235666666521 122222347899999999
Q ss_pred cCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCC
Q 048801 458 GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP 537 (1715)
Q Consensus 458 pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 537 (1715)
+++. .-.++.|-.-..+.|||++..-
T Consensus 280 ~s~~------------------------EF~VvyGfMPAkvtifnlr~~~------------------------------ 305 (566)
T KOG2315|consen 280 PSGR------------------------EFAVVYGFMPAKVTIFNLRGKP------------------------------ 305 (566)
T ss_pred CCCC------------------------EEEEEEecccceEEEEcCCCCE------------------------------
Confidence 9871 1234556677788999887311
Q ss_pred cccccCCCCCeeEEEeCCCCCEEEEEecC---CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEe------C
Q 048801 538 RQRLLPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG------Y 608 (1715)
Q Consensus 538 ~~~l~~h~~~VtslafSPDG~~LaTgs~D---GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs------~ 608 (1715)
.+.-..++-+++-|+|.|++|+.++-+ |.|-|||+.+.+++..+..... +-+.|+| ||.+++|+. .
T Consensus 306 --v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~P-dGe~flTATTaPRlrv 380 (566)
T KOG2315|consen 306 --VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSP-DGEYFLTATTAPRLRV 380 (566)
T ss_pred --eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcC-CCcEEEEEeccccEEe
Confidence 112234556789999999999988765 6899999999988888876544 4678999 666666665 3
Q ss_pred CCcEEEEECCCCceEEEEEcccceEEEEEEcCC
Q 048801 609 DGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPD 641 (1715)
Q Consensus 609 DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPD 641 (1715)
|+.++||++ +|..+....-.. ..+.+.|-|-
T Consensus 381 dNg~Kiwhy-tG~~l~~~~f~s-EL~qv~W~P~ 411 (566)
T KOG2315|consen 381 DNGIKIWHY-TGSLLHEKMFKS-ELLQVEWRPF 411 (566)
T ss_pred cCCeEEEEe-cCceeehhhhhH-hHhheeeeec
Confidence 788999997 777765443211 4566666653
No 274
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.00 E-value=5.8e-10 Score=113.10 Aligned_cols=85 Identities=16% Similarity=0.177 Sum_probs=76.5
Q ss_pred chhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCCh-HHHHHHHHHHHHHH
Q 048801 1631 QDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNA-ALSAKVERLRDWFN 1709 (1715)
Q Consensus 1631 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~-~i~~~~~~l~~~~~ 1709 (1715)
+....|..+++....++|...+..|||++||++||+++.|.++++++.|+++|++||..||.+.+ .+..+|+.|.+.+.
T Consensus 24 ~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~yN~~~s~~~~~~A~~l~~~~~ 103 (112)
T cd05510 24 EHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYNSDPSHPLRRHANFMKKKAE 103 (112)
T ss_pred ccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 44566777777778899999999999999999999999999999999999999999999999765 67889999999999
Q ss_pred HHhhcC
Q 048801 1710 RTLNKL 1715 (1715)
Q Consensus 1710 ~~i~~~ 1715 (1715)
..+..|
T Consensus 104 ~~~~~~ 109 (112)
T cd05510 104 HLLKLI 109 (112)
T ss_pred HHHHHC
Confidence 888764
No 275
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.98 E-value=6.7e-10 Score=111.15 Aligned_cols=96 Identities=22% Similarity=0.357 Sum_probs=81.9
Q ss_pred HHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCC
Q 048801 1615 KLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKN 1694 (1715)
Q Consensus 1615 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~ 1694 (1715)
.|+..+...... ...+.+..|..+......++|...+..||+++||++||+++.|+++.++..|+++|++||.+||.++
T Consensus 7 ~l~~~i~~~~~~-~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~ 85 (103)
T cd05520 7 QLYDTIRNARNN-QGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPN 85 (103)
T ss_pred HHHHHHHhhcCC-CCCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 344444444322 2345566788887778889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHH
Q 048801 1695 AALSAKVERLRDWFNRT 1711 (1715)
Q Consensus 1695 ~~i~~~~~~l~~~~~~~ 1711 (1715)
+.+..+|+.|.++|..+
T Consensus 86 s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 86 SRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999865
No 276
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.98 E-value=8.5e-10 Score=111.32 Aligned_cols=102 Identities=21% Similarity=0.285 Sum_probs=85.2
Q ss_pred HHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccC
Q 048801 1613 RDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFI 1692 (1715)
Q Consensus 1613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~ 1692 (1715)
.++|+..+.+.... .....+..|..+......++|...+..||+++||++||+++.|.++.++..|+++|++||.+||.
T Consensus 6 ~~~il~~v~~~~d~-~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (107)
T cd05516 6 MNKIVDVVIKYKDS-DGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQTFNL 84 (107)
T ss_pred HHHHHHHHHhhhCc-CCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34455555554322 23334566777777778899999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhhcC
Q 048801 1693 KNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1693 ~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
+++.|..+|..|.++|.+..+++
T Consensus 85 ~~s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 85 EGSLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999887654
No 277
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=9.1e-08 Score=120.42 Aligned_cols=234 Identities=15% Similarity=0.053 Sum_probs=144.3
Q ss_pred cEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCC---CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcc
Q 048801 266 LVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASND---FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAI 342 (1715)
Q Consensus 266 tIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~D---GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~ 342 (1715)
.|.++|.+.+. .+.+..+...+...+|+|||+.|+..+.+ ..|.+|++.++.... +....+.+...+|+|++..
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~- 256 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSK- 256 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCE-
Confidence 47778877554 45555677889999999999999877643 368999998886543 3334455667999999983
Q ss_pred eEEEEecCCC--cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-CC
Q 048801 343 YQLLSSSDDG--TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-DT 419 (1715)
Q Consensus 343 ~~LaSgS~DG--tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-DG 419 (1715)
++++...+| .|.+||+.++.... +. .+........|+|||+.|+..+. +|
T Consensus 257 -la~~~~~~g~~~Iy~~d~~~~~~~~-lt-------------------------~~~~~~~~~~~spDg~~i~f~s~~~g 309 (430)
T PRK00178 257 -LAFVLSKDGNPEIYVMDLASRQLSR-VT-------------------------NHPAIDTEPFWGKDGRTLYFTSDRGG 309 (430)
T ss_pred -EEEEEccCCCceEEEEECCCCCeEE-cc-------------------------cCCCCcCCeEECCCCCEEEEEECCCC
Confidence 233454455 57888887765321 11 01122456789999998776553 33
Q ss_pred --eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcC-CC
Q 048801 420 --FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR-DG 496 (1715)
Q Consensus 420 --~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~-DG 496 (1715)
.|+++++.+++. ..+. ..+ .......|+|++ +.|+..+. ++
T Consensus 310 ~~~iy~~d~~~g~~-------~~lt-~~~--~~~~~~~~Spdg--------------------------~~i~~~~~~~~ 353 (430)
T PRK00178 310 KPQIYKVNVNGGRA-------ERVT-FVG--NYNARPRLSADG--------------------------KTLVMVHRQDG 353 (430)
T ss_pred CceEEEEECCCCCE-------EEee-cCC--CCccceEECCCC--------------------------CEEEEEEccCC
Confidence 567777765432 1111 111 223356788876 45554443 33
Q ss_pred --eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC---CeEEE
Q 048801 497 --SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD---CRICV 571 (1715)
Q Consensus 497 --sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D---GtI~I 571 (1715)
.|.+||+.++... .+. .........|+|||++|+..+.+ ..|++
T Consensus 354 ~~~l~~~dl~tg~~~------------------------------~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~ 402 (430)
T PRK00178 354 NFHVAAQDLQRGSVR------------------------------ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLML 402 (430)
T ss_pred ceEEEEEECCCCCEE------------------------------Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence 4777887754310 000 00111235899999999877654 35777
Q ss_pred EECCCCceEEEEecCCCCeEEEEEcc
Q 048801 572 WNAVDGSLVHSLTGHSASSYVLDVHP 597 (1715)
Q Consensus 572 WDl~sg~~l~tL~gH~~~V~sLafSP 597 (1715)
+++ +|.....+..+.+.+...+|+|
T Consensus 403 ~~~-~g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 403 VSI-NGRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred EEC-CCCceEECcCCCCCcCCCccCC
Confidence 777 4555556665666777788877
No 278
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.98 E-value=5.5e-10 Score=110.82 Aligned_cols=81 Identities=17% Similarity=0.336 Sum_probs=73.9
Q ss_pred chhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHH
Q 048801 1631 QDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNR 1710 (1715)
Q Consensus 1631 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~ 1710 (1715)
+....|+.+++....++|...+..|||++||++||++..|+++.++..|+++|++||..||.+++.|.+.|+.|.+.|.+
T Consensus 16 ~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~ 95 (97)
T cd05503 16 EDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSEVGRAGHNMRKFFEK 95 (97)
T ss_pred CCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 45556777776667899999999999999999999999999999999999999999999999999999999999999976
Q ss_pred H
Q 048801 1711 T 1711 (1715)
Q Consensus 1711 ~ 1711 (1715)
.
T Consensus 96 ~ 96 (97)
T cd05503 96 R 96 (97)
T ss_pred h
Confidence 3
No 279
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=1.6e-07 Score=117.86 Aligned_cols=249 Identities=14% Similarity=0.084 Sum_probs=146.4
Q ss_pred CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCC--cEEEEecCCCCCcceecCCCCCCCccCccCCC
Q 048801 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG--TCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384 (1715)
Q Consensus 307 GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DG--tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~ 384 (1715)
..|.+.|.+.+. .+.+......+.+-+|+|++....++++...+| .|.+.++.+++.......
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~-------------- 229 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL-------------- 229 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC--------------
Confidence 357777765444 445655666778889999987432333444444 577778876653221111
Q ss_pred CCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-----CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccC
Q 048801 385 SNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-----DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGC 459 (1715)
Q Consensus 385 ~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-----DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspd 459 (1715)
.......+|+|||+.|+..+. +..+.+|++..+.. .........+.......+|+|+
T Consensus 230 ------------~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~------g~~~~lt~~~~~~~~~p~wSPD 291 (428)
T PRK01029 230 ------------QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI------GKPRRLLNEAFGTQGNPSFSPD 291 (428)
T ss_pred ------------CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC------CcceEeecCCCCCcCCeEECCC
Confidence 112345799999988876543 22344466654211 1111222222334467899998
Q ss_pred cccccccccccccccccccccCCcccCceEEEE-cCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCc
Q 048801 460 AVASRSAMSDAFKEENVPKFKNSWFCHDNIVTC-SRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPR 538 (1715)
Q Consensus 460 g~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSg-S~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~ 538 (1715)
| ..|+.. ..+|...||.+.... .+...
T Consensus 292 G--------------------------~~Laf~s~~~g~~~ly~~~~~~--------------------------~g~~~ 319 (428)
T PRK01029 292 G--------------------------TRLVFVSNKDGRPRIYIMQIDP--------------------------EGQSP 319 (428)
T ss_pred C--------------------------CEEEEEECCCCCceEEEEECcc--------------------------cccce
Confidence 7 455544 456766666432100 00011
Q ss_pred ccccCCCCCeeEEEeCCCCCEEEEEecC---CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeC--CCcEE
Q 048801 539 QRLLPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGY--DGRTI 613 (1715)
Q Consensus 539 ~~l~~h~~~VtslafSPDG~~LaTgs~D---GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~--DGtI~ 613 (1715)
..+......+...+|||||++|+..+.+ ..|++||+.+++... +......+..+.|+|++..+++++.. ...|+
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 1222233456778999999999876653 469999998887644 43334456789999955555555543 35688
Q ss_pred EEECCCCceEEEEEcccceEEEEEEcCCC
Q 048801 614 VWDIWEGTPIRIYEIGRFKLVDGKFSPDG 642 (1715)
Q Consensus 614 VWDl~tgk~l~tl~~h~~~V~svafSPDG 642 (1715)
+||+..++...... ..+.+...+|+|-.
T Consensus 399 ~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 399 LISLITKKTRKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred EEECCCCCEEEeec-CCCcccCceecCCC
Confidence 89998777655443 45556778888854
No 280
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.96 E-value=5.3e-10 Score=110.63 Aligned_cols=80 Identities=20% Similarity=0.133 Sum_probs=71.5
Q ss_pred cchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHH
Q 048801 1630 KQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFN 1709 (1715)
Q Consensus 1630 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~ 1709 (1715)
.....-|..+++....++|...+..|||++||++||+++.|.++++++.|+++|+.||.+||.|++.+.++|+.|.+.=+
T Consensus 16 ~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~ 95 (98)
T cd05513 16 KDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPDTIYYKAAKKLLHSGM 95 (98)
T ss_pred CCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhh
Confidence 34455567777666789999999999999999999999999999999999999999999999999999999999977644
No 281
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.96 E-value=9.3e-10 Score=112.00 Aligned_cols=103 Identities=14% Similarity=0.263 Sum_probs=89.3
Q ss_pred HHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhcc
Q 048801 1612 SRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYF 1691 (1715)
Q Consensus 1612 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n 1691 (1715)
.+.+|+..+.+.... .....+.-|..+......++|...+..||+++||++||+++.|.++.++..|+++|++||.+||
T Consensus 6 ~c~~il~~l~~~~~~-~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN 84 (113)
T cd05524 6 VCQELYDTIRNYKSE-DGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAYY 84 (113)
T ss_pred HHHHHHHHHHhhccc-CCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 467777777776443 3344556677777777889999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1692 IKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1692 ~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
.+++.+...|..|.++|.+.+++|
T Consensus 85 ~~~s~~~~~A~~L~~~f~~~~~~~ 108 (113)
T cd05524 85 KPDSPEHKDACKLWELFLSARNEV 108 (113)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999887754
No 282
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=9.2e-08 Score=120.84 Aligned_cols=234 Identities=13% Similarity=0.018 Sum_probs=142.1
Q ss_pred cEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCC---CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcc
Q 048801 266 LVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASND---FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAI 342 (1715)
Q Consensus 266 tIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~D---GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~ 342 (1715)
.|.++|..... .+.+..+...+.+..|||||+.|+..+.+ ..|.+||+.+++... +....+.....+|+|+++.
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~- 275 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKK- 275 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCE-
Confidence 57777865443 35566677889999999999998876543 258899998876533 3323344557899999983
Q ss_pred eEEEEecCCCc--EEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-CC
Q 048801 343 YQLLSSSDDGT--CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-DT 419 (1715)
Q Consensus 343 ~~LaSgS~DGt--VrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-DG 419 (1715)
++++.+.+|. |.+||+.+++... +. .+.......+|+|||+.|+..+. ++
T Consensus 276 -La~~~~~~g~~~Iy~~dl~tg~~~~-lt-------------------------~~~~~~~~p~wSpDG~~I~f~s~~~g 328 (448)
T PRK04792 276 -LALVLSKDGQPEIYVVDIATKALTR-IT-------------------------RHRAIDTEPSWHPDGKSLIFTSERGG 328 (448)
T ss_pred -EEEEEeCCCCeEEEEEECCCCCeEE-Cc-------------------------cCCCCccceEECCCCCEEEEEECCCC
Confidence 3344566665 7777877654221 10 01123456789999998876553 33
Q ss_pred --eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEc-CCC
Q 048801 420 --FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-RDG 496 (1715)
Q Consensus 420 --~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-~DG 496 (1715)
.|.++++.+++. ..+..........+|+|++ +.|+..+ .++
T Consensus 329 ~~~Iy~~dl~~g~~----------~~Lt~~g~~~~~~~~SpDG--------------------------~~l~~~~~~~g 372 (448)
T PRK04792 329 KPQIYRVNLASGKV----------SRLTFEGEQNLGGSITPDG--------------------------RSMIMVNRTNG 372 (448)
T ss_pred CceEEEEECCCCCE----------EEEecCCCCCcCeeECCCC--------------------------CEEEEEEecCC
Confidence 466666655421 1111122223456888887 4554443 345
Q ss_pred e--EEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC-C--eEEE
Q 048801 497 S--AIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD-C--RICV 571 (1715)
Q Consensus 497 s--IrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D-G--tI~I 571 (1715)
. |.++|+.++... .+... .......|+|||+.|+..+.+ + .|++
T Consensus 373 ~~~I~~~dl~~g~~~------------------------------~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~ 421 (448)
T PRK04792 373 KFNIARQDLETGAMQ------------------------------VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAA 421 (448)
T ss_pred ceEEEEEECCCCCeE------------------------------EccCC-CCCCCceECCCCCEEEEEEecCCceEEEE
Confidence 4 444565543210 00000 011134799999998876644 3 3777
Q ss_pred EECCCCceEEEEecCCCCeEEEEEcc
Q 048801 572 WNAVDGSLVHSLTGHSASSYVLDVHP 597 (1715)
Q Consensus 572 WDl~sg~~l~tL~gH~~~V~sLafSP 597 (1715)
++. +|.....+..+.+.+...+|+|
T Consensus 422 ~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 422 VSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EEC-CCCceEECcCCCCCcCCCccCC
Confidence 786 6777777777777788888987
No 283
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=5.4e-08 Score=120.21 Aligned_cols=175 Identities=18% Similarity=0.201 Sum_probs=128.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCC------------CEEEEEeCCCeeEEE
Q 048801 245 AVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNN------------TLVASASNDFVIRVW 312 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg------------~lLASGS~DGtIrVW 312 (1715)
.-.++.|+|.| +||-|+. ..|.|-|..+.+.++++.-|...|+.+.|.|-. -+||++...|.|.||
T Consensus 17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 35677788887 7777765 589999999999999999999999999998721 267888889999999
Q ss_pred ECCCCCceEEEeCCCCCeEEEEecCCCCcc-eEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 313 RLPDGLPISVLRGHTGAVTAIAFSPRPSAI-YQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 313 Dl~tg~~l~~L~gH~~~VtsLafSPdg~~~-~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
|...+..+..+..|..+|..++|-+..... ..|+.-....+|.+|+..+|+.......
T Consensus 95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y--------------------- 153 (1062)
T KOG1912|consen 95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY--------------------- 153 (1062)
T ss_pred EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc---------------------
Confidence 999999888899999999999998754332 3566667778999999999886544321
Q ss_pred CCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCC
Q 048801 392 SNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE 448 (1715)
Q Consensus 392 ~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~ 448 (1715)
......|+.+.| |.+.|..-+..|.+.+-+....+ ....+++.++....|.
T Consensus 154 ----s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~s--ep~~pgk~~qI~sd~S 205 (1062)
T KOG1912|consen 154 ----SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLS--EPDVPGKEFQITSDHS 205 (1062)
T ss_pred ----CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCC--CCCCCceeEEEecCcc
Confidence 122356788888 55667766677888777664322 2223444454444443
No 284
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.95 E-value=2.7e-08 Score=111.61 Aligned_cols=148 Identities=19% Similarity=0.285 Sum_probs=105.2
Q ss_pred EEEEcCCCCEEEEEeC----------CCcEEEEeCC-CCcEEEEecC-CCCCeEEEEECCCCCEEEEE--eCCCeeEEEE
Q 048801 248 CAIFDRSGRFVITGSD----------DRLVKIWSME-TAFCLASCRG-HEGDITDLAVSSNNTLVASA--SNDFVIRVWR 313 (1715)
Q Consensus 248 ~VafSpDG~~LaTGS~----------DGtIrIWDl~-tgk~l~tL~g-Hs~~VtsLafSpDg~lLASG--S~DGtIrVWD 313 (1715)
.+.|+++|.+|+.-.. -|...||-+. .+.....+.- ..++|.+++|+|+|..+|+. ..++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 4668899987765432 2345566552 2233444432 45579999999999987654 4577999999
Q ss_pred CCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecC---CCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCC
Q 048801 314 LPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD---DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPS 390 (1715)
Q Consensus 314 l~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~---DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~ 390 (1715)
+. +..+..+. ...+..|.|+|+|+ +|++++. .|.|.+||+.+.+.+...
T Consensus 90 ~~-~~~i~~~~--~~~~n~i~wsP~G~---~l~~~g~~n~~G~l~~wd~~~~~~i~~~---------------------- 141 (194)
T PF08662_consen 90 VK-GKKIFSFG--TQPRNTISWSPDGR---FLVLAGFGNLNGDLEFWDVRKKKKISTF---------------------- 141 (194)
T ss_pred Cc-ccEeEeec--CCCceEEEECCCCC---EEEEEEccCCCcEEEEEECCCCEEeecc----------------------
Confidence 96 66666663 56788999999998 6777654 467999999866543322
Q ss_pred CCCCCCCcceeEEEEccCCCeEEEecC------CCeEEEEeCCC
Q 048801 391 SSNGLQSHQILCCAYNANGTVFVTGSS------DTFARVWSACK 428 (1715)
Q Consensus 391 ~~~~~h~~~VtslafSpdG~~LatGs~------DG~IrVWDl~t 428 (1715)
....++.++|+|+|++|++++. |..++||+...
T Consensus 142 -----~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 142 -----EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred -----ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 1223789999999999999874 67889999853
No 285
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.94 E-value=1.3e-07 Score=118.15 Aligned_cols=233 Identities=15% Similarity=0.068 Sum_probs=138.9
Q ss_pred CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecC---CCcEEEEecCCCCCcceecCCCCCCCccCccCC
Q 048801 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD---DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNV 383 (1715)
Q Consensus 307 GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~---DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~ 383 (1715)
..|.++|.. +.....+..+...+.+.+|+|+++ +|+.++. ...|++||+.++.......
T Consensus 170 ~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~---~la~~~~~~~~~~i~v~d~~~g~~~~~~~-------------- 231 (417)
T TIGR02800 170 YELQVADYD-GANPQTITRSREPILSPAWSPDGQ---KLAYVSFESGKPEIYVQDLATGQREKVAS-------------- 231 (417)
T ss_pred ceEEEEcCC-CCCCEEeecCCCceecccCCCCCC---EEEEEEcCCCCcEEEEEECCCCCEEEeec--------------
Confidence 358888875 444555666777899999999998 5554433 3579999998765321110
Q ss_pred CCCCCCCCCCCCCCcceeEEEEccCCCeEEE-ecCCC--eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCc
Q 048801 384 PSNNGPSSSNGLQSHQILCCAYNANGTVFVT-GSSDT--FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 384 ~~~~~~~~~~~~h~~~VtslafSpdG~~Lat-Gs~DG--~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg 460 (1715)
+...+.+++|+|+|+.|+. .+.++ .|++|++.++. ...+..+........|+|++
T Consensus 232 ------------~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~----------~~~l~~~~~~~~~~~~s~dg 289 (417)
T TIGR02800 232 ------------FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ----------LTRLTNGPGIDTEPSWSPDG 289 (417)
T ss_pred ------------CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC----------EEECCCCCCCCCCEEECCCC
Confidence 1123456899999987764 44444 58888887643 22233344445567888876
Q ss_pred ccccccccccccccccccccCCcccCceEEEE-cCCC--eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCC
Q 048801 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTC-SRDG--SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP 537 (1715)
Q Consensus 461 ~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSg-S~DG--sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 537 (1715)
..|+.+ ..+| .|.++++.++.
T Consensus 290 --------------------------~~l~~~s~~~g~~~iy~~d~~~~~------------------------------ 313 (417)
T TIGR02800 290 --------------------------KSIAFTSDRGGSPQIYMMDADGGE------------------------------ 313 (417)
T ss_pred --------------------------CEEEEEECCCCCceEEEEECCCCC------------------------------
Confidence 455444 3444 46666655422
Q ss_pred cccccCCCCCeeEEEeCCCCCEEEEEecCC---eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCC--cE
Q 048801 538 RQRLLPTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDG--RT 612 (1715)
Q Consensus 538 ~~~l~~h~~~VtslafSPDG~~LaTgs~DG---tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DG--tI 612 (1715)
...+..+...+..++|+|+|++|+.++.++ .|.+||+.++.. ..+... .......|+|++..++++...++ .+
T Consensus 314 ~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 314 VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVL 391 (417)
T ss_pred EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEE
Confidence 111222233456789999999999988776 899999987654 333322 22345689995555555444443 34
Q ss_pred EEEECCCCceEEEEEcccceEEEEEE
Q 048801 613 IVWDIWEGTPIRIYEIGRFKLVDGKF 638 (1715)
Q Consensus 613 ~VWDl~tgk~l~tl~~h~~~V~svaf 638 (1715)
.+.+. +|.....+..+.+.+..++|
T Consensus 392 ~~~~~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 392 GLVST-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred EEEEC-CCceeeECCCCCCCcCCCCC
Confidence 45453 45555555433334444444
No 286
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.94 E-value=2.1e-06 Score=103.80 Aligned_cols=285 Identities=12% Similarity=0.039 Sum_probs=169.5
Q ss_pred CcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC----------CCeeEEEECCCCCceEEEeCCC-------
Q 048801 265 RLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN----------DFVIRVWRLPDGLPISVLRGHT------- 327 (1715)
Q Consensus 265 GtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~----------DGtIrVWDl~tg~~l~~L~gH~------- 327 (1715)
+.|.+.|..+++.+.++.....+-. + +||||+.|+.+.. +..|.|||+.+++.+..+....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 8999999999999998875544433 4 9999998887755 7899999999999998886322
Q ss_pred CCeEEEEecCCCCcceEEEEec--CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEE
Q 048801 328 GAVTAIAFSPRPSAIYQLLSSS--DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAY 405 (1715)
Q Consensus 328 ~~VtsLafSPdg~~~~~LaSgS--~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtslaf 405 (1715)
.....++++|+++ +|+... -+..|.+.|+.+++.+..+..+....... ...-..+..
T Consensus 105 ~~~~~~~ls~dgk---~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~------------------t~e~~~~~~ 163 (352)
T TIGR02658 105 TYPWMTSLTPDNK---TLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFP------------------TANDTFFMH 163 (352)
T ss_pred CccceEEECCCCC---EEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEE------------------ecCCccEEE
Confidence 2334789999998 555443 37999999999999877765532110000 000111122
Q ss_pred ccCCCeEEEe-cCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeE-EEEccCcccccccccccccccccccccCCc
Q 048801 406 NANGTVFVTG-SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNY-VQFSGCAVASRSAMSDAFKEENVPKFKNSW 483 (1715)
Q Consensus 406 SpdG~~LatG-s~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~s-Lafspdg~as~~~~~~~~~~~~~~~~~~s~ 483 (1715)
+.||.++... ..+|...+=. ...+.+-..++.. -.|.+.
T Consensus 164 ~~Dg~~~~v~~d~~g~~~~~~---------------~~vf~~~~~~v~~rP~~~~~------------------------ 204 (352)
T TIGR02658 164 CRDGSLAKVGYGTKGNPKIKP---------------TEVFHPEDEYLINHPAYSNK------------------------ 204 (352)
T ss_pred eecCceEEEEecCCCceEEee---------------eeeecCCccccccCCceEcC------------------------
Confidence 2333322211 1122211000 0000000000000 012220
Q ss_pred ccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEE
Q 048801 484 FCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAA 563 (1715)
Q Consensus 484 ~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTg 563 (1715)
++..+..... |+|.+.|+........ ..|... .. . ...---.++++.-++++++++.+++.
T Consensus 205 -dg~~~~vs~e-G~V~~id~~~~~~~~~-~~~~~~-~~--------------~-~~~~~wrP~g~q~ia~~~dg~~lyV~ 265 (352)
T TIGR02658 205 -SGRLVWPTYT-GKIFQIDLSSGDAKFL-PAIEAF-TE--------------A-EKADGWRPGGWQQVAYHRARDRIYLL 265 (352)
T ss_pred -CCcEEEEecC-CeEEEEecCCCcceec-ceeeec-cc--------------c-ccccccCCCcceeEEEcCCCCEEEEE
Confidence 1234444444 9999999764321110 000000 00 0 00001124455559999999998885
Q ss_pred ec----------CCeEEEEECCCCceEEEEecCCCCeEEEEEccCCC-cEEEEEeCCCcEEEEECCCCceEEEE-Ecccc
Q 048801 564 IM----------DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP-RIAMSAGYDGRTIVWDIWEGTPIRIY-EIGRF 631 (1715)
Q Consensus 564 s~----------DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg-~lLaSgs~DGtI~VWDl~tgk~l~tl-~~h~~ 631 (1715)
.. .+.|.++|+.+++.+..+.. ...+..|+++|++. .++++...++.|.|.|+.+++.++.+ ..+..
T Consensus 266 ~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~vg~~ 344 (352)
T TIGR02658 266 ADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQLGRG 344 (352)
T ss_pred ecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeeccCCCC
Confidence 32 24799999999999998874 34688999999655 44445557899999999999999988 43433
No 287
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.94 E-value=1.4e-09 Score=109.11 Aligned_cols=99 Identities=16% Similarity=0.208 Sum_probs=86.0
Q ss_pred HHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhcc
Q 048801 1612 SRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYF 1691 (1715)
Q Consensus 1612 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n 1691 (1715)
.+++|+..+.++.. ......+.-|..+......++|...+..||+++||++||+++.|.++.++..|+++|++||.+||
T Consensus 4 ~~~~i~~~v~~~~~-~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn 82 (103)
T cd05519 4 AMLEIYDAVLNCED-ETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTYN 82 (103)
T ss_pred HHHHHHHHHHHhcC-cCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 35667777776653 23445566777787777889999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHH
Q 048801 1692 IKNAALSAKVERLRDWFNRT 1711 (1715)
Q Consensus 1692 ~~~~~i~~~~~~l~~~~~~~ 1711 (1715)
.+++.|..+|+.|++.|..+
T Consensus 83 ~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05519 83 QEGSIVYEDAVEMEKAFKKK 102 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999875
No 288
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=1e-07 Score=120.43 Aligned_cols=234 Identities=15% Similarity=0.074 Sum_probs=141.7
Q ss_pred eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec-CC--CcEEEEecCCCCCcceecCCCCCCCccCccCCC
Q 048801 308 VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS-DD--GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS-~D--GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~ 384 (1715)
.|.++|..... .+.+..+...+.+..|+|++. .|+..+ .+ ..|.+||+.+++.......
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~---~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-------------- 260 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGR---KLAYVSFENRKAEIFVQDIYTQVREKVTSF-------------- 260 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCC---EEEEEEecCCCcEEEEEECCCCCeEEecCC--------------
Confidence 57777864443 455666778899999999998 454433 23 3588889877653211000
Q ss_pred CCCCCCCCCCCCCcceeEEEEccCCCeEEE-ecCCCe--EEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcc
Q 048801 385 SNNGPSSSNGLQSHQILCCAYNANGTVFVT-GSSDTF--ARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAV 461 (1715)
Q Consensus 385 ~~~~~~~~~~~h~~~VtslafSpdG~~Lat-Gs~DG~--IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~ 461 (1715)
.......+|+|||+.|+. .+.+|. |++||+.+++ ...+..+.......+|+|++
T Consensus 261 ------------~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~----------~~~lt~~~~~~~~p~wSpDG- 317 (448)
T PRK04792 261 ------------PGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA----------LTRITRHRAIDTEPSWHPDG- 317 (448)
T ss_pred ------------CCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC----------eEECccCCCCccceEECCCC-
Confidence 111235799999997765 455564 7777876543 23334444556778899987
Q ss_pred cccccccccccccccccccCCcccCceE-EEEcCCCe--EEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCc
Q 048801 462 ASRSAMSDAFKEENVPKFKNSWFCHDNI-VTCSRDGS--AIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPR 538 (1715)
Q Consensus 462 as~~~~~~~~~~~~~~~~~~s~~~~~~L-aSgS~DGs--IrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~ 538 (1715)
+.| ++...+|. |.++|+.+++.
T Consensus 318 -------------------------~~I~f~s~~~g~~~Iy~~dl~~g~~------------------------------ 342 (448)
T PRK04792 318 -------------------------KSLIFTSERGGKPQIYRVNLASGKV------------------------------ 342 (448)
T ss_pred -------------------------CEEEEEECCCCCceEEEEECCCCCE------------------------------
Confidence 444 44444554 44455544321
Q ss_pred ccccCCCCCeeEEEeCCCCCEEEEEecC-C--eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCc--EE
Q 048801 539 QRLLPTPRGVNMIVWSLDNRFVLAAIMD-C--RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGR--TI 613 (1715)
Q Consensus 539 ~~l~~h~~~VtslafSPDG~~LaTgs~D-G--tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGt--I~ 613 (1715)
..+..........+|+|||++|+..+.+ + .|.++|+.+++.. .+.... ......|+|++..++++...+|. +.
T Consensus 343 ~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 343 SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLA 420 (448)
T ss_pred EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC-CCCCceECCCCCEEEEEEecCCceEEE
Confidence 0111111122346899999999876653 3 5677888887653 333221 22345899966666666655554 67
Q ss_pred EEECCCCceEEEEEcccceEEEEEEcC
Q 048801 614 VWDIWEGTPIRIYEIGRFKLVDGKFSP 640 (1715)
Q Consensus 614 VWDl~tgk~l~tl~~h~~~V~svafSP 640 (1715)
+++. +|.....+..+.+.+...+|||
T Consensus 421 ~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 421 AVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EEEC-CCCceEECcCCCCCcCCCccCC
Confidence 7776 6777777765556677788887
No 289
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.93 E-value=8.5e-10 Score=109.41 Aligned_cols=79 Identities=25% Similarity=0.341 Sum_probs=71.9
Q ss_pred cchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHH
Q 048801 1630 KQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWF 1708 (1715)
Q Consensus 1630 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~ 1708 (1715)
.+...-|..+++....++|...+..|||++||++||+++.|.+++++..||++|++||..||.+++.+.+.|..|.+.=
T Consensus 16 ~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~~~A~~l~~~~ 94 (98)
T cd05512 16 KDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKDTIFYRAAVRLRDQG 94 (98)
T ss_pred CCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhh
Confidence 4555667777777778999999999999999999999999999999999999999999999999999999999998753
No 290
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.92 E-value=1.2e-06 Score=118.53 Aligned_cols=351 Identities=15% Similarity=0.182 Sum_probs=206.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC---------------C--------CcEEEEecC----------------
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSME---------------T--------AFCLASCRG---------------- 283 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~---------------t--------gk~l~tL~g---------------- 283 (1715)
...|.|++||||+.+||....+|+|.+-+-. . |+.-..|+|
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 5689999999999999999989888876421 0 000011111
Q ss_pred --------CCCCeEEEEECCCCCEEEEEeC---C---CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec
Q 048801 284 --------HEGDITDLAVSSNNTLVASASN---D---FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS 349 (1715)
Q Consensus 284 --------Hs~~VtsLafSpDg~lLASGS~---D---GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS 349 (1715)
+...-..|+|-.||.++|+.+. . ..|+||+- .|....+-..-.+--.+++|.|.|. +|++..
T Consensus 200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~---lIA~~q 275 (928)
T PF04762_consen 200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGN---LIASSQ 275 (928)
T ss_pred ccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCC---EEEEEE
Confidence 2334567889999999998875 2 47999995 4765555444444456889999997 666654
Q ss_pred C---CCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeC
Q 048801 350 D---DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSA 426 (1715)
Q Consensus 350 ~---DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl 426 (1715)
. ...|.+|.-+ |.....+.++. ......|..++|++++..||+...|. |.+|..
T Consensus 276 ~~~~~~~VvFfErN-GLrhgeF~l~~---------------------~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~ 332 (928)
T PF04762_consen 276 RLPDRHDVVFFERN-GLRHGEFTLRF---------------------DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTR 332 (928)
T ss_pred EcCCCcEEEEEecC-CcEeeeEecCC---------------------CCCCceeeEEEECCCCCEEEEEecCC-ceEEEe
Confidence 3 3445566532 22222222211 12345689999999999999987655 999988
Q ss_pred CCCCccCCCCCceeeeeec-CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEec--
Q 048801 427 CKSSVEDSEQPIHELDVLS-GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIP-- 503 (1715)
Q Consensus 427 ~t~~~~~~~~~~~~l~~l~-gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl-- 503 (1715)
.+.. ....+.+. .....+..+.|+|.. ...|...+.+|.+..+++
T Consensus 333 ~NYH-------WYLKqei~~~~~~~~~~~~Wdpe~-------------------------p~~L~v~t~~g~~~~~~~~~ 380 (928)
T PF04762_consen 333 SNYH-------WYLKQEIRFSSSESVNFVKWDPEK-------------------------PLRLHVLTSNGQYEIYDFAW 380 (928)
T ss_pred eCCE-------EEEEEEEEccCCCCCCceEECCCC-------------------------CCEEEEEecCCcEEEEEEEE
Confidence 7532 11222222 122345558898864 245555555565544332
Q ss_pred --CCCccC-----ccc----ccc--cccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEE
Q 048801 504 --RSRRSH-----GKV----GRW--TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRIC 570 (1715)
Q Consensus 504 --~t~~~~-----~~~----~~~--~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~ 570 (1715)
..+... +.+ |.. ...+....-|+|+. ......+..|.+++|++++..+++-..||.|.
T Consensus 381 ~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs---------~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~ 451 (928)
T PF04762_consen 381 DVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMS---------SYELELPSPVNDVAFSPSNSRFAVLTSDGSLS 451 (928)
T ss_pred EEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHh---------ceEEcCCCCcEEEEEeCCCCeEEEEECCCCEE
Confidence 211100 000 000 00111111122221 12223457899999999999899999999999
Q ss_pred EEECCCCce--------EEEEe----------cCCCCeEEEEEccCCCcEEEEEeCC---CcEEEEECCCCc---eEEEE
Q 048801 571 VWNAVDGSL--------VHSLT----------GHSASSYVLDVHPFNPRIAMSAGYD---GRTIVWDIWEGT---PIRIY 626 (1715)
Q Consensus 571 IWDl~sg~~--------l~tL~----------gH~~~V~sLafSP~dg~lLaSgs~D---GtI~VWDl~tgk---~l~tl 626 (1715)
+|....... ...+. .....+..++|.. +..+++....+ +.+.++++...+ .+...
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 530 (928)
T PF04762_consen 452 IYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLN-DDTLLVLSDSDSNQSKIVLVDIDDSENSASVESS 530 (928)
T ss_pred EEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeC-CCEEEEEEecCcccceEEEEEeccCCCceeEEEE
Confidence 998543221 11111 1234567888876 44554444443 678888874432 33333
Q ss_pred EcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 627 EIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 627 ~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
....+.+..+...++...++.-..+|.|+..+....
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~ 566 (928)
T PF04762_consen 531 TEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGE 566 (928)
T ss_pred eccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCC
Confidence 334455666666666666777788999997776544
No 291
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.90 E-value=2.1e-09 Score=107.51 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=81.7
Q ss_pred HHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCC
Q 048801 1615 KLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKN 1694 (1715)
Q Consensus 1615 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~ 1694 (1715)
.|+..+.+... ....+.+.-|+.+......++|...+..||+++||+++|+++.|.++.++..|+++|+.||..||.++
T Consensus 7 ~l~~~v~~~~d-~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 85 (103)
T cd05518 7 ALFLYVLEYRE-GSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYNEEG 85 (103)
T ss_pred HHHHHHHHhhc-cCCCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 34555555432 23445566677777777889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHH
Q 048801 1695 AALSAKVERLRDWFNRT 1711 (1715)
Q Consensus 1695 ~~i~~~~~~l~~~~~~~ 1711 (1715)
+.|...|+.|+++|..+
T Consensus 86 s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 86 SQVYEDANILEKVLKEK 102 (103)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999998764
No 292
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.90 E-value=9.9e-07 Score=107.90 Aligned_cols=276 Identities=15% Similarity=0.110 Sum_probs=165.7
Q ss_pred CCeEEEEEcCCCCEEEEEeC----CCcEEEEeCCC--Cc--EEEEecCCCCCeEEEEECCCCCEEEEEeC-CCeeEEEEC
Q 048801 244 DAVYCAIFDRSGRFVITGSD----DRLVKIWSMET--AF--CLASCRGHEGDITDLAVSSNNTLVASASN-DFVIRVWRL 314 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~----DGtIrIWDl~t--gk--~l~tL~gHs~~VtsLafSpDg~lLASGS~-DGtIrVWDl 314 (1715)
..-..++++|++++|.++.. +|.|..|.+.. +. .+............++++|++++|+++.. +|+|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 34556889999999999876 57899998865 33 33334434455678999999999999875 899999999
Q ss_pred CC-CCceEE---Ee----------CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCC--CcceecCCCCCCCcc
Q 048801 315 PD-GLPISV---LR----------GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQ--YSPRIYLPKPPDAIT 378 (1715)
Q Consensus 315 ~t-g~~l~~---L~----------gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~--~l~~i~~~~~~~~i~ 378 (1715)
.. |..... +. .......++.|+|+++. .+++.-....|.+|++.... +......
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~--v~v~dlG~D~v~~~~~~~~~~~l~~~~~~-------- 186 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRF--VYVPDLGADRVYVYDIDDDTGKLTPVDSI-------- 186 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSE--EEEEETTTTEEEEEEE-TTS-TEEEEEEE--------
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCE--EEEEecCCCEEEEEEEeCCCceEEEeecc--------
Confidence 86 433322 21 12245789999999983 33444445679999987654 2111100
Q ss_pred CccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEe-cCCCeEEEEeCCCCCccCCCCCceeeeeecC-C--CCCeeEE
Q 048801 379 GKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTG-SSDTFARVWSACKSSVEDSEQPIHELDVLSG-H--ENDVNYV 454 (1715)
Q Consensus 379 g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatG-s~DG~IrVWDl~t~~~~~~~~~~~~l~~l~g-H--~~~V~sL 454 (1715)
..........++|+|+|+++.+. -.++.|.+|++..... .......+..+.. . ......|
T Consensus 187 --------------~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i 250 (345)
T PF10282_consen 187 --------------KVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG--SLTEIQTISTLPEGFTGENAPAEI 250 (345)
T ss_dssp --------------ECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT--EEEEEEEEESCETTSCSSSSEEEE
T ss_pred --------------ccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC--ceeEEEEeeeccccccccCCceeE
Confidence 01123447899999999877554 4578899999872211 0011111222211 1 1257788
Q ss_pred EEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCC
Q 048801 455 QFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534 (1715)
Q Consensus 455 afspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 534 (1715)
+++|++ ...+++....++|.+|++.... +.+
T Consensus 251 ~ispdg-------------------------~~lyvsnr~~~sI~vf~~d~~~--g~l---------------------- 281 (345)
T PF10282_consen 251 AISPDG-------------------------RFLYVSNRGSNSISVFDLDPAT--GTL---------------------- 281 (345)
T ss_dssp EE-TTS-------------------------SEEEEEECTTTEEEEEEECTTT--TTE----------------------
T ss_pred EEecCC-------------------------CEEEEEeccCCEEEEEEEecCC--Cce----------------------
Confidence 999987 2355666678899999985311 000
Q ss_pred CCCcccccCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEEC--CCCceEEEEe-cCCCCeEEEEE
Q 048801 535 GGPRQRLLPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNA--VDGSLVHSLT-GHSASSYVLDV 595 (1715)
Q Consensus 535 g~~~~~l~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl--~sg~~l~tL~-gH~~~V~sLaf 595 (1715)
..+..+.......+.++++|+|++|+++. .++.|.+|++ .+|.+...-. ..-....||.|
T Consensus 282 -~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 282 -TLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp -EEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred -EEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 00111111233478899999999999887 4568888866 5666554432 22334456655
No 293
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.90 E-value=3.7e-06 Score=113.86 Aligned_cols=349 Identities=13% Similarity=0.186 Sum_probs=205.1
Q ss_pred CeEEEEEcCCCCEEE--EEeCCC--cEEEEeCCCC---cEEEEec-----CCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 245 AVYCAIFDRSGRFVI--TGSDDR--LVKIWSMETA---FCLASCR-----GHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 245 ~Vt~VafSpDG~~La--TGS~DG--tIrIWDl~tg---k~l~tL~-----gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
.+...+|......++ ++.... .|.+...... ..+..+. ...+.|.++.+.++...|+.+..+|.|.+.
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~ 102 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILV 102 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEE
Confidence 456666766554333 332222 3444433322 2333333 345789999999999999999999999999
Q ss_pred ----ECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCC---------------
Q 048801 313 ----RLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKP--------------- 373 (1715)
Q Consensus 313 ----Dl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~--------------- 373 (1715)
+..+.. +...-.-...|.+++||||.. .|+..+.+++|.+.+- +...+....+...
T Consensus 103 ~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~E---lla~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkK 177 (928)
T PF04762_consen 103 REDPDPDEDE-IEIVGSVDSGILAASWSPDEE---LLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKK 177 (928)
T ss_pred EccCCCCCce-eEEEEEEcCcEEEEEECCCcC---EEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcc
Confidence 443332 222223457899999999998 7788887888887642 2221211111100
Q ss_pred CCCccCccCCC------CCCCC---CCCCCCCCcceeEEEEccCCCeEEEecC---C---CeEEEEeCCCCCccCCCCCc
Q 048801 374 PDAITGKSNVP------SNNGP---SSSNGLQSHQILCCAYNANGTVFVTGSS---D---TFARVWSACKSSVEDSEQPI 438 (1715)
Q Consensus 374 ~~~i~g~~~~~------~~~~~---~~~~~~h~~~VtslafSpdG~~LatGs~---D---G~IrVWDl~t~~~~~~~~~~ 438 (1715)
.....|..... ....+ ..... ....-..|+|-.||.+||+.+- . ..++||+-. |.+
T Consensus 178 eTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L------- 248 (928)
T PF04762_consen 178 ETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GEL------- 248 (928)
T ss_pred cCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceE-------
Confidence 00111110000 00000 11112 4456678999999999998874 2 478999875 322
Q ss_pred eeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcC---CCeEEEEecCCCccCcccccc
Q 048801 439 HELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR---DGSAIIWIPRSRRSHGKVGRW 515 (1715)
Q Consensus 439 ~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~---DGsIrIWDl~t~~~~~~~~~~ 515 (1715)
..+...-.+--.+++|.|.| +.|++... .-.|.+|.-. |-.++.
T Consensus 249 --~stSE~v~gLe~~l~WrPsG--------------------------~lIA~~q~~~~~~~VvFfErN-GLrhge---- 295 (928)
T PF04762_consen 249 --QSTSEPVDGLEGALSWRPSG--------------------------NLIASSQRLPDRHDVVFFERN-GLRHGE---- 295 (928)
T ss_pred --EeccccCCCccCCccCCCCC--------------------------CEEEEEEEcCCCcEEEEEecC-CcEeee----
Confidence 11111122223467888876 56666543 2345555432 211111
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCce--EEEEec-CCCCeEE
Q 048801 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL--VHSLTG-HSASSYV 592 (1715)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~--l~tL~g-H~~~V~s 592 (1715)
|.+ ........|..++|++|+..||....|. |.+|-..+..- .+.+.- ....+..
T Consensus 296 ---F~l------------------~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~ 353 (928)
T PF04762_consen 296 ---FTL------------------RFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNF 353 (928)
T ss_pred ---Eec------------------CCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCc
Confidence 111 1122345689999999999999977665 99999877542 233332 2333455
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEEC----CCCc--------eEEEEE-----------------------cccceEEEEE
Q 048801 593 LDVHPFNPRIAMSAGYDGRTIVWDI----WEGT--------PIRIYE-----------------------IGRFKLVDGK 637 (1715)
Q Consensus 593 LafSP~dg~lLaSgs~DGtI~VWDl----~tgk--------~l~tl~-----------------------~h~~~V~sva 637 (1715)
+.|+|..+..|.....+|.+..+++ ..+. .+..+. ....+|.+++
T Consensus 354 ~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~va 433 (928)
T PF04762_consen 354 VKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVA 433 (928)
T ss_pred eEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEE
Confidence 9999987777777777677655432 2111 122221 1245789999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 638 FSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 638 fSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
|++++..+|+-..||.|.+|.....
T Consensus 434 f~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 434 FSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred EeCCCCeEEEEECCCCEEEEEecCC
Confidence 9999999999999999999986543
No 294
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.89 E-value=2.8e-09 Score=107.05 Aligned_cols=98 Identities=17% Similarity=0.172 Sum_probs=82.4
Q ss_pred HHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccC
Q 048801 1613 RDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFI 1692 (1715)
Q Consensus 1613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~ 1692 (1715)
.++|+..+..+... .......-|+.+......++|...+..||+++||++||++ |.++.++..|+++|++||.+||+
T Consensus 6 ~~~l~~~i~~~~~~-~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~yN~ 82 (106)
T cd05521 6 LKPLYDGIYTLKEE-NGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARLYNT 82 (106)
T ss_pred HHHHHHHHHhhcCc-CCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHcC
Confidence 44566666666543 2333445566666666789999999999999999999999 99999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhh
Q 048801 1693 KNAALSAKVERLRDWFNRTLN 1713 (1715)
Q Consensus 1693 ~~~~i~~~~~~l~~~~~~~i~ 1713 (1715)
+++.|...|..|+++|.++|-
T Consensus 83 ~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 83 KGSVIYKYALILEKYINDVII 103 (106)
T ss_pred CCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999998873
No 295
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=2.5e-07 Score=116.50 Aligned_cols=235 Identities=12% Similarity=0.043 Sum_probs=140.8
Q ss_pred eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCC---CcEEEEecCCCCCcceecCCCCCCCccCccCCC
Q 048801 308 VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD---GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D---GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~ 384 (1715)
.|.++|.+.+. ...+..+...+...+|+|+++ .|+..+.+ ..|.+|++.+++......
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~---~la~~s~~~~~~~l~~~~l~~g~~~~l~~--------------- 240 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGK---RIAYVSFEQKRPRIFVQNLDTGRREQITN--------------- 240 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCC---EEEEEEcCCCCCEEEEEECCCCCEEEccC---------------
Confidence 47777876444 455666778899999999998 55544322 468889998765321100
Q ss_pred CCCCCCCCCCCCCcceeEEEEccCCCeEEE-ecCCC--eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcc
Q 048801 385 SNNGPSSSNGLQSHQILCCAYNANGTVFVT-GSSDT--FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAV 461 (1715)
Q Consensus 385 ~~~~~~~~~~~h~~~VtslafSpdG~~Lat-Gs~DG--~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~ 461 (1715)
....+...+|+|||+.|+. ...+| .|++||+.++. ...+..+........|+|++
T Consensus 241 -----------~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~----------~~~lt~~~~~~~~~~~spDg- 298 (430)
T PRK00178 241 -----------FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ----------LSRVTNHPAIDTEPFWGKDG- 298 (430)
T ss_pred -----------CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC----------eEEcccCCCCcCCeEECCCC-
Confidence 0112346899999998774 44444 68888887643 22334444456677899987
Q ss_pred cccccccccccccccccccCCcccCceE-EEEcCCC--eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCc
Q 048801 462 ASRSAMSDAFKEENVPKFKNSWFCHDNI-VTCSRDG--SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPR 538 (1715)
Q Consensus 462 as~~~~~~~~~~~~~~~~~~s~~~~~~L-aSgS~DG--sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~ 538 (1715)
+.| ++...+| .|.++++.+++..
T Consensus 299 -------------------------~~i~f~s~~~g~~~iy~~d~~~g~~~----------------------------- 324 (430)
T PRK00178 299 -------------------------RTLYFTSDRGGKPQIYKVNVNGGRAE----------------------------- 324 (430)
T ss_pred -------------------------CEEEEEECCCCCceEEEEECCCCCEE-----------------------------
Confidence 444 4444444 4555666543210
Q ss_pred ccccCCCCCeeEEEeCCCCCEEEEEecCC---eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCC--cEE
Q 048801 539 QRLLPTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDG--RTI 613 (1715)
Q Consensus 539 ~~l~~h~~~VtslafSPDG~~LaTgs~DG---tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DG--tI~ 613 (1715)
.+..........+|+|||++|+..+.++ .|.+||+.+++.. .+.. ........|+|++..++++...+| .|.
T Consensus 325 -~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~ 401 (430)
T PRK00178 325 -RVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLM 401 (430)
T ss_pred -EeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEE
Confidence 0000011223468999999998876532 5889999887653 3332 222235689995555555554444 466
Q ss_pred EEECCCCceEEEEEcccceEEEEEEcCC
Q 048801 614 VWDIWEGTPIRIYEIGRFKLVDGKFSPD 641 (1715)
Q Consensus 614 VWDl~tgk~l~tl~~h~~~V~svafSPD 641 (1715)
++++ .|.....+..+.+.+...+|||-
T Consensus 402 ~~~~-~g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 402 LVSI-NGRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EEEC-CCCceEECcCCCCCcCCCccCCC
Confidence 6676 45444455544556667777763
No 296
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.88 E-value=2.3e-09 Score=107.51 Aligned_cols=81 Identities=20% Similarity=0.274 Sum_probs=72.0
Q ss_pred chhhhhHHHHHHh--hhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHH
Q 048801 1631 QDYYGIQRLNEAA--QKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWF 1708 (1715)
Q Consensus 1631 ~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~ 1708 (1715)
+....|..+++.. ..++|...+..||+++||++||+++.|++++++..|+++|++||..||.+++.|..+|+.|.+.|
T Consensus 19 ~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn~~~s~i~~~a~~l~~~f 98 (102)
T cd05498 19 AYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYNPPDHPVHAMARKLQDVF 98 (102)
T ss_pred cccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 4445566655433 57899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 048801 1709 NRT 1711 (1715)
Q Consensus 1709 ~~~ 1711 (1715)
.++
T Consensus 99 e~~ 101 (102)
T cd05498 99 EDR 101 (102)
T ss_pred HHh
Confidence 764
No 297
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=5.2e-07 Score=113.35 Aligned_cols=242 Identities=12% Similarity=0.053 Sum_probs=142.6
Q ss_pred CcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEE---EEEeCC--CeeEEEECCCCCceEEEeCCCCCeEEEEecCCC
Q 048801 265 RLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLV---ASASND--FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRP 339 (1715)
Q Consensus 265 GtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lL---ASGS~D--GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg 339 (1715)
..|.+.|.+.+.. +.+......+.+-+|||||+.+ ++...+ ..|.+.++.+|+... +....+.....+|+|||
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCC
Confidence 4677777765544 4455556677888999999752 234333 357788988776543 33355566778999999
Q ss_pred CcceEEEE-ecCCC----cEEEEecCCCCC--cceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeE
Q 048801 340 SAIYQLLS-SSDDG----TCRIWDARYSQY--SPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVF 412 (1715)
Q Consensus 340 ~~~~~LaS-gS~DG----tVrIWDl~tg~~--l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~L 412 (1715)
+ .|+. ...+| .+.+|++..+.. ...+. ..........+|+|||+.|
T Consensus 243 ~---~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt------------------------~~~~~~~~~p~wSPDG~~L 295 (428)
T PRK01029 243 K---LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL------------------------NEAFGTQGNPSFSPDGTRL 295 (428)
T ss_pred C---EEEEEECCCCCcceeEEEeecccCCCCcceEee------------------------cCCCCCcCCeEECCCCCEE
Confidence 8 4443 32223 344466654311 00110 0011223567999999987
Q ss_pred EEec-CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEE
Q 048801 413 VTGS-SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVT 491 (1715)
Q Consensus 413 atGs-~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaS 491 (1715)
+..+ .+|...||.+.... . ......+..+...+....|+|++ +.|+.
T Consensus 296 af~s~~~g~~~ly~~~~~~---~---g~~~~~lt~~~~~~~~p~wSPDG--------------------------~~Laf 343 (428)
T PRK01029 296 VFVSNKDGRPRIYIMQIDP---E---GQSPRLLTKKYRNSSCPAWSPDG--------------------------KKIAF 343 (428)
T ss_pred EEEECCCCCceEEEEECcc---c---ccceEEeccCCCCccceeECCCC--------------------------CEEEE
Confidence 7665 45655555442110 0 01123344444567788999987 55555
Q ss_pred EcC-C--CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEec---
Q 048801 492 CSR-D--GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM--- 565 (1715)
Q Consensus 492 gS~-D--GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~--- 565 (1715)
.+. + ..|.+||+.+++. ..+......+....|+|||+.|+..+.
T Consensus 344 ~~~~~g~~~I~v~dl~~g~~------------------------------~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g 393 (428)
T PRK01029 344 CSVIKGVRQICVYDLATGRD------------------------------YQLTTSPENKESPSWAIDSLHLVYSAGNSN 393 (428)
T ss_pred EEcCCCCcEEEEEECCCCCe------------------------------EEccCCCCCccceEECCCCCEEEEEECCCC
Confidence 443 2 3688888876431 111111234566899999998876543
Q ss_pred CCeEEEEECCCCceEEEEecCCCCeEEEEEccC
Q 048801 566 DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPF 598 (1715)
Q Consensus 566 DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~ 598 (1715)
...|++|++..++..... ...+.+...+|+|.
T Consensus 394 ~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 394 ESELYLISLITKKTRKIV-IGSGEKRFPSWGAF 425 (428)
T ss_pred CceEEEEECCCCCEEEee-cCCCcccCceecCC
Confidence 357999999877654443 34455677888873
No 298
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=98.86 E-value=2.5e-09 Score=103.24 Aligned_cols=73 Identities=21% Similarity=0.314 Sum_probs=65.3
Q ss_pred chhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHH
Q 048801 1631 QDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVER 1703 (1715)
Q Consensus 1631 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~ 1703 (1715)
+....|..++.....++|...+..|++|++|++||+|+.|++++++..||+.|++||..||++++.+...|+.
T Consensus 12 ~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~~A~~ 84 (84)
T PF00439_consen 12 PISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIYKAAEK 84 (84)
T ss_dssp TTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHH
T ss_pred CCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHHHHhcC
Confidence 4566677777778889999999999999999999999999999999999999999999999999999999974
No 299
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=9.7e-09 Score=121.65 Aligned_cols=175 Identities=19% Similarity=0.267 Sum_probs=134.9
Q ss_pred eEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-------CCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 048801 235 NIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSME-------TAFCLASCRGHEGDITDLAVSSNNTLVASASNDF 307 (1715)
Q Consensus 235 ~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~-------tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DG 307 (1715)
.+..+.||+..|..++--.+.+-+++++.|.+|++|.+. |..+..+++.|..+|.++.|-.+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 466789999999999888888899999999999999975 335778899999999999999998888775 78
Q ss_pred eeEEEECCCCCceEEEe--CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCC
Q 048801 308 VIRVWRLPDGLPISVLR--GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~--gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
.|.+||.--|+++.... ...+.+..+...++-.....++.++...+|+++|.+.......+.+-..
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna------------ 872 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA------------ 872 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC------------
Confidence 99999988887776432 1223344444444422111444557889999999998887666544221
Q ss_pred CCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCc
Q 048801 386 NNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSV 431 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~ 431 (1715)
.+.+..+.|++.-+.|+++++|-.+|.|.+.|.+++++
T Consensus 873 --------~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v 910 (1034)
T KOG4190|consen 873 --------PGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV 910 (1034)
T ss_pred --------CCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce
Confidence 12245589999999999999999999999999999865
No 300
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.85 E-value=6.3e-08 Score=118.15 Aligned_cols=213 Identities=15% Similarity=0.149 Sum_probs=154.2
Q ss_pred cCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccC
Q 048801 407 ANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCH 486 (1715)
Q Consensus 407 pdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~ 486 (1715)
|.+.++|....||.++||+..++++.....| ...-.+...+..|.-. +... ..+.-..........+.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p------~~~~s~t~~~~~w~L~--~~~s----~~k~~~~~~~~~~s~~t 70 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAP------IASLSGTCTYTKWGLS--ADYS----PMKWLSLEKAKKASLDT 70 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeecc------chhccCcceeEEEEEE--eccc----hHHHHhHHHHhhccCCc
Confidence 4567899999999999999988765332222 1222334455555410 0000 00000000011112334
Q ss_pred ceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC
Q 048801 487 DNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD 566 (1715)
Q Consensus 487 ~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D 566 (1715)
..++-|...|.|.+|++..++...++ ....|.+.|+++.++.+-..|.+++.|
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~---------------------------st~~h~~~v~~~~~~~~~~ciyS~~ad 123 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKL---------------------------STDKHYGNVNEILDAQRLGCIYSVGAD 123 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEE---------------------------ecCCCCCcceeeecccccCceEecCCc
Confidence 68899999999999998865532221 224588899999999999999999999
Q ss_pred CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCC-----
Q 048801 567 CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPD----- 641 (1715)
Q Consensus 567 GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPD----- 641 (1715)
+.|..|+...+..++.+.+....+.+++.+| ++.++++|+ +.|++||+.+++.+.+|.+|.++|.++.|.-+
T Consensus 124 ~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~ 200 (541)
T KOG4547|consen 124 LKVVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGII 200 (541)
T ss_pred eeEEEEecccceeeeeeccCCCccceEEEcC-CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccc
Confidence 9999999999999999999999999999999 578887775 68999999999999999999999999999887
Q ss_pred CCEEEEE-eCCCeEEEEECCC
Q 048801 642 GTSIVLS-DDVGQIYLLNTGQ 661 (1715)
Q Consensus 642 G~~LAsg-s~DG~I~IWdl~t 661 (1715)
|.++.++ ..+..|.+|-+..
T Consensus 201 G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 201 GKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cceeeeccccccceeEEEEEc
Confidence 7777654 4455677776643
No 301
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.85 E-value=1.1e-06 Score=108.53 Aligned_cols=279 Identities=15% Similarity=0.118 Sum_probs=165.5
Q ss_pred CCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCC
Q 048801 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDA 376 (1715)
Q Consensus 297 g~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~ 376 (1715)
+..|++++.+|.|..+|..+|+.+............++. ++. .++.++.+|.|..+|..+|+.+.......
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~---~v~v~~~~g~l~ald~~tG~~~W~~~~~~---- 135 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGG---LVFVGTEKGEVIALDAEDGKELWRAKLSS---- 135 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCC---EEEEEcCCCEEEEEECCCCcEeeeeccCc----
Confidence 568888889999999999999988776544332223333 233 67888899999999999988765443211
Q ss_pred ccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEE
Q 048801 377 ITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF 456 (1715)
Q Consensus 377 i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLaf 456 (1715)
.+.+.... .+..+++++.+|.|+.||..+++. +.........+ .+..
T Consensus 136 ----------------------~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~---------~W~~~~~~~~~-~~~~ 182 (377)
T TIGR03300 136 ----------------------EVLSPPLV-ANGLVVVRTNDGRLTALDAATGER---------LWTYSRVTPAL-TLRG 182 (377)
T ss_pred ----------------------eeecCCEE-ECCEEEEECCCCeEEEEEcCCCce---------eeEEccCCCce-eecC
Confidence 01111011 234566677899999999987653 11111111100 0000
Q ss_pred ccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCC
Q 048801 457 SGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGG 536 (1715)
Q Consensus 457 spdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~ 536 (1715)
... + ......++.+..+|.+..+|+.+++.. |...... + . ...
T Consensus 183 ~~s-----------------p-----~~~~~~v~~~~~~g~v~ald~~tG~~~-----W~~~~~~--~--~------g~~ 225 (377)
T TIGR03300 183 SAS-----------------P-----VIADGGVLVGFAGGKLVALDLQTGQPL-----WEQRVAL--P--K------GRT 225 (377)
T ss_pred CCC-----------------C-----EEECCEEEEECCCCEEEEEEccCCCEe-----eeecccc--C--C------CCC
Confidence 000 0 001246778888999999999886532 2211100 0 0 000
Q ss_pred CcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 537 PRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 537 ~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
....+... .....+ .+..+++++.+|.++.||..+|+.+...... ....+.. .+ ..++.++.||.|..+|
T Consensus 226 ~~~~~~~~---~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~--~~-~~vyv~~~~G~l~~~d 295 (377)
T TIGR03300 226 ELERLVDV---DGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAV--DD-NRLYVTDADGVVVALD 295 (377)
T ss_pred chhhhhcc---CCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceE--eC-CEEEEECCCCeEEEEE
Confidence 00000000 001111 3557778888999999999999988776521 1122222 23 4455667899999999
Q ss_pred CCCCceEEEEEcccc-eEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 048801 617 IWEGTPIRIYEIGRF-KLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 617 l~tgk~l~tl~~h~~-~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k 666 (1715)
..+|+.+........ ....... .+..|++++.+|.|++|+..+|+.+.
T Consensus 296 ~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 296 RRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVA 344 (377)
T ss_pred CCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 999998866532111 1222222 46789999999999999999998764
No 302
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.85 E-value=1.9e-08 Score=123.35 Aligned_cols=287 Identities=21% Similarity=0.233 Sum_probs=187.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCcEEEEecCCC--CCeEEEEECCCC---CEEEEEeCCCeeEEEECCC
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSME-TAFCLASCRGHE--GDITDLAVSSNN---TLVASASNDFVIRVWRLPD 316 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~-tgk~l~tL~gHs--~~VtsLafSpDg---~lLASGS~DGtIrVWDl~t 316 (1715)
.+.+.++.++|.|+-+|+++.-|.. |-|+. .+...+-|. |. -.|-.+.|++.. .++++.+. ..-.||++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ 100 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSN-QKAIIWNLAK 100 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCc-chhhhhhhhc
Confidence 3567788999999999999987754 44554 333333333 32 246677888743 34555544 4566898853
Q ss_pred ---CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCC
Q 048801 317 ---GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSN 393 (1715)
Q Consensus 317 ---g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~ 393 (1715)
...-..+.+|...|+.+.|.|.... .|++++.|-.+..||+++...-. ...
T Consensus 101 ss~~aIef~lhghsraitd~n~~~q~pd--Vlatcsvdt~vh~wd~rSp~~p~------------------------ys~ 154 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAITDINFNPQHPD--VLATCSVDTYVHAWDMRSPHRPF------------------------YST 154 (1081)
T ss_pred CCccceEEEEecCccceeccccCCCCCc--ceeeccccccceeeeccCCCcce------------------------eee
Confidence 3445567899999999999999875 79999999999999998654211 011
Q ss_pred CCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccc
Q 048801 394 GLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKE 473 (1715)
Q Consensus 394 ~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~ 473 (1715)
..-......++|+-....+.+.+....|.+||.+.+. .++..+++|...|+.+.|..-.
T Consensus 155 ~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs--------~pl~s~K~~vs~vn~~~fnr~~------------- 213 (1081)
T KOG0309|consen 155 SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS--------TPLCSLKGHVSSVNSIDFNRFK------------- 213 (1081)
T ss_pred ecccccCceeeecccCcchhhhccCCceEEEeccCCC--------cceEEecccceeeehHHHhhhh-------------
Confidence 1112335678888744445555567889999998763 4577888899999999887532
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEe
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW 553 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtslaf 553 (1715)
...+.+++.||+|+.||...... .|. .......+|..-.+
T Consensus 214 ------------~s~~~s~~~d~tvkfw~y~kSt~-----e~~-----------------------~~vtt~~piw~~r~ 253 (1081)
T KOG0309|consen 214 ------------YSEIMSSSNDGTVKFWDYSKSTT-----ESK-----------------------RTVTTNFPIWRGRY 253 (1081)
T ss_pred ------------hhhhcccCCCCceeeeccccccc-----ccc-----------------------eeccccCcceeccc
Confidence 46899999999999999874221 111 01111222333333
Q ss_pred CCCCC-----------EEEEEecCCeEEEEECCC-CceEEEEecCCCCeEEEEEccC---------CCcEEEEEeCCCcE
Q 048801 554 SLDNR-----------FVLAAIMDCRICVWNAVD-GSLVHSLTGHSASSYVLDVHPF---------NPRIAMSAGYDGRT 612 (1715)
Q Consensus 554 SPDG~-----------~LaTgs~DGtI~IWDl~s-g~~l~tL~gH~~~V~sLafSP~---------dg~lLaSgs~DGtI 612 (1715)
-|-|. .+..---+.....|+..+ .+++++|.||...|....|-.. ....|+|-+.|.++
T Consensus 254 ~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~l 333 (1081)
T KOG0309|consen 254 LPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTL 333 (1081)
T ss_pred cccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCce
Confidence 33222 111111223334555544 4689999999998876665321 12478999999999
Q ss_pred EEEECCC
Q 048801 613 IVWDIWE 619 (1715)
Q Consensus 613 ~VWDl~t 619 (1715)
++|-+.+
T Consensus 334 rlWpI~~ 340 (1081)
T KOG0309|consen 334 RLWPIDS 340 (1081)
T ss_pred EeeeccH
Confidence 9998854
No 303
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.85 E-value=6.1e-09 Score=103.25 Aligned_cols=70 Identities=16% Similarity=0.348 Sum_probs=66.7
Q ss_pred hhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHhhc
Q 048801 1644 QKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1644 ~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
..++|...+..||||+||++||+++-|.++.+++.|+++|++||++||.++ .+..+|..|++.|.+.+..
T Consensus 29 ~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~-~~~~~a~~L~~~Fek~~~~ 98 (102)
T cd05501 29 YIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD-DFGQVGITLEKKFEKNFKE 98 (102)
T ss_pred CCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999999999999999999999999 9999999999999988754
No 304
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.85 E-value=1.2e-07 Score=108.57 Aligned_cols=273 Identities=19% Similarity=0.252 Sum_probs=167.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-----EEEEecCCC------------CCeEEEEECCCCC--EEEE
Q 048801 242 HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF-----CLASCRGHE------------GDITDLAVSSNNT--LVAS 302 (1715)
Q Consensus 242 H~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk-----~l~tL~gHs------------~~VtsLafSpDg~--lLAS 302 (1715)
..+-|.+|.|..+|.+||||..+|.|.++.-.... ....++.|. ..|..+.|.++++ .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 34678999999999999999999999999643222 333444553 4688899988653 5666
Q ss_pred EeCCCeeEEEECCCCC-----------------------------------ceEEE-eCCCCCeEEEEecCCCCcceEEE
Q 048801 303 ASNDFVIRVWRLPDGL-----------------------------------PISVL-RGHTGAVTAIAFSPRPSAIYQLL 346 (1715)
Q Consensus 303 GS~DGtIrVWDl~tg~-----------------------------------~l~~L-~gH~~~VtsLafSPdg~~~~~La 346 (1715)
.+.|.+|++|.+.... +.+++ .+|+.-|++|.++.|.. .++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E---t~l 180 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE---TFL 180 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc---eEe
Confidence 7789999999874311 00111 25788899999999886 555
Q ss_pred EecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC-CCeEEEecCCCeEEEEe
Q 048801 347 SSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN-GTVFVTGSSDTFARVWS 425 (1715)
Q Consensus 347 SgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd-G~~LatGs~DG~IrVWD 425 (1715)
+ ..|-.|-+|++.-......+.--+|... ..-..-|++..|+|. .++|+-.++.|+|++-|
T Consensus 181 S-ADdLRINLWnlei~d~sFnIVDIKP~nm-----------------EeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 181 S-ADDLRINLWNLEIIDQSFNIVDIKPANM-----------------EELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred e-ccceeeeeccccccCCceeEEEccccCH-----------------HHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 5 4577899999864433222221111100 001234788899995 47888888999999999
Q ss_pred CCCCCccCCCCC-------ceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeE
Q 048801 426 ACKSSVEDSEQP-------IHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSA 498 (1715)
Q Consensus 426 l~t~~~~~~~~~-------~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsI 498 (1715)
++...+...... ......+..--..|..+.|+++| .++++- .=-+|
T Consensus 243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG--------------------------ryilsR-Dyltv 295 (433)
T KOG1354|consen 243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG--------------------------RYILSR-DYLTV 295 (433)
T ss_pred chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC--------------------------cEEEEe-cccee
Confidence 985543211110 01111223334567788888876 455543 33689
Q ss_pred EEEecCCCc-cCcccccccccccccCCCCCCCCCCCCCCCcccccCCC--CCeeEEEeCCCCCEEEEEecCCeEEEEECC
Q 048801 499 IIWIPRSRR-SHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP--RGVNMIVWSLDNRFVLAAIMDCRICVWNAV 575 (1715)
Q Consensus 499 rIWDl~t~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~--~~VtslafSPDG~~LaTgs~DGtI~IWDl~ 575 (1715)
++||+.... .+..... ..... ..+..+.... ..-..++|+.++.+++||+....++++++.
T Consensus 296 k~wD~nme~~pv~t~~v-h~~lr---------------~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 296 KLWDLNMEAKPVETYPV-HEYLR---------------SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred EEEeccccCCcceEEee-hHhHH---------------HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence 999985322 1111000 00000 0000000000 112357899999999999999999999976
Q ss_pred CCc
Q 048801 576 DGS 578 (1715)
Q Consensus 576 sg~ 578 (1715)
.|.
T Consensus 360 ~gs 362 (433)
T KOG1354|consen 360 RGS 362 (433)
T ss_pred CCc
Confidence 654
No 305
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=9.1e-07 Score=106.60 Aligned_cols=288 Identities=14% Similarity=0.161 Sum_probs=174.2
Q ss_pred eEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecC-----------CCcEEE
Q 048801 288 ITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD-----------DGTCRI 356 (1715)
Q Consensus 288 VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~-----------DGtVrI 356 (1715)
-+-+.|||-|.||+|--..| |.+|--.+...++.+. |. .|.-+.|||..+ ||++-+. ...|+|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~Ek---YLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEK---YLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccc---eEEEecCCccccCcccCCCceEEE
Confidence 45689999999999987765 8899876666666665 54 488999999988 8887653 257999
Q ss_pred EecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCC
Q 048801 357 WDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQ 436 (1715)
Q Consensus 357 WDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~ 436 (1715)
||+.+|.....+...... ...-.-+.||.|++++|.-.. ..|.||+..+-.
T Consensus 287 WDI~tG~lkrsF~~~~~~----------------------~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~------ 337 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSP----------------------YLKWPIFRWSHDDKYFARMTG-NSISIYETPSFM------ 337 (698)
T ss_pred EEccccchhcceeccCCC----------------------ccccceEEeccCCceeEEecc-ceEEEEecCcee------
Confidence 999999987766543211 111235789999999998776 568899876521
Q ss_pred CceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccc
Q 048801 437 PIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWT 516 (1715)
Q Consensus 437 ~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~ 516 (1715)
++..-.-.-..|....|+|.+ .. |..|-..+......++.
T Consensus 338 ---lld~Kslki~gIr~FswsP~~--------------------------~l---------lAYwtpe~~~~parvtL-- 377 (698)
T KOG2314|consen 338 ---LLDKKSLKISGIRDFSWSPTS--------------------------NL---------LAYWTPETNNIPARVTL-- 377 (698)
T ss_pred ---eecccccCCccccCcccCCCc--------------------------ce---------EEEEcccccCCcceEEE--
Confidence 111111223456777788753 22 22343332211111000
Q ss_pred ccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEec----------CCeEEEEECCCCceEEEEecC
Q 048801 517 RAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM----------DCRICVWNAVDGSLVHSLTGH 586 (1715)
Q Consensus 517 ~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~----------DGtI~IWDl~sg~~l~tL~gH 586 (1715)
.+.+....+....-+.-.=..+-|-.+|.+|+.--. -..+-|+.++..........-
T Consensus 378 -------------~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel 444 (698)
T KOG2314|consen 378 -------------MEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL 444 (698)
T ss_pred -------------EecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec
Confidence 000011111111111111223567778888875321 123455555443332222234
Q ss_pred CCCeEEEEEccCCCcEEEEEeCC--CcEEEEECCC----CceEEEEEcccceEEEEEEcCCCCEEEEE---eCCCeEEEE
Q 048801 587 SASSYVLDVHPFNPRIAMSAGYD--GRTIVWDIWE----GTPIRIYEIGRFKLVDGKFSPDGTSIVLS---DDVGQIYLL 657 (1715)
Q Consensus 587 ~~~V~sLafSP~dg~lLaSgs~D--GtI~VWDl~t----gk~l~tl~~h~~~V~svafSPDG~~LAsg---s~DG~I~IW 657 (1715)
...|...+|-|.+.++.+..+.+ .++.+|.+.+ .+++..+. ......+.|+|.|++++++ +..|.+.++
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEE
Confidence 56788999999777776665544 4788888763 23445554 3456789999999999876 557899999
Q ss_pred ECCCCccc
Q 048801 658 NTGQGESQ 665 (1715)
Q Consensus 658 dl~tGe~~ 665 (1715)
|+.-..++
T Consensus 523 D~~~a~~k 530 (698)
T KOG2314|consen 523 DTDYADLK 530 (698)
T ss_pred ecchhhhh
Confidence 98753333
No 306
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=2.6e-07 Score=112.91 Aligned_cols=291 Identities=14% Similarity=0.174 Sum_probs=195.3
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC---------------ceEEEeCCCCCeEEEEecCCCCcceEEEEec
Q 048801 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL---------------PISVLRGHTGAVTAIAFSPRPSAIYQLLSSS 349 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~---------------~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS 349 (1715)
.....|++|+....++|+|+.||.++|..+.+.. .-+++.||.+.|.-+.|..... .|-+..
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q---KLTtSD 90 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ---KLTTSD 90 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc---cccccC
Confidence 4567899999999999999999999999876531 1246789999999999998876 788999
Q ss_pred CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCC
Q 048801 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 350 ~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~ 429 (1715)
.+|.|.+|-+-.|.....+.- ......|.+++|+.+|..++....||.|.|=.+...
T Consensus 91 t~GlIiVWmlykgsW~EEMiN-----------------------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN 147 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMIN-----------------------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN 147 (1189)
T ss_pred CCceEEEEeeecccHHHHHhh-----------------------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc
Confidence 999999999877765433211 112445899999999999999999999887766544
Q ss_pred CccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccC
Q 048801 430 SVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH 509 (1715)
Q Consensus 430 ~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~ 509 (1715)
.+.. + .+.+ .....+.|+++. ..++.+-..|.+.++|....
T Consensus 148 RIwg-----K---eLkg--~~l~hv~ws~D~--------------------------~~~Lf~~ange~hlydnqgn--- 188 (1189)
T KOG2041|consen 148 RIWG-----K---ELKG--QLLAHVLWSEDL--------------------------EQALFKKANGETHLYDNQGN--- 188 (1189)
T ss_pred eecc-----h---hcch--heccceeecccH--------------------------HHHHhhhcCCcEEEeccccc---
Confidence 3211 1 1111 123357788875 45555666788888886532
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEe--------CCCCCEEEEEecCCeEEEEECCC-CceE
Q 048801 510 GKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW--------SLDNRFVLAAIMDCRICVWNAVD-GSLV 580 (1715)
Q Consensus 510 ~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtslaf--------SPDG~~LaTgs~DGtI~IWDl~s-g~~l 580 (1715)
+............. + .+...+..|..+.| -||...|+++-.+|.+.|..-.+ ..++
T Consensus 189 -----F~~Kl~~~c~Vn~t------g----~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv 253 (1189)
T KOG2041|consen 189 -----FERKLEKDCEVNGT------G----IFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV 253 (1189)
T ss_pred -----HHHhhhhceEEeee------e----eecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe
Confidence 11111111000000 0 00011112333333 35788899999999988865433 3333
Q ss_pred EEEecCCCCeEEEEEccCCCcEEEEEeCC---------CcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCC
Q 048801 581 HSLTGHSASSYVLDVHPFNPRIAMSAGYD---------GRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDV 651 (1715)
Q Consensus 581 ~tL~gH~~~V~sLafSP~dg~lLaSgs~D---------GtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~D 651 (1715)
..-.| -.|....|++ +|.+|+.+|.+ +.|.++.. -|..+.+++.....|+.++|--.|-.+|.+- |
T Consensus 254 v~dtg--m~~vgakWnh-~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-d 328 (1189)
T KOG2041|consen 254 VVDTG--MKIVGAKWNH-NGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-D 328 (1189)
T ss_pred EEecc--cEeecceecC-CCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEe-c
Confidence 32222 5577889999 77888887753 25666653 6888999998888899999998888877654 4
Q ss_pred CeEEEEECC
Q 048801 652 GQIYLLNTG 660 (1715)
Q Consensus 652 G~I~IWdl~ 660 (1715)
+.|++=++.
T Consensus 329 sfiyfanIR 337 (1189)
T KOG2041|consen 329 SFIYFANIR 337 (1189)
T ss_pred ceEEEEeec
Confidence 777776653
No 307
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.83 E-value=7e-09 Score=104.31 Aligned_cols=95 Identities=21% Similarity=0.360 Sum_probs=81.7
Q ss_pred HHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCC
Q 048801 1615 KLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKN 1694 (1715)
Q Consensus 1615 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~ 1694 (1715)
.|+..+...... ...+.+..|..+-.-...++|...+..||+++||+++|++.-|.+++++..|+++|++||..||.++
T Consensus 9 ~i~~~i~~~kd~-~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~yn~~~ 87 (106)
T cd05525 9 EICDAIITYKDS-NGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEKYYGRK 87 (106)
T ss_pred HHHHHHHHhhcc-CCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 344444443222 3445677888888888899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHH
Q 048801 1695 AALSAKVERLRDWFNR 1710 (1715)
Q Consensus 1695 ~~i~~~~~~l~~~~~~ 1710 (1715)
+.|...|+.|.+.|.+
T Consensus 88 S~i~~~A~~L~~~f~~ 103 (106)
T cd05525 88 SPIGRDVCRLRKAYYQ 103 (106)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999999986
No 308
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.81 E-value=1.6e-07 Score=114.66 Aligned_cols=169 Identities=14% Similarity=0.133 Sum_probs=136.0
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCcEEEEecC---CCCCeEEEEE------C--------------CCCCEEEEEeCCCe
Q 048801 252 DRSGRFVITGSDDRLVKIWSMETAFCLASCRG---HEGDITDLAV------S--------------SNNTLVASASNDFV 308 (1715)
Q Consensus 252 SpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~g---Hs~~VtsLaf------S--------------pDg~lLASGS~DGt 308 (1715)
.|-+.|+|....||.++||++.+++....+.. -++..++..| + .|...||-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 34567899999999999999999887766542 2333444444 1 23456788888999
Q ss_pred eEEEECCCCCceEEEe--CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 309 IRVWRLPDGLPISVLR--GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 309 IrVWDl~tg~~l~~L~--gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
|.+|++..|+....+. +|.+.|+++.++.+-. +|.+++.|+.+..|+......++....
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~---ciyS~~ad~~v~~~~~~~~~~~~~~~~---------------- 142 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG---CIYSVGADLKVVYILEKEKVIIRIWKE---------------- 142 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccC---ceEecCCceeEEEEecccceeeeeecc----------------
Confidence 9999999999888876 6999999999998876 899999999999999988776554432
Q ss_pred CCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccC
Q 048801 387 NGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGC 459 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspd 459 (1715)
....+.+++++|||..+++|+ +.|.+||+.+. +.+..+.||.++|++++|...
T Consensus 143 ---------~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~k---------evv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 143 ---------QKPLVSSLCISPDGKILLTAS--RQIKVLDIETK---------EVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred ---------CCCccceEEEcCCCCEEEecc--ceEEEEEccCc---------eEEEEecCCCcceEEEEEEEe
Confidence 233478999999999999987 79999999885 458899999999999999764
No 309
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.81 E-value=4.2e-09 Score=105.06 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=70.6
Q ss_pred hhhhhHHHHHHh--hhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHH
Q 048801 1632 DYYGIQRLNEAA--QKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFN 1709 (1715)
Q Consensus 1632 ~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~ 1709 (1715)
....|..+++.. ..++|...+..|+|++||+.||+++.|+++.++..|+++|++||.+||.+++.|..+|+.|.+.|.
T Consensus 17 ~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~s~i~~~a~~l~~~fe 96 (99)
T cd05506 17 WGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPGNDVHTMAKELLKIFE 96 (99)
T ss_pred CCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 344555555433 468899999999999999999999999999999999999999999999999999999999999987
Q ss_pred HH
Q 048801 1710 RT 1711 (1715)
Q Consensus 1710 ~~ 1711 (1715)
+.
T Consensus 97 ~~ 98 (99)
T cd05506 97 TR 98 (99)
T ss_pred Hh
Confidence 53
No 310
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.79 E-value=5.1e-07 Score=102.12 Aligned_cols=277 Identities=16% Similarity=0.129 Sum_probs=179.3
Q ss_pred CCeeEEEECCCCCceE--EE-eCCCCCeEEEEecCC--CCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCc
Q 048801 306 DFVIRVWRLPDGLPIS--VL-RGHTGAVTAIAFSPR--PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGK 380 (1715)
Q Consensus 306 DGtIrVWDl~tg~~l~--~L-~gH~~~VtsLafSPd--g~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~ 380 (1715)
.|.+.+|++.+.+.+. ++ ...+..+..+.|+-. +.. ..|+-+-.+|.|.++..........+. .+
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~-~~l~~a~a~G~i~~~r~~~~~ss~~L~------~l--- 114 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGD-FNLLDAHARGQIQLYRNDEDESSVHLR------GL--- 114 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCcc-ceeeeccccceEEEEeeccceeeeeec------cc---
Confidence 3678888887654432 11 223455677777632 222 256777788889888764332211110 00
Q ss_pred cCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCc
Q 048801 381 SNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 381 ~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg 460 (1715)
...........++.|++.|..++++..+|.+.+-+..... ...++..+.|.-.+.-..|+...
T Consensus 115 ----------s~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~-------le~vq~wk~He~E~Wta~f~~~~ 177 (339)
T KOG0280|consen 115 ----------SSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMV-------LEKVQTWKVHEFEAWTAKFSDKE 177 (339)
T ss_pred ----------chhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceee-------eeecccccccceeeeeeecccCC
Confidence 0000011135788899999999999999999865554322 34455788899888888887643
Q ss_pred ccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc
Q 048801 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR 540 (1715)
Q Consensus 461 ~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 540 (1715)
++.+.+|+.||.+..||++... ......
T Consensus 178 -------------------------pnlvytGgDD~~l~~~D~R~p~---------------------------~~i~~n 205 (339)
T KOG0280|consen 178 -------------------------PNLVYTGGDDGSLSCWDIRIPK---------------------------TFIWHN 205 (339)
T ss_pred -------------------------CceEEecCCCceEEEEEecCCc---------------------------ceeeec
Confidence 4789999999999999998311 001112
Q ss_pred ccCCCCCeeEEEeCC-CCCEEEEEecCCeEEEEECCC-CceEEEEecCCCCeEEEEEccCCCc-EEEEEeCCCcEEEEEC
Q 048801 541 LLPTPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAVD-GSLVHSLTGHSASSYVLDVHPFNPR-IAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 541 l~~h~~~VtslafSP-DG~~LaTgs~DGtI~IWDl~s-g~~l~tL~gH~~~V~sLafSP~dg~-lLaSgs~DGtI~VWDl 617 (1715)
...|..+|.+|.-+| .+.+|+||+.|-.|++||.++ ++++..-. -.+.|+.+.++|.... +|+++-..| ++|-++
T Consensus 206 ~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~ 283 (339)
T KOG0280|consen 206 SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDS 283 (339)
T ss_pred ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEe
Confidence 345777898888875 688999999999999999984 56655433 3478999999996554 444554555 777776
Q ss_pred CCC--c---eEEEEEcccceEEEEEEcCCCCEEEEE-eCCCeEE-EEECCCCc
Q 048801 618 WEG--T---PIRIYEIGRFKLVDGKFSPDGTSIVLS-DDVGQIY-LLNTGQGE 663 (1715)
Q Consensus 618 ~tg--k---~l~tl~~h~~~V~svafSPDG~~LAsg-s~DG~I~-IWdl~tGe 663 (1715)
..+ + .+.....|.+-+....|..-...||++ ..|..|+ +|-..+++
T Consensus 284 ~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 284 SDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred cccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 553 3 344455566666777775545567775 4566644 77766664
No 311
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.76 E-value=2.1e-07 Score=106.89 Aligned_cols=254 Identities=18% Similarity=0.266 Sum_probs=180.3
Q ss_pred CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEe-cCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCC
Q 048801 318 LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD-ARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396 (1715)
Q Consensus 318 ~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWD-l~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h 396 (1715)
..+..+.||...|+....-|... -+++.+.|.+++||- .+.++.-+.+.. ..
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~---gv~~~s~drtvrv~lkrds~q~wpsI~~------------------------~m 67 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEE---GVISVSEDRTVRVWLKRDSGQYWPSIYH------------------------YM 67 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCC---CeEEccccceeeeEEeccccccCchhhh------------------------hC
Confidence 34567789999999888888766 689999999999994 333443333322 12
Q ss_pred CcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccc
Q 048801 397 SHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENV 476 (1715)
Q Consensus 397 ~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~ 476 (1715)
...++++.+.++...|++|-..|++.-+.+... ......++....|...|..+.|+-.
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sed-----fnkm~~~r~~~~h~~~v~~~if~~~----------------- 125 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSED-----FNKMTFLKDYLAHQARVSAIVFSLT----------------- 125 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhh-----hhhcchhhhhhhhhcceeeEEecCC-----------------
Confidence 445889999999999999999999998877531 2223345667789999999999754
Q ss_pred ccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC
Q 048801 477 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD 556 (1715)
Q Consensus 477 ~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD 556 (1715)
+..+++.+.|..+.---.+++..++.. .+... -+++.+.-.
T Consensus 126 ---------~e~V~s~~~dk~~~~hc~e~~~~lg~Y-------~~~~~-----------------------~t~~~~d~~ 166 (404)
T KOG1409|consen 126 ---------HEWVLSTGKDKQFAWHCTESGNRLGGY-------NFETP-----------------------ASALQFDAL 166 (404)
T ss_pred ---------ceeEEEeccccceEEEeeccCCcccce-------Eeecc-----------------------CCCCceeeE
Confidence 378899998887765444433222111 00000 001111111
Q ss_pred CCEEEEEecCCeEEEEEC--CCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce-EEEEEcccceE
Q 048801 557 NRFVLAAIMDCRICVWNA--VDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTP-IRIYEIGRFKL 633 (1715)
Q Consensus 557 G~~LaTgs~DGtI~IWDl--~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~-l~tl~~h~~~V 633 (1715)
+...|...|.|.+-.+ ....++.++.+|.+.++++.|.+ ..++|.+|..|..|.+||+--.+- ...+.+|...|
T Consensus 167 --~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV 243 (404)
T KOG1409|consen 167 --YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKV 243 (404)
T ss_pred --EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhh
Confidence 4445555555554433 45667889999999999999999 788999999999999999965433 34556788889
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 634 VDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 634 ~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
..+..-+--+.|++++.||.|.+|++...
T Consensus 244 ~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 244 QALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 88888888899999999999999998654
No 312
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.75 E-value=8.7e-06 Score=101.48 Aligned_cols=310 Identities=13% Similarity=0.065 Sum_probs=182.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecCCCC----------CeE-EEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLASCRGHEG----------DIT-DLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL 323 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~----------~Vt-sLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L 323 (1715)
+..|++++.+|.|.-+|..+|+.+-...-... .+. .++. ++..|+.++.+|.+..+|..+|+.+...
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 55777788889999999999988776542210 000 1111 3556778888999999999999988877
Q ss_pred eCCCCCeEE-EEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeE
Q 048801 324 RGHTGAVTA-IAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILC 402 (1715)
Q Consensus 324 ~gH~~~Vts-LafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vts 402 (1715)
.... .+.+ ..+. ++ .++.++.+|.|..+|..+|+.+.......+.... .....++
T Consensus 147 ~~~~-~~~ssP~v~-~~----~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~----------------~~~~sP~-- 202 (394)
T PRK11138 147 KVAG-EALSRPVVS-DG----LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL----------------RGESAPA-- 202 (394)
T ss_pred cCCC-ceecCCEEE-CC----EEEEECCCCEEEEEEccCCCEeeeecCCCCcccc----------------cCCCCCE--
Confidence 6432 2222 2222 22 5777888999999999999877665432110000 0001111
Q ss_pred EEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCC-CCeeEEEEccCcccccccccccccccccccccC
Q 048801 403 CAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE-NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKN 481 (1715)
Q Consensus 403 lafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~-~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~ 481 (1715)
.. ++ .++.++.+|.+..+|..+++.......... ...+. .....+..+|
T Consensus 203 --v~-~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~---~~~~~~~~~~~~~~sP----------------------- 252 (394)
T PRK11138 203 --TA-FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQP---TGATEIDRLVDVDTTP----------------------- 252 (394)
T ss_pred --EE-CC-EEEEEcCCCEEEEEEccCChhhheeccccC---CCccchhcccccCCCc-----------------------
Confidence 11 23 456677788888888887653211100000 00000 0000000011
Q ss_pred CcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEE
Q 048801 482 SWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL 561 (1715)
Q Consensus 482 s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~La 561 (1715)
....+.++.++.+|.+..+|+.+++.. |...+. ....+. ..+..|+
T Consensus 253 -~v~~~~vy~~~~~g~l~ald~~tG~~~-----W~~~~~--------------------------~~~~~~--~~~~~vy 298 (394)
T PRK11138 253 -VVVGGVVYALAYNGNLVALDLRSGQIV-----WKREYG--------------------------SVNDFA--VDGGRIY 298 (394)
T ss_pred -EEECCEEEEEEcCCeEEEEECCCCCEE-----EeecCC--------------------------CccCcE--EECCEEE
Confidence 011356777788999999999886532 321110 000111 2456777
Q ss_pred EEecCCeEEEEECCCCceEEEEecCC-CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEE-EEEc
Q 048801 562 AAIMDCRICVWNAVDGSLVHSLTGHS-ASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVD-GKFS 639 (1715)
Q Consensus 562 Tgs~DGtI~IWDl~sg~~l~tL~gH~-~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~s-vafS 639 (1715)
+++.+|.|..+|..+|+.+.....-. ....+..+. ++ .|+.++.||.|.+.|..+|+.+.........+.. ..+
T Consensus 299 ~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g-~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~- 374 (394)
T PRK11138 299 LVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NG-YLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV- 374 (394)
T ss_pred EEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CC-EEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-
Confidence 78889999999999998876543211 112222231 33 4567889999999999999999888754333332 222
Q ss_pred CCCCEEEEEeCCCeEEEEEC
Q 048801 640 PDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 640 PDG~~LAsgs~DG~I~IWdl 659 (1715)
.+..|++++.+|.|+.++.
T Consensus 375 -~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 375 -ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred -ECCEEEEEeCCceEEEEeC
Confidence 2457888999999998874
No 313
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.75 E-value=1.4e-08 Score=101.99 Aligned_cols=96 Identities=17% Similarity=0.267 Sum_probs=84.2
Q ss_pred HHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCC
Q 048801 1614 DKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIK 1693 (1715)
Q Consensus 1614 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~ 1693 (1715)
++++..+.++... ...+-+..|..+.+....++|...+..||++++|++||+++.|.++.++..|+++|++||..||.+
T Consensus 7 ~~i~~~v~~~~d~-~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~ 85 (104)
T cd05522 7 KNILKGLRKERDE-NGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNEN 85 (104)
T ss_pred HHHHHHHHHHhCc-CCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4567777776554 235566677777777788999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHH
Q 048801 1694 NAALSAKVERLRDWFNR 1710 (1715)
Q Consensus 1694 ~~~i~~~~~~l~~~~~~ 1710 (1715)
++.|...|..|.+.|.+
T Consensus 86 ~s~i~~~A~~l~~~f~~ 102 (104)
T cd05522 86 DSQEYKDAVLLEKEARL 102 (104)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999999975
No 314
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.74 E-value=3.6e-08 Score=130.34 Aligned_cols=225 Identities=12% Similarity=0.219 Sum_probs=165.3
Q ss_pred CEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCc
Q 048801 298 TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAI 377 (1715)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i 377 (1715)
+.+.....++...-|..+-+. ..+..+-..|.++.-+|... +.++|+.||.|++|....++.+......
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~--~~~k~~v~~v~r~~sHp~~~---~Yltgs~dgsv~~~~w~~~~~v~~~rt~------ 2249 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGAS--VMIKHPVENVRRMTSHPSDP---YYLTGSQDGSVRMFEWGHGQQVVCFRTA------ 2249 (2439)
T ss_pred ccCCcccCCccccceecccce--eEeecccCceeeecCCCCCc---eEEecCCCceEEEEeccCCCeEEEeecc------
Confidence 344444445555555543222 12333556788888888776 7899999999999999887765544321
Q ss_pred cCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEc
Q 048801 378 TGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS 457 (1715)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafs 457 (1715)
....|+.+.|+.+|+.+..+..||.+.+|.+.. ++......|......+.|.
T Consensus 2250 ------------------g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p----------k~~~s~qchnk~~~Df~Fi 2301 (2439)
T KOG1064|consen 2250 ------------------GNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP----------KPYTSWQCHNKALSDFRFI 2301 (2439)
T ss_pred ------------------CcchhhhhhhcccCCceeeeccCCceeecccCC----------cceeccccCCccccceeee
Confidence 125688999999999999999999999999862 3455566777777777776
Q ss_pred cCcccccccccccccccccccccCCcccCceEEEEc---CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCC
Q 048801 458 GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS---RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534 (1715)
Q Consensus 458 pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS---~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 534 (1715)
.. .+++.+ .++.+.+||.--.. .
T Consensus 2302 ~s----------------------------~~~tag~s~d~~n~~lwDtl~~~--------------------------~ 2327 (2439)
T KOG1064|consen 2302 GS----------------------------LLATAGRSSDNRNVCLWDTLLPP--------------------------M 2327 (2439)
T ss_pred eh----------------------------hhhccccCCCCCcccchhcccCc--------------------------c
Confidence 53 344443 56789999864200 0
Q ss_pred CCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEE
Q 048801 535 GGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIV 614 (1715)
Q Consensus 535 g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~V 614 (1715)
...+ ...|.++++++++-|..++|++|+.+|.|+|||++..++++++.. ++ ...++++|+..|.|+|
T Consensus 2328 ~s~v--~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~--~~~~f~~~ss~g~ikI 2394 (2439)
T KOG1064|consen 2328 NSLV--HTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD--TREYFVTGSSEGNIKI 2394 (2439)
T ss_pred ccee--eeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh--hhheeeccCcccceEE
Confidence 1111 167899999999999999999999999999999999888887764 32 3568889999999999
Q ss_pred EECCCCceEEEEEc
Q 048801 615 WDIWEGTPIRIYEI 628 (1715)
Q Consensus 615 WDl~tgk~l~tl~~ 628 (1715)
|++.....+.++..
T Consensus 2395 w~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2395 WRLSEFGLLHTFPS 2408 (2439)
T ss_pred EEccccchhhcCch
Confidence 99998888877764
No 315
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.72 E-value=1.3e-08 Score=132.27 Aligned_cols=102 Identities=18% Similarity=0.259 Sum_probs=81.5
Q ss_pred ChHHHHHHhhhHHHhhhhccccchhhhhHHHHH--HhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Q 048801 1609 DSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNE--AAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSN 1686 (1715)
Q Consensus 1609 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~N 1686 (1715)
....-+.++..|.+|... .....|..+++ .|.=|||...+.-||||+|||.||++.+|+....+..|||+||.|
T Consensus 220 ~~~~lk~C~~iLk~l~~~----k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~N 295 (640)
T KOG1474|consen 220 TVELLKQCLSILKRLMKH----KHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDN 295 (640)
T ss_pred cHHHHHHHHHHHHHHHhc----cCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHH
Confidence 334444455555555543 22244444443 344589999999999999999999999999999999999999999
Q ss_pred hhhccCCChHHHHHHHHHHHHHHHHhhc
Q 048801 1687 AESYFIKNAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1687 a~~~n~~~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
|++||.+++++..||+.|.+.|......
T Consensus 296 cm~YNp~g~dV~~Ma~~L~~~Fe~rw~~ 323 (640)
T KOG1474|consen 296 CMTYNPEGSDVYAMAKKLQEVFEERWAS 323 (640)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999987665
No 316
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.70 E-value=2.5e-08 Score=98.52 Aligned_cols=81 Identities=21% Similarity=0.323 Sum_probs=73.8
Q ss_pred chhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHH
Q 048801 1631 QDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNR 1710 (1715)
Q Consensus 1631 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~ 1710 (1715)
..+..|..+......++|...+..|+++.+|+.||++++|.+++++..|++.|+.||..||.+++.+..+|+.|.+.|.+
T Consensus 18 ~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~~~~~~~a~~l~~~~~~ 97 (99)
T cd04369 18 DLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEK 97 (99)
T ss_pred cccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 44555666666677889999999999999999999999999999999999999999999999999999999999999876
Q ss_pred H
Q 048801 1711 T 1711 (1715)
Q Consensus 1711 ~ 1711 (1715)
.
T Consensus 98 ~ 98 (99)
T cd04369 98 L 98 (99)
T ss_pred h
Confidence 5
No 317
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.69 E-value=1.3e-07 Score=125.18 Aligned_cols=221 Identities=12% Similarity=0.225 Sum_probs=160.5
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe-CCCCCeEEEEec
Q 048801 258 VITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR-GHTGAVTAIAFS 336 (1715)
Q Consensus 258 LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~-gH~~~VtsLafS 336 (1715)
......+++..-|..+.+.. .++.+-..|.++.-+|...+.+||+.||.|++|....+..+..++ .....|+.+.|+
T Consensus 2183 ~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~ 2260 (2439)
T KOG1064|consen 2183 FTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFN 2260 (2439)
T ss_pred CCcccCCccccceeccccee--EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhc
Confidence 33334455555555443222 234456678889889999999999999999999999998888775 233889999999
Q ss_pred CCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec
Q 048801 337 PRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS 416 (1715)
Q Consensus 337 Pdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs 416 (1715)
.+|+ .+..+..||.+.+|.+... +......|......+.|-. ..+++++
T Consensus 2261 ~qGn---k~~i~d~dg~l~l~q~~pk--------------------------~~~s~qchnk~~~Df~Fi~--s~~~tag 2309 (2439)
T KOG1064|consen 2261 HQGN---KFGIVDGDGDLSLWQASPK--------------------------PYTSWQCHNKALSDFRFIG--SLLATAG 2309 (2439)
T ss_pred ccCC---ceeeeccCCceeecccCCc--------------------------ceeccccCCccccceeeee--hhhhccc
Confidence 9998 7888899999999987511 1112234555566677755 5566654
Q ss_pred ---CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEc
Q 048801 417 ---SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS 493 (1715)
Q Consensus 417 ---~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS 493 (1715)
.++.+.+||...... ...+. ..|.+.++++++.|.. ..|++|+
T Consensus 2310 ~s~d~~n~~lwDtl~~~~------~s~v~--~~H~~gaT~l~~~P~~--------------------------qllisgg 2355 (2439)
T KOG1064|consen 2310 RSSDNRNVCLWDTLLPPM------NSLVH--TCHDGGATVLAYAPKH--------------------------QLLISGG 2355 (2439)
T ss_pred cCCCCCcccchhcccCcc------cceee--eecCCCceEEEEcCcc--------------------------eEEEecC
Confidence 478899999854211 12233 7899999999999974 7999999
Q ss_pred CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEE
Q 048801 494 RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN 573 (1715)
Q Consensus 494 ~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWD 573 (1715)
.+|.|.+||++.++..... . ++. ...++++|+..|.|+||+
T Consensus 2356 r~G~v~l~D~rqrql~h~~-----------------------------~---------~~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTF-----------------------------Q---------ALD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred CcCcEEEeehHHHHHHHHh-----------------------------h---------hhh-hhheeeccCcccceEEEE
Confidence 9999999999865422211 0 033 456889999999999999
Q ss_pred CCCCceEEEEe
Q 048801 574 AVDGSLVHSLT 584 (1715)
Q Consensus 574 l~sg~~l~tL~ 584 (1715)
+....+++++.
T Consensus 2397 ~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2397 LSEFGLLHTFP 2407 (2439)
T ss_pred ccccchhhcCc
Confidence 99888877765
No 318
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.67 E-value=1.1e-05 Score=111.24 Aligned_cols=275 Identities=13% Similarity=0.136 Sum_probs=163.6
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEeCCCCcEEEEecC--C------------CCCeEEEEECCCCCEEEEEe-CCCeeEE
Q 048801 248 CAIFDRS-GRFVITGSDDRLVKIWSMETAFCLASCRG--H------------EGDITDLAVSSNNTLVASAS-NDFVIRV 311 (1715)
Q Consensus 248 ~VafSpD-G~~LaTGS~DGtIrIWDl~tgk~l~tL~g--H------------s~~VtsLafSpDg~lLASGS-~DGtIrV 311 (1715)
.++++++ |+++++-+.++.|.+||.. +..+..+.+ . -.....|++++++..|+++. ..+.|++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 5788874 5566776778999999976 444444332 1 12357899999888666654 4578999
Q ss_pred EECCCCCceEEEeCC-----------------CCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCC
Q 048801 312 WRLPDGLPISVLRGH-----------------TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPP 374 (1715)
Q Consensus 312 WDl~tg~~l~~L~gH-----------------~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~ 374 (1715)
+|+.++. +.++.+- -...+.|+|+|++.. .+++.+.++.|++||..++... .+.-.
T Consensus 651 id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~--LyVad~~~~~I~v~d~~~g~v~-~~~G~--- 723 (1057)
T PLN02919 651 IDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK--VYIAMAGQHQIWEYNISDGVTR-VFSGD--- 723 (1057)
T ss_pred EecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe--EEEEECCCCeEEEEECCCCeEE-EEecC---
Confidence 9987654 4444211 112468999995542 5677788899999998776432 11100
Q ss_pred CCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeE
Q 048801 375 DAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNY 453 (1715)
Q Consensus 375 ~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~s 453 (1715)
|.... .... ......-.....++|+|+|. ++++.+.++.|++||+.++.. ..+.+ ...+
T Consensus 724 ----G~~~~--~~g~-~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~----------~~~~g-g~~~-- 783 (1057)
T PLN02919 724 ----GYERN--LNGS-SGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS----------RLLAG-GDPT-- 783 (1057)
T ss_pred ----Ccccc--CCCC-ccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE----------EEEEe-cccc--
Confidence 00000 0000 00011123457799999987 555666678999999865310 00000 0000
Q ss_pred EEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCC
Q 048801 454 VQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPP 533 (1715)
Q Consensus 454 Lafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 533 (1715)
+ +. ...-.+..||..
T Consensus 784 --~-~~---------------------------~l~~fG~~dG~g----------------------------------- 798 (1057)
T PLN02919 784 --F-SD---------------------------NLFKFGDHDGVG----------------------------------- 798 (1057)
T ss_pred --c-Cc---------------------------ccccccCCCCch-----------------------------------
Confidence 0 00 000001111100
Q ss_pred CCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe-------------cCCCCeEEEEEccCCC
Q 048801 534 RGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT-------------GHSASSYVLDVHPFNP 600 (1715)
Q Consensus 534 ~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~-------------gH~~~V~sLafSP~dg 600 (1715)
..... .....++++++|.++++-..+++|++||..++....... +.-.....|++++ ++
T Consensus 799 ----~~~~l---~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG 870 (1057)
T PLN02919 799 ----SEVLL---QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NG 870 (1057)
T ss_pred ----hhhhc---cCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CC
Confidence 00001 123468999999998988999999999998876553321 1112467899999 66
Q ss_pred cEEEEEeCCCcEEEEECCCCceE
Q 048801 601 RIAMSAGYDGRTIVWDIWEGTPI 623 (1715)
Q Consensus 601 ~lLaSgs~DGtI~VWDl~tgk~l 623 (1715)
+++++-+.+++|++||+.+++..
T Consensus 871 ~lyVaDt~Nn~Irvid~~~~~~~ 893 (1057)
T PLN02919 871 RLFVADTNNSLIRYLDLNKGEAA 893 (1057)
T ss_pred CEEEEECCCCEEEEEECCCCccc
Confidence 88888889999999999988753
No 319
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.65 E-value=1.1e-05 Score=111.08 Aligned_cols=279 Identities=14% Similarity=0.070 Sum_probs=159.9
Q ss_pred EEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCC
Q 048801 331 TAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT 410 (1715)
Q Consensus 331 tsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~ 410 (1715)
..+++.+.+.. ++++-+.++.|++||.. +..+..+...... |. ..+. .....-.....++++++++
T Consensus 571 ~gvavd~~~g~--lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~----G~-----~dG~--~~~a~f~~P~GIavd~~gn 636 (1057)
T PLN02919 571 GKLAIDLLNNR--LFISDSNHNRIVVTDLD-GNFIVQIGSTGEE----GL-----RDGS--FEDATFNRPQGLAYNAKKN 636 (1057)
T ss_pred ceEEEECCCCe--EEEEECCCCeEEEEeCC-CCEEEEEccCCCc----CC-----CCCc--hhccccCCCcEEEEeCCCC
Confidence 46788775442 56777788899999975 3332222110000 00 0000 0011223467899999887
Q ss_pred eEEEe-cCCCeEEEEeCCCCCccCCCCCceeeeeecCC-------CCCeeEEEEccCcccccccccccccccccccccCC
Q 048801 411 VFVTG-SSDTFARVWSACKSSVEDSEQPIHELDVLSGH-------ENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNS 482 (1715)
Q Consensus 411 ~LatG-s~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH-------~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s 482 (1715)
.|.++ ..++.|+++|+.++.+..............+. -..-..++|++++
T Consensus 637 ~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~---------------------- 694 (1057)
T PLN02919 637 LLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVN---------------------- 694 (1057)
T ss_pred EEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCC----------------------
Confidence 55444 45678999998764321000000000000000 0122456776632
Q ss_pred cccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEE-E
Q 048801 483 WFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFV-L 561 (1715)
Q Consensus 483 ~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~L-a 561 (1715)
...+++.+.++.|++||..++......+.. +.. ...+.. .....-.....|+++|+|..| +
T Consensus 695 ---g~LyVad~~~~~I~v~d~~~g~v~~~~G~G---~~~----------~~~g~~--~~~~~~~~P~GIavspdG~~LYV 756 (1057)
T PLN02919 695 ---EKVYIAMAGQHQIWEYNISDGVTRVFSGDG---YER----------NLNGSS--GTSTSFAQPSGISLSPDLKELYI 756 (1057)
T ss_pred ---CeEEEEECCCCeEEEEECCCCeEEEEecCC---ccc----------cCCCCc--cccccccCccEEEEeCCCCEEEE
Confidence 357788888999999998765421110000 000 000000 000112346779999999855 4
Q ss_pred EEecCCeEEEEECCCCceEEEEec-------------C--------CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC
Q 048801 562 AAIMDCRICVWNAVDGSLVHSLTG-------------H--------SASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG 620 (1715)
Q Consensus 562 Tgs~DGtI~IWDl~sg~~l~tL~g-------------H--------~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg 620 (1715)
+.+.++.|++||+.++.......+ + -....++++++ ++.++++-..+++|++||..++
T Consensus 757 ADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg 835 (1057)
T PLN02919 757 ADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATK 835 (1057)
T ss_pred EECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCC
Confidence 555678999999987653221110 0 11235788988 6678888889999999999887
Q ss_pred ceEEEEEcc-------------cceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Q 048801 621 TPIRIYEIG-------------RFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGES 664 (1715)
Q Consensus 621 k~l~tl~~h-------------~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~ 664 (1715)
........+ -.....++++++|+++++-+.++.|++|++.+++.
T Consensus 836 ~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 836 RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred eEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 665433211 11356889999999888888899999999988764
No 320
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=9.8e-07 Score=104.25 Aligned_cols=321 Identities=18% Similarity=0.155 Sum_probs=203.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC--C-cEEEEecCCCCCeEEEEECCCCCEEEEEeC-CCeeEEEECCC
Q 048801 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET--A-FCLASCRGHEGDITDLAVSSNNTLVASASN-DFVIRVWRLPD 316 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~t--g-k~l~tL~gHs~~VtsLafSpDg~lLASGS~-DGtIrVWDl~t 316 (1715)
-|.+.|+.|..+. .+++++++.||.++.|.-.. | +.+..+..|.+.|.+++.+-++.+++|++. |..++++|+.+
T Consensus 7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 3888888887664 46999999999999997543 2 445567789999999999999999999888 99999999987
Q ss_pred CCceEEEeC--CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 317 GLPISVLRG--HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 317 g~~l~~L~g--H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
-..+..+.- -.+.+. +..++.......-++.-.+|.+.|+|-..+.+. ......
T Consensus 86 ~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q-----------------------~~~fkk 141 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ-----------------------DGYFKK 141 (558)
T ss_pred cchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCc-----------------------cceecc
Confidence 655533321 122222 222332221112334456788999986543321 223345
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCeEEEEeCCC------CCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccc
Q 048801 395 LQSHQILCCAYNANGTVFVTGSSDTFARVWSACK------SSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMS 468 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t------~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~ 468 (1715)
.|..+|.++.+++-+..+++....|.|.-|.... .++.........+..+........++.|+|++
T Consensus 142 lH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-------- 213 (558)
T KOG0882|consen 142 LHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-------- 213 (558)
T ss_pred cccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc--------
Confidence 6788899999999999999999999999999873 11111111111122223344567788899886
Q ss_pred ccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCC---CCcccccCCC
Q 048801 469 DAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRG---GPRQRLLPTP 545 (1715)
Q Consensus 469 ~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g---~~~~~l~~h~ 545 (1715)
..+.+-+.|..|+++++.+++....+.......+.....+-......-+ .....+..|.
T Consensus 214 ------------------~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~ 275 (558)
T KOG0882|consen 214 ------------------AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHG 275 (558)
T ss_pred ------------------CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhc
Confidence 6888888999999999999886654433222222111110000000000 0001112222
Q ss_pred -CCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCe--------------------------EEEEEccC
Q 048801 546 -RGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASS--------------------------YVLDVHPF 598 (1715)
Q Consensus 546 -~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V--------------------------~sLafSP~ 598 (1715)
..-+.++|...|++|+-|+.=| |+|.++.++++++.+-... .| -.+.+.+
T Consensus 276 ~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e-~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~- 352 (558)
T KOG0882|consen 276 STVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDE-AIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQK- 352 (558)
T ss_pred CcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccch-hhhhhhHHHHhhhhhccchhhhhhhccCcccccCC-
Confidence 2345678999999999888765 8899999988877663111 11 1122444
Q ss_pred CCcEEEEEeCCCcEEEE
Q 048801 599 NPRIAMSAGYDGRTIVW 615 (1715)
Q Consensus 599 dg~lLaSgs~DGtI~VW 615 (1715)
|+.+++++-...+++++
T Consensus 353 dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 353 DPTIVCTAFKKNRFYLF 369 (558)
T ss_pred CCeEEEeeeecceEEEE
Confidence 67788777777888887
No 321
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=98.59 E-value=6.2e-08 Score=97.48 Aligned_cols=72 Identities=18% Similarity=0.111 Sum_probs=66.8
Q ss_pred hhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1644 QKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1644 ~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
..++|...+.-|||++||++||++.-|++++++..||++|++||.+||.+++.+...|+.|-.-..+-|+.|
T Consensus 35 ~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~s~~~~~A~~l~~d~~~el~Ei 106 (109)
T cd05492 35 KLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGADSEQYDAARWLYRDTCHDLREL 106 (109)
T ss_pred cCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 468888999999999999999999999999999999999999999999999999999999988887776653
No 322
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.56 E-value=1.5e-06 Score=98.38 Aligned_cols=285 Identities=11% Similarity=0.175 Sum_probs=172.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC-----ceEEEeCCC------------CCeEEEEecCCCCcceEEEE
Q 048801 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL-----PISVLRGHT------------GAVTAIAFSPRPSAIYQLLS 347 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~-----~l~~L~gH~------------~~VtsLafSPdg~~~~~LaS 347 (1715)
...|+++.|...|.||++|...|.|.++.-.... ....+++|. ..|..|.|..++... .++.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~-hFLl 104 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN-HFLL 104 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcc-eEEE
Confidence 4579999999999999999999999999754322 223355554 357889998776544 6777
Q ss_pred ecCCCcEEEEecCCCCCc--c------eecCCCC--CCCcc----Ccc----CCCCCCCCCCCCCCCCcceeEEEEccCC
Q 048801 348 SSDDGTCRIWDARYSQYS--P------RIYLPKP--PDAIT----GKS----NVPSNNGPSSSNGLQSHQILCCAYNANG 409 (1715)
Q Consensus 348 gS~DGtVrIWDl~tg~~l--~------~i~~~~~--~~~i~----g~~----~~~~~~~~~~~~~~h~~~VtslafSpdG 409 (1715)
.+.|.+|++|.+....+. . .+..+.. ..... +.. ..............|...|.++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 788999999998654211 1 0111100 00000 000 0000011122335678889999999999
Q ss_pred CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCC-----CCCeeEEEEccCcccccccccccccccccccccCCcc
Q 048801 410 TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGH-----ENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWF 484 (1715)
Q Consensus 410 ~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH-----~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~ 484 (1715)
..++++ .|-.|.+|++..... .. .+-.+..| +.-|++..|+|..
T Consensus 185 et~lSa-DdLrINLWnl~i~D~-----sF-nIVDiKP~nmeeLteVItSaeFhp~~------------------------ 233 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDG-----SF-NIVDIKPHNMEELTEVITSAEFHPEM------------------------ 233 (460)
T ss_pred heeeec-cceeeeeccccccCC-----ce-EEEeccCccHHHHHHHHhhcccCHhH------------------------
Confidence 888877 478899999864211 11 11122222 2356677777754
Q ss_pred cCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe
Q 048801 485 CHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI 564 (1715)
Q Consensus 485 ~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs 564 (1715)
-..+...+..|.|++-|++........ ...+.. ...+....-+......|..+.|+++|++|++-.
T Consensus 234 -cn~fmYSsSkG~Ikl~DlRq~alcdn~---~klfe~----------~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd 299 (460)
T COG5170 234 -CNVFMYSSSKGEIKLNDLRQSALCDNS---KKLFEL----------TIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD 299 (460)
T ss_pred -cceEEEecCCCcEEehhhhhhhhccCc---hhhhhh----------ccCcccchhHHHHhhhhcceEEcCCCcEEEEec
Confidence 267888899999999999853211100 001110 111111122233445688999999999999765
Q ss_pred cCCeEEEEECCC-CceEEEEecCC------------CCe---EEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 565 MDCRICVWNAVD-GSLVHSLTGHS------------ASS---YVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 565 ~DGtI~IWDl~s-g~~l~tL~gH~------------~~V---~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
. -+|+|||+.. ..++.++.-|. ..| .-+.|+- +...+++|++.+..-|+-.
T Consensus 300 y-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSg-d~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 300 Y-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSG-DDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred c-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecC-Ccccccccccccceeeecc
Confidence 4 5899999975 34666665442 222 3456776 4456668888877777653
No 323
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=3.4e-07 Score=108.89 Aligned_cols=290 Identities=16% Similarity=0.211 Sum_probs=185.0
Q ss_pred EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC-------CCceEEEeCCCCCeEEEEecCCCCcceEEEEecC
Q 048801 278 LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD-------GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD 350 (1715)
Q Consensus 278 l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t-------g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~ 350 (1715)
+..+.||...|..++--.+.+-+++++.|++|++|.+.. ..+..+++.|..+|.++.|..+.. +++ +.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr---~i~--Sc 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR---SIA--SC 802 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc---eee--ec
Confidence 456789999999998877888899999999999999853 246677889999999999999876 444 45
Q ss_pred CCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEe-cCCCeEEEEeCCCC
Q 048801 351 DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTG-SSDTFARVWSACKS 429 (1715)
Q Consensus 351 DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatG-s~DG~IrVWDl~t~ 429 (1715)
||.|.+||.--+..+..+.... ..+....|.|+. +-+..++++| +...+|+++|.+..
T Consensus 803 D~giHlWDPFigr~Laq~~dap--------------------k~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsc 861 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAP--------------------KEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSC 861 (1034)
T ss_pred cCcceeecccccchhHhhhcCc--------------------ccCCCceeEecc-cCcchheeeeccchhhheeeecccc
Confidence 8899999987666544321110 001122344442 1133444444 67889999999865
Q ss_pred CccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccC
Q 048801 430 SVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH 509 (1715)
Q Consensus 430 ~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~ 509 (1715)
.... .-.+....+.+.-+.+++..+.| +.++.+-..|.|.+.|.+++..+
T Consensus 862 e~~~----E~kVcna~~Pna~~R~iaVa~~G--------------------------N~lAa~LSnGci~~LDaR~G~vI 911 (1034)
T KOG4190|consen 862 EWTC----ELKVCNAPGPNALTRAIAVADKG--------------------------NKLAAALSNGCIAILDARNGKVI 911 (1034)
T ss_pred ccee----eEEeccCCCCchheeEEEeccCc--------------------------chhhHHhcCCcEEEEecCCCcee
Confidence 3210 01122235566778899998876 78999999999999999987643
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEE-EECCCCceEEEEecCCC
Q 048801 510 GKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICV-WNAVDGSLVHSLTGHSA 588 (1715)
Q Consensus 510 ~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~I-WDl~sg~~l~tL~gH~~ 588 (1715)
. .|... ......++ .|..+.|+....|.++.| |...+|......+....
T Consensus 912 N---swrpm--------------------------ecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppe 961 (1034)
T KOG4190|consen 912 N---SWRPM--------------------------ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPE 961 (1034)
T ss_pred c---cCCcc--------------------------cchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCc
Confidence 2 23211 01111111 345567777777888888 88877776666654443
Q ss_pred CeEEEEEccCCCcEEEEEeCCCcEEEEECCC----CceEEEEE--cccceEEEEEEcCCCCEEEEEeCCCeEEE
Q 048801 589 SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE----GTPIRIYE--IGRFKLVDGKFSPDGTSIVLSDDVGQIYL 656 (1715)
Q Consensus 589 ~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t----gk~l~tl~--~h~~~V~svafSPDG~~LAsgs~DG~I~I 656 (1715)
+..-+. + -+--++++.....+.||--.. ...+..+. ...+..++++.-|-..-+.+|...|.|.+
T Consensus 962 pahflq-s--vgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 962 PAHFLQ-S--VGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred chhhhh-c--cCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 322221 1 122445666666677774211 11111221 23455778888887777888888888765
No 324
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=98.54 E-value=3e-07 Score=92.31 Aligned_cols=97 Identities=14% Similarity=0.227 Sum_probs=74.6
Q ss_pred HHHHhhhHHHhhhhccccchhhhhHHHHHHhh--hccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhc
Q 048801 1613 RDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQ--KLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESY 1690 (1715)
Q Consensus 1613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~ 1690 (1715)
++.|...+..+.. ..+++-..+..+.-.+. +.+|...+.-|+++.+||+||++.-|++++.++.|+..|+.||.+|
T Consensus 5 q~~l~~l~~~V~~--~~D~~Gr~~s~~f~~LP~~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~y 82 (110)
T cd05526 5 QELLATLFVSVMN--HQDEEGRCYSDSLAELPELAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERARRL 82 (110)
T ss_pred HHHHHHHHHHHHh--ccCCCCCCchHHHHHCCCcccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHHh
Confidence 4444444444433 22233333444443333 4556678889999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHH
Q 048801 1691 FIKNAALSAKVERLRDWFNRT 1711 (1715)
Q Consensus 1691 n~~~~~i~~~~~~l~~~~~~~ 1711 (1715)
|.+++.|-..|..|..+|.++
T Consensus 83 N~~~S~iy~dA~eLq~~f~~~ 103 (110)
T cd05526 83 SRTDSEIYEDAVELQQFFIKI 103 (110)
T ss_pred CcccCHHHHHHHHHHHHHHHH
Confidence 999999999999999999865
No 325
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.52 E-value=9.4e-05 Score=86.89 Aligned_cols=279 Identities=12% Similarity=0.071 Sum_probs=169.1
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCC--CcEEE--EecCCCCCeEEEEECCCCCEEEEEeC-CCeeE
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSD---DRLVKIWSMET--AFCLA--SCRGHEGDITDLAVSSNNTLVASASN-DFVIR 310 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~---DGtIrIWDl~t--gk~l~--tL~gHs~~VtsLafSpDg~lLASGS~-DGtIr 310 (1715)
+-.+.+..+-|+|+|++++|.++.. +|.|..|.++. |++.. ....-..+-+.++++++|++|+++.. .|.|.
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 3456778899999999999998854 57888887764 54432 22222334488999999999999875 58999
Q ss_pred EEECCC-CCceE--EEeCCCCC----------eEEEEecCCCCcceEEEEec-CCCcEEEEecCCCCCcceecCCCCCCC
Q 048801 311 VWRLPD-GLPIS--VLRGHTGA----------VTAIAFSPRPSAIYQLLSSS-DDGTCRIWDARYSQYSPRIYLPKPPDA 376 (1715)
Q Consensus 311 VWDl~t-g~~l~--~L~gH~~~----------VtsLafSPdg~~~~~LaSgS-~DGtVrIWDl~tg~~l~~i~~~~~~~~ 376 (1715)
|+-+.. |.+.. .+..|.+. +.+..|.|+++ +|++.. .--.|.+|++..|.+.......
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~---~l~v~DLG~Dri~~y~~~dg~L~~~~~~~----- 186 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR---YLVVPDLGTDRIFLYDLDDGKLTPADPAE----- 186 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC---EEEEeecCCceEEEEEcccCccccccccc-----
Confidence 999865 53322 22235555 88999999998 555543 2345899999877654322110
Q ss_pred ccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-CCeEEEEeCCCCCccCCCCCceeeeeecC---CCCCee
Q 048801 377 ITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-DTFARVWSACKSSVEDSEQPIHELDVLSG---HENDVN 452 (1715)
Q Consensus 377 i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-DG~IrVWDl~t~~~~~~~~~~~~l~~l~g---H~~~V~ 452 (1715)
...+..-+.|+|+|++++..+.++ +++|.+|....... .....+.+..+.. -.....
T Consensus 187 -----------------v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g--~~~~lQ~i~tlP~dF~g~~~~a 247 (346)
T COG2706 187 -----------------VKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVG--KFEELQTIDTLPEDFTGTNWAA 247 (346)
T ss_pred -----------------cCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCc--eEEEeeeeccCccccCCCCcee
Confidence 022445688999999998766654 89999999876310 0011111111111 233556
Q ss_pred EEEEccCcccccccccccccccccccccCCcccCceEEEEc-CCCeEEEEecCCCccCcccccccccccccCCCCCCCCC
Q 048801 453 YVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQ 531 (1715)
Q Consensus 453 sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~ 531 (1715)
.|..+++| .+|.++. ....|.+|.+...... +
T Consensus 248 aIhis~dG--------------------------rFLYasNRg~dsI~~f~V~~~~g~--L------------------- 280 (346)
T COG2706 248 AIHISPDG--------------------------RFLYASNRGHDSIAVFSVDPDGGK--L------------------- 280 (346)
T ss_pred EEEECCCC--------------------------CEEEEecCCCCeEEEEEEcCCCCE--E-------------------
Confidence 77778876 4444433 2335666655431100 0
Q ss_pred CCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC-eEEEEEC--CCCceEEEEe-cCCCCeEEEEE
Q 048801 532 PPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWNA--VDGSLVHSLT-GHSASSYVLDV 595 (1715)
Q Consensus 532 ~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG-tI~IWDl--~sg~~l~tL~-gH~~~V~sLaf 595 (1715)
........+...-+.+.|++.|++|+++..++ .|.||.. .+|++..... .......||.|
T Consensus 281 ----~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f 344 (346)
T COG2706 281 ----ELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKF 344 (346)
T ss_pred ----EEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEE
Confidence 00111112233367789999999999988765 5777755 4565544333 23333455555
No 326
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=0.00023 Score=83.65 Aligned_cols=274 Identities=11% Similarity=0.130 Sum_probs=167.8
Q ss_pred CCeeEEEECCCC--Cc-eEEEeCCCCCeEEEEecCCCCcceEEEEe---cCCCcEEEEecCC--CCCcceecCCCCCCCc
Q 048801 306 DFVIRVWRLPDG--LP-ISVLRGHTGAVTAIAFSPRPSAIYQLLSS---SDDGTCRIWDARY--SQYSPRIYLPKPPDAI 377 (1715)
Q Consensus 306 DGtIrVWDl~tg--~~-l~~L~gH~~~VtsLafSPdg~~~~~LaSg---S~DGtVrIWDl~t--g~~l~~i~~~~~~~~i 377 (1715)
+.-|++|++.+. +. ...+-.+.+.++-|+|+|+.+ +|.++ +.+|.|..|.+.. |.+...-..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~---~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~------- 84 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQR---HLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ------- 84 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCC---EEEEEEecCCcCcEEEEEEcCCCCeEEEeecc-------
Confidence 567999998742 21 112234677889999999998 44444 4468888887764 432111000
Q ss_pred cCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-CCeEEEEeCCC-CCccCCCCCceeeeeecCCCCC-----
Q 048801 378 TGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-DTFARVWSACK-SSVEDSEQPIHELDVLSGHEND----- 450 (1715)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-DG~IrVWDl~t-~~~~~~~~~~~~l~~l~gH~~~----- 450 (1715)
......-+.++++++|++|+++.. .|.|.++-+.. +.+ ........|.+.
T Consensus 85 ----------------~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l-------~~~v~~~~h~g~~p~~r 141 (346)
T COG2706 85 ----------------TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL-------QPVVQVVKHTGSGPHER 141 (346)
T ss_pred ----------------ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcc-------ccceeeeecCCCCCCcc
Confidence 011222378999999999888764 58899998865 322 111112223333
Q ss_pred -----eeEEEEccCcccccccccccccccccccccCCcccCceEEEEcC-CCeEEEEecCCCccCcccccccccccccCC
Q 048801 451 -----VNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR-DGSAIIWIPRSRRSHGKVGRWTRAYHLKVP 524 (1715)
Q Consensus 451 -----V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~-DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~ 524 (1715)
+.+..|.|++ ++|+++.- --.|.+|++..+......
T Consensus 142 Q~~~h~H~a~~tP~~--------------------------~~l~v~DLG~Dri~~y~~~dg~L~~~~------------ 183 (346)
T COG2706 142 QESPHVHSANFTPDG--------------------------RYLVVPDLGTDRIFLYDLDDGKLTPAD------------ 183 (346)
T ss_pred ccCCccceeeeCCCC--------------------------CEEEEeecCCceEEEEEcccCcccccc------------
Confidence 6677788875 56666542 346888888754321100
Q ss_pred CCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCC-ceEEEEec---------CCCCeEEE
Q 048801 525 PPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDG-SLVHSLTG---------HSASSYVL 593 (1715)
Q Consensus 525 ~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg-~~l~tL~g---------H~~~V~sL 593 (1715)
........+-+.|+|+|++++..+.+ -+++|.+|..... ..+..++. ......+|
T Consensus 184 --------------~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI 249 (346)
T COG2706 184 --------------PAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI 249 (346)
T ss_pred --------------ccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence 00113345678899999999987655 4889999998773 22333321 13356778
Q ss_pred EEccCCCcEEEEEe-CCCcEEEEECCCC-ceEEEEE---cccceEEEEEEcCCCCEEEEEeCC-CeEEEEECC--CCccc
Q 048801 594 DVHPFNPRIAMSAG-YDGRTIVWDIWEG-TPIRIYE---IGRFKLVDGKFSPDGTSIVLSDDV-GQIYLLNTG--QGESQ 665 (1715)
Q Consensus 594 afSP~dg~lLaSgs-~DGtI~VWDl~tg-k~l~tl~---~h~~~V~svafSPDG~~LAsgs~D-G~I~IWdl~--tGe~~ 665 (1715)
..++ ++++|.++. ....|.++.+... ..+.... .+...-.+..|+++|++|+++..+ ..|.+|... +|++.
T Consensus 250 his~-dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 250 HISP-DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred EECC-CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 8999 677776653 3347888877542 2233222 222235688999999999988664 468888664 55443
No 327
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.45 E-value=3.2e-05 Score=87.94 Aligned_cols=269 Identities=14% Similarity=0.123 Sum_probs=171.2
Q ss_pred CCcEEEEeCCCCcEEE--Ee-cCCCCCeEEEEECC---CCC-EEEEEeCCCeeEEEECCCCCceEEEeCCC------CCe
Q 048801 264 DRLVKIWSMETAFCLA--SC-RGHEGDITDLAVSS---NNT-LVASASNDFVIRVWRLPDGLPISVLRGHT------GAV 330 (1715)
Q Consensus 264 DGtIrIWDl~tgk~l~--tL-~gHs~~VtsLafSp---Dg~-lLASGS~DGtIrVWDl~tg~~l~~L~gH~------~~V 330 (1715)
-|.+.+|++...+.+. ++ ..-+..+..|.|.. +|. .|+-+..+|.|.++..........|++-. ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4678889887665443 11 22345677777763 444 56667778999999876544444444322 124
Q ss_pred EEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CC
Q 048801 331 TAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NG 409 (1715)
Q Consensus 331 tsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG 409 (1715)
.++.|++.+. .++++-.+|.+.+-+.....+. .......|..+++.+.|+- +.
T Consensus 125 lslD~~~~~~---~i~vs~s~G~~~~v~~t~~~le-----------------------~vq~wk~He~E~Wta~f~~~~p 178 (339)
T KOG0280|consen 125 LSLDISTSGT---KIFVSDSRGSISGVYETEMVLE-----------------------KVQTWKVHEFEAWTAKFSDKEP 178 (339)
T ss_pred eEEEeeccCc---eEEEEcCCCcEEEEecceeeee-----------------------ecccccccceeeeeeecccCCC
Confidence 5778888877 6888888888885554333211 1123456777888899976 44
Q ss_pred CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceE
Q 048801 410 TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNI 489 (1715)
Q Consensus 410 ~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~L 489 (1715)
+++.+|+.|+.+..||++..+ ........-|...|.+|.-+|.. +.+|
T Consensus 179 nlvytGgDD~~l~~~D~R~p~-------~~i~~n~kvH~~GV~SI~ss~~~-------------------------~~~I 226 (339)
T KOG0280|consen 179 NLVYTGGDDGSLSCWDIRIPK-------TFIWHNSKVHTSGVVSIYSSPPK-------------------------PTYI 226 (339)
T ss_pred ceEEecCCCceEEEEEecCCc-------ceeeecceeeecceEEEecCCCC-------------------------CceE
Confidence 789999999999999998421 11123355688889998887743 4799
Q ss_pred EEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC--CCEEEEEecCC
Q 048801 490 VTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD--NRFVLAAIMDC 567 (1715)
Q Consensus 490 aSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD--G~~LaTgs~DG 567 (1715)
+||+.|-.|++||.++-. .++.. ....++|..+.++|. +..|+++-.+|
T Consensus 227 ~TGsYDe~i~~~DtRnm~----------------------------kPl~~-~~v~GGVWRi~~~p~~~~~lL~~CMh~G 277 (339)
T KOG0280|consen 227 ATGSYDECIRVLDTRNMG----------------------------KPLFK-AKVGGGVWRIKHHPEIFHRLLAACMHNG 277 (339)
T ss_pred EEeccccceeeeehhccc----------------------------Ccccc-CccccceEEEEecchhhhHHHHHHHhcC
Confidence 999999999999998511 01100 012378999999884 33444444443
Q ss_pred eEEEEECCCC--c---eEEEEecCCCCeEEEEEccCCCcEEEEEe-CCCcEE-EEECCCCc
Q 048801 568 RICVWNAVDG--S---LVHSLTGHSASSYVLDVHPFNPRIAMSAG-YDGRTI-VWDIWEGT 621 (1715)
Q Consensus 568 tI~IWDl~sg--~---~l~tL~gH~~~V~sLafSP~dg~lLaSgs-~DGtI~-VWDl~tgk 621 (1715)
.+|-+...+ + .+...+.|.+-++.-.|.. ...+|+|++ +|..|+ +|-..++.
T Consensus 278 -~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~-~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 278 -AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDS-KDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred -ceEEEecccccchheeeeccccccceeecccccc-ccceeeeeeccccceeeeeeeccCC
Confidence 555555443 2 3445567877777777744 234677754 677754 77654543
No 328
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.45 E-value=0.0001 Score=88.00 Aligned_cols=145 Identities=11% Similarity=0.129 Sum_probs=114.0
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCC-eeEEEECCCCCceEEEeCCCCCeEE
Q 048801 254 SGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDF-VIRVWRLPDGLPISVLRGHTGAVTA 332 (1715)
Q Consensus 254 DG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DG-tIrVWDl~tg~~l~~L~gH~~~Vts 332 (1715)
+|.+++..|. |...|.+...+-.++ -+|.+.|.-..+..++.-++.|..|| .+-|+|..+++ +..+...-+.|.+
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEA 406 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEE
Confidence 5778888875 677777766665554 35777899999998988999999999 89999987765 4556667789999
Q ss_pred EEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeE
Q 048801 333 IAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVF 412 (1715)
Q Consensus 333 LafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~L 412 (1715)
+..+++|+ .++.+.....|.+.|+.++..... .....+-|+.++|+|++++|
T Consensus 407 v~vs~dGK---~~vvaNdr~el~vididngnv~~i-------------------------dkS~~~lItdf~~~~nsr~i 458 (668)
T COG4946 407 VKVSPDGK---KVVVANDRFELWVIDIDNGNVRLI-------------------------DKSEYGLITDFDWHPNSRWI 458 (668)
T ss_pred EEEcCCCc---EEEEEcCceEEEEEEecCCCeeEe-------------------------cccccceeEEEEEcCCceeE
Confidence 99999998 788888888999999988763211 11123459999999999999
Q ss_pred EEecCCC----eEEEEeCCCCC
Q 048801 413 VTGSSDT----FARVWSACKSS 430 (1715)
Q Consensus 413 atGs~DG----~IrVWDl~t~~ 430 (1715)
|-+--+| .|++||+.+++
T Consensus 459 AYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 459 AYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred EEecCcceeeeeEEEEecCCCe
Confidence 9887665 58999998764
No 329
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.45 E-value=1.6e-06 Score=101.97 Aligned_cols=88 Identities=19% Similarity=0.234 Sum_probs=76.3
Q ss_pred cccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEE-ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 538 RQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSL-TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 538 ~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL-~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
...+.+|-.-++.++|+||+++|+++..|..|+|-.....-.+..+ -||..-|..++.-+ ++.|++||.|++|++||
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRLWD 221 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEEEEe
Confidence 3456788889999999999999999999999999888766666655 58999999999965 56789999999999999
Q ss_pred CCCCceEEEEE
Q 048801 617 IWEGTPIRIYE 627 (1715)
Q Consensus 617 l~tgk~l~tl~ 627 (1715)
+.+|+++.++.
T Consensus 222 ~~sgk~L~t~d 232 (390)
T KOG3914|consen 222 ITSGKLLDTCD 232 (390)
T ss_pred cccCCcccccc
Confidence 99999997775
No 330
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.44 E-value=1.3e-06 Score=107.63 Aligned_cols=291 Identities=16% Similarity=0.238 Sum_probs=187.8
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeeEEEECCC-CCceEEEeCCC--CCeEEEEecCCCCcceEEEEecCCCcEEEEecCC
Q 048801 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPD-GLPISVLRGHT--GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY 361 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~DGtIrVWDl~t-g~~l~~L~gH~--~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~t 361 (1715)
.+++.++.++|.|+-+|.++.-|.+ +-|+.. +.+.+-|. |. -.|-.+.|+|.....+.+++.+. ..-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ 100 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSN-QKAIIWNLAK 100 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCc-chhhhhhhhc
Confidence 4577889999999999999887754 455543 45555444 32 34677889987765545555544 4455788753
Q ss_pred CCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCcee
Q 048801 362 SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHE 440 (1715)
Q Consensus 362 g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~ 440 (1715)
.. .........+|...|+.+.|++.. ..+++++.|..+..||++.. ..+
T Consensus 101 ss----------------------~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp--------~~p 150 (1081)
T KOG0309|consen 101 SS----------------------SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP--------HRP 150 (1081)
T ss_pred CC----------------------ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC--------Ccc
Confidence 32 111122234567889999999865 68899999999999999864 233
Q ss_pred eeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccccccc
Q 048801 441 LDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYH 520 (1715)
Q Consensus 441 l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~ 520 (1715)
+.....-......|+|+-.. ..+.+.+....|.+||++-+.
T Consensus 151 ~ys~~~w~s~asqVkwnyk~--------------------------p~vlasshg~~i~vwd~r~gs------------- 191 (1081)
T KOG0309|consen 151 FYSTSSWRSAASQVKWNYKD--------------------------PNVLASSHGNDIFVWDLRKGS------------- 191 (1081)
T ss_pred eeeeecccccCceeeecccC--------------------------cchhhhccCCceEEEeccCCC-------------
Confidence 44444334445566676432 345556677889999998532
Q ss_pred ccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CCCEEEEEecCCeEEEEECCCCceEE-EEecCCCCeEEEEEccC
Q 048801 521 LKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAVDGSLVH-SLTGHSASSYVLDVHPF 598 (1715)
Q Consensus 521 l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~LaTgs~DGtI~IWDl~sg~~l~-tL~gH~~~V~sLafSP~ 598 (1715)
.++..+.+|...|+.+.|.. ....+.+.+.|++|+.||........ .......+|+--.+-|+
T Consensus 192 ---------------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pf 256 (1081)
T KOG0309|consen 192 ---------------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPF 256 (1081)
T ss_pred ---------------cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccccc
Confidence 33445556777788887764 34467888999999999986543221 12223445555556665
Q ss_pred CCcEEEEEe----------CCCcEEEEECCC-CceEEEEEcccceEEEEEEcCCCC----------EEEEEeCCCeEEEE
Q 048801 599 NPRIAMSAG----------YDGRTIVWDIWE-GTPIRIYEIGRFKLVDGKFSPDGT----------SIVLSDDVGQIYLL 657 (1715)
Q Consensus 599 dg~lLaSgs----------~DGtI~VWDl~t-gk~l~tl~~h~~~V~svafSPDG~----------~LAsgs~DG~I~IW 657 (1715)
+..+++--. -+.....|++.+ .+++.+|.+|...|....|-..+. .|++-+.|..+++|
T Consensus 257 g~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 257 GEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred CceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 443222111 122233455544 378999999998887776654332 68999999999999
Q ss_pred ECCCC
Q 048801 658 NTGQG 662 (1715)
Q Consensus 658 dl~tG 662 (1715)
-+++.
T Consensus 337 pI~~~ 341 (1081)
T KOG0309|consen 337 PIDSQ 341 (1081)
T ss_pred eccHH
Confidence 98754
No 331
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.41 E-value=4.9e-05 Score=86.97 Aligned_cols=151 Identities=20% Similarity=0.247 Sum_probs=95.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCC--cEEEEe---cCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEE
Q 048801 248 CAIFDRSGRFVITGSDDRLVKIWSMETA--FCLASC---RGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISV 322 (1715)
Q Consensus 248 ~VafSpDG~~LaTGS~DGtIrIWDl~tg--k~l~tL---~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~ 322 (1715)
.++.+.+|++||.- .|..|.|-...+. ..+... +.....=.-++||||+.+||.+...|+|+|+|+.. ..+..
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFV 79 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEE
Confidence 36778899998876 5678888766543 222333 33334567899999999999999999999999864 44444
Q ss_pred EeC-------CCCCeEEEEecCCCC---cceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCC
Q 048801 323 LRG-------HTGAVTAIAFSPRPS---AIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSS 392 (1715)
Q Consensus 323 L~g-------H~~~VtsLafSPdg~---~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~ 392 (1715)
+.. -...|..|.|.+... ....|++-..+|.++-|-+..+.... +. .......
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~-y~----------------e~hsfsf 142 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQG-YQ----------------ENHSFSF 142 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCc-ce----------------eeEEEEe
Confidence 432 235677777766431 12356666777878777653321100 00 0000111
Q ss_pred CCCCCcceeEEEEccCCCeEEEecC
Q 048801 393 NGLQSHQILCCAYNANGTVFVTGSS 417 (1715)
Q Consensus 393 ~~~h~~~VtslafSpdG~~LatGs~ 417 (1715)
.......|.++.|+|..++|++|+.
T Consensus 143 ~~~yp~Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 143 SSHYPHGINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred cccCCCceeEEEEcCCCCEEEEecc
Confidence 1223667999999999998888764
No 332
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.39 E-value=4.2e-07 Score=113.29 Aligned_cols=166 Identities=14% Similarity=0.218 Sum_probs=125.1
Q ss_pred ccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC-CC-e
Q 048801 231 QKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN-DF-V 308 (1715)
Q Consensus 231 ~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~-DG-t 308 (1715)
..++.+++|+.|....+|++|+-+.++|+.|+..|.|+++++.+|.......+|..+|+.+.-+.||.++++.+. .. .
T Consensus 1089 SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence 456788899999999999999999999999999999999999999999999999999999999999987776544 32 5
Q ss_pred eEEEECC-CCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 309 IRVWRLP-DGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 309 IrVWDl~-tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
..+|++. ++.+.+.+. .-.++.|+.... .-+.|+......+||+.++..+.++..+..
T Consensus 1169 saLW~~~s~~~~~Hsf~----ed~~vkFsn~~q---~r~~gt~~d~a~~YDvqT~~~l~tylt~~~-------------- 1227 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFD----EDKAVKFSNSLQ---FRALGTEADDALLYDVQTCSPLQTYLTDTV-------------- 1227 (1516)
T ss_pred HHHhccccccCcccccc----ccceeehhhhHH---HHHhcccccceEEEecccCcHHHHhcCcch--------------
Confidence 7899985 355555554 346788887643 223444445688999999876655322111
Q ss_pred CCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCC
Q 048801 388 GPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~ 429 (1715)
.....-.++.|+|+..+++ .||. +||++..
T Consensus 1228 -------~~~y~~n~a~FsP~D~LIl---ndGv--LWDvR~~ 1257 (1516)
T KOG1832|consen 1228 -------TSSYSNNLAHFSPCDTLIL---NDGV--LWDVRIP 1257 (1516)
T ss_pred -------hhhhhccccccCCCcceEe---eCce--eeeeccH
Confidence 0112236788999988877 4553 7998753
No 333
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.35 E-value=0.00018 Score=89.71 Aligned_cols=274 Identities=11% Similarity=0.061 Sum_probs=156.5
Q ss_pred CCEEEEEeCCCeeEEEECCCCCceEEEeCCCC----------Ce-EEEEecCCCCcceEEEEecCCCcEEEEecCCCCCc
Q 048801 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTG----------AV-TAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS 365 (1715)
Q Consensus 297 g~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~----------~V-tsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l 365 (1715)
+..|++++.+|.|.-+|..+|+.+........ .+ ..+... +. .++.++.+|.|..+|..+|+.+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~--~~---~v~v~~~~g~l~ald~~tG~~~ 143 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA--GG---KVYIGSEKGQVYALNAEDGEVA 143 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE--CC---EEEEEcCCCEEEEEECCCCCCc
Confidence 55777777888888889888887776542210 00 011221 22 5777888999999999999877
Q ss_pred ceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeE-EEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee
Q 048801 366 PRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILC-CAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL 444 (1715)
Q Consensus 366 ~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vts-lafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l 444 (1715)
.+...... +.+ ..+ .+..+++++.+|.|..+|..+++.. ...
T Consensus 144 W~~~~~~~--------------------------~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~---------W~~ 186 (394)
T PRK11138 144 WQTKVAGE--------------------------ALSRPVV--SDGLVLVHTSNGMLQALNESDGAVK---------WTV 186 (394)
T ss_pred ccccCCCc--------------------------eecCCEE--ECCEEEEECCCCEEEEEEccCCCEe---------eee
Confidence 65543211 111 011 1335666777899999999887542 111
Q ss_pred cCCCCCeeEEE--EccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccccccccc
Q 048801 445 SGHENDVNYVQ--FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLK 522 (1715)
Q Consensus 445 ~gH~~~V~sLa--fspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~ 522 (1715)
.... +...+. -+|. .....++.++.+|.+..+|..+++.. |.....
T Consensus 187 ~~~~-~~~~~~~~~sP~------------------------v~~~~v~~~~~~g~v~a~d~~~G~~~-----W~~~~~-- 234 (394)
T PRK11138 187 NLDV-PSLTLRGESAPA------------------------TAFGGAIVGGDNGRVSAVLMEQGQLI-----WQQRIS-- 234 (394)
T ss_pred cCCC-CcccccCCCCCE------------------------EECCEEEEEcCCCEEEEEEccCChhh-----heeccc--
Confidence 1110 000000 0010 01245777888999999998887632 221100
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC--CCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCC
Q 048801 523 VPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL--DNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP 600 (1715)
Q Consensus 523 ~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP--DG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg 600 (1715)
.+. .......+ ..+..+| .+..|++++.+|.+..+|+.+|+.+....-. ....+.. .++
T Consensus 235 ~~~--------~~~~~~~~-------~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~--~~~ 295 (394)
T PRK11138 235 QPT--------GATEIDRL-------VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAV--DGG 295 (394)
T ss_pred cCC--------Cccchhcc-------cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEE--ECC
Confidence 000 00000000 0011111 2456777778999999999999987765421 1112222 133
Q ss_pred cEEEEEeCCCcEEEEECCCCceEEEEEcccc-eEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 048801 601 RIAMSAGYDGRTIVWDIWEGTPIRIYEIGRF-KLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 601 ~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~-~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k 666 (1715)
.|+.++.+|.|..+|..+|+.+........ ......+ .+..|++++.+|.|+++|..+|+.+-
T Consensus 296 -~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 296 -RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 445567899999999999988765432111 1122222 25678889999999999999998663
No 334
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.32 E-value=3.3e-06 Score=95.62 Aligned_cols=236 Identities=17% Similarity=0.212 Sum_probs=149.2
Q ss_pred CcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC------------CeeEEEEccCccccc
Q 048801 397 SHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN------------DVNYVQFSGCAVASR 464 (1715)
Q Consensus 397 ~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~------------~V~sLafspdg~as~ 464 (1715)
...|+++.|...|.+|++|...|.|.+|.-..... -..+.+..+.+|.. .|+.+.|..++
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~----ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t---- 97 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG----CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT---- 97 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccc----cchhhhhhhcccccchhhhhhccHHHHhhheeeecCC----
Confidence 45599999999999999999999999998765321 11122334455542 34555554433
Q ss_pred ccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcc-cccccccccccCCCCCCCCCCC----------
Q 048801 465 SAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGK-VGRWTRAYHLKVPPPPLPPQPP---------- 533 (1715)
Q Consensus 465 ~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~-~~~~~~~~~l~~~~~~~~~~~~---------- 533 (1715)
....++..+.|.+|++|.+........ -......++.....+.......
T Consensus 98 --------------------~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~ 157 (460)
T COG5170 98 --------------------GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDE 157 (460)
T ss_pred --------------------CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccce
Confidence 135777888999999999876432110 0111122222222111111000
Q ss_pred --CCCCcc-cccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCce---EEEEecCC-----CCeEEEEEccCCCcE
Q 048801 534 --RGGPRQ-RLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL---VHSLTGHS-----ASSYVLDVHPFNPRI 602 (1715)
Q Consensus 534 --~g~~~~-~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~---l~tL~gH~-----~~V~sLafSP~dg~l 602 (1715)
...+.. ....|..-|+++.|..|...++++ .|-.|.+|++.-... +..++.|. ..|++..|||....+
T Consensus 158 iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~ 236 (460)
T COG5170 158 IIAAKPCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNV 236 (460)
T ss_pred EEEeccceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcce
Confidence 011111 124677789999999999888865 577899999865432 22334453 457888999977777
Q ss_pred EEEEeCCCcEEEEECCCCc------eEE----------EEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 603 AMSAGYDGRTIVWDIWEGT------PIR----------IYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 603 LaSgs~DGtI~VWDl~tgk------~l~----------tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
+.-.+..|.|++-|++... .+. -+......|.++.|++.|++|++-+. -+|.|||+...
T Consensus 237 fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 237 FMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred EEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 7778889999999987321 111 11112346788999999999998776 68999998654
No 335
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.30 E-value=4e-05 Score=86.03 Aligned_cols=198 Identities=13% Similarity=0.082 Sum_probs=135.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCcE-EEEecCCCCCeEEEEECCC-CCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEE
Q 048801 256 RFVITGSDDRLVKIWSMETAFC-LASCRGHEGDITDLAVSSN-NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAI 333 (1715)
Q Consensus 256 ~~LaTGS~DGtIrIWDl~tgk~-l~tL~gHs~~VtsLafSpD-g~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsL 333 (1715)
.+||.||.-|...+|...+... +..+..|...|+-+.-..+ ..-+..++.|.++++.++.-+..-..+.-..-.+.++
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL 164 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence 4899999999999999986543 3444455554443322222 2346667888899988886554333332222338899
Q ss_pred EecCCCCcceEEEEecCCCcEEEEecCCCCC-cceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeE
Q 048801 334 AFSPRPSAIYQLLSSSDDGTCRIWDARYSQY-SPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVF 412 (1715)
Q Consensus 334 afSPdg~~~~~LaSgS~DGtVrIWDl~tg~~-l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~L 412 (1715)
++++++. .+++.+....|.+|.+..... +..++. ......-.+..|+.....+
T Consensus 165 ~~snd~~---~~~~Vgds~~Vf~y~id~~sey~~~~~~-----------------------a~t~D~gF~~S~s~~~~~F 218 (344)
T KOG4532|consen 165 HYSNDPS---WGSSVGDSRRVFRYAIDDESEYIENIYE-----------------------APTSDHGFYNSFSENDLQF 218 (344)
T ss_pred EEcCCCc---eEEEecCCCcceEEEeCCccceeeeeEe-----------------------cccCCCceeeeeccCcceE
Confidence 9999998 788889999999998865331 111111 1112334688999999999
Q ss_pred EEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEE
Q 048801 413 VTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTC 492 (1715)
Q Consensus 413 atGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSg 492 (1715)
|+++.||++.|||++...... ......-..|.+.+..+.|++.+. -++|+..
T Consensus 219 Av~~Qdg~~~I~DVR~~~tpm----~~~sstrp~hnGa~R~c~Fsl~g~------------------------lDLLf~s 270 (344)
T KOG4532|consen 219 AVVFQDGTCAIYDVRNMATPM----AEISSTRPHHNGAFRVCRFSLYGL------------------------LDLLFIS 270 (344)
T ss_pred EEEecCCcEEEEEecccccch----hhhcccCCCCCCceEEEEecCCCc------------------------ceEEEEe
Confidence 999999999999998753211 111223345899999999998652 2677777
Q ss_pred cCCCeEEEEecCCCc
Q 048801 493 SRDGSAIIWIPRSRR 507 (1715)
Q Consensus 493 S~DGsIrIWDl~t~~ 507 (1715)
-.-+.+.+.|+++..
T Consensus 271 Ehfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 271 EHFSRVHVVDTRNYV 285 (344)
T ss_pred cCcceEEEEEcccCc
Confidence 778889999998755
No 336
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2.6e-05 Score=92.65 Aligned_cols=297 Identities=16% Similarity=0.149 Sum_probs=191.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC--C-CceEEEeCCCCCeEEEEecCCCCcceEEEEecC-CCcEEEEec
Q 048801 284 HEGDITDLAVSSNNTLVASASNDFVIRVWRLPD--G-LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD-DGTCRIWDA 359 (1715)
Q Consensus 284 Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t--g-~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~-DGtVrIWDl 359 (1715)
|...|+.+..+ -.+++.+++.||.++.|--.. | +.+..+..|-+.|.+++.+-++. ++.|.+. |..++++|+
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~---L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW---LFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce---eEeeccCcccceeEEEe
Confidence 77777776654 456999999999999997532 2 33455667889999999999986 6778777 999999998
Q ss_pred CCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC--CeEE-EecCCCeEEEEeCCCCCccCCCC
Q 048801 360 RYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG--TVFV-TGSSDTFARVWSACKSSVEDSEQ 436 (1715)
Q Consensus 360 ~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG--~~La-tGs~DG~IrVWDl~t~~~~~~~~ 436 (1715)
.+-.....+.+...+. ..++..++.. ..|+ ..-.+|.+.|+|-....+
T Consensus 84 En~DminmiKL~~lPg------------------------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~----- 134 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPG------------------------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC----- 134 (558)
T ss_pred eccchhhhcccccCCC------------------------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC-----
Confidence 7655443332221110 1111122221 1233 334578899999765422
Q ss_pred CceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccc
Q 048801 437 PIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWT 516 (1715)
Q Consensus 437 ~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~ 516 (1715)
.....-.-|..+|.++.+.+.+ +.+++....|.|..|.... .
T Consensus 135 --q~~~fkklH~sPV~~i~y~qa~--------------------------Ds~vSiD~~gmVEyWs~e~-~--------- 176 (558)
T KOG0882|consen 135 --QDGYFKKLHFSPVKKIRYNQAG--------------------------DSAVSIDISGMVEYWSAEG-P--------- 176 (558)
T ss_pred --ccceecccccCceEEEEeeccc--------------------------cceeeccccceeEeecCCC-c---------
Confidence 2234445689999999999876 7889999999999997762 0
Q ss_pred ccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe------------
Q 048801 517 RAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT------------ 584 (1715)
Q Consensus 517 ~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~------------ 584 (1715)
+..+............-+..+........++.|+|+|..+.+-+.|..|+++++.+|++++.+.
T Consensus 177 ----~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks 252 (558)
T KOG0882|consen 177 ----FQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKS 252 (558)
T ss_pred ----ccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccc
Confidence 0000000001111111222233445668899999999999999999999999999988665442
Q ss_pred --------------------cCCC-CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcc--------------
Q 048801 585 --------------------GHSA-SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIG-------------- 629 (1715)
Q Consensus 585 --------------------gH~~-~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h-------------- 629 (1715)
.|.. .-+.+.|.- .+.+|+-|+.=| |+|.++.++++++.+--.
T Consensus 253 ~y~l~~VelgRRmaverelek~~~~~~~~~~fde-s~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~ 330 (558)
T KOG0882|consen 253 PYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE-SGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRLSLYQGA 330 (558)
T ss_pred ccccceeehhhhhhHHhhHhhhcCcccceeEEcC-CCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhHHHHhhh
Confidence 1111 113345655 566777776555 899999999888876310
Q ss_pred ---cce-E-------EEEEEcCCCCEEEEEeCCCeEEEE
Q 048801 630 ---RFK-L-------VDGKFSPDGTSIVLSDDVGQIYLL 657 (1715)
Q Consensus 630 ---~~~-V-------~svafSPDG~~LAsgs~DG~I~IW 657 (1715)
+.. + -.+.+-+|-..++++-.-.++++|
T Consensus 331 ~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 331 QKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred hhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 000 0 012466777777788888888888
No 337
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.28 E-value=0.00031 Score=88.19 Aligned_cols=135 Identities=10% Similarity=-0.040 Sum_probs=81.9
Q ss_pred CcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCE-EEEEeCC---CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCC
Q 048801 265 RLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTL-VASASND---FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPS 340 (1715)
Q Consensus 265 GtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~l-LASGS~D---GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~ 340 (1715)
..|.+-|.+... .+.+.... .+....|+|||+. ++..+.+ ..|.++|+.+|+..... ...+.+....|+|++.
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCC
Confidence 345555554333 34343333 7888999999984 6654443 56899999888755443 3556677889999998
Q ss_pred cceEEEEecC--CCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-
Q 048801 341 AIYQLLSSSD--DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS- 417 (1715)
Q Consensus 341 ~~~~LaSgS~--DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~- 417 (1715)
. .+++.+. +..|.++|+.++... .+.. +........|+|||+.|+..+.
T Consensus 246 ~--la~~~~~~g~~~Iy~~dl~~g~~~-~LT~-------------------------~~~~d~~p~~SPDG~~I~F~Sdr 297 (419)
T PRK04043 246 K--LLLTMAPKGQPDIYLYDTNTKTLT-QITN-------------------------YPGIDVNGNFVEDDKRIVFVSDR 297 (419)
T ss_pred E--EEEEEccCCCcEEEEEECCCCcEE-Eccc-------------------------CCCccCccEECCCCCEEEEEECC
Confidence 4 3333333 456777787766422 1110 0111234579999987776653
Q ss_pred CC--eEEEEeCCCCC
Q 048801 418 DT--FARVWSACKSS 430 (1715)
Q Consensus 418 DG--~IrVWDl~t~~ 430 (1715)
.| .|.++++.+++
T Consensus 298 ~g~~~Iy~~dl~~g~ 312 (419)
T PRK04043 298 LGYPNIFMKKLNSGS 312 (419)
T ss_pred CCCceEEEEECCCCC
Confidence 23 57777776643
No 338
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.24 E-value=0.00036 Score=80.02 Aligned_cols=214 Identities=14% Similarity=0.128 Sum_probs=114.9
Q ss_pred cceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccc
Q 048801 398 HQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVP 477 (1715)
Q Consensus 398 ~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~ 477 (1715)
.+-+-++||||+.+||.+...|+|++||+....+. ...+.. .....-...|..+.|....
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~--~~~~d~~~Aiagl~Fl~~~----------------- 103 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAM--SFPGDLSDAIAGLIFLEYK----------------- 103 (282)
T ss_pred chheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCccc--ccCCccccceeeeEeeccc-----------------
Confidence 34678999999999999999999999999754321 111110 0011122355555565421
Q ss_pred cccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccc-cCCCCCeeEEEeCCC
Q 048801 478 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRL-LPTPRGVNMIVWSLD 556 (1715)
Q Consensus 478 ~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l-~~h~~~VtslafSPD 556 (1715)
....| ...|++...+|.++-|-+..+... ...... ...+ ...+.+|++++++|.
T Consensus 104 -~s~~w--s~ELlvi~Y~G~L~Sy~vs~gt~q----~y~e~h------------------sfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 104 -KSAQW--SYELLVINYRGQLRSYLVSVGTNQ----GYQENH------------------SFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred -ccccc--ceeEEEEeccceeeeEEEEcccCC----cceeeE------------------EEEecccCCCceeEEEEcCC
Confidence 00011 135666667777777765322100 000010 1111 224678999999999
Q ss_pred CCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEE-EEeCCC------cEEEEECCCCceEEEEEcc
Q 048801 557 NRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAM-SAGYDG------RTIVWDIWEGTPIRIYEIG 629 (1715)
Q Consensus 557 G~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLa-Sgs~DG------tI~VWDl~tgk~l~tl~~h 629 (1715)
.++|++|+.... .++. -.+....+++-..-.+.+.+.. +...|+ +..+|.+-+.+........
T Consensus 159 h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~ 228 (282)
T PF15492_consen 159 HRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQE 228 (282)
T ss_pred CCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccC
Confidence 998888764321 0000 0011112222222111222211 111121 1234444332222211224
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 048801 630 RFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 630 ~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k 666 (1715)
...|..|..||||+.||+...+|.|.+|++.+-..+.
T Consensus 229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~ 265 (282)
T PF15492_consen 229 QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQR 265 (282)
T ss_pred CCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhc
Confidence 5679999999999999999999999999998765443
No 339
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.24 E-value=0.00018 Score=80.88 Aligned_cols=231 Identities=10% Similarity=-0.040 Sum_probs=146.7
Q ss_pred CCCcEEEEeCCCCc--EEEEecCCCCCeEEEEECC-----CCCEEEEEeCCCeeEEEECCCCCc-eEEEeCCCCCeEEEE
Q 048801 263 DDRLVKIWSMETAF--CLASCRGHEGDITDLAVSS-----NNTLVASASNDFVIRVWRLPDGLP-ISVLRGHTGAVTAIA 334 (1715)
Q Consensus 263 ~DGtIrIWDl~tgk--~l~tL~gHs~~VtsLafSp-----Dg~lLASGS~DGtIrVWDl~tg~~-l~~L~gH~~~VtsLa 334 (1715)
....|-+|++-+.. .+... +.|.|.| .--+||.|+..|...+|...+... +.....|...|+-+.
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~ 122 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK 122 (344)
T ss_pred ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence 33456777765432 23333 2344544 335899999999999999986543 333444544444332
Q ss_pred ecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEE
Q 048801 335 FSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVT 414 (1715)
Q Consensus 335 fSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~Lat 414 (1715)
=.-+... -+..++.|.++++.++..+.....+..+ .-.+.+++++++++++++
T Consensus 123 r~cd~~~--~~~i~sndht~k~~~~~~~s~~~~~h~~-------------------------~~~~ns~~~snd~~~~~~ 175 (344)
T KOG4532|consen 123 RYCDLKF--PLNIASNDHTGKTMVVSGDSNKFAVHNQ-------------------------NLTQNSLHYSNDPSWGSS 175 (344)
T ss_pred hhccccc--ceeeccCCcceeEEEEecCcccceeecc-------------------------ccceeeeEEcCCCceEEE
Confidence 2222222 4677888999999888655432222111 112788999999999999
Q ss_pred ecCCCeEEEEeCCCCCccCCCCCceeee-eecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEc
Q 048801 415 GSSDTFARVWSACKSSVEDSEQPIHELD-VLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS 493 (1715)
Q Consensus 415 Gs~DG~IrVWDl~t~~~~~~~~~~~~l~-~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS 493 (1715)
.+....|..|.+..... .... .....++.-.+..|+... ..+|++.
T Consensus 176 Vgds~~Vf~y~id~~se-------y~~~~~~a~t~D~gF~~S~s~~~--------------------------~~FAv~~ 222 (344)
T KOG4532|consen 176 VGDSRRVFRYAIDDESE-------YIENIYEAPTSDHGFYNSFSEND--------------------------LQFAVVF 222 (344)
T ss_pred ecCCCcceEEEeCCccc-------eeeeeEecccCCCceeeeeccCc--------------------------ceEEEEe
Confidence 99999999998875321 1111 233334445566676653 6899999
Q ss_pred CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC--EEEEEecCCeEEE
Q 048801 494 RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR--FVLAAIMDCRICV 571 (1715)
Q Consensus 494 ~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~--~LaTgs~DGtI~I 571 (1715)
.||++.|||++...... . ........|.+.++.+.|++-|. +|+..-.-+.+.|
T Consensus 223 Qdg~~~I~DVR~~~tpm------------------~------~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv 278 (344)
T KOG4532|consen 223 QDGTCAIYDVRNMATPM------------------A------EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHV 278 (344)
T ss_pred cCCcEEEEEecccccch------------------h------hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEE
Confidence 99999999998632110 0 01112234788999999998664 4555555678999
Q ss_pred EECCCCceEEEEe
Q 048801 572 WNAVDGSLVHSLT 584 (1715)
Q Consensus 572 WDl~sg~~l~tL~ 584 (1715)
.|++++.-...+.
T Consensus 279 ~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 279 VDTRNYVNHQVIV 291 (344)
T ss_pred EEcccCceeeEEe
Confidence 9999987666553
No 340
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.23 E-value=1.7e-05 Score=88.60 Aligned_cols=197 Identities=14% Similarity=0.160 Sum_probs=119.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEE------------EEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCL------------ASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l------------~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
|+.+.|+-+ ..|+++..++.+......++.+. ..+..|.++-.+-+.+-.++.++++..||.+.+.+
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 556666543 36677766666666555444332 33334444444444444577899999999999999
Q ss_pred CCCCCc-eEEEeCCCCCeEEEEecCCCCcceEEEEecCCCc------EEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 314 LPDGLP-ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGT------CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 314 l~tg~~-l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGt------VrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
.+.-.. ...+..-...-.+.++...+. ++.++.=|+ .++|+++-....
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~----~i~s~~~g~~n~~d~~~a~~~~p~~t~--------------------- 172 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGN----SILSGGCGNWNAQDNFYANTLDPIKTL--------------------- 172 (319)
T ss_pred chHHHhhhhhcccccccccccceeeccc----EEecCCcceEeeccceeeecccccccc---------------------
Confidence 765211 111111111122233333332 233332222 334443311100
Q ss_pred CCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccc
Q 048801 387 NGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~ 465 (1715)
... ......|.+++-+|.. .++++|+.||.+-+||.+.. ..+...+..|...|+.+.|+|..
T Consensus 173 --~~~--~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~--------~~p~S~l~ahk~~i~eV~FHpk~----- 235 (319)
T KOG4714|consen 173 --IPS--KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV--------AMPVSLLKAHKAEIWEVHFHPKN----- 235 (319)
T ss_pred --ccc--ccccccchhhhCCcccccEEEEecCCCeEEEEEcccc--------cchHHHHHHhhhhhhheeccCCC-----
Confidence 000 0112238888888854 57788899999999999875 23466788999999999999965
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCC
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 505 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t 505 (1715)
+..|++++.||.+..||..+
T Consensus 236 --------------------p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 236 --------------------PEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred --------------------chheeEecCCCcEEEEcCCC
Confidence 58999999999999999875
No 341
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.21 E-value=2e-06 Score=107.47 Aligned_cols=217 Identities=17% Similarity=0.281 Sum_probs=146.6
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccc
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAF 471 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~ 471 (1715)
....+....+|++|+.+.++|++|+..|.|++|++.+|.. ......|...|+.+.-+-+|
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~---------e~s~ncH~SavT~vePs~dg----------- 1155 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM---------EESVNCHQSAVTLVEPSVDG----------- 1155 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc---------cccccccccccccccccCCc-----------
Confidence 3445567799999999999999999999999999998743 34567899999988877765
Q ss_pred cccccccccCCcccCceEEEEcCCC-eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeE
Q 048801 472 KEENVPKFKNSWFCHDNIVTCSRDG-SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNM 550 (1715)
Q Consensus 472 ~~~~~~~~~~s~~~~~~LaSgS~DG-sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vts 550 (1715)
...|.+.+... -..+|++.+. +++... -..-.+
T Consensus 1156 --------------s~~Ltsss~S~PlsaLW~~~s~----------------------------~~~~Hs----f~ed~~ 1189 (1516)
T KOG1832|consen 1156 --------------STQLTSSSSSSPLSALWDASST----------------------------GGPRHS----FDEDKA 1189 (1516)
T ss_pred --------------ceeeeeccccCchHHHhccccc----------------------------cCcccc----ccccce
Confidence 12333333333 4567877531 111111 123456
Q ss_pred EEeCCCCCEEEEEecCCeEEEEECCCCceEEEE-ec---CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEE
Q 048801 551 IVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSL-TG---HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY 626 (1715)
Q Consensus 551 lafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL-~g---H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl 626 (1715)
+.|+..-.+-+.|+....+.|||+.++..+.++ .+ ....-++..|+|.+. +++ .|| .+||++..+.++.|
T Consensus 1190 vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~-LIl---ndG--vLWDvR~~~aIh~F 1263 (1516)
T KOG1832|consen 1190 VKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT-LIL---NDG--VLWDVRIPEAIHRF 1263 (1516)
T ss_pred eehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc-eEe---eCc--eeeeeccHHHHhhh
Confidence 778776555566666678999999999887763 22 222336788999554 443 465 37999988888888
Q ss_pred EcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccccccceeecCCCccEEEcCCCCeee
Q 048801 627 EIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKYDQFFLGDYRPLIRDSLGNVLD 691 (1715)
Q Consensus 627 ~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~~~~~~~fs~D~r~L~~d~~g~vld 691 (1715)
.... --....|+|.|..++.-++ |||+.+-+.+...+. -|-..+.+.+.|.|+-
T Consensus 1264 D~ft-~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~-----Ldqc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1264 DQFT-DYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPS-----LDQCAVTFNSTGDVMY 1317 (1516)
T ss_pred hhhe-ecccccccCCCceEEeech-----hhhhHHHHHHhcCcc-----ccceEEEeccCccchh
Confidence 7433 2224589999999988765 899988766654441 2444566677777654
No 342
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.20 E-value=0.00035 Score=87.72 Aligned_cols=222 Identities=7% Similarity=0.005 Sum_probs=122.5
Q ss_pred eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec-CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 308 VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS-DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS-~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
.|.+-|.+ |...+.+... +.+....|+|+++...++.+-. .+..|.++|+.+++......
T Consensus 170 ~l~~~d~d-g~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~----------------- 230 (419)
T PRK04043 170 NIVLADYT-LTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS----------------- 230 (419)
T ss_pred eEEEECCC-CCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-----------------
Confidence 55555653 4434444433 3788999999997421222222 24678889998776322211
Q ss_pred CCCCCCCCCCCcceeEEEEccCCCeEEEe-cC--CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccc
Q 048801 387 NGPSSSNGLQSHQILCCAYNANGTVFVTG-SS--DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVAS 463 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSpdG~~LatG-s~--DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as 463 (1715)
.........|+|||+.|+.. +. +..|.++++.++. ...+..+........|+|++
T Consensus 231 ---------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~----------~~~LT~~~~~d~~p~~SPDG--- 288 (419)
T PRK04043 231 ---------SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT----------LTQITNYPGIDVNGNFVEDD--- 288 (419)
T ss_pred ---------CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc----------EEEcccCCCccCccEECCCC---
Confidence 12234567899999876644 32 3567777876542 22233333323455799987
Q ss_pred cccccccccccccccccCCcccCceEEEEcCCC--eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccc
Q 048801 464 RSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG--SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRL 541 (1715)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG--sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l 541 (1715)
...+++....| .|.++|+.++.. .++
T Consensus 289 ----------------------~~I~F~Sdr~g~~~Iy~~dl~~g~~------------------------------~rl 316 (419)
T PRK04043 289 ----------------------KRIVFVSDRLGYPNIFMKKLNSGSV------------------------------EQV 316 (419)
T ss_pred ----------------------CEEEEEECCCCCceEEEEECCCCCe------------------------------EeC
Confidence 23444444444 455556654321 011
Q ss_pred cCCCCCeeEEEeCCCCCEEEEEecC---------CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCc-
Q 048801 542 LPTPRGVNMIVWSLDNRFVLAAIMD---------CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGR- 611 (1715)
Q Consensus 542 ~~h~~~VtslafSPDG~~LaTgs~D---------GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGt- 611 (1715)
.... . ....|||||++|+..+.. ..|.+.|+.++.. ..+.... ......|+|++..++++....+.
T Consensus 317 t~~g-~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~ 392 (419)
T PRK04043 317 VFHG-K-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANG-VNQFPRFSSDGGSIMFIKYLGNQS 392 (419)
T ss_pred ccCC-C-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCC-CcCCeEECCCCCEEEEEEccCCcE
Confidence 1001 0 124899999999876653 3688889888764 4444332 23368899955555555443333
Q ss_pred -EEEEECCCCceEEEEE
Q 048801 612 -TIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 612 -I~VWDl~tgk~l~tl~ 627 (1715)
+.+.++ +|.....+.
T Consensus 393 ~L~~~~l-~g~~~~~l~ 408 (419)
T PRK04043 393 ALGIIRL-NYNKSFLFP 408 (419)
T ss_pred EEEEEec-CCCeeEEee
Confidence 555566 344344443
No 343
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.19 E-value=7.8e-06 Score=96.45 Aligned_cols=122 Identities=29% Similarity=0.346 Sum_probs=93.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL 323 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L 323 (1715)
.+|+.+..+......-.+++...+.+|....+.+ ..+-||-.-+++++|+||+++|+++..|..|+|-.....-.+..+
T Consensus 111 ~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf 189 (390)
T KOG3914|consen 111 TAISFIREDTSVLVADKAGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF 189 (390)
T ss_pred ceeeeeeccceEEEEeecCCceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh
Confidence 3444444444433334456667788888776444 445679999999999999999999999999999877655444444
Q ss_pred -eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecC
Q 048801 324 -RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYL 370 (1715)
Q Consensus 324 -~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~ 370 (1715)
-||..-|..++..++. .|+++|.|++|++||+.+|+++.++.+
T Consensus 190 clGH~eFVS~isl~~~~----~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 190 CLGHKEFVSTISLTDNY----LLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred ccccHhheeeeeeccCc----eeeecCCCCcEEEEecccCCcccccch
Confidence 5899999999999875 689999999999999999998766543
No 344
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.16 E-value=0.00085 Score=78.04 Aligned_cols=229 Identities=15% Similarity=0.074 Sum_probs=144.5
Q ss_pred EEEECC-CCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEec-CCCCcceEEEEecCCCcEEEEecCCCCCcce
Q 048801 290 DLAVSS-NNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFS-PRPSAIYQLLSSSDDGTCRIWDARYSQYSPR 367 (1715)
Q Consensus 290 sLafSp-Dg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafS-Pdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~ 367 (1715)
+++|.+ ++.++++-...+.|..|+..++.... +.... ...+++. +++ .|+.+...+ +.++|+.+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g----~l~v~~~~~-~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG----RLYVADSGG-IAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS----EEEEEETTC-EEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC----EEEEEEcCc-eEEEecCCCcEEEE
Confidence 578887 67777777778999999988775433 33222 7778887 564 456666555 55569888764433
Q ss_pred ecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC--------CeEEEEeCCCCCccCCCCCce
Q 048801 368 IYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD--------TFARVWSACKSSVEDSEQPIH 439 (1715)
Q Consensus 368 i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D--------G~IrVWDl~t~~~~~~~~~~~ 439 (1715)
...... .........+++.++|++.++.... |.|..++.. ++
T Consensus 76 ~~~~~~--------------------~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--------- 125 (246)
T PF08450_consen 76 ADLPDG--------------------GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--------- 125 (246)
T ss_dssp EEEETT--------------------CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE---------
T ss_pred eeccCC--------------------CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce---------
Confidence 322100 0023457899999999987776543 556666665 21
Q ss_pred eeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCcc-Cccccccccc
Q 048801 440 ELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS-HGKVGRWTRA 518 (1715)
Q Consensus 440 ~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~-~~~~~~~~~~ 518 (1715)
+..+...-...+.|+|+|++ ..++++-+..+.|..+++..... .... .
T Consensus 126 -~~~~~~~~~~pNGi~~s~dg-------------------------~~lyv~ds~~~~i~~~~~~~~~~~~~~~----~- 174 (246)
T PF08450_consen 126 -VTVVADGLGFPNGIAFSPDG-------------------------KTLYVADSFNGRIWRFDLDADGGELSNR----R- 174 (246)
T ss_dssp -EEEEEEEESSEEEEEEETTS-------------------------SEEEEEETTTTEEEEEEEETTTCCEEEE----E-
T ss_pred -EEEEecCcccccceEECCcc-------------------------hheeecccccceeEEEeccccccceeee----e-
Confidence 12222233457889999986 23556778888999988864221 0000 0
Q ss_pred ccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEc-c
Q 048801 519 YHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVH-P 597 (1715)
Q Consensus 519 ~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafS-P 597 (1715)
....+....+....+++..+|++.++....+.|.+++.. |+.+..+......+++++|. +
T Consensus 175 ------------------~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~ 235 (246)
T PF08450_consen 175 ------------------VFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGP 235 (246)
T ss_dssp ------------------EEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEEST
T ss_pred ------------------eEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECC
Confidence 000111112347789999999998888889999999987 99998887666689999994 5
Q ss_pred CCCcEEEEE
Q 048801 598 FNPRIAMSA 606 (1715)
Q Consensus 598 ~dg~lLaSg 606 (1715)
+...+++|.
T Consensus 236 ~~~~L~vTt 244 (246)
T PF08450_consen 236 DGKTLYVTT 244 (246)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEe
Confidence 445566654
No 345
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.13 E-value=0.00056 Score=78.51 Aligned_cols=140 Identities=17% Similarity=0.120 Sum_probs=90.1
Q ss_pred CCCcEEEEeCCCCcEEEEecCC--CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCC
Q 048801 263 DDRLVKIWSMETAFCLASCRGH--EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPS 340 (1715)
Q Consensus 263 ~DGtIrIWDl~tgk~l~tL~gH--s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~ 340 (1715)
++|+|..||..+|+.+....-- .....+. ..+++..|++++.++.|..||..+|+.+..+.. ...+.......++
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~- 77 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGG- 77 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETT-
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeeccc-
Confidence 3789999999999998887531 1222222 233566777888999999999999998887764 2222221222232
Q ss_pred cceEEEEecCCCcEEEEecCCCCCcceecC-CCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC
Q 048801 341 AIYQLLSSSDDGTCRIWDARYSQYSPRIYL-PKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT 419 (1715)
Q Consensus 341 ~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~-~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG 419 (1715)
.++.++.++.|..+|..+|+.+..... ..+... ..........+..++++..++
T Consensus 78 ---~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~g 132 (238)
T PF13360_consen 78 ---RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----------------------VRSSSSPAVDGDRLYVGTSSG 132 (238)
T ss_dssp ---EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----------------------TB--SEEEEETTEEEEEETCS
T ss_pred ---ccccccceeeeEecccCCcceeeeeccccccccc----------------------cccccCceEecCEEEEEeccC
Confidence 566677888999999999988766322 111000 011112222377788888899
Q ss_pred eEEEEeCCCCC
Q 048801 420 FARVWSACKSS 430 (1715)
Q Consensus 420 ~IrVWDl~t~~ 430 (1715)
.|..+|+.+++
T Consensus 133 ~l~~~d~~tG~ 143 (238)
T PF13360_consen 133 KLVALDPKTGK 143 (238)
T ss_dssp EEEEEETTTTE
T ss_pred cEEEEecCCCc
Confidence 99999998764
No 346
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.12 E-value=0.0005 Score=78.88 Aligned_cols=223 Identities=14% Similarity=0.087 Sum_probs=132.9
Q ss_pred CCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCC
Q 048801 351 DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSS 430 (1715)
Q Consensus 351 DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~ 430 (1715)
+|+|..||..+|+.+....+... .....+.. .+++..+++++.++.|..||..+++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~-----------------------~~~~~~~~-~~~~~~v~~~~~~~~l~~~d~~tG~ 57 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPG-----------------------IGGPVATA-VPDGGRVYVASGDGNLYALDAKTGK 57 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSS-----------------------CSSEEETE-EEETTEEEEEETTSEEEEEETTTSE
T ss_pred CCEEEEEECCCCCEEEEEECCCC-----------------------CCCccceE-EEeCCEEEEEcCCCEEEEEECCCCC
Confidence 68899999999887776644110 01112112 2245566667889999999998764
Q ss_pred ccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCc
Q 048801 431 VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHG 510 (1715)
Q Consensus 431 ~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~ 510 (1715)
. +..... ...+..... .....++.++.++.|..+|..+++..-
T Consensus 58 ~---------~W~~~~-~~~~~~~~~---------------------------~~~~~v~v~~~~~~l~~~d~~tG~~~W 100 (238)
T PF13360_consen 58 V---------LWRFDL-PGPISGAPV---------------------------VDGGRVYVGTSDGSLYALDAKTGKVLW 100 (238)
T ss_dssp E---------EEEEEC-SSCGGSGEE---------------------------EETTEEEEEETTSEEEEEETTTSCEEE
T ss_pred E---------EEEeec-cccccceee---------------------------ecccccccccceeeeEecccCCcceee
Confidence 3 222221 111100001 113567777788899999988876432
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCe
Q 048801 511 KVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASS 590 (1715)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V 590 (1715)
.. ..... .............++..++++..++.|..+|+.+|+.+..+.......
T Consensus 101 ~~----~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 101 SI----YLTSS---------------------PPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EE----EE-SS---------------------CTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ee----ccccc---------------------cccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 21 00000 000011111222237888888889999999999999999887644221
Q ss_pred -----------EEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 591 -----------YVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 591 -----------~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
..+.+. ++ .++.++.+|.+..+|+.+|+.+.... ...+.. ....++..|++++.+|.|++||+
T Consensus 156 ~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 156 SSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp S--EEEETTEEEEEECC--TT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEET
T ss_pred CcceeeecccccceEEE--CC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEEC
Confidence 222222 34 55556667754444999999774332 222222 25678888888889999999999
Q ss_pred CCCccc
Q 048801 660 GQGESQ 665 (1715)
Q Consensus 660 ~tGe~~ 665 (1715)
.+|+..
T Consensus 230 ~tG~~~ 235 (238)
T PF13360_consen 230 KTGKVV 235 (238)
T ss_dssp TTTEEE
T ss_pred CCCCEE
Confidence 999743
No 347
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.12 E-value=0.0019 Score=83.06 Aligned_cols=318 Identities=11% Similarity=0.030 Sum_probs=165.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecCCCC------CeE--EEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCC
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLASCRGHEG------DIT--DLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGH 326 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~------~Vt--sLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH 326 (1715)
+..|+.++.++.|.-.|..+|+.+-.+..... .+. .+++. ++..|+.++.++.|..+|..+|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 44677777889999999999988877653322 110 11111 2267888889999999999999998877533
Q ss_pred CCC-----e-EEEEecCCCCcceEEEEec---------CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 327 TGA-----V-TAIAFSPRPSAIYQLLSSS---------DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 327 ~~~-----V-tsLafSPdg~~~~~LaSgS---------~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
... + .+..+.. . .++.++ .+|.|..+|..+|+.+............... ......
T Consensus 140 ~~~~~~~~i~ssP~v~~--~---~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~-----~~~~~~ 209 (488)
T cd00216 140 DQVPPGYTMTGAPTIVK--K---LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPT-----WGPDRQ 209 (488)
T ss_pred CCcCcceEecCCCEEEC--C---EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCC-----CCCCcc
Confidence 221 1 1122222 2 344443 4688999999999877765442111000000 000000
Q ss_pred CCCCCCcce-eEEEEccCCCeEEEecCCC------------------eEEEEeCCCCCccCCCCCceeeeeecCCCCCee
Q 048801 392 SNGLQSHQI-LCCAYNANGTVFVTGSSDT------------------FARVWSACKSSVEDSEQPIHELDVLSGHENDVN 452 (1715)
Q Consensus 392 ~~~~h~~~V-tslafSpdG~~LatGs~DG------------------~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~ 452 (1715)
........| ...++.+.+..+++++.++ .|.-+|+.+++.....+ ...|.....
T Consensus 210 ~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~-------~~~~~~~~~ 282 (488)
T cd00216 210 MWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ-------TTPHDLWDY 282 (488)
T ss_pred eecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee-------CCCCCCccc
Confidence 000001111 2345565566677776665 57777777765321110 011100000
Q ss_pred EEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCC
Q 048801 453 YVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQP 532 (1715)
Q Consensus 453 sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~ 532 (1715)
.....|.- .. ...... .....++.++.+|.+...|..+++.+-.. ...
T Consensus 283 ~~~s~p~~-------~~------~~~~~g--~~~~~V~~g~~~G~l~ald~~tG~~~W~~-----~~~------------ 330 (488)
T cd00216 283 DGPNQPSL-------AD------IKPKDG--KPVPAIVHAPKNGFFYVLDRTTGKLISAR-----PEV------------ 330 (488)
T ss_pred ccCCCCeE-------Ee------ccccCC--CeeEEEEEECCCceEEEEECCCCcEeeEe-----Eee------------
Confidence 00000000 00 000000 00136788889999999999988744321 110
Q ss_pred CCCCCcccccCCCCCeeEEEeCCCCCEEEE------------------EecCCeEEEEECCCCceEEEEecCC-------
Q 048801 533 PRGGPRQRLLPTPRGVNMIVWSLDNRFVLA------------------AIMDCRICVWNAVDGSLVHSLTGHS------- 587 (1715)
Q Consensus 533 ~~g~~~~~l~~h~~~VtslafSPDG~~LaT------------------gs~DGtI~IWDl~sg~~l~tL~gH~------- 587 (1715)
...++.+| ..++. ...+|.|.-.|+.+|+.+.......
T Consensus 331 ---------------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~ 393 (488)
T cd00216 331 ---------------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNI 393 (488)
T ss_pred ---------------ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcccccccc
Confidence 00011111 11111 2235677777888888777664321
Q ss_pred -CCe--EEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEE--EEEcCCCC
Q 048801 588 -ASS--YVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVD--GKFSPDGT 643 (1715)
Q Consensus 588 -~~V--~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~s--vafSPDG~ 643 (1715)
.+. ..+.. .+.+|+.++.||.|+.+|..+|+.+..+... ..+.. +.|..+|+
T Consensus 394 g~~~~~~~~~~---~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~-~~~~a~P~~~~~~g~ 450 (488)
T cd00216 394 GFPHWGGSLAT---AGNLVFAGAADGYFRAFDATTGKELWKFRTP-SGIQATPMTYEVNGK 450 (488)
T ss_pred CCcccCcceEe---cCCeEEEECCCCeEEEEECCCCceeeEEECC-CCceEcCEEEEeCCE
Confidence 111 12222 3456777889999999999999999988753 33332 33444554
No 348
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=98.11 E-value=3.8e-06 Score=103.59 Aligned_cols=87 Identities=20% Similarity=0.280 Sum_probs=79.6
Q ss_pred cccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHH
Q 048801 1628 SRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDW 1707 (1715)
Q Consensus 1628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~ 1707 (1715)
........|..+..-...++|...+..||+|.+|++.|+++.|.++++++.|+++|+.||.+||.|++.+-.+|+.|.+.
T Consensus 161 ~~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~ 240 (371)
T COG5076 161 DGRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKY 240 (371)
T ss_pred cccccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHH
Confidence 33444455788888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 048801 1708 FNRTLNK 1714 (1715)
Q Consensus 1708 ~~~~i~~ 1714 (1715)
|.+.|..
T Consensus 241 ~~~~i~~ 247 (371)
T COG5076 241 FLKLIEE 247 (371)
T ss_pred HHHHHHh
Confidence 9998874
No 349
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.09 E-value=3.7e-05 Score=86.03 Aligned_cols=110 Identities=23% Similarity=0.305 Sum_probs=80.3
Q ss_pred eeEEEeCCCC-CEEEEEecCCeEEEEECCCCceE-EEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEE
Q 048801 548 VNMIVWSLDN-RFVLAAIMDCRICVWNAVDGSLV-HSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRI 625 (1715)
Q Consensus 548 VtslafSPDG-~~LaTgs~DGtI~IWDl~sg~~l-~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~t 625 (1715)
|++++-+|.. ..+++|+.||.|-+||.+..... ..+..|..+++-+-|||.++.-|++++.||.+..||..+ +.+..
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~-~~l~i 260 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST-TFLSI 260 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC-ceEEe
Confidence 8888888854 56678889999999999887543 356789999999999999999999999999999999753 22221
Q ss_pred EE----------c------------ccceEEEE-EEcCCCCEEEEEeCCCeEEEEE
Q 048801 626 YE----------I------------GRFKLVDG-KFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 626 l~----------~------------h~~~V~sv-afSPDG~~LAsgs~DG~I~IWd 658 (1715)
-. + -.....++ .|.--|..|++|++-+.|++++
T Consensus 261 ~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 261 SNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 00 0 00011111 3444577888888888888875
No 350
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.07 E-value=1e-05 Score=66.00 Aligned_cols=38 Identities=24% Similarity=0.719 Sum_probs=36.6
Q ss_pred eeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 048801 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWS 271 (1715)
Q Consensus 234 k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWD 271 (1715)
+++.+|.+|.+.|++|+|+|++.+|++|+.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
No 351
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.06 E-value=0.0039 Score=82.61 Aligned_cols=265 Identities=11% Similarity=0.140 Sum_probs=148.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCC
Q 048801 284 HEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQ 363 (1715)
Q Consensus 284 Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~ 363 (1715)
....|.++.|..++.-|+.+..+|.|.+-|..+.... ....-...|.+++|+|+.. .++..+..++|.+-+- +-.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee---~l~liT~~~tll~mT~-~f~ 141 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEE---LLALITGRQTLLFMTK-DFE 141 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCc---EEEEEeCCcEEEEEec-ccc
Confidence 3468999999999999999999999999988766432 2223457899999999998 6677777777766432 111
Q ss_pred CcceecCCCCCC-----CccCccC---CCC-CCC------CCCCC-----CCCCcceeEEEEccCCCeEEEe-----cCC
Q 048801 364 YSPRIYLPKPPD-----AITGKSN---VPS-NNG------PSSSN-----GLQSHQILCCAYNANGTVFVTG-----SSD 418 (1715)
Q Consensus 364 ~l~~i~~~~~~~-----~i~g~~~---~~~-~~~------~~~~~-----~~h~~~VtslafSpdG~~LatG-----s~D 418 (1715)
.+....+..... ...|+.. ... ..+ ..... ......=+.|+|--||.+||+. ...
T Consensus 142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 111111100000 0001100 000 000 00000 0012223569999999999983 333
Q ss_pred CeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEE---cCC
Q 048801 419 TFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTC---SRD 495 (1715)
Q Consensus 419 G~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSg---S~D 495 (1715)
..|+|||.. +.+.....+ -.+--.+++|-|.| ..+++. +.|
T Consensus 222 RkirV~drE-g~Lns~se~---------~~~l~~~LsWkPsg--------------------------s~iA~iq~~~sd 265 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEP---------VEGLQHSLSWKPSG--------------------------SLIAAIQCKTSD 265 (1265)
T ss_pred eeEEEeccc-chhhcccCc---------ccccccceeecCCC--------------------------CeEeeeeecCCC
Confidence 789999987 433211111 12233568888865 455543 355
Q ss_pred CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEE---EecCCeEEEE
Q 048801 496 GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLA---AIMDCRICVW 572 (1715)
Q Consensus 496 GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaT---gs~DGtI~IW 572 (1715)
+.|.+|.-.. -.++ .+. .........|..++|+.++..|++ ......|++|
T Consensus 266 ~~IvffErNG-L~hg-------~f~------------------l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 266 SDIVFFERNG-LRHG-------EFV------------------LPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred CcEEEEecCC-cccc-------ccc------------------cCCcccccchheeeecCCCCceeeeecccccceEEEE
Confidence 6788886442 1111 111 111222334899999999999998 5555569999
Q ss_pred ECCCCce--EEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 573 NAVDGSL--VHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 573 Dl~sg~~--l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
-+.+-.- ...+.-..... +.|+|-....+..-..+|.+.++|+
T Consensus 320 t~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 320 TTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred EecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 9876432 22222222222 7788754444444445666655553
No 352
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.06 E-value=4.7e-06 Score=83.85 Aligned_cols=45 Identities=20% Similarity=0.226 Sum_probs=41.9
Q ss_pred ccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCC
Q 048801 1650 NRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKN 1694 (1715)
Q Consensus 1650 ~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~ 1694 (1715)
..+-+||||+||++||+|.||.+.+.+..|+++|+.||++||.++
T Consensus 59 gk~~y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 59 GKKFYNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred CCeEeccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 356689999999999999999999999999999999999999773
No 353
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.95 E-value=0.016 Score=65.55 Aligned_cols=109 Identities=12% Similarity=-0.006 Sum_probs=77.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEE
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIA 334 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLa 334 (1715)
..+++.|+..+.+.--|..+|..+..-. -...|-+-+.- -|.+++.|+..|.+++.++.+|.....+.....-=....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 4577788888888888988888765422 12223322222 477899999999999999999988877763322212233
Q ss_pred ecCCCCcceEEEEecCCCcEEEEecCCCCCccee
Q 048801 335 FSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRI 368 (1715)
Q Consensus 335 fSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i 368 (1715)
..+++. ++..|+.|++.+..|..+..++...
T Consensus 101 ~d~~~g---lIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 101 CDFDGG---LIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred EcCCCc---eEEEecCCCcEEEecccccceEEec
Confidence 455665 8999999999999999887765543
No 354
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.94 E-value=3.1e-05 Score=89.49 Aligned_cols=127 Identities=14% Similarity=0.123 Sum_probs=101.7
Q ss_pred CCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCC-----ceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 544 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG-----SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 544 h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg-----~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
....|.++.|...+.+|+.|+.+|.|.++|++.+ .+...+ -|...|+++..-.+++..|++.+.+|+|++||++
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 4567888889888999999999999999999864 334444 4888899987766567788888999999999998
Q ss_pred CCce---EEEEEcccceEE--EEEEcCCCCEEEEEeCCCeEEEEECCCCccccccccc
Q 048801 619 EGTP---IRIYEIGRFKLV--DGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKYD 671 (1715)
Q Consensus 619 tgk~---l~tl~~h~~~V~--svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~~~~~ 671 (1715)
.-++ +..+.+|-..-. -+-+.+....++++++|...+||.+..|......+..
T Consensus 330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred hhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 7666 899988765433 2345677778889999999999999999887665543
No 355
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.93 E-value=0.0038 Score=72.64 Aligned_cols=194 Identities=12% Similarity=0.038 Sum_probs=117.0
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEEC-CCCCEEEEEeCCCeeEEEECCCCCceEEEeC
Q 048801 248 CAIFDR-SGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVS-SNNTLVASASNDFVIRVWRLPDGLPISVLRG 325 (1715)
Q Consensus 248 ~VafSp-DG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafS-pDg~lLASGS~DGtIrVWDl~tg~~l~~L~g 325 (1715)
+++|.+ +|.++++--..+.|..|+..++.... +.... ...+++. +++.+++ +... .+.++|+.+++....+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v-~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYV-ADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEE-EETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEE-EEcC-ceEEEecCCCcEEEEeec
Confidence 567887 77777777778999999998876543 22222 6777887 6655544 4454 455669988855443332
Q ss_pred -----CCCCeEEEEecCCCCcceEEEEecCC--------CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCC
Q 048801 326 -----HTGAVTAIAFSPRPSAIYQLLSSSDD--------GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSS 392 (1715)
Q Consensus 326 -----H~~~VtsLafSPdg~~~~~LaSgS~D--------GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~ 392 (1715)
.....+.+++.+++. +.++.... |.|..++.. ++......
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~---ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~----------------------- 131 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGN---LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD----------------------- 131 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS----EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-----------------------
T ss_pred cCCCcccCCCceEEEcCCCC---EEEEecCCCccccccccceEEECCC-CeEEEEec-----------------------
Confidence 345678999999987 44444332 446666655 33211110
Q ss_pred CCCCCcceeEEEEccCCCeEE-EecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccc
Q 048801 393 NGLQSHQILCCAYNANGTVFV-TGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAF 471 (1715)
Q Consensus 393 ~~~h~~~VtslafSpdG~~La-tGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~ 471 (1715)
.-.....++|+|+++.|. +-+..+.|..|++...... ......+..+....+....+++..++
T Consensus 132 ---~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~g~pDG~~vD~~G----------- 195 (246)
T PF08450_consen 132 ---GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE--LSNRRVFIDFPGGPGYPDGLAVDSDG----------- 195 (246)
T ss_dssp ---EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC--EEEEEEEEE-SSSSCEEEEEEEBTTS-----------
T ss_pred ---CcccccceEECCcchheeecccccceeEEEeccccccc--eeeeeeEEEcCCCCcCCCcceEcCCC-----------
Confidence 012257899999998665 5667888999988642110 00011122222222346677777765
Q ss_pred cccccccccCCcccCceEEEEcCCCeEEEEecC
Q 048801 472 KEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPR 504 (1715)
Q Consensus 472 ~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~ 504 (1715)
++.++....+.|.+++..
T Consensus 196 ---------------~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 196 ---------------NLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp ----------------EEEEEETTTEEEEEETT
T ss_pred ---------------CEEEEEcCCCEEEEECCC
Confidence 567777788899999876
No 356
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.92 E-value=2.6e-05 Score=63.57 Aligned_cols=39 Identities=38% Similarity=0.682 Sum_probs=37.2
Q ss_pred CcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 275 AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 275 gk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
|+++.++.+|.+.|++|+|+|++.+|++|+.|++|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
No 357
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.88 E-value=0.0046 Score=73.09 Aligned_cols=210 Identities=15% Similarity=0.107 Sum_probs=130.2
Q ss_pred EEEEEcC-CCCEEEEEeCCCc-EEEEeCCCCcEEEEecCCCCCeE--EEEECCCCCEEEEEe-----CCCeeEEEECC-C
Q 048801 247 YCAIFDR-SGRFVITGSDDRL-VKIWSMETAFCLASCRGHEGDIT--DLAVSSNNTLVASAS-----NDFVIRVWRLP-D 316 (1715)
Q Consensus 247 t~VafSp-DG~~LaTGS~DGt-IrIWDl~tgk~l~tL~gHs~~Vt--sLafSpDg~lLASGS-----~DGtIrVWDl~-t 316 (1715)
..++.+| .+..++.+-.-|+ ..+||..+++..+.+....+.-. .-+||+||++|++.= ..|.|-|||.. +
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 3567888 5566777766654 77899999998877653322211 357999999999863 35899999998 5
Q ss_pred CCceEEEeCCCCCeEEEEecCCCCcceEEEEecC------------------CCcEEEEecCCCCCcceecCCCCCCCcc
Q 048801 317 GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD------------------DGTCRIWDARYSQYSPRIYLPKPPDAIT 378 (1715)
Q Consensus 317 g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~------------------DGtVrIWDl~tg~~l~~i~~~~~~~~i~ 378 (1715)
...+..+..|.-.-..|.+.|++. .|+++-. +-.|.+.|..+|+++....++
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~---tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp------- 157 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGE---TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP------- 157 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCC---EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC-------
Confidence 677788888877788899999997 4554421 112223333333333222221
Q ss_pred CccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC-------eEEEEeCCCCCccCCCCCceeeeeecCCCCCe
Q 048801 379 GKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT-------FARVWSACKSSVEDSEQPIHELDVLSGHENDV 451 (1715)
Q Consensus 379 g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG-------~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V 451 (1715)
...|...|..+++.++|..++..-..| .|.+++.... +.....+ ......-.+.|
T Consensus 158 --------------~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p---~~~~~~l~~Y~ 219 (305)
T PF07433_consen 158 --------------PDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAP---EEQWRRLNGYI 219 (305)
T ss_pred --------------ccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCC---hHHHHhhCCce
Confidence 123455689999999987666543332 2333333211 0000000 01123345678
Q ss_pred eEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccC
Q 048801 452 NYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH 509 (1715)
Q Consensus 452 ~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~ 509 (1715)
-+|+++.++ ....+|+-..|.+.+||..+++.+
T Consensus 220 gSIa~~~~g-------------------------~~ia~tsPrGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 220 GSIAADRDG-------------------------RLIAVTSPRGGRVAVWDAATGRLL 252 (305)
T ss_pred EEEEEeCCC-------------------------CEEEEECCCCCEEEEEECCCCCEe
Confidence 899999876 234566778889999999986643
No 358
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.79 E-value=0.0029 Score=77.87 Aligned_cols=302 Identities=16% Similarity=0.098 Sum_probs=155.1
Q ss_pred cCCCCEEEEEe---------CCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEE
Q 048801 252 DRSGRFVITGS---------DDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISV 322 (1715)
Q Consensus 252 SpDG~~LaTGS---------~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~ 322 (1715)
|||+++++... ..+.+.|||+.+++....... ...+....|||+|+.||... ++.|.++++.++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 68888887642 346799999999766544333 67888999999999999885 57899999877743332
Q ss_pred Ee-C-------C---------CCCeEEEEecCCCCcceEEEEe-cCCCcEEEEecCCCCCcceecCCCCCCCccCccCCC
Q 048801 323 LR-G-------H---------TGAVTAIAFSPRPSAIYQLLSS-SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384 (1715)
Q Consensus 323 L~-g-------H---------~~~VtsLafSPdg~~~~~LaSg-S~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~ 384 (1715)
.. | - -+.-.++.|||++. +|+.. -.+..|..+.+........
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~---~la~~~~d~~~v~~~~~~~~~~~~~----------------- 138 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSK---YLAFLRFDEREVPEYPLPDYSPPDS----------------- 138 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSS---EEEEEEEE-TTS-EEEEEEESSSTE-----------------
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCC---EEEEEEECCcCCceEEeeccCCccc-----------------
Confidence 21 1 0 11235688999998 44433 3344454443321100000
Q ss_pred CCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeee---ecCCCCCeeEEEEccCcc
Q 048801 385 SNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV---LSGHENDVNYVQFSGCAV 461 (1715)
Q Consensus 385 ~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~---l~gH~~~V~sLafspdg~ 461 (1715)
.-..+..+.+-.-|.-.. .-.+.|+++.+++.. .+.. +..-...+..+.|.+++
T Consensus 139 -----------~yp~~~~~~YPk~G~~np----~v~l~v~~~~~~~~~-------~~~~~~~~~~~~~yl~~v~W~~d~- 195 (353)
T PF00930_consen 139 -----------QYPEVESIRYPKAGDPNP----RVSLFVVDLASGKTT-------ELDPPNSLNPQDYYLTRVGWSPDG- 195 (353)
T ss_dssp -----------SS-EEEEEE--BTTS-------EEEEEEEESSSTCCC-------EE---HHHHTSSEEEEEEEEEETT-
T ss_pred -----------cCCcccccccCCCCCcCC----ceEEEEEECCCCcEE-------EeeeccccCCCccCcccceecCCC-
Confidence 011234444432332211 123566788765431 1111 12334567888898875
Q ss_pred cccccccccccccccccccCCcccCc--eEEEEcCCC---eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCC
Q 048801 462 ASRSAMSDAFKEENVPKFKNSWFCHD--NIVTCSRDG---SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGG 536 (1715)
Q Consensus 462 as~~~~~~~~~~~~~~~~~~s~~~~~--~LaSgS~DG---sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~ 536 (1715)
. .+....++. .+.++|+.++........ .
T Consensus 196 -------------------------~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e---~------------------ 229 (353)
T PF00930_consen 196 -------------------------KRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE---T------------------ 229 (353)
T ss_dssp -------------------------EEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE---E------------------
T ss_pred -------------------------cEEEEEEcccCCCEEEEEEEECCCCceeEEEEe---c------------------
Confidence 2 122223322 244455554332111100 0
Q ss_pred CcccccCCCCCeeEEEeC-CCCC-EEEEEecCC--eEEEEECCCCceEEEEecCCCCeEE-EEEccCCCcEEEEEeCCC-
Q 048801 537 PRQRLLPTPRGVNMIVWS-LDNR-FVLAAIMDC--RICVWNAVDGSLVHSLTGHSASSYV-LDVHPFNPRIAMSAGYDG- 610 (1715)
Q Consensus 537 ~~~~l~~h~~~VtslafS-PDG~-~LaTgs~DG--tI~IWDl~sg~~l~tL~gH~~~V~s-LafSP~dg~lLaSgs~DG- 610 (1715)
..+--.....+.|. +++. +|.....+| .|++++...+. ...+....-.|.. +.+++.++.+..+|..++
T Consensus 230 ----~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p 304 (353)
T PF00930_consen 230 ----SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNP 304 (353)
T ss_dssp ----SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGT
T ss_pred ----CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCC
Confidence 00000112234443 5544 445555666 46666765555 4466655566744 677886677777777633
Q ss_pred ---cEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEe
Q 048801 611 ---RTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSD 649 (1715)
Q Consensus 611 ---tI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs 649 (1715)
.|..-++..+..+..+....+.-..+.|||+|++++...
T Consensus 305 ~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 305 GERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 455556652444455543333336899999999988543
No 359
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00074 Score=79.91 Aligned_cols=94 Identities=18% Similarity=0.159 Sum_probs=82.5
Q ss_pred EEEEeCCCCcEEEEecCCCCCeEEEEECCCCC-EEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEE
Q 048801 267 VKIWSMETAFCLASCRGHEGDITDLAVSSNNT-LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQL 345 (1715)
Q Consensus 267 IrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~-lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~L 345 (1715)
|++.+..+.+....+.+|...|.+++|||... +|..++.+..|.|.|+++...+..+..+ ..+++++|.-+... +|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h--~I 251 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERH--VI 251 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcc--ee
Confidence 77777777777778888999999999999877 7888999999999999999999888877 88999999988764 78
Q ss_pred EEecCCCcEEEEecCCCC
Q 048801 346 LSSSDDGTCRIWDARYSQ 363 (1715)
Q Consensus 346 aSgS~DGtVrIWDl~tg~ 363 (1715)
..|-..|.|.|||++..+
T Consensus 252 YaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred EEeccCceEEEEEccCCC
Confidence 999999999999998654
No 360
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.00057 Score=86.82 Aligned_cols=150 Identities=17% Similarity=0.195 Sum_probs=108.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEE
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISV 322 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~ 322 (1715)
.+.++|++++ +++|+-|..+|.|++.+... .. .+...|+.. ..+|.+++||+.||+|.|-.+.+.+...+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 4567788886 67999999999999999763 33 444445544 56899999999999999999998887777
Q ss_pred EeCCCCCeEEEEecCC--CCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcce
Q 048801 323 LRGHTGAVTAIAFSPR--PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI 400 (1715)
Q Consensus 323 L~gH~~~VtsLafSPd--g~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~V 400 (1715)
+. ...++.+++++|+ -.....+++||.-| +.++.-+=.. +..........+.|
T Consensus 109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg-----------------------nk~~v~l~~~eG~I 163 (846)
T KOG2066|consen 109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG-----------------------NKDSVVLSEGEGPI 163 (846)
T ss_pred Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc-----------------------CccceeeecCccce
Confidence 66 5578999999998 22233799999988 7776422100 00011122346679
Q ss_pred eEEEEccCCCeEEEecCCCeEEEEeCCCCC
Q 048801 401 LCCAYNANGTVFVTGSSDTFARVWSACKSS 430 (1715)
Q Consensus 401 tslafSpdG~~LatGs~DG~IrVWDl~t~~ 430 (1715)
.++.| .|+++|-++.+| |+|||+.+.+
T Consensus 164 ~~i~W--~g~lIAWand~G-v~vyd~~~~~ 190 (846)
T KOG2066|consen 164 HSIKW--RGNLIAWANDDG-VKVYDTPTRQ 190 (846)
T ss_pred EEEEe--cCcEEEEecCCC-cEEEeccccc
Confidence 99999 477888887655 8999998754
No 361
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.77 E-value=3.7e-05 Score=88.90 Aligned_cols=127 Identities=17% Similarity=0.299 Sum_probs=102.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----cEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCeeEEEECCC
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA-----FCLASCRGHEGDITDLAVSS-NNTLVASASNDFVIRVWRLPD 316 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg-----k~l~tL~gHs~~VtsLafSp-Dg~lLASGS~DGtIrVWDl~t 316 (1715)
.+.|.++.|.-.+++|+.|...|.|.+.|+..+ .+.+.+. |...|+++..-. ++.+|.+.+.+|.|.+||++-
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 456889999998999999999999999999754 3444444 899999998876 788999999999999999986
Q ss_pred CCc---eEEEeCCCCCeEEEEec--CCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCC
Q 048801 317 GLP---ISVLRGHTGAVTAIAFS--PRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKP 373 (1715)
Q Consensus 317 g~~---l~~L~gH~~~VtsLafS--Pdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~ 373 (1715)
-++ +....||...-.-+-++ +... .+++++.|...+||.+..+.++.++..+..
T Consensus 331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg---~I~s~GdDcytRiWsl~~ghLl~tipf~~s 389 (425)
T KOG2695|consen 331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEG---SIFSVGDDCYTRIWSLDSGHLLCTIPFPYS 389 (425)
T ss_pred hhcccceeeeecccccccccccccccccc---eEEEccCeeEEEEEecccCceeeccCCCCc
Confidence 665 88888986554444333 4444 788999999999999999998887765543
No 362
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.77 E-value=0.074 Score=68.99 Aligned_cols=110 Identities=14% Similarity=0.068 Sum_probs=69.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecCCC-CCeE---E-------EEECCCCCEEEEEeCCCeeEEEECCCCCceEEE
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLASCRGHE-GDIT---D-------LAVSSNNTLVASASNDFVIRVWRLPDGLPISVL 323 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs-~~Vt---s-------LafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L 323 (1715)
+..|+.++.++.|.-.|..+|+.+-.+.... ..+. + +++ .+..|+.++.|+.|...|..+|+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4577777788899999999999887765311 1111 1 122 2346777888999999999999988765
Q ss_pred eCC--C--CCeEEEEecCCCCcceEEEEec------CCCcEEEEecCCCCCcceecC
Q 048801 324 RGH--T--GAVTAIAFSPRPSAIYQLLSSS------DDGTCRIWDARYSQYSPRIYL 370 (1715)
Q Consensus 324 ~gH--~--~~VtsLafSPdg~~~~~LaSgS------~DGtVrIWDl~tg~~l~~i~~ 370 (1715)
... . ..+++.-..-++ .++.+. .+|.|..+|..+|+.+-.+..
T Consensus 147 ~~~~~~~~~~~tssP~v~~g----~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG----KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred ccccccccccccCCcEEECC----EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 421 1 112111111122 344433 368999999999998766544
No 363
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.76 E-value=0.011 Score=69.95 Aligned_cols=253 Identities=14% Similarity=0.149 Sum_probs=144.0
Q ss_pred eEEEEecCCCCcceEEEEecCCCc-EEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC
Q 048801 330 VTAIAFSPRPSAIYQLLSSSDDGT-CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN 408 (1715)
Q Consensus 330 VtsLafSPdg~~~~~LaSgS~DGt-VrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd 408 (1715)
...++.+|.... .++.+-.-|+ +.+||..+++....+..+. ...+ .=..+|++|
T Consensus 7 gH~~a~~p~~~~--avafaRRPG~~~~v~D~~~g~~~~~~~a~~-gRHF----------------------yGHg~fs~d 61 (305)
T PF07433_consen 7 GHGVAAHPTRPE--AVAFARRPGTFALVFDCRTGQLLQRLWAPP-GRHF----------------------YGHGVFSPD 61 (305)
T ss_pred ccceeeCCCCCe--EEEEEeCCCcEEEEEEcCCCceeeEEcCCC-CCEE----------------------ecCEEEcCC
Confidence 456778885542 5666666665 5679999988766553321 1111 123679999
Q ss_pred CCeEEEec-----CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcc--cccccccccccccccccccC
Q 048801 409 GTVFVTGS-----SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAV--ASRSAMSDAFKEENVPKFKN 481 (1715)
Q Consensus 409 G~~LatGs-----~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~--as~~~~~~~~~~~~~~~~~~ 481 (1715)
|++|.+.- ..|.|-|||...+ ...+..+..|.-.-..+.+.|++. ....+.+.......-
T Consensus 62 G~~LytTEnd~~~g~G~IgVyd~~~~--------~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR----- 128 (305)
T PF07433_consen 62 GRLLYTTENDYETGRGVIGVYDAARG--------YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGR----- 128 (305)
T ss_pred CCEEEEeccccCCCcEEEEEEECcCC--------cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCc-----
Confidence 99998763 4589999999732 345666666666666677888761 111111100000000
Q ss_pred CcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccc--cCCCCCeeEEEeCCCCCE
Q 048801 482 SWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRL--LPTPRGVNMIVWSLDNRF 559 (1715)
Q Consensus 482 s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l--~~h~~~VtslafSPDG~~ 559 (1715)
..|=....+-++.+.|..+++.+.+ ..+ .-|...|+.+++.++|..
T Consensus 129 -----~kLNl~tM~psL~~ld~~sG~ll~q---------------------------~~Lp~~~~~lSiRHLa~~~~G~V 176 (305)
T PF07433_consen 129 -----AKLNLDTMQPSLVYLDARSGALLEQ---------------------------VELPPDLHQLSIRHLAVDGDGTV 176 (305)
T ss_pred -----eecChhhcCCceEEEecCCCceeee---------------------------eecCccccccceeeEEecCCCcE
Confidence 0011111122222222222221111 112 235668999999999987
Q ss_pred EEEEecCCe-------EEEEECCCCceEEEEe-------cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEE
Q 048801 560 VLAAIMDCR-------ICVWNAVDGSLVHSLT-------GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRI 625 (1715)
Q Consensus 560 LaTgs~DGt-------I~IWDl~sg~~l~tL~-------gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~t 625 (1715)
++..-..|. |-+++. ++.+..+. .-.+.+-+|+++.++..+++|+-..|.+.+||..+|+.+..
T Consensus 177 ~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 177 AFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGS 254 (305)
T ss_pred EEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeec
Confidence 776544432 444443 33233332 23467889999995556777888889999999999999887
Q ss_pred EEcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 626 YEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 626 l~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
... ..+..++-.+++ ++++ +..|.+....
T Consensus 255 ~~l--~D~cGva~~~~~-f~~s-sG~G~~~~~~ 283 (305)
T PF07433_consen 255 VPL--PDACGVAPTDDG-FLVS-SGQGQLIRLS 283 (305)
T ss_pred ccc--CceeeeeecCCc-eEEe-CCCccEEEcc
Confidence 753 235556666666 4444 4445544433
No 364
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.75 E-value=0.0098 Score=71.14 Aligned_cols=283 Identities=13% Similarity=0.088 Sum_probs=158.5
Q ss_pred CcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC----------CCeeEEEECCCCCceEEEeCCCC------
Q 048801 265 RLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN----------DFVIRVWRLPDGLPISVLRGHTG------ 328 (1715)
Q Consensus 265 GtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~----------DGtIrVWDl~tg~~l~~L~gH~~------ 328 (1715)
+.|.|.|.++++.+..+... -.-.+.++||++.+++++. .-.|.+||..+..+...+.-...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 47999999999998887643 2334678999998887532 33699999999877765532211
Q ss_pred -CeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc
Q 048801 329 -AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA 407 (1715)
Q Consensus 329 -~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp 407 (1715)
....++++.+++.. ++.-.+---.|.|.|+...+.+..+..|. |.-.-|
T Consensus 95 ~~~~~~~ls~dgk~~-~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-----------------------------C~~iyP 144 (342)
T PF06433_consen 95 PYKNMFALSADGKFL-YVQNFTPATSVTVVDLAAKKVVGEIDTPG-----------------------------CWLIYP 144 (342)
T ss_dssp --GGGEEE-TTSSEE-EEEEESSSEEEEEEETTTTEEEEEEEGTS-----------------------------EEEEEE
T ss_pred ccccceEEccCCcEE-EEEccCCCCeEEEEECCCCceeeeecCCC-----------------------------EEEEEe
Confidence 12335677777632 33334455668888888777766654432 222223
Q ss_pred C-CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCc--c
Q 048801 408 N-GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSW--F 484 (1715)
Q Consensus 408 d-G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~--~ 484 (1715)
. .+-|.+-|.||.+.-..+...- +.... + .-.|.++. -+.+.... .
T Consensus 145 ~~~~~F~~lC~DGsl~~v~Ld~~G--------k~~~~---~-----t~~F~~~~---------------dp~f~~~~~~~ 193 (342)
T PF06433_consen 145 SGNRGFSMLCGDGSLLTVTLDADG--------KEAQK---S-----TKVFDPDD---------------DPLFEHPAYSR 193 (342)
T ss_dssp EETTEEEEEETTSCEEEEEETSTS--------SEEEE---E-----EEESSTTT---------------S-B-S--EEET
T ss_pred cCCCceEEEecCCceEEEEECCCC--------CEeEe---e-----ccccCCCC---------------cccccccceEC
Confidence 2 2346677788988888776321 11100 0 00122211 01111100 0
Q ss_pred cCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe
Q 048801 485 CHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI 564 (1715)
Q Consensus 485 ~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs 564 (1715)
....++-.+..|.|+--|+...... +...+.+.. . ....-.-.+++-.-+++++....|++.-
T Consensus 194 ~~~~~~F~Sy~G~v~~~dlsg~~~~-----~~~~~~~~t-----------~-~e~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 194 DGGRLYFVSYEGNVYSADLSGDSAK-----FGKPWSLLT-----------D-AEKADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp TTTEEEEEBTTSEEEEEEETTSSEE-----EEEEEESS------------H-HHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred CCCeEEEEecCCEEEEEeccCCccc-----ccCcccccC-----------c-cccccCcCCcceeeeeeccccCeEEEEe
Confidence 1245666778888888777653311 111111000 0 0000001134455678887665555432
Q ss_pred cC---C-------eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEE-eCCCcEEEEECCCCceEEEEEc
Q 048801 565 MD---C-------RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSA-GYDGRTIVWDIWEGTPIRIYEI 628 (1715)
Q Consensus 565 ~D---G-------tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSg-s~DGtI~VWDl~tgk~l~tl~~ 628 (1715)
.. + .|.++|+.+++.+..+..- .++.+|.++.++.-+|++. ..++.|.|||..+|+.++.+..
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred cCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 22 1 4899999999999988742 3467899988666566544 5689999999999999998874
No 365
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.75 E-value=0.00048 Score=88.02 Aligned_cols=185 Identities=13% Similarity=0.161 Sum_probs=136.8
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEE
Q 048801 254 SGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAI 333 (1715)
Q Consensus 254 DG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsL 333 (1715)
++..++.|+-...+..+|+.+.+..+...-..+.|+-|.. ++++|.+|...|+|.+-|..+.+.+.++..|++.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 4557788888888999999999888877666656666654 68999999999999999999999999999999999987
Q ss_pred EecCCCCcceEEEEecC---------CCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEE
Q 048801 334 AFSPRPSAIYQLLSSSD---------DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCA 404 (1715)
Q Consensus 334 afSPdg~~~~~LaSgS~---------DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsla 404 (1715)
....+ .|+++|. |..|+|||++..+.+..+.++..+ .-+.
T Consensus 224 Dv~GN-----lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P--------------------------~flr 272 (1118)
T KOG1275|consen 224 DVQGN-----LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP--------------------------QFLR 272 (1118)
T ss_pred eccCC-----eEEEeecccccccccccchhhhhhhhhhhccCCcccccCc--------------------------hhhh
Confidence 77543 6888764 567899999988766655443322 2344
Q ss_pred EccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCc
Q 048801 405 YNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSW 483 (1715)
Q Consensus 405 fSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~ 483 (1715)
|.|.- ..+++++..|...+-|..+.. .|...+.........+..+.+++++
T Consensus 273 f~Psl~t~~~V~S~sGq~q~vd~~~ls-----NP~~~~~~v~p~~s~i~~fDiSsn~----------------------- 324 (1118)
T KOG1275|consen 273 FHPSLTTRLAVTSQSGQFQFVDTATLS-----NPPAGVKMVNPNGSGISAFDISSNG----------------------- 324 (1118)
T ss_pred hcccccceEEEEecccceeeccccccC-----CCccceeEEccCCCcceeEEecCCC-----------------------
Confidence 55532 457777788999888844321 1211222223334458888888876
Q ss_pred ccCceEEEEcCCCeEEEEe
Q 048801 484 FCHDNIVTCSRDGSAIIWI 502 (1715)
Q Consensus 484 ~~~~~LaSgS~DGsIrIWD 502 (1715)
+.++.|..+|.|.+|.
T Consensus 325 ---~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 325 ---DALAFGDHEGHVNLWA 340 (1118)
T ss_pred ---ceEEEecccCcEeeec
Confidence 7999999999999996
No 366
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0014 Score=77.74 Aligned_cols=93 Identities=19% Similarity=0.233 Sum_probs=74.0
Q ss_pred eEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCC
Q 048801 309 IRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNG 388 (1715)
Q Consensus 309 IrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~ 388 (1715)
|++.+-.+.+....+.+|...|..|+|+|.... ++..++.+..|.|.|+.+...+.....
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~G--Ll~~asl~nkiki~dlet~~~vssy~a------------------ 234 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEG--LLGLASLGNKIKIMDLETSCVVSSYIA------------------ 234 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccc--eeeeeccCceEEEEecccceeeeheec------------------
Confidence 566665666666677889999999999998764 688999999999999998765554433
Q ss_pred CCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCC
Q 048801 389 PSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 389 ~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~ 429 (1715)
...+++++|.-|. .+|.+|...|.|.|||++..
T Consensus 235 --------~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 235 --------YNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred --------cCCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 2458999998866 57778888999999999864
No 367
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.67 E-value=0.0064 Score=76.84 Aligned_cols=117 Identities=22% Similarity=0.235 Sum_probs=91.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEE-ecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCce
Q 048801 242 HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLAS-CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPI 320 (1715)
Q Consensus 242 H~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~t-L~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l 320 (1715)
|...|.--+++..+.+|+.|+.-|.|.+|+-.+++.... ..+..+.+..+.+|++..++|.|+..|.|.|+-+..+.+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 344455556777899999999999999999887765433 3345566777888999999999999999999988764321
Q ss_pred E-----EE-eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCC
Q 048801 321 S-----VL-RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY 361 (1715)
Q Consensus 321 ~-----~L-~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~t 361 (1715)
. .+ ..|...|+|++|++++. .|++|...|.|.+-.+.+
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~---k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGM---KLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEeccccc---EEeecCCCceEEEEEech
Confidence 1 11 23778999999999998 899999999999988775
No 368
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.66 E-value=0.013 Score=75.52 Aligned_cols=103 Identities=14% Similarity=0.147 Sum_probs=68.6
Q ss_pred EEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEE-----------------EeCCCcEEEEECCCCc
Q 048801 559 FVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMS-----------------AGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 559 ~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaS-----------------gs~DGtI~VWDl~tgk 621 (1715)
.+++++.+|.+...|..+|+.+....... ..++.+| +.+++. ...+|.|.-.|+.+|+
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~ 377 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK 377 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence 67778889999999999999988764211 1123333 222221 1246788889999999
Q ss_pred eEEEEEccc--------ceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 048801 622 PIRIYEIGR--------FKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 622 ~l~tl~~h~--------~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k 666 (1715)
.+....... .+.......-.+..|++++.||.|+.+|..+|+.+-
T Consensus 378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW 430 (488)
T cd00216 378 VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELW 430 (488)
T ss_pred EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceee
Confidence 887776431 111111112256788889999999999999998763
No 369
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.65 E-value=0.00045 Score=88.29 Aligned_cols=148 Identities=18% Similarity=0.304 Sum_probs=113.4
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC---------CCeeEEEECCCCCceEEE
Q 048801 253 RSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN---------DFVIRVWRLPDGLPISVL 323 (1715)
Q Consensus 253 pDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~---------DGtIrVWDl~tg~~l~~L 323 (1715)
.+++++.+|...|+|.+-|..+.+.++++..|++.|.++.. .|++|++++. |..|+|||++..+.+.-+
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI 262 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI 262 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCc
Confidence 46789999999999999999999999999999999987766 5888998875 456899999887776666
Q ss_pred eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEE
Q 048801 324 RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCC 403 (1715)
Q Consensus 324 ~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsl 403 (1715)
.-+.++ .-+.|.|.-.. .+++++..|.+.+-|..+-. .+... .......+..+..+
T Consensus 263 ~~~~~P-~flrf~Psl~t--~~~V~S~sGq~q~vd~~~ls--------NP~~~-------------~~~v~p~~s~i~~f 318 (1118)
T KOG1275|consen 263 QFPYGP-QFLRFHPSLTT--RLAVTSQSGQFQFVDTATLS--------NPPAG-------------VKMVNPNGSGISAF 318 (1118)
T ss_pred ccccCc-hhhhhcccccc--eEEEEecccceeeccccccC--------CCccc-------------eeEEccCCCcceeE
Confidence 545444 66788887654 78888889999988843211 01000 00111223448999
Q ss_pred EEccCCCeEEEecCCCeEEEEeC
Q 048801 404 AYNANGTVFVTGSSDTFARVWSA 426 (1715)
Q Consensus 404 afSpdG~~LatGs~DG~IrVWDl 426 (1715)
+++++|+.+|.|..+|.|.+|.-
T Consensus 319 DiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 319 DISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred EecCCCceEEEecccCcEeeecC
Confidence 99999999999999999999973
No 370
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.62 E-value=0.019 Score=76.35 Aligned_cols=265 Identities=11% Similarity=0.100 Sum_probs=137.9
Q ss_pred CCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEc
Q 048801 327 TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYN 406 (1715)
Q Consensus 327 ~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafS 406 (1715)
.+.|.++.|..+.. .++.+...|.|.+-|..+...... +.-...|.+++|+
T Consensus 68 d~~i~s~~fl~d~~---~i~v~~~~G~iilvd~et~~~eiv--------------------------g~vd~GI~aaswS 118 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTN---SICVITALGDIILVDPETLELEIV--------------------------GNVDNGISAASWS 118 (1265)
T ss_pred CcceEEEEEecccc---eEEEEecCCcEEEEcccccceeee--------------------------eeccCceEEEeec
Confidence 36899999999887 677778888899888765542211 1124569999999
Q ss_pred cCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccc--c---cccccc--------c
Q 048801 407 ANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS--A---MSDAFK--------E 473 (1715)
Q Consensus 407 pdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~--~---~~~~~~--------~ 473 (1715)
||+.+++..+..+++.+-.-. -.... .++ +..-....+..-.+.|-......+. + ...... .
T Consensus 119 ~Dee~l~liT~~~tll~mT~~-f~~i~-E~~---L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~ 193 (1265)
T KOG1920|consen 119 PDEELLALITGRQTLLFMTKD-FEPIA-EKP---LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIE 193 (1265)
T ss_pred CCCcEEEEEeCCcEEEEEecc-ccchh-ccc---cccccccccccceecccccceeeecchhhhcccccccccccccchh
Confidence 999999998887777654321 10000 000 0000000011111212110000000 0 000000 0
Q ss_pred cccccccCCccc-CceEEEE----cCC-CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCC
Q 048801 474 ENVPKFKNSWFC-HDNIVTC----SRD-GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG 547 (1715)
Q Consensus 474 ~~~~~~~~s~~~-~~~LaSg----S~D-GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~ 547 (1715)
....+..-.|-+ +.++++. ..+ ..|++||-. +.... .-....+-
T Consensus 194 ~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns-----------------------------~se~~~~l 243 (1265)
T KOG1920|consen 194 QDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNS-----------------------------TSEPVEGL 243 (1265)
T ss_pred hccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhc-----------------------------ccCccccc
Confidence 000011122322 2455552 233 789999876 22100 00111223
Q ss_pred eeEEEeCCCCCEEEEEe---cCCeEEEEECCCCceEEEE----ecCCCCeEEEEEccCCCcEEEE---EeCCCcEEEEEC
Q 048801 548 VNMIVWSLDNRFVLAAI---MDCRICVWNAVDGSLVHSL----TGHSASSYVLDVHPFNPRIAMS---AGYDGRTIVWDI 617 (1715)
Q Consensus 548 VtslafSPDG~~LaTgs---~DGtI~IWDl~sg~~l~tL----~gH~~~V~sLafSP~dg~lLaS---gs~DGtI~VWDl 617 (1715)
-.+++|-|.|.++++-. .|+.|.+|.- +|-....| ......|..++|+. ++.+|+. ......|++|-+
T Consensus 244 ~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 244 QHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred ccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecC-CCCceeeeecccccceEEEEEe
Confidence 45789999999998853 4567888874 44332222 22334489999998 6677766 444555999998
Q ss_pred CCCceE--EEEEcccceEEEEEEcCCC-CEEEEEeCCCeEEEEEC
Q 048801 618 WEGTPI--RIYEIGRFKLVDGKFSPDG-TSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 618 ~tgk~l--~tl~~h~~~V~svafSPDG-~~LAsgs~DG~I~IWdl 659 (1715)
.+..-. +.+....... +.|+|.- ..|.+-..+|.+.++++
T Consensus 322 ~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 322 GNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred cCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 664321 2222112222 7888843 23444446677666665
No 371
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.54 E-value=0.0019 Score=81.57 Aligned_cols=107 Identities=15% Similarity=0.172 Sum_probs=86.1
Q ss_pred EEEcCCCCEEEEEe----CCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe
Q 048801 249 AIFDRSGRFVITGS----DDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR 324 (1715)
Q Consensus 249 VafSpDG~~LaTGS----~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~ 324 (1715)
..|+|...++|.++ ..|.|.||- ++|++...... .-.+++++|+|..-.|+.|-.-|.+.||...+.+.-....
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~ 98 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE 98 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence 34788888888776 358899984 66765443321 2235679999999999999999999999988777666667
Q ss_pred CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecC
Q 048801 325 GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360 (1715)
Q Consensus 325 gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~ 360 (1715)
.|..+|..+.|+++|. .|+++..-|.|.+|...
T Consensus 99 th~a~i~~l~wS~~G~---~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 99 THPAPIQGLDWSHDGT---VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCCCCceeEEecCCCC---eEEEcCCCceeEEEEee
Confidence 8999999999999998 89999999999999765
No 372
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.0054 Score=78.77 Aligned_cols=201 Identities=9% Similarity=0.133 Sum_probs=125.4
Q ss_pred EEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCC-eeEEEEccCcccccccccccccccccccccCC
Q 048801 404 AYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEND-VNYVQFSGCAVASRSAMSDAFKEENVPKFKNS 482 (1715)
Q Consensus 404 afSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~-V~sLafspdg~as~~~~~~~~~~~~~~~~~~s 482 (1715)
+|++.+..+|.|+.+|.|.+++-. ...+..+.++... |..+.... .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s----------~~~~~~fqa~~~siv~~L~~~~-~---------------------- 76 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS----------FQLIRGFQAYEQSIVQFLYILN-K---------------------- 76 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc----------ceeeehheecchhhhhHhhccc-C----------------------
Confidence 467788899999999999888754 2334555555555 33332222 1
Q ss_pred cccCceEEEEcCCC-----eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc--ccCCCCCeeEEEeCC
Q 048801 483 WFCHDNIVTCSRDG-----SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR--LLPTPRGVNMIVWSL 555 (1715)
Q Consensus 483 ~~~~~~LaSgS~DG-----sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~--l~~h~~~VtslafSP 555 (1715)
+..|++.+.|+ .++||++........ .... ....+.. ....+.++.+++++.
T Consensus 77 ---~~~L~sv~Ed~~~np~llkiw~lek~~~n~s-P~c~-----------------~~~ri~~~~np~~~~p~s~l~Vs~ 135 (933)
T KOG2114|consen 77 ---QNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS-PQCL-----------------YEHRIFTIKNPTNPSPASSLAVSE 135 (933)
T ss_pred ---ceEEEEEeecCCCCceEEEEecccccCCCCC-ccee-----------------eeeeeeccCCCCCCCcceEEEEEc
Confidence 35777777665 489999874320000 0000 0000001 112356788999999
Q ss_pred CCCEEEEEecCCeEEEEECCC----CceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce--EEEEEcc
Q 048801 556 DNRFVLAAIMDCRICVWNAVD----GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTP--IRIYEIG 629 (1715)
Q Consensus 556 DG~~LaTgs~DGtI~IWDl~s----g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~--l~tl~~h 629 (1715)
+-+.+|+|-.+|.|..+.-.- |....-.....++|+++++..++...+.+ ..-..|.+|.+. |+. +..+..+
T Consensus 136 ~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv-~Tt~~V~~y~l~-gr~p~~~~ld~~ 213 (933)
T KOG2114|consen 136 DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFV-ATTEQVMLYSLS-GRTPSLKVLDNN 213 (933)
T ss_pred cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEE-EecceeEEEEec-CCCcceeeeccC
Confidence 999999999999999885321 22222223446789999998744442222 234579999987 544 4557767
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 630 RFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 630 ~~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
...+.|..|++....+++++. ..|++|+...
T Consensus 214 G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~ 244 (933)
T KOG2114|consen 214 GISLNCSSFSDGTYQFICAGS-EFLYFYDSDG 244 (933)
T ss_pred CccceeeecCCCCccEEEecC-ceEEEEcCCC
Confidence 777888888887665666654 5789998764
No 373
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.0018 Score=82.57 Aligned_cols=145 Identities=18% Similarity=0.174 Sum_probs=103.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCC-----CCEEEEEeCCCeeEEEECC--CCCceEEEeCC
Q 048801 254 SGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN-----NTLVASASNDFVIRVWRLP--DGLPISVLRGH 326 (1715)
Q Consensus 254 DG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpD-----g~lLASGS~DGtIrVWDl~--tg~~l~~L~gH 326 (1715)
+|.+++|||.||.|.|-.+-+.+...++. ...++.+|+++|+ .+.+++|+.-| +.++.-. ..+....+...
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~ 159 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG 159 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC
Confidence 59999999999999999999888877766 4568999999998 56899999988 7776522 11222246667
Q ss_pred CCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEc
Q 048801 327 TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYN 406 (1715)
Q Consensus 327 ~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafS 406 (1715)
.++|.++.|..+ +++-++.+| |+|||+.+++.+..+..+..... ...--..+.|.
T Consensus 160 eG~I~~i~W~g~-----lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R-------------------~e~fpphl~W~ 214 (846)
T KOG2066|consen 160 EGPIHSIKWRGN-----LIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVR-------------------PELFPPHLHWQ 214 (846)
T ss_pred ccceEEEEecCc-----EEEEecCCC-cEEEeccccceeeccCCCCCCCC-------------------cccCCCceEec
Confidence 789999999864 677777777 99999998876655544331100 01113456777
Q ss_pred cCCCeEEEecCCCeEEEEeCC
Q 048801 407 ANGTVFVTGSSDTFARVWSAC 427 (1715)
Q Consensus 407 pdG~~LatGs~DG~IrVWDl~ 427 (1715)
++.+ |+.|- ..+|+|..++
T Consensus 215 ~~~~-LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 215 DEDR-LVIGW-GDSVKICSIK 233 (846)
T ss_pred CCCe-EEEec-CCeEEEEEEe
Confidence 6654 55564 4568888876
No 374
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.49 E-value=0.033 Score=66.82 Aligned_cols=278 Identities=13% Similarity=0.146 Sum_probs=155.4
Q ss_pred CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEE--------ecCCCcEEEEecCCCCCcceecCCCCCCCcc
Q 048801 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLS--------SSDDGTCRIWDARYSQYSPRIYLPKPPDAIT 378 (1715)
Q Consensus 307 GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaS--------gS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~ 378 (1715)
+.|.|.|.++++.+..+.. +-.-.+..+|+++.+ +.++ |-..-.|.+||..+......+.+|..+....
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~-y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTI-YVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEE-EEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEE-EEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 4799999999988877753 233456789998843 2222 2234568999999887777666654311110
Q ss_pred CccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEe--cCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEE
Q 048801 379 GKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTG--SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF 456 (1715)
Q Consensus 379 g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatG--s~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLaf 456 (1715)
......++++.||+++.+. +-...|.|.|+...+. +..+.-. -|...
T Consensus 94 ------------------~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kv---------v~ei~~P----GC~~i 142 (342)
T PF06433_consen 94 ------------------VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKV---------VGEIDTP----GCWLI 142 (342)
T ss_dssp ------------------S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEE---------EEEEEGT----SEEEE
T ss_pred ------------------cccccceEEccCCcEEEEEccCCCCeEEEEECCCCce---------eeeecCC----CEEEE
Confidence 1123446788888877654 2345677778765432 2211110 12222
Q ss_pred ccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCC
Q 048801 457 SGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGG 536 (1715)
Q Consensus 457 spdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~ 536 (1715)
.|.+ ...|.+.+.||++....+...-.... .....+..
T Consensus 143 yP~~-------------------------~~~F~~lC~DGsl~~v~Ld~~Gk~~~--~~t~~F~~--------------- 180 (342)
T PF06433_consen 143 YPSG-------------------------NRGFSMLCGDGSLLTVTLDADGKEAQ--KSTKVFDP--------------- 180 (342)
T ss_dssp EEEE-------------------------TTEEEEEETTSCEEEEEETSTSSEEE--EEEEESST---------------
T ss_pred EecC-------------------------CCceEEEecCCceEEEEECCCCCEeE--eeccccCC---------------
Confidence 2322 35688888999999888873221110 00111110
Q ss_pred CcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceE--EEEec----------CCCCeEEEEEccCCCcEEE
Q 048801 537 PRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLV--HSLTG----------HSASSYVLDVHPFNPRIAM 604 (1715)
Q Consensus 537 ~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l--~tL~g----------H~~~V~sLafSP~dg~lLa 604 (1715)
.....+..-+++..+..++.-+.+|.|+--|+...... ..+.- -.+.-.-+++++..+++.+
T Consensus 181 ------~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 181 ------DDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp ------TTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ------CCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 00111223344445555555777888888777554321 12210 0122345777775555544
Q ss_pred EE--eCCC-------cEEEEECCCCceEEEEEcccceEEEEEEcCCCC-EEEEE-eCCCeEEEEECCCCccccc
Q 048801 605 SA--GYDG-------RTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGT-SIVLS-DDVGQIYLLNTGQGESQKD 667 (1715)
Q Consensus 605 Sg--s~DG-------tI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~-~LAsg-s~DG~I~IWdl~tGe~~k~ 667 (1715)
.- +.+| .|.++|+.+++.+..+.. ..++.++.++.|.+ +|++. ..+|.|.|||..+|+.+..
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 32 2222 478889999999999984 34677999999877 55444 4579999999999976643
No 375
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.48 E-value=0.058 Score=67.81 Aligned_cols=115 Identities=14% Similarity=0.213 Sum_probs=80.4
Q ss_pred CCCeeEEEeCC-CCCEEEEE----ecCCe----EEEEECCCCceEE--EE-ecCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 048801 545 PRGVNMIVWSL-DNRFVLAA----IMDCR----ICVWNAVDGSLVH--SL-TGHSASSYVLDVHPFNPRIAMSAGYDGRT 612 (1715)
Q Consensus 545 ~~~VtslafSP-DG~~LaTg----s~DGt----I~IWDl~sg~~l~--tL-~gH~~~V~sLafSP~dg~lLaSgs~DGtI 612 (1715)
+....++.||. +...+.+. +.+|. -++|+....+.-. .. -.....|.+++++| +...++.|+.||.|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 33445667775 33444432 22332 4566665443221 11 25677899999999 67778889999999
Q ss_pred EEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 613 IVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 613 ~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
.+||...+... +....-..+.++|+|+|..+++|+..|.|.+||++-+
T Consensus 284 iLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 284 ILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 99998766433 3234456788999999999999999999999998765
No 376
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.012 Score=75.89 Aligned_cols=224 Identities=11% Similarity=0.087 Sum_probs=131.9
Q ss_pred CeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCC-eEEEEecCCCCcceEEEEecCCC-----cEEEEecC
Q 048801 287 DITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGA-VTAIAFSPRPSAIYQLLSSSDDG-----TCRIWDAR 360 (1715)
Q Consensus 287 ~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~-VtsLafSPdg~~~~~LaSgS~DG-----tVrIWDl~ 360 (1715)
.|+ +|++.+..+|.|+.+|.|.+.+ ..-+.+..+..+... |+.+....... +|++.+.|+ .|+||++.
T Consensus 27 ~is--c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~---~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AIS--CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQN---FLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred cee--EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCce---EEEEEeecCCCCceEEEEeccc
Confidence 454 4677888999999999887776 233444677777766 44444443333 677776664 48999987
Q ss_pred CCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCcee
Q 048801 361 YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHE 440 (1715)
Q Consensus 361 tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~ 440 (1715)
..+... ++..+..+.. ..........++.+++.+.+-+.+|+|-.+|.|..+.-.-.. .....
T Consensus 101 k~~~n~------sP~c~~~~ri------~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R-----Drgsr 163 (933)
T KOG2114|consen 101 KVDKNN------SPQCLYEHRI------FTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR-----DRGSR 163 (933)
T ss_pred ccCCCC------Ccceeeeeee------eccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh-----ccccc
Confidence 542111 0000000000 000111235668899999999999999999999988643211 01112
Q ss_pred eeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccccccc
Q 048801 441 LDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYH 520 (1715)
Q Consensus 441 l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~ 520 (1715)
.........+|+.+++..++ ..++-+..-..|.+|.+.. +
T Consensus 164 ~~~~~~~~~pITgL~~~~d~--------------------------~s~lFv~Tt~~V~~y~l~g-r------------- 203 (933)
T KOG2114|consen 164 QDYSHRGKEPITGLALRSDG--------------------------KSVLFVATTEQVMLYSLSG-R------------- 203 (933)
T ss_pred eeeeccCCCCceeeEEecCC--------------------------ceeEEEEecceeEEEEecC-C-------------
Confidence 22233345689999998776 2212222334677777652 1
Q ss_pred ccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe-cCCC
Q 048801 521 LKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT-GHSA 588 (1715)
Q Consensus 521 l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~-gH~~ 588 (1715)
+.....+..|...++|..+++....+++|+ +.-|.+|+.....+...+. ||..
T Consensus 204 --------------~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 204 --------------TPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred --------------CcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeE
Confidence 111223455677889999987665455554 4469999987655555554 5543
No 377
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.46 E-value=0.07 Score=65.14 Aligned_cols=95 Identities=14% Similarity=0.067 Sum_probs=45.3
Q ss_pred eCCCCcEEEEecCCCCCeE-----EEEECCCCCEEEEEeC-CC--eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcc
Q 048801 271 SMETAFCLASCRGHEGDIT-----DLAVSSNNTLVASASN-DF--VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAI 342 (1715)
Q Consensus 271 Dl~tgk~l~tL~gHs~~Vt-----sLafSpDg~lLASGS~-DG--tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~ 342 (1715)
|..||..+..|......-. .=+|.+||+.|+.++. || .+.+.|+.+++..+...+-........++++++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~-- 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDR-- 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSS--
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCC--
Confidence 5678877777764433222 2356788876655544 54 567778888875554443223233566778776
Q ss_pred eEEEEecCCCcEEEEecCCCCCccee
Q 048801 343 YQLLSSSDDGTCRIWDARYSQYSPRI 368 (1715)
Q Consensus 343 ~~LaSgS~DGtVrIWDl~tg~~l~~i 368 (1715)
.++-......|+-.|+.+.+....+
T Consensus 94 -~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 94 -ALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp -EEEEEETTTEEEEEETTT--EEEEE
T ss_pred -eEEEEECCCeEEEEECCcCcEEEEE
Confidence 4443334467888898887654333
No 378
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.40 E-value=0.12 Score=65.20 Aligned_cols=53 Identities=8% Similarity=-0.023 Sum_probs=39.5
Q ss_pred CCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecC-CCCeEEEEEcc
Q 048801 545 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH-SASSYVLDVHP 597 (1715)
Q Consensus 545 ~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH-~~~V~sLafSP 597 (1715)
.+++..+++||+|++||.-..+|.+.|....-.+.+..+... ......+.|+-
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG 269 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG 269 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC
Confidence 457999999999999999999999999887655555555433 33445666654
No 379
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.36 E-value=0.0014 Score=82.86 Aligned_cols=70 Identities=14% Similarity=0.183 Sum_probs=63.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP 315 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~ 315 (1715)
+++++|+|..-.||.|-.-|.+.+|...+.+.......|..+|..+.||++|..|+++..-|.|.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 4569999999899999889999999998877777777899999999999999999999999999999875
No 380
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.36 E-value=0.058 Score=61.30 Aligned_cols=105 Identities=12% Similarity=0.021 Sum_probs=74.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEE
Q 048801 254 SGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAI 333 (1715)
Q Consensus 254 DG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsL 333 (1715)
-|.+++.|...|.+.+.++.+|.....+..-..-=......+++.++..|+.|++.+..|..+..++...+...+...+-
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 36789999999999999999997777665332221233456789999999999999999999988888877554444555
Q ss_pred EecCCCCcceEEEEecCCCcEEEEecCC
Q 048801 334 AFSPRPSAIYQLLSSSDDGTCRIWDARY 361 (1715)
Q Consensus 334 afSPdg~~~~~LaSgS~DGtVrIWDl~t 361 (1715)
++.|-.. .|..+...|.|.--..+.
T Consensus 142 ~i~~g~~---sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 142 VIAPGDG---SLYAAITAGAVLAVTKNP 166 (354)
T ss_pred eecCCCc---eEEEEeccceEEEEccCC
Confidence 6666333 345555556555444443
No 381
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.31 E-value=0.025 Score=69.74 Aligned_cols=306 Identities=13% Similarity=0.138 Sum_probs=158.4
Q ss_pred CCCCCEEEEEe---------CCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCC
Q 048801 294 SSNNTLVASAS---------NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQY 364 (1715)
Q Consensus 294 SpDg~lLASGS---------~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~ 364 (1715)
|||+++++... ..+.+.|||+.+++...... ....+....|+|++. .++... ++.|.++++.++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~---~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGK---YIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSST---EEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-CccccccceeecCCC---eeEEEe-cCceEEEECCCCCe
Confidence 67888777642 24679999999876443333 367788999999987 444443 57899999877743
Q ss_pred cceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-CCeEEEEeCCCCCccCCCCCceeeee
Q 048801 365 SPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-DTFARVWSACKSSVEDSEQPIHELDV 443 (1715)
Q Consensus 365 l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-DG~IrVWDl~t~~~~~~~~~~~~l~~ 443 (1715)
..+..........|.... ..... --..-..+-|||||+.||.... +..|..+.+..
T Consensus 76 -~~lT~dg~~~i~nG~~dw------vyeEE-v~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~--------------- 132 (353)
T PF00930_consen 76 -TQLTTDGEPGIYNGVPDW------VYEEE-VFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD--------------- 132 (353)
T ss_dssp -EESES--TTTEEESB--H------HHHHH-TSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE---------------
T ss_pred -EEeccccceeEEcCccce------ecccc-ccccccceEECCCCCEEEEEEECCcCCceEEeec---------------
Confidence 233332211111111000 00000 0011256889999998887643 33344443321
Q ss_pred ecCCC---CCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC--eEEEEecCCCccCccccccccc
Q 048801 444 LSGHE---NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG--SAIIWIPRSRRSHGKVGRWTRA 518 (1715)
Q Consensus 444 l~gH~---~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG--sIrIWDl~t~~~~~~~~~~~~~ 518 (1715)
..... ..+..+.+--- |...- .+.|+|+.+++....
T Consensus 133 ~~~~~~~yp~~~~~~YPk~--------------------------------G~~np~v~l~v~~~~~~~~~~~------- 173 (353)
T PF00930_consen 133 YSPPDSQYPEVESIRYPKA--------------------------------GDPNPRVSLFVVDLASGKTTEL------- 173 (353)
T ss_dssp ESSSTESS-EEEEEE--BT--------------------------------TS---EEEEEEEESSSTCCCEE-------
T ss_pred cCCccccCCcccccccCCC--------------------------------CCcCCceEEEEEECCCCcEEEe-------
Confidence 00110 12222322111 11111 345677765442100
Q ss_pred ccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC-----CeEEEEECCCCceEEEEec-CCCC---
Q 048801 519 YHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD-----CRICVWNAVDGSLVHSLTG-HSAS--- 589 (1715)
Q Consensus 519 ~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D-----GtI~IWDl~sg~~l~tL~g-H~~~--- 589 (1715)
...........-+..+.|++++..|++.-.+ ..+.++|..++.....+.. ..+.
T Consensus 174 -----------------~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~ 236 (353)
T PF00930_consen 174 -----------------DPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDV 236 (353)
T ss_dssp --------------------HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSS
T ss_pred -----------------eeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceee
Confidence 0000112234568899999999944443322 2477788888766544432 2222
Q ss_pred eEEEEEc-cCCCcEEEEEeCCCcEEE--EECCCCceEEEEEcccceEEE-EEEcCCCCEEE-EEeCC----CeEEEEECC
Q 048801 590 SYVLDVH-PFNPRIAMSAGYDGRTIV--WDIWEGTPIRIYEIGRFKLVD-GKFSPDGTSIV-LSDDV----GQIYLLNTG 660 (1715)
Q Consensus 590 V~sLafS-P~dg~lLaSgs~DGtI~V--WDl~tgk~l~tl~~h~~~V~s-vafSPDG~~LA-sgs~D----G~I~IWdl~ 660 (1715)
...+.|. +++..+|.....||--+| .+...+. ...+..+...|.. +.|++++..|. ++..+ -.|+..++.
T Consensus 237 ~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 237 YDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp SSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred ecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 2345554 667777777778885444 5554444 4455556666755 68899988776 44432 267777777
Q ss_pred -CCcccc----ccc-cceeecCCCccEEEc
Q 048801 661 -QGESQK----DAK-YDQFFLGDYRPLIRD 684 (1715)
Q Consensus 661 -tGe~~k----~~~-~~~~fs~D~r~L~~d 684 (1715)
.|+... ... +...|+||++.++..
T Consensus 316 ~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 316 SGGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp ETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred CCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 554432 111 367888888877644
No 382
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.31 E-value=0.035 Score=71.28 Aligned_cols=105 Identities=13% Similarity=0.077 Sum_probs=77.8
Q ss_pred eCCCCCEEEEEecCCeEEEEECCC----C-ceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce-----
Q 048801 553 WSLDNRFVLAAIMDCRICVWNAVD----G-SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTP----- 622 (1715)
Q Consensus 553 fSPDG~~LaTgs~DGtI~IWDl~s----g-~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~----- 622 (1715)
+.++|++...+ ++.|.+.|..+ + ..+..+. -......+.++|++.++++++..+.+|-|.|+.+.+.
T Consensus 284 ~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 44578877763 67899999988 3 4444443 3444578999997777777788899999999987552
Q ss_pred -------EEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 623 -------IRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 623 -------l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
+.....+.++ ...+|.++|....+-.-|.+|..|++..
T Consensus 361 ~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 4444444433 4578999999888888999999999865
No 383
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.22 E-value=0.084 Score=65.78 Aligned_cols=90 Identities=16% Similarity=0.153 Sum_probs=64.5
Q ss_pred ccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEE--ccCC----------------C
Q 048801 539 QRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDV--HPFN----------------P 600 (1715)
Q Consensus 539 ~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLaf--SP~d----------------g 600 (1715)
..+......+.+|+.+|++++.|+...=|+|.++|+.++..++.++|..+.-..-.. ...+ -
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceE
Confidence 344455567899999999999999888899999999999988888876553211110 0100 0
Q ss_pred cEEEEEeCCCcEEEEECCCCceEEEEEc
Q 048801 601 RIAMSAGYDGRTIVWDIWEGTPIRIYEI 628 (1715)
Q Consensus 601 ~lLaSgs~DGtI~VWDl~tgk~l~tl~~ 628 (1715)
.+++-+-.-|.|-||.+.+|..+..+..
T Consensus 381 ~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 381 FLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 2344466789999999999988877764
No 384
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.22 E-value=0.00044 Score=85.61 Aligned_cols=198 Identities=15% Similarity=0.202 Sum_probs=128.6
Q ss_pred CeEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCcE--EEEecCCCCCeEEEEECC-CCCEEEEEe----CCCeeEEEECC
Q 048801 245 AVYCAIFDR--SGRFVITGSDDRLVKIWSMETAFC--LASCRGHEGDITDLAVSS-NNTLVASAS----NDFVIRVWRLP 315 (1715)
Q Consensus 245 ~Vt~VafSp--DG~~LaTGS~DGtIrIWDl~tgk~--l~tL~gHs~~VtsLafSp-Dg~lLASGS----~DGtIrVWDl~ 315 (1715)
.+.|+++.- +..+++.|..+|.|-+-.+....- .....+|....++++|++ |...||+|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 455666543 335788898999999988754322 234567888999999998 667888873 36789999998
Q ss_pred CC--Cce--EEEeC-CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCC
Q 048801 316 DG--LPI--SVLRG-HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPS 390 (1715)
Q Consensus 316 tg--~~l--~~L~g-H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~ 390 (1715)
++ .+. ..+.+ -.....+++|..+.+ ++++|.....+.++|++.......
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~k---lvlaGm~sr~~~ifdlRqs~~~~~----------------------- 191 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTK---LVLAGMTSRSVHIFDLRQSLDSVS----------------------- 191 (783)
T ss_pred cccCCCccccccccccccCccccccccCcc---hhhcccccchhhhhhhhhhhhhhh-----------------------
Confidence 76 222 12222 334566888887766 788888888999999873221100
Q ss_pred CCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeC-CCCCccCCCCCceeeeeecCCCC----CeeEEEEccCccccc
Q 048801 391 SSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSA-CKSSVEDSEQPIHELDVLSGHEN----DVNYVQFSGCAVASR 464 (1715)
Q Consensus 391 ~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl-~t~~~~~~~~~~~~l~~l~gH~~----~V~sLafspdg~as~ 464 (1715)
......+..+.+.| .+.++++-. ||.|.+||. .+- ..++..+..... .+..++|+|..
T Consensus 192 ---svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rni--------enpl~~i~~~~N~~~~~l~~~aycPtr---- 255 (783)
T KOG1008|consen 192 ---SVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNI--------ENPLQIILRNENKKPKQLFALAYCPTR---- 255 (783)
T ss_pred ---hhhhhhcccceecCCCCCceeccc-cCceeeccchhhh--------ccHHHHHhhCCCCcccceeeEEeccCC----
Confidence 01123366777888 777887665 999999994 221 112222222222 48889999854
Q ss_pred ccccccccccccccccCCcccCceEEEEcC-CCeEEEEecCC
Q 048801 465 SAMSDAFKEENVPKFKNSWFCHDNIVTCSR-DGSAIIWIPRS 505 (1715)
Q Consensus 465 ~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~-DGsIrIWDl~t 505 (1715)
...+++... .++|+++++..
T Consensus 256 ---------------------tglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 256 ---------------------TGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ---------------------cchhhhhccCcceEEEecccc
Confidence 245666554 47899998863
No 385
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.21 E-value=0.054 Score=69.60 Aligned_cols=106 Identities=12% Similarity=0.088 Sum_probs=71.2
Q ss_pred CCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCce------------EEEEecCCCCeEEEEEccCCCcEEEEEeCC
Q 048801 543 PTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGSL------------VHSLTGHSASSYVLDVHPFNPRIAMSAGYD 609 (1715)
Q Consensus 543 ~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~~------------l~tL~gH~~~V~sLafSP~dg~lLaSgs~D 609 (1715)
.-......+.+||||+++++++ .+.+|.|.|+.+.+. +....--.++ ...+|.+ ++....|-..|
T Consensus 318 PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg-~G~aytslf~d 395 (635)
T PRK02888 318 PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDG-RGNAYTTLFLD 395 (635)
T ss_pred ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECC-CCCEEEeEeec
Confidence 3455677899999999987765 488999999987552 3333322333 4567887 55677788889
Q ss_pred CcEEEEECCC----------CceEEEEEcccceEE-----EEEEcCCCCEEEEEeC
Q 048801 610 GRTIVWDIWE----------GTPIRIYEIGRFKLV-----DGKFSPDGTSIVLSDD 650 (1715)
Q Consensus 610 GtI~VWDl~t----------gk~l~tl~~h~~~V~-----svafSPDG~~LAsgs~ 650 (1715)
..|..|++.+ ...+..+..|..+.. .=.-.|||++|++...
T Consensus 396 sqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 396 SQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred ceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 9999999876 234444544432211 1134789999998754
No 386
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=97.17 E-value=9.3e-05 Score=96.81 Aligned_cols=71 Identities=21% Similarity=0.265 Sum_probs=63.5
Q ss_pred hccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1645 KLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1645 ~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
-.+|+-....|++++||+.||+|+||..+..|+.|+..+++||++||.+.++|+.+++.+.+.|.+++.+|
T Consensus 24 ~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 94 (640)
T KOG1474|consen 24 LPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLEKLFPKKLRSM 94 (640)
T ss_pred chhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccchhhcccccccc
Confidence 45556666667788999999999999999999999999999999999999999999999999998877654
No 387
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.14 E-value=0.041 Score=68.57 Aligned_cols=299 Identities=13% Similarity=0.106 Sum_probs=139.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC--------
Q 048801 245 AVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD-------- 316 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t-------- 316 (1715)
.|+++.|.++..-|+.|...|.|.||.+...+... ..-...-..+.+.+- ...++.-.|-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58999999999999999999999999876543322 000011111111110 00011112222221
Q ss_pred C-CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCC
Q 048801 317 G-LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL 395 (1715)
Q Consensus 317 g-~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~ 395 (1715)
| .+...+....+.|++++.+.-| +++.|..+|.|.|.|++....+....+.. ......
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG----Fvaigy~~G~l~viD~RGPavI~~~~i~~-----------------~~~~~~ 133 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG----FVAIGYESGSLVVIDLRGPAVIYNENIRE-----------------SFLSKS 133 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS----EEEEEETTSEEEEEETTTTEEEEEEEGGG-------------------T-SS
T ss_pred ccCchhheeccCCcEeEEecCCCc----EEEEEecCCcEEEEECCCCeEEeeccccc-----------------cccccc
Confidence 1 2444555668999999998766 89999999999999998777655432211 011122
Q ss_pred CCcceeEEEEcc-----CC---CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccc
Q 048801 396 QSHQILCCAYNA-----NG---TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAM 467 (1715)
Q Consensus 396 h~~~VtslafSp-----dG---~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~ 467 (1715)
....|+++.|.. |+ -.+++|+..|.+.+|.+.-... .............+.++|..|
T Consensus 134 ~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~--g~f~v~~~~~~~~~~~~i~~I------------- 198 (395)
T PF08596_consen 134 SSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSN--GRFSVQFAGATTNHDSPILSI------------- 198 (395)
T ss_dssp ----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GG--G-EEEEEEEEE--SS----EE-------------
T ss_pred cccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCC--CceEEEEeeccccCCCceEEE-------------
Confidence 345578888863 33 3688889999999998741000 000000001111112222211
Q ss_pred cccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCC
Q 048801 468 SDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG 547 (1715)
Q Consensus 468 ~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~ 547 (1715)
...+..++......... .+. ......
T Consensus 199 -------------------------------~~i~~~~G~~a~At~~~----------------------~~~-l~~g~~ 224 (395)
T PF08596_consen 199 -------------------------------IPINADTGESALATISA----------------------MQG-LSKGIS 224 (395)
T ss_dssp -------------------------------EEEETTT--B-B-BHHH----------------------HHG-GGGT--
T ss_pred -------------------------------EEEECCCCCcccCchhH----------------------hhc-cccCCC
Confidence 22232222210000000 000 000001
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEc----cCCCcEEEEEeCCCcEEEEECCCCceE
Q 048801 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVH----PFNPRIAMSAGYDGRTIVWDIWEGTPI 623 (1715)
Q Consensus 548 VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafS----P~dg~lLaSgs~DGtI~VWDl~tgk~l 623 (1715)
| .| +++ ...+..|+|+...+.+..+......-....+.+- -..+..|++-..+|.|+++.+-.-+.+
T Consensus 225 i-------~g-~vV-vvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 225 I-------PG-YVV-VVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp ---------E-EEE-EE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred c-------Cc-EEE-EEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence 1 11 333 3446789999998887766555322223333442 124567888889999999999998888
Q ss_pred EEEEccc----ceEEEEEEcCCCCEEEEEeC
Q 048801 624 RIYEIGR----FKLVDGKFSPDGTSIVLSDD 650 (1715)
Q Consensus 624 ~tl~~h~----~~V~svafSPDG~~LAsgs~ 650 (1715)
..+.... ..+....|+++|..++..+.
T Consensus 296 ~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 296 KSVSLPPPLDSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp EEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred hcccCCCccccccccccEECCCCCEEEEeCc
Confidence 8877532 22445677888887766544
No 388
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.13 E-value=0.0048 Score=77.13 Aligned_cols=74 Identities=14% Similarity=0.132 Sum_probs=64.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC
Q 048801 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD 316 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t 316 (1715)
.+...|.|++++|+...|+.|+.||.|.+||...+... +..+.-..+.++|+|+|.++++|+..|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 57789999999999999999999999999998776333 333456788999999999999999999999999753
No 389
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.97 E-value=0.18 Score=58.89 Aligned_cols=205 Identities=13% Similarity=0.121 Sum_probs=113.8
Q ss_pred cceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccc
Q 048801 398 HQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENV 476 (1715)
Q Consensus 398 ~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~ 476 (1715)
..+..++|+|+. .++++....+.|..++.. +++ ... ..+.+ .+..-.|++..++
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~v------lr~-i~l~g-~~D~EgI~y~g~~---------------- 76 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKV------LRR-IPLDG-FGDYEGITYLGNG---------------- 76 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---E------EEE-EE-SS--SSEEEEEE-STT----------------
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCE------EEE-EeCCC-CCCceeEEEECCC----------------
Confidence 348999999974 577777788888888764 322 111 12233 3466777777654
Q ss_pred ccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC
Q 048801 477 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD 556 (1715)
Q Consensus 477 ~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD 556 (1715)
.++++--.++.+.++++........... ...+.+. ....+..++-.++|++.
T Consensus 77 ----------~~vl~~Er~~~L~~~~~~~~~~~~~~~~-~~~~~l~-----------------~~~~~N~G~EGla~D~~ 128 (248)
T PF06977_consen 77 ----------RYVLSEERDQRLYIFTIDDDTTSLDRAD-VQKISLG-----------------FPNKGNKGFEGLAYDPK 128 (248)
T ss_dssp ----------EEEEEETTTTEEEEEEE----TT--EEE-EEEEE--------------------S---SS--EEEEEETT
T ss_pred ----------EEEEEEcCCCcEEEEEEeccccccchhh-ceEEecc-----------------cccCCCcceEEEEEcCC
Confidence 4555556789999988854221110000 0011110 01234567899999998
Q ss_pred CCEEEEEecCCeEEEEECCC---CceEEEE--e------cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEE
Q 048801 557 NRFVLAAIMDCRICVWNAVD---GSLVHSL--T------GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRI 625 (1715)
Q Consensus 557 G~~LaTgs~DGtI~IWDl~s---g~~l~tL--~------gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~t 625 (1715)
+..|+++-...-..||.+.. ...+... . .....+.+++++|..+++++....+..|.++| .+|+.+..
T Consensus 129 ~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~ 207 (248)
T PF06977_consen 129 TNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSS 207 (248)
T ss_dssp TTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEE
T ss_pred CCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEE
Confidence 88777777766666666543 2222211 1 13345789999998889998888999999999 68888877
Q ss_pred EEccc---------ceEEEEEEcCCCCEEEEEeCCCeEEEE
Q 048801 626 YEIGR---------FKLVDGKFSPDGTSIVLSDDVGQIYLL 657 (1715)
Q Consensus 626 l~~h~---------~~V~svafSPDG~~LAsgs~DG~I~IW 657 (1715)
+.... ...-.|+|.++|++.+ .++-+..++|
T Consensus 208 ~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 208 LSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp EE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred EEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 76433 1355789999996544 4466666665
No 390
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.92 E-value=0.064 Score=67.50 Aligned_cols=137 Identities=18% Similarity=0.127 Sum_probs=86.0
Q ss_pred eeEEEeCCCCCEEEEEe-cCC--eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCc--EEEEECCCCce
Q 048801 548 VNMIVWSLDNRFVLAAI-MDC--RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGR--TIVWDIWEGTP 622 (1715)
Q Consensus 548 VtslafSPDG~~LaTgs-~DG--tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGt--I~VWDl~tgk~ 622 (1715)
-...+|||||+.|+.+. .|| .|++.|+..+...+ +..-.+.-..-.|+|++..++.+.+..|. |.+.+...+..
T Consensus 240 ~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 240 NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred cCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 34568999999887654 344 47778887776433 55444444467899977777777777776 44555544443
Q ss_pred EEEEEcccceEEEEEEcCCCCEEEEEeC-CCe--EEEEECCCCccc-----cccccceeecCCCccEEEcCC
Q 048801 623 IRIYEIGRFKLVDGKFSPDGTSIVLSDD-VGQ--IYLLNTGQGESQ-----KDAKYDQFFLGDYRPLIRDSL 686 (1715)
Q Consensus 623 l~tl~~h~~~V~svafSPDG~~LAsgs~-DG~--I~IWdl~tGe~~-----k~~~~~~~fs~D~r~L~~d~~ 686 (1715)
..+....+.-..-.|||||++|+..+. +|. |.+.++.++... ....-...|.++++.+++...
T Consensus 319 -~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 319 -TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred -eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEecc
Confidence 333322222237789999999997764 354 666777666421 122223467778887776543
No 391
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.86 E-value=3.3 Score=55.29 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=80.5
Q ss_pred eeEEEeCCC-CCEEEEEe----------cCCeEEEEECCCCceEEEEecC--CCCeEEEEEccCCCcEEEEEeCCCcEEE
Q 048801 548 VNMIVWSLD-NRFVLAAI----------MDCRICVWNAVDGSLVHSLTGH--SASSYVLDVHPFNPRIAMSAGYDGRTIV 614 (1715)
Q Consensus 548 VtslafSPD-G~~LaTgs----------~DGtI~IWDl~sg~~l~tL~gH--~~~V~sLafSP~dg~lLaSgs~DGtI~V 614 (1715)
|.++.|..| +.++++|. ..|.|.|+.+..+..+.....+ .+.|.++.. ++++++| +-...|++
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~--fngkllA--~In~~vrL 852 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE--FNGKLLA--GINQSVRL 852 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh--hCCeEEE--ecCcEEEE
Confidence 555567777 77888776 3578888888775555444333 445555543 4677775 45678999
Q ss_pred EECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 615 WDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 615 WDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
|+..+++.++.-..+..++..+...-.|..+++|+--+.+.+....
T Consensus 853 ye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~ 898 (1096)
T KOG1897|consen 853 YEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYK 898 (1096)
T ss_pred EEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEe
Confidence 9999988888777788899999999999999999998888775543
No 392
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.85 E-value=0.25 Score=58.37 Aligned_cols=143 Identities=18% Similarity=0.169 Sum_probs=86.0
Q ss_pred CCCCEEEEEeCCCcEEEEeCC-CCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE--------
Q 048801 253 RSGRFVITGSDDRLVKIWSME-TAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL-------- 323 (1715)
Q Consensus 253 pDG~~LaTGS~DGtIrIWDl~-tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L-------- 323 (1715)
..++.|+.|..+| |.++++. .......+. ...|..|...++-+.|++-+ |+.+.++++.........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4578999999998 8999983 333333333 33399999999877777664 499999998765433311
Q ss_pred ------eCCCCCeEEEE-ecCCCCcceEEEEecCCCcEEEEecCCCC-----CcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 324 ------RGHTGAVTAIA-FSPRPSAIYQLLSSSDDGTCRIWDARYSQ-----YSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 324 ------~gH~~~VtsLa-fSPdg~~~~~LaSgS~DGtVrIWDl~tg~-----~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
......+...+ -...... ..|+.+. ...|.+|.+.... ....+.+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~-~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~l--------------------- 137 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGS-RRLCVAV-KKKILIYEWNDPRNSFSKLLKEISL--------------------- 137 (275)
T ss_pred ccccccccccCCeeEEeeccccccc-eEEEEEE-CCEEEEEEEECCcccccceeEEEEc---------------------
Confidence 11223344444 1122221 2444443 4488888776531 1222222
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCC
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSS 430 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~ 430 (1715)
...+.+++|. ++.|++|..++ ..+.|+.++.
T Consensus 138 -----p~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~ 168 (275)
T PF00780_consen 138 -----PDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGS 168 (275)
T ss_pred -----CCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCC
Confidence 3457888888 55777776544 7788887653
No 393
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.82 E-value=0.51 Score=61.35 Aligned_cols=68 Identities=9% Similarity=0.009 Sum_probs=45.5
Q ss_pred CCEEEEEeCCCeeEEEECCCCCceEEEeCCC-CCeEE----------EEecCCCCcceEEEEecCCCcEEEEecCCCCCc
Q 048801 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHT-GAVTA----------IAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS 365 (1715)
Q Consensus 297 g~lLASGS~DGtIrVWDl~tg~~l~~L~gH~-~~Vts----------LafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l 365 (1715)
+..|+.++.++.|.-.|..+|+.+..+.... ..+.. +++. +. .++.++.|+.|...|..+|+.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~---~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DG---KVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CC---EEEEEcCCCEEEEEECCCCCEE
Confidence 4466677778888888999998887765211 11111 1222 12 5777888999999999999876
Q ss_pred ceec
Q 048801 366 PRIY 369 (1715)
Q Consensus 366 ~~i~ 369 (1715)
....
T Consensus 144 W~~~ 147 (527)
T TIGR03075 144 WSKK 147 (527)
T ss_pred eecc
Confidence 6543
No 394
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=1.3 Score=55.43 Aligned_cols=286 Identities=16% Similarity=0.085 Sum_probs=169.0
Q ss_pred EEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEe-CCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEE
Q 048801 267 VKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASAS-NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQL 345 (1715)
Q Consensus 267 IrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS-~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~L 345 (1715)
+.+++..+......+.-+. ....++..+++..+.... ....+.+-+............-...-..+++++.+.. .+
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~--vy 89 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNK--VY 89 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCe--EE
Confidence 6666666665555554333 556678888885444433 2234555444311111111111133467788888763 45
Q ss_pred EEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC---CCeEE
Q 048801 346 LSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS---DTFAR 422 (1715)
Q Consensus 346 aSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~---DG~Ir 422 (1715)
++...+..|.+.|..+......+.. ......+++++++..+.++.. ++.+.
T Consensus 90 v~~~~~~~v~vid~~~~~~~~~~~v--------------------------G~~P~~~~~~~~~~~vYV~n~~~~~~~vs 143 (381)
T COG3391 90 VTTGDSNTVSVIDTATNTVLGSIPV--------------------------GLGPVGLAVDPDGKYVYVANAGNGNNTVS 143 (381)
T ss_pred EecCCCCeEEEEcCcccceeeEeee--------------------------ccCCceEEECCCCCEEEEEecccCCceEE
Confidence 5666678899999766554443322 113567999999977666654 68888
Q ss_pred EEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEe
Q 048801 423 VWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWI 502 (1715)
Q Consensus 423 VWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWD 502 (1715)
+.|..+.+. +.....-..+ ..+++.|++ ...+++-..++.|.+.|
T Consensus 144 vid~~t~~~---------~~~~~vG~~P-~~~a~~p~g-------------------------~~vyv~~~~~~~v~vi~ 188 (381)
T COG3391 144 VIDAATNKV---------TATIPVGNTP-TGVAVDPDG-------------------------NKVYVTNSDDNTVSVID 188 (381)
T ss_pred EEeCCCCeE---------EEEEecCCCc-ceEEECCCC-------------------------CeEEEEecCCCeEEEEe
Confidence 888876532 2222222223 788899887 23555666899999999
Q ss_pred cCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC---CeEEEEECCCCce
Q 048801 503 PRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAVDGSL 579 (1715)
Q Consensus 503 l~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D---GtI~IWDl~sg~~ 579 (1715)
..+..... ............-..++++++|.++.+.... +.|.+.|..++..
T Consensus 189 ~~~~~v~~-------------------------~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v 243 (381)
T COG3391 189 TSGNSVVR-------------------------GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV 243 (381)
T ss_pred CCCcceec-------------------------cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence 76532110 0000011122234568999999977665544 5899999988877
Q ss_pred EEE-EecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccc---eEEEEEEcCC
Q 048801 580 VHS-LTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRF---KLVDGKFSPD 641 (1715)
Q Consensus 580 l~t-L~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~---~V~svafSPD 641 (1715)
... +..-......+.++|.+..+.+.-+..+.+.+-|..+......+..+.. .+..+++.+.
T Consensus 244 ~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 244 TATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 765 2222114567889995544444435568899999888887776654433 2444455443
No 395
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.68 E-value=0.14 Score=64.64 Aligned_cols=146 Identities=15% Similarity=0.080 Sum_probs=81.6
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL 318 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~ 318 (1715)
+-...-....+.++|+|++++.++ ||...|+.....+.... +.-...+|.+.++ +|+-...++|.|+.--...
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-
T ss_pred CCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecCcc-EEEEECCCeEEEEEcCccc
Confidence 333444577899999999999954 67888888544444332 2334678988554 6666668889997433333
Q ss_pred ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCc
Q 048801 319 PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH 398 (1715)
Q Consensus 319 ~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~ 398 (1715)
....+.. ...+..|-. |. +|+..+ ++.|.+||+.+++.+.++.. .
T Consensus 101 ~~k~i~~-~~~~~~If~---G~---LL~~~~-~~~i~~yDw~~~~~i~~i~v---------------------------~ 145 (443)
T PF04053_consen 101 VVKSIKL-PFSVEKIFG---GN---LLGVKS-SDFICFYDWETGKLIRRIDV---------------------------S 145 (443)
T ss_dssp TT------SS-EEEEE----SS---SEEEEE-TTEEEEE-TTT--EEEEESS----------------------------
T ss_pred cceEEcC-CcccceEEc---Cc---EEEEEC-CCCEEEEEhhHcceeeEEec---------------------------C
Confidence 3333331 123444433 44 444444 44899999999998877743 1
Q ss_pred ceeEEEEccCCCeEEEecCCCeEEEEeCC
Q 048801 399 QILCCAYNANGTVFVTGSSDTFARVWSAC 427 (1715)
Q Consensus 399 ~VtslafSpdG~~LatGs~DG~IrVWDl~ 427 (1715)
.|..+.|+++|.+++..+. ..+.|++..
T Consensus 146 ~vk~V~Ws~~g~~val~t~-~~i~il~~~ 173 (443)
T PF04053_consen 146 AVKYVIWSDDGELVALVTK-DSIYILKYN 173 (443)
T ss_dssp E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred CCcEEEEECCCCEEEEEeC-CeEEEEEec
Confidence 2789999999999998875 467777654
No 396
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.66 E-value=0.31 Score=59.74 Aligned_cols=88 Identities=15% Similarity=0.043 Sum_probs=49.1
Q ss_pred EEcCCCCEEEEEeC-CC--cEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCC
Q 048801 250 IFDRSGRFVITGSD-DR--LVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGH 326 (1715)
Q Consensus 250 afSpDG~~LaTGS~-DG--tIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH 326 (1715)
+|.+||+.|+.++. || .+.+.|+.+++..+.-.+-........++++++.|+-......|+--|+.+.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 46789976666554 55 4666688888766554432222335667888888877666678999999998776666656
Q ss_pred CCCeEEEEecC
Q 048801 327 TGAVTAIAFSP 337 (1715)
Q Consensus 327 ~~~VtsLafSP 337 (1715)
...+-...|..
T Consensus 122 ~~~~g~gt~v~ 132 (386)
T PF14583_consen 122 DDWKGYGTWVA 132 (386)
T ss_dssp TTEEEEEEEEE
T ss_pred cccccccceee
Confidence 66555556643
No 397
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.65 E-value=0.1 Score=65.73 Aligned_cols=205 Identities=15% Similarity=0.091 Sum_probs=113.1
Q ss_pred eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCC-CcEEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 308 VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD-GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D-GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
.+.+-|.+ |.....+..-...+..-+|+|++..+.++...... ..+.++++.+++.......
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~---------------- 236 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF---------------- 236 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc----------------
Confidence 34444543 66666666566678888999999865444333333 5689999988775433321
Q ss_pred CCCCCCCCCCCcceeEEEEccCCCeEEEe-cCCCe--EEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccc
Q 048801 387 NGPSSSNGLQSHQILCCAYNANGTVFVTG-SSDTF--ARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVAS 463 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSpdG~~LatG-s~DG~--IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as 463 (1715)
...-...+|+|||+.|+.. ..||. |.++|+.+.. +..+....+.-..-.|+|+|
T Consensus 237 ----------~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~----------~~~Lt~~~gi~~~Ps~spdG--- 293 (425)
T COG0823 237 ----------NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN----------LPRLTNGFGINTSPSWSPDG--- 293 (425)
T ss_pred ----------CCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc----------ceecccCCccccCccCCCCC---
Confidence 1123346799999876654 44565 5555665532 11122222222255677877
Q ss_pred cccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccC
Q 048801 464 RSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLP 543 (1715)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~ 543 (1715)
...+.+.+..|.-.||-.... +....++..
T Consensus 294 ----------------------~~ivf~Sdr~G~p~I~~~~~~----------------------------g~~~~riT~ 323 (425)
T COG0823 294 ----------------------SKIVFTSDRGGRPQIYLYDLE----------------------------GSQVTRLTF 323 (425)
T ss_pred ----------------------CEEEEEeCCCCCcceEEECCC----------------------------CCceeEeec
Confidence 345556667776666543310 111112222
Q ss_pred CCCCeeEEEeCCCCCEEEEEecC-Ce--EEEEECCCCceEEEEecCCCCeEEEEEccCCCcEE
Q 048801 544 TPRGVNMIVWSLDNRFVLAAIMD-CR--ICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIA 603 (1715)
Q Consensus 544 h~~~VtslafSPDG~~LaTgs~D-Gt--I~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lL 603 (1715)
..+.-..-.|||||++|+..+.. |. |.+.++.++..+..+. +........|.+++..++
T Consensus 324 ~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 324 SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIM 385 (425)
T ss_pred cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEE
Confidence 22222367899999999887743 33 6677776665444433 222233445666333333
No 398
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.63 E-value=0.023 Score=72.05 Aligned_cols=218 Identities=11% Similarity=0.031 Sum_probs=123.4
Q ss_pred CCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccc
Q 048801 396 QSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 396 h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
+...|.--+++..+.+++.|+.-|.+++|+-..+.. ......+..+.+..+..++..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~--------~~~~~~~~~~~~~~~~vs~~e--------------- 88 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM--------RKLKNEGATGITCVRSVSSVE--------------- 88 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhh--------hcccccCccceEEEEEecchh---------------
Confidence 344456666777899999999999999999876542 122223344455556666653
Q ss_pred cccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC
Q 048801 476 VPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL 555 (1715)
Q Consensus 476 ~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP 555 (1715)
.++|.|+..|.|.++-+..+.. +..... ..--..|...|++++|++
T Consensus 89 -----------~lvAagt~~g~V~v~ql~~~~p----------------~~~~~~-------t~~d~~~~~rVTal~Ws~ 134 (726)
T KOG3621|consen 89 -----------YLVAAGTASGRVSVFQLNKELP----------------RDLDYV-------TPCDKSHKCRVTALEWSK 134 (726)
T ss_pred -----------HhhhhhcCCceEEeehhhccCC----------------Ccceee-------ccccccCCceEEEEEecc
Confidence 5778888888998886654210 000000 000112778899999999
Q ss_pred CCCEEEEEecCCeEEEEECCCC----ceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccc
Q 048801 556 DNRFVLAAIMDCRICVWNAVDG----SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRF 631 (1715)
Q Consensus 556 DG~~LaTgs~DGtI~IWDl~sg----~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~ 631 (1715)
++..|++|...|.|.+-.+.+. -..+.+..-.+.|..|... ...+|++...- -.+++...++..+.-...+.
T Consensus 135 ~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~r--~~Lc~tE~eti~QIG~k~R~ 210 (726)
T KOG3621|consen 135 NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLTR--CILCQTEAETITQIGKKPRK 210 (726)
T ss_pred cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhhhh--hheeecchhHHHHhcCCCcC
Confidence 9999999999999998887762 1122333345666666653 45566554432 23444433321111110111
Q ss_pred e--EEEEEEcCC-----CCEEEEEeCCCeEEEEECCCCccccccccceeec
Q 048801 632 K--LVDGKFSPD-----GTSIVLSDDVGQIYLLNTGQGESQKDAKYDQFFL 675 (1715)
Q Consensus 632 ~--V~svafSPD-----G~~LAsgs~DG~I~IWdl~tGe~~k~~~~~~~fs 675 (1715)
. -...+|-|. ...|+++--.++++.-|+ .|+.+++..+...+.
T Consensus 211 ~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~-~G~V~~Thqfk~ala 260 (726)
T KOG3621|consen 211 SLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADF-AGEVIKTHQFKDALA 260 (726)
T ss_pred CccccceEEeeccccCCCceEEEecCCCceEEeec-ceeEEEeeehhhhhc
Confidence 1 223344443 234555444334433343 466665555544444
No 399
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.62 E-value=1.1 Score=56.43 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=45.7
Q ss_pred EEEcCCCCEEEEEeCC----------C-cEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC
Q 048801 249 AIFDRSGRFVITGSDD----------R-LVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP 315 (1715)
Q Consensus 249 VafSpDG~~LaTGS~D----------G-tIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~ 315 (1715)
++.+|.|..||...++ . .|.||+.. |+.+.++.--.+.|.++.|+.+. .|++...||.++++|+.
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 3445555555554333 2 59999865 66777765445899999999865 55566799999999985
No 400
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.56 E-value=0.23 Score=61.98 Aligned_cols=271 Identities=12% Similarity=0.097 Sum_probs=133.9
Q ss_pred CeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC
Q 048801 329 AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN 408 (1715)
Q Consensus 329 ~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd 408 (1715)
.|+.+.|+++.. -|+++...|.|.||.+...+.-.....+ .-....+.+
T Consensus 3 ~v~~vs~a~~t~---Elav~~~~GeVv~~k~~~n~~~~~~~~~---------------------------~~~~~~~~~- 51 (395)
T PF08596_consen 3 SVTHVSFAPETL---ELAVGLESGEVVLFKFGKNQNYGNREQP---------------------------PDLDYNFRR- 51 (395)
T ss_dssp -EEEEEEETTTT---EEEEEETTS-EEEEEEEE---------------------------------------------S-
T ss_pred eEEEEEecCCCc---eEEEEccCCcEEEEEcccCCCCCccCCC---------------------------cccCccccc-
Confidence 488999999876 7999999999999987654321100000 000011110
Q ss_pred CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCce
Q 048801 409 GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN 488 (1715)
Q Consensus 409 G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~ 488 (1715)
+ ...++.-.+-|+.........+...+...+....++|++++.+.-| +
T Consensus 52 ---~--~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iG---------------------------F 99 (395)
T PF08596_consen 52 ---F--SLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIG---------------------------F 99 (395)
T ss_dssp -------GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTS---------------------------E
T ss_pred ---c--cccCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCCCc---------------------------E
Confidence 0 0011122233433221111112244455666668899999998754 8
Q ss_pred EEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-----CC---CEE
Q 048801 489 IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-----DN---RFV 560 (1715)
Q Consensus 489 LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-----DG---~~L 560 (1715)
++.|..+|.+.|.|++....+....- .. ..........|+++.|+- |+ -.|
T Consensus 100 vaigy~~G~l~viD~RGPavI~~~~i-~~--------------------~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 100 VAIGYESGSLVVIDLRGPAVIYNENI-RE--------------------SFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEEG-GG----------------------T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred EEEEecCCcEEEEECCCCeEEeeccc-cc--------------------cccccccccCeeEEEEEEEecCCCcccceEE
Confidence 99999999999999987554432100 00 000111234577777762 33 468
Q ss_pred EEEecCCeEEEEECC--C-CceE----EEEecCCCCeEEEE-EccCC--------------------CcEEEEEeCCCcE
Q 048801 561 LAAIMDCRICVWNAV--D-GSLV----HSLTGHSASSYVLD-VHPFN--------------------PRIAMSAGYDGRT 612 (1715)
Q Consensus 561 aTgs~DGtI~IWDl~--s-g~~l----~tL~gH~~~V~sLa-fSP~d--------------------g~lLaSgs~DGtI 612 (1715)
++|...|.+.+|.+. . +... .....+.+.|..|. |+.+. +.+++.+ .+..|
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~i 237 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDI 237 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccce
Confidence 889999999999774 1 2221 12224566666655 32211 1244444 46679
Q ss_pred EEEECCCCceEEEEEcccceEEEEEE-----cCCCCEEEEEeCCCeEEEEECCCCcccccccc----------ceeecCC
Q 048801 613 IVWDIWEGTPIRIYEIGRFKLVDGKF-----SPDGTSIVLSDDVGQIYLLNTGQGESQKDAKY----------DQFFLGD 677 (1715)
Q Consensus 613 ~VWDl~tgk~l~tl~~h~~~V~svaf-----SPDG~~LAsgs~DG~I~IWdl~tGe~~k~~~~----------~~~fs~D 677 (1715)
+|+...+.+..+...........+.+ ...+..|++-..+|.|++|.+..-+.+..... ...|+.+
T Consensus 238 rv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~ 317 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRN 317 (395)
T ss_dssp EEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TT
T ss_pred EEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCC
Confidence 99999888877666523223334455 34677888889999999999987766543322 2345556
Q ss_pred CccEEEc
Q 048801 678 YRPLIRD 684 (1715)
Q Consensus 678 ~r~L~~d 684 (1715)
|.-+.+.
T Consensus 318 Gdi~~~~ 324 (395)
T PF08596_consen 318 GDIFYWT 324 (395)
T ss_dssp S-EEEE-
T ss_pred CCEEEEe
Confidence 6655444
No 401
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.54 E-value=0.92 Score=57.07 Aligned_cols=254 Identities=15% Similarity=0.163 Sum_probs=123.7
Q ss_pred eEEEEECCCCCEEEEE-eCCC----eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecC----------CC
Q 048801 288 ITDLAVSSNNTLVASA-SNDF----VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD----------DG 352 (1715)
Q Consensus 288 VtsLafSpDg~lLASG-S~DG----tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~----------DG 352 (1715)
+..+++||||++||.+ +..| .|+|.|+.+|+.+...... .....+.|.+++.. ++.+... ..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~--~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKG--FFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSE--EEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCE--EEEEEeCcccccccCCCCc
Confidence 3467899999998865 3334 5999999999766532111 11234999999874 2333322 22
Q ss_pred cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC---C-CeEEEEeCCC
Q 048801 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS---D-TFARVWSACK 428 (1715)
Q Consensus 353 tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~---D-G~IrVWDl~t 428 (1715)
.|.+|.+.+......+...... .......+..++++++|+.... + ..+.+.++..
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~---------------------~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPD---------------------EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TT---------------------CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEEEEECCCChHhCeeEEeecC---------------------CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 3777777665433222111110 0112567889999998775432 2 3567777754
Q ss_pred CCccCCCCCceeeeeecCCCCCe-eEEEEccCcccccccccccccccccccccCCcccCceEEEEc---CCCeEEEEecC
Q 048801 429 SSVEDSEQPIHELDVLSGHENDV-NYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS---RDGSAIIWIPR 504 (1715)
Q Consensus 429 ~~~~~~~~~~~~l~~l~gH~~~V-~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS---~DGsIrIWDl~ 504 (1715)
.. .+......+......+ ..+....+ .+++... ..+.|...++.
T Consensus 262 ~~-----~~~~~~~~l~~~~~~~~~~v~~~~~---------------------------~~yi~Tn~~a~~~~l~~~~l~ 309 (414)
T PF02897_consen 262 GG-----SPDAKPKLLSPREDGVEYYVDHHGD---------------------------RLYILTNDDAPNGRLVAVDLA 309 (414)
T ss_dssp TT-----TSS-SEEEEEESSSS-EEEEEEETT---------------------------EEEEEE-TT-TT-EEEEEETT
T ss_pred cC-----CCcCCcEEEeCCCCceEEEEEccCC---------------------------EEEEeeCCCCCCcEEEEeccc
Confidence 21 0111122222222222 22322211 2333222 23455555554
Q ss_pred CCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEE-EecCC--eEEEEECCCCceEE
Q 048801 505 SRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLA-AIMDC--RICVWNAVDGSLVH 581 (1715)
Q Consensus 505 t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaT-gs~DG--tI~IWDl~sg~~l~ 581 (1715)
.... ..|. ..+..+...+.-..+...+.+|+. ...++ .|+++++..+....
T Consensus 310 ~~~~----~~~~----------------------~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~ 363 (414)
T PF02897_consen 310 DPSP----AEWW----------------------TVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESR 363 (414)
T ss_dssp STSG----GGEE----------------------EEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEE
T ss_pred cccc----ccce----------------------eEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEe
Confidence 3210 0011 123334443333333334444444 44444 58899998444444
Q ss_pred EEec-CCCCeEEEEEccCCCcEEEEEeC---CCcEEEEECCCCceE
Q 048801 582 SLTG-HSASSYVLDVHPFNPRIAMSAGY---DGRTIVWDIWEGTPI 623 (1715)
Q Consensus 582 tL~g-H~~~V~sLafSP~dg~lLaSgs~---DGtI~VWDl~tgk~l 623 (1715)
.+.. -.+.|..+...+....+.++.+. -++|..||+.+++..
T Consensus 364 ~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 364 EIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred eecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 4443 34445666655645555554432 357888899888754
No 402
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.50 E-value=0.091 Score=69.80 Aligned_cols=136 Identities=12% Similarity=0.104 Sum_probs=94.0
Q ss_pred eCCCcEEEEeCCCCcEEEEecCCCCC-eEEEEECC-----CCCEEEEEeCCCeeEEEECCCC-CceEEEe----CCCCCe
Q 048801 262 SDDRLVKIWSMETAFCLASCRGHEGD-ITDLAVSS-----NNTLVASASNDFVIRVWRLPDG-LPISVLR----GHTGAV 330 (1715)
Q Consensus 262 S~DGtIrIWDl~tgk~l~tL~gHs~~-VtsLafSp-----Dg~lLASGS~DGtIrVWDl~tg-~~l~~L~----gH~~~V 330 (1715)
.....|+-.|++.|+.+..+..|... |..++-.. +..-.+.|-.+..+..||.+-. ..+..-. ......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 34578888999999999999887754 65554321 1234566777889999998753 2222111 233567
Q ss_pred EEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCC
Q 048801 331 TAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT 410 (1715)
Q Consensus 331 tsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~ 410 (1715)
+|++-+.+| +||+|+.+|.||+||- .|.... ....+-+.+|.+|..+.||+
T Consensus 581 s~~aTt~~G----~iavgs~~G~IRLyd~-~g~~AK------------------------T~lp~lG~pI~~iDvt~DGk 631 (794)
T PF08553_consen 581 SCFATTEDG----YIAVGSNKGDIRLYDR-LGKRAK------------------------TALPGLGDPIIGIDVTADGK 631 (794)
T ss_pred eEEEecCCc----eEEEEeCCCcEEeecc-cchhhh------------------------hcCCCCCCCeeEEEecCCCc
Confidence 888888887 7999999999999983 221110 11122367899999999999
Q ss_pred eEEEecCCCeEEEEeCC
Q 048801 411 VFVTGSSDTFARVWSAC 427 (1715)
Q Consensus 411 ~LatGs~DG~IrVWDl~ 427 (1715)
+|++.+ +..|.+++..
T Consensus 632 wilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 632 WILATC-KTYLLLIDTL 647 (794)
T ss_pred EEEEee-cceEEEEEEe
Confidence 998776 5778888763
No 403
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.50 E-value=0.0015 Score=81.18 Aligned_cols=206 Identities=14% Similarity=0.114 Sum_probs=124.1
Q ss_pred CCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc
Q 048801 328 GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA 407 (1715)
Q Consensus 328 ~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp 407 (1715)
..+.|+++.-+... ..++.|..+|.|.+-.++...... ......+....++++|++
T Consensus 57 qy~kcva~~y~~d~-cIlavG~atG~I~l~s~r~~hdSs-----------------------~E~tp~~ar~Ct~lAwne 112 (783)
T KOG1008|consen 57 QYVKCVASFYGNDR-CILAVGSATGNISLLSVRHPHDSS-----------------------AEVTPGYARPCTSLAWNE 112 (783)
T ss_pred CCceeehhhcCCch-hhhhhccccCceEEeecCCccccc-----------------------ceeccccccccccccccc
Confidence 45667776655442 267888899999998776543221 111223455689999998
Q ss_pred -CCCeEEEec----CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCC
Q 048801 408 -NGTVFVTGS----SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNS 482 (1715)
Q Consensus 408 -dG~~LatGs----~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s 482 (1715)
|.++||+|- .|..+.|||+.+.-. .|........+......+++|..+
T Consensus 113 LDtn~LAagldkhrnds~~~Iwdi~s~lt----vPke~~~fs~~~l~gqns~cwlrd----------------------- 165 (783)
T KOG1008|consen 113 LDTNHLAAGLDKHRNDSSLKIWDINSLLT----VPKESPLFSSSTLDGQNSVCWLRD----------------------- 165 (783)
T ss_pred ccHHHHHhhhhhhcccCCccceecccccC----CCccccccccccccCccccccccC-----------------------
Confidence 567788774 367899999987521 111111111112233345555433
Q ss_pred cccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CCCEEE
Q 048801 483 WFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVL 561 (1715)
Q Consensus 483 ~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~La 561 (1715)
++.+++|.....+.++|++..... ...-....+..+.++| .+.+++
T Consensus 166 ---~klvlaGm~sr~~~ifdlRqs~~~------------------------------~~svnTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 166 ---TKLVLAGMTSRSVHIFDLRQSLDS------------------------------VSSVNTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred ---cchhhcccccchhhhhhhhhhhhh------------------------------hhhhhhhhcccceecCCCCCcee
Confidence 367888888889999998731100 0000112355677788 667777
Q ss_pred EEecCCeEEEEEC-CCCc-eEEEEecCC----CCeEEEEEccCCCcEEEEEeCC-CcEEEEECC
Q 048801 562 AAIMDCRICVWNA-VDGS-LVHSLTGHS----ASSYVLDVHPFNPRIAMSAGYD-GRTIVWDIW 618 (1715)
Q Consensus 562 Tgs~DGtI~IWDl-~sg~-~l~tL~gH~----~~V~sLafSP~dg~lLaSgs~D-GtI~VWDl~ 618 (1715)
+-. ||.|-+||. ..-+ ++..+.... ..+..++|+|....++++...| ++|+++|+.
T Consensus 213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 554 999999993 3222 222222222 2488999999776777777654 789999974
No 404
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.45 E-value=0.0071 Score=46.37 Aligned_cols=38 Identities=32% Similarity=0.726 Sum_probs=34.8
Q ss_pred eeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 048801 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWS 271 (1715)
Q Consensus 234 k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWD 271 (1715)
+.+..+.+|...|+++.|.+++.++++++.|+.|++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45677889999999999999999999999999999996
No 405
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=96.41 E-value=0.0022 Score=89.35 Aligned_cols=82 Identities=21% Similarity=0.312 Sum_probs=70.0
Q ss_pred ccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHH
Q 048801 1627 VSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRD 1706 (1715)
Q Consensus 1627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~ 1706 (1715)
+.++.....|..+++.-.-++|.-.+.-||++.|||.+|.-++|...+.+.-|+.+||.||++||++ ++|.+..-.|..
T Consensus 1313 ~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i~~ag~~l~~ 1391 (1404)
T KOG1245|consen 1313 LVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEIGRAGTCLRR 1391 (1404)
T ss_pred HHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhhhhhcchHHH
Confidence 3445666667777777777777777777778999999999999999999999999999999999999 899999888888
Q ss_pred HHH
Q 048801 1707 WFN 1709 (1715)
Q Consensus 1707 ~~~ 1709 (1715)
.|-
T Consensus 1392 ff~ 1394 (1404)
T KOG1245|consen 1392 FFH 1394 (1404)
T ss_pred HHH
Confidence 776
No 406
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.31 E-value=7.6 Score=52.68 Aligned_cols=112 Identities=10% Similarity=-0.004 Sum_probs=73.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCC--------eEEEEEC----------------CCCCEEEEEeCCCeeE
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLASCRGHEGD--------ITDLAVS----------------SNNTLVASASNDFVIR 310 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~--------VtsLafS----------------pDg~lLASGS~DGtIr 310 (1715)
+..|+.++.++.|.-.|..||+.+-.+.-.... ...+++. .++..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557778888899999999999988776532211 1122221 1345788899999999
Q ss_pred EEECCCCCceEEEeCCCCCeE-------------EEEecCC--CCcceEEEEecC----------CCcEEEEecCCCCCc
Q 048801 311 VWRLPDGLPISVLRGHTGAVT-------------AIAFSPR--PSAIYQLLSSSD----------DGTCRIWDARYSQYS 365 (1715)
Q Consensus 311 VWDl~tg~~l~~L~gH~~~Vt-------------sLafSPd--g~~~~~LaSgS~----------DGtVrIWDl~tg~~l 365 (1715)
-.|..+|+.+..+. ..+.|. .+.-.|- +. .+++|+. +|.|+-+|+.+|+.+
T Consensus 274 ALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g---~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 274 ALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGT---TVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECC---EEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 99999999887763 222221 1111110 11 4555532 688999999999988
Q ss_pred ceecC
Q 048801 366 PRIYL 370 (1715)
Q Consensus 366 ~~i~~ 370 (1715)
-.+..
T Consensus 350 W~~~~ 354 (764)
T TIGR03074 350 WAWDP 354 (764)
T ss_pred eEEec
Confidence 77764
No 407
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.17 E-value=3.2 Score=48.98 Aligned_cols=255 Identities=14% Similarity=0.145 Sum_probs=128.0
Q ss_pred CCCCEEEEEeCCCeeEEEECCC-CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCC
Q 048801 295 SNNTLVASASNDFVIRVWRLPD-GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKP 373 (1715)
Q Consensus 295 pDg~lLASGS~DGtIrVWDl~t-g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~ 373 (1715)
..++.|+.|+.+| |.++++.. ........ ...|..|...++-+ .|++-+ |+.|.++++..-...........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~---~llvLs-d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELN---LLLVLS-DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccC---EEEEEc-CCccEEEEchhhccccccccccc
Confidence 4678999999998 89999833 33333332 33499999999876 444443 49999999876543221100000
Q ss_pred CCCccCccCCCCCCCCCCCCCCCCcceeEEE--EccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCc-eeeeeecCCCC
Q 048801 374 PDAITGKSNVPSNNGPSSSNGLQSHQILCCA--YNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPI-HELDVLSGHEN 449 (1715)
Q Consensus 374 ~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsla--fSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~-~~l~~l~gH~~ 449 (1715)
.. + ............+..++ -...+ ..|+++ ....|.+|....... .. .....+.- ..
T Consensus 78 ~~---~--------~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~-----~f~~~~ke~~l-p~ 139 (275)
T PF00780_consen 78 PK---S--------RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRN-----SFSKLLKEISL-PD 139 (275)
T ss_pred cc---c--------ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcc-----cccceeEEEEc-CC
Confidence 00 0 00000011122233333 11233 445544 455888888865311 01 22233222 25
Q ss_pred CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCC
Q 048801 450 DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLP 529 (1715)
Q Consensus 450 ~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~ 529 (1715)
.+.+++|.+ +.|+.|..++ ..+.|+.++..........
T Consensus 140 ~~~~i~~~~----------------------------~~i~v~~~~~-f~~idl~~~~~~~l~~~~~------------- 177 (275)
T PF00780_consen 140 PPSSIAFLG----------------------------NKICVGTSKG-FYLIDLNTGSPSELLDPSD------------- 177 (275)
T ss_pred CcEEEEEeC----------------------------CEEEEEeCCc-eEEEecCCCCceEEeCccC-------------
Confidence 677888874 4666666554 5667777543211100000
Q ss_pred CCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEE--EEecCCCCeEEEEEccCCCcEEEEEe
Q 048801 530 PQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVH--SLTGHSASSYVLDVHPFNPRIAMSAG 607 (1715)
Q Consensus 530 ~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~--tL~gH~~~V~sLafSP~dg~lLaSgs 607 (1715)
.............++..+.++ ++.+|++. +..-.+.| ..|+..+ .+.-.. ...++++.. +.++ ..+
T Consensus 178 ----~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~-~~G~~~r~~~i~W~~-~p~~~~~~~--pyli-~~~ 245 (275)
T PF00780_consen 178 ----SSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVN-KNGEPSRKSTIQWSS-APQSVAYSS--PYLI-AFS 245 (275)
T ss_pred ----CcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEc-CCCCcCcccEEEcCC-chhEEEEEC--CEEE-EEC
Confidence 000001111122334444444 35666643 32333334 3554443 333323 344555532 3444 333
Q ss_pred CCCcEEEEECCCCceEEEEEcc
Q 048801 608 YDGRTIVWDIWEGTPIRIYEIG 629 (1715)
Q Consensus 608 ~DGtI~VWDl~tgk~l~tl~~h 629 (1715)
++.|.||++.+|++++++...
T Consensus 246 -~~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 246 -SNSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred -CCEEEEEECcCCcEEEEEECC
Confidence 466999999999999998743
No 408
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.11 E-value=0.014 Score=44.75 Aligned_cols=39 Identities=36% Similarity=0.604 Sum_probs=35.0
Q ss_pred CcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 275 AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 275 gk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
+.++..+..|...|.++.|++++.++++++.|+.|++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677788999999999999999999999999999996
No 409
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.11 E-value=2 Score=54.06 Aligned_cols=100 Identities=19% Similarity=0.189 Sum_probs=59.9
Q ss_pred CCeEEEEECCCCce---EEEEecCCCCeEEEEEccCCCcEEEEEeCCC--cEEEEECCCCceEEEEEc-ccceEEEEEEc
Q 048801 566 DCRICVWNAVDGSL---VHSLTGHSASSYVLDVHPFNPRIAMSAGYDG--RTIVWDIWEGTPIRIYEI-GRFKLVDGKFS 639 (1715)
Q Consensus 566 DGtI~IWDl~sg~~---l~tL~gH~~~V~sLafSP~dg~lLaSgs~DG--tI~VWDl~tgk~l~tl~~-h~~~V~svafS 639 (1715)
++.|...++.+... ...+..|...+.-..+...++.++++.-.++ .|+++++..+.....+.. ..+.|..+...
T Consensus 300 ~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~ 379 (414)
T PF02897_consen 300 NGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGD 379 (414)
T ss_dssp T-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-
T ss_pred CcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCC
Confidence 45777778877653 3356666664444444444677887777776 588899974555554443 34446666666
Q ss_pred CCCCEEEEE--e--CCCeEEEEECCCCccc
Q 048801 640 PDGTSIVLS--D--DVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 640 PDG~~LAsg--s--~DG~I~IWdl~tGe~~ 665 (1715)
+++..|... + .-++|+.||+.+|+..
T Consensus 380 ~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 380 FDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred CCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 777665543 2 2368999999998753
No 410
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.026 Score=70.84 Aligned_cols=93 Identities=12% Similarity=0.071 Sum_probs=76.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeE-EEEECCCCCEEEEEeCCCeeEEEECCCCCceEE
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDIT-DLAVSSNNTLVASASNDFVIRVWRLPDGLPISV 322 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~Vt-sLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~ 322 (1715)
..|.-+.|+|.-.+||++..+|.|.+..+. .+.+.++.-|...++ +++|.|||++||.|-.||+|++.|+.+|..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 456778899999999999999999999988 677788887777777 999999999999999999999999999877655
Q ss_pred E-eCCCCCeEEEEecC
Q 048801 323 L-RGHTGAVTAIAFSP 337 (1715)
Q Consensus 323 L-~gH~~~VtsLafSP 337 (1715)
. ..-...|.++-|.+
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 2 12334555555553
No 411
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=3.1 Score=52.04 Aligned_cols=267 Identities=10% Similarity=0.046 Sum_probs=154.4
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEE-EEEeCCCeeEEEECCCCCceEE
Q 048801 245 AVYCAIFDRSGRFVITGS-DDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLV-ASASNDFVIRVWRLPDGLPISV 322 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS-~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lL-ASGS~DGtIrVWDl~tg~~l~~ 322 (1715)
....+++.++|..+.... ....+.+.+................-..+++++.+..+ ++...++.|.+.|..+...+..
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 445667788885444332 22245555544222222222221344578888888744 4445568999999877776666
Q ss_pred EeCCCCCeEEEEecCCCCcceEEEEec-CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCccee
Q 048801 323 LRGHTGAVTAIAFSPRPSAIYQLLSSS-DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQIL 401 (1715)
Q Consensus 323 L~gH~~~VtsLafSPdg~~~~~LaSgS-~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vt 401 (1715)
..--. ....++++++++.. +++-.. .++++.+.|-.++..+....... .+ .
T Consensus 112 ~~vG~-~P~~~~~~~~~~~v-YV~n~~~~~~~vsvid~~t~~~~~~~~vG~-------------------------~P-~ 163 (381)
T COG3391 112 IPVGL-GPVGLAVDPDGKYV-YVANAGNGNNTVSVIDAATNKVTATIPVGN-------------------------TP-T 163 (381)
T ss_pred eeecc-CCceEEECCCCCEE-EEEecccCCceEEEEeCCCCeEEEEEecCC-------------------------Cc-c
Confidence 54222 66789999999742 222222 47888888888776655432210 11 7
Q ss_pred EEEEccCCCeEEEe-cCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccccccc
Q 048801 402 CCAYNANGTVFVTG-SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFK 480 (1715)
Q Consensus 402 slafSpdG~~LatG-s~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~ 480 (1715)
.++++|+|..+.+. ..++.|.+.|.....+.. ......+ .-...-..+.+.+++
T Consensus 164 ~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~----~~~~~P~~i~v~~~g-------------------- 218 (381)
T COG3391 164 GVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLV----GVGTGPAGIAVDPDG-------------------- 218 (381)
T ss_pred eEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccccccc----ccCCCCceEEECCCC--------------------
Confidence 89999999855554 478999999976543211 1110011 111223456677766
Q ss_pred CCcccCceEEEEcCC--CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC
Q 048801 481 NSWFCHDNIVTCSRD--GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR 558 (1715)
Q Consensus 481 ~s~~~~~~LaSgS~D--GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~ 558 (1715)
....++...+ +.+.+.|..++...... ...... ....+.++|+|.
T Consensus 219 -----~~~yV~~~~~~~~~v~~id~~~~~v~~~~---------------------------~~~~~~-~~~~v~~~p~g~ 265 (381)
T COG3391 219 -----NRVYVANDGSGSNNVLKIDTATGNVTATD---------------------------LPVGSG-APRGVAVDPAGK 265 (381)
T ss_pred -----CEEEEEeccCCCceEEEEeCCCceEEEec---------------------------cccccC-CCCceeECCCCC
Confidence 2234444333 67777777654311110 000111 344578999999
Q ss_pred EEEEEec-CCeEEEEECCCCceEEEEecCCC---CeEEEEEcc
Q 048801 559 FVLAAIM-DCRICVWNAVDGSLVHSLTGHSA---SSYVLDVHP 597 (1715)
Q Consensus 559 ~LaTgs~-DGtI~IWDl~sg~~l~tL~gH~~---~V~sLafSP 597 (1715)
++.+... .+.|.+.|..+......+..... .+..+++.+
T Consensus 266 ~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 266 AAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred EEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 9988744 48899999888877776654332 344555544
No 412
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.83 E-value=0.51 Score=55.23 Aligned_cols=171 Identities=12% Similarity=0.136 Sum_probs=97.6
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCcEEEEecCC-CCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 236 IKKLRGHRDAVYCAIFDRSGRFVI-TGSDDRLVKIWSMETAFCLASCRGH-EGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpDG~~La-TGS~DGtIrIWDl~tgk~l~tL~gH-s~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
.+.|.|-...|..++|+|+.+.|+ +....+.|...+. +|+.++.+.-. .+..-.|++..++.++++.-.++.+.+.+
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 345777777899999999866555 5556788888886 47888776533 46788999998887777765689999998
Q ss_pred CCCCC-c--e---EEEe-----CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCC---CcceecCCCCCCCccC
Q 048801 314 LPDGL-P--I---SVLR-----GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQ---YSPRIYLPKPPDAITG 379 (1715)
Q Consensus 314 l~tg~-~--l---~~L~-----gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~---~l~~i~~~~~~~~i~g 379 (1715)
+.... . . ..+. .+...+-.|+|.+.+. .|+.+-......||.+.... .+...... .
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~---~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~-------~ 162 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN---RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQ-------D 162 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTT---EEEEEEESSSEEEEEEESTT-SS--EEEE-H-------H
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCC---EEEEEeCCCChhhEEEccccCccceeecccc-------c
Confidence 84321 1 1 1121 2446689999999877 56666677777777665311 10000000 0
Q ss_pred ccCCCCCCCCCCCCCCCCcceeEEEEccC-CCeEEEecCCCeEEEEeCC
Q 048801 380 KSNVPSNNGPSSSNGLQSHQILCCAYNAN-GTVFVTGSSDTFARVWSAC 427 (1715)
Q Consensus 380 ~~~~~~~~~~~~~~~~h~~~VtslafSpd-G~~LatGs~DG~IrVWDl~ 427 (1715)
. ......-..+.+++++|. |.+++.......|.++|..
T Consensus 163 ~----------~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 163 L----------DDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ 201 (248)
T ss_dssp H----------H-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT
T ss_pred c----------ccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC
Confidence 0 001112234788899885 5677777788888888853
No 413
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=95.80 E-value=0.017 Score=73.70 Aligned_cols=106 Identities=19% Similarity=0.232 Sum_probs=86.4
Q ss_pred CCCChHHHHHHhhhHHHhhhhc--cccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 048801 1606 PEIDSESRDKLLSSFNKLEQSV--SRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVM 1683 (1715)
Q Consensus 1606 ~~i~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~ 1683 (1715)
|-|++..+.++...|.-+.+.. +-.+-+.-|.++=.-...+.|......||.+..||+|+...=|++++-+.-|+.+|
T Consensus 47 p~i~~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm 126 (629)
T KOG1827|consen 47 PVIDPPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLM 126 (629)
T ss_pred cccChHHHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4567776666665555554432 34444455666666667788999999999999999999999999999999999999
Q ss_pred HhhhhhccCCChHHHHHHHHHHHHHHHH
Q 048801 1684 LSNAESYFIKNAALSAKVERLRDWFNRT 1711 (1715)
Q Consensus 1684 ~~Na~~~n~~~~~i~~~~~~l~~~~~~~ 1711 (1715)
++||++||.+++.|.++|..|.+-|...
T Consensus 127 ~ena~~~n~~ds~~~~~s~~l~~~~~~~ 154 (629)
T KOG1827|consen 127 TENARLYNRPDSLIYKDSGELEKYFISL 154 (629)
T ss_pred HHHHHHhcCcchhhhhhhhhhhcchhhh
Confidence 9999999999999999999999988763
No 414
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.63 E-value=2.5 Score=51.16 Aligned_cols=231 Identities=12% Similarity=0.060 Sum_probs=126.1
Q ss_pred EECCCCCE-EEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecC
Q 048801 292 AVSSNNTL-VASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYL 370 (1715)
Q Consensus 292 afSpDg~l-LASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~ 370 (1715)
.|.++... +.+--..+.|.-|+..++.. ..+. +.+.+.++.....+. .|+++. .| +.+++..++.....+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g---~Lv~~~-~g-~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGG---RLIACE-HG-VRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCC---eEEEEc-cc-cEEEeccCCceeEEecc
Confidence 46666664 44445577888888876643 3333 333445544444443 344443 33 56667655543222211
Q ss_pred CCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-----------CCeEEEEeCCCCCccCCCCCce
Q 048801 371 PKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-----------DTFARVWSACKSSVEDSEQPIH 439 (1715)
Q Consensus 371 ~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-----------DG~IrVWDl~t~~~~~~~~~~~ 439 (1715)
... .........+...|+|.+.++... -|.|+.++. .+ .
T Consensus 104 ~~~--------------------~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g---------~ 153 (307)
T COG3386 104 PED--------------------GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG---------G 153 (307)
T ss_pred ccC--------------------CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CC---------C
Confidence 110 011233556778888876665433 122333332 11 2
Q ss_pred eeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccc
Q 048801 440 ELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAY 519 (1715)
Q Consensus 440 ~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~ 519 (1715)
....+..+-..-+.|+|+|++ ..++++=+..+.|..|++.... +....
T Consensus 154 ~~~l~~~~~~~~NGla~SpDg-------------------------~tly~aDT~~~~i~r~~~d~~~--g~~~~----- 201 (307)
T COG3386 154 VVRLLDDDLTIPNGLAFSPDG-------------------------KTLYVADTPANRIHRYDLDPAT--GPIGG----- 201 (307)
T ss_pred EEEeecCcEEecCceEECCCC-------------------------CEEEEEeCCCCeEEEEecCccc--CccCC-----
Confidence 233444444556789999987 2345555556778777765200 00000
Q ss_pred cccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC-eEEEEECCCCceEEEEecCCCCeEEEEEcc-
Q 048801 520 HLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWNAVDGSLVHSLTGHSASSYVLDVHP- 597 (1715)
Q Consensus 520 ~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG-tI~IWDl~sg~~l~tL~gH~~~V~sLafSP- 597 (1715)
...........+..-.++...+|.+.+++..+| .|.+|+.. |+++..+.-....+++++|--
T Consensus 202 ---------------~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~ 265 (307)
T COG3386 202 ---------------RRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGP 265 (307)
T ss_pred ---------------cceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCC
Confidence 000111122345566788888998886666555 89999987 999999987767788888842
Q ss_pred CCCcEEEEEe
Q 048801 598 FNPRIAMSAG 607 (1715)
Q Consensus 598 ~dg~lLaSgs 607 (1715)
+...+++|+.
T Consensus 266 ~~~~L~iTs~ 275 (307)
T COG3386 266 DLNTLYITSA 275 (307)
T ss_pred CcCEEEEEec
Confidence 2234444443
No 415
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.44 E-value=15 Score=49.38 Aligned_cols=119 Identities=13% Similarity=0.132 Sum_probs=76.5
Q ss_pred CCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe-cCCCCeEEEEEccC--CCc---EEEEEeCCCcEEEEE-CC
Q 048801 546 RGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT-GHSASSYVLDVHPF--NPR---IAMSAGYDGRTIVWD-IW 618 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~-gH~~~V~sLafSP~--dg~---lLaSgs~DGtI~VWD-l~ 618 (1715)
..++..+.+.+...++.++.++.+...++..+.+..... .....|.|+.++|. ++. +++.|.++..+.+.- ..
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p 567 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP 567 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence 345566666677788888888888777877666332221 23567899999975 333 888888777655443 33
Q ss_pred CCceEEEEEc----ccceEEEEEEcCCCCEEEEEeCCCeEEEE--ECCCCcc
Q 048801 619 EGTPIRIYEI----GRFKLVDGKFSPDGTSIVLSDDVGQIYLL--NTGQGES 664 (1715)
Q Consensus 619 tgk~l~tl~~----h~~~V~svafSPDG~~LAsgs~DG~I~IW--dl~tGe~ 664 (1715)
+...+..... -...|.-..|--|+.+|.++..||.+.-| |..+|+.
T Consensus 568 d~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 568 DLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQL 619 (1096)
T ss_pred CcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceE
Confidence 3333332211 12345566777789999999999988655 5556643
No 416
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.37 E-value=2 Score=57.54 Aligned_cols=133 Identities=16% Similarity=0.155 Sum_probs=86.4
Q ss_pred CCCEEEEE-eCCCeeEEEECCCCCceEEEeCCCCC-eEEEEecCCCCc----ceEEEEecCCCcEEEEecCCCCCcceec
Q 048801 296 NNTLVASA-SNDFVIRVWRLPDGLPISVLRGHTGA-VTAIAFSPRPSA----IYQLLSSSDDGTCRIWDARYSQYSPRIY 369 (1715)
Q Consensus 296 Dg~lLASG-S~DGtIrVWDl~tg~~l~~L~gH~~~-VtsLafSPdg~~----~~~LaSgS~DGtVrIWDl~tg~~l~~i~ 369 (1715)
+.++|+.- .....|+-.|++.|+.+..+..|... |..+ .|+.+. ....+.|-.+..|..||.+-... ..+.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCC-ceee
Confidence 33444443 45678999999999999999877654 5544 443210 01346677778899999874320 0000
Q ss_pred CCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC
Q 048801 370 LPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN 449 (1715)
Q Consensus 370 ~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~ 449 (1715)
. ............|++-+.+| +||+|+.+|.||+||-.. ......+.+-..
T Consensus 569 ~-------------------~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g---------~~AKT~lp~lG~ 619 (794)
T PF08553_consen 569 S-------------------QSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG---------KRAKTALPGLGD 619 (794)
T ss_pred c-------------------cccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccc---------hhhhhcCCCCCC
Confidence 0 00011234457889888887 688899999999999432 122345667788
Q ss_pred CeeEEEEccCc
Q 048801 450 DVNYVQFSGCA 460 (1715)
Q Consensus 450 ~V~sLafspdg 460 (1715)
+|..|..+.+|
T Consensus 620 pI~~iDvt~DG 630 (794)
T PF08553_consen 620 PIIGIDVTADG 630 (794)
T ss_pred CeeEEEecCCC
Confidence 99999999987
No 417
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.36 E-value=3.2 Score=52.83 Aligned_cols=127 Identities=17% Similarity=0.127 Sum_probs=68.0
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCC
Q 048801 283 GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYS 362 (1715)
Q Consensus 283 gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg 362 (1715)
........+.++|+|++++. +.||...|+.....+... .+.....+|.+.+ .+++-...++|.|+.--..
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n----~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN----RYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS----EEEEE-TTS-EEEEETTEE
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecCc----cEEEEECCCeEEEEEcCcc
Confidence 34455789999999999988 567888888843333222 2334577888855 4666666888999632222
Q ss_pred CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeee
Q 048801 363 QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442 (1715)
Q Consensus 363 ~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~ 442 (1715)
.....+..+ ..+..+-. |.+|+..+. +.|.+||+.+++ .+.
T Consensus 100 ~~~k~i~~~--------------------------~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~---------~i~ 140 (443)
T PF04053_consen 100 EVVKSIKLP--------------------------FSVEKIFG---GNLLGVKSS-DFICFYDWETGK---------LIR 140 (443)
T ss_dssp -TT-----S--------------------------S-EEEEE----SSSEEEEET-TEEEEE-TTT-----------EEE
T ss_pred ccceEEcCC--------------------------cccceEEc---CcEEEEECC-CCEEEEEhhHcc---------eee
Confidence 221222111 11223322 888877765 489999998754 344
Q ss_pred eecCCCCCeeEEEEccCc
Q 048801 443 VLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 443 ~l~gH~~~V~sLafspdg 460 (1715)
.+... +|..+.|++++
T Consensus 141 ~i~v~--~vk~V~Ws~~g 156 (443)
T PF04053_consen 141 RIDVS--AVKYVIWSDDG 156 (443)
T ss_dssp EESS---E-EEEEE-TTS
T ss_pred EEecC--CCcEEEEECCC
Confidence 44422 48999999986
No 418
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.26 E-value=0.75 Score=46.85 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=70.5
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceE
Q 048801 246 VYCAIFDR---SG-RFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS 321 (1715)
Q Consensus 246 Vt~VafSp---DG-~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~ 321 (1715)
|+++++.. || +.|++|+.|..|+||+-+ ..+..+.. ...|++++-... ..++.+..+|+|-||+- ...+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 56666654 33 589999999999999854 56666663 456778877665 57888999999999974 23344
Q ss_pred EEeCCCCCeEEEEecC-CCCcceEEEEecCCCcEE
Q 048801 322 VLRGHTGAVTAIAFSP-RPSAIYQLLSSSDDGTCR 355 (1715)
Q Consensus 322 ~L~gH~~~VtsLafSP-dg~~~~~LaSgS~DGtVr 355 (1715)
.++. ...++++++.. ++.....|++|-.+|.|-
T Consensus 76 RiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4442 23366666554 333334788988888764
No 419
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.21 E-value=3.4 Score=48.31 Aligned_cols=254 Identities=13% Similarity=0.134 Sum_probs=133.9
Q ss_pred eEEEEecCCCCcceEEEEecCCCc-EEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC
Q 048801 330 VTAIAFSPRPSAIYQLLSSSDDGT-CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN 408 (1715)
Q Consensus 330 VtsLafSPdg~~~~~LaSgS~DGt-VrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd 408 (1715)
...|+|+|..+. .++.+-.-|+ ..++|..+.+....+..... .+-.-.-.||||
T Consensus 70 ~Hgi~~~p~~~r--avafARrPGtf~~vfD~~~~~~pv~~~s~~~-----------------------RHfyGHGvfs~d 124 (366)
T COG3490 70 GHGIAFHPALPR--AVAFARRPGTFAMVFDPNGAQEPVTLVSQEG-----------------------RHFYGHGVFSPD 124 (366)
T ss_pred cCCeecCCCCcc--eEEEEecCCceEEEECCCCCcCcEEEecccC-----------------------ceeecccccCCC
Confidence 346778887653 4555555555 45788887765544422111 111223469999
Q ss_pred CCeEEEecC-----CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCc
Q 048801 409 GTVFVTGSS-----DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSW 483 (1715)
Q Consensus 409 G~~LatGs~-----DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~ 483 (1715)
|.+|.+.-. -|.|-|||.+.+ ...+..+..|.-.-..+.+.++|
T Consensus 125 G~~LYATEndfd~~rGViGvYd~r~~--------fqrvgE~~t~GiGpHev~lm~DG----------------------- 173 (366)
T COG3490 125 GRLLYATENDFDPNRGVIGVYDAREG--------FQRVGEFSTHGIGPHEVTLMADG----------------------- 173 (366)
T ss_pred CcEEEeecCCCCCCCceEEEEecccc--------cceecccccCCcCcceeEEecCC-----------------------
Confidence 998886533 378999999753 33455566666666677777776
Q ss_pred ccCceEEEEcCCCeEEEE-ecCCCccCcccccccccccccCCCCCCCCCCCCCCCc--cccc--CCCCCeeEEEeCCCCC
Q 048801 484 FCHDNIVTCSRDGSAIIW-IPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPR--QRLL--PTPRGVNMIVWSLDNR 558 (1715)
Q Consensus 484 ~~~~~LaSgS~DGsIrIW-Dl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~--~~l~--~h~~~VtslafSPDG~ 558 (1715)
..++.+ +|-|... |... ....+......+.+ .....+..+ ..+. .+...|+.++..+||+
T Consensus 174 ---rtlvva--nGGIethpdfgR--~~lNldsMePSlvl--------ld~atG~liekh~Lp~~l~~lSiRHld~g~dgt 238 (366)
T COG3490 174 ---RTLVVA--NGGIETHPDFGR--TELNLDSMEPSLVL--------LDAATGNLIEKHTLPASLRQLSIRHLDIGRDGT 238 (366)
T ss_pred ---cEEEEe--CCceecccccCc--cccchhhcCccEEE--------EeccccchhhhccCchhhhhcceeeeeeCCCCc
Confidence 233332 1222222 1100 00000000000000 000011111 1111 2445688899999988
Q ss_pred EEEEEecCCe-----EEEEECCCCceEEEEe-------cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEE
Q 048801 559 FVLAAIMDCR-----ICVWNAVDGSLVHSLT-------GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY 626 (1715)
Q Consensus 559 ~LaTgs~DGt-----I~IWDl~sg~~l~tL~-------gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl 626 (1715)
.++.+-..|- -.|=-...|+.+.-+. .....|-+|+.+..++.+.+|+-..+...+||..+|..+..-
T Consensus 239 vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a 318 (366)
T COG3490 239 VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEA 318 (366)
T ss_pred EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecc
Confidence 7765543321 1111122344443332 123456678888767777777777778899999999887544
Q ss_pred EcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 627 EIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 627 ~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
.... +.. .-+...-+++++.+|.+.++.
T Consensus 319 ~l~d--aaG--va~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 319 ALPD--AAG--VAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred cccc--ccc--ceeccCceEEecCCceEEecc
Confidence 3111 112 223444477777888888774
No 420
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.20 E-value=0.57 Score=61.50 Aligned_cols=154 Identities=15% Similarity=0.125 Sum_probs=86.5
Q ss_pred CCCeEEEEEcCCCCEEEEEe------CCC--cEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCC--------
Q 048801 243 RDAVYCAIFDRSGRFVITGS------DDR--LVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASND-------- 306 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS------~DG--tIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~D-------- 306 (1715)
...+...+++|||+.+|..- .|+ .|.+++. .+.....+.+. ..+.-.|+|||..|++.+..
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 34678899999999887665 244 4444454 23332223332 38889999999888777532
Q ss_pred ----CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEE---EecCCCCCcceecCCCCCCCccC
Q 048801 307 ----FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI---WDARYSQYSPRIYLPKPPDAITG 379 (1715)
Q Consensus 307 ----GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrI---WDl~tg~~l~~i~~~~~~~~i~g 379 (1715)
+.+.+.++..+.... ...+.|..+.|+|||.. |+... +|.|.+ -....|. ..+..+
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~R---iA~i~-~g~v~Va~Vvr~~~G~--~~l~~~-------- 488 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVR---AAMII-GGKVYLAVVEQTEDGQ--YALTNP-------- 488 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCE---EEEEE-CCEEEEEEEEeCCCCc--eeeccc--------
Confidence 233333444433322 23567999999999984 33322 466766 3322332 111000
Q ss_pred ccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCC
Q 048801 380 KSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSAC 427 (1715)
Q Consensus 380 ~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~ 427 (1715)
......-...+..+.|..++.++ ++..++...+|.+.
T Consensus 489 ----------~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 489 ----------REVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred ----------EEeecccCCccccceEecCCEEE-EEecCCCCceEEEe
Confidence 00001112235778999999855 55555555566543
No 421
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.19 E-value=4.3 Score=49.81 Aligned_cols=68 Identities=19% Similarity=0.050 Sum_probs=41.4
Q ss_pred CCeEEEEEccC------CCcEEEEEeCCCcEEEEECCCCceEEEE---Ec-ccceEEEEEEcCCCCEEEEEeCCCeEE
Q 048801 588 ASSYVLDVHPF------NPRIAMSAGYDGRTIVWDIWEGTPIRIY---EI-GRFKLVDGKFSPDGTSIVLSDDVGQIY 655 (1715)
Q Consensus 588 ~~V~sLafSP~------dg~lLaSgs~DGtI~VWDl~tgk~l~tl---~~-h~~~V~svafSPDG~~LAsgs~DG~I~ 655 (1715)
..+..+.|... .+.++++.-..+.|....+..+..+... .. ....+.++++.|||.+.++.+.+|.|+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 45667777541 3356665555667877777655333222 12 233789999999999888888888775
No 422
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.14 E-value=0.8 Score=55.69 Aligned_cols=143 Identities=10% Similarity=0.128 Sum_probs=88.7
Q ss_pred CCEEEEEeC----------CCcEEEEeCCCC----cEEEEe--cCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC
Q 048801 255 GRFVITGSD----------DRLVKIWSMETA----FCLASC--RGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL 318 (1715)
Q Consensus 255 G~~LaTGS~----------DGtIrIWDl~tg----k~l~tL--~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~ 318 (1715)
..+|+.|.. .|.|.++++... ..+..+ ....++|++|+-- .+. |+++. .+.|.+|++....
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence 467777742 288999999874 122222 2357889999876 444 44443 3789999998777
Q ss_pred -ceEEEe-CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCC-CCCcceecCCCCCCCccCccCCCCCCCCCCCCCC
Q 048801 319 -PISVLR-GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY-SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL 395 (1715)
Q Consensus 319 -~l~~L~-gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~t-g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~ 395 (1715)
.+..-. .....|+++....+ +++.|.....|.++.+.. +..+..+. ...
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~~~-----~I~vgD~~~sv~~~~~~~~~~~l~~va-----------------------~d~ 170 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVFKN-----YILVGDAMKSVSLLRYDEENNKLILVA-----------------------RDY 170 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEETT-----EEEEEESSSSEEEEEEETTTE-EEEEE-----------------------EES
T ss_pred cchhhheecceEEEEEEecccc-----EEEEEEcccCEEEEEEEccCCEEEEEE-----------------------ecC
Confidence 333322 12336677766643 788888878888875543 11111110 011
Q ss_pred CCcceeEEEEccCCCeEEEecCCCeEEEEeCCC
Q 048801 396 QSHQILCCAYNANGTVFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 396 h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t 428 (1715)
....++++.|-.+++.++++..+|.+.++....
T Consensus 171 ~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 171 QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred CCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 244588999987777999999999999998863
No 423
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.086 Score=66.39 Aligned_cols=95 Identities=11% Similarity=0.133 Sum_probs=80.0
Q ss_pred CCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeE-EEEEccCCCcEEEEEeCCCcEEEEECCCCce
Q 048801 544 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSY-VLDVHPFNPRIAMSAGYDGRTIVWDIWEGTP 622 (1715)
Q Consensus 544 h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~-sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~ 622 (1715)
-...|.-+.|+|.-.+||++..+|.|.+..+. .+.+.++.-|...++ +++|.| +|.++|.|-.||+|++-|+.+|..
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCc
Confidence 34568889999999999999999999999987 888889987877777 999999 799999999999999999999988
Q ss_pred EEEEE-cccceEEEEEEcC
Q 048801 623 IRIYE-IGRFKLVDGKFSP 640 (1715)
Q Consensus 623 l~tl~-~h~~~V~svafSP 640 (1715)
+..+. .....|.++-|++
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 77632 1344677777763
No 424
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.02 E-value=1.2 Score=54.27 Aligned_cols=186 Identities=10% Similarity=0.090 Sum_probs=101.0
Q ss_pred CCeEEEecC---------C-CeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccccc
Q 048801 409 GTVFVTGSS---------D-TFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPK 478 (1715)
Q Consensus 409 G~~LatGs~---------D-G~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~ 478 (1715)
..+|++|+. . |.|.++++.... ........+.. ....++|++++-..
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~--~~~~~l~~i~~-~~~~g~V~ai~~~~-------------------- 98 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESP--ENNFKLKLIHS-TEVKGPVTAICSFN-------------------- 98 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-------EEEEEEE-EEESS-EEEEEEET--------------------
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEccc--ccceEEEEEEE-EeecCcceEhhhhC--------------------
Confidence 467777753 2 899999997630 00011222222 23467888887653
Q ss_pred ccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC
Q 048801 479 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR 558 (1715)
Q Consensus 479 ~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~ 558 (1715)
..|+.+ ..+.|.+|++...+. +... ........+.++.. .+.
T Consensus 99 --------~~lv~~-~g~~l~v~~l~~~~~------l~~~---------------------~~~~~~~~i~sl~~--~~~ 140 (321)
T PF03178_consen 99 --------GRLVVA-VGNKLYVYDLDNSKT------LLKK---------------------AFYDSPFYITSLSV--FKN 140 (321)
T ss_dssp --------TEEEEE-ETTEEEEEEEETTSS------EEEE---------------------EEE-BSSSEEEEEE--ETT
T ss_pred --------CEEEEe-ecCEEEEEEccCccc------chhh---------------------heecceEEEEEEec--ccc
Confidence 243333 358999999876430 0000 01111123444444 466
Q ss_pred EEEEEecCCeEEEEECCC-CceEEEEe--cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-------Cc-e---EE
Q 048801 559 FVLAAIMDCRICVWNAVD-GSLVHSLT--GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE-------GT-P---IR 624 (1715)
Q Consensus 559 ~LaTgs~DGtI~IWDl~s-g~~l~tL~--gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t-------gk-~---l~ 624 (1715)
+|++|..-..|.++.... +..+..+. .....++++.|-+++ ..++.+..+|.|.++.... +. . +.
T Consensus 141 ~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~ 219 (321)
T PF03178_consen 141 YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERIS 219 (321)
T ss_dssp EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEE
T ss_pred EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCcccccccccceeEE
Confidence 999999888888775443 33233332 234567888887644 5888899999999998752 22 2 23
Q ss_pred EEEcccceEEEE---EEcC--CCC------EEEEEeCCCeEEEE
Q 048801 625 IYEIGRFKLVDG---KFSP--DGT------SIVLSDDVGQIYLL 657 (1715)
Q Consensus 625 tl~~h~~~V~sv---afSP--DG~------~LAsgs~DG~I~IW 657 (1715)
.+.. ...|+++ ++.| .+. .++.++.+|.|.+.
T Consensus 220 ~f~l-g~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 220 SFHL-GDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEC-CCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 3332 2346665 5555 222 47788888988844
No 425
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.96 E-value=0.054 Score=71.54 Aligned_cols=101 Identities=22% Similarity=0.379 Sum_probs=77.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcE-EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEE
Q 048801 255 GRFVITGSDDRLVKIWSMETAFC-LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAI 333 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~-l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsL 333 (1715)
+.+++.|++.|.|-..|+.+.-. +..=..-.++|++++|+.+|.+++.|-.+|.|.+||+..+..++.+..|..+++++
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 45788898889999988765311 11222346799999999999999999999999999999999999998887777666
Q ss_pred Eec---CCCCcceEEEEecCCCcEEEEecC
Q 048801 334 AFS---PRPSAIYQLLSSSDDGTCRIWDAR 360 (1715)
Q Consensus 334 afS---Pdg~~~~~LaSgS~DGtVrIWDl~ 360 (1715)
-+. .++. .++++...|. +|.+.
T Consensus 179 i~v~~t~~nS---~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 179 IFVGRTSQNS---KLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEeCCCc---EEEEccCCCc--eEEEE
Confidence 544 3333 6788877776 66653
No 426
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=94.91 E-value=0.012 Score=76.27 Aligned_cols=79 Identities=19% Similarity=0.261 Sum_probs=63.1
Q ss_pred hHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHhhc
Q 048801 1636 IQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1636 ~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
|.+++....-++|+--+-.|||+.|++.||.+++|-.++..|.|+..++.||+.||.++..=.+.|..|.+.|..+++.
T Consensus 627 f~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~~~~y~k~~~~le~~~~~k~~~ 705 (720)
T KOG1472|consen 627 FLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGSDTQYYKCAQALEKFFLFKLNE 705 (720)
T ss_pred ccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCccchheecccchhhhhcchhhh
Confidence 3333333333444444444447899999999999999999999999999999999999999999999999998887764
No 427
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.88 E-value=0.93 Score=56.46 Aligned_cols=143 Identities=10% Similarity=0.119 Sum_probs=97.3
Q ss_pred CCCEEE-EEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCC--E-----EEEEeCCCeeEEEECCCC-C-ceEEE
Q 048801 254 SGRFVI-TGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT--L-----VASASNDFVIRVWRLPDG-L-PISVL 323 (1715)
Q Consensus 254 DG~~La-TGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~--l-----LASGS~DGtIrVWDl~tg-~-~l~~L 323 (1715)
+.++|+ ++.....|+-.|++.|+.+....-|.. |+-+.+.|+++ . -+.|-.|..|.-||.+-. . .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 344444 445556788889999999999987776 88888888653 1 234556788999997632 2 23333
Q ss_pred eCCC----CCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcc
Q 048801 324 RGHT----GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ 399 (1715)
Q Consensus 324 ~gH~----~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~ 399 (1715)
.+|. ....|.+-..+| ++++||.+|.|++||- .+....+ ...+-+.+
T Consensus 423 q~kqy~~k~nFsc~aTT~sG----~IvvgS~~GdIRLYdr-i~~~AKT------------------------AlPgLG~~ 473 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG----YIVVGSLKGDIRLYDR-IGRRAKT------------------------ALPGLGDA 473 (644)
T ss_pred eccccccccccceeeecCCc----eEEEeecCCcEEeehh-hhhhhhh------------------------cccccCCc
Confidence 3332 345677766666 8999999999999986 3332111 11223677
Q ss_pred eeEEEEccCCCeEEEecCCCeEEEEeCC
Q 048801 400 ILCCAYNANGTVFVTGSSDTFARVWSAC 427 (1715)
Q Consensus 400 VtslafSpdG~~LatGs~DG~IrVWDl~ 427 (1715)
|..|..+.+|++|++.+ +.++.+.++.
T Consensus 474 I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 474 IKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 99999999999988665 5677777764
No 428
>PHA02713 hypothetical protein; Provisional
Probab=94.85 E-value=1.4 Score=57.98 Aligned_cols=71 Identities=10% Similarity=0.100 Sum_probs=43.8
Q ss_pred CCCEEEEEecC------CeEEEEECCC-Cc--eEEEEecCCCCeEEEEEccCCCcEEEEEeCCC--cEEEEECCCCceEE
Q 048801 556 DNRFVLAAIMD------CRICVWNAVD-GS--LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDG--RTIVWDIWEGTPIR 624 (1715)
Q Consensus 556 DG~~LaTgs~D------GtI~IWDl~s-g~--~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DG--tI~VWDl~tgk~l~ 624 (1715)
+|++.++|+.+ ..|..||..+ .+ .+..+.........+++ ++++.++||.|| .+-.||..+.+-..
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH---DNTIMMLHCYESYMLQDTFNVYTYEWNH 539 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE---CCEEEEEeeecceeehhhcCcccccccc
Confidence 67777777754 2467899876 33 33334333333333333 779999999998 67778877766544
Q ss_pred EEEcc
Q 048801 625 IYEIG 629 (1715)
Q Consensus 625 tl~~h 629 (1715)
....|
T Consensus 540 ~~~~~ 544 (557)
T PHA02713 540 ICHQH 544 (557)
T ss_pred hhhhc
Confidence 44433
No 429
>KOG1786 consensus Lysosomal trafficking regulator LYST and related BEACH and WD40 repeat proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.72 E-value=0.01 Score=81.90 Aligned_cols=54 Identities=13% Similarity=0.279 Sum_probs=46.2
Q ss_pred hhhcccccccccchhHHHHHHHHhhccCchh-------------------hHHHHHHHHHHhcCCCcccccccc
Q 048801 36 DMVANQVVEADVDLREVYFLIIHFLSSGPCQ-------------------RTLGLLWNELLEHQLLPRRYHAWF 90 (1715)
Q Consensus 36 ~~~~~~~~dv~~~i~ElyfLi~~fL~~gp~~-------------------~~~~~L~ReALESeyVS~~LH~WF 90 (1715)
+++-..+.||+||+| +||+|+.+-+.+++. +.|..+||+||||+||+.++|+|+
T Consensus 1008 ~~~~~s~td~kel~p-~f~~pe~l~n~~~~d~g~~qn~~~~~~~~~~~~~~~~i~~hr~al~s~~v~~~~~~~i 1080 (1081)
T KOG1786|consen 1008 LASIESSTDVKELIP-FFYLPEFLRNRNGFDFGERQNGERVNDVVLRGDPRSFILIHRQALESEYVSSNLHTWI 1080 (1081)
T ss_pred ccccccccchhhccc-cccCcceeecCCccccCcccCCCcccceeeccchHHHHHHHHHhhhcccccccceecc
Confidence 344456679999999 999999988776554 789999999999999999999994
No 430
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.71 E-value=2.1 Score=50.18 Aligned_cols=200 Identities=10% Similarity=-0.017 Sum_probs=109.7
Q ss_pred ceeEEEEcCCCCC-eEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCcEEEEecCCCC-CeEEEEECCCCCEEEEEeCCCe
Q 048801 233 MQNIKKLRGHRDA-VYCAIFDRSGRFVITGSDDR--LVKIWSMETAFCLASCRGHEG-DITDLAVSSNNTLVASASNDFV 308 (1715)
Q Consensus 233 ~k~l~~L~GH~~~-Vt~VafSpDG~~LaTGS~DG--tIrIWDl~tgk~l~tL~gHs~-~VtsLafSpDg~lLASGS~DGt 308 (1715)
.+.+.++...... ...+.|..+|.++-+.|.-| .|+.+|+.+|+.+....-... ---.|++. ++++..-.=.++.
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSE
T ss_pred eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCe
Confidence 4555555433333 34677878888888887665 799999999988765432111 11223333 2333333445789
Q ss_pred eEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCC
Q 048801 309 IRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNG 388 (1715)
Q Consensus 309 IrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~ 388 (1715)
..+||..+.+.+.++. ..+.=+.|+ .++. .|+.......|.++|..+.+....+.+.....
T Consensus 112 ~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~---~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~------------- 172 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFP-YPGEGWGLT--SDGK---RLIMSDGSSRLYFLDPETFKEVRTIQVTDNGR------------- 172 (264)
T ss_dssp EEEEETTTTEEEEEEE--SSS--EEE--ECSS---CEEEE-SSSEEEEE-TTT-SEEEEEE-EETTE-------------
T ss_pred EEEEccccceEEEEEe-cCCcceEEE--cCCC---EEEEECCccceEEECCcccceEEEEEEEECCE-------------
Confidence 9999999998888886 345667777 3444 46666667889999988777666554421110
Q ss_pred CCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee------cCCCCCeeEEEEccCc
Q 048801 389 PSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL------SGHENDVNYVQFSGCA 460 (1715)
Q Consensus 389 ~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l------~gH~~~V~sLafspdg 460 (1715)
.-..+.-+.|- +|.+.|=.-....|...|..++.+............. ....+-.+.|++.|..
T Consensus 173 -------pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~ 242 (264)
T PF05096_consen 173 -------PVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPET 242 (264)
T ss_dssp -------E---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTT
T ss_pred -------ECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCC
Confidence 01224445554 6666665555666777777776542211100000000 0114567889998875
No 431
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.53 E-value=2 Score=56.52 Aligned_cols=116 Identities=16% Similarity=0.088 Sum_probs=63.0
Q ss_pred CCCCeEEEEECCCCCEEEEEe------CCC--eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCC-CcE
Q 048801 284 HEGDITDLAVSSNNTLVASAS------NDF--VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD-GTC 354 (1715)
Q Consensus 284 Hs~~VtsLafSpDg~lLASGS------~DG--tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D-GtV 354 (1715)
....+.+.+++|||+.+|... .|. .|.+++. .+.. ..+.. ....+.-.|+|++. .|++.... ..+
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~---~lw~v~dg~~~~ 421 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDAD---AVWVVVDGNTVV 421 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCC---ceEEEecCcceE
Confidence 334678999999999887765 244 4444454 2333 33332 22388899999977 44444322 223
Q ss_pred EEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEE
Q 048801 355 RIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARV 423 (1715)
Q Consensus 355 rIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrV 423 (1715)
++.+-.....+..+.... ..... .....|..+.|||||..++... +|.|.|
T Consensus 422 ~v~~~~~~gql~~~~vd~---------------ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 422 RVIRDPATGQLARTPVDA---------------SAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred EEeccCCCceEEEEeccC---------------chhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 333221111111111100 00000 1234599999999999887765 477766
No 432
>PHA02713 hypothetical protein; Provisional
Probab=94.52 E-value=1.6 Score=57.24 Aligned_cols=91 Identities=12% Similarity=-0.007 Sum_probs=48.8
Q ss_pred eEEEEECCCCceEE--EEecCCCCeEEEEEccCCCcEEEEEeCCC------cEEEEECCC-Cc--eEEEEEcccceEEEE
Q 048801 568 RICVWNAVDGSLVH--SLTGHSASSYVLDVHPFNPRIAMSAGYDG------RTIVWDIWE-GT--PIRIYEIGRFKLVDG 636 (1715)
Q Consensus 568 tI~IWDl~sg~~l~--tL~gH~~~V~sLafSP~dg~lLaSgs~DG------tI~VWDl~t-gk--~l~tl~~h~~~V~sv 636 (1715)
.|..||..+.+-.. .+.........+++ ++.+.+.||.++ .|..||..+ .+ .+..+.........+
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~---~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~ 509 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSH---KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI 509 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEE---CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE
Confidence 47778877654322 22111111112222 567777887652 467888876 33 334443222222222
Q ss_pred EEcCCCCEEEEEeCCC--eEEEEECCCCc
Q 048801 637 KFSPDGTSIVLSDDVG--QIYLLNTGQGE 663 (1715)
Q Consensus 637 afSPDG~~LAsgs~DG--~I~IWdl~tGe 663 (1715)
.-+|+..++|+.+| .+..||..+++
T Consensus 510 --~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 510 --LHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred --EECCEEEEEeeecceeehhhcCccccc
Confidence 23788888998888 56666666654
No 433
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=94.31 E-value=1 Score=45.88 Aligned_cols=65 Identities=22% Similarity=0.319 Sum_probs=50.1
Q ss_pred eEEEEECC---CC-CEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEec
Q 048801 288 ITDLAVSS---NN-TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359 (1715)
Q Consensus 288 VtsLafSp---Dg-~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl 359 (1715)
|++|++.. || +.|++||.|..|+||+- ...+..+. -...|++|+-...+ .++.+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~~----~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGGG----RFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCCC----EEEEEecCCEEEEEeC
Confidence 66777765 33 68999999999999984 35666666 45678888877764 6899999999999864
No 434
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.14 E-value=2.7 Score=55.34 Aligned_cols=64 Identities=14% Similarity=0.225 Sum_probs=39.0
Q ss_pred CCCCEEEEEecCC-----eEEEEECCCCceEEE--EecCCCCeEEEEEccCCCcEEEEEeCCC-----cEEEEECCCCc
Q 048801 555 LDNRFVLAAIMDC-----RICVWNAVDGSLVHS--LTGHSASSYVLDVHPFNPRIAMSAGYDG-----RTIVWDIWEGT 621 (1715)
Q Consensus 555 PDG~~LaTgs~DG-----tI~IWDl~sg~~l~t--L~gH~~~V~sLafSP~dg~lLaSgs~DG-----tI~VWDl~tgk 621 (1715)
-++.+.++|+.|+ +|..||..+.+.... +......+..+. .++.+.+.||.|| +|..||..+.+
T Consensus 474 ~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~---~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 474 LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV---LGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEE---ECCEEEEEecccCccccceeEEcCCCCCc
Confidence 3778888888776 377788876554332 222222222233 3778888999887 45666655443
No 435
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.11 E-value=2.5 Score=55.59 Aligned_cols=103 Identities=11% Similarity=0.103 Sum_probs=56.5
Q ss_pred CCCEEEEEecCC------eEEEEECCCCceEE--EEecCCCCeEEEEEccCCCcEEEEEeCCCc-----EEEEECCCCce
Q 048801 556 DNRFVLAAIMDC------RICVWNAVDGSLVH--SLTGHSASSYVLDVHPFNPRIAMSAGYDGR-----TIVWDIWEGTP 622 (1715)
Q Consensus 556 DG~~LaTgs~DG------tI~IWDl~sg~~l~--tL~gH~~~V~sLafSP~dg~lLaSgs~DGt-----I~VWDl~tgk~ 622 (1715)
+|.+.++|+.++ +|..||..+.+... .+..-..... ++. .++.+.+.||.||. |..+|..+.+.
T Consensus 427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV--LNGKIYVVGGFDGTSALSSVERYDPETNQW 503 (571)
T ss_pred CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEE--ECCEEEEECCccCCCccceEEEEcCCCCce
Confidence 788888888655 47788887754332 2211111111 222 26788889998873 66788766544
Q ss_pred EEE--EEcccceEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCc
Q 048801 623 IRI--YEIGRFKLVDGKFSPDGTSIVLSDDVG-----QIYLLNTGQGE 663 (1715)
Q Consensus 623 l~t--l~~h~~~V~svafSPDG~~LAsgs~DG-----~I~IWdl~tGe 663 (1715)
... .......+. ...-++...|+|+.|| +|..||..+++
T Consensus 504 ~~v~~m~~~rs~~g--~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 504 TMVAPMTSPRSAVG--VVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred eEcccCcccccccc--EEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 333 221111111 2233566677777665 45556555543
No 436
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.73 E-value=11 Score=43.02 Aligned_cols=46 Identities=4% Similarity=0.024 Sum_probs=41.2
Q ss_pred EEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEc
Q 048801 551 IVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVH 596 (1715)
Q Consensus 551 lafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafS 596 (1715)
+++..+|.+.++.-..++|...|..+|+.+..+.-....|++++|-
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 4557789999989899999999999999999999889999999994
No 437
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=93.72 E-value=0.054 Score=71.30 Aligned_cols=101 Identities=20% Similarity=0.247 Sum_probs=82.3
Q ss_pred HHHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhc
Q 048801 1611 ESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESY 1690 (1715)
Q Consensus 1611 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~ 1690 (1715)
....++++...+...+ .-.+....|..+..--.+++|...+..|++...|+++++|..|..+..+..|+.+|+.||++|
T Consensus 1027 ~~~~~i~~~~~~~~~~-~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~ 1105 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDS-AGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTY 1105 (1157)
T ss_pred HHHHHHHHHHHhcccc-cccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhh
Confidence 4566777766666553 223334556777677778999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHh
Q 048801 1691 FIKNAALSAKVERLRDWFNRTL 1712 (1715)
Q Consensus 1691 n~~~~~i~~~~~~l~~~~~~~i 1712 (1715)
|+-++.|-.-|..|...+..+.
T Consensus 1106 ~~egs~~y~d~~~l~~~~~~~~ 1127 (1157)
T KOG0386|consen 1106 NEEGSRVYEDAIVLQSVFKSAR 1127 (1157)
T ss_pred ccCCceechhHHHHHHHHhhhH
Confidence 9999988888887777766543
No 438
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.71 E-value=6.4 Score=46.56 Aligned_cols=130 Identities=8% Similarity=0.066 Sum_probs=89.0
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeC-CCCCeEEEEecCCCCcceEEEEecCCCcEEEEec
Q 048801 281 CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRG-HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359 (1715)
Q Consensus 281 L~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~g-H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl 359 (1715)
+.|-...|.++.|+|+.+.|++......-.||=-.+|..++++.- .-...-.|.+..++. +.++--.++.+.++.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~---fvi~dER~~~l~~~~v 157 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ---FVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE---EEEEehhcceEEEEEE
Confidence 455566699999999999999998888888888788998888752 123445677777765 6677777888888877
Q ss_pred CCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCC
Q 048801 360 RYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 360 ~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t 428 (1715)
..+..+...... ..+.......+...-.++|.|....|.++-+-.-+.||.+..
T Consensus 158 d~~t~~~~~~~~---------------~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 158 DADTTVISAKVQ---------------KIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred cCCccEEeccce---------------EEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 655322211110 000001111145578899999988888888888888887753
No 439
>PRK10115 protease 2; Provisional
Probab=93.66 E-value=37 Score=45.93 Aligned_cols=115 Identities=7% Similarity=0.024 Sum_probs=68.8
Q ss_pred CCeEEEEEcCCCCEEEEEeC-----CCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCC------CeeEEE
Q 048801 244 DAVYCAIFDRSGRFVITGSD-----DRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASND------FVIRVW 312 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~-----DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~D------GtIrVW 312 (1715)
-.+..+.++|||++|+.+.+ ...|++-|+.+|..+...-.... ..++|++|++.|+.+..+ ..|++|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 44677889999999987643 23688999998864433221222 469999999876655432 367888
Q ss_pred ECCCC--CceEEEeCCCCCeE-EEEecCCCCcceEEEEecCCCcEEEEecC
Q 048801 313 RLPDG--LPISVLRGHTGAVT-AIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360 (1715)
Q Consensus 313 Dl~tg--~~l~~L~gH~~~Vt-sLafSPdg~~~~~LaSgS~DGtVrIWDl~ 360 (1715)
++.++ +....+........ .+..+.++.....-.....++.+.+|+..
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 88887 44444543333333 33334466532111122334678888853
No 440
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.53 E-value=3.6 Score=48.05 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=65.6
Q ss_pred EEEEcCCC-CEEEEEeCCCc-EEEEeCCCCcEEEEecCCCCC--eEEEEECCCCCEEEEEeCC-----CeeEEEECCCC-
Q 048801 248 CAIFDRSG-RFVITGSDDRL-VKIWSMETAFCLASCRGHEGD--ITDLAVSSNNTLVASASND-----FVIRVWRLPDG- 317 (1715)
Q Consensus 248 ~VafSpDG-~~LaTGS~DGt-IrIWDl~tgk~l~tL~gHs~~--VtsLafSpDg~lLASGS~D-----GtIrVWDl~tg- 317 (1715)
.++|+|.- +-++.+-.-|+ ..++|..+++...++...++. --.=.||+||.+|+..-.| |.|-|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 35677743 44555655554 567888877766654322211 1123699999999886443 78999998754
Q ss_pred CceEEEeCCCCCeEEEEecCCCCcceEEEEe
Q 048801 318 LPISVLRGHTGAVTAIAFSPRPSAIYQLLSS 348 (1715)
Q Consensus 318 ~~l~~L~gH~~~VtsLafSPdg~~~~~LaSg 348 (1715)
..+..+..|.-.-..+.|.+|+. .|+.+
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGr---tlvva 179 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGR---TLVVA 179 (366)
T ss_pred ceecccccCCcCcceeEEecCCc---EEEEe
Confidence 45667778888888999999997 45544
No 441
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.48 E-value=0.18 Score=66.81 Aligned_cols=98 Identities=9% Similarity=0.126 Sum_probs=74.7
Q ss_pred CCCEEEEEecCCeEEEEECCCC-ceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceE-
Q 048801 556 DNRFVLAAIMDCRICVWNAVDG-SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKL- 633 (1715)
Q Consensus 556 DG~~LaTgs~DGtI~IWDl~sg-~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V- 633 (1715)
.+.+++.|+..|.|-..|.... .+...=..-.++|++++|+. ++.+++.|-.+|.|.+||+..++.++.+..+..+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 5667888999999988887542 11122223467899999988 88899999999999999999999999888665554
Q ss_pred --EEEEEcCCCCEEEEEeCCCeE
Q 048801 634 --VDGKFSPDGTSIVLSDDVGQI 654 (1715)
Q Consensus 634 --~svafSPDG~~LAsgs~DG~I 654 (1715)
..+.+..++..+.+++..|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGSF 199 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCce
Confidence 445666777788888888863
No 442
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.37 E-value=2 Score=50.62 Aligned_cols=157 Identities=17% Similarity=0.138 Sum_probs=92.5
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCcEEEE-ecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE-CCCCCceE
Q 048801 245 AVYCAIFDRSGRFVITGS-DDRLVKIWSMETAFCLAS-CRGHEGDITDLAVSSNNTLVASASNDFVIRVWR-LPDGLPIS 321 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS-~DGtIrIWDl~tgk~l~t-L~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD-l~tg~~l~ 321 (1715)
.+.+.++++||..+|... .++.-.||-...+..... +.+ ..++...|++++.+.+....+...+++. ..++....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 688899999999877665 233333443333333333 233 3788899999988777777677777774 33443222
Q ss_pred -EEeC--CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCc
Q 048801 322 -VLRG--HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH 398 (1715)
Q Consensus 322 -~L~g--H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~ 398 (1715)
.+.. -.+.|+.+.++||+....+++....++.|.+--+.....-....+ ..+.........
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l----------------~~~~~~~~~~~~ 166 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRL----------------TGPRRVAPPLLS 166 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCccee----------------ccceEecccccC
Confidence 1211 112899999999998654444445567787766543321100000 001111112245
Q ss_pred ceeEEEEccCCCeEEEecCCC
Q 048801 399 QILCCAYNANGTVFVTGSSDT 419 (1715)
Q Consensus 399 ~VtslafSpdG~~LatGs~DG 419 (1715)
.++.++|.+++.+++.+...+
T Consensus 167 ~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 167 DVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred cceeeeecCCCEEEEEeCCCC
Confidence 689999999998887776544
No 443
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.08 E-value=47 Score=45.37 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=50.6
Q ss_pred CCCCeEEEEECCCC------CEEEEEeCCCeeEEEECCCCCceEEEe--CCCCCeEEEEecCCCCc------ceEEEEec
Q 048801 284 HEGDITDLAVSSNN------TLVASASNDFVIRVWRLPDGLPISVLR--GHTGAVTAIAFSPRPSA------IYQLLSSS 349 (1715)
Q Consensus 284 Hs~~VtsLafSpDg------~lLASGS~DGtIrVWDl~tg~~l~~L~--gH~~~VtsLafSPdg~~------~~~LaSgS 349 (1715)
-...|.|+++.++. ++++.|+.|+++++..+....++..+. +-...+.++.+-+.... ..+|.+|-
T Consensus 581 l~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL 660 (1205)
T KOG1898|consen 581 LSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGL 660 (1205)
T ss_pred eceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEecc
Confidence 35678899998865 689999999999999998666666553 44455555555443211 23677787
Q ss_pred CCCcEEEE
Q 048801 350 DDGTCRIW 357 (1715)
Q Consensus 350 ~DGtVrIW 357 (1715)
.+|.+.-.
T Consensus 661 ~NGvllR~ 668 (1205)
T KOG1898|consen 661 RNGVLLRF 668 (1205)
T ss_pred cccEEEEE
Confidence 77766544
No 444
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.85 E-value=9.2 Score=45.28 Aligned_cols=172 Identities=10% Similarity=0.128 Sum_probs=115.9
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecC-CCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRG-HEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG 317 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~g-Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg 317 (1715)
+.|-...|.++.|+|+.+.|++....+.-.||=..+|..+.++.- .-...-.|.+..+|+++++-=.++.+.+..+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 445566699999999999999998888888888888999888642 1233456788888888888778899999888765
Q ss_pred CceEEEe---------CC-CCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 318 LPISVLR---------GH-TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 318 ~~l~~L~---------gH-~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
..+..+. .+ ....-.++|.|... .|+.+-.-.-+.|+.+..+........ ..
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~---~l~~aKEr~P~~I~~~~~~~~~l~~~~---------------~~ 222 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH---RLFVAKERNPIGIFEVTQSPSSLSVHA---------------SL 222 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCc---eEEEEEccCCcEEEEEecCCccccccc---------------cc
Confidence 3322211 12 55678899999987 677888878888887663321111100 11
Q ss_pred CCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCC
Q 048801 388 GPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t 428 (1715)
.+.......-..|.++.|++ .+.+||.+.+++.+.-.|...
T Consensus 223 ~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 223 DPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred CcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 11111122234577888886 556777777788887777653
No 445
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.75 E-value=0.23 Score=56.09 Aligned_cols=99 Identities=12% Similarity=0.112 Sum_probs=60.1
Q ss_pred CCCEEEEEecCCeEEEEECCC-CceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEE
Q 048801 556 DNRFVLAAIMDCRICVWNAVD-GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLV 634 (1715)
Q Consensus 556 DG~~LaTgs~DGtI~IWDl~s-g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~ 634 (1715)
-+..|++|+.+|.|++|+..- |.....+..-...|-++...-.++.+..+++.||.|+.|++.-++.+.....|..
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~--- 145 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF--- 145 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccC---
Confidence 356788999999999998752 1111111122233333332223445888999999999999988887776665552
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 635 DGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 635 svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
-++..+++.+.++.|.+|++..+
T Consensus 146 -----~~~e~~ivv~sd~~i~~a~~S~d 168 (238)
T KOG2444|consen 146 -----ESGEELIVVGSDEFLKIADTSHD 168 (238)
T ss_pred -----CCcceeEEecCCceEEeeccccc
Confidence 33444444445555555554444
No 446
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.70 E-value=11 Score=45.81 Aligned_cols=118 Identities=16% Similarity=0.084 Sum_probs=72.0
Q ss_pred CeeEEEeCCCCCEEEEEec-----------CCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEE
Q 048801 547 GVNMIVWSLDNRFVLAAIM-----------DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVW 615 (1715)
Q Consensus 547 ~VtslafSPDG~~LaTgs~-----------DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VW 615 (1715)
..+.+...|+|.+.++... -|.|+.++. .+..++.+..|-..-+.|+|||++..++++=+..+.|.-|
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~ 190 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRY 190 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEE
Confidence 4566788889888776444 133444443 5777777777666668999999655666666666888888
Q ss_pred ECCC--Cc---e--EEEEEcccceEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCcccc
Q 048801 616 DIWE--GT---P--IRIYEIGRFKLVDGKFSPDGTSIVLSDDVG-QIYLLNTGQGESQK 666 (1715)
Q Consensus 616 Dl~t--gk---~--l~tl~~h~~~V~svafSPDG~~LAsgs~DG-~I~IWdl~tGe~~k 666 (1715)
++.. +. . ...+....+..-.++...+|.+-+++-..| .|.+|+.. |+.+.
T Consensus 191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~ 248 (307)
T COG3386 191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLG 248 (307)
T ss_pred ecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEE
Confidence 8752 21 1 111111223334556666777665444443 77777776 66554
No 447
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.56 E-value=26 Score=41.29 Aligned_cols=146 Identities=18% Similarity=0.111 Sum_probs=81.5
Q ss_pred CeEEEEECCCCCEEEEEe---CCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEe-cCCC
Q 048801 287 DITDLAVSSNNTLVASAS---NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD-ARYS 362 (1715)
Q Consensus 287 ~VtsLafSpDg~lLASGS---~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWD-l~tg 362 (1715)
.+.+.++++++..+|... ....++++. .+.....+. ....++...|.+++. ..+....+...+++. ...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~g~---~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPDGW---VWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCCCC---EEEEEcCCCceEEEEecCCC
Confidence 788999999999887766 233455554 343333332 223788889999965 444445555566663 2222
Q ss_pred CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec---CCCeEEEEeCCCCCccCCCCCce
Q 048801 363 QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS---SDTFARVWSACKSSVEDSEQPIH 439 (1715)
Q Consensus 363 ~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs---~DG~IrVWDl~t~~~~~~~~~~~ 439 (1715)
..... .... ......|..+.+||||..+|.-. .++.|.|--+....-........
T Consensus 99 ~~~~~-~v~~---------------------~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~ 156 (253)
T PF10647_consen 99 TGEPV-EVDW---------------------PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTG 156 (253)
T ss_pred cceeE-Eecc---------------------cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceecc
Confidence 21111 0000 00011799999999998776654 35777776654321100001111
Q ss_pred eeeeecCCCCCeeEEEEccCc
Q 048801 440 ELDVLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 440 ~l~~l~gH~~~V~sLafspdg 460 (1715)
.+.........+..+.|.+++
T Consensus 157 ~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 157 PRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred ceEecccccCcceeeeecCCC
Confidence 222333345688899999875
No 448
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.39 E-value=22 Score=43.10 Aligned_cols=147 Identities=18% Similarity=0.165 Sum_probs=71.2
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecC
Q 048801 281 CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360 (1715)
Q Consensus 281 L~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~ 360 (1715)
...-.+.+..+..++||++|++++.-..+.-|+--...-...-+.-...|..|.|.|++. |......|.|++=+..
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~----lw~~~~Gg~~~~s~~~ 215 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN----LWMLARGGQIQFSDDP 215 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-----EEEEETTTEEEEEE-T
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCC----EEEEeCCcEEEEccCC
Confidence 345567899999999999998887666666787432222222233567899999999975 4444578888877621
Q ss_pred CCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCcee
Q 048801 361 YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHE 440 (1715)
Q Consensus 361 tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~ 440 (1715)
.. ......+ ..........+..++|.+++...|+|+. |.+ +.....++ ..+.
T Consensus 216 ~~--~~~w~~~------------------~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGk------tW~~ 267 (302)
T PF14870_consen 216 DD--GETWSEP------------------IIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGK------TWQK 267 (302)
T ss_dssp TE--EEEE---------------------B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTS------S-EE
T ss_pred CC--ccccccc------------------cCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCc------cceE
Confidence 11 0111000 0011122445899999999888887765 444 33443332 2222
Q ss_pred eeeecCCCCCeeEEEEccC
Q 048801 441 LDVLSGHENDVNYVQFSGC 459 (1715)
Q Consensus 441 l~~l~gH~~~V~sLafspd 459 (1715)
......-...+..|.|.+.
T Consensus 268 ~~~~~~~~~n~~~i~f~~~ 286 (302)
T PF14870_consen 268 DRVGENVPSNLYRIVFVNP 286 (302)
T ss_dssp -GGGTTSSS---EEEEEET
T ss_pred CccccCCCCceEEEEEcCC
Confidence 2223333446777888653
No 449
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.91 E-value=11 Score=51.18 Aligned_cols=166 Identities=19% Similarity=0.206 Sum_probs=93.2
Q ss_pred ccCceEEEEcCCCeEEEEecCCCccCccccccccc-ccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC--CCCEE
Q 048801 484 FCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRA-YHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL--DNRFV 560 (1715)
Q Consensus 484 ~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP--DG~~L 560 (1715)
.+...|+.++.|+.|.-.|..+++..-.++..... ....+.. ....-..+.-+| .+..|
T Consensus 258 ~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~------------------~~~g~~~~ts~P~V~~g~V 319 (764)
T TIGR03074 258 DCARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGT------------------TPPGYYYPTSPPLVAGTTV 319 (764)
T ss_pred ccCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCc------------------CCCcccccccCCEEECCEE
Confidence 34678889999999999999998765433211000 0000000 000000000111 13345
Q ss_pred EEEec----------CCeEEEEECCCCceEEEEecC---------CCC--------e-EEEEEccCCCcEEEE-E-----
Q 048801 561 LAAIM----------DCRICVWNAVDGSLVHSLTGH---------SAS--------S-YVLDVHPFNPRIAMS-A----- 606 (1715)
Q Consensus 561 aTgs~----------DGtI~IWDl~sg~~l~tL~gH---------~~~--------V-~sLafSP~dg~lLaS-g----- 606 (1715)
++|+. +|.|+-+|+.+|+++..+..- .+. + ..+++.+..+.+++- |
T Consensus 320 IvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd 399 (764)
T TIGR03074 320 VIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPD 399 (764)
T ss_pred EEEecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCcccc
Confidence 55532 688999999999998877421 011 1 123333322222111 0
Q ss_pred -----------eCCCcEEEEECCCCceEEEEEcccceEEE---------EEEcC-CCC---EEEEEeCCCeEEEEECCCC
Q 048801 607 -----------GYDGRTIVWDIWEGTPIRIYEIGRFKLVD---------GKFSP-DGT---SIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 607 -----------s~DGtI~VWDl~tgk~l~tl~~h~~~V~s---------vafSP-DG~---~LAsgs~DG~I~IWdl~tG 662 (1715)
...+.|.-.|+.+|+....++..+..+++ +.+.. +|+ .|+.++.+|.++++|-.+|
T Consensus 400 ~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG 479 (764)
T TIGR03074 400 QWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTG 479 (764)
T ss_pred ccCCccccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCC
Confidence 13456777899999999888753322221 22333 664 7889999999999999999
Q ss_pred ccccc
Q 048801 663 ESQKD 667 (1715)
Q Consensus 663 e~~k~ 667 (1715)
+.+-.
T Consensus 480 ~~l~~ 484 (764)
T TIGR03074 480 EPIVP 484 (764)
T ss_pred CEEee
Confidence 87643
No 450
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.89 E-value=13 Score=46.91 Aligned_cols=135 Identities=14% Similarity=0.177 Sum_probs=87.6
Q ss_pred CCCEE-EEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcce----EEEEecCCCcEEEEecCCCCCcceecC
Q 048801 296 NNTLV-ASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIY----QLLSSSDDGTCRIWDARYSQYSPRIYL 370 (1715)
Q Consensus 296 Dg~lL-ASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~----~LaSgS~DGtVrIWDl~tg~~l~~i~~ 370 (1715)
+.++| .++.....++-.|++.|+.+..+.-|.. |+-+.+.|+..... .-+.|-.|..|.-||.+-...- .+..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~ 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAV 421 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeee
Confidence 44444 4555566788889999999999886665 88888888765321 1244556788888998622110 0000
Q ss_pred CCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCC
Q 048801 371 PKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEND 450 (1715)
Q Consensus 371 ~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~ 450 (1715)
. ............|++-..+| ++|+|+.+|.|++||-... .....+.+-..+
T Consensus 422 ~------------------q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~---------~AKTAlPgLG~~ 473 (644)
T KOG2395|consen 422 V------------------QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGR---------RAKTALPGLGDA 473 (644)
T ss_pred e------------------eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhh---------hhhhcccccCCc
Confidence 0 00011123446777777676 6888999999999997321 223456778889
Q ss_pred eeEEEEccCc
Q 048801 451 VNYVQFSGCA 460 (1715)
Q Consensus 451 V~sLafspdg 460 (1715)
|..|..+.+|
T Consensus 474 I~hVdvtadG 483 (644)
T KOG2395|consen 474 IKHVDVTADG 483 (644)
T ss_pred eeeEEeeccC
Confidence 9999988876
No 451
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=91.06 E-value=0.22 Score=67.56 Aligned_cols=77 Identities=23% Similarity=0.419 Sum_probs=68.7
Q ss_pred hHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHh
Q 048801 1636 IQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTL 1712 (1715)
Q Consensus 1636 ~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~~i 1712 (1715)
|...+..-+.++|.--|..||++.|++..|++.+|+.++.+..|+.+|.+||-.||..+-...+-|.++.+.....+
T Consensus 586 f~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~~dtv~~r~av~~~e~~~~~~ 662 (1051)
T KOG0955|consen 586 FAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNAKDTVYYRAAVRLRELIKKDF 662 (1051)
T ss_pred eeeccChhhcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhccCeehHhhhHHHHhhhhhHH
Confidence 34455566788899999999999999999999999999999999999999999999999999999999998876544
No 452
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=90.98 E-value=0.53 Score=53.32 Aligned_cols=103 Identities=14% Similarity=0.166 Sum_probs=63.9
Q ss_pred CCEEEEEeCCCcEEEEeCCC-CcEEEEecCCCCCeEE-EEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCC-CCeE
Q 048801 255 GRFVITGSDDRLVKIWSMET-AFCLASCRGHEGDITD-LAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHT-GAVT 331 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~t-gk~l~tL~gHs~~Vts-LafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~-~~Vt 331 (1715)
+.-|+.|+.+|.|.+|...- |.....+..-...|.+ |.--.++.+..+++.||.|+.|++.-++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 45688899999999998762 1111111222233333 3333466788999999999999998888777777676 4444
Q ss_pred EEEecCCCCcceEEEEe--cCCCcEEEEecC
Q 048801 332 AIAFSPRPSAIYQLLSS--SDDGTCRIWDAR 360 (1715)
Q Consensus 332 sLafSPdg~~~~~LaSg--S~DGtVrIWDl~ 360 (1715)
.+..+..+. .|+++ |.|..++.|++.
T Consensus 150 ~~ivv~sd~---~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 150 ELIVVGSDE---FLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeEEecCCc---eEEeeccccchhhhhcchh
Confidence 444443333 34444 555556666554
No 453
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.94 E-value=9.4 Score=46.13 Aligned_cols=156 Identities=14% Similarity=0.142 Sum_probs=78.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEEC-CCCC
Q 048801 240 RGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRL-PDGL 318 (1715)
Q Consensus 240 ~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl-~tg~ 318 (1715)
.+-.+.+..+..++||++|++++.-....-|+--...-...-+.-...|..|.|+|++.+.+.+ ..|.|++=+. ..+.
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 3445788999999999999998766666778754322222233356789999999998776655 7888888772 1211
Q ss_pred ceEE----EeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 319 PISV----LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 319 ~l~~----L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
.... +....-.+..++|.+++. ..+ ++..|+|.+ ....|+.=..... ..
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~---~wa-~gg~G~l~~-S~DgGktW~~~~~----------------------~~ 272 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNE---IWA-VGGSGTLLV-STDGGKTWQKDRV----------------------GE 272 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS----EEE-EESTT-EEE-ESSTTSS-EE-GG----------------------GT
T ss_pred ccccccCCcccCceeeEEEEecCCCC---EEE-EeCCccEEE-eCCCCccceECcc----------------------cc
Confidence 1111 112233578999998865 444 455565433 3333331111100 00
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCeEEEE
Q 048801 395 LQSHQILCCAYNANGTVFVTGSSDTFARVW 424 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~~LatGs~DG~IrVW 424 (1715)
.-...+..+.|..+.+-+|.| .+|.|.-|
T Consensus 273 ~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 273 NVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp TSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred CCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 113347788888777777776 57877555
No 454
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.36 E-value=53 Score=40.37 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=44.1
Q ss_pred CcccccCCCCCeeEEEeCC-------CCCEEEEEecCCeEEEEECCCCceEE---E-EecCCCCeEEEEEccCCCcEEEE
Q 048801 537 PRQRLLPTPRGVNMIVWSL-------DNRFVLAAIMDCRICVWNAVDGSLVH---S-LTGHSASSYVLDVHPFNPRIAMS 605 (1715)
Q Consensus 537 ~~~~l~~h~~~VtslafSP-------DG~~LaTgs~DGtI~IWDl~sg~~l~---t-L~gH~~~V~sLafSP~dg~lLaS 605 (1715)
+...+..| ..+..+.|-. .|.+|++.-..+.|....+..+..+. . +......+..|++.| ++.++++
T Consensus 245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p-DG~Lyv~ 322 (331)
T PF07995_consen 245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP-DGALYVS 322 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET-TSEEEEE
T ss_pred cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC-CCeEEEE
Confidence 33334434 4566666653 55677766667788888876553322 2 223455789999999 6777777
Q ss_pred EeCCCcEE
Q 048801 606 AGYDGRTI 613 (1715)
Q Consensus 606 gs~DGtI~ 613 (1715)
...+|.|.
T Consensus 323 ~d~~G~iy 330 (331)
T PF07995_consen 323 DDSDGKIY 330 (331)
T ss_dssp E-TTTTEE
T ss_pred ECCCCeEe
Confidence 77788764
No 455
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.15 E-value=2.7 Score=56.65 Aligned_cols=140 Identities=9% Similarity=-0.009 Sum_probs=85.7
Q ss_pred CCeEEEEECCCCCEEEEE--eCCCeeEEEECCCCCc--------eE---EEeCCCCCeEEEEecCCCCcceEEEEecCCC
Q 048801 286 GDITDLAVSSNNTLVASA--SNDFVIRVWRLPDGLP--------IS---VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG 352 (1715)
Q Consensus 286 ~~VtsLafSpDg~lLASG--S~DGtIrVWDl~tg~~--------l~---~L~gH~~~VtsLafSPdg~~~~~LaSgS~DG 352 (1715)
-+|..+..++|++..++. +.+-.|.++|+.+-.. ++ +.......+.++.|.|.-.. ..+.+..|+
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~--n~av~l~dl 178 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPL--NSAVDLSDL 178 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccc--hhhhhcccc
Confidence 366677777887665554 3444788999865321 11 11222345678889887543 466777888
Q ss_pred cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCcc
Q 048801 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVE 432 (1715)
Q Consensus 353 tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~ 432 (1715)
.|++..+....... .........+|++|+|.|..+++|-..|++.-|...-..
T Consensus 179 sl~V~~~~~~~~~v-------------------------~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei-- 231 (1405)
T KOG3630|consen 179 SLRVKSTKQLAQNV-------------------------TSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI-- 231 (1405)
T ss_pred chhhhhhhhhhhhh-------------------------cccCcccceeeEEeccccceeeEecCCCeEEEeecccce--
Confidence 88887654222110 011224458999999999999999999999888764210
Q ss_pred CCCCCceeeeeecCC-CCCeeEEEEccC
Q 048801 433 DSEQPIHELDVLSGH-ENDVNYVQFSGC 459 (1715)
Q Consensus 433 ~~~~~~~~l~~l~gH-~~~V~sLafspd 459 (1715)
...+...... ...|.+|.|...
T Consensus 232 -----k~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 232 -----KSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred -----eecccCCCcCCCcceeEEEEecc
Confidence 0011111111 457889998764
No 456
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.98 E-value=19 Score=41.23 Aligned_cols=174 Identities=13% Similarity=0.158 Sum_probs=98.0
Q ss_pred EEEEEeCCCcEEEEe--CCCCcEEEEecC-----CCCCeEEEEECCCCCEEEEEeCC---------CeeEEEECCCCCce
Q 048801 257 FVITGSDDRLVKIWS--METAFCLASCRG-----HEGDITDLAVSSNNTLVASASND---------FVIRVWRLPDGLPI 320 (1715)
Q Consensus 257 ~LaTGS~DGtIrIWD--l~tgk~l~tL~g-----Hs~~VtsLafSpDg~lLASGS~D---------GtIrVWDl~tg~~l 320 (1715)
+.+.++.--.|.=|| .+.....+++.. .....++-..+|+|++.+-.-.| |.++.|-. +..+
T Consensus 73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--~h~v 150 (310)
T KOG4499|consen 73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--GHQV 150 (310)
T ss_pred EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEecc--CCCc
Confidence 344444433455566 233344444321 13455666789999984432222 44555543 2233
Q ss_pred EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEe--cCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCc
Q 048801 321 SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD--ARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH 398 (1715)
Q Consensus 321 ~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWD--l~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~ 398 (1715)
..+...-+--+.|+|..+.+. ..++-+.+-+|.-|| ..+|....+-.+..-. ...+.. ..
T Consensus 151 ~~i~~~v~IsNgl~Wd~d~K~--fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlr-----------k~~~~e-----~~ 212 (310)
T KOG4499|consen 151 ELIWNCVGISNGLAWDSDAKK--FYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLR-----------KSQPFE-----SL 212 (310)
T ss_pred eeeehhccCCccccccccCcE--EEEEccCceEEeeeecCCCcccccCcceeEEec-----------cCCCcC-----CC
Confidence 333333344577899977663 445667777887787 6666644321110000 000000 11
Q ss_pred ceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccC
Q 048801 399 QILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGC 459 (1715)
Q Consensus 399 ~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspd 459 (1715)
.--.+++..+|.+.++.-..|+|...|..++++ +..+.-....|+|++|-..
T Consensus 213 ~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~---------L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 213 EPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKI---------LLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCCcceEccCCcEEEEEecCcEEEEECCCCCcE---------EEEEEcCCCceEEEEecCC
Confidence 112344566899999998999999999998754 5556666889999999764
No 457
>PHA03098 kelch-like protein; Provisional
Probab=89.82 E-value=8.6 Score=50.23 Aligned_cols=64 Identities=6% Similarity=-0.047 Sum_probs=35.0
Q ss_pred CCCEEEEEecC------CeEEEEECCCCceEEE--EecCCCCeEEEEEccCCCcEEEEEeCCC--------cEEEEECCC
Q 048801 556 DNRFVLAAIMD------CRICVWNAVDGSLVHS--LTGHSASSYVLDVHPFNPRIAMSAGYDG--------RTIVWDIWE 619 (1715)
Q Consensus 556 DG~~LaTgs~D------GtI~IWDl~sg~~l~t--L~gH~~~V~sLafSP~dg~lLaSgs~DG--------tI~VWDl~t 619 (1715)
++.+++.|+.+ ..+.+||+.+.+-... +....... +++. . ++.+++.||.++ .+.+||..+
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~-~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY-H-DGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE-E-CCEEEEECCccCCCCCcccceEEEecCCC
Confidence 67777777732 3588899876543221 11111111 1222 2 567777777532 378888876
Q ss_pred Cce
Q 048801 620 GTP 622 (1715)
Q Consensus 620 gk~ 622 (1715)
++-
T Consensus 466 ~~W 468 (534)
T PHA03098 466 NKW 468 (534)
T ss_pred Cce
Confidence 643
No 458
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.82 E-value=3 Score=56.20 Aligned_cols=142 Identities=11% Similarity=-0.030 Sum_probs=88.2
Q ss_pred CCCeeEEEeCCCCCEEEEEe--cCCeEEEEECCCCceE-----EEEec------CCCCeEEEEEccCCCcEEEEEeCCCc
Q 048801 545 PRGVNMIVWSLDNRFVLAAI--MDCRICVWNAVDGSLV-----HSLTG------HSASSYVLDVHPFNPRIAMSAGYDGR 611 (1715)
Q Consensus 545 ~~~VtslafSPDG~~LaTgs--~DGtI~IWDl~sg~~l-----~tL~g------H~~~V~sLafSP~dg~lLaSgs~DGt 611 (1715)
.-.|..++..+|+...++.. .+-.|+.||+.+...- .-|.. ...-+.++.|.|.=....+.+..|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 34566677777877665543 3447899998763221 11111 22345677888865566677788999
Q ss_pred EEEEECCCC-ceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc----------ccccceeecCCCcc
Q 048801 612 TIVWDIWEG-TPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK----------DAKYDQFFLGDYRP 680 (1715)
Q Consensus 612 I~VWDl~tg-k~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k----------~~~~~~~fs~D~r~ 680 (1715)
|.|..+..- ..+..+. ....+++++|+|.|+.|++|...|.+.-|.. +++... ..+..+.|...+..
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeE
Confidence 999877532 2223333 3446789999999999999999999988875 333221 11223456666666
Q ss_pred EEEcCCCC
Q 048801 681 LIRDSLGN 688 (1715)
Q Consensus 681 L~~d~~g~ 688 (1715)
|++-.++.
T Consensus 258 lvvy~n~t 265 (1405)
T KOG3630|consen 258 LVVYGNVT 265 (1405)
T ss_pred EEEecccc
Confidence 66544433
No 459
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.60 E-value=40 Score=45.63 Aligned_cols=88 Identities=10% Similarity=0.140 Sum_probs=55.1
Q ss_pred CcceeEEEEccCCCeEEEecCCCeEEEEeCCC----CCccCCCCCceeee-------eecCCCCCeeEEEEccCcccccc
Q 048801 397 SHQILCCAYNANGTVFVTGSSDTFARVWSACK----SSVEDSEQPIHELD-------VLSGHENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 397 ~~~VtslafSpdG~~LatGs~DG~IrVWDl~t----~~~~~~~~~~~~l~-------~l~gH~~~V~sLafspdg~as~~ 465 (1715)
...|..|.++++|.+|+..|..|.+.+.=.+. +..........+.. ....+...|..+.|+|.+.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~---- 159 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSE---- 159 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCC----
Confidence 45799999999999999988866544432221 11111111111110 1123445788899998651
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCc
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 507 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~ 507 (1715)
.+..|+.-..|+++++||+....
T Consensus 160 -------------------~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 160 -------------------SDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred -------------------CCCeEEEEecCCEEEEEecCCCC
Confidence 24688899999999999997544
No 460
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=89.48 E-value=29 Score=43.64 Aligned_cols=115 Identities=12% Similarity=0.038 Sum_probs=58.1
Q ss_pred CCCEEEEEe-CCCcEEEEeCCC----CcEEEEecC---CC----CCeEEEEECCCCCEEEEEe--C----CCeeEEEECC
Q 048801 254 SGRFVITGS-DDRLVKIWSMET----AFCLASCRG---HE----GDITDLAVSSNNTLVASAS--N----DFVIRVWRLP 315 (1715)
Q Consensus 254 DG~~LaTGS-~DGtIrIWDl~t----gk~l~tL~g---Hs----~~VtsLafSpDg~lLASGS--~----DGtIrVWDl~ 315 (1715)
+.++|+..+ ..+.|.|.|+.+ -++.+++.. +. ..-..+..-|+|.+++|+- . -|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777776 678999999874 344555442 11 1223344457898888852 2 2568888877
Q ss_pred CCCceEEEeCC---CCCeEEEEecCCCCcceEEEEecC--------------------CCcEEEEecCCCCCcceecCC
Q 048801 316 DGLPISVLRGH---TGAVTAIAFSPRPSAIYQLLSSSD--------------------DGTCRIWDARYSQYSPRIYLP 371 (1715)
Q Consensus 316 tg~~l~~L~gH---~~~VtsLafSPdg~~~~~LaSgS~--------------------DGtVrIWDl~tg~~l~~i~~~ 371 (1715)
+.......... ..--+.+.|.|..+ .++|... ..+|.+||+.+.+.++++.+.
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~n---vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg 241 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHN---VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG 241 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTT---EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCC---EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC
Confidence 77666665432 22345677777665 6676542 357999999999988888764
No 461
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=89.47 E-value=9.8 Score=48.69 Aligned_cols=116 Identities=15% Similarity=0.147 Sum_probs=72.0
Q ss_pred CCCeeEEEeCCC----CCEEEEEecCCeEEEEECC-----CCceEEEEecCCC---C--eEEEEEccCCCcEEEEEeCCC
Q 048801 545 PRGVNMIVWSLD----NRFVLAAIMDCRICVWNAV-----DGSLVHSLTGHSA---S--SYVLDVHPFNPRIAMSAGYDG 610 (1715)
Q Consensus 545 ~~~VtslafSPD----G~~LaTgs~DGtI~IWDl~-----sg~~l~tL~gH~~---~--V~sLafSP~dg~lLaSgs~DG 610 (1715)
-.-|..+.|.|- -..|++.-....|.||.+. .++.+..-..+-. + -..+.||| ...+|+.-....
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~d 134 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARD 134 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCc
Confidence 345888999984 3245556677899999884 2333333222211 1 24568999 555555444444
Q ss_pred cEEEEECCCC-ceE-EEEEcccceEEEEEEcCCCCEEEEE-eCCCeEEEEECCCC
Q 048801 611 RTIVWDIWEG-TPI-RIYEIGRFKLVDGKFSPDGTSIVLS-DDVGQIYLLNTGQG 662 (1715)
Q Consensus 611 tI~VWDl~tg-k~l-~tl~~h~~~V~svafSPDG~~LAsg-s~DG~I~IWdl~tG 662 (1715)
.-.+.++... ..+ ..+ ...+-|.|.+|.+||+.|+++ +..=.-+|||-.+.
T Consensus 135 vSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred eeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 3345565432 223 334 367789999999999998876 45557889996543
No 462
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.46 E-value=48 Score=44.90 Aligned_cols=79 Identities=15% Similarity=0.203 Sum_probs=54.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeeEEEECC---------CCCce---EEE--------eCCCCCeEEEEecCCCCcceE
Q 048801 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLP---------DGLPI---SVL--------RGHTGAVTAIAFSPRPSAIYQ 344 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~DGtIrVWDl~---------tg~~l---~~L--------~gH~~~VtsLafSPdg~~~~~ 344 (1715)
.-.|..|.++++|.+||..+..|.+.+.=.. .|... +++ ..+...|..+.|+|.+.....
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3478899999999999998887654443211 12211 111 134567999999998633338
Q ss_pred EEEecCCCcEEEEecCCCC
Q 048801 345 LLSSSDDGTCRIWDARYSQ 363 (1715)
Q Consensus 345 LaSgS~DGtVrIWDl~tg~ 363 (1715)
|+.-..|+++++||+....
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 8899999999999997544
No 463
>PRK13684 Ycf48-like protein; Provisional
Probab=89.32 E-value=16 Score=44.85 Aligned_cols=153 Identities=12% Similarity=0.049 Sum_probs=87.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEE-EeCCCCcEEEEe-cCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCce
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKI-WSMETAFCLASC-RGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPI 320 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrI-WDl~tgk~l~tL-~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l 320 (1715)
.+.++++.+.+++.++++|. .|.+.. ++ ..++.-..+ ..-...++++++.++++.+++| ..|.+++=..+.|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 46789999999988777664 454443 22 222322222 3345688999999999887765 4576654334444433
Q ss_pred EEEeC----CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCC
Q 048801 321 SVLRG----HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396 (1715)
Q Consensus 321 ~~L~g----H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h 396 (1715)
..... ....+.+++|.+++. ++.++.+|.|.. ....++.-..... ...-
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~----~~~~G~~G~v~~-S~d~G~tW~~~~~----------------------~~~~ 301 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGE----IWAGGGNGTLLV-SKDGGKTWEKDPV----------------------GEEV 301 (334)
T ss_pred ccccCCccccccceeeEEEcCCCC----EEEEcCCCeEEE-eCCCCCCCeECCc----------------------CCCC
Confidence 22221 123578899998764 555666776543 3333331111000 0001
Q ss_pred CcceeEEEEccCCCeEEEecCCCeEEEEeC
Q 048801 397 SHQILCCAYNANGTVFVTGSSDTFARVWSA 426 (1715)
Q Consensus 397 ~~~VtslafSpdG~~LatGs~DG~IrVWDl 426 (1715)
......+.|..++..+++| ..|.|..|+-
T Consensus 302 ~~~~~~~~~~~~~~~~~~G-~~G~il~~~~ 330 (334)
T PRK13684 302 PSNFYKIVFLDPEKGFVLG-QRGVLLRYVG 330 (334)
T ss_pred CcceEEEEEeCCCceEEEC-CCceEEEecC
Confidence 2347778888777777766 5688877654
No 464
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=89.24 E-value=0.89 Score=39.26 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=29.6
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 048801 630 RFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 630 ~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe 663 (1715)
...|..++|+|...+||.+..+|.|.|+.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 446889999999999999999999999999 554
No 465
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=88.83 E-value=0.25 Score=66.89 Aligned_cols=107 Identities=16% Similarity=0.237 Sum_probs=86.1
Q ss_pred CCCCChHHHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 048801 1605 HPEIDSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVML 1684 (1715)
Q Consensus 1605 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~ 1684 (1715)
+|.++.+.+-+. ..++.+...+....+...|..+++.-.-.+|...+..|+++++|.+-..-+=|-++++...||+.|.
T Consensus 1373 nplld~~d~v~~-~~~d~~vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~ 1451 (1563)
T KOG0008|consen 1373 NPLLDDDDQVAF-FILDNIVSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIY 1451 (1563)
T ss_pred CcccCccchhhH-hhhhhHHHHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhc
Confidence 455666555444 5555554444555666778888887777889899999999999999999999988899999999999
Q ss_pred hhhhhccCCChHHHHHHHHHHHHHHHHh
Q 048801 1685 SNAESYFIKNAALSAKVERLRDWFNRTL 1712 (1715)
Q Consensus 1685 ~Na~~~n~~~~~i~~~~~~l~~~~~~~i 1712 (1715)
+|+..||.+++.-..+||.+-+..+..|
T Consensus 1452 ~n~~~~ng~e~~y~~k~~k~~ev~~~~~ 1479 (1563)
T KOG0008|consen 1452 VNSVEYNGAESAYTKKARKIGEVGLANL 1479 (1563)
T ss_pred ccceeecCccccccHHHHHHHHHHHHHH
Confidence 9999999999999999998887766544
No 466
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=88.40 E-value=1.3 Score=38.26 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=30.2
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCc
Q 048801 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLP 319 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~ 319 (1715)
...|.+++|+|...+||.|+.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 5544
No 467
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=87.65 E-value=1 Score=58.91 Aligned_cols=71 Identities=13% Similarity=0.087 Sum_probs=45.1
Q ss_pred eCCCCCEEEEEecCCeEEEEECC-----CCceEEEEecCC-CCeEEEEEccCC------C--cEEEEEe-CCCcEEEEEC
Q 048801 553 WSLDNRFVLAAIMDCRICVWNAV-----DGSLVHSLTGHS-ASSYVLDVHPFN------P--RIAMSAG-YDGRTIVWDI 617 (1715)
Q Consensus 553 fSPDG~~LaTgs~DGtI~IWDl~-----sg~~l~tL~gH~-~~V~sLafSP~d------g--~lLaSgs-~DGtI~VWDl 617 (1715)
+||||..|++++.||.++.|.+. ..++++..+.|. .+-.|.-|+... + .++++++ ....+++|..
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 79999999999999998888653 344566666776 333333333210 1 2334443 3456888987
Q ss_pred CCCceE
Q 048801 618 WEGTPI 623 (1715)
Q Consensus 618 ~tgk~l 623 (1715)
...+|+
T Consensus 323 a~w~Cl 328 (1283)
T KOG1916|consen 323 APWQCL 328 (1283)
T ss_pred cchhhh
Confidence 777776
No 468
>PHA03098 kelch-like protein; Provisional
Probab=87.16 E-value=14 Score=48.24 Aligned_cols=64 Identities=9% Similarity=0.009 Sum_probs=34.9
Q ss_pred CCCCEEEEEeCCC------cEEEEeCCCCcEEEE--ecCCCCCeEEEEECCCCCEEEEEeCC-----CeeEEEECCCCC
Q 048801 253 RSGRFVITGSDDR------LVKIWSMETAFCLAS--CRGHEGDITDLAVSSNNTLVASASND-----FVIRVWRLPDGL 318 (1715)
Q Consensus 253 pDG~~LaTGS~DG------tIrIWDl~tgk~l~t--L~gHs~~VtsLafSpDg~lLASGS~D-----GtIrVWDl~tg~ 318 (1715)
.++.+++.||.++ .+..||..+.+-... +.........+. -++.+++.|+.+ ..+.+||..+..
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 3456677776542 577888776644221 111111222222 267777888765 347778876653
No 469
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=86.63 E-value=82 Score=37.97 Aligned_cols=228 Identities=15% Similarity=0.194 Sum_probs=120.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCC------CC-cEEEEecC-----CCCCeEEEEECCCCC------------EEE
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSME------TA-FCLASCRG-----HEGDITDLAVSSNNT------------LVA 301 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~------tg-k~l~tL~g-----Hs~~VtsLafSpDg~------------lLA 301 (1715)
-+.|+|+|.+.+-++....+...+||.. .. .++-++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 3568899999887777778999999986 12 23334432 234678888875332 256
Q ss_pred EEeCCCeeEEEECCCCCc-----eEEEe-CCCCCe-EEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCC
Q 048801 302 SASNDFVIRVWRLPDGLP-----ISVLR-GHTGAV-TAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPP 374 (1715)
Q Consensus 302 SGS~DGtIrVWDl~tg~~-----l~~L~-gH~~~V-tsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~ 374 (1715)
.+++||+|.-|...-+.. ...+. +..+.| ..+++...+...++.++--..++|.++|-.-.... ++..
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~----~~g~- 179 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP----LPGS- 179 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc----CCCC-
Confidence 778999999998533222 12222 112333 45666654332234455566888999875422210 1000
Q ss_pred CCccCccCCCCCCCCCCCC-CCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee--cCCCCCe
Q 048801 375 DAITGKSNVPSNNGPSSSN-GLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL--SGHENDV 451 (1715)
Q Consensus 375 ~~i~g~~~~~~~~~~~~~~-~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l--~gH~~~V 451 (1715)
.. ...++....+.-.. ....-.|+-..-.+++..=+.|..-|.|-+||+.. +.++.+ .+.-+.-
T Consensus 180 --F~-DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G----------~l~~r~as~g~LNaP 246 (336)
T TIGR03118 180 --FI-DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG----------QLLRRVASSGRLNAP 246 (336)
T ss_pred --cc-CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC----------cEEEEeccCCcccCC
Confidence 00 00000000000000 00011122222234444444555668999999864 233333 2223344
Q ss_pred eEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcc
Q 048801 452 NYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGK 511 (1715)
Q Consensus 452 ~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~ 511 (1715)
+.|+..|.... .++..+|+----||+|.+||..+++.++.
T Consensus 247 WG~a~APa~FG--------------------~~sg~lLVGNFGDG~InaFD~~sG~~~g~ 286 (336)
T TIGR03118 247 WGLAIAPESFG--------------------SLSGALLVGNFGDGTINAYDPQSGAQLGQ 286 (336)
T ss_pred ceeeeChhhhC--------------------CCCCCeEEeecCCceeEEecCCCCceeee
Confidence 55666554321 13356777777899999999987664433
No 470
>PRK10115 protease 2; Provisional
Probab=86.62 E-value=1.4e+02 Score=40.61 Aligned_cols=72 Identities=14% Similarity=0.135 Sum_probs=46.0
Q ss_pred CeEEEEECCCCCEEEEEeC-----CCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCC-----CcEEE
Q 048801 287 DITDLAVSSNNTLVASASN-----DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD-----GTCRI 356 (1715)
Q Consensus 287 ~VtsLafSpDg~lLASGS~-----DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D-----GtVrI 356 (1715)
.+..+.+||||++|+.+.. ...|++-|+.+|..+....... -..++|++++.. ++++...+ ..|..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~--~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWT--FYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCE--EEEEEecCCCCCCCEEEE
Confidence 4667889999998887633 2358899998887443222121 256999999874 23332222 35677
Q ss_pred EecCCC
Q 048801 357 WDARYS 362 (1715)
Q Consensus 357 WDl~tg 362 (1715)
|++.++
T Consensus 204 h~lgt~ 209 (686)
T PRK10115 204 HTIGTP 209 (686)
T ss_pred EECCCC
Confidence 777766
No 471
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.53 E-value=60 Score=43.05 Aligned_cols=51 Identities=18% Similarity=0.346 Sum_probs=40.8
Q ss_pred CCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCC
Q 048801 306 DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY 361 (1715)
Q Consensus 306 DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~t 361 (1715)
--.|+|+++ +|..+..+....+.+..+.|+.+. .|++...+|++++|++..
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e----eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE----ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCc----eEEEEeccceEEEeecch
Confidence 346888886 677777766555689999999986 588999999999999853
No 472
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=85.18 E-value=96 Score=37.42 Aligned_cols=75 Identities=16% Similarity=0.187 Sum_probs=52.3
Q ss_pred CCCCCEEEEEecCCeEEEEECCCCceEEEEe--cCCCCeEEEEEcc-----CCCcEEEEEeCCCcEEEEECCCCceEEEE
Q 048801 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLT--GHSASSYVLDVHP-----FNPRIAMSAGYDGRTIVWDIWEGTPIRIY 626 (1715)
Q Consensus 554 SPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~--gH~~~V~sLafSP-----~dg~lLaSgs~DGtI~VWDl~tgk~l~tl 626 (1715)
.++...=+.|..-|.|-+||+ +|.+++.+. +.-..-+.|+..| ..+.+|+---.||+|..+|..+|+.+..+
T Consensus 209 d~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 209 DADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQL 287 (336)
T ss_pred CCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeee
Confidence 344444444556678999996 688888773 3333446666544 35678876667999999999999988877
Q ss_pred Ecc
Q 048801 627 EIG 629 (1715)
Q Consensus 627 ~~h 629 (1715)
...
T Consensus 288 ~~~ 290 (336)
T TIGR03118 288 LDP 290 (336)
T ss_pred cCC
Confidence 743
No 473
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=84.38 E-value=1e+02 Score=36.95 Aligned_cols=160 Identities=15% Similarity=0.059 Sum_probs=85.0
Q ss_pred EcCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC
Q 048801 239 LRGHR-DAVYCAIFDRSGRFVITGSDDRLVKIWSMETA--FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP 315 (1715)
Q Consensus 239 L~GH~-~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg--k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~ 315 (1715)
+.||- ..|..+.....-.++.+|-.--.+-+|+.... ..+...-.-.+-+.++.|+. .++..+.++.-++|.|+.
T Consensus 37 ~vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse--~yvyvad~ssGL~IvDIS 114 (370)
T COG5276 37 YVGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVSE--EYVYVADWSSGLRIVDIS 114 (370)
T ss_pred EeeeccCCcccccccccccccccCceEeeccccCcccccCcceEEEEehhhhhheeEecc--cEEEEEcCCCceEEEecc
Confidence 45565 45666655544444444422222345554311 11111222345667778864 467777788889999998
Q ss_pred CCCceEEEeC--CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCC
Q 048801 316 DGLPISVLRG--HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSN 393 (1715)
Q Consensus 316 tg~~l~~L~g--H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~ 393 (1715)
+...-..+.. -.+--.++..+- + ++..+..|.-+.+.|+.+...- .+ .|. .
T Consensus 115 ~P~sP~~~~~lnt~gyaygv~vsG--n---~aYVadlddgfLivdvsdpssP-~l---------agr------------y 167 (370)
T COG5276 115 TPDSPTLIGFLNTDGYAYGVYVSG--N---YAYVADLDDGFLIVDVSDPSSP-QL---------AGR------------Y 167 (370)
T ss_pred CCCCcceeccccCCceEEEEEecC--C---EEEEeeccCcEEEEECCCCCCc-ee---------eee------------e
Confidence 7643332211 123445555554 3 6666665666778888754421 10 011 0
Q ss_pred CCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCC
Q 048801 394 GLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 394 ~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~ 429 (1715)
.........++.| |++..++..|+-+.|-|+...
T Consensus 168 a~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp 201 (370)
T COG5276 168 ALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNP 201 (370)
T ss_pred ccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCC
Confidence 0111122445554 556666778889999999764
No 474
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=83.87 E-value=36 Score=42.86 Aligned_cols=142 Identities=10% Similarity=0.056 Sum_probs=85.2
Q ss_pred CCCEEE-EEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCC--------CEEEEEeCCCeeEEEECC-CCCceEEE
Q 048801 254 SGRFVI-TGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNN--------TLVASASNDFVIRVWRLP-DGLPISVL 323 (1715)
Q Consensus 254 DG~~La-TGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg--------~lLASGS~DGtIrVWDl~-tg~~l~~L 323 (1715)
|..+|+ .|+....+.--|++-|+.+..+.-|..- -+.|.|+. +.|+--|.. .|.-.|.+ .|..+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~-svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDY-SVFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeeccc-ceEEecccccCCceeee
Confidence 444444 4445566777788899999998877765 46777753 344444444 34333433 34333332
Q ss_pred eC----CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcc
Q 048801 324 RG----HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ 399 (1715)
Q Consensus 324 ~g----H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~ 399 (1715)
.. ......|..-...| +++.++..|-|++||--.-.. .....+-+..
T Consensus 555 esKdY~tKn~Fss~~tTesG----yIa~as~kGDirLyDRig~rA-------------------------KtalP~lG~a 605 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTESG----YIAAASRKGDIRLYDRIGKRA-------------------------KTALPGLGDA 605 (776)
T ss_pred eehhccccccccccccccCc----eEEEecCCCceeeehhhcchh-------------------------hhcCcccccc
Confidence 21 11222333333333 899999999999998532111 0111223567
Q ss_pred eeEEEEccCCCeEEEecCCCeEEEEeCCC
Q 048801 400 ILCCAYNANGTVFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 400 VtslafSpdG~~LatGs~DG~IrVWDl~t 428 (1715)
|..+..+.+|.++++.|. ..+.+-|+.-
T Consensus 606 Ik~idvta~Gk~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 606 IKHIDVTANGKHILATCK-NYLLLTDVPI 633 (776)
T ss_pred eeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence 899999999999887764 6777888753
No 475
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=83.63 E-value=62 Score=40.83 Aligned_cols=149 Identities=10% Similarity=0.052 Sum_probs=86.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcE--EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCc--
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFC--LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLP-- 319 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~--l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~-- 319 (1715)
+....+..++||.+++.|..-..++-||- |.. ...-......++.+.|.+++.+++++ ..|.+ +|....+..
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~ 314 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEE 314 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccc
Confidence 34556677888888887754433344443 322 11222335578999999999888766 55554 445455542
Q ss_pred ---eEEEeC--CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 320 ---ISVLRG--HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 320 ---l~~L~g--H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
...+.. -...++++.|.+++. ++.++..|.+.... ..|+.-..... ..
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~~----~~a~G~~G~v~~s~-D~G~tW~~~~~----------------------~~ 367 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKKE----AWAAGGSGILLRST-DGGKSWKRDKG----------------------AD 367 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCCc----EEEEECCCcEEEeC-CCCcceeEccc----------------------cC
Confidence 222221 123589999998874 67777788776653 23321111000 00
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCeEEEE
Q 048801 395 LQSHQILCCAYNANGTVFVTGSSDTFARVW 424 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~~LatGs~DG~IrVW 424 (1715)
.-...++.+.|.++++.+++| .+|.|.-|
T Consensus 368 ~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 368 NIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 112347789998888877776 46776554
No 476
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=83.24 E-value=19 Score=47.60 Aligned_cols=116 Identities=11% Similarity=0.135 Sum_probs=76.5
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEec-CCCCCeEEEEEC--CCCCEEEEEeCCCeeEEEECC
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR-GHEGDITDLAVS--SNNTLVASASNDFVIRVWRLP 315 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~-gHs~~VtsLafS--pDg~lLASGS~DGtIrVWDl~ 315 (1715)
+..--...+-+.-+.-++..++-+....+.|||...+.+...-. ...+.|.++.|. |+|+.+++.+....|.++.-.
T Consensus 25 ~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 25 FETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred EecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence 33333444455555555555555556689999999887544322 457889999995 588988888899999998531
Q ss_pred -----C----CCceEEE--eCCC-CCeEEEEecCCCCcceEEEEecCCCcEEEEec
Q 048801 316 -----D----GLPISVL--RGHT-GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359 (1715)
Q Consensus 316 -----t----g~~l~~L--~gH~-~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl 359 (1715)
. ..+++.+ ..|+ .+|.+..|.++| .|++|+. ..+.|+|-
T Consensus 105 R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G----~LvV~sG-Nqlfv~dk 155 (631)
T PF12234_consen 105 RYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG----TLVVGSG-NQLFVFDK 155 (631)
T ss_pred chhhhcCCcccceeEEEEeecCCCCCccceeEecCC----eEEEEeC-CEEEEECC
Confidence 1 1233333 3444 689999999998 4555553 45777763
No 477
>PHA02790 Kelch-like protein; Provisional
Probab=83.10 E-value=34 Score=44.27 Aligned_cols=99 Identities=9% Similarity=-0.127 Sum_probs=50.9
Q ss_pred CCCEEEEEecCC---eEEEEECCCCceEEE--EecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEE--EEEc
Q 048801 556 DNRFVLAAIMDC---RICVWNAVDGSLVHS--LTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIR--IYEI 628 (1715)
Q Consensus 556 DG~~LaTgs~DG---tI~IWDl~sg~~l~t--L~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~--tl~~ 628 (1715)
+|+..+.|+.++ .+..||..+.+-... +.........+++ ++.+.+.|| .+.+||..+++-.. .+..
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~---~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~ 435 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF---GRRLFLVGR---NAEFYCESSNTWTLIDDPIY 435 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE---CCEEEEECC---ceEEecCCCCcEeEcCCCCC
Confidence 677778877653 477888876543221 1111111112222 667777774 57788887664332 2221
Q ss_pred ccceEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCC
Q 048801 629 GRFKLVDGKFSPDGTSIVLSDDV-----GQIYLLNTGQG 662 (1715)
Q Consensus 629 h~~~V~svafSPDG~~LAsgs~D-----G~I~IWdl~tG 662 (1715)
.+... .+..-+|+..++||.+ ..+.+||..++
T Consensus 436 ~r~~~--~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 436 PRDNP--ELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred Ccccc--EEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 11111 1223366777777654 24556665544
No 478
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=82.39 E-value=38 Score=45.24 Aligned_cols=114 Identities=16% Similarity=0.196 Sum_probs=74.1
Q ss_pred CCCCeeEEEeCC--CCCEEEEEecCCeEEEEECCC-------C-------------ceEEEEecCCCCeEEEEEc--cCC
Q 048801 544 TPRGVNMIVWSL--DNRFVLAAIMDCRICVWNAVD-------G-------------SLVHSLTGHSASSYVLDVH--PFN 599 (1715)
Q Consensus 544 h~~~VtslafSP--DG~~LaTgs~DGtI~IWDl~s-------g-------------~~l~tL~gH~~~V~sLafS--P~d 599 (1715)
.+..|+.|...- +...|++|..||.|.+|.+.+ . ++...+. -...+++|+++ . .
T Consensus 99 ~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~ 176 (717)
T PF08728_consen 99 FPHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-K 176 (717)
T ss_pred CCceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-c
Confidence 445577766553 556889999999999997632 0 0112222 24468999998 5 5
Q ss_pred CcEEEEEeCCCcEEEEECCCC--ceEEE-EEcccceEEEEEEcCCC-----C-EEEEEeCCCeEEEEEC
Q 048801 600 PRIAMSAGYDGRTIVWDIWEG--TPIRI-YEIGRFKLVDGKFSPDG-----T-SIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 600 g~lLaSgs~DGtI~VWDl~tg--k~l~t-l~~h~~~V~svafSPDG-----~-~LAsgs~DG~I~IWdl 659 (1715)
.++||.++....|.||-+... +.... -..+...|-+|+|-++. . .|++++-.|.+.+|++
T Consensus 177 ~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 177 SRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 678888777777877755431 11110 11134467788887653 2 7888999999999888
No 479
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=82.37 E-value=0.42 Score=49.22 Aligned_cols=81 Identities=12% Similarity=0.077 Sum_probs=57.6
Q ss_pred HHHHHHhhhHHHhhhhccccchhhhhHHHHHH--hhhccccccCCCCCCHHHHHHHhhhh-------hhhhHHHHHHHHH
Q 048801 1611 ESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEA--AQKLDYLNRFPVPLYPEVIRLRLVNN-------YYRSLEAAKDDIN 1681 (1715)
Q Consensus 1611 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~i~~Rl~n~-------~Yr~~~~~~~d~~ 1681 (1715)
+.+++++..|.++.+ ...+..|..+++. ...++|...+..||||+||+.+|++. ||---+-.-.++.
T Consensus 3 e~~~~~l~~l~~~~~----~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~ 78 (114)
T cd05494 3 EALERVLRELKRHRR----NEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQI 78 (114)
T ss_pred HHHHHHHHHHHHhhh----CCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccc
Confidence 345667777777654 3566667777766 67899999999999999999999986 5543333445666
Q ss_pred HHHhhhhhccCCCh
Q 048801 1682 VMLSNAESYFIKNA 1695 (1715)
Q Consensus 1682 ~~~~Na~~~n~~~~ 1695 (1715)
++.-||.-+++...
T Consensus 79 ~~~~~~~~~~~~~~ 92 (114)
T cd05494 79 DDEGRRSPSNIYAV 92 (114)
T ss_pred ccccccCcccccch
Confidence 67777766666544
No 480
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=81.98 E-value=36 Score=43.92 Aligned_cols=117 Identities=9% Similarity=0.098 Sum_probs=71.5
Q ss_pred CCCCCeEEEEEcCCC----CEEEEEeCCCcEEEEeCC-----CCcEEEEecCCC---CC--eEEEEECCCCCEEEEEeCC
Q 048801 241 GHRDAVYCAIFDRSG----RFVITGSDDRLVKIWSME-----TAFCLASCRGHE---GD--ITDLAVSSNNTLVASASND 306 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG----~~LaTGS~DGtIrIWDl~-----tgk~l~tL~gHs---~~--VtsLafSpDg~lLASGS~D 306 (1715)
|.-..|..+.|.|-+ ..|.+......|.||.+. +.+.+..-..+- -+ -..+.|+|....|+.-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 444568899998843 234444566899999874 333333222111 11 1346799999888877666
Q ss_pred CeeEEEECCCC-Cce-EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecC
Q 048801 307 FVIRVWRLPDG-LPI-SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360 (1715)
Q Consensus 307 GtIrVWDl~tg-~~l-~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~ 360 (1715)
..-.++++... ..+ .-+ ...+-|.|.+|.+||.. ++++.+..=.-+|||-.
T Consensus 134 dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~R--LVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQR--LVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCE--EEEEeCCeEEEEEecCc
Confidence 55556666533 223 333 45678999999999983 33344444556788754
No 481
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=81.86 E-value=24 Score=41.73 Aligned_cols=113 Identities=12% Similarity=0.085 Sum_probs=78.2
Q ss_pred eeEEEeCCCCCEEEEEecCC--eEEEEECCCCceEEEEecC-CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEE
Q 048801 548 VNMIVWSLDNRFVLAAIMDC--RICVWNAVDGSLVHSLTGH-SASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIR 624 (1715)
Q Consensus 548 VtslafSPDG~~LaTgs~DG--tI~IWDl~sg~~l~tL~gH-~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~ 624 (1715)
...+.|..+|.++-+.+.-| .|+.+|+.+|+.+....-. .----.++.. +.++..-.-.++...+||..+.+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence 45678878888888887766 6999999999987665422 1122344443 34555556678999999999999999
Q ss_pred EEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 625 IYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 625 tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
++.- .+.-+.++ .||..|+.++....|+++|..+-+..
T Consensus 125 ~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~ 162 (264)
T PF05096_consen 125 TFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEV 162 (264)
T ss_dssp EEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEE
T ss_pred EEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceE
Confidence 8873 34455555 77888999999999999998766544
No 482
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=81.54 E-value=41 Score=44.97 Aligned_cols=145 Identities=9% Similarity=0.072 Sum_probs=89.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEE------Eec----------------CCCCCeEEEEECC--CCCEEEEEeCCCeeE
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLA------SCR----------------GHEGDITDLAVSS--NNTLVASASNDFVIR 310 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~------tL~----------------gHs~~VtsLafSp--Dg~lLASGS~DGtIr 310 (1715)
+.+|++|. .+.|.||+......+. .+. .....|+.|.+.. +...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 56777765 5789999875432211 110 0112355555443 456899999999999
Q ss_pred EEECCC-------C-------------CceEEEeCCCCCeEEEEec--CCCCcceEEEEecCCCcEEEEecCCCCCccee
Q 048801 311 VWRLPD-------G-------------LPISVLRGHTGAVTAIAFS--PRPSAIYQLLSSSDDGTCRIWDARYSQYSPRI 368 (1715)
Q Consensus 311 VWDl~t-------g-------------~~l~~L~gH~~~VtsLafS--Pdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i 368 (1715)
+|.+++ . ++-..+. -...+++|+++ .... +||+++....|.||-+...... .
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r---lIAVSsNs~~VTVFaf~l~~~r--~ 201 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR---LIAVSSNSQEVTVFAFALVDER--F 201 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce---EEEEecCCceEEEEEEeccccc--c
Confidence 997521 0 1122222 34578999998 5444 7888888888888865432100 0
Q ss_pred cCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-----C-eEEEecCCCeEEEEeC
Q 048801 369 YLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-----T-VFVTGSSDTFARVWSA 426 (1715)
Q Consensus 369 ~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-----~-~LatGs~DG~IrVWDl 426 (1715)
.......+.+.|.+|+|.++. . +|++++-.|.+.+|++
T Consensus 202 --------------------~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 202 --------------------YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred --------------------ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 000011256779999997643 2 7778888999999887
No 483
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.83 E-value=1.4e+02 Score=37.50 Aligned_cols=137 Identities=12% Similarity=0.082 Sum_probs=80.9
Q ss_pred EEEEECCCCCEEEEEeCCCeeEEEECCC---CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCc
Q 048801 289 TDLAVSSNNTLVASASNDFVIRVWRLPD---GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS 365 (1715)
Q Consensus 289 tsLafSpDg~lLASGS~DGtIrVWDl~t---g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l 365 (1715)
+.+-|...++.|++. ..|.+.=|-+.. .-++..-....++|.++.|++|++ .|+.--.+.+|.+++....+..
T Consensus 26 ngvFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk---ilAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK---ILAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred cceeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc---eEEEEecCceEEEEecCCCchh
Confidence 334444444444443 334455554432 233333344667999999999998 7899999999999987433321
Q ss_pred ceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeec
Q 048801 366 PRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS 445 (1715)
Q Consensus 366 ~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~ 445 (1715)
..... ........|...+|+.+- -+|.-+. ..+-+|..... ...++...
T Consensus 102 l~~~~---------------------~ck~k~~~IlGF~W~~s~-e~A~i~~-~G~e~y~v~pe--------krslRlVk 150 (657)
T KOG2377|consen 102 LEYTQ---------------------ECKTKNANILGFCWTSST-EIAFITD-QGIEFYQVLPE--------KRSLRLVK 150 (657)
T ss_pred hHHHH---------------------HhccCcceeEEEEEecCe-eEEEEec-CCeEEEEEchh--------hhhhhhhh
Confidence 11110 011123448888898763 4444433 33666665432 23355667
Q ss_pred CCCCCeeEEEEccCc
Q 048801 446 GHENDVNYVQFSGCA 460 (1715)
Q Consensus 446 gH~~~V~sLafspdg 460 (1715)
.|...|+...|.++.
T Consensus 151 s~~~nvnWy~yc~et 165 (657)
T KOG2377|consen 151 SHNLNVNWYMYCPET 165 (657)
T ss_pred hcccCccEEEEcccc
Confidence 788889999998875
No 484
>PHA02790 Kelch-like protein; Provisional
Probab=80.63 E-value=37 Score=43.89 Aligned_cols=62 Identities=10% Similarity=0.013 Sum_probs=33.1
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCcEEE--EecCCCCCeEEEEECCCCCEEEEEeCC--CeeEEEECCCC
Q 048801 254 SGRFVITGSDDR-----LVKIWSMETAFCLA--SCRGHEGDITDLAVSSNNTLVASASND--FVIRVWRLPDG 317 (1715)
Q Consensus 254 DG~~LaTGS~DG-----tIrIWDl~tgk~l~--tL~gHs~~VtsLafSpDg~lLASGS~D--GtIrVWDl~tg 317 (1715)
++.++++||.++ .+..||..+..-.. .+.........+ .-+|.+.+.|+.+ .++..||..++
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n 341 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDA 341 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCC
Confidence 355667777543 46678877654322 122111112222 2367777888764 35777886554
No 485
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=80.15 E-value=12 Score=47.01 Aligned_cols=92 Identities=14% Similarity=0.198 Sum_probs=66.9
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEE-EEEC-CC--------------
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITD-LAVS-SN-------------- 296 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~Vts-LafS-pD-------------- 296 (1715)
......|......+.+++.+|++++.|+...=|.|.|+|+.++..++.++|-.+.=.. +... ..
T Consensus 297 l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~ 376 (415)
T PF14655_consen 297 LPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSS 376 (415)
T ss_pred cceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCC
Confidence 3455667777888999999999999888877799999999999999888876543211 1111 11
Q ss_pred --CC-EEEEEeCCCeeEEEECCCCCceEEEe
Q 048801 297 --NT-LVASASNDFVIRVWRLPDGLPISVLR 324 (1715)
Q Consensus 297 --g~-lLASGS~DGtIrVWDl~tg~~l~~L~ 324 (1715)
.. +++-+-.-|.|-||.+.+|..+..+.
T Consensus 377 ~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 377 RFALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred cceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 11 23445668999999999988777665
No 486
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=80.04 E-value=2.9e+02 Score=39.24 Aligned_cols=28 Identities=11% Similarity=0.017 Sum_probs=20.4
Q ss_pred ccccCCCCCeeEEEeCCCCCEEEEEecC
Q 048801 539 QRLLPTPRGVNMIVWSLDNRFVLAAIMD 566 (1715)
Q Consensus 539 ~~l~~h~~~VtslafSPDG~~LaTgs~D 566 (1715)
....++-..+.++|.+|||..+++-..+
T Consensus 655 ~At~A~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 655 AATQAKLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred hhhccccCCcceEEECCCCcEEEecCCc
Confidence 3445566778999999999988765433
No 487
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=79.83 E-value=30 Score=43.02 Aligned_cols=99 Identities=14% Similarity=0.082 Sum_probs=56.7
Q ss_pred CeeEEEeCCCCCEEEEEe-----------cCC-eEEEEECCC--Cce--EEEEecCCCCeEEEEEccCCCcEEEEEeCCC
Q 048801 547 GVNMIVWSLDNRFVLAAI-----------MDC-RICVWNAVD--GSL--VHSLTGHSASSYVLDVHPFNPRIAMSAGYDG 610 (1715)
Q Consensus 547 ~VtslafSPDG~~LaTgs-----------~DG-tI~IWDl~s--g~~--l~tL~gH~~~V~sLafSP~dg~lLaSgs~DG 610 (1715)
....|+|.++|+++++-. ..+ .|.+++-.+ |.. ...+...-.....|++.+ ++ ++++ ...
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV~-~~~- 90 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYVA-TPP- 90 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEEe-CCC-
Confidence 456789999999887653 223 787776543 332 234443344567899988 55 5544 333
Q ss_pred cEEEE-ECCC-----CceEEE---EEcc----cceEEEEEEcCCCCEEEEEe
Q 048801 611 RTIVW-DIWE-----GTPIRI---YEIG----RFKLVDGKFSPDGTSIVLSD 649 (1715)
Q Consensus 611 tI~VW-Dl~t-----gk~l~t---l~~h----~~~V~svafSPDG~~LAsgs 649 (1715)
.|..| |... ++.... +... +.....++|.|||.+.++.+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 34433 4421 121111 2211 23366899999998776544
No 488
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=79.65 E-value=43 Score=41.69 Aligned_cols=95 Identities=16% Similarity=0.150 Sum_probs=54.1
Q ss_pred CCeEEEEEcCCCCEEEEEe-----------CCC-cEEEEeCCC--CcE--EEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 048801 244 DAVYCAIFDRSGRFVITGS-----------DDR-LVKIWSMET--AFC--LASCRGHEGDITDLAVSSNNTLVASASNDF 307 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS-----------~DG-tIrIWDl~t--gk~--l~tL~gHs~~VtsLafSpDg~lLASGS~DG 307 (1715)
....+|+|.++|+++++-. ..+ .|.+++-.+ |+. ...+.......+.|+|.++| +++ ++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 3456889999999877642 223 677776432 332 23443344456889999998 444 44443
Q ss_pred eeEEEECCC-C----CceEEEe---C----CCCCeEEEEecCCCC
Q 048801 308 VIRVWRLPD-G----LPISVLR---G----HTGAVTAIAFSPRPS 340 (1715)
Q Consensus 308 tIrVWDl~t-g----~~l~~L~---g----H~~~VtsLafSPdg~ 340 (1715)
.+++.+... + +....+. . +......++|.|++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~ 136 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW 136 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC
Confidence 333445431 1 2211222 1 234577899999986
No 489
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=79.20 E-value=53 Score=41.46 Aligned_cols=137 Identities=13% Similarity=0.141 Sum_probs=81.7
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEECCCCceE--EEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc----
Q 048801 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLV--HSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT---- 621 (1715)
Q Consensus 548 VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l--~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk---- 621 (1715)
...+..+++|.+++++.....++-|| .|... ..-......++++.|.+ ++.+++++ .+|.+ +|....|+
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l-~~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGL-YVSKGTGLTEED 315 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceE-EEecCCCCcccc
Confidence 45567788998888776544334444 33321 12223355688999988 56666544 55654 44555554
Q ss_pred -eEEEEEc--ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc---------cccccceeecCCCccEEEcCCCCe
Q 048801 622 -PIRIYEI--GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ---------KDAKYDQFFLGDYRPLIRDSLGNV 689 (1715)
Q Consensus 622 -~l~tl~~--h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~---------k~~~~~~~fs~D~r~L~~d~~g~v 689 (1715)
....... ....+.++.|.+++..+++| ..|.+.... ..|+.- ....|..+|.++.+..+...+|.+
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~i 393 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVL 393 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEE
Confidence 2232321 12358899999888765555 557666653 344331 123467778888888888888877
Q ss_pred ee
Q 048801 690 LD 691 (1715)
Q Consensus 690 ld 691 (1715)
|.
T Consensus 394 l~ 395 (398)
T PLN00033 394 LR 395 (398)
T ss_pred EE
Confidence 64
No 490
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=78.80 E-value=2e+02 Score=36.67 Aligned_cols=145 Identities=16% Similarity=0.202 Sum_probs=85.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCc-----EEEEecCCCCCeEEEEECC-----CCCEEEEEeCCCeeEEEECC--CCC----
Q 048801 255 GRFVITGSDDRLVKIWSMETAF-----CLASCRGHEGDITDLAVSS-----NNTLVASASNDFVIRVWRLP--DGL---- 318 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk-----~l~tL~gHs~~VtsLafSp-----Dg~lLASGS~DGtIrVWDl~--tg~---- 318 (1715)
...|++||..|.++||+..... ++.... -..+|..|+.-. +...||. -.-..+.||.+. .|.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 4589999999999999975432 222222 356788777532 2234444 455678888772 111
Q ss_pred ---ceEEEeCCC--CCeEEEEecCCCCcc--eEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 319 ---PISVLRGHT--GAVTAIAFSPRPSAI--YQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 319 ---~l~~L~gH~--~~VtsLafSPdg~~~--~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
.+..+..|. .....+++-|-+... ..|++-+.||.+.+++-+.-.+ ...++. ..+
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f--~~~lp~--~ll-------------- 176 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF--SRFLPD--FLL-------------- 176 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE--EEEcCC--CCC--------------
Confidence 122223333 233444444433211 3788889999999998654322 111111 000
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCC
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSAC 427 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~ 427 (1715)
.-.++|.+.-..|++++.+..|.-|...
T Consensus 177 --------PgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 177 --------PGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred --------CcCeEEeecCCEEEEecCceeEEEecHH
Confidence 1247788888889999888888888764
No 491
>PRK13684 Ycf48-like protein; Provisional
Probab=78.59 E-value=34 Score=42.04 Aligned_cols=141 Identities=14% Similarity=0.158 Sum_probs=79.6
Q ss_pred CCCeeEEEeCCCCCEEEEEecCCeEEE-EECCCCceEEEE-ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce
Q 048801 545 PRGVNMIVWSLDNRFVLAAIMDCRICV-WNAVDGSLVHSL-TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTP 622 (1715)
Q Consensus 545 ~~~VtslafSPDG~~LaTgs~DGtI~I-WDl~sg~~l~tL-~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~ 622 (1715)
...+..+.+.+++.+++++. .|.+.. ++ ..++.-..+ .+-...++++.+.+ ++.+++. +..|.+.+=....|..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQP-DGNLWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcC-CCCEEEE-ecCCEEEEccCCCCCc
Confidence 34678899999987776554 455443 22 122222222 23456788999998 5666554 4567664323444433
Q ss_pred EEEEEc----ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccccc---------ccceeecCCCccEEEcCCCCe
Q 048801 623 IRIYEI----GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDA---------KYDQFFLGDYRPLIRDSLGNV 689 (1715)
Q Consensus 623 l~tl~~----h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~~---------~~~~~fs~D~r~L~~d~~g~v 689 (1715)
-..... ....+.++.|.+++..++++ .+|.|. .....|+.-+.. .+...|..+.+.++....|.+
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 222111 12357889999988765544 557555 345555443221 234456666676777777776
Q ss_pred ee
Q 048801 690 LD 691 (1715)
Q Consensus 690 ld 691 (1715)
+.
T Consensus 326 l~ 327 (334)
T PRK13684 326 LR 327 (334)
T ss_pred EE
Confidence 64
No 492
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=78.49 E-value=26 Score=46.31 Aligned_cols=127 Identities=13% Similarity=0.146 Sum_probs=72.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe-CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCC
Q 048801 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR-GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQ 363 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~-gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~ 363 (1715)
-..++-+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|....... .+++.|....|.++.-....
T Consensus 29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~q-siLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQ-SILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCC-EEEEEEcCcEEEEEEccchh
Confidence 3345555555555555555555689999998876433222 357889999997543322 67777788889888542211
Q ss_pred CcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCC
Q 048801 364 YSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSAC 427 (1715)
Q Consensus 364 ~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~ 427 (1715)
... ..+. . . ............++|.+..|.++|.+++.++ ..+.|++-.
T Consensus 108 y~~-----~~p~----w--~--~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 108 YTN-----KGPS----W--A--PIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred hhc-----CCcc----c--c--eeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 000 0000 0 0 0000111122346789999999997666543 578888753
No 493
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.94 E-value=38 Score=42.84 Aligned_cols=27 Identities=11% Similarity=-0.053 Sum_probs=22.3
Q ss_pred CCeeEEEeCCCCCEEEEEecCCeEEEE
Q 048801 546 RGVNMIVWSLDNRFVLAAIMDCRICVW 572 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~DGtI~IW 572 (1715)
-.|..+..++.|..++.++.+|.+.++
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEE
Confidence 457888999999999999999866554
No 494
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=77.88 E-value=35 Score=42.92 Aligned_cols=173 Identities=11% Similarity=0.067 Sum_probs=83.6
Q ss_pred EcCCCCEEEEEeC------CCcEEEEeCCCCcEEEEecCC---CCCeEEEEECCCCCEEEEEeC----------------
Q 048801 251 FDRSGRFVITGSD------DRLVKIWSMETAFCLASCRGH---EGDITDLAVSSNNTLVASASN---------------- 305 (1715)
Q Consensus 251 fSpDG~~LaTGS~------DGtIrIWDl~tgk~l~tL~gH---s~~VtsLafSpDg~lLASGS~---------------- 305 (1715)
.-|+|++++++-. -|-+.+.|-++.......... ..--+++-+.|..+.++|..+
T Consensus 137 clp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~ 216 (461)
T PF05694_consen 137 CLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLE 216 (461)
T ss_dssp E-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHH
T ss_pred ecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhh
Confidence 3478988888632 256888888888777776542 223456777888888888643
Q ss_pred ----CCeeEEEECCCCCceEEEeCCC--CCeEEEEecCCCCcceEEEEecCCCcEEEEec-CCCCCcc--eecCCCCCCC
Q 048801 306 ----DFVIRVWRLPDGLPISVLRGHT--GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA-RYSQYSP--RIYLPKPPDA 376 (1715)
Q Consensus 306 ----DGtIrVWDl~tg~~l~~L~gH~--~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl-~tg~~l~--~i~~~~~~~~ 376 (1715)
..++.|||+.+.+.++++.--. ..+..|.|..+.....-++.+...+.|..|-- ..+.... .+.++.. .
T Consensus 217 ~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~--~ 294 (461)
T PF05694_consen 217 AGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK--K 294 (461)
T ss_dssp HH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E--E
T ss_pred cccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc--c
Confidence 2579999999999999987432 34678888876554444555555555655533 3333221 1111110 0
Q ss_pred ccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec-CCCeEEEEeCCCC
Q 048801 377 ITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS-SDTFARVWSACKS 429 (1715)
Q Consensus 377 i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs-~DG~IrVWDl~t~ 429 (1715)
..+.. ..........-..-|+.|.+|.|.++|.+.+ .+|.|+.||+...
T Consensus 295 v~~~~----lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 295 VEGWI----LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp --SS-------GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cCccc----ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 00000 0000000111134489999999999876654 5899999999753
No 495
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=76.99 E-value=0.55 Score=61.26 Aligned_cols=152 Identities=14% Similarity=0.159 Sum_probs=83.2
Q ss_pred CCeeEEEECCCCC-ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecC--CCCCcceecCCCCCCCccCccC
Q 048801 306 DFVIRVWRLPDGL-PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR--YSQYSPRIYLPKPPDAITGKSN 382 (1715)
Q Consensus 306 DGtIrVWDl~tg~-~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~--tg~~l~~i~~~~~~~~i~g~~~ 382 (1715)
.+.|++-+..+.. .-..+++..+.|-.|+|-....- .+. -.-|.+.|||+. .|+....+.+..
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~p--k~~--~~vg~lfVy~vd~l~G~iq~~l~v~~---------- 175 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCP--KGR--RLVGELFVYDVDVLQGEIQPQLEVTP---------- 175 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCCh--HHH--HHhhhhheeehHhhccccccceEEee----------
Confidence 3556666654432 11234567788888888653311 122 334678899875 344333322110
Q ss_pred CCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccc
Q 048801 383 VPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVA 462 (1715)
Q Consensus 383 ~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~a 462 (1715)
..........|.-+-|-++..++..+-.++.|++..+.+.. ...+.+|...+..++|...++
T Consensus 176 -------~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~----------~~l~rsHs~~~~d~a~~~~g~- 237 (1283)
T KOG1916|consen 176 -------ITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL----------RSLFRSHSQRVTDMAFFAEGV- 237 (1283)
T ss_pred -------cCcCCCCcceeeecccccccceeeeccCCCceeEeeechHH----------HHHHHhcCCCcccHHHHhhch-
Confidence 00000011223333344466788888889999988876531 245667888888777765442
Q ss_pred ccccccccccccccccccCCcccCceEEEEcCCCeEEEEec
Q 048801 463 SRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIP 503 (1715)
Q Consensus 463 s~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl 503 (1715)
..+.....++..|++...||.++.|.+
T Consensus 238 --------------~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 238 --------------LKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred --------------hhheeeCCCCcEEEEeecCCccceeee
Confidence 111112233567778888888777754
No 496
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=76.27 E-value=35 Score=44.37 Aligned_cols=73 Identities=12% Similarity=0.235 Sum_probs=49.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCc
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLP 319 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~ 319 (1715)
...++++.-+|.|.-++.++.||.|++|+....+....+. -..+-..+.|...| |+++..|..+.-|. ++|..
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~-~dgvv 86 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWK-EDGVV 86 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheee-ccCcc
Confidence 3456778888999999999999999999987654433322 22334455665444 66666777777786 34433
No 497
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=75.83 E-value=3.4e+02 Score=37.82 Aligned_cols=68 Identities=21% Similarity=0.319 Sum_probs=46.3
Q ss_pred CCCeEEEEEcCCC------CEEEEEeCCCcEEEEeCCCCcEEEEec--CCCCCeEEEEECC---CC------CEEEEEeC
Q 048801 243 RDAVYCAIFDRSG------RFVITGSDDRLVKIWSMETAFCLASCR--GHEGDITDLAVSS---NN------TLVASASN 305 (1715)
Q Consensus 243 ~~~Vt~VafSpDG------~~LaTGS~DGtIrIWDl~tgk~l~tL~--gHs~~VtsLafSp---Dg------~lLASGS~ 305 (1715)
...|.|+++.+++ ++++.|+.|+++++..+....++..+. +-..++.++.+-+ ++ -+|.+|-.
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~ 661 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLR 661 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEeccc
Confidence 4678899998865 689999999999999998666666553 3444555554432 22 25566666
Q ss_pred CCeeE
Q 048801 306 DFVIR 310 (1715)
Q Consensus 306 DGtIr 310 (1715)
.|.+.
T Consensus 662 NGvll 666 (1205)
T KOG1898|consen 662 NGVLL 666 (1205)
T ss_pred ccEEE
Confidence 66544
No 498
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=75.58 E-value=2e+02 Score=40.62 Aligned_cols=18 Identities=17% Similarity=0.054 Sum_probs=13.0
Q ss_pred eEEEeCCCCCEEEEEecC
Q 048801 549 NMIVWSLDNRFVLAAIMD 566 (1715)
Q Consensus 549 tslafSPDG~~LaTgs~D 566 (1715)
.+|+++++|.+.++-+..
T Consensus 596 r~Iavg~~G~lyvaEsD~ 613 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESDG 613 (1899)
T ss_pred hceeecCCceEEEEeccc
Confidence 678888888777765543
No 499
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.42 E-value=59 Score=43.08 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=31.2
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 629 GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 629 h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
....+..+.+||++++||--..+|.|++-+.+..+..
T Consensus 215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 215 PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL 251 (829)
T ss_pred CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhh
Confidence 3567889999999999999999999999988765544
No 500
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=73.71 E-value=62 Score=41.06 Aligned_cols=169 Identities=16% Similarity=0.161 Sum_probs=66.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeC-------CCCcEEEEe-cCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSM-------ETAFCLASC-RGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP 315 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl-------~tgk~l~tL-~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~ 315 (1715)
....+..|...|.-+++. |..+.||+. .++.....+ .++...+.++ ++.....|.|+.|+--
T Consensus 27 ~~~~~gi~~e~g~Aw~~~--d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v--------~lv~p~~G~v~f~~~I 96 (422)
T PF08801_consen 27 SPCSMGIFPEIGRAWIVV--DNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV--------GLVKPKTGRVVFWESI 96 (422)
T ss_dssp TS-EEEEE-TTSEEEEEE--TTEEEEEE--SS--GG--EEEEE-----------SE--------EEEE-TT-EEEEES-T
T ss_pred cceEEEEEcccCEEEEEE--CCEEEEEeccCCCCCcCcccccceecCCCCCCCceE--------EEEEcCCCCEEecccc
Confidence 334555565566544444 679999998 444444444 4444444433 3455567888888532
Q ss_pred CC-CceEEEe------------CCCCCeEEE-EecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCcc
Q 048801 316 DG-LPISVLR------------GHTGAVTAI-AFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKS 381 (1715)
Q Consensus 316 tg-~~l~~L~------------gH~~~VtsL-afSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~ 381 (1715)
.. -.+.+.. .....+..+ ...+.+ ++.+..+|.|.+...+....+..+........ .+..
T Consensus 97 ~~~l~~~t~~~i~l~gv~~~~l~~~e~~~~~~~~~~~~-----~I~~ts~GRif~~~~~~~~g~~~l~y~~~~~~-~~~i 170 (422)
T PF08801_consen 97 SHLLVLATPSQISLLGVSYSELLSGELSTSLTNVEPSG-----FIVSTSTGRIFFLGIRDSNGKYELSYQQLSGR-CSKI 170 (422)
T ss_dssp T-TT--EEEE------------------EEEEEEETTT-----EEEEETT--EEEEEE-TTS-EEEEE-TT---------
T ss_pred hhhhhcCccccccccccceeeecCCceEEECCCCceEE-----EEEECCCCeEEEEeCCCCCCcEEEEEEcCcCC-cccc
Confidence 21 1111111 011112222 223322 45555666666666655333333332111110 0000
Q ss_pred CCCCCC--CCCCC-CCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCC
Q 048801 382 NVPSNN--GPSSS-NGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 382 ~~~~~~--~~~~~-~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t 428 (1715)
...... ..... .......|..++..+..+.|++.+.+|.|.+|++..
T Consensus 171 ~~~~~~~~~~~~p~~~~~~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 171 NHTSSSIFSSLLPSFSDPRPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ---------------------EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ccccCceeccccCCcccchhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 000000 00000 011234499999999889999999999999999964
Done!