Query 048801
Match_columns 1715
No_of_seqs 1295 out of 4962
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 23:38:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 2.5E-42 8.5E-47 447.4 49.9 436 189-685 15-599 (611)
2 2ymu_A WD-40 repeat protein; u 100.0 2.6E-41 9.1E-46 430.6 50.0 451 234-784 7-481 (577)
3 1nr0_A Actin interacting prote 100.0 1.2E-40 4E-45 431.7 49.9 438 241-786 16-597 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 2.2E-39 7.5E-44 412.9 53.8 354 232-686 210-569 (577)
5 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-39 4.8E-44 453.3 49.5 473 190-685 613-1197(1249)
6 1vyh_C Platelet-activating fac 100.0 1.5E-39 5.2E-44 400.6 41.0 308 237-659 102-409 (410)
7 1got_B GT-beta; complex (GTP-b 100.0 6.1E-38 2.1E-42 375.7 42.6 292 233-616 45-340 (340)
8 2ynn_A Coatomer subunit beta'; 100.0 7.2E-38 2.5E-42 369.2 42.4 295 233-661 3-302 (304)
9 1r5m_A SIR4-interacting protei 100.0 5.2E-38 1.8E-42 380.8 41.6 345 235-660 37-424 (425)
10 3ow8_A WD repeat-containing pr 100.0 8.8E-38 3E-42 372.4 41.9 291 234-617 23-319 (321)
11 3sfz_A APAF-1, apoptotic pepti 100.0 2.2E-37 7.5E-42 431.2 48.0 471 236-783 608-1140(1249)
12 3iz6_a 40S ribosomal protein R 100.0 6.1E-38 2.1E-42 381.8 36.0 311 232-621 55-377 (380)
13 1pgu_A Actin interacting prote 100.0 3.3E-37 1.1E-41 394.1 42.9 444 189-686 15-603 (615)
14 3ow8_A WD repeat-containing pr 100.0 4.1E-37 1.4E-41 366.6 40.0 292 275-659 22-319 (321)
15 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.2E-37 1.8E-41 368.7 40.7 323 232-626 4-342 (345)
16 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-36 4.3E-41 403.8 48.0 362 233-686 3-412 (814)
17 2pbi_B Guanine nucleotide-bind 100.0 9E-37 3.1E-41 368.5 41.1 292 234-616 55-354 (354)
18 4g56_B MGC81050 protein; prote 100.0 3.5E-37 1.2E-41 372.7 37.2 323 248-662 10-344 (357)
19 2pm9_A Protein WEB1, protein t 100.0 2.6E-38 8.8E-43 384.7 26.3 338 243-662 12-415 (416)
20 1got_B GT-beta; complex (GTP-b 100.0 2.1E-36 7.3E-41 362.3 42.5 294 275-658 45-340 (340)
21 3iz6_a 40S ribosomal protein R 100.0 6.2E-37 2.1E-41 373.0 36.6 314 266-663 47-377 (380)
22 3frx_A Guanine nucleotide-bind 100.0 4.2E-36 1.4E-40 356.8 41.6 299 232-662 6-318 (319)
23 4ery_A WD repeat-containing pr 100.0 1.6E-35 5.4E-40 348.4 44.7 296 232-660 12-311 (312)
24 1pgu_A Actin interacting prote 100.0 4.1E-36 1.4E-40 384.0 42.9 426 191-661 115-614 (615)
25 2oaj_A Protein SNI1; WD40 repe 100.0 3.5E-36 1.2E-40 406.5 44.1 469 190-688 15-652 (902)
26 2xzm_R RACK1; ribosome, transl 100.0 7.6E-36 2.6E-40 357.7 40.6 296 232-620 10-341 (343)
27 1gxr_A ESG1, transducin-like e 100.0 5.4E-36 1.9E-40 351.9 37.8 323 242-659 8-335 (337)
28 2pbi_B Guanine nucleotide-bind 100.0 1.6E-35 5.4E-40 357.6 42.1 298 276-658 55-354 (354)
29 1erj_A Transcriptional repress 100.0 1.1E-35 3.8E-40 363.6 40.2 305 240-619 61-389 (393)
30 4gqb_B Methylosome protein 50; 100.0 4.8E-36 1.6E-40 361.7 35.8 305 267-663 16-333 (344)
31 2hes_X YDR267CP; beta-propelle 100.0 2.5E-35 8.6E-40 351.8 39.2 308 232-619 3-328 (330)
32 4gqb_B Methylosome protein 50; 100.0 1.2E-35 3.9E-40 358.4 36.4 287 241-621 28-333 (344)
33 4g56_B MGC81050 protein; prote 100.0 7E-36 2.4E-40 361.3 34.2 291 239-620 38-344 (357)
34 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9.7E-35 3.3E-39 359.7 45.2 322 233-661 108-442 (445)
35 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.6E-35 5.6E-40 355.7 37.1 305 275-665 5-339 (345)
36 4aow_A Guanine nucleotide-bind 100.0 2.6E-34 8.9E-39 339.1 43.1 299 229-621 24-339 (340)
37 4aow_A Guanine nucleotide-bind 100.0 1.7E-34 5.6E-39 340.8 40.7 300 272-663 25-339 (340)
38 2oaj_A Protein SNI1; WD40 repe 100.0 9.1E-35 3.1E-39 392.8 43.3 438 191-665 57-668 (902)
39 3zwl_B Eukaryotic translation 100.0 7.4E-34 2.5E-38 337.6 43.5 308 233-623 22-350 (369)
40 3vl1_A 26S proteasome regulato 100.0 7E-35 2.4E-39 355.8 33.8 346 245-661 58-419 (420)
41 2xzm_R RACK1; ribosome, transl 100.0 1.9E-34 6.7E-39 345.4 36.2 304 276-663 12-342 (343)
42 2hes_X YDR267CP; beta-propelle 100.0 3.4E-34 1.2E-38 342.0 37.2 306 273-661 2-328 (330)
43 3v7d_B Cell division control p 100.0 1.3E-33 4.4E-38 350.6 42.8 345 234-658 112-460 (464)
44 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-33 4.2E-38 375.0 44.2 391 190-689 11-453 (814)
45 1erj_A Transcriptional repress 100.0 2.2E-33 7.7E-38 343.2 41.7 291 283-661 62-389 (393)
46 1sq9_A Antiviral protein SKI8; 100.0 9.1E-34 3.1E-38 342.8 37.4 314 233-621 6-397 (397)
47 3zwl_B Eukaryotic translation 100.0 4.7E-33 1.6E-37 330.7 42.1 304 276-664 23-349 (369)
48 1vyh_C Platelet-activating fac 100.0 1.9E-33 6.4E-38 346.3 36.9 285 189-574 105-409 (410)
49 1r5m_A SIR4-interacting protei 100.0 2.9E-33 9.9E-38 339.2 37.2 304 264-663 24-363 (425)
50 3dm0_A Maltose-binding peripla 100.0 4.4E-33 1.5E-37 365.6 41.6 294 233-618 372-692 (694)
51 1gxr_A ESG1, transducin-like e 100.0 3.3E-32 1.1E-36 319.7 42.8 320 192-617 9-335 (337)
52 1k8k_C P40, ARP2/3 complex 41 100.0 1.8E-33 6.3E-38 336.1 32.7 303 239-621 4-363 (372)
53 4a11_B DNA excision repair pro 100.0 1.4E-32 4.8E-37 331.8 40.6 351 230-660 30-404 (408)
54 3odt_A Protein DOA1; ubiquitin 100.0 1.4E-32 4.8E-37 319.9 38.9 294 231-627 6-304 (313)
55 3i2n_A WD repeat-containing pr 100.0 8.1E-33 2.8E-37 328.1 36.2 303 236-622 11-356 (357)
56 1sq9_A Antiviral protein SKI8; 100.0 1E-32 3.5E-37 333.6 37.7 296 277-663 8-397 (397)
57 3odt_A Protein DOA1; ubiquitin 100.0 3.1E-32 1E-36 317.0 39.9 293 275-666 8-301 (313)
58 2ynn_A Coatomer subunit beta'; 100.0 2.7E-32 9.4E-37 321.5 39.4 279 276-686 4-292 (304)
59 3ei3_B DNA damage-binding prot 100.0 6.6E-33 2.3E-37 335.3 34.5 302 269-661 57-382 (383)
60 3k26_A Polycomb protein EED; W 100.0 8.5E-33 2.9E-37 328.6 34.8 312 238-618 13-365 (366)
61 3ei3_B DNA damage-binding prot 100.0 2.3E-32 8E-37 330.5 37.7 311 231-619 61-382 (383)
62 2j04_B YDR362CP, TAU91; beta p 100.0 7.6E-34 2.6E-38 361.4 24.8 312 252-660 170-516 (524)
63 2pm9_A Protein WEB1, protein t 100.0 2.7E-33 9.2E-38 340.4 28.4 306 286-664 13-340 (416)
64 3gre_A Serine/threonine-protei 100.0 9.3E-33 3.2E-37 340.1 33.4 303 231-658 50-437 (437)
65 3dwl_C Actin-related protein 2 100.0 1.9E-33 6.4E-38 338.6 26.2 300 238-617 6-377 (377)
66 4e54_B DNA damage-binding prot 100.0 3.6E-33 1.2E-37 345.7 29.3 302 276-665 110-434 (435)
67 3dm0_A Maltose-binding peripla 100.0 4.2E-32 1.4E-36 356.4 40.0 295 276-660 373-692 (694)
68 1k8k_C P40, ARP2/3 complex 41 100.0 2.3E-32 7.9E-37 326.6 33.2 314 281-664 4-364 (372)
69 3i2n_A WD repeat-containing pr 100.0 3.9E-32 1.3E-36 322.3 32.8 294 278-663 11-355 (357)
70 4gga_A P55CDC, cell division c 100.0 1.7E-31 5.9E-36 328.9 39.5 301 246-638 108-414 (420)
71 4a11_B DNA excision repair pro 100.0 4E-32 1.4E-36 327.8 32.0 328 264-666 22-370 (408)
72 4e54_B DNA damage-binding prot 100.0 3.4E-32 1.2E-36 337.0 31.6 316 233-623 109-434 (435)
73 3k26_A Polycomb protein EED; W 100.0 7E-32 2.4E-36 320.7 32.7 317 280-660 13-365 (366)
74 3f3f_A Nucleoporin SEH1; struc 100.0 1.6E-31 5.5E-36 313.0 34.4 317 237-627 5-345 (351)
75 3vl1_A 26S proteasome regulato 100.0 6.2E-32 2.1E-36 329.8 31.8 347 195-619 59-419 (420)
76 4ggc_A P55CDC, cell division c 100.0 1.2E-30 3.9E-35 304.9 39.5 284 246-621 28-317 (318)
77 4aez_A CDC20, WD repeat-contai 100.0 3.6E-31 1.2E-35 323.7 36.0 298 236-627 84-388 (401)
78 4ery_A WD repeat-containing pr 100.0 2.9E-30 9.8E-35 303.6 40.6 289 190-618 21-311 (312)
79 3v7d_B Cell division control p 100.0 2.6E-30 8.8E-35 320.8 41.2 297 277-666 113-426 (464)
80 1yfq_A Cell cycle arrest prote 100.0 1.3E-30 4.6E-35 308.1 36.2 297 235-616 3-321 (342)
81 3frx_A Guanine nucleotide-bind 100.0 1.9E-30 6.3E-35 308.2 37.3 296 189-577 14-318 (319)
82 1p22_A F-BOX/WD-repeat protein 100.0 7E-31 2.4E-35 324.7 34.5 298 237-639 127-433 (435)
83 3dwl_C Actin-related protein 2 100.0 5.7E-32 2E-36 325.6 24.1 307 281-659 7-377 (377)
84 2pm7_B Protein transport prote 100.0 1.2E-30 4.2E-35 306.3 34.8 262 236-575 2-284 (297)
85 2pm7_B Protein transport prote 100.0 4.3E-30 1.5E-34 301.7 35.2 266 278-660 2-284 (297)
86 3mmy_A MRNA export factor; mRN 100.0 2.4E-30 8.3E-35 307.2 33.2 312 231-618 27-345 (368)
87 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.5E-29 5.1E-34 313.2 41.4 300 218-619 134-442 (445)
88 4h5i_A Guanine nucleotide-exch 100.0 1.6E-30 5.3E-35 315.6 30.5 288 243-619 14-343 (365)
89 4gga_A P55CDC, cell division c 100.0 1.7E-29 5.9E-34 311.0 39.6 287 287-665 107-399 (420)
90 3dw8_B Serine/threonine-protei 100.0 4.6E-30 1.6E-34 315.4 33.8 324 284-659 27-444 (447)
91 4ggc_A P55CDC, cell division c 100.0 2.6E-29 8.8E-34 293.5 38.2 283 288-662 28-316 (318)
92 3bg1_A Protein SEC13 homolog; 100.0 1.5E-30 5.3E-35 308.5 28.2 260 238-575 8-292 (316)
93 4h5i_A Guanine nucleotide-exch 100.0 3.6E-30 1.2E-34 312.4 31.9 292 285-662 14-344 (365)
94 4aez_A CDC20, WD repeat-contai 100.0 9.7E-30 3.3E-34 311.1 35.9 290 280-666 86-385 (401)
95 3dw8_B Serine/threonine-protei 100.0 6.6E-30 2.3E-34 314.1 33.7 291 241-617 26-444 (447)
96 3mmy_A MRNA export factor; mRN 100.0 5.2E-30 1.8E-34 304.3 31.0 296 269-659 23-344 (368)
97 3jrp_A Fusion protein of prote 100.0 9.4E-30 3.2E-34 303.9 31.9 266 234-580 2-291 (379)
98 2j04_B YDR362CP, TAU91; beta p 100.0 2.3E-30 8E-35 329.3 27.3 293 236-618 200-516 (524)
99 1yfq_A Cell cycle arrest prote 100.0 3.1E-29 1.1E-33 296.3 34.8 293 278-658 4-321 (342)
100 3f3f_A Nucleoporin SEH1; struc 100.0 1.5E-29 5.2E-34 296.2 31.0 317 279-665 5-341 (351)
101 1p22_A F-BOX/WD-repeat protein 100.0 3.3E-29 1.1E-33 309.7 33.8 281 281-665 129-418 (435)
102 1l0q_A Surface layer protein; 100.0 6.3E-28 2.2E-32 291.8 41.5 331 256-682 3-363 (391)
103 3bg1_A Protein SEC13 homolog; 100.0 1.6E-29 5.4E-34 299.8 26.7 271 280-618 8-292 (316)
104 3jrp_A Fusion protein of prote 100.0 5.2E-29 1.8E-33 297.4 27.8 277 275-623 1-291 (379)
105 1t77_A Lipopolysaccharide-resp 100.0 7.6E-32 2.6E-36 320.7 2.8 131 15-151 258-414 (414)
106 2j04_A TAU60, YPL007P, hypothe 100.0 8E-30 2.7E-34 319.5 19.4 324 241-684 13-348 (588)
107 2aq5_A Coronin-1A; WD40 repeat 100.0 2E-28 7E-33 298.9 29.7 287 245-621 36-344 (402)
108 3gre_A Serine/threonine-protei 100.0 3.1E-28 1.1E-32 299.7 27.4 308 189-616 60-437 (437)
109 3jro_A Fusion protein of prote 100.0 1.3E-28 4.4E-33 326.9 24.6 262 236-578 2-287 (753)
110 2j04_A TAU60, YPL007P, hypothe 100.0 4.2E-28 1.4E-32 304.0 25.8 322 283-746 13-349 (588)
111 2aq5_A Coronin-1A; WD40 repeat 100.0 6.9E-28 2.4E-32 294.2 26.8 290 287-663 36-344 (402)
112 2vdu_B TRNA (guanine-N(7)-)-me 100.0 9.7E-27 3.3E-31 289.1 36.8 308 244-618 5-390 (450)
113 3vu4_A KMHSV2; beta-propeller 100.0 3.1E-27 1E-31 285.2 31.1 306 269-663 3-338 (355)
114 3bws_A Protein LP49; two-domai 100.0 2.4E-26 8.3E-31 281.8 38.2 320 243-660 60-431 (433)
115 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.7E-26 5.9E-31 286.9 36.1 284 286-660 5-390 (450)
116 3vu4_A KMHSV2; beta-propeller 100.0 1.2E-26 4.1E-31 280.0 33.3 292 232-619 8-336 (355)
117 2xyi_A Probable histone-bindin 100.0 9.3E-27 3.2E-31 288.0 32.2 263 279-620 122-411 (430)
118 2xyi_A Probable histone-bindin 100.0 2.7E-26 9.2E-31 283.9 33.7 272 321-662 122-411 (430)
119 3bws_A Protein LP49; two-domai 99.9 5.9E-26 2E-30 278.4 34.3 291 233-619 113-432 (433)
120 3lrv_A PRE-mRNA-splicing facto 99.9 1.1E-26 3.9E-31 277.8 23.4 275 251-659 44-331 (343)
121 4gq1_A NUP37; propeller, trans 99.9 1.6E-26 5.3E-31 282.9 22.3 264 286-659 90-387 (393)
122 4gq1_A NUP37; propeller, trans 99.9 1.6E-26 5.4E-31 282.9 22.2 288 239-617 85-387 (393)
123 3jro_A Fusion protein of prote 99.9 2E-26 6.9E-31 305.8 24.7 272 278-621 2-287 (753)
124 1l0q_A Surface layer protein; 99.9 2.2E-24 7.6E-29 260.7 39.6 319 227-648 16-365 (391)
125 1nir_A Nitrite reductase; hemo 99.9 9E-25 3.1E-29 279.4 35.2 348 251-679 145-532 (543)
126 2w18_A PALB2, fancn, partner a 99.9 1.5E-24 5.1E-29 257.5 32.7 294 232-659 24-355 (356)
127 1k32_A Tricorn protease; prote 99.9 5.8E-24 2E-28 292.0 38.4 350 235-686 44-491 (1045)
128 2ecf_A Dipeptidyl peptidase IV 99.9 7.3E-24 2.5E-28 279.2 31.5 345 243-662 36-460 (741)
129 3lrv_A PRE-mRNA-splicing facto 99.9 2.1E-24 7.1E-29 258.2 23.5 242 292-663 43-294 (343)
130 1k32_A Tricorn protease; prote 99.9 1E-22 3.4E-27 279.8 38.3 378 190-662 50-503 (1045)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.5E-23 8.6E-28 256.9 28.4 300 244-643 63-410 (415)
132 1nir_A Nitrite reductase; hemo 99.9 7.4E-22 2.5E-26 252.4 40.4 317 228-629 164-524 (543)
133 1xfd_A DIP, dipeptidyl aminope 99.9 2.8E-22 9.7E-27 263.0 25.6 361 245-685 18-428 (723)
134 2z3z_A Dipeptidyl aminopeptida 99.9 6.9E-22 2.4E-26 259.1 28.2 337 246-663 28-437 (706)
135 2w18_A PALB2, fancn, partner a 99.9 9.2E-22 3.1E-26 233.7 25.8 269 232-617 75-355 (356)
136 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.1E-21 1.7E-25 236.3 27.7 269 231-598 103-408 (415)
137 2ecf_A Dipeptidyl peptidase IV 99.9 1.4E-20 4.8E-25 247.9 32.2 304 285-684 36-442 (741)
138 3u4y_A Uncharacterized protein 99.9 9E-20 3.1E-24 215.1 33.8 285 250-621 4-306 (331)
139 1ri6_A Putative isomerase YBHE 99.8 2.6E-19 9E-24 210.6 31.6 304 257-642 7-334 (343)
140 3vgz_A Uncharacterized protein 99.8 9.2E-19 3.2E-23 207.5 36.5 286 285-652 40-335 (353)
141 3u4y_A Uncharacterized protein 99.8 5.6E-19 1.9E-23 208.3 33.4 284 291-663 3-306 (331)
142 2ojh_A Uncharacterized protein 99.8 1.3E-19 4.5E-24 207.2 25.6 255 260-609 17-292 (297)
143 1pby_B Quinohemoprotein amine 99.8 4.4E-19 1.5E-23 208.2 29.6 287 256-631 2-322 (337)
144 2z3z_A Dipeptidyl aminopeptida 99.8 6.5E-19 2.2E-23 230.8 33.1 290 244-627 82-442 (706)
145 2ojh_A Uncharacterized protein 99.8 1.8E-19 6.3E-24 206.0 24.5 255 302-651 17-292 (297)
146 1z68_A Fibroblast activation p 99.8 6.8E-20 2.3E-24 240.8 23.9 340 248-665 20-447 (719)
147 1pby_B Quinohemoprotein amine 99.8 8.3E-19 2.8E-23 205.8 29.4 275 298-666 2-315 (337)
148 1ri6_A Putative isomerase YBHE 99.8 1.3E-18 4.6E-23 204.6 29.4 279 299-663 7-312 (343)
149 3vgz_A Uncharacterized protein 99.8 4.5E-18 1.5E-22 201.6 33.7 270 243-607 40-333 (353)
150 1xfd_A DIP, dipeptidyl aminope 99.8 2.3E-18 7.8E-23 226.0 31.6 314 228-627 42-451 (723)
151 3o4h_A Acylamino-acid-releasin 99.8 6.7E-19 2.3E-23 225.9 22.4 270 243-619 21-315 (582)
152 1jmx_B Amine dehydrogenase; ox 99.8 1.8E-17 6.2E-22 195.7 31.0 286 248-629 4-335 (349)
153 3hfq_A Uncharacterized protein 99.8 3.8E-17 1.3E-21 194.6 31.5 291 264-624 15-324 (347)
154 3o4h_A Acylamino-acid-releasin 99.8 3.1E-18 1.1E-22 219.7 23.7 269 285-661 21-315 (582)
155 1z68_A Fibroblast activation p 99.8 2.2E-18 7.4E-23 226.6 19.7 315 290-684 20-427 (719)
156 1jmx_B Amine dehydrogenase; ox 99.8 3.4E-17 1.2E-21 193.4 27.8 308 290-667 4-331 (349)
157 4a5s_A Dipeptidyl peptidase 4 99.8 4E-17 1.4E-21 216.1 29.0 338 244-664 17-452 (740)
158 3pe7_A Oligogalacturonate lyas 99.8 4.8E-17 1.7E-21 196.1 26.1 298 267-659 12-380 (388)
159 3hfq_A Uncharacterized protein 99.8 1.8E-16 6.3E-21 188.7 30.2 276 306-665 15-323 (347)
160 3scy_A Hypothetical bacterial 99.8 9E-16 3.1E-20 184.0 36.1 318 255-639 13-360 (361)
161 3pe7_A Oligogalacturonate lyas 99.7 4.2E-17 1.5E-21 196.6 23.5 297 231-617 18-380 (388)
162 3c5m_A Oligogalacturonate lyas 99.7 5.8E-17 2E-21 195.2 23.8 310 232-663 19-386 (396)
163 2oiz_A Aromatic amine dehydrog 99.7 1.1E-15 3.6E-20 185.4 30.0 307 254-643 14-360 (361)
164 3scy_A Hypothetical bacterial 99.7 2.1E-15 7E-20 180.9 31.2 297 295-665 11-343 (361)
165 3azo_A Aminopeptidase; POP fam 99.7 1.7E-15 5.8E-20 196.9 25.3 305 238-627 18-377 (662)
166 2oit_A Nucleoporin 214KDA; NH2 99.7 2.8E-15 9.5E-20 186.3 25.4 167 241-429 90-279 (434)
167 4a5s_A Dipeptidyl peptidase 4 99.7 1.8E-15 6.2E-20 200.3 24.0 313 286-685 17-434 (740)
168 2oit_A Nucleoporin 214KDA; NH2 99.7 1.9E-15 6.6E-20 187.8 21.3 217 399-662 38-279 (434)
169 2oiz_A Aromatic amine dehydrog 99.6 2.7E-14 9.1E-19 173.0 29.5 297 296-679 14-360 (361)
170 1jof_A Carboxy-CIS,CIS-muconat 99.6 4.3E-14 1.5E-18 170.6 30.2 289 257-620 4-342 (365)
171 1jof_A Carboxy-CIS,CIS-muconat 99.6 3.3E-14 1.1E-18 171.6 26.8 278 299-662 4-342 (365)
172 3c5m_A Oligogalacturonate lyas 99.6 4.6E-15 1.6E-19 178.6 17.9 298 268-685 13-369 (396)
173 1qks_A Cytochrome CD1 nitrite 99.6 8.9E-13 3E-17 169.0 39.2 338 253-669 165-546 (567)
174 3azo_A Aminopeptidase; POP fam 99.6 3.4E-14 1.1E-18 184.7 25.8 302 280-665 18-373 (662)
175 3fvz_A Peptidyl-glycine alpha- 99.6 4.1E-13 1.4E-17 159.9 31.2 256 243-618 23-321 (329)
176 2gop_A Trilobed protease; beta 99.6 3.6E-13 1.2E-17 159.9 26.9 260 244-621 15-332 (347)
177 2dg1_A DRP35, lactonase; beta 99.6 6.2E-13 2.1E-17 157.2 28.8 278 244-608 6-300 (333)
178 2dg1_A DRP35, lactonase; beta 99.5 7.2E-13 2.5E-17 156.7 28.0 270 286-652 6-301 (333)
179 1q7f_A NHL, brain tumor CG1071 99.5 2.5E-12 8.7E-17 148.7 32.0 243 283-621 27-282 (286)
180 1q7f_A NHL, brain tumor CG1071 99.5 2.2E-12 7.5E-17 149.3 31.0 243 241-577 27-281 (286)
181 3fvz_A Peptidyl-glycine alpha- 99.5 4.5E-12 1.5E-16 150.9 32.0 251 327-660 23-321 (329)
182 1qks_A Cytochrome CD1 nitrite 99.5 6.8E-12 2.3E-16 160.8 35.0 300 295-684 165-520 (567)
183 2z2n_A Virginiamycin B lyase; 99.5 1E-10 3.5E-15 134.8 39.7 283 239-620 10-296 (299)
184 2xdw_A Prolyl endopeptidase; a 99.5 6.2E-12 2.1E-16 165.6 32.9 294 253-627 81-423 (710)
185 2gop_A Trilobed protease; beta 99.5 2.5E-12 8.7E-17 152.5 25.9 258 286-660 15-330 (347)
186 2xdw_A Prolyl endopeptidase; a 99.5 9.1E-12 3.1E-16 164.0 32.5 248 326-663 123-416 (710)
187 3e5z_A Putative gluconolactona 99.5 1.5E-11 5.2E-16 143.3 30.6 268 275-665 17-290 (296)
188 2z2n_A Virginiamycin B lyase; 99.5 1.5E-10 5.2E-15 133.3 38.1 283 281-662 10-296 (299)
189 3dsm_A Uncharacterized protein 99.4 1.7E-11 5.7E-16 146.2 28.4 282 263-638 15-319 (328)
190 2bkl_A Prolyl endopeptidase; m 99.4 3.3E-12 1.1E-16 167.8 23.9 280 252-622 76-400 (695)
191 2bkl_A Prolyl endopeptidase; m 99.4 7.1E-12 2.4E-16 164.7 26.1 277 295-664 77-400 (695)
192 3e5z_A Putative gluconolactona 99.4 4.1E-11 1.4E-15 139.6 29.7 248 234-579 18-289 (296)
193 2mad_H Methylamine dehydrogena 99.4 5.1E-10 1.7E-14 136.3 35.8 292 251-626 28-357 (373)
194 3sjl_D Methylamine dehydrogena 99.4 9.2E-11 3.2E-15 142.5 28.7 308 250-641 39-384 (386)
195 1rwi_B Serine/threonine-protei 99.4 9.6E-11 3.3E-15 133.7 27.2 240 245-578 25-266 (270)
196 1rwi_B Serine/threonine-protei 99.3 2.4E-10 8.1E-15 130.4 27.8 241 329-664 25-267 (270)
197 2mad_H Methylamine dehydrogena 99.3 1.1E-09 3.6E-14 133.5 35.0 289 292-667 27-356 (373)
198 3d7c_A General control of amin 99.3 1.1E-12 3.7E-17 132.2 6.6 99 1613-1715 9-107 (112)
199 2qc5_A Streptogramin B lactona 99.3 3.2E-09 1.1E-13 122.3 36.8 280 240-617 16-298 (300)
200 3no2_A Uncharacterized protein 99.3 2.7E-10 9.3E-15 132.8 26.5 247 254-586 4-262 (276)
201 2qc5_A Streptogramin B lactona 99.3 3.9E-09 1.3E-13 121.5 35.9 278 283-659 17-298 (300)
202 3dsm_A Uncharacterized protein 99.3 5.8E-10 2E-14 132.9 29.1 253 245-595 45-319 (328)
203 3sjl_D Methylamine dehydrogena 99.3 1E-09 3.4E-14 133.4 30.8 290 291-668 38-370 (386)
204 3nxb_A CAT eye syndrome critic 99.3 1.5E-12 5E-17 132.1 4.9 98 1613-1714 18-115 (116)
205 2dat_A Possible global transcr 99.3 5.3E-12 1.8E-16 129.3 8.5 107 1609-1715 11-119 (123)
206 3tlp_A Protein polybromo-1; PB 99.3 2.9E-12 1E-16 135.8 6.3 103 1612-1714 28-130 (150)
207 4alg_A Bromodomain-containing 99.3 2.2E-12 7.5E-17 136.9 5.1 86 1630-1715 47-134 (154)
208 1yr2_A Prolyl oligopeptidase; 99.3 3.5E-10 1.2E-14 149.7 27.4 282 252-621 115-443 (741)
209 3k2j_A Protein polybromo-1; PB 99.3 2.9E-12 1E-16 132.2 5.8 86 1630-1715 38-123 (130)
210 3ljw_A Protein polybromo-1; al 99.3 2.1E-12 7.3E-17 131.6 4.7 86 1630-1715 29-114 (120)
211 2grc_A Probable global transcr 99.3 3.4E-12 1.2E-16 131.7 5.9 105 1611-1715 11-118 (129)
212 1yr2_A Prolyl oligopeptidase; 99.2 3.4E-10 1.2E-14 149.9 26.3 279 295-664 116-444 (741)
213 3iu5_A Protein polybromo-1; PB 99.2 4.9E-12 1.7E-16 128.2 6.3 103 1612-1715 9-111 (116)
214 3no2_A Uncharacterized protein 99.2 8.2E-10 2.8E-14 128.8 25.9 236 295-628 3-261 (276)
215 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 1.8E-09 6.3E-14 125.7 29.0 253 282-619 14-299 (314)
216 3fkm_X Signaling protein; brom 99.2 1E-11 3.5E-16 133.5 8.1 104 1608-1715 18-123 (166)
217 2oss_A HUNK1 protein, bromodom 99.2 8.3E-12 2.8E-16 128.4 6.8 86 1630-1715 36-123 (127)
218 3jvl_A Bromodomain-containing 99.2 1.1E-11 3.9E-16 126.3 7.4 104 1611-1715 9-114 (120)
219 3g0l_A Hwalp4, bromodomain adj 99.2 6.7E-12 2.3E-16 127.5 5.5 86 1630-1715 28-113 (117)
220 3mb4_A Protein polybromo-1; PB 99.2 1.3E-11 4.3E-16 126.7 7.5 104 1612-1715 16-121 (124)
221 3c75_H MADH, methylamine dehyd 99.2 1E-09 3.6E-14 135.3 26.0 304 253-641 82-423 (426)
222 2i7k_A Bromodomain-containing 99.2 1E-11 3.5E-16 125.8 6.1 84 1631-1714 24-107 (117)
223 3p1f_A CREB-binding protein; s 99.2 1.4E-11 4.9E-16 125.4 7.1 101 1611-1714 11-113 (119)
224 2yyn_A Transcription intermedi 99.2 1.4E-11 4.9E-16 128.0 7.1 103 1607-1714 16-120 (135)
225 3q7m_A Lipoprotein YFGL, BAMB; 99.2 1.6E-08 5.4E-13 122.0 34.3 308 255-658 53-375 (376)
226 1e6i_A Transcriptional activat 99.2 1.3E-11 4.5E-16 125.9 6.0 85 1631-1715 29-113 (121)
227 2ri7_A Nucleosome-remodeling f 99.2 1.8E-11 6E-16 133.2 7.2 105 1607-1715 68-172 (174)
228 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 5.1E-09 1.7E-13 121.9 28.5 247 239-576 13-299 (314)
229 3q2e_A Bromodomain and WD repe 99.2 1.3E-11 4.3E-16 126.5 5.5 100 1611-1714 10-110 (123)
230 2ouo_A HUNK1 protein, bromodom 99.2 2.2E-11 7.6E-16 125.7 7.1 102 1613-1715 24-127 (130)
231 2d9e_A Peregrin; four-helix bu 99.2 9.9E-12 3.4E-16 126.8 4.0 84 1631-1714 23-106 (121)
232 3mqm_A Probable histone-lysine 99.2 2E-11 6.7E-16 125.6 5.8 85 1630-1714 30-114 (126)
233 3c75_H MADH, methylamine dehyd 99.1 4.8E-09 1.6E-13 129.4 27.5 287 295-667 82-408 (426)
234 3rcw_A Bromodomain-containing 99.1 1.9E-11 6.6E-16 127.2 5.1 85 1630-1714 28-112 (135)
235 3mb3_A PH-interacting protein; 99.1 2.6E-11 8.9E-16 126.2 5.4 99 1612-1714 22-121 (135)
236 3uv4_A Second bromodomain of h 99.1 5.2E-11 1.8E-15 126.8 7.2 103 1613-1715 27-130 (158)
237 3hme_A Bromodomain-containing 99.1 3.3E-11 1.1E-15 123.3 5.4 84 1631-1714 29-112 (123)
238 3hrp_A Uncharacterized protein 99.1 1.8E-08 6.1E-13 124.1 30.1 255 244-574 131-408 (409)
239 2qe8_A Uncharacterized protein 99.1 2.1E-09 7.3E-14 128.7 21.2 270 286-657 17-317 (343)
240 1kb0_A Quinohemoprotein alcoho 99.1 4.7E-09 1.6E-13 137.5 25.5 352 255-648 77-537 (677)
241 1yiq_A Quinohemoprotein alcoho 99.1 1.5E-08 5E-13 133.2 29.0 352 255-647 70-534 (689)
242 3g4e_A Regucalcin; six bladed 99.0 5.6E-08 1.9E-12 113.7 29.4 242 282-609 9-263 (297)
243 1mda_H Methylamine dehydrogena 99.0 4.8E-09 1.6E-13 127.3 20.5 282 266-639 47-365 (368)
244 3hrp_A Uncharacterized protein 99.0 8.9E-08 3E-12 117.9 32.0 256 286-617 131-408 (409)
245 3g4e_A Regucalcin; six bladed 99.0 6.5E-08 2.2E-12 113.2 29.3 231 326-650 11-261 (297)
246 2qe8_A Uncharacterized protein 99.0 1.3E-08 4.4E-13 121.9 23.2 285 233-616 9-318 (343)
247 3o36_A Transcription intermedi 99.0 2.4E-10 8.1E-15 125.4 7.2 104 1607-1715 77-182 (184)
248 3hxj_A Pyrrolo-quinoline quino 99.0 2.7E-09 9.1E-14 125.3 15.4 301 248-661 24-324 (330)
249 1xip_A Nucleoporin NUP159; bet 99.0 5.2E-09 1.8E-13 127.6 18.2 168 245-460 39-225 (388)
250 3dai_A ATPase family AAA domai 99.0 4E-10 1.4E-14 116.4 7.2 100 1614-1713 9-112 (130)
251 2ro1_A Transcription intermedi 98.9 5.9E-10 2E-14 122.4 6.8 99 1607-1714 72-175 (189)
252 3dr2_A Exported gluconolactona 98.9 1E-07 3.4E-12 111.9 26.3 234 235-568 36-299 (305)
253 3iuj_A Prolyl endopeptidase; h 98.9 2.8E-08 9.7E-13 130.6 23.9 246 326-664 127-408 (693)
254 3iuj_A Prolyl endopeptidase; h 98.9 3.1E-08 1E-12 130.2 23.9 250 283-622 126-408 (693)
255 3uv5_A Transcription initiatio 98.9 6.2E-10 2.1E-14 128.9 6.6 87 1628-1714 27-113 (265)
256 1mda_H Methylamine dehydrogena 98.9 2.9E-08 1E-12 120.4 20.8 267 308-669 47-354 (368)
257 4a2l_A BT_4663, two-component 98.9 4.1E-06 1.4E-10 111.7 42.7 333 246-664 175-529 (795)
258 2dkw_A Hypothetical protein KI 98.9 1.7E-09 6E-14 111.5 7.8 78 1631-1713 28-109 (131)
259 2ghs_A AGR_C_1268P; regucalcin 98.9 3.9E-07 1.3E-11 108.3 28.8 233 288-610 51-294 (326)
260 2ghs_A AGR_C_1268P; regucalcin 98.9 5.5E-07 1.9E-11 107.0 30.1 224 329-650 50-291 (326)
261 1kb0_A Quinohemoprotein alcoho 98.9 1E-07 3.5E-12 124.9 25.4 297 297-667 77-513 (677)
262 3uv5_A Transcription initiatio 98.9 2.2E-09 7.4E-14 124.3 8.1 88 1628-1715 150-237 (265)
263 2r0y_A Chromatin structure-rem 98.9 1.7E-09 6E-14 127.4 7.3 85 1630-1714 178-262 (311)
264 4a2l_A BT_4663, two-component 98.8 1.1E-05 3.8E-10 107.5 44.2 328 243-664 214-574 (795)
265 3dr2_A Exported gluconolactona 98.8 3.1E-07 1.1E-11 107.7 25.8 238 278-610 37-298 (305)
266 3q7m_A Lipoprotein YFGL, BAMB; 98.8 1.5E-06 5.1E-11 104.6 31.8 279 297-666 53-342 (376)
267 2r10_A Chromatin structure-rem 98.8 3E-09 1E-13 128.2 7.4 85 1630-1714 228-312 (361)
268 1xip_A Nucleoporin NUP159; bet 98.8 4.7E-08 1.6E-12 119.1 17.6 180 399-648 39-231 (388)
269 2hz6_A Endoplasmic reticulum t 98.8 6.1E-11 2.1E-15 144.1 -7.8 141 254-429 8-150 (369)
270 3u5n_A E3 ubiquitin-protein li 98.8 3.1E-09 1.1E-13 118.6 6.1 105 1606-1715 76-200 (207)
271 3aad_A Transcription initiatio 98.8 1.9E-09 6.6E-14 126.3 4.0 86 1629-1714 61-146 (292)
272 3hxj_A Pyrrolo-quinoline quino 98.8 8.6E-08 3E-12 112.3 17.8 264 290-665 24-287 (330)
273 1yiq_A Quinohemoprotein alcoho 98.8 2.8E-07 9.5E-12 121.1 24.3 158 255-431 121-341 (689)
274 1kv9_A Type II quinohemoprotei 98.7 2.1E-06 7.2E-11 112.4 30.9 354 255-649 66-520 (668)
275 2r0y_A Chromatin structure-rem 98.7 6.7E-09 2.3E-13 122.4 6.3 83 1631-1714 46-128 (311)
276 3aad_A Transcription initiatio 98.7 9.3E-09 3.2E-13 120.5 7.2 86 1629-1714 184-269 (292)
277 3v9f_A Two-component system se 98.7 4.9E-05 1.7E-09 101.1 41.6 331 244-664 211-571 (781)
278 3v9f_A Two-component system se 98.6 9.4E-05 3.2E-09 98.3 43.2 344 244-664 163-527 (781)
279 2r10_A Chromatin structure-rem 98.6 1.7E-08 5.9E-13 121.6 5.8 82 1631-1713 96-177 (361)
280 1fwx_A Nitrous oxide reductase 98.6 5.3E-07 1.8E-11 114.0 18.5 295 258-650 18-407 (595)
281 1kv9_A Type II quinohemoprotei 98.5 3.2E-06 1.1E-10 110.6 24.4 297 297-667 66-494 (668)
282 2hz6_A Endoplasmic reticulum t 98.5 4.2E-08 1.4E-12 119.1 3.5 186 408-665 8-196 (369)
283 1w6s_A Methanol dehydrogenase 98.4 4.1E-05 1.4E-09 98.7 30.0 352 255-646 62-531 (599)
284 3iu6_A Protein polybromo-1; PB 98.4 3.4E-07 1.2E-11 94.8 8.3 67 1646-1714 42-108 (147)
285 2ad6_A Methanol dehydrogenase 98.4 2.4E-05 8.1E-10 100.5 27.1 351 255-647 62-523 (571)
286 1flg_A Protein (quinoprotein e 98.4 0.00014 4.6E-09 93.7 34.0 357 255-647 68-545 (582)
287 2ece_A 462AA long hypothetical 98.4 2.5E-05 8.6E-10 95.8 24.6 197 253-505 93-352 (462)
288 1npe_A Nidogen, entactin; glyc 98.3 0.00019 6.6E-09 82.0 29.2 249 256-597 2-260 (267)
289 2ece_A 462AA long hypothetical 98.3 0.00014 4.9E-09 89.2 29.0 234 337-649 93-399 (462)
290 2ad6_A Methanol dehydrogenase 98.2 0.0001 3.5E-09 94.6 26.3 111 555-666 311-499 (571)
291 2iwa_A Glutamine cyclotransfer 98.2 8E-05 2.7E-09 86.1 22.8 214 232-505 8-237 (266)
292 1npe_A Nidogen, entactin; glyc 98.2 0.00043 1.5E-08 79.0 29.1 201 399-666 37-243 (267)
293 1w6s_A Methanol dehydrogenase 98.2 9.9E-05 3.4E-09 95.1 25.5 58 608-666 451-508 (599)
294 3nol_A Glutamine cyclotransfer 98.2 6.7E-05 2.3E-09 86.0 21.0 199 232-460 30-236 (262)
295 2iwa_A Glutamine cyclotransfer 98.2 0.00016 5.4E-09 83.6 23.5 194 400-662 23-238 (266)
296 1fwx_A Nitrous oxide reductase 98.1 1.9E-05 6.6E-10 99.9 16.5 269 253-622 99-434 (595)
297 1flg_A Protein (quinoprotein e 98.1 0.0011 3.9E-08 85.1 31.2 111 555-666 331-521 (582)
298 2fp8_A Strictosidine synthase; 98.1 0.00055 1.9E-08 80.6 26.0 240 286-618 19-312 (322)
299 3lqh_A Histone-lysine N-methyl 98.1 3.3E-06 1.1E-10 91.6 6.2 63 1652-1714 101-163 (183)
300 3s94_A LRP-6, low-density lipo 98.0 0.078 2.7E-06 68.6 46.3 353 239-660 79-466 (619)
301 2fp8_A Strictosidine synthase; 98.0 0.00099 3.4E-08 78.4 26.2 158 240-428 15-216 (322)
302 2p4o_A Hypothetical protein; p 97.9 0.0026 8.9E-08 74.4 28.6 247 275-607 22-277 (306)
303 3nok_A Glutaminyl cyclase; bet 97.9 0.00035 1.2E-08 80.2 20.0 194 234-460 44-246 (268)
304 3mbr_X Glutamine cyclotransfer 97.9 0.0004 1.4E-08 78.9 20.1 198 233-460 9-215 (243)
305 1k3i_A Galactose oxidase precu 97.9 0.00023 7.9E-09 92.8 20.4 281 290-650 190-530 (656)
306 3s94_A LRP-6, low-density lipo 97.9 0.086 2.9E-06 68.1 43.8 351 241-661 124-510 (619)
307 2p4o_A Hypothetical protein; p 97.8 0.012 4E-07 68.8 31.8 125 232-362 21-148 (306)
308 3nol_A Glutamine cyclotransfer 97.8 0.00078 2.7E-08 77.2 20.6 179 400-650 45-244 (262)
309 1k3i_A Galactose oxidase precu 97.8 0.00053 1.8E-08 89.4 20.6 270 332-685 190-529 (656)
310 3v64_C Agrin; beta propeller, 97.7 0.019 6.5E-07 68.7 32.3 258 243-594 33-293 (349)
311 3nok_A Glutaminyl cyclase; bet 97.7 0.00076 2.6E-08 77.4 18.7 179 400-649 57-253 (268)
312 3v64_C Agrin; beta propeller, 97.7 0.02 6.7E-07 68.6 32.2 244 288-627 36-283 (349)
313 3v65_B Low-density lipoprotein 97.7 0.017 5.7E-07 70.2 30.7 256 246-595 79-337 (386)
314 2xe4_A Oligopeptidase B; hydro 97.7 0.0024 8.2E-08 84.6 25.0 244 329-663 175-460 (751)
315 2xe4_A Oligopeptidase B; hydro 97.7 0.0035 1.2E-07 83.0 26.3 116 241-362 170-305 (751)
316 4a0p_A LRP6, LRP-6, low-densit 97.6 0.2 6.9E-06 64.8 41.3 352 241-664 163-552 (628)
317 4a0p_A LRP6, LRP-6, low-densit 97.6 0.26 9E-06 63.7 42.2 352 244-663 37-421 (628)
318 2xbg_A YCF48-like protein; pho 97.6 0.046 1.6E-06 64.7 32.2 276 243-617 35-320 (327)
319 2xbg_A YCF48-like protein; pho 97.6 0.052 1.8E-06 64.2 32.5 273 285-658 35-319 (327)
320 3v65_B Low-density lipoprotein 97.6 0.018 6.1E-07 70.0 29.2 203 399-665 117-322 (386)
321 3mbr_X Glutamine cyclotransfer 97.5 0.0043 1.5E-07 70.5 20.9 180 400-650 23-223 (243)
322 1ijq_A LDL receptor, low-densi 97.5 0.053 1.8E-06 63.8 31.1 205 399-665 31-242 (316)
323 3qqz_A Putative uncharacterize 97.5 0.033 1.1E-06 63.9 27.1 205 398-660 27-252 (255)
324 4hw6_A Hypothetical protein, I 97.4 0.03 1E-06 69.2 27.9 155 245-427 140-303 (433)
325 1ijq_A LDL receptor, low-densi 97.4 0.14 4.8E-06 60.1 32.1 237 257-585 3-247 (316)
326 3qqz_A Putative uncharacterize 97.4 0.047 1.6E-06 62.5 26.9 226 279-574 20-251 (255)
327 3ei3_A DNA damage-binding prot 97.4 0.34 1.2E-05 66.9 40.2 111 245-359 515-634 (1158)
328 3ott_A Two-component system se 97.3 0.96 3.3E-05 59.5 44.9 335 243-665 145-506 (758)
329 3tc9_A Hypothetical hydrolase; 97.3 0.019 6.4E-07 70.9 24.8 154 245-427 138-300 (430)
330 3p5b_L Low density lipoprotein 97.2 0.22 7.4E-06 60.7 32.7 244 299-636 85-337 (400)
331 3sov_A LRP-6, low-density lipo 97.2 0.083 2.8E-06 62.4 27.9 202 399-665 36-242 (318)
332 3p5b_L Low density lipoprotein 97.2 0.28 9.7E-06 59.7 32.8 248 257-595 85-339 (400)
333 3sov_A LRP-6, low-density lipo 97.2 0.13 4.3E-06 60.8 28.8 231 306-628 12-247 (318)
334 3tc9_A Hypothetical hydrolase; 97.1 0.064 2.2E-06 66.1 26.8 257 287-617 138-428 (430)
335 3ei3_A DNA damage-binding prot 97.1 0.59 2E-05 64.6 38.0 129 557-690 844-993 (1158)
336 4hw6_A Hypothetical protein, I 97.0 0.19 6.5E-06 62.0 29.0 257 287-618 140-432 (433)
337 2xzh_A Clathrin heavy chain 1; 96.9 0.86 2.9E-05 53.7 30.9 275 263-619 47-332 (365)
338 3m0c_C LDL receptor, low-densi 96.8 0.23 7.9E-06 65.9 29.7 206 399-665 425-636 (791)
339 3kya_A Putative phosphatase; s 96.8 0.28 9.5E-06 61.4 28.0 168 245-427 140-340 (496)
340 3m0c_C LDL receptor, low-densi 96.7 0.4 1.4E-05 63.6 30.1 231 305-627 402-640 (791)
341 1bpo_A Protein (clathrin); cla 96.6 1.5 5.1E-05 53.5 31.5 274 263-618 46-330 (494)
342 3ott_A Two-component system se 96.6 2.3 7.8E-05 55.9 36.6 330 245-663 192-547 (758)
343 2ism_A Putative oxidoreductase 96.6 0.49 1.7E-05 56.5 27.4 60 589-650 269-334 (352)
344 1n7d_A LDL receptor, low-densi 96.4 0.01 3.5E-07 77.9 12.3 115 548-666 498-619 (699)
345 2p9w_A MAL S 1 allergenic prot 96.4 0.13 4.4E-06 60.9 20.2 159 246-427 15-214 (334)
346 1n7d_A LDL receptor, low-densi 96.3 0.013 4.3E-07 77.1 12.5 229 306-627 385-622 (699)
347 3kya_A Putative phosphatase; s 96.3 0.78 2.7E-05 57.4 27.8 274 287-624 140-480 (496)
348 3amr_A 3-phytase; beta-propell 96.2 0.36 1.2E-05 57.5 22.4 194 254-504 39-262 (355)
349 3das_A Putative oxidoreductase 96.1 2.1 7.1E-05 51.2 29.1 81 280-361 26-116 (347)
350 2ism_A Putative oxidoreductase 96.1 1 3.4E-05 53.8 26.2 73 285-362 30-115 (352)
351 2p9w_A MAL S 1 allergenic prot 96.0 0.26 8.9E-06 58.3 19.9 112 548-661 65-215 (334)
352 3amr_A 3-phytase; beta-propell 95.7 1.1 3.7E-05 53.5 23.9 113 546-660 128-262 (355)
353 2g8s_A Glucose/sorbosone dehyd 95.7 3.5 0.00012 49.1 28.9 69 588-656 271-349 (353)
354 3a9g_A Putative uncharacterize 95.7 3.3 0.00011 49.4 28.5 62 588-649 259-330 (354)
355 3a9g_A Putative uncharacterize 95.6 4.9 0.00017 47.8 29.9 60 546-606 259-329 (354)
356 2vpj_A Kelch-like protein 12; 95.5 0.56 1.9E-05 53.9 20.5 103 556-663 159-280 (301)
357 3pbp_A Nucleoporin NUP82; beta 95.5 0.29 9.8E-06 59.6 18.0 156 252-424 29-208 (452)
358 2xn4_A Kelch-like protein 2; s 95.4 0.54 1.8E-05 54.1 19.6 105 556-663 155-278 (302)
359 2vpj_A Kelch-like protein 12; 95.3 0.49 1.7E-05 54.4 19.1 104 254-364 14-140 (301)
360 1cru_A Protein (soluble quinop 95.3 3.4 0.00012 51.1 27.6 56 600-655 369-430 (454)
361 3ii7_A Kelch-like protein 7; p 95.0 0.92 3.1E-05 52.3 20.0 103 556-663 149-274 (306)
362 2xn4_A Kelch-like protein 2; s 94.8 0.88 3E-05 52.3 19.1 63 556-621 204-278 (302)
363 3ii7_A Kelch-like protein 7; p 94.4 1.5 5.2E-05 50.4 20.1 102 256-364 13-130 (306)
364 4asc_A Kelch repeat and BTB do 94.4 1.4 4.8E-05 51.0 19.8 104 555-663 147-279 (315)
365 3das_A Putative oxidoreductase 94.3 12 0.0004 44.7 29.8 101 547-649 203-326 (347)
366 1xi4_A Clathrin heavy chain; a 94.3 2 6.8E-05 59.4 22.7 275 263-619 46-331 (1630)
367 2g8s_A Glucose/sorbosone dehyd 93.7 14 0.00049 43.7 27.3 59 546-605 271-339 (353)
368 1zgk_A Kelch-like ECH-associat 93.5 1.7 5.9E-05 50.2 18.0 102 556-662 168-288 (308)
369 1zgk_A Kelch-like ECH-associat 93.4 3.2 0.00011 47.8 20.3 64 556-622 215-290 (308)
370 2xzh_A Clathrin heavy chain 1; 93.2 17 0.00059 42.9 30.0 259 307-665 49-336 (365)
371 4asc_A Kelch repeat and BTB do 93.2 4.2 0.00014 47.0 20.8 60 257-318 7-78 (315)
372 1cru_A Protein (soluble quinop 92.8 24 0.00082 43.5 32.3 54 285-338 26-87 (454)
373 3sre_A PON1, serum paraoxonase 92.7 18 0.0006 43.3 25.4 195 305-584 81-308 (355)
374 3sre_A PON1, serum paraoxonase 92.6 5.7 0.00019 47.5 20.9 101 546-650 165-286 (355)
375 2woz_A Kelch repeat and BTB do 92.2 3.5 0.00012 47.8 18.2 65 555-622 157-234 (318)
376 3pbp_A Nucleoporin NUP82; beta 90.3 3.1 0.00011 50.7 15.2 109 547-657 67-208 (452)
377 1bpo_A Protein (clathrin); cla 89.5 46 0.0016 40.8 33.6 260 306-665 47-335 (494)
378 2uvk_A YJHT; unknown function, 89.4 11 0.00037 44.2 19.1 53 611-665 286-346 (357)
379 1xi4_A Clathrin heavy chain; a 89.2 25 0.00084 49.0 24.0 74 591-665 262-335 (1630)
380 1tl2_A L10, protein (tachylect 88.9 13 0.00043 41.6 17.5 102 548-656 90-205 (236)
381 2uvk_A YJHT; unknown function, 87.9 10 0.00035 44.4 17.6 56 568-626 286-349 (357)
382 1tl2_A L10, protein (tachylect 87.5 1.7 5.7E-05 48.6 9.4 104 547-658 42-160 (236)
383 2be1_A Serine/threonine-protei 85.9 30 0.001 41.0 19.8 118 298-431 11-133 (339)
384 3s25_A Hypothetical 7-bladed b 85.7 13 0.00044 43.3 16.5 125 551-684 109-240 (302)
385 2woz_A Kelch repeat and BTB do 84.2 24 0.00083 40.5 18.0 108 250-364 52-187 (318)
386 3p8d_A Medulloblastoma antigen 83.1 1.3 4.5E-05 39.8 4.8 55 1532-1600 3-57 (67)
387 2zwa_A Leucine carboxyl methyl 80.7 34 0.0012 44.5 19.1 67 555-621 499-579 (695)
388 3qii_A PHD finger protein 20; 78.5 2.1 7.3E-05 40.2 4.7 55 1532-1600 18-72 (85)
389 2wg3_C Hedgehog-interacting pr 78.5 1.4E+02 0.0046 36.9 31.3 31 328-360 14-44 (463)
390 2be1_A Serine/threonine-protei 77.7 2.8 9.6E-05 49.8 6.8 109 558-666 11-135 (339)
391 3qhy_B Beta-lactamase inhibito 77.5 1E+02 0.0036 35.1 21.5 105 547-661 142-246 (282)
392 2zwa_A Leucine carboxyl methyl 74.5 54 0.0018 42.6 18.3 108 253-364 396-525 (695)
393 3qhy_B Beta-lactamase inhibito 72.3 1.4E+02 0.0047 34.0 22.3 89 264-361 41-129 (282)
394 3uc1_A DNA gyrase subunit A; D 70.1 1.7E+02 0.0059 34.2 19.7 102 254-360 108-227 (327)
395 4a4f_A SurviVal of motor neuro 69.5 5.8 0.0002 35.3 5.1 55 1533-1599 6-61 (64)
396 3b7f_A Glycosyl hydrolase, BNR 68.5 1.9E+02 0.0065 34.1 30.4 97 256-357 23-143 (394)
397 3s25_A Hypothetical 7-bladed b 66.5 1.9E+02 0.0064 33.3 27.1 97 251-360 21-137 (302)
398 3s6w_A Tudor domain-containing 65.9 8.5 0.00029 32.8 5.3 50 1535-1596 1-51 (54)
399 3uc1_A DNA gyrase subunit A; D 65.7 2.1E+02 0.0071 33.5 24.6 164 245-428 43-228 (327)
400 1mhn_A SurviVal motor neuron p 64.6 9.9 0.00034 33.1 5.5 53 1534-1598 2-55 (59)
401 2equ_A PHD finger protein 20-l 63.6 9.6 0.00033 35.0 5.4 52 1533-1598 7-58 (74)
402 1g5v_A SurviVal motor neuron p 61.9 12 0.00042 35.5 5.9 56 1533-1600 8-64 (88)
403 1suu_A DNA gyrase subunit A; t 61.8 2.3E+02 0.0079 32.7 22.7 102 556-660 113-230 (312)
404 2wg3_C Hedgehog-interacting pr 61.3 57 0.002 40.2 13.7 106 547-652 15-160 (463)
405 2ldm_A Uncharacterized protein 65.0 1.8 6.1E-05 40.5 0.0 54 1532-1599 3-56 (81)
406 4gq2_M Nucleoporin NUP120; bet 56.3 86 0.0029 42.3 15.2 38 287-324 237-274 (950)
407 4gq2_M Nucleoporin NUP120; bet 56.2 84 0.0029 42.4 15.1 39 546-584 236-274 (950)
408 3pnw_C Tudor domain-containing 52.7 19 0.00064 33.3 5.5 55 1534-1600 16-71 (77)
409 3no0_A DNA gyrase subunit A; D 52.7 3E+02 0.01 31.2 22.6 163 244-428 24-196 (276)
410 3h8z_A FragIle X mental retard 49.2 19 0.00064 36.6 5.3 82 1505-1597 27-115 (128)
411 3b7f_A Glycosyl hydrolase, BNR 48.4 3.9E+02 0.013 31.3 28.7 58 547-606 233-296 (394)
412 3sbq_A Nitrous-oxide reductase 47.6 51 0.0017 41.6 9.7 106 542-650 319-454 (638)
413 4hvt_A Ritya.17583.B, post-pro 37.7 7.9E+02 0.027 31.8 23.7 72 546-618 350-429 (711)
414 1zi0_A DNA gyrase subunit A; b 35.5 5.6E+02 0.019 29.4 25.0 161 246-428 44-226 (307)
415 3l6v_A GYRA, DNA gyrase subuni 35.1 6.3E+02 0.022 29.9 27.0 157 251-428 3-180 (370)
416 3mvd_K Regulator of chromosome 33.7 6.6E+02 0.023 29.7 36.6 109 547-661 243-374 (423)
417 3kci_A Probable E3 ubiquitin-p 32.4 6.7E+02 0.023 29.4 30.1 110 547-661 212-345 (389)
418 1wp5_A Topoisomerase IV; broke 31.4 6.7E+02 0.023 29.0 23.7 161 246-428 41-225 (323)
419 3kci_A Probable E3 ubiquitin-p 30.8 7.1E+02 0.024 29.2 26.1 123 287-427 106-240 (389)
420 1suu_A DNA gyrase subunit A; t 30.7 6.6E+02 0.023 28.8 27.3 203 252-505 5-231 (312)
421 4hvt_A Ritya.17583.B, post-pro 27.9 1.1E+03 0.037 30.4 23.7 96 565-663 318-431 (711)
422 1zi0_A DNA gyrase subunit A; b 27.8 7.3E+02 0.025 28.4 25.6 213 295-575 1-225 (307)
423 3zwu_A Alkaline phosphatase PH 25.8 1.4E+02 0.0047 38.1 8.9 58 246-303 478-548 (592)
424 3l6v_A GYRA, DNA gyrase subuni 24.8 9.2E+02 0.031 28.5 25.3 113 243-360 45-179 (370)
425 4fhn_B Nucleoporin NUP120; pro 23.9 1.2E+02 0.004 41.9 8.5 38 547-584 239-276 (1139)
426 2a7y_A Hypothetical protein RV 21.7 1.1E+02 0.0038 28.4 4.9 48 1536-1593 6-55 (83)
427 3no0_A DNA gyrase subunit A; D 21.2 9.1E+02 0.031 27.1 23.9 118 287-428 25-146 (276)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.5e-42 Score=447.36 Aligned_cols=436 Identities=15% Similarity=0.200 Sum_probs=316.4
Q ss_pred CCCCCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 048801 189 HMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVK 268 (1715)
Q Consensus 189 ~~~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIr 268 (1715)
..+...+..++|.+.|..++.... .....+.+...+.+..|.+|.+.|++++|+|||++||+|+.||+|+
T Consensus 15 ~~~~g~~~~~~~spdg~~l~~~~~----------~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~ 84 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGDKIQYCNG----------TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVR 84 (611)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEET----------TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CcccCceeEEeeCCCCCEEEeCCC----------CEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEE
Confidence 344566677888887765544321 1112233445667888999999999999999999999999999999
Q ss_pred EEeCCCCc--EEEEe--------------------------------------------cCCCCCeEEEEECCCCC-EEE
Q 048801 269 IWSMETAF--CLASC--------------------------------------------RGHEGDITDLAVSSNNT-LVA 301 (1715)
Q Consensus 269 IWDl~tgk--~l~tL--------------------------------------------~gHs~~VtsLafSpDg~-lLA 301 (1715)
|||+.++. ....+ .+|...|++++|+|++. +|+
T Consensus 85 lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~ 164 (611)
T 1nr0_A 85 IWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRII 164 (611)
T ss_dssp EEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred EeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEE
Confidence 99986432 22222 35666677777777765 588
Q ss_pred EEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCcc
Q 048801 302 SASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKS 381 (1715)
Q Consensus 302 SGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~ 381 (1715)
+|+.|++|++||+.+++++..+.+|...|++++|+|++. +|++++.|++|++||+.+++....+...
T Consensus 165 s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~---~las~s~D~~i~lwd~~~g~~~~~~~~~---------- 231 (611)
T 1nr0_A 165 SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS---LFASTGGDGTIVLYNGVDGTKTGVFEDD---------- 231 (611)
T ss_dssp EEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS---EEEEEETTSCEEEEETTTCCEEEECBCT----------
T ss_pred EEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCC---EEEEEECCCcEEEEECCCCcEeeeeccc----------
Confidence 999999999999999999999999999999999999998 8999999999999999887754433110
Q ss_pred CCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCC--------------------------
Q 048801 382 NVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSE-------------------------- 435 (1715)
Q Consensus 382 ~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~-------------------------- 435 (1715)
......|...|.+++|+|+|++|++|+.|++|+|||+.+++.....
T Consensus 232 --------~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d 303 (611)
T 1nr0_A 232 --------SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 303 (611)
T ss_dssp --------TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT
T ss_pred --------cccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCC
Confidence 0112257888999999999999999999999999999876432110
Q ss_pred --------CCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCc
Q 048801 436 --------QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 507 (1715)
Q Consensus 436 --------~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~ 507 (1715)
........+.+|...|.+++|+|++ .+|++++.||+|++||+.++.
T Consensus 304 ~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg--------------------------~~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 304 GFINFVNPELGSIDQVRYGHNKAITALSSSADG--------------------------KTLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp CCEEEEETTTTEEEEEECCCSSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEETTTCC
T ss_pred CcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC--------------------------CEEEEEeCCCcEEEEECCCCc
Confidence 0012334567899999999999987 566777777777777766543
Q ss_pred cCcccc--c-------------------ccccccccCCCCCCCC-----------C------CCCC--------------
Q 048801 508 SHGKVG--R-------------------WTRAYHLKVPPPPLPP-----------Q------PPRG-------------- 535 (1715)
Q Consensus 508 ~~~~~~--~-------------------~~~~~~l~~~~~~~~~-----------~------~~~g-------------- 535 (1715)
...... . +.....+......... . ...+
T Consensus 358 ~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~ 437 (611)
T 1nr0_A 358 SNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 437 (611)
T ss_dssp EEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEE
T ss_pred eeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEE
Confidence 211100 0 0000000000000000 0 0000
Q ss_pred --CCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCce--EEEEecCCCCeEEEEEccCCCcEEEEEeCCCc
Q 048801 536 --GPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL--VHSLTGHSASSYVLDVHPFNPRIAMSAGYDGR 611 (1715)
Q Consensus 536 --~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~--l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGt 611 (1715)
... ....+...+.+++|+|||++|++|+.|++|+|||+.++.. +.. .+|...|++|+|+| ++.+|++++.|++
T Consensus 438 ~~~~~-~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fsp-dg~~las~s~d~~ 514 (611)
T 1nr0_A 438 SHGKL-TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSN-NGAFLVATDQSRK 514 (611)
T ss_dssp ETTEE-EEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECT-TSSEEEEEETTSC
T ss_pred eCCce-eeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECC-CCCEEEEEcCCCC
Confidence 001 1112556789999999999999999999999999987654 234 68999999999999 7889999999999
Q ss_pred EEEEECCC-CceEEE--EEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-c--------cccccceeecCCCc
Q 048801 612 TIVWDIWE-GTPIRI--YEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGES-Q--------KDAKYDQFFLGDYR 679 (1715)
Q Consensus 612 I~VWDl~t-gk~l~t--l~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~-~--------k~~~~~~~fs~D~r 679 (1715)
|++|++.+ ++++.. +..|...|.+++|+|||++||+|+.||.|+||++.+++. . ........|++|++
T Consensus 515 v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~ 594 (611)
T 1nr0_A 515 VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT 594 (611)
T ss_dssp EEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE
T ss_pred EEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE
Confidence 99999987 665543 334888999999999999999999999999999987652 2 12234567899998
Q ss_pred cEEEcC
Q 048801 680 PLIRDS 685 (1715)
Q Consensus 680 ~L~~d~ 685 (1715)
|+...
T Consensus 595 -l~s~~ 599 (611)
T 1nr0_A 595 -IVSAG 599 (611)
T ss_dssp -EEEEE
T ss_pred -EEEec
Confidence 66543
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.6e-41 Score=430.60 Aligned_cols=451 Identities=22% Similarity=0.357 Sum_probs=342.1
Q ss_pred eeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 234 k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
+..++|.||.+.|+||+|+|||++||+|+.|++|+|||. ++++++++.+|.+.|++|+|+||+++||+++.|++|+|||
T Consensus 7 ~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd 85 (577)
T 2ymu_A 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 455789999999999999999999999999999999995 7899999999999999999999999999999999999999
Q ss_pred CCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCcc------------
Q 048801 314 LPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKS------------ 381 (1715)
Q Consensus 314 l~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~------------ 381 (1715)
+ +++++..+.+|...|.+++|+|++. +|++++.|+.+++|+.......... .....+....
T Consensus 86 ~-~~~~~~~~~~~~~~v~~~~~s~d~~---~l~~~~~d~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~ 158 (577)
T 2ymu_A 86 R-NGQLLQTLTGHSSSVRGVAFSPDGQ---TIASASDDKTVKLWNRNGQLLQTLT---GHSSSVWGVAFSPDGQTIASAS 158 (577)
T ss_dssp T-TSCEEEEECCCSSCEEEEEECTTSS---EEEEEETTSCEEEEETTCCEEEEEC---CCSSCEEEEEECTTSSCEEEEE
T ss_pred C-CCCEEEEEECCCCCEEEEEECCCCC---EEEEEcCCCceeecccccceeeecc---CCCCceeeeeeecCCccceecc
Confidence 6 6888999999999999999999998 8999999999999997644321111 0000000000
Q ss_pred ------CCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEE
Q 048801 382 ------NVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQ 455 (1715)
Q Consensus 382 ------~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLa 455 (1715)
..............+...|.+++|+|++.+|++|+.||.|++|+... ..+..+.+|...|.+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~----------~~~~~~~~~~~~v~~~~ 228 (577)
T 2ymu_A 159 DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG----------QLLQTLTGHSSSVRGVA 228 (577)
T ss_dssp TTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS----------CEEEEEECCSSCEEEEE
T ss_pred cccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCC----------cEEEEEecCCCCEEEEE
Confidence 00000111122334667899999999999999999999999999642 34677889999999999
Q ss_pred EccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCC
Q 048801 456 FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRG 535 (1715)
Q Consensus 456 fspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g 535 (1715)
|+|++ ..|++++.||.|++|+...
T Consensus 229 ~s~dg--------------------------~~l~~~~~d~~i~~w~~~~------------------------------ 252 (577)
T 2ymu_A 229 FSPDG--------------------------QTIASASDDKTVKLWNRNG------------------------------ 252 (577)
T ss_dssp ECTTS--------------------------SCEEEEETTSCEEEECTTS------------------------------
T ss_pred ECCCC--------------------------CEEEEEeCCCEEEEEeCCC------------------------------
Confidence 99986 7899999999999998642
Q ss_pred CCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEE
Q 048801 536 GPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVW 615 (1715)
Q Consensus 536 ~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VW 615 (1715)
..+..+.+|...|++++|+|++++|++++.|+.|++|+. +++.+..+.+|...|.+++|+| ++.+|++++.||+|++|
T Consensus 253 ~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w 330 (577)
T 2ymu_A 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLW 330 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEE
Confidence 123345678889999999999999999999999999996 6788899999999999999999 77899999999999999
Q ss_pred ECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc------ccccceeecCCCccEEEcCCCCe
Q 048801 616 DIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK------DAKYDQFFLGDYRPLIRDSLGNV 689 (1715)
Q Consensus 616 Dl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k------~~~~~~~fs~D~r~L~~d~~g~v 689 (1715)
|+. +..+..+..|...|.+++|+|+|++|++++.||.|++|+. +++... .......|++|++.|+....+..
T Consensus 331 ~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~ 408 (577)
T 2ymu_A 331 NRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 408 (577)
T ss_dssp ETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred eCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCE
Confidence 974 5667778888999999999999999999999999999996 444432 22345679999999887654443
Q ss_pred eecccccccCcCCCCCcccCCCCCCCCCccchhhhhhcccccceeecCCCCeEEeeeccccCccCCCCCchhhhcccccC
Q 048801 690 LDQETQLVPHRRNIQDPLCDSSMIPYEEPYQSMYQQRRLGALGIEWRPSSIKLAIGLDFSLGQDYAMPPLEDLERMMEPV 769 (1715)
Q Consensus 690 ld~~tq~~p~~~~~~~~lvD~~~~p~p~~~q~~~q~r~~g~~~l~~sPdg~~lAvg~~~~l~~~~~~~P~~d~~~~i~~~ 769 (1715)
+..... .... .+.+ ....-....++|+|++..++.+.....-.-+.+.. .+-..+...
T Consensus 409 v~~~~~---~~~~----------------~~~~-~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--~~~~~~~~~ 466 (577)
T 2ymu_A 409 VKLWNR---NGQL----------------LQTL-TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG--QLLQTLTGH 466 (577)
T ss_dssp EEEECT---TCCE----------------EEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS--CEEEEEECC
T ss_pred EEEEeC---CCCE----------------EEEe-cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC--CEEEEEcCC
Confidence 221110 0000 0000 00011234689999999999884322111111100 000112334
Q ss_pred CCccccCcccCcccc
Q 048801 770 PEFIDPVYWEPENEV 784 (1715)
Q Consensus 770 p~~i~~~~~~p~~~~ 784 (1715)
...+..+.|-|+...
T Consensus 467 ~~~v~~~~~spd~~~ 481 (577)
T 2ymu_A 467 SSSVRGVAFSPDGQT 481 (577)
T ss_dssp SSCEEEEEECTTSCE
T ss_pred CCCEEEEEEcCCCCE
Confidence 455666777777543
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.2e-40 Score=431.68 Aligned_cols=438 Identities=14% Similarity=0.177 Sum_probs=325.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC--
Q 048801 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL-- 318 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~-- 318 (1715)
.+.+.+.+++|+|||++||+++ ++.|+||++.++.....+.+|...|++++|+|+|++||+|+.||+|+|||+.++.
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~ 94 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 94 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce
Confidence 4578889999999999999998 5699999999999999999999999999999999999999999999999997654
Q ss_pred ceEEEeCCCCCeEEEEecCCCCcceEEEEecCC----CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 319 PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD----GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 319 ~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D----GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
....+.+|.+.|.+++|+|++. +|++++.+ +.|++||. +.... ...
T Consensus 95 ~~~~~~~~~~~v~~v~fs~dg~---~l~~~~~~~~~~~~v~~wd~--~~~~~-------------------------~l~ 144 (611)
T 1nr0_A 95 LKTTIPVFSGPVKDISWDSESK---RIAAVGEGRERFGHVFLFDT--GTSNG-------------------------NLT 144 (611)
T ss_dssp EEEEEECSSSCEEEEEECTTSC---EEEEEECCSSCSEEEEETTT--CCBCB-------------------------CCC
T ss_pred eeEeecccCCceEEEEECCCCC---EEEEEECCCCceeEEEEeeC--CCCcc-------------------------eec
Confidence 3567889999999999999998 77877764 47888874 32211 123
Q ss_pred CCCcceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccc
Q 048801 395 LQSHQILCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKE 473 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~ 473 (1715)
.|...|.+++|+|++. .|++|+.|+.|++||..+ ...+..+.+|...|.+++|+|++
T Consensus 145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~---------~~~~~~l~~H~~~V~~v~fspdg------------- 202 (611)
T 1nr0_A 145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP---------FKFKSTFGEHTKFVHSVRYNPDG------------- 202 (611)
T ss_dssp CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT---------BEEEEEECCCSSCEEEEEECTTS-------------
T ss_pred CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC---------CeEeeeeccccCceEEEEECCCC-------------
Confidence 4677899999999987 599999999999999865 34567889999999999999987
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEe
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW 553 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtslaf 553 (1715)
.+|++++.||+|++||+.+++....+. .......+|...|.+++|
T Consensus 203 -------------~~las~s~D~~i~lwd~~~g~~~~~~~----------------------~~~~~~~~h~~~V~~v~~ 247 (611)
T 1nr0_A 203 -------------SLFASTGGDGTIVLYNGVDGTKTGVFE----------------------DDSLKNVAHSGSVFGLTW 247 (611)
T ss_dssp -------------SEEEEEETTSCEEEEETTTCCEEEECB----------------------CTTSSSCSSSSCEEEEEE
T ss_pred -------------CEEEEEECCCcEEEEECCCCcEeeeec----------------------cccccccccCCCEEEEEE
Confidence 799999999999999988754322110 000112368889999999
Q ss_pred CCCCCEEEEEecCCeEEEEECCCCceEE-------------------------------------------EEecCCCCe
Q 048801 554 SLDNRFVLAAIMDCRICVWNAVDGSLVH-------------------------------------------SLTGHSASS 590 (1715)
Q Consensus 554 SPDG~~LaTgs~DGtI~IWDl~sg~~l~-------------------------------------------tL~gH~~~V 590 (1715)
+|+|++|++|+.|++|+|||+.+++++. .+.+|...|
T Consensus 248 spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v 327 (611)
T 1nr0_A 248 SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAI 327 (611)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCE
Confidence 9999999999999999999998876544 345799999
Q ss_pred EEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE-------------------------------------------
Q 048801 591 YVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE------------------------------------------- 627 (1715)
Q Consensus 591 ~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~------------------------------------------- 627 (1715)
++++|+| ++.+|++++.||+|++||+.++++...+.
T Consensus 328 ~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~ 406 (611)
T 1nr0_A 328 TALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAV 406 (611)
T ss_dssp EEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCC
T ss_pred EEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccccccee
Confidence 9999999 78899999999999999998765433210
Q ss_pred ---------------------------------------cccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc---
Q 048801 628 ---------------------------------------IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ--- 665 (1715)
Q Consensus 628 ---------------------------------------~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~--- 665 (1715)
.+...+.+++|+|||++||+|+.||.|+||++.++...
T Consensus 407 ~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~ 486 (611)
T 1nr0_A 407 ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVK 486 (611)
T ss_dssp EEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred eeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeee
Confidence 01234678999999999999999999999999776431
Q ss_pred ----cccccceeecCCCccEEEcCC-CCe--eecccccccCcCCCCCcccCCCCCCCCCccchhhhhhcccccceeecCC
Q 048801 666 ----KDAKYDQFFLGDYRPLIRDSL-GNV--LDQETQLVPHRRNIQDPLCDSSMIPYEEPYQSMYQQRRLGALGIEWRPS 738 (1715)
Q Consensus 666 ----k~~~~~~~fs~D~r~L~~d~~-g~v--ld~~tq~~p~~~~~~~~lvD~~~~p~p~~~q~~~q~r~~g~~~l~~sPd 738 (1715)
........|+||++.|+.... +.+ ++...... .. ...+ ..........++|+||
T Consensus 487 ~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~--~~--~~~~---------------~~~H~~~V~~v~fspd 547 (611)
T 1nr0_A 487 TIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE--LA--HTNS---------------WTFHTAKVACVSWSPD 547 (611)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE--ES--CCCC---------------CCCCSSCEEEEEECTT
T ss_pred ccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCc--ee--eeee---------------eeecccceeEEEECCC
Confidence 223456789999999886543 332 22111000 00 0000 0001123457899999
Q ss_pred CCeEEeeeccccCccCCCCCchhhh-cccccC-CCccccCcccCcccccc
Q 048801 739 SIKLAIGLDFSLGQDYAMPPLEDLE-RMMEPV-PEFIDPVYWEPENEVIS 786 (1715)
Q Consensus 739 g~~lAvg~~~~l~~~~~~~P~~d~~-~~i~~~-p~~i~~~~~~p~~~~~~ 786 (1715)
|.+||.+.....-.-+.+......- ...... ...+..+.|-|+..+++
T Consensus 548 g~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~l~s 597 (611)
T 1nr0_A 548 NVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVS 597 (611)
T ss_dssp SSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEE
T ss_pred CCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCEEEE
Confidence 9999998433211111111100000 011222 45677788888766544
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.2e-39 Score=412.89 Aligned_cols=354 Identities=26% Similarity=0.431 Sum_probs=311.8
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEE
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRV 311 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrV 311 (1715)
..+.+..+.+|...|.+++|+|+|++|++++.|+.|++|+. +++.+..+.+|...|++++|+|++.+|++++.|+.|++
T Consensus 210 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~ 288 (577)
T 2ymu_A 210 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKL 288 (577)
T ss_dssp TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence 45678889999999999999999999999999999999996 57888999999999999999999999999999999999
Q ss_pred EECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 312 WRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 312 WDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
|+. +++.+..+.+|...|++++|+|++. +|++++.||+|++||+..... ..
T Consensus 289 w~~-~~~~~~~~~~h~~~v~~~~~~~~~~---~l~t~~~d~~i~~w~~~~~~~-~~------------------------ 339 (577)
T 2ymu_A 289 WNR-NGQLLQTLTGHSSSVWGVAFSPDGQ---TIASASDDKTVKLWNRNGQHL-QT------------------------ 339 (577)
T ss_dssp EET-TSCEEEEECCCSSCEEEEEECTTSS---EEEEEETTSCEEEEETTSCEE-EE------------------------
T ss_pred EeC-CCcEEEEEecCCCCeEEEEECCCCC---EEEEEeCCCeEEEEeCCCCee-EE------------------------
Confidence 996 5778889999999999999999987 899999999999999764432 11
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccc
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAF 471 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~ 471 (1715)
...|...|.+++|+|+|.+|++|+.||.|++|+... ..+..+.+|...|.+++|+|++
T Consensus 340 -~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~----------~~~~~~~~~~~~v~~~~~s~dg----------- 397 (577)
T 2ymu_A 340 -LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG----------QLLQTLTGHSSSVRGVAFSPDG----------- 397 (577)
T ss_dssp -ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC----------CEEEEEECCSSCEEEEEECTTS-----------
T ss_pred -EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC----------CEEEEecCCCCCeEEEEECCCC-----------
Confidence 123466799999999999999999999999999642 3467788999999999999987
Q ss_pred cccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEE
Q 048801 472 KEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMI 551 (1715)
Q Consensus 472 ~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsl 551 (1715)
.+|++++.|+.|++||... .....+..|...|+++
T Consensus 398 ---------------~~l~~~~~d~~v~~~~~~~------------------------------~~~~~~~~~~~~v~~~ 432 (577)
T 2ymu_A 398 ---------------QTIASASDDKTVKLWNRNG------------------------------QLLQTLTGHSSSVWGV 432 (577)
T ss_dssp ---------------SCEEEEETTSEEEEECTTC------------------------------CEEEEEECCSSCEEEE
T ss_pred ---------------CEEEEEeCCCEEEEEeCCC------------------------------CEEEEecCCCCCeEEE
Confidence 7899999999999998542 1234456788899999
Q ss_pred EeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccc
Q 048801 552 VWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRF 631 (1715)
Q Consensus 552 afSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~ 631 (1715)
+|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+| ++.+|++++.|+.|+|||. +++++..+.+|..
T Consensus 433 ~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~sp-d~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~ 509 (577)
T 2ymu_A 433 AFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS 509 (577)
T ss_dssp EECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT-TSCEEEEEETTSEEEEEET-TSCEEEEEECCSS
T ss_pred EECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCC
Confidence 99999999999999999999996 6788999999999999999999 7889999999999999995 7899999999999
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc------ccccceeecCCCccEEEcCC
Q 048801 632 KLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK------DAKYDQFFLGDYRPLIRDSL 686 (1715)
Q Consensus 632 ~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k------~~~~~~~fs~D~r~L~~d~~ 686 (1715)
.|.+++|+|||++||+++.||.|+|||. +|+.+. .......|+||++.|+....
T Consensus 510 ~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~ 569 (577)
T 2ymu_A 510 SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASS 569 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred CEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence 9999999999999999999999999996 565543 23345689999998886543
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-39 Score=453.31 Aligned_cols=473 Identities=19% Similarity=0.229 Sum_probs=338.8
Q ss_pred CCCCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 048801 190 MQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKI 269 (1715)
Q Consensus 190 ~~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrI 269 (1715)
.|.+.|.++.|.+.|..++.+ ........|.+.+.+.+..+.+|.+.|++++|+|+|++||+|+.||.|+|
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~---------~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~v 683 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASC---------GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKI 683 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEE---------ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cccccEEEEEECCCCCEEEEE---------eCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEE
Confidence 567888888888877544433 23333445566677889999999999999999999999999999999999
Q ss_pred EeCCCCcEEEEecCCCCCeEEEEECC--CCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEE
Q 048801 270 WSMETAFCLASCRGHEGDITDLAVSS--NNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLS 347 (1715)
Q Consensus 270 WDl~tgk~l~tL~gHs~~VtsLafSp--Dg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaS 347 (1715)
||+.+++.+..+.+|...|.+++|+| ++.+|++|+.||.|++||+.++.++..+.+|.+.|++++|+|++. +|++
T Consensus 684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~---~l~s 760 (1249)
T 3sfz_A 684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE---LLAS 760 (1249)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTT---EEEE
T ss_pred EECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCC---EEEE
Confidence 99999999999999999999999999 566999999999999999999999999999999999999999988 8999
Q ss_pred ecCCCcEEEEecCCCCCcceecCCCCCCCc-----------cCccCCC-------------------CCCCCCCCCCCCC
Q 048801 348 SSDDGTCRIWDARYSQYSPRIYLPKPPDAI-----------TGKSNVP-------------------SNNGPSSSNGLQS 397 (1715)
Q Consensus 348 gS~DGtVrIWDl~tg~~l~~i~~~~~~~~i-----------~g~~~~~-------------------~~~~~~~~~~~h~ 397 (1715)
++.||+|++||+.++.....+......... ......+ ...........|.
T Consensus 761 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~ 840 (1249)
T 3sfz_A 761 CSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHH 840 (1249)
T ss_dssp EESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSS
T ss_pred EECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCC
Confidence 999999999999988765544332211000 0000000 0000011122567
Q ss_pred cceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccc----cccccccc
Q 048801 398 HQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS----AMSDAFKE 473 (1715)
Q Consensus 398 ~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~----~~~~~~~~ 473 (1715)
..|.+++|+|++.++++|+.+|.|++|++.++ ..+..+.+|...|.+++|+|++..... +....+..
T Consensus 841 ~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~---------~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~ 911 (1249)
T 3sfz_A 841 STIQYCDFSPYDHLAVIALSQYCVELWNIDSR---------LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET 911 (1249)
T ss_dssp SCCCEEEECSSTTEEEEECSSSCEEEEETTTT---------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC---------ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 88999999999999999999999999999864 456778899999999999998621110 00111100
Q ss_pred ccc------------------------------------------------c-cccCCcccCceEEEEcCCCeEEEEecC
Q 048801 474 ENV------------------------------------------------P-KFKNSWFCHDNIVTCSRDGSAIIWIPR 504 (1715)
Q Consensus 474 ~~~------------------------------------------------~-~~~~s~~~~~~LaSgS~DGsIrIWDl~ 504 (1715)
... . .......++..+++|+.||.|.+|++.
T Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~ 991 (1249)
T 3sfz_A 912 KKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELP 991 (1249)
T ss_dssp HHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETT
T ss_pred cccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcC
Confidence 000 0 000000134466666666666666666
Q ss_pred CCccCcccccc-cccccccCCCCCCCCCC-CCCCCc----------ccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEE
Q 048801 505 SRRSHGKVGRW-TRAYHLKVPPPPLPPQP-PRGGPR----------QRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVW 572 (1715)
Q Consensus 505 t~~~~~~~~~~-~~~~~l~~~~~~~~~~~-~~g~~~----------~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IW 572 (1715)
++......... .....+...+....... ...+.+ .....|...|.+++|++++ .+++++.|+.|++|
T Consensus 992 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vw 1070 (1249)
T 3sfz_A 992 NNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVW 1070 (1249)
T ss_dssp TTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEE
T ss_pred CCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEE
Confidence 54432211100 00000111000000000 000000 0122455556666666644 34556666777777
Q ss_pred ECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCC
Q 048801 573 NAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVG 652 (1715)
Q Consensus 573 Dl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG 652 (1715)
|+.+++.+..+.+|.+.|++++|+| ++.++++++.||+|++||+.+++++..+.+|...|.+++|+|||++||+++.||
T Consensus 1071 d~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg 1149 (1249)
T 3sfz_A 1071 NVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNG 1149 (1249)
T ss_dssp ETTTTCCCEEEECCSSCCCCEEECS-SSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred ECCCCceeEEEcccCCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCC
Confidence 7777777888889999999999999 778889999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCcccccc---------------ccceeecCCCccEEEcC
Q 048801 653 QIYLLNTGQGESQKDA---------------KYDQFFLGDYRPLIRDS 685 (1715)
Q Consensus 653 ~I~IWdl~tGe~~k~~---------------~~~~~fs~D~r~L~~d~ 685 (1715)
.|+||++.+|+..... .....|++|++.|+...
T Consensus 1150 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~ 1197 (1249)
T 3sfz_A 1150 EIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1197 (1249)
T ss_dssp CCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES
T ss_pred EEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC
Confidence 9999999998765432 34567999999887654
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.5e-39 Score=400.55 Aligned_cols=308 Identities=20% Similarity=0.325 Sum_probs=270.8
Q ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC
Q 048801 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD 316 (1715)
Q Consensus 237 ~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t 316 (1715)
..|.||.+.|++++|+|++.+|++|+.||+|+|||+.+++.+.++.+|...|++++|+|++.+|++|+.|++|+|||+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCC
Q 048801 317 GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396 (1715)
Q Consensus 317 g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h 396 (1715)
+.++..+.+|...|++++|+|++. +|++|+.|++|++||+.++..+..+ ..|
T Consensus 182 ~~~~~~~~~h~~~V~~v~~~p~~~---~l~s~s~D~~i~~wd~~~~~~~~~~-------------------------~~h 233 (410)
T 1vyh_C 182 FECIRTMHGHDHNVSSVSIMPNGD---HIVSASRDKTIKMWEVQTGYCVKTF-------------------------TGH 233 (410)
T ss_dssp SCEEECCCCCSSCEEEEEECSSSS---EEEEEETTSEEEEEETTTCCEEEEE-------------------------ECC
T ss_pred CceeEEEcCCCCCEEEEEEeCCCC---EEEEEeCCCeEEEEECCCCcEEEEE-------------------------eCC
Confidence 999999999999999999999987 8999999999999999988755443 234
Q ss_pred CcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccc
Q 048801 397 SHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENV 476 (1715)
Q Consensus 397 ~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~ 476 (1715)
...|.+++|+++|.+|++|+.||.|++||+.++. ....+.+|...|.+++|+|+.....
T Consensus 234 ~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~---------~~~~~~~h~~~v~~~~~~~~~~~~~------------ 292 (410)
T 1vyh_C 234 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE---------CKAELREHRHVVECISWAPESSYSS------------ 292 (410)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---------EEEEECCCSSCEEEEEECCSCGGGG------------
T ss_pred CccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---------eeeEecCCCceEEEEEEcCcccccc------------
Confidence 6679999999999999999999999999998743 4567889999999999998751000
Q ss_pred ccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC
Q 048801 477 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD 556 (1715)
Q Consensus 477 ~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD 556 (1715)
+.. ............
T Consensus 293 --------------------------~~~---------------------------------------~~~~~~~~~~~~ 307 (410)
T 1vyh_C 293 --------------------------ISE---------------------------------------ATGSETKKSGKP 307 (410)
T ss_dssp --------------------------GGG---------------------------------------CCSCC-------
T ss_pred --------------------------hhh---------------------------------------hccccccccCCC
Confidence 000 000001122346
Q ss_pred CCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEE
Q 048801 557 NRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDG 636 (1715)
Q Consensus 557 G~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~sv 636 (1715)
|.+|++|+.|+.|+|||+.++.++..+.+|...|++++|+| ++.+|++|+.||+|+|||+.+++++..+.+|...|+++
T Consensus 308 g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l 386 (410)
T 1vyh_C 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 386 (410)
T ss_dssp CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEE
Confidence 88999999999999999999999999999999999999999 77888999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEC
Q 048801 637 KFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 637 afSPDG~~LAsgs~DG~I~IWdl 659 (1715)
+|+|++.+||+|+.||.|+||++
T Consensus 387 ~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 387 DFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EECSSSSCEEEEETTSEEEEEC-
T ss_pred EEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999999999999999999986
No 7
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.1e-38 Score=375.72 Aligned_cols=292 Identities=22% Similarity=0.368 Sum_probs=259.1
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
++...+|.||.+.|++++|+|+|++|++|+.||+|+|||+.++..+..+..|...|.+++|+|++++|++|+.|+.|+||
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCC----ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCC
Q 048801 313 RLPDGL----PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNG 388 (1715)
Q Consensus 313 Dl~tg~----~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~ 388 (1715)
++.++. ....+.+|.+.|.++.|++++ .|++++.|++|++||+.+++.+..+
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~l~s~s~d~~i~~wd~~~~~~~~~~-------------------- 180 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN----QIVTSSGDTTCALWDIETGQQTTTF-------------------- 180 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETT----EEEEEETTSCEEEEETTTTEEEEEE--------------------
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCC----cEEEEECCCcEEEEECCCCcEEEEE--------------------
Confidence 998763 456788999999999999886 6899999999999999887654433
Q ss_pred CCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccc
Q 048801 389 PSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMS 468 (1715)
Q Consensus 389 ~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~ 468 (1715)
..|...|.+++|+|++.+|++|+.||.|++||+.++ ..+..+.+|...|.+++|+|++
T Consensus 181 -----~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~---------~~~~~~~~h~~~v~~v~~~p~~-------- 238 (340)
T 1got_B 181 -----TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG---------MCRQTFTGHESDINAICFFPNG-------- 238 (340)
T ss_dssp -----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---------SEEEEECCCSSCEEEEEECTTS--------
T ss_pred -----cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC---------eeEEEEcCCcCCEEEEEEcCCC--------
Confidence 235677999999999999999999999999999874 3467788999999999999986
Q ss_pred ccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCe
Q 048801 469 DAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGV 548 (1715)
Q Consensus 469 ~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~V 548 (1715)
..|++|+.||+|++||+++++..... ....+...|
T Consensus 239 ------------------~~l~s~s~d~~v~iwd~~~~~~~~~~---------------------------~~~~~~~~v 273 (340)
T 1got_B 239 ------------------NAFATGSDDATCRLFDLRADQELMTY---------------------------SHDNIICGI 273 (340)
T ss_dssp ------------------SEEEEEETTSCEEEEETTTTEEEEEE---------------------------CCTTCCSCE
T ss_pred ------------------CEEEEEcCCCcEEEEECCCCcEEEEE---------------------------ccCCcccce
Confidence 79999999999999999864321110 011233469
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 549 NMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 549 tslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
++++|+|+|++|++|+.|+.|+|||+.+++.+..+.+|.+.|.+++|+| ++.+|++|+.||+|+|||
T Consensus 274 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred EEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcC-CCCEEEEEcCCccEEecC
Confidence 9999999999999999999999999999999999999999999999999 788899999999999996
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.2e-38 Score=369.16 Aligned_cols=295 Identities=24% Similarity=0.359 Sum_probs=254.5
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
++..++|.+|.+.|++++|+|+|++|++|+.||.|+|||+.++..+..+.+|...|.+++|+|++++|++|+.|++|+||
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCC
Q 048801 313 RLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSS 392 (1715)
Q Consensus 313 Dl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~ 392 (1715)
|+.+++.+..+.+|...|++++|+|++. +|++|+.||+|++||+.++......
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~sgs~D~~v~lWd~~~~~~~~~~------------------------ 135 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKP---YVLSGSDDLTVKLWNWENNWALEQT------------------------ 135 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSS---EEEEEETTSCEEEEEGGGTTEEEEE------------------------
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCCC---EEEEECCCCeEEEEECCCCcchhhh------------------------
Confidence 9999999999999999999999999987 8999999999999999866322111
Q ss_pred CCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccc
Q 048801 393 NGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAF 471 (1715)
Q Consensus 393 ~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~ 471 (1715)
...|...|.+++|+| ++.+|++|+.|+.|++||+..... ......+
T Consensus 136 ~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~--------~~~~~~~------------------------- 182 (304)
T 2ynn_A 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--------NFTLTTG------------------------- 182 (304)
T ss_dssp ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC--------SEEEECC-------------------------
T ss_pred hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc--------cceeccC-------------------------
Confidence 124567799999999 678999999999999999865311 0011111
Q ss_pred cccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEE
Q 048801 472 KEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMI 551 (1715)
Q Consensus 472 ~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsl 551 (1715)
+...|..+
T Consensus 183 ------------------------------------------------------------------------~~~~v~~~ 190 (304)
T 2ynn_A 183 ------------------------------------------------------------------------QERGVNYV 190 (304)
T ss_dssp ------------------------------------------------------------------------CTTCEEEE
T ss_pred ------------------------------------------------------------------------CcCcEEEE
Confidence 12234555
Q ss_pred EeCC--CCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcc
Q 048801 552 VWSL--DNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIG 629 (1715)
Q Consensus 552 afSP--DG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h 629 (1715)
+|+| ++.+|++|+.|++|+|||+.+++++..+.+|...|.+++|+| ++.+|++|+.||+|+|||+.+++++..+..|
T Consensus 191 ~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~ 269 (304)
T 2ynn_A 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (304)
T ss_dssp EECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeeccCC
Confidence 5654 778999999999999999999999999999999999999999 7789999999999999999999999999988
Q ss_pred cceEEEEEEcCCCC--EEEEEeCCCeEEEEECCC
Q 048801 630 RFKLVDGKFSPDGT--SIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 630 ~~~V~svafSPDG~--~LAsgs~DG~I~IWdl~t 661 (1715)
...+.+++|+|+|. +||+|+. ..+.+|++..
T Consensus 270 ~~~~~~~~~~~~~~~~~~asg~~-~g~~~~~~~~ 302 (304)
T 2ynn_A 270 LERSWCIATHPTGRKNYIASGFD-NGFTVLSLGN 302 (304)
T ss_dssp SSSEEEEEECTTCGGGCEEEEET-TEEEEEECC-
T ss_pred CccEEEEEECCCCCceEEEEecC-CceEEEEecc
Confidence 89999999999886 4666655 5577888764
No 9
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-38 Score=380.83 Aligned_cols=345 Identities=14% Similarity=0.220 Sum_probs=287.9
Q ss_pred eEEEEcCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeC----CCCc------EEEEecC----------CCCCeEEEEE
Q 048801 235 NIKKLRGHRDAVYCAIFDRSGR-FVITGSDDRLVKIWSM----ETAF------CLASCRG----------HEGDITDLAV 293 (1715)
Q Consensus 235 ~l~~L~GH~~~Vt~VafSpDG~-~LaTGS~DGtIrIWDl----~tgk------~l~tL~g----------Hs~~VtsLaf 293 (1715)
.......|.+.|++++|+|+|+ +||+|+.||.|+||++ .+++ ....+.. |.+.|++++|
T Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (425)
T 1r5m_A 37 KILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAW 116 (425)
T ss_dssp EECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEE
T ss_pred hheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEE
Confidence 3334456779999999999999 9999999999999999 8888 4555554 6889999999
Q ss_pred CCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCC
Q 048801 294 SSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKP 373 (1715)
Q Consensus 294 SpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~ 373 (1715)
+|++++|++|+.||.|+||| .++..+..+.+|...|++++|+|++. +|++++.||.|++||+.+++.+..+.....
T Consensus 117 s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 192 (425)
T 1r5m_A 117 SHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGT---HIISMDVENVTILWNVISGTVMQHFELKET 192 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSS---EEEEEETTCCEEEEETTTTEEEEEECCC--
T ss_pred cCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCC---EEEEEecCCeEEEEECCCCcEEEEeecccc
Confidence 99999999999999999999 67888999999999999999999988 899999999999999998876665543221
Q ss_pred CCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeE
Q 048801 374 PDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNY 453 (1715)
Q Consensus 374 ~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~s 453 (1715)
.... ............+.+++|++++ .+++++.+|.|++||+.++. .+..+..|...|.+
T Consensus 193 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~---------~~~~~~~~~~~i~~ 252 (425)
T 1r5m_A 193 GGSS----------INAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKT---------PTGKLIGHHGPISV 252 (425)
T ss_dssp -----------------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSS---------CSEEECCCSSCEEE
T ss_pred Cccc----------eeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCc---------eeeeeccCCCceEE
Confidence 1000 0001111223348899999986 57888899999999998643 35567789999999
Q ss_pred EEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCC
Q 048801 454 VQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPP 533 (1715)
Q Consensus 454 Lafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 533 (1715)
++|+|++ ..|++++.||.|++||+.+++
T Consensus 253 ~~~~~~~--------------------------~~l~~~~~d~~i~i~d~~~~~-------------------------- 280 (425)
T 1r5m_A 253 LEFNDTN--------------------------KLLLSASDDGTLRIWHGGNGN-------------------------- 280 (425)
T ss_dssp EEEETTT--------------------------TEEEEEETTSCEEEECSSSBS--------------------------
T ss_pred EEECCCC--------------------------CEEEEEcCCCEEEEEECCCCc--------------------------
Confidence 9999986 799999999999999988643
Q ss_pred CCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 048801 534 RGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTI 613 (1715)
Q Consensus 534 ~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~ 613 (1715)
....+..|...|.+++|+|++ +|++++.|+.|++||+.+++.+..+..|...|.+++|+| ++.+|++++.||.|+
T Consensus 281 ---~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~ 355 (425)
T 1r5m_A 281 ---SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQKYAVAFMDGQVN 355 (425)
T ss_dssp ---CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred ---cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCCEEEEEECCCeEE
Confidence 233445678899999999999 999999999999999999999999999999999999999 778999999999999
Q ss_pred EEECCCCc--------------------eEEEEEcccc--eEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 614 VWDIWEGT--------------------PIRIYEIGRF--KLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 614 VWDl~tgk--------------------~l~tl~~h~~--~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
|||+.+++ ++..+..|.. .|.+++|+|+|++|++++.||.|+||++.
T Consensus 356 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 356 VYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 99999888 8899998866 99999999999999999999999999984
No 10
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.8e-38 Score=372.36 Aligned_cols=291 Identities=23% Similarity=0.343 Sum_probs=259.6
Q ss_pred eeEEEEcCCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEeCCCCcE--EEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 048801 234 QNIKKLRGHRDAVYCAIFDRS----GRFVITGSDDRLVKIWSMETAFC--LASCRGHEGDITDLAVSSNNTLVASASNDF 307 (1715)
Q Consensus 234 k~l~~L~GH~~~Vt~VafSpD----G~~LaTGS~DGtIrIWDl~tgk~--l~tL~gHs~~VtsLafSpDg~lLASGS~DG 307 (1715)
...+.+.+|.+.|++|+|+++ +.+|+||+.|++|+||++.++.. ...+.+|...|.+++|++++.+|++|+.|+
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 345677899999999999974 67999999999999999987654 457899999999999999999999999999
Q ss_pred eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 308 VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
+|+|||+.+++.+..+..|...+.+++|+|++. +|++++.||.|++|++.++.....+.
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~---~l~~g~~dg~v~i~~~~~~~~~~~~~------------------ 161 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ---YLATGTHVGKVNIFGVESGKKEYSLD------------------ 161 (321)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCCEEECTTSS---EEEEECTTSEEEEEETTTCSEEEEEE------------------
T ss_pred cEEEEECCCCCEEEEEeCCCccEEEEEECCCCC---EEEEEcCCCcEEEEEcCCCceeEEec------------------
Confidence 999999999999999999999999999999998 89999999999999998876543331
Q ss_pred CCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccc
Q 048801 388 GPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAM 467 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~ 467 (1715)
.+...|.+++|+|+|++|++|+.||.|++||+.++ ..+..+.+|...|.+++|+|++
T Consensus 162 -------~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~l~~spd~------- 218 (321)
T 3ow8_A 162 -------TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG---------KLLHTLEGHAMPIRSLTFSPDS------- 218 (321)
T ss_dssp -------CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCCCEEEECTTS-------
T ss_pred -------CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC---------cEEEEEcccCCceeEEEEcCCC-------
Confidence 23456999999999999999999999999999874 4567788999999999999986
Q ss_pred cccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCC
Q 048801 468 SDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG 547 (1715)
Q Consensus 468 ~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~ 547 (1715)
.+|++++.||.|++||++++. ....+.+|...
T Consensus 219 -------------------~~l~s~s~dg~i~iwd~~~~~-----------------------------~~~~~~~h~~~ 250 (321)
T 3ow8_A 219 -------------------QLLVTASDDGYIKIYDVQHAN-----------------------------LAGTLSGHASW 250 (321)
T ss_dssp -------------------CEEEEECTTSCEEEEETTTCC-----------------------------EEEEECCCSSC
T ss_pred -------------------CEEEEEcCCCeEEEEECCCcc-----------------------------eeEEEcCCCCc
Confidence 799999999999999998633 23345678889
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 548 VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
|.+++|+|++.+|++|+.|++|+|||+.+++++..+.+|...|.+++|+| ++.+|++++.||+|+|||+
T Consensus 251 v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 251 VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCCEEEEEC
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEeC
Confidence 99999999999999999999999999999999999999999999999999 7788999999999999996
No 11
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.2e-37 Score=431.23 Aligned_cols=471 Identities=17% Similarity=0.158 Sum_probs=335.7
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC
Q 048801 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP 315 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~ 315 (1715)
...+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++.+..+.+|.+.|++++|+|++++||+|+.||+|+|||+.
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCC
Q 048801 316 DGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL 395 (1715)
Q Consensus 316 tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~ 395 (1715)
+++.+..+.+|...|++++|+|++... ++++++.||.|++||+.++.....+ ..
T Consensus 688 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~sg~~d~~v~vwd~~~~~~~~~~-------------------------~~ 741 (1249)
T 3sfz_A 688 TGKLVHTYDEHSEQVNCCHFTNKSNHL-LLATGSNDFFLKLWDLNQKECRNTM-------------------------FG 741 (1249)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSCC-EEEEEETTSCEEEEETTSSSEEEEE-------------------------CC
T ss_pred CCceEEEEcCCCCcEEEEEEecCCCce-EEEEEeCCCeEEEEECCCcchhhee-------------------------cC
Confidence 999999999999999999999965433 7999999999999999987754433 23
Q ss_pred CCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCce----eeeeecCCCCCeeEEEEccCccccccccc---
Q 048801 396 QSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIH----ELDVLSGHENDVNYVQFSGCAVASRSAMS--- 468 (1715)
Q Consensus 396 h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~----~l~~l~gH~~~V~sLafspdg~as~~~~~--- 468 (1715)
|...|++++|+|+|.+|++|+.||.|++||+.++.......... .......+...|.+++|+|++........
T Consensus 742 h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v 821 (1249)
T 3sfz_A 742 HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKV 821 (1249)
T ss_dssp CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEE
T ss_pred CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcE
Confidence 56779999999999999999999999999997653210000000 00000011123344444443311100000
Q ss_pred ccccccc-----------ccccc--CCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCC
Q 048801 469 DAFKEEN-----------VPKFK--NSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRG 535 (1715)
Q Consensus 469 ~~~~~~~-----------~~~~~--~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g 535 (1715)
..+.... ..... .....+..+++++.||.|++|++.++.
T Consensus 822 ~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~---------------------------- 873 (1249)
T 3sfz_A 822 LLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL---------------------------- 873 (1249)
T ss_dssp EEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE----------------------------
T ss_pred EEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc----------------------------
Confidence 0000000 00000 000124789999999999999998643
Q ss_pred CCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCc-----------------------------eEEEE---
Q 048801 536 GPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS-----------------------------LVHSL--- 583 (1715)
Q Consensus 536 ~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~-----------------------------~l~tL--- 583 (1715)
....+.+|...|++++|+|+|.+|++++.|+.|++|++.++. .+..+
T Consensus 874 -~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1249)
T 3sfz_A 874 -KVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGK 952 (1249)
T ss_dssp -EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEES
T ss_pred -eeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecC
Confidence 233456788899999999999999999999999999975311 00111
Q ss_pred -----ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 584 -----TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 584 -----~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
..+...+.+++|+| ++.++++|+.||.|++|++.+++.+..+.+|...|.+++|+|+|++|++++.||.|++|+
T Consensus 953 ~~~~~~~~~~~i~~~~~sp-~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 953 TGQIDYLPEAQVSCCCLSP-HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp SCCEEEECCSCEEEEEECT-TSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEE
T ss_pred cceEEEcccCcEEEEEEcC-CCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 12356789999999 778999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccc-----ccccceeecCCCccEEEcCCCCeeecccccccCcCCCCCcccCCCCCCCCCccchhhhhhcccccce
Q 048801 659 TGQGESQK-----DAKYDQFFLGDYRPLIRDSLGNVLDQETQLVPHRRNIQDPLCDSSMIPYEEPYQSMYQQRRLGALGI 733 (1715)
Q Consensus 659 l~tGe~~k-----~~~~~~~fs~D~r~L~~d~~g~vld~~tq~~p~~~~~~~~lvD~~~~p~p~~~q~~~q~r~~g~~~l 733 (1715)
+.+++... .......|++++..++...+|.+.-.+.... .....+ ....-....+
T Consensus 1032 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~---~~~~~~-----------------~~~~~~v~~~ 1091 (1249)
T 3sfz_A 1032 WQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITG---RIERDF-----------------TCHQGTVLSC 1091 (1249)
T ss_dssp TTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTT---CCCEEE-----------------ECCSSCCCCE
T ss_pred CCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCC---ceeEEE-----------------cccCCcEEEE
Confidence 99987653 2234456788877666666665422111100 000000 0001124568
Q ss_pred eecCCCCeEEeeeccccCccCCCCCchhhhcccccCCCccccCcccCccc
Q 048801 734 EWRPSSIKLAIGLDFSLGQDYAMPPLEDLERMMEPVPEFIDPVYWEPENE 783 (1715)
Q Consensus 734 ~~sPdg~~lAvg~~~~l~~~~~~~P~~d~~~~i~~~p~~i~~~~~~p~~~ 783 (1715)
+|+|++..++++.....-.-+.+... ..-..+......|..+.|-|+..
T Consensus 1092 ~~s~d~~~l~s~s~d~~v~iwd~~~~-~~~~~l~~h~~~v~~~~~s~dg~ 1140 (1249)
T 3sfz_A 1092 AISSDATKFSSTSADKTAKIWSFDLL-SPLHELKGHNGCVRCSAFSLDGI 1140 (1249)
T ss_dssp EECSSSSSCEEECCSSCCCEECSSSS-SCSBCCCCCSSCEEEEEECSSSS
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCc-ceeeeeccCCCcEEEEEECCCCC
Confidence 99999999999854322111111110 00011233445566777777754
No 12
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.1e-38 Score=381.82 Aligned_cols=311 Identities=21% Similarity=0.342 Sum_probs=264.6
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEE
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRV 311 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrV 311 (1715)
...+.++|.||.+.|++++|+|+|++|+||+.||+|+|||+.+++.+..+.+|...|.+++|+|+|++||+|+.|+.|+|
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCC-------CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCC
Q 048801 312 WRLPDG-------LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384 (1715)
Q Consensus 312 WDl~tg-------~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~ 384 (1715)
|++.+. .....+.+|.+.|.++.|+|++.. .|++|+.|++|++||+.+++.+..+...
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~~------------- 199 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET--RLITGSGDQTCVLWDVTTGQRISIFGSE------------- 199 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS--CEEEECTTSCEEEECTTTCCEEEEECCC-------------
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCC--EEEEECCCCcEEEEEcCCCcEEEEeecc-------------
Confidence 999753 245667899999999999997653 6999999999999999988765443211
Q ss_pred CCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccc
Q 048801 385 SNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVAS 463 (1715)
Q Consensus 385 ~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as 463 (1715)
....|...|.+++|++ ++.+|++|+.||.|++||++.. ...+..+.+|...|.+++|+|++
T Consensus 200 -------~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~--------~~~~~~~~~h~~~v~~v~~~p~~--- 261 (380)
T 3iz6_a 200 -------FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT--------SRAVRTYHGHEGDINSVKFFPDG--- 261 (380)
T ss_dssp -------SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT--------CCCCEEECCCSSCCCEEEECTTS---
T ss_pred -------cCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC--------CcceEEECCcCCCeEEEEEecCC---
Confidence 1234677899999987 8899999999999999999742 23466788999999999999986
Q ss_pred cccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccC
Q 048801 464 RSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLP 543 (1715)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~ 543 (1715)
..|++|+.||+|++||++++.....+.. . ......
T Consensus 262 -----------------------~~l~s~s~D~~i~lwd~~~~~~~~~~~~---------~-------------~~~~~~ 296 (380)
T 3iz6_a 262 -----------------------QRFGTGSDDGTCRLFDMRTGHQLQVYNR---------E-------------PDRNDN 296 (380)
T ss_dssp -----------------------SEEEEECSSSCEEEEETTTTEEEEEECC---------C-------------CSSSCC
T ss_pred -----------------------CeEEEEcCCCeEEEEECCCCcEEEEecc---------c-------------cccccc
Confidence 7999999999999999997653221100 0 000112
Q ss_pred CCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEE----ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC
Q 048801 544 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSL----TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 544 h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL----~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t 619 (1715)
+...|++++|+|+|++|++|+.||.|+|||+.+++.+..+ .+|.+.|++++|+| ++.+|++|+.||+|+||++..
T Consensus 297 ~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 297 ELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS-DGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp SSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS-SSSEEEEECTTSCEEEEECCS
T ss_pred ccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECC-CCCEEEEeeCCCCEEEEecCC
Confidence 2345899999999999999999999999999999998888 68999999999999 788999999999999999976
Q ss_pred Cc
Q 048801 620 GT 621 (1715)
Q Consensus 620 gk 621 (1715)
++
T Consensus 376 ~~ 377 (380)
T 3iz6_a 376 HR 377 (380)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 13
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.3e-37 Score=394.05 Aligned_cols=444 Identities=12% Similarity=0.138 Sum_probs=329.3
Q ss_pred CCCCCceeeeeeccccCcccccCCCCcccccccccccCccccccc----eeEEEEcCCCCC-eEEEEEcC--CCCEEEEE
Q 048801 189 HMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKM----QNIKKLRGHRDA-VYCAIFDR--SGRFVITG 261 (1715)
Q Consensus 189 ~~~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----k~l~~L~GH~~~-Vt~VafSp--DG~~LaTG 261 (1715)
..+...|..+.+.+.|..++.... . ....+.+.+. +.+..|.+|.+. |++++|+| ++++||+|
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~~-~---------~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~ 84 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPCG-K---------SAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSG 84 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEET-T---------EEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEE
T ss_pred CCccCceeEEEECCCCCEEEEecC-C---------eEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEe
Confidence 345677888999888865554431 1 1122333445 788899999999 99999999 99999999
Q ss_pred eCCCcEEEEeCCCC--------cEEEEecCCCCCeEEEEECCCCCEEEEEeCC----CeeEEEECCCCCceEEEeCCCCC
Q 048801 262 SDDRLVKIWSMETA--------FCLASCRGHEGDITDLAVSSNNTLVASASND----FVIRVWRLPDGLPISVLRGHTGA 329 (1715)
Q Consensus 262 S~DGtIrIWDl~tg--------k~l~tL~gHs~~VtsLafSpDg~lLASGS~D----GtIrVWDl~tg~~l~~L~gH~~~ 329 (1715)
+.||.|+|||+.++ ..+..+.+|...|.+++|+|++++|++++.+ +.|++|| ++..+..+.+|...
T Consensus 85 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~ 162 (615)
T 1pgu_A 85 DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQR 162 (615)
T ss_dssp ETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSC
T ss_pred cCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCcc
Confidence 99999999999755 7788899999999999999999999999987 6888887 67888999999999
Q ss_pred eEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCc---ceeEEEEc
Q 048801 330 VTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH---QILCCAYN 406 (1715)
Q Consensus 330 VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~---~VtslafS 406 (1715)
|++++|+|++.. .|++++.||.|++||+.+++.+..+. .|.. .|.+++|+
T Consensus 163 v~~~~~~~~~~~--~l~~~~~d~~v~vwd~~~~~~~~~~~-------------------------~~~~~~~~v~~~~~~ 215 (615)
T 1pgu_A 163 INACHLKQSRPM--RSMTVGDDGSVVFYQGPPFKFSASDR-------------------------THHKQGSFVRDVEFS 215 (615)
T ss_dssp EEEEEECSSSSC--EEEEEETTTEEEEEETTTBEEEEEEC-------------------------SSSCTTCCEEEEEEC
T ss_pred EEEEEECCCCCc--EEEEEeCCCcEEEEeCCCcceeeeec-------------------------ccCCCCceEEEEEEC
Confidence 999999999863 69999999999999998776544432 2344 79999999
Q ss_pred cC-CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee-c---CCCCCeeEEEEccCcccccc----ccccccccccc-
Q 048801 407 AN-GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL-S---GHENDVNYVQFSGCAVASRS----AMSDAFKEENV- 476 (1715)
Q Consensus 407 pd-G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l-~---gH~~~V~sLafspdg~as~~----~~~~~~~~~~~- 476 (1715)
|+ +.+|++|+.||.|++||+.+++ .+..+ . .|...|.+++|+ ++..... +....+.....
T Consensus 216 ~~~~~~l~~~~~dg~i~vwd~~~~~---------~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~ 285 (615)
T 1pgu_A 216 PDSGEFVITVGSDRKISCFDGKSGE---------FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSK 285 (615)
T ss_dssp STTCCEEEEEETTCCEEEEETTTCC---------EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCC---------EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCc
Confidence 99 9999999999999999998753 34555 5 899999999998 5421111 11111111100
Q ss_pred --------------ccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccc-ccccccCCCC---------------
Q 048801 477 --------------PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWT-RAYHLKVPPP--------------- 526 (1715)
Q Consensus 477 --------------~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~-~~~~l~~~~~--------------- 526 (1715)
......+.....+++++.||.|++||+.+++....+.... ....+.. +.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 286 CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSS 364 (615)
T ss_dssp EEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTT
T ss_pred EEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEc
Confidence 0001112256788888888999999887654332221111 1111111 00
Q ss_pred -------------------CCCCC-CCC-------------------------------------------CCCcccccC
Q 048801 527 -------------------PLPPQ-PPR-------------------------------------------GGPRQRLLP 543 (1715)
Q Consensus 527 -------------------~~~~~-~~~-------------------------------------------g~~~~~l~~ 543 (1715)
..... ... .........
T Consensus 365 ~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (615)
T 1pgu_A 365 SSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 444 (615)
T ss_dssp TEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred hhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc
Confidence 00000 000 000000112
Q ss_pred CCCCeeEEEeCCCCCEEEEEec-CCeEEEEECCCCceE-EEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 048801 544 TPRGVNMIVWSLDNRFVLAAIM-DCRICVWNAVDGSLV-HSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 544 h~~~VtslafSPDG~~LaTgs~-DGtI~IWDl~sg~~l-~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk 621 (1715)
+...+.+++|+ +.+|++++. |+.|++||+.+++.. ..+.+|...|++++|+| ++.+|++|+.||.|+|||+.+++
T Consensus 445 ~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~ 521 (615)
T 1pgu_A 445 LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSRE 521 (615)
T ss_dssp CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTE
T ss_pred cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECC-CCCEEEEcCCCCeEEEeeCCCCc
Confidence 44556677777 778888888 999999999887766 66778999999999999 78899999999999999999999
Q ss_pred eEEEEEc-ccceEEEEEEcC----------CCCEEEEEeCCCeEEEEECCCC-cccc------ccccceeecCCCccEEE
Q 048801 622 PIRIYEI-GRFKLVDGKFSP----------DGTSIVLSDDVGQIYLLNTGQG-ESQK------DAKYDQFFLGDYRPLIR 683 (1715)
Q Consensus 622 ~l~tl~~-h~~~V~svafSP----------DG~~LAsgs~DG~I~IWdl~tG-e~~k------~~~~~~~fs~D~r~L~~ 683 (1715)
++..+.+ |...|.+++|+| +|++||+++.||.|+||++.++ +... .......|++|++ |+.
T Consensus 522 ~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s 600 (615)
T 1pgu_A 522 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVS 600 (615)
T ss_dssp EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEE
T ss_pred ceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEE
Confidence 9999887 889999999999 9999999999999999999987 4432 2345568999999 776
Q ss_pred cCC
Q 048801 684 DSL 686 (1715)
Q Consensus 684 d~~ 686 (1715)
...
T Consensus 601 ~~~ 603 (615)
T 1pgu_A 601 SGA 603 (615)
T ss_dssp EET
T ss_pred ecC
Confidence 543
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.1e-37 Score=366.58 Aligned_cols=292 Identities=18% Similarity=0.236 Sum_probs=258.2
Q ss_pred CcEEEEecCCCCCeEEEEECCC----CCEEEEEeCCCeeEEEECCCCCc--eEEEeCCCCCeEEEEecCCCCcceEEEEe
Q 048801 275 AFCLASCRGHEGDITDLAVSSN----NTLVASASNDFVIRVWRLPDGLP--ISVLRGHTGAVTAIAFSPRPSAIYQLLSS 348 (1715)
Q Consensus 275 gk~l~tL~gHs~~VtsLafSpD----g~lLASGS~DGtIrVWDl~tg~~--l~~L~gH~~~VtsLafSPdg~~~~~LaSg 348 (1715)
+.....+.+|.+.|++++|+++ +.+||+|+.|++|+||++.++.. ...+.+|...|.+++|++++. +++++
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~---~l~s~ 98 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLP---IAASS 98 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSS---EEEEE
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCC---EEEEE
Confidence 3445667899999999999984 67999999999999999987653 456889999999999999987 89999
Q ss_pred cCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCC
Q 048801 349 SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 349 S~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t 428 (1715)
+.|++|++||+.+++.+..+.. +...+.+++|+|++++|++|+.+|.|++|++.+
T Consensus 99 s~D~~i~lWd~~~~~~~~~~~~-------------------------~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~ 153 (321)
T 3ow8_A 99 SLDAHIRLWDLENGKQIKSIDA-------------------------GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 153 (321)
T ss_dssp ETTSEEEEEETTTTEEEEEEEC-------------------------CTTCCCCEEECTTSSEEEEECTTSEEEEEETTT
T ss_pred eCCCcEEEEECCCCCEEEEEeC-------------------------CCccEEEEEECCCCCEEEEEcCCCcEEEEEcCC
Confidence 9999999999998876554421 234578899999999999999999999999987
Q ss_pred CCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCcc
Q 048801 429 SSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS 508 (1715)
Q Consensus 429 ~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~ 508 (1715)
+. ....+..|...|.+++|+|++ .+|++|+.||.|++||+.+++
T Consensus 154 ~~---------~~~~~~~~~~~v~~~~~spdg--------------------------~~lasg~~dg~i~iwd~~~~~- 197 (321)
T 3ow8_A 154 GK---------KEYSLDTRGKFILSIAYSPDG--------------------------KYLASGAIDGIINIFDIATGK- 197 (321)
T ss_dssp CS---------EEEEEECSSSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEETTTTE-
T ss_pred Cc---------eeEEecCCCceEEEEEECCCC--------------------------CEEEEEcCCCeEEEEECCCCc-
Confidence 53 355677888899999999987 799999999999999998643
Q ss_pred CcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCC
Q 048801 509 HGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSA 588 (1715)
Q Consensus 509 ~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~ 588 (1715)
.+..+.+|...|.+++|+|++++|++|+.|+.|+|||+.+++++..+.+|..
T Consensus 198 ----------------------------~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~ 249 (321)
T 3ow8_A 198 ----------------------------LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 249 (321)
T ss_dssp ----------------------------EEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS
T ss_pred ----------------------------EEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC
Confidence 2334556788999999999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 589 SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 589 ~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
.|.+++|+| ++.+|++|+.||+|+|||+.+++++..+..|...|.+++|+|+|.+|++++.||.|+|||+
T Consensus 250 ~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 250 WVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred ceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 999999999 7788999999999999999999999999999999999999999999999999999999996
No 15
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.2e-37 Score=368.69 Aligned_cols=323 Identities=19% Similarity=0.302 Sum_probs=256.1
Q ss_pred cceeEEEEcCCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEE---EecCCCCCeEEEEECCCCCEEEEEeCCC
Q 048801 232 KMQNIKKLRGHRD-AVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLA---SCRGHEGDITDLAVSSNNTLVASASNDF 307 (1715)
Q Consensus 232 ~~k~l~~L~GH~~-~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~---tL~gHs~~VtsLafSpDg~lLASGS~DG 307 (1715)
.++++.+|.+|.+ .|++++|+|+|++||+|+.|++|+||++.++.... ...+|...|++++|+|++++||+|+.|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 4567889999998 99999999999999999999999999998876432 2368999999999999999999999999
Q ss_pred eeEEEECCCC--CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCC
Q 048801 308 VIRVWRLPDG--LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 308 tIrVWDl~tg--~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
+|+||++.++ .++..+.+|...|++++|+|++. +|++++.|++|++||+..+.....+.
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~---~l~s~s~D~~v~iwd~~~~~~~~~~~---------------- 144 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN---LLATCSRDKSVWVWEVDEEDEYECVS---------------- 144 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS---EEEEEETTSCEEEEEECTTSCEEEEE----------------
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC---EEEEEECCCeEEEEECCCCCCeEEEE----------------
Confidence 9999999876 45778899999999999999987 89999999999999998654322111
Q ss_pred CCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccc
Q 048801 386 NNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~ 465 (1715)
....|...|.+++|+|++.+|++|+.|+.|++|++..+. ......+.+|...|.+++|+|++
T Consensus 145 ------~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~-------~~~~~~~~~h~~~v~~l~~sp~g----- 206 (345)
T 3fm0_A 145 ------VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD-------WVCCATLEGHESTVWSLAFDPSG----- 206 (345)
T ss_dssp ------EECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTE-------EEEEEEECCCSSCEEEEEECTTS-----
T ss_pred ------EecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCC-------EEEEEEecCCCCceEEEEECCCC-----
Confidence 122456779999999999999999999999999987542 23456788999999999999986
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccC-C
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLP-T 544 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~-h 544 (1715)
.+|++++.||+|+||+.........+. . .........+..+.+ |
T Consensus 207 ---------------------~~l~s~s~D~~v~iW~~~~~~~~~~~~---------~-----~~~~~~~~~~~~~~~~h 251 (345)
T 3fm0_A 207 ---------------------QRLASCSDDRTVRIWRQYLPGNEQGVA---------C-----SGSDPSWKCICTLSGFH 251 (345)
T ss_dssp ---------------------SEEEEEETTSCEEEEEEECTTCTTCCC---------C-----C---CEEEEEEEECSSC
T ss_pred ---------------------CEEEEEeCCCeEEEeccccCCCCccce---------e-----eccCCccceeEEecCCC
Confidence 799999999999999975321100000 0 000000011122233 7
Q ss_pred CCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCc---------eEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEE
Q 048801 545 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS---------LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVW 615 (1715)
Q Consensus 545 ~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~---------~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VW 615 (1715)
...|.+++|+|++..|++++.|+.|++|+...+. ....+.+|...|++|+|+|+++.+|++|+.||+|+||
T Consensus 252 ~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W 331 (345)
T 3fm0_A 252 SRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331 (345)
T ss_dssp SSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred CCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEE
Confidence 7889999999999999999999999999987542 1223358999999999999666799999999999999
Q ss_pred ECCCCceEEEE
Q 048801 616 DIWEGTPIRIY 626 (1715)
Q Consensus 616 Dl~tgk~l~tl 626 (1715)
++.+++.+..+
T Consensus 332 ~~~~~~~~~~~ 342 (345)
T 3fm0_A 332 KYQRPEGLHHH 342 (345)
T ss_dssp EECC-------
T ss_pred EecCCCCcccc
Confidence 99888766544
No 16
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-36 Score=403.81 Aligned_cols=362 Identities=20% Similarity=0.276 Sum_probs=302.7
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
++..+.|.+|.+.|++++|+|+|++||+|+.||.|+|||+.++..+..+.+|.+.|++++|+|++++||+|+.||.|+||
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCC
Q 048801 313 RLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSS 392 (1715)
Q Consensus 313 Dl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~ 392 (1715)
|+.+++.+..+.+|.+.|++++|+|++. +|++++.||.|++||+.++......
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~------------------------ 135 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKP---YVLSGSDDLTVKLWNWENNWALEQT------------------------ 135 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSS---EEEEEETTSEEEEEEGGGTSEEEEE------------------------
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeCCCC---EEEEEcCCCEEEEEECCCCceEEEE------------------------
Confidence 9999999999999999999999999998 8999999999999999876322111
Q ss_pred CCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee-cCCCCCeeEEEEcc--Cccccccccc
Q 048801 393 NGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL-SGHENDVNYVQFSG--CAVASRSAMS 468 (1715)
Q Consensus 393 ~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l-~gH~~~V~sLafsp--dg~as~~~~~ 468 (1715)
...|...|.+++|+| ++..|++++.||.|++||+.++.. ...+ ..+...|.+++|+| ++
T Consensus 136 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~-------- 198 (814)
T 3mkq_A 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---------NFTLTTGQERGVNYVDYYPLPDK-------- 198 (814)
T ss_dssp EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC---------SEEEECCCTTCCCEEEECCSTTC--------
T ss_pred EcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc---------eeEEecCCCCCEEEEEEEECCCC--------
Confidence 123566799999999 889999999999999999976432 2233 34458999999998 54
Q ss_pred ccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCe
Q 048801 469 DAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGV 548 (1715)
Q Consensus 469 ~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~V 548 (1715)
..|++++.||.|++||+.++. ....+..|...|
T Consensus 199 ------------------~~l~~~~~dg~i~~~d~~~~~-----------------------------~~~~~~~~~~~v 231 (814)
T 3mkq_A 199 ------------------PYMITASDDLTIKIWDYQTKS-----------------------------CVATLEGHMSNV 231 (814)
T ss_dssp ------------------CEEEEECTTSEEEEEETTTTE-----------------------------EEEEEECCSSCE
T ss_pred ------------------CEEEEEeCCCEEEEEECCCCc-----------------------------EEEEEcCCCCCE
Confidence 799999999999999997643 223445678889
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEE--
Q 048801 549 NMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY-- 626 (1715)
Q Consensus 549 tslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl-- 626 (1715)
.+++|+|++.+|++++.||.|++||+.+++.+..+..|...|.+++|+|++..++++++.++.+.+|++..+.....+
T Consensus 232 ~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (814)
T 3mkq_A 232 SFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDP 311 (814)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECS
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECC
Confidence 999999999999999999999999999999999999999999999999965555445556777999987654322221
Q ss_pred -----------------------------------------EcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 627 -----------------------------------------EIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 627 -----------------------------------------~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
..+...+.+++|+|+|++|++++ +|.+.+|++......
T Consensus 312 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~ 390 (814)
T 3mkq_A 312 VGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNK 390 (814)
T ss_dssp SSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEE
T ss_pred CCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccccc
Confidence 11233467899999999999998 899999998654332
Q ss_pred c-ccccceeecCCCccEEEcCC
Q 048801 666 K-DAKYDQFFLGDYRPLIRDSL 686 (1715)
Q Consensus 666 k-~~~~~~~fs~D~r~L~~d~~ 686 (1715)
. .......|+||++.|+....
T Consensus 391 ~~~~i~~~~~spdg~~la~~~~ 412 (814)
T 3mkq_A 391 AFGKCQDFVWGPDSNSYALIDE 412 (814)
T ss_dssp EEEECSEEEECTTSSCEEEECT
T ss_pred CCCceEEEEEeCCCCeEEEEeC
Confidence 2 33456789999998887544
No 17
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=9e-37 Score=368.45 Aligned_cols=292 Identities=25% Similarity=0.379 Sum_probs=257.7
Q ss_pred eeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 234 k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
+...+|.||.+.|+|++|+|++++||||+.||+|+|||..+++....+..|...|.+++|+|+|.+||+|+.|+.|++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC------CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 314 LPDG------LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 314 l~tg------~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
+... .....+.+|...|.+++|+|++. .|++++.|++|++||+.+++.+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~t~s~D~~v~lwd~~~~~~~~~~------------------- 192 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM---QILTASGDGTCALWDVESGQLLQSF------------------- 192 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS---EEEEEETTSEEEEEETTTCCEEEEE-------------------
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCC---EEEEEeCCCcEEEEeCCCCeEEEEE-------------------
Confidence 8654 34677888999999999999987 8999999999999999988765443
Q ss_pred CCCCCCCCCCcceeEEEEcc--CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccc
Q 048801 388 GPSSSNGLQSHQILCCAYNA--NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafSp--dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~ 465 (1715)
..|...|.+++|+| +|.+|++|+.||.|++||+.++ ..+..+.+|...|++++|+|++
T Consensus 193 ------~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~---------~~~~~~~~h~~~v~~v~~~p~~----- 252 (354)
T 2pbi_B 193 ------HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG---------QCVQAFETHESDVNSVRYYPSG----- 252 (354)
T ss_dssp ------ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTS-----
T ss_pred ------cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC---------cEEEEecCCCCCeEEEEEeCCC-----
Confidence 23566799999987 5789999999999999999875 3467788999999999999986
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~ 545 (1715)
..|++|+.||+|++||+++....... ....+.
T Consensus 253 ---------------------~~l~s~s~D~~v~lwd~~~~~~~~~~---------------------------~~~~~~ 284 (354)
T 2pbi_B 253 ---------------------DAFASGSDDATCRLYDLRADREVAIY---------------------------SKESII 284 (354)
T ss_dssp ---------------------SEEEEEETTSCEEEEETTTTEEEEEE---------------------------CCTTCC
T ss_pred ---------------------CEEEEEeCCCeEEEEECCCCcEEEEE---------------------------cCCCcc
Confidence 79999999999999999864321110 001123
Q ss_pred CCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 546 RGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
..+.+++|+|+|.+|++|+.|+.|+|||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.||+|+||+
T Consensus 285 ~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 285 FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEC
T ss_pred cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECC-CCCEEEEEcCCCCEEecC
Confidence 4688999999999999999999999999999999999999999999999999 778999999999999996
No 18
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.5e-37 Score=372.67 Aligned_cols=323 Identities=15% Similarity=0.177 Sum_probs=242.1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC------CCeeEEEECCCCCc--
Q 048801 248 CAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN------DFVIRVWRLPDGLP-- 319 (1715)
Q Consensus 248 ~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~------DGtIrVWDl~tg~~-- 319 (1715)
.+.+.+++.++.+ +.+.....|++... ...+|...|++++|||||++||+|+. |+.|++|+..++.+
T Consensus 10 g~d~g~~~~~~~~-~g~~~~~~w~~p~~----~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~ 84 (357)
T 4g56_B 10 GVDLGTENLYFQS-NGSSKGSAWGRPVT----APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE 84 (357)
T ss_dssp -----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG
T ss_pred CCCCCccceEEec-CCCccccccCCCCC----CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce
Confidence 3445555545444 45678899987543 33579999999999999999999997 78899999887653
Q ss_pred --eEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCC
Q 048801 320 --ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQS 397 (1715)
Q Consensus 320 --l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~ 397 (1715)
.....+|...|++++|+|++ .+++++.||+|+|||+.+++...... .....|.
T Consensus 85 ~~~~~~~~~~~~V~~~~~s~d~----~~l~~s~dg~v~lWd~~~~~~~~~~~---------------------~~~~~h~ 139 (357)
T 4g56_B 85 SLCTAGVQTEAGVTDVAWVSEK----GILVASDSGAVELWEILEKESLLVNK---------------------FAKYEHD 139 (357)
T ss_dssp GGCSEEEECSSCEEEEEEETTT----EEEEEETTSCEEEC--------CCCC---------------------EEECCCS
T ss_pred eEecccCCCCCCEEEEEEcCCC----CEEEEECCCEEEEeeccccceeEEEe---------------------eccCCCC
Confidence 33445689999999999987 57788899999999998776432211 1123467
Q ss_pred cceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccc
Q 048801 398 HQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVP 477 (1715)
Q Consensus 398 ~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~ 477 (1715)
..|++++|+|+|++|++|+.||.|+|||+.++ ..+..+.+|...|++++|++++
T Consensus 140 ~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~---------~~~~~~~~h~~~v~~v~~s~~~----------------- 193 (357)
T 4g56_B 140 DIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK---------AVLKSYNAHSSEVNCVAACPGK----------------- 193 (357)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEECTTC-----------------
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEECCCC---------cEEEEEcCCCCCEEEEEEccCC-----------------
Confidence 78999999999999999999999999999874 4577889999999999999876
Q ss_pred cccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC-
Q 048801 478 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD- 556 (1715)
Q Consensus 478 ~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD- 556 (1715)
...+++++.||+|++||+++++.... .....+...+.+++|+|+
T Consensus 194 --------~~~~~s~~~dg~v~~wd~~~~~~~~~---------------------------~~~~~~~~~v~~v~~sp~~ 238 (357)
T 4g56_B 194 --------DTIFLSCGEDGRILLWDTRKPKPATR---------------------------IDFCASDTIPTSVTWHPEK 238 (357)
T ss_dssp --------SSCEEEEETTSCEEECCTTSSSCBCB---------------------------CCCTTCCSCEEEEEECTTS
T ss_pred --------CceeeeeccCCceEEEECCCCceeee---------------------------eeeccccccccchhhhhcc
Confidence 35899999999999999987542211 122345667999999997
Q ss_pred CCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEE
Q 048801 557 NRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDG 636 (1715)
Q Consensus 557 G~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~sv 636 (1715)
+.+|++|+.|+.|+|||+.+++++..+.+|...|++++|+|+++++|++|+.||+|+|||+.+++++..+ +|...|.++
T Consensus 239 ~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~v 317 (357)
T 4g56_B 239 DDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGV 317 (357)
T ss_dssp TTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEE
T ss_pred cceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEE
Confidence 4688999999999999999999999999999999999999977789999999999999999999888766 589999999
Q ss_pred EEcC-CCCEEEEEeCCCeEEEEECCCC
Q 048801 637 KFSP-DGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 637 afSP-DG~~LAsgs~DG~I~IWdl~tG 662 (1715)
+|+| |+.+||+++.||.|++|++.+.
T Consensus 318 afsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 318 AWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 9998 8999999999999999999654
No 19
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-38 Score=384.66 Aligned_cols=338 Identities=19% Similarity=0.294 Sum_probs=279.6
Q ss_pred CCCeEEEEEcCCCC-EEEEE----------eCCCcEEEEeCCCCc---EEEEecCCCCCeEEEEECCCCCEEEEEeCCCe
Q 048801 243 RDAVYCAIFDRSGR-FVITG----------SDDRLVKIWSMETAF---CLASCRGHEGDITDLAVSSNNTLVASASNDFV 308 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~-~LaTG----------S~DGtIrIWDl~tgk---~l~tL~gHs~~VtsLafSpDg~lLASGS~DGt 308 (1715)
...|.+++|+|+|+ +|++| +.||.|+||++.++. .+..+ .|...|++++|+|++.+|++|+.||.
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCe
Confidence 34688999999997 99999 899999999999875 33444 58999999999999999999999999
Q ss_pred eEEEECCC----CCceEEEeCCCCCeEEEEecCC-CCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCC
Q 048801 309 IRVWRLPD----GLPISVLRGHTGAVTAIAFSPR-PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNV 383 (1715)
Q Consensus 309 IrVWDl~t----g~~l~~L~gH~~~VtsLafSPd-g~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~ 383 (1715)
|+||++.+ ...+..+.+|...|++++|+|+ +. +|++++.||.|++||+.++........
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~~~~~------------- 154 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN---VLASGGNNGEIFIWDMNKCTESPSNYT------------- 154 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT---BEEEECSSSCEEBCBTTTTSSCTTTCC-------------
T ss_pred EEEeecccccccccchhhccCCccceEEEEEcCCCCC---EEEEEcCCCeEEEEECCCCcccccccc-------------
Confidence 99999987 3578889999999999999998 55 799999999999999987652110000
Q ss_pred CCCCCCCCCCCCCCcceeEEEEccC-CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCC------CCCeeEEEE
Q 048801 384 PSNNGPSSSNGLQSHQILCCAYNAN-GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGH------ENDVNYVQF 456 (1715)
Q Consensus 384 ~~~~~~~~~~~~h~~~VtslafSpd-G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH------~~~V~sLaf 456 (1715)
.........|...|.+++|+|+ +.+|++++.||.|++||+.+++ .+..+..| ...|.+++|
T Consensus 155 ---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~ 222 (416)
T 2pm9_A 155 ---PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK---------EVIHLSYTSPNSGIKQQLSVVEW 222 (416)
T ss_dssp ---CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE---------EEEEECCCCCSSCCCCCEEEEEE
T ss_pred ---ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC---------cceEEeccccccccCCceEEEEE
Confidence 0001112346778999999999 7899999999999999998743 34444444 789999999
Q ss_pred ccCcccccccccccccccccccccCCcccCceEEEEcCCC---eEEEEecCCCccCcccccccccccccCCCCCCCCCCC
Q 048801 457 SGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG---SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPP 533 (1715)
Q Consensus 457 spdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG---sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 533 (1715)
+|++ ...|++++.|+ .|++||++++.
T Consensus 223 ~~~~-------------------------~~~l~~~~~d~~~~~i~~~d~~~~~-------------------------- 251 (416)
T 2pm9_A 223 HPKN-------------------------STRVATATGSDNDPSILIWDLRNAN-------------------------- 251 (416)
T ss_dssp CSSC-------------------------TTEEEEEECCSSSCCCCEEETTSTT--------------------------
T ss_pred CCCC-------------------------CCEEEEEECCCCCceEEEEeCCCCC--------------------------
Confidence 9985 36899999999 99999998632
Q ss_pred CCCCccccc-CCCCCeeEEEeCC-CCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCc
Q 048801 534 RGGPRQRLL-PTPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGR 611 (1715)
Q Consensus 534 ~g~~~~~l~-~h~~~VtslafSP-DG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGt 611 (1715)
.+...+. +|...|.+++|+| ++.+|++++.|+.|++||+.+++++..+.+|...|++++|+|+++.+|++++.||.
T Consensus 252 --~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 252 --TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp --SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred --CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence 1223344 6888999999999 99999999999999999999999999999999999999999955589999999999
Q ss_pred EEEEECCCCceEEEEEc-----------------------------------ccceEEEEEEcCCCCEEEEEeCCCeEEE
Q 048801 612 TIVWDIWEGTPIRIYEI-----------------------------------GRFKLVDGKFSPDGTSIVLSDDVGQIYL 656 (1715)
Q Consensus 612 I~VWDl~tgk~l~tl~~-----------------------------------h~~~V~svafSPDG~~LAsgs~DG~I~I 656 (1715)
|+||++.++........ +..++.+++|+|||++||+++.||.|+|
T Consensus 330 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~ 409 (416)
T 2pm9_A 330 IEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSI 409 (416)
T ss_dssp EEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCC
T ss_pred EEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEE
Confidence 99999987653322111 3456778999999999999999999999
Q ss_pred EECCCC
Q 048801 657 LNTGQG 662 (1715)
Q Consensus 657 Wdl~tG 662 (1715)
|++.+.
T Consensus 410 w~~~~~ 415 (416)
T 2pm9_A 410 TNPKIS 415 (416)
T ss_dssp BCCCCC
T ss_pred EEeccC
Confidence 999764
No 20
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.1e-36 Score=362.33 Aligned_cols=294 Identities=17% Similarity=0.222 Sum_probs=259.6
Q ss_pred CcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcE
Q 048801 275 AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354 (1715)
Q Consensus 275 gk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtV 354 (1715)
.+...++.+|.+.|++++|+|++++|++|+.||+|+|||+.++..+..+..|...|.+++|+|++. +|++++.|+.|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~s~~~d~~v 121 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN---YVACGGLDNIC 121 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSS---EEEEEETTCEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCC---EEEEEeCCCeE
Confidence 356788999999999999999999999999999999999999999999999999999999999988 89999999999
Q ss_pred EEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCC
Q 048801 355 RIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDS 434 (1715)
Q Consensus 355 rIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~ 434 (1715)
++|++.++...... ......|...|.+++|++++. |++++.|+.|++||+.++
T Consensus 122 ~iw~~~~~~~~~~~---------------------~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~----- 174 (340)
T 1got_B 122 SIYNLKTREGNVRV---------------------SRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETG----- 174 (340)
T ss_dssp EEEETTTCSBSCEE---------------------EEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTT-----
T ss_pred EEEECccCCCccee---------------------EEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCC-----
Confidence 99999765421111 011234567899999998875 888999999999999874
Q ss_pred CCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccc
Q 048801 435 EQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGR 514 (1715)
Q Consensus 435 ~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~ 514 (1715)
..+..+.+|...|.+++|+|++ .+|++|+.||.|++||++++.
T Consensus 175 ----~~~~~~~~h~~~v~~~~~~~~~--------------------------~~l~sg~~d~~v~~wd~~~~~------- 217 (340)
T 1got_B 175 ----QQTTTFTGHTGDVMSLSLAPDT--------------------------RLFVSGACDASAKLWDVREGM------- 217 (340)
T ss_dssp ----EEEEEECCCSSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEETTTCS-------
T ss_pred ----cEEEEEcCCCCceEEEEECCCC--------------------------CEEEEEeCCCcEEEEECCCCe-------
Confidence 3567788999999999999986 799999999999999998633
Q ss_pred ccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec--CCCCeEE
Q 048801 515 WTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG--HSASSYV 592 (1715)
Q Consensus 515 ~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g--H~~~V~s 592 (1715)
....+.+|...|++++|+|++.+|++|+.|++|+|||+.+++.+..+.. +...|.+
T Consensus 218 ----------------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~ 275 (340)
T 1got_B 218 ----------------------CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp ----------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred ----------------------eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE
Confidence 2334567888999999999999999999999999999999988887753 3457999
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 593 LDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 593 LafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
++|+| ++.+|++|+.||.|+|||+.+++.+..+.+|...|.+++|+|||.+||+|+.||.|+|||
T Consensus 276 ~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 276 VSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECC-CCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999 788999999999999999999999999999999999999999999999999999999996
No 21
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.2e-37 Score=372.95 Aligned_cols=314 Identities=16% Similarity=0.213 Sum_probs=268.2
Q ss_pred cEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEE
Q 048801 266 LVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQL 345 (1715)
Q Consensus 266 tIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~L 345 (1715)
.+.+|+..+..+..+|.+|.+.|++++|+|++++||+|+.||+|+|||+.++..+..+.+|...|.+++|+|++. +|
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~---~l 123 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ---SV 123 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSS---EE
T ss_pred cccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCC---EE
Confidence 455677777888899999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred EEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEE
Q 048801 346 LSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVW 424 (1715)
Q Consensus 346 aSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVW 424 (1715)
++|+.|+.|++|++.+...... ..........|...|.+++|+|++ ..|++|+.|+.|++|
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~------------------~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~w 185 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDG------------------NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLW 185 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCC------------------SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEE
T ss_pred EEeeCCCcEEEEECCCCccccC------------------CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEE
Confidence 9999999999999875431100 001122345677889999999974 579999999999999
Q ss_pred eCCCCCccCCCCCceeeeee-----cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEE
Q 048801 425 SACKSSVEDSEQPIHELDVL-----SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAI 499 (1715)
Q Consensus 425 Dl~t~~~~~~~~~~~~l~~l-----~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIr 499 (1715)
|+.++.. +..+ .+|...|.+++|++.. ...|++|+.||+|+
T Consensus 186 d~~~~~~---------~~~~~~~~~~~h~~~v~~~~~~~~~-------------------------~~~l~sgs~D~~v~ 231 (380)
T 3iz6_a 186 DVTTGQR---------ISIFGSEFPSGHTADVLSLSINSLN-------------------------ANMFISGSCDTTVR 231 (380)
T ss_dssp CTTTCCE---------EEEECCCSSSSCCSCEEEEEECSSS-------------------------CCEEEEEETTSCEE
T ss_pred EcCCCcE---------EEEeecccCCCCccCeEEEEeecCC-------------------------CCEEEEEECCCeEE
Confidence 9987542 2222 6799999999998732 37999999999999
Q ss_pred EEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCce
Q 048801 500 IWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL 579 (1715)
Q Consensus 500 IWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~ 579 (1715)
+||++.. ......+.+|...|++++|+|+|.+|++|+.|++|+|||+.++..
T Consensus 232 ~wd~~~~----------------------------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~ 283 (380)
T 3iz6_a 232 LWDLRIT----------------------------SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ 283 (380)
T ss_dssp EEETTTT----------------------------CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEE
T ss_pred EEECCCC----------------------------CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcE
Confidence 9998731 123445678899999999999999999999999999999999999
Q ss_pred EEEEecCCC-------CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEE----EcccceEEEEEEcCCCCEEEEE
Q 048801 580 VHSLTGHSA-------SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY----EIGRFKLVDGKFSPDGTSIVLS 648 (1715)
Q Consensus 580 l~tL~gH~~-------~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl----~~h~~~V~svafSPDG~~LAsg 648 (1715)
+..+..+.. .|++++|+| ++.+|++|+.||.|+|||+.+++.+..+ .+|...|.+++|+|||.+|++|
T Consensus 284 ~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg 362 (380)
T 3iz6_a 284 LQVYNREPDRNDNELPIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTG 362 (380)
T ss_dssp EEEECCCCSSSCCSSCSCSEEEECS-SSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEE
T ss_pred EEEecccccccccccCceEEEEECC-CCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEe
Confidence 998876533 489999999 7889999999999999999999998887 5688899999999999999999
Q ss_pred eCCCeEEEEECCCCc
Q 048801 649 DDVGQIYLLNTGQGE 663 (1715)
Q Consensus 649 s~DG~I~IWdl~tGe 663 (1715)
+.||.|+||++..++
T Consensus 363 s~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 363 SWDKNLKIWAFSGHR 377 (380)
T ss_dssp CTTSCEEEEECCSSS
T ss_pred eCCCCEEEEecCCCc
Confidence 999999999997653
No 22
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.2e-36 Score=356.82 Aligned_cols=299 Identities=19% Similarity=0.251 Sum_probs=248.9
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCC-----CcEEEEecCCCCCeEEEEECCCCCEEEEEeC
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSG-RFVITGSDDRLVKIWSMET-----AFCLASCRGHEGDITDLAVSSNNTLVASASN 305 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG-~~LaTGS~DGtIrIWDl~t-----gk~l~tL~gHs~~VtsLafSpDg~lLASGS~ 305 (1715)
.+.+..+|.||.+.|++++|+|++ ++|+||+.|++|++|++.+ +..+..+.+|...|++++|+|++.+|++|+.
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 85 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence 356778899999999999999965 8999999999999999864 3567889999999999999999999999999
Q ss_pred CCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCC
Q 048801 306 DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 306 DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
|++|+|||+.+++.+..+.+|...|.+++|+|++. +|++++.|++|++||+....
T Consensus 86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~s~s~D~~i~vwd~~~~~---------------------- 140 (319)
T 3frx_A 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS---MIISGSRDKTIKVWTIKGQC---------------------- 140 (319)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSC---EEEEEETTSCEEEEETTSCE----------------------
T ss_pred CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC---EEEEEeCCCeEEEEECCCCe----------------------
Confidence 99999999999999999999999999999999887 88999999999999864210
Q ss_pred CCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccc
Q 048801 386 NNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~ 465 (1715)
+..+.+|...|.++.|.|....
T Consensus 141 -------------------------------------------------------~~~~~~h~~~v~~~~~~~~~~~--- 162 (319)
T 3frx_A 141 -------------------------------------------------------LATLLGHNDWVSQVRVVPNEKA--- 162 (319)
T ss_dssp -------------------------------------------------------EEEECCCSSCEEEEEECCC------
T ss_pred -------------------------------------------------------EEEEeccCCcEEEEEEccCCCC---
Confidence 1122345556666666664310
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~ 545 (1715)
......|++++.|+.|++||+.+.+ ....+.+|.
T Consensus 163 -----------------~~~~~~l~s~~~d~~i~~wd~~~~~-----------------------------~~~~~~~h~ 196 (319)
T 3frx_A 163 -----------------DDDSVTIISAGNDKMVKAWNLNQFQ-----------------------------IEADFIGHN 196 (319)
T ss_dssp --------------------CCEEEEEETTSCEEEEETTTTE-----------------------------EEEEECCCC
T ss_pred -----------------CCCccEEEEEeCCCEEEEEECCcch-----------------------------hheeecCCC
Confidence 0012489999999999999997532 223456788
Q ss_pred CCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEE
Q 048801 546 RGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRI 625 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~t 625 (1715)
..|.+++|+|+|++|++|+.||.|+|||+.+++++..+..+ ..|.+++|+| ++.+|++++.+ .|++|++..+..+..
T Consensus 197 ~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp-~~~~la~~~~~-~i~v~~~~~~~~~~~ 273 (319)
T 3frx_A 197 SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSP-NRYWLAAATAT-GIKVFSLDPQYLVDD 273 (319)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECS-SSSEEEEEETT-EEEEEEETTEEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcC-CCCEEEEEcCC-CcEEEEeCcCeeeec
Confidence 99999999999999999999999999999999999999865 6799999999 67888777654 599999988887777
Q ss_pred EEc--------ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 626 YEI--------GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 626 l~~--------h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
+.. +...+.+++|+|||++|++|+.||.|+||++.++
T Consensus 274 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 274 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp ECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred cCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 642 3456899999999999999999999999998664
No 23
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.6e-35 Score=348.38 Aligned_cols=296 Identities=23% Similarity=0.427 Sum_probs=260.6
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEE
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRV 311 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrV 311 (1715)
......+|.||.+.|++++|+|+|++|++|+.||.|+||++.+++....+.+|...|.+++|+|++++|++|+.|+.|+|
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 312 WRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 312 WDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
||+.+++.+..+.+|...|.+++|+|++. +|++++.||.|++||+.+++.+..+
T Consensus 92 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~s~~~d~~i~iwd~~~~~~~~~~----------------------- 145 (312)
T 4ery_A 92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSN---LIVSGSFDESVRIWDVKTGKCLKTL----------------------- 145 (312)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSS---EEEEEETTSCEEEEETTTCCEEEEE-----------------------
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcCCCC---EEEEEeCCCcEEEEECCCCEEEEEe-----------------------
Confidence 99999999999999999999999999987 8999999999999999887654433
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccc
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAF 471 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~ 471 (1715)
..|...|.+++|+|++.+|++|+.||.|++||+.+++. +..+.
T Consensus 146 --~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---------~~~~~-------------------------- 188 (312)
T 4ery_A 146 --PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC---------LKTLI-------------------------- 188 (312)
T ss_dssp --CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------EEEEC--------------------------
T ss_pred --cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---------eeEEe--------------------------
Confidence 22456799999999999999999999999999975321 10000
Q ss_pred cccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEE
Q 048801 472 KEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMI 551 (1715)
Q Consensus 472 ~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsl 551 (1715)
..+...+.++
T Consensus 189 ----------------------------------------------------------------------~~~~~~~~~~ 198 (312)
T 4ery_A 189 ----------------------------------------------------------------------DDDNPPVSFV 198 (312)
T ss_dssp ----------------------------------------------------------------------CSSCCCEEEE
T ss_pred ----------------------------------------------------------------------ccCCCceEEE
Confidence 0112357788
Q ss_pred EeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEE--EEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcc
Q 048801 552 VWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYV--LDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIG 629 (1715)
Q Consensus 552 afSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~s--LafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h 629 (1715)
+|+|++++|++++.|+.|++||+.+++++..+.+|...+.+ ..+++.++.+|++|+.||.|++||+.+++.+..+.+|
T Consensus 199 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h 278 (312)
T 4ery_A 199 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278 (312)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc
Confidence 99999999999999999999999999999999988765433 3455557889999999999999999999999999999
Q ss_pred cceEEEEEEcCCCCEEEEEe--CCCeEEEEECC
Q 048801 630 RFKLVDGKFSPDGTSIVLSD--DVGQIYLLNTG 660 (1715)
Q Consensus 630 ~~~V~svafSPDG~~LAsgs--~DG~I~IWdl~ 660 (1715)
...|.+++|+|++.+|++++ .||.|++|+..
T Consensus 279 ~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 279 TDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999999999999986 69999999864
No 24
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.1e-36 Score=383.95 Aligned_cols=426 Identities=13% Similarity=0.096 Sum_probs=318.9
Q ss_pred CCCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCC-EEEEEeCCCcEEE
Q 048801 191 QADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGR-FVITGSDDRLVKI 269 (1715)
Q Consensus 191 ~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~-~LaTGS~DGtIrI 269 (1715)
+...|..+.|.+.+..+......... ......+...+.+..+.+|...|++++|+|++. +|++|+.||.|++
T Consensus 115 ~~~~v~~~~~s~~~~~l~~~~~~~~~-------~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~v 187 (615)
T 1pgu_A 115 LAGPISDISWDFEGRRLCVVGEGRDN-------FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVF 187 (615)
T ss_dssp CSSCEEEEEECTTSSEEEEEECCSSC-------SEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEE
T ss_pred ccccEEEEEEeCCCCEEEEeccCCCC-------ccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEE
Confidence 45668888888777544433221100 001112234567889999999999999999998 8999999999999
Q ss_pred EeCCCCcEEEEecCCCC---CeEEEEECCC-CCEEEEEeCCCeeEEEECCCCCceEEE-e---CCCCCeEEEEecCCCCc
Q 048801 270 WSMETAFCLASCRGHEG---DITDLAVSSN-NTLVASASNDFVIRVWRLPDGLPISVL-R---GHTGAVTAIAFSPRPSA 341 (1715)
Q Consensus 270 WDl~tgk~l~tL~gHs~---~VtsLafSpD-g~lLASGS~DGtIrVWDl~tg~~l~~L-~---gH~~~VtsLafSPdg~~ 341 (1715)
||+.+++.+..+.+|.. .|++++|+|+ +++|++++.||.|++||+.+++.+..+ . +|...|.+++|+ ++.
T Consensus 188 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~- 265 (615)
T 1pgu_A 188 YQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQ- 265 (615)
T ss_dssp EETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSS-
T ss_pred EeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCC-
Confidence 99999999999999999 9999999999 999999999999999999999999999 6 899999999999 776
Q ss_pred ceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeE
Q 048801 342 IYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFA 421 (1715)
Q Consensus 342 ~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~I 421 (1715)
+|++++.||.|++||+.+++.+..+.... ......+.++.|+ ++.++++|+.+|.|
T Consensus 266 --~l~~~~~d~~i~~wd~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~-~~~~l~~~~~~g~i 321 (615)
T 1pgu_A 266 --KFATVGADATIRVWDVTTSKCVQKWTLDK---------------------QQLGNQQVGVVAT-GNGRIISLSLDGTL 321 (615)
T ss_dssp --EEEEEETTSEEEEEETTTTEEEEEEECCT---------------------TCGGGCEEEEEEE-ETTEEEEEETTSCE
T ss_pred --EEEEEcCCCcEEEEECCCCcEEEEEcCCC---------------------CcccCceeEEEeC-CCCeEEEEECCCCE
Confidence 89999999999999999887665554321 1123457888886 88999999999999
Q ss_pred EEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccc--ccccccccc------ccccccCCcccCceEEEEc
Q 048801 422 RVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS--AMSDAFKEE------NVPKFKNSWFCHDNIVTCS 493 (1715)
Q Consensus 422 rVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~--~~~~~~~~~------~~~~~~~s~~~~~~LaSgS 493 (1715)
++||+.++ ..+..+.+|...|.+++| |+ ++... +....+... ........+.....|++++
T Consensus 322 ~~~d~~~~---------~~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 390 (615)
T 1pgu_A 322 NFYELGHD---------EVLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSIS 390 (615)
T ss_dssp EEEETTEE---------EEEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEE
T ss_pred EEEECCCC---------cEEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEe
Confidence 99999763 456677888889999988 76 22211 111111100 0001111122356777788
Q ss_pred CCCeEEEEecCCCccCc--------------------cccccc-------ccccccCC-------CCCCCCCCC-C----
Q 048801 494 RDGSAIIWIPRSRRSHG--------------------KVGRWT-------RAYHLKVP-------PPPLPPQPP-R---- 534 (1715)
Q Consensus 494 ~DGsIrIWDl~t~~~~~--------------------~~~~~~-------~~~~l~~~-------~~~~~~~~~-~---- 534 (1715)
.||.|++|++.++.... .+..|. ..+..... ......... .
T Consensus 391 ~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~ 470 (615)
T 1pgu_A 391 WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQ 470 (615)
T ss_dssp TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEE
T ss_pred CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEE
Confidence 88888888776432100 000000 00000000 000000000 0
Q ss_pred -----CCCc--ccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec-CCCCeEEEEEccC--------
Q 048801 535 -----GGPR--QRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG-HSASSYVLDVHPF-------- 598 (1715)
Q Consensus 535 -----g~~~--~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g-H~~~V~sLafSP~-------- 598 (1715)
.... ..+..|...|++++|+|+|++|++|+.||.|+|||+.+++++..+.+ |...|++++|+|.
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~ 550 (615)
T 1pgu_A 471 VFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEE 550 (615)
T ss_dssp EEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------C
T ss_pred EEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccc
Confidence 0001 44567888999999999999999999999999999999999999988 9999999999993
Q ss_pred -CCcEEEEEeCCCcEEEEECCCC-ceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 599 -NPRIAMSAGYDGRTIVWDIWEG-TPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 599 -dg~lLaSgs~DGtI~VWDl~tg-k~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
++.+|++|+.||.|+|||+.++ +++..+.+|...|.+++|+|||+ |++++.||.|++|++..
T Consensus 551 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 551 IEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp CSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred cCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 5688999999999999999998 88899999999999999999999 99999999999999865
No 25
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-36 Score=406.53 Aligned_cols=469 Identities=11% Similarity=0.061 Sum_probs=322.7
Q ss_pred CCCCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 048801 190 MQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKI 269 (1715)
Q Consensus 190 ~~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrI 269 (1715)
.|.+.|.+++|.+.+..++.+.....+. .|.....+.+.. ..|...|++|+|+| |++|++++.|++|+|
T Consensus 15 gh~~~V~~lafspdg~~lAsgs~Dg~I~---------lw~~~~~~~~~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~l 83 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQNLLAIATVTGEVH---------IYGQQQVEVVIK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYV 83 (902)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSEEE---------EECSTTCEEEEE-CSSCCCEEEEEEET-TTEEEEEETTCEEEE
T ss_pred CCCCCcEEEEECCCCCEEEEEeCCCEEE---------EEeCCCcEEEEE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEE
Confidence 4567799999998886665554433322 223333444444 45889999999999 889999999999999
Q ss_pred EeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCce-----------EEEeCCCCCeEEEEecCC
Q 048801 270 WSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPI-----------SVLRGHTGAVTAIAFSPR 338 (1715)
Q Consensus 270 WDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l-----------~~L~gH~~~VtsLafSPd 338 (1715)
||+.+++++..+. |.+.|++++|+|++.+|++|+.||+|++||+.++... ..+.+|.+.|++++|+|+
T Consensus 84 Wd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 84 LSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp EETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred EECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 9999999999887 7789999999999999999999999999999988653 234679999999999997
Q ss_pred CCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC
Q 048801 339 PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD 418 (1715)
Q Consensus 339 g~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D 418 (1715)
+.. .|++|+.||+| +||+.+++.+..+....+.....+. ........|...|.+++|+|+|.+||+|+.|
T Consensus 163 ~~~--~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~-------~~~~~~~~h~~~V~~v~fspdg~~lasgs~D 232 (902)
T 2oaj_A 163 DIG--TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGD-------FSEKTNEKRTPKVIQSLYHPNSLHIITIHED 232 (902)
T ss_dssp EEE--EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCST-------TCCCTTSCBCCCEEEEEECTTSSEEEEEETT
T ss_pred CCC--EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcc-------cccccccccCCCeEEEEEcCCCCEEEEEECC
Confidence 532 78999999999 9999988766554322111000000 0002233456789999999999999999999
Q ss_pred CeEEEEeCCCCCccCCCCCceeeeeec-------------CCCCCeeEEEEcc----Cc---cccccc-------ccccc
Q 048801 419 TFARVWSACKSSVEDSEQPIHELDVLS-------------GHENDVNYVQFSG----CA---VASRSA-------MSDAF 471 (1715)
Q Consensus 419 G~IrVWDl~t~~~~~~~~~~~~l~~l~-------------gH~~~V~sLafsp----dg---~as~~~-------~~~~~ 471 (1715)
|.|++||+.+++.... ..+.... .|...|.+++|++ ++ ++.... ....+
T Consensus 233 g~i~lWd~~~g~~~~~----r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~ 308 (902)
T 2oaj_A 233 NSLVFWDANSGHMIMA----RTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMI 308 (902)
T ss_dssp CCEEEEETTTCCEEEE----ECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEE
T ss_pred CeEEEEECCCCcEEEE----EeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEE
Confidence 9999999987643110 0000001 2455799999964 21 111100 00000
Q ss_pred ccc--------------------c-ccccc----------------CCc----ccCceEEEEcCCCeEEEEecCCCccCc
Q 048801 472 KEE--------------------N-VPKFK----------------NSW----FCHDNIVTCSRDGSAIIWIPRSRRSHG 510 (1715)
Q Consensus 472 ~~~--------------------~-~~~~~----------------~s~----~~~~~LaSgS~DGsIrIWDl~t~~~~~ 510 (1715)
... . ...+. ..+ .+...+++++.||.|++|++.++....
T Consensus 309 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~ 388 (902)
T 2oaj_A 309 DLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTD 388 (902)
T ss_dssp EEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEEC
T ss_pred ecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccc
Confidence 000 0 00000 001 123378888899999999997653221
Q ss_pred ccccccccccccCCCCCCC---CC-----------CCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC
Q 048801 511 KVGRWTRAYHLKVPPPPLP---PQ-----------PPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD 576 (1715)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~---~~-----------~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s 576 (1715)
........ +........ .. .........+.+|...+..++|+|++++|++|+.|++|++||+.+
T Consensus 389 ~~~~~~~~--l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~ 466 (902)
T 2oaj_A 389 KASLFPQN--LSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASH 466 (902)
T ss_dssp CGGGSCGG--GTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSC
T ss_pred ccccCCCc--ccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCC
Confidence 10000000 000000000 00 000111234567777888899999999999999999999999988
Q ss_pred CceE----EEE--e-----cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC-------------------------
Q 048801 577 GSLV----HSL--T-----GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG------------------------- 620 (1715)
Q Consensus 577 g~~l----~tL--~-----gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg------------------------- 620 (1715)
+... ..+ . +|...|++|+|+| ++++||+|+.||+|+||++.++
T Consensus 467 g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (902)
T 2oaj_A 467 GDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNN 545 (902)
T ss_dssp CTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGG
T ss_pred ccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccC
Confidence 7531 111 1 8999999999999 7889999999999999999766
Q ss_pred --------------------ceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc------------cc
Q 048801 621 --------------------TPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK------------DA 668 (1715)
Q Consensus 621 --------------------k~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k------------~~ 668 (1715)
+++..+.+|.+.|++++||||| +||+|+.||.|+|||+.++..+. ..
T Consensus 546 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~ 624 (902)
T 2oaj_A 546 TNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSAC 624 (902)
T ss_dssp SSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCC
T ss_pred CccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccc
Confidence 2477888899999999999999 99999999999999998765431 11
Q ss_pred ccceeec-----CCC---ccEEEcCCCC
Q 048801 669 KYDQFFL-----GDY---RPLIRDSLGN 688 (1715)
Q Consensus 669 ~~~~~fs-----~D~---r~L~~d~~g~ 688 (1715)
.....|+ +|+ +.|+......
T Consensus 625 V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~ 652 (902)
T 2oaj_A 625 VTCIEFVIMEYGDDGYSSILMVCGTDMG 652 (902)
T ss_dssp EEEEEEEEEECTTSSSEEEEEEEEETTS
T ss_pred eEEEEEEEEecCCCCCcceEEEEEecCC
Confidence 4556888 885 6666554433
No 26
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=7.6e-36 Score=357.70 Aligned_cols=296 Identities=23% Similarity=0.336 Sum_probs=248.1
Q ss_pred cceeEEEEcCCCCCeEEEEE-----cC-CCCEEEEEeCCCcEEEEeCCC-------CcEEEEecCCCCCeEEEEECCCCC
Q 048801 232 KMQNIKKLRGHRDAVYCAIF-----DR-SGRFVITGSDDRLVKIWSMET-------AFCLASCRGHEGDITDLAVSSNNT 298 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~Vaf-----Sp-DG~~LaTGS~DGtIrIWDl~t-------gk~l~tL~gHs~~VtsLafSpDg~ 298 (1715)
..++...|.||.+.|++++| ++ ++.+||||+.|++|+|||+.+ +.....+.+|...|++++|+|++.
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence 45677889999999999999 76 999999999999999999864 356778999999999999999999
Q ss_pred EEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCcc
Q 048801 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAIT 378 (1715)
Q Consensus 299 lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~ 378 (1715)
+|++|+.|++|+|||+.+++.+..+.+|...|++++|+|++. +|++++.|++|++||+..... ...
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~---~l~s~~~d~~i~~wd~~~~~~-~~~---------- 155 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR---QILSAGAEREIKLWNILGECK-FSS---------- 155 (343)
T ss_dssp EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTT---EEEEEETTSCEEEEESSSCEE-EEC----------
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCC---EEEEEcCCCEEEEEeccCCce-eee----------
Confidence 999999999999999999999999999999999999999998 899999999999999863221 110
Q ss_pred CccCCCCCCCCCCCCCCCCcceeEEEEccCC----------CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCC
Q 048801 379 GKSNVPSNNGPSSSNGLQSHQILCCAYNANG----------TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE 448 (1715)
Q Consensus 379 g~~~~~~~~~~~~~~~~h~~~VtslafSpdG----------~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~ 448 (1715)
.....|...|.+++|+|++ .+|++|+.||.|++||.. ......+.+|.
T Consensus 156 ------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~----------~~~~~~~~~h~ 213 (343)
T 2xzm_R 156 ------------AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN----------FQIRYTFKAHE 213 (343)
T ss_dssp ------------CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT----------TEEEEEEECCS
T ss_pred ------------ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC----------CceeEEEcCcc
Confidence 0112356779999999987 789999999999999953 23456788999
Q ss_pred CCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCC
Q 048801 449 NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPL 528 (1715)
Q Consensus 449 ~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~ 528 (1715)
..|.+++|+|++ .+|++|+.||.|++||+.....
T Consensus 214 ~~v~~~~~s~~g--------------------------~~l~sgs~dg~v~iwd~~~~~~-------------------- 247 (343)
T 2xzm_R 214 SNVNHLSISPNG--------------------------KYIATGGKDKKLLIWDILNLTY-------------------- 247 (343)
T ss_dssp SCEEEEEECTTS--------------------------SEEEEEETTCEEEEEESSCCSS--------------------
T ss_pred ccceEEEECCCC--------------------------CEEEEEcCCCeEEEEECCCCcc--------------------
Confidence 999999999987 7999999999999999853210
Q ss_pred CCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEE--EEe-----------cCCCCeEEEEE
Q 048801 529 PPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVH--SLT-----------GHSASSYVLDV 595 (1715)
Q Consensus 529 ~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~--tL~-----------gH~~~V~sLaf 595 (1715)
. .....+...|.+++|+|++.+|+++ .|+.|+||++.+++... .+. +|...|.+++|
T Consensus 248 --------~-~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 317 (343)
T 2xzm_R 248 --------P-QREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAW 317 (343)
T ss_dssp --------C-SEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEE
T ss_pred --------c-ceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEE
Confidence 0 0111234569999999999888755 57889999998876543 443 68889999999
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCCC
Q 048801 596 HPFNPRIAMSAGYDGRTIVWDIWEG 620 (1715)
Q Consensus 596 SP~dg~lLaSgs~DGtI~VWDl~tg 620 (1715)
+| ++.+|++|+.||+|++|++.++
T Consensus 318 sp-~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 318 NA-LGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CS-SSCCEEEEETTSEEEEEEEEEE
T ss_pred CC-CCCeEEEecCCceEEEEEEEcc
Confidence 99 7788899999999999998654
No 27
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.4e-36 Score=351.94 Aligned_cols=323 Identities=14% Similarity=0.143 Sum_probs=275.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC---
Q 048801 242 HRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL--- 318 (1715)
Q Consensus 242 H~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~--- 318 (1715)
|.+.|.+++|+|||++++++..++.+.+|............+|...|++++|+|++++|++++ ||.|+||++.++.
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 456899999999999999998888888877665555555568999999999999999999999 9999999998765
Q ss_pred ceEEEe--CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCC
Q 048801 319 PISVLR--GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396 (1715)
Q Consensus 319 ~l~~L~--gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h 396 (1715)
.+..+. +|...|++++|+|++. +|++++.||.|++||+.+++...... ...|
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~-----------------------~~~~ 140 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGC---TLIVGGEASTLSIWDLAAPTPRIKAE-----------------------LTSS 140 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSS---EEEEEESSSEEEEEECCCC--EEEEE-----------------------EECS
T ss_pred eeecccccCCCCcEEEEEEcCCCC---EEEEEcCCCcEEEEECCCCCcceeee-----------------------cccC
Confidence 334444 7999999999999987 89999999999999998765322111 1224
Q ss_pred CcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccc
Q 048801 397 SHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENV 476 (1715)
Q Consensus 397 ~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~ 476 (1715)
...|.+++|+|++.+|++++.||.|++||+.++ ..+..+..|...|.+++|+|++
T Consensus 141 ~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~---------------- 195 (337)
T 1gxr_A 141 APACYALAISPDSKVCFSCCSDGNIAVWDLHNQ---------TLVRQFQGHTDGASCIDISNDG---------------- 195 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEECTTS----------------
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC---------ceeeeeecccCceEEEEECCCC----------------
Confidence 566999999999999999999999999999864 3466778899999999999986
Q ss_pred ccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC
Q 048801 477 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD 556 (1715)
Q Consensus 477 ~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD 556 (1715)
..|++++.||.|++||+.+++... ...+...+.+++|+|+
T Consensus 196 ----------~~l~~~~~dg~i~~~d~~~~~~~~------------------------------~~~~~~~v~~~~~s~~ 235 (337)
T 1gxr_A 196 ----------TKLWTGGLDNTVRSWDLREGRQLQ------------------------------QHDFTSQIFSLGYCPT 235 (337)
T ss_dssp ----------SEEEEEETTSEEEEEETTTTEEEE------------------------------EEECSSCEEEEEECTT
T ss_pred ----------CEEEEEecCCcEEEEECCCCceEe------------------------------eecCCCceEEEEECCC
Confidence 799999999999999998643211 1234567999999999
Q ss_pred CCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEE
Q 048801 557 NRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDG 636 (1715)
Q Consensus 557 G~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~sv 636 (1715)
+.+|++++.++.|++||+.+++. ..+..|...|.+++|+| ++.+|++++.||.|++||+.+++.+.... +...|.++
T Consensus 236 ~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~~-~~~~v~~~ 312 (337)
T 1gxr_A 236 GEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSC 312 (337)
T ss_dssp SSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECCCCeEEEEec-CCCcEEEE
Confidence 99999999999999999988875 46788999999999999 77889999999999999999999886654 78889999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEC
Q 048801 637 KFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 637 afSPDG~~LAsgs~DG~I~IWdl 659 (1715)
+|+|+|++|++++.||.|++|++
T Consensus 313 ~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 313 DISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EECTTSCEEEEEETTSCEEEEEE
T ss_pred EECCCCCEEEEecCCCeEEEEEE
Confidence 99999999999999999999996
No 28
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.6e-35 Score=357.58 Aligned_cols=298 Identities=16% Similarity=0.227 Sum_probs=260.5
Q ss_pred cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEE
Q 048801 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVr 355 (1715)
+...++.+|.+.|++++|+|++.+||+|+.||+|+|||..++.....+..|...|.+++|+|++. +|++++.|+.++
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~---~lasg~~d~~i~ 131 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC---AIACGGLDNKCS 131 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSS---EEEEESTTSEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCC---EEEEeeCCCCEE
Confidence 56678999999999999999999999999999999999999999999999999999999999998 899999999999
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCC
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSE 435 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~ 435 (1715)
+|++......... ........|...|.+++|+|++..|++|+.|+.|++||+.++
T Consensus 132 v~~~~~~~~~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~------ 186 (354)
T 2pbi_B 132 VYPLTFDKNENMA-------------------AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG------ 186 (354)
T ss_dssp EEECCCCTTCCSG-------------------GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC------
T ss_pred EEEEecccccccc-------------------ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC------
Confidence 9998654211000 001122346788999999999999999999999999999875
Q ss_pred CCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccc
Q 048801 436 QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRW 515 (1715)
Q Consensus 436 ~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~ 515 (1715)
..+..+.+|...|.+++|+|... +..|++|+.||+|++||+++++
T Consensus 187 ---~~~~~~~~h~~~v~~~~~~~~~~------------------------g~~l~sgs~Dg~v~~wd~~~~~-------- 231 (354)
T 2pbi_B 187 ---QLLQSFHGHGADVLCLDLAPSET------------------------GNTFVSGGCDKKAMVWDMRSGQ-------- 231 (354)
T ss_dssp ---CEEEEEECCSSCEEEEEECCCSS------------------------CCEEEEEETTSCEEEEETTTCC--------
T ss_pred ---eEEEEEcCCCCCeEEEEEEeCCC------------------------CCEEEEEeCCCeEEEEECCCCc--------
Confidence 34678889999999999987530 2689999999999999998643
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecC--CCCeEEE
Q 048801 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH--SASSYVL 593 (1715)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH--~~~V~sL 593 (1715)
....+..|...|++++|+|++.+|++|+.|++|+|||+.+++.+..+..+ ...+.++
T Consensus 232 ---------------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~ 290 (354)
T 2pbi_B 232 ---------------------CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSV 290 (354)
T ss_dssp ---------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred ---------------------EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEE
Confidence 23345678889999999999999999999999999999999888777644 4578999
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 594 DVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 594 afSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
+|+| ++.+|++|+.||+|+|||+.+++.+..+.+|...|.+++|+|||++||+|+.||.|+||+
T Consensus 291 ~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 291 DFSL-SGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEeC-CCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999 788999999999999999999999999999999999999999999999999999999995
No 29
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-35 Score=363.58 Aligned_cols=305 Identities=21% Similarity=0.382 Sum_probs=250.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCC------------------CeEEEEECCCCCEEE
Q 048801 240 RGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEG------------------DITDLAVSSNNTLVA 301 (1715)
Q Consensus 240 ~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~------------------~VtsLafSpDg~lLA 301 (1715)
.+|.+.|+|++|+|||++||+|+ ++.|+||++.++..+..+.+|.. .|++++|+|+|++||
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 37999999999999999999986 68999999999999988876643 399999999999999
Q ss_pred EEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCcc
Q 048801 302 SASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKS 381 (1715)
Q Consensus 302 SGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~ 381 (1715)
+|+.|++|+|||+.+++.+..+.+|...|++++|+|++. +|++++.|++|++||+.+++....+.
T Consensus 140 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~---~l~s~s~d~~v~iwd~~~~~~~~~~~------------ 204 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD---KLVSGSGDRTVRIWDLRTGQCSLTLS------------ 204 (393)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---EEEEEETTSEEEEEETTTTEEEEEEE------------
T ss_pred EEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCC---EEEEecCCCcEEEEECCCCeeEEEEE------------
Confidence 999999999999999999999999999999999999987 89999999999999999877544332
Q ss_pred CCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCc
Q 048801 382 NVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 382 ~~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg 460 (1715)
+...+.+++|+| +|.+|++|+.||.|++||+.++....... .......+|...|.+++|+|++
T Consensus 205 --------------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~--~~~~~~~~h~~~v~~v~~~~~g 268 (393)
T 1erj_A 205 --------------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD--SENESGTGHKDSVYSVVFTRDG 268 (393)
T ss_dssp --------------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------CCCSSCEEEEEECTTS
T ss_pred --------------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeec--ccccCCCCCCCCEEEEEECCCC
Confidence 134589999999 89999999999999999998754311000 0011226799999999999986
Q ss_pred ccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc
Q 048801 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR 540 (1715)
Q Consensus 461 ~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 540 (1715)
..|++|+.||+|++||+.+....... .....+.....
T Consensus 269 --------------------------~~l~s~s~d~~v~~wd~~~~~~~~~~-----------------~~~~~~~~~~~ 305 (393)
T 1erj_A 269 --------------------------QSVVSGSLDRSVKLWNLQNANNKSDS-----------------KTPNSGTCEVT 305 (393)
T ss_dssp --------------------------SEEEEEETTSEEEEEEC--------------------------------CEEEE
T ss_pred --------------------------CEEEEEeCCCEEEEEECCCCCCcccc-----------------cCCCCCcceEE
Confidence 79999999999999999864321100 00111233455
Q ss_pred ccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccC-----CCcEEEEEeCCCcEEEE
Q 048801 541 LLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPF-----NPRIAMSAGYDGRTIVW 615 (1715)
Q Consensus 541 l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~-----dg~lLaSgs~DGtI~VW 615 (1715)
+.+|...|.+++|+|++.+|++|+.|+.|++||+.+++++..+.+|...|.+++|++. ++.+|++|+.||+|+||
T Consensus 306 ~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW 385 (393)
T 1erj_A 306 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385 (393)
T ss_dssp EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEE
T ss_pred EecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEEC
Confidence 6788999999999999999999999999999999999999999999999999999863 46799999999999999
Q ss_pred ECCC
Q 048801 616 DIWE 619 (1715)
Q Consensus 616 Dl~t 619 (1715)
++..
T Consensus 386 ~~~~ 389 (393)
T 1erj_A 386 KYKK 389 (393)
T ss_dssp EEEE
T ss_pred cccc
Confidence 9754
No 30
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.8e-36 Score=361.71 Aligned_cols=305 Identities=16% Similarity=0.161 Sum_probs=240.4
Q ss_pred EEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC-----------CCceEEEeCCCCCeEEEEe
Q 048801 267 VKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD-----------GLPISVLRGHTGAVTAIAF 335 (1715)
Q Consensus 267 IrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t-----------g~~l~~L~gH~~~VtsLaf 335 (1715)
.+.|++..... ..|...|.+++|+|||++|++++ |+++++||... .........|...|++++|
T Consensus 16 ~r~w~~~~~~~----~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 90 (344)
T 4gqb_B 16 AREWNLPPNAP----ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTW 90 (344)
T ss_dssp -------CCSC----SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEE
T ss_pred ccccCCCCCCc----ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEE
Confidence 45677654432 35778899999999999999888 67888886311 1112222346778999999
Q ss_pred cCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEe
Q 048801 336 SPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTG 415 (1715)
Q Consensus 336 SPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatG 415 (1715)
+|++ .|++|+.||+|+|||+.+++....... ....|...|++++|+|+|++|++|
T Consensus 91 s~d~----~l~~~s~dg~v~lWd~~~~~~~~~~~~---------------------~~~~H~~~V~~v~~spdg~~l~sg 145 (344)
T 4gqb_B 91 VGER----GILVASDSGAVELWELDENETLIVSKF---------------------CKYEHDDIVSTVSVLSSGTQAVSG 145 (344)
T ss_dssp ETTT----EEEEEETTSEEEEEEECTTSSCEEEEE---------------------EEECCSSCEEEEEECTTSSEEEEE
T ss_pred eCCC----eEEEEECCCEEEEEeccCCCceeEeec---------------------cccCCCCCEEEEEECCCCCEEEEE
Confidence 9985 689999999999999998875543321 112467789999999999999999
Q ss_pred cCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC
Q 048801 416 SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD 495 (1715)
Q Consensus 416 s~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D 495 (1715)
+.||.|+|||+.++ ..+..+.+|...|.+++|++++ ...|++++.|
T Consensus 146 s~d~~i~iwd~~~~---------~~~~~~~~h~~~V~~~~~~~~~-------------------------~~~l~s~s~D 191 (344)
T 4gqb_B 146 SKDICIKVWDLAQQ---------VVLSSYRAHAAQVTCVAASPHK-------------------------DSVFLSCSED 191 (344)
T ss_dssp ETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEECSSC-------------------------TTEEEEEETT
T ss_pred eCCCeEEEEECCCC---------cEEEEEcCcCCceEEEEecCCC-------------------------CCceeeeccc
Confidence 99999999999874 4578889999999999999976 3578999999
Q ss_pred CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC-CCEEEEEecCCeEEEEEC
Q 048801 496 GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD-NRFVLAAIMDCRICVWNA 574 (1715)
Q Consensus 496 GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD-G~~LaTgs~DGtI~IWDl 574 (1715)
|+|++||+++++....+ ....+...+.+++|+|+ +.+|++|+.||+|+|||+
T Consensus 192 ~~v~iwd~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~ 244 (344)
T 4gqb_B 192 NRILLWDTRCPKPASQI---------------------------GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDT 244 (344)
T ss_dssp SCEEEEETTSSSCEEEC---------------------------C----CCCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred cccccccccccceeeee---------------------------ecceeeccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence 99999999875422211 11234456899999985 568899999999999999
Q ss_pred CCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCC-EEEEEeCCCe
Q 048801 575 VDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGT-SIVLSDDVGQ 653 (1715)
Q Consensus 575 ~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~-~LAsgs~DG~ 653 (1715)
.+++++..+.+|...|++++|+|++..+|++|+.||+|+|||+.+++++ .+.+|...|.+++|+|+|. +|++++.||.
T Consensus 245 ~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~ 323 (344)
T 4gqb_B 245 KSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQ 323 (344)
T ss_dssp CC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred CCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCe
Confidence 9999999999999999999999966689999999999999999988765 4678999999999999986 5678999999
Q ss_pred EEEEECCCCc
Q 048801 654 IYLLNTGQGE 663 (1715)
Q Consensus 654 I~IWdl~tGe 663 (1715)
|++|++.+..
T Consensus 324 v~~w~v~~~~ 333 (344)
T 4gqb_B 324 VVHHVVPTEP 333 (344)
T ss_dssp EEEEECCC--
T ss_pred EEEEECCCCC
Confidence 9999997653
No 31
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-35 Score=351.84 Aligned_cols=308 Identities=21% Similarity=0.331 Sum_probs=240.2
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--cEEEEe-cC-CCCCeEEEEECCCCCEEEEEeCCC
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA--FCLASC-RG-HEGDITDLAVSSNNTLVASASNDF 307 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg--k~l~tL-~g-Hs~~VtsLafSpDg~lLASGS~DG 307 (1715)
.++++++|.+|.+.|++++|+++ +||+|+.|++|+||++.++ ..+..+ .+ |...|++++|+|++.+||+|+.|+
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 45678899999999999999987 9999999999999999875 456666 45 999999999999999999999999
Q ss_pred eeEEEECCC-------CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCC-CcceecCCCCCCCccC
Q 048801 308 VIRVWRLPD-------GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQ-YSPRIYLPKPPDAITG 379 (1715)
Q Consensus 308 tIrVWDl~t-------g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~-~l~~i~~~~~~~~i~g 379 (1715)
+|+||++.. ..++..+.+|...|++++|+|++. +|++++.|++|++||+.... ....+
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~---~las~s~D~~v~iwd~~~~~~~~~~~----------- 146 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY---YLATCSRDKSVWIWETDESGEEYECI----------- 146 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC---EEEEEETTSCEEEEECCTTCCCCEEE-----------
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC---EEEEEeCCCEEEEEeccCCCCCeEEE-----------
Confidence 999999853 346778899999999999999987 89999999999999995322 11110
Q ss_pred ccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccC
Q 048801 380 KSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGC 459 (1715)
Q Consensus 380 ~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspd 459 (1715)
.....|...|.+++|+|++.+|++|+.|+.|++|+..++. ..++..+.+|...|.+++|+|+
T Consensus 147 -----------~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~ 208 (330)
T 2hes_X 147 -----------SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD-------WECVAVLNGHEGTVWSSDFDKT 208 (330)
T ss_dssp -----------EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-------EEEEEEECCCSSCEEEEEECCS
T ss_pred -----------EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC-------eeEEEEccCCCCcEEEEEecCC
Confidence 1123467789999999999999999999999999986531 2457788999999999999997
Q ss_pred cccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcc
Q 048801 460 AVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQ 539 (1715)
Q Consensus 460 g~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~ 539 (1715)
.. ...|++++.|++|++||+.++..... ..| ....
T Consensus 209 ~~------------------------~~~l~s~s~D~~v~iw~~~~~~~~~~-~~~--------------------~~~~ 243 (330)
T 2hes_X 209 EG------------------------VFRLCSGSDDSTVRVWKYMGDDEDDQ-QEW--------------------VCEA 243 (330)
T ss_dssp SS------------------------SCEEEEEETTSCEEEEEEEEECTTSC-EEE--------------------EEEE
T ss_pred CC------------------------eeEEEEEeCCCeEEEEEecCCCcccc-cee--------------------EEee
Confidence 31 15799999999999999875321100 000 0111
Q ss_pred ccc-CCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCc--eEEE-EecCCC-CeEEEEEccC-CCcEEEEEeCCCcEE
Q 048801 540 RLL-PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS--LVHS-LTGHSA-SSYVLDVHPF-NPRIAMSAGYDGRTI 613 (1715)
Q Consensus 540 ~l~-~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~--~l~t-L~gH~~-~V~sLafSP~-dg~lLaSgs~DGtI~ 613 (1715)
.+. .|...|.+++|++++ +|++++.||.|+||+..+++ .+.. +.+|.. .|.+++|+|. ++.+|++|+.||+|+
T Consensus 244 ~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~ 322 (330)
T 2hes_X 244 ILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVN 322 (330)
T ss_dssp ECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEE
T ss_pred ecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEE
Confidence 222 277889999999665 89999999999999998874 3333 367887 8999999995 578899999999999
Q ss_pred EEECCC
Q 048801 614 VWDIWE 619 (1715)
Q Consensus 614 VWDl~t 619 (1715)
||++.+
T Consensus 323 ~W~~~~ 328 (330)
T 2hes_X 323 FWSLEK 328 (330)
T ss_dssp EEEC--
T ss_pred EEEecc
Confidence 999854
No 32
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=358.38 Aligned_cols=287 Identities=16% Similarity=0.197 Sum_probs=234.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-----------CcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCee
Q 048801 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET-----------AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVI 309 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~t-----------gk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtI 309 (1715)
.|...|.+++|+|||++|++++ |+++++||... .........|...|++++|+|++ .|++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 4677799999999999999888 67788886321 11111223367789999999986 67899999999
Q ss_pred EEEECCCCCceEEE----eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCC
Q 048801 310 RVWRLPDGLPISVL----RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 310 rVWDl~tg~~l~~L----~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
+|||+.+++.+..+ .+|.+.|++|+|+|++. +|++|+.||+|++||+.+++.+..+
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~---~l~sgs~d~~i~iwd~~~~~~~~~~----------------- 165 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT---QAVSGSKDICIKVWDLAQQVVLSSY----------------- 165 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS---EEEEEETTSCEEEEETTTTEEEEEE-----------------
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCC---EEEEEeCCCeEEEEECCCCcEEEEE-----------------
Confidence 99999999876543 48999999999999998 8999999999999999988765443
Q ss_pred CCCCCCCCCCCCcceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeeee--ecCCCCCeeEEEEccCccc
Q 048801 386 NNGPSSSNGLQSHQILCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDV--LSGHENDVNYVQFSGCAVA 462 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~--l~gH~~~V~sLafspdg~a 462 (1715)
..|...|.+++|++++. +|++|+.|+.|+|||+.+++. +.. ...|...+.+++|+|.+
T Consensus 166 --------~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~p~~-- 226 (344)
T 4gqb_B 166 --------RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP---------ASQIGCSAPGYLPTSLAWHPQQ-- 226 (344)
T ss_dssp --------CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC---------EEECC----CCCEEEEEECSSC--
T ss_pred --------cCcCCceEEEEecCCCCCceeeeccccccccccccccce---------eeeeecceeeccceeeeecCCC--
Confidence 23677899999999884 789999999999999987542 222 24556679999999865
Q ss_pred ccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccccc
Q 048801 463 SRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLL 542 (1715)
Q Consensus 463 s~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~ 542 (1715)
..+|++|+.||+|++||+++++ .+..+.
T Consensus 227 -----------------------~~~l~sg~~dg~v~~wd~~~~~-----------------------------~~~~~~ 254 (344)
T 4gqb_B 227 -----------------------SEVFVFGDENGTVSLVDTKSTS-----------------------------CVLSSA 254 (344)
T ss_dssp -----------------------TTEEEEEETTSEEEEEESCC-------------------------------CCEEEE
T ss_pred -----------------------CcceEEeccCCcEEEEECCCCc-----------------------------EEEEEc
Confidence 3689999999999999998643 345567
Q ss_pred CCCCCeeEEEeCCCC-CEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 048801 543 PTPRGVNMIVWSLDN-RFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 543 ~h~~~VtslafSPDG-~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk 621 (1715)
+|...|++++|+|+| ++|++|+.|++|+|||+.+++++ .+.+|.+.|++|+|+|++..+|++|+.||+|++|++.+..
T Consensus 255 ~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 255 VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 889999999999998 57999999999999999988765 5789999999999999777899999999999999997653
No 33
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7e-36 Score=361.31 Aligned_cols=291 Identities=14% Similarity=0.197 Sum_probs=234.8
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEeCCCCcEE----EEecCCCCCeEEEEECCCCCEEEEEeCCCe
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSD------DRLVKIWSMETAFCL----ASCRGHEGDITDLAVSSNNTLVASASNDFV 308 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~------DGtIrIWDl~tgk~l----~tL~gHs~~VtsLafSpDg~lLASGS~DGt 308 (1715)
..+|...|++|+|+|||++||+|+. |+.|++|+..++... ....+|...|++++|+|++.+ ++++.||+
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETTSC
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECCCE
Confidence 4579999999999999999999997 788999998776543 344568999999999999865 56778999
Q ss_pred eEEEECCCCCce----EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCC
Q 048801 309 IRVWRLPDGLPI----SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384 (1715)
Q Consensus 309 IrVWDl~tg~~l----~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~ 384 (1715)
|+|||+.+++.+ ....+|...|++|+|+|++. +|++++.||+|++||+.+++.+..+
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~---~l~sgs~dg~v~iwd~~~~~~~~~~---------------- 177 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT---QAVSGGKDFSVKVWDLSQKAVLKSY---------------- 177 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECSSSS---EEEEEETTSCEEEEETTTTEEEEEE----------------
T ss_pred EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC---EEEEEeCCCeEEEEECCCCcEEEEE----------------
Confidence 999999887654 33458999999999999998 8999999999999999987755443
Q ss_pred CCCCCCCCCCCCCcceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccc
Q 048801 385 SNNGPSSSNGLQSHQILCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVAS 463 (1715)
Q Consensus 385 ~~~~~~~~~~~h~~~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as 463 (1715)
..|...|.+++|++++. +|++++.||.|+|||+.+++.. ....+..|...|.+++|+|++
T Consensus 178 ---------~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~-------~~~~~~~~~~~v~~v~~sp~~--- 238 (357)
T 4g56_B 178 ---------NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA-------TRIDFCASDTIPTSVTWHPEK--- 238 (357)
T ss_dssp ---------CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB-------CBCCCTTCCSCEEEEEECTTS---
T ss_pred ---------cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee-------eeeeeccccccccchhhhhcc---
Confidence 23567799999999875 7899999999999999875421 122345677789999999975
Q ss_pred cccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccC
Q 048801 464 RSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLP 543 (1715)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~ 543 (1715)
..+|++|+.|+.|++||+++++ ....+..
T Consensus 239 ----------------------~~~la~g~~d~~i~~wd~~~~~-----------------------------~~~~~~~ 267 (357)
T 4g56_B 239 ----------------------DDTFACGDETGNVSLVNIKNPD-----------------------------SAQTSAV 267 (357)
T ss_dssp ----------------------TTEEEEEESSSCEEEEESSCGG-----------------------------GCEEECC
T ss_pred ----------------------cceEEEeecccceeEEECCCCc-----------------------------EeEEEec
Confidence 3689999999999999998643 2334566
Q ss_pred CCCCeeEEEeCCCC-CEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC
Q 048801 544 TPRGVNMIVWSLDN-RFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG 620 (1715)
Q Consensus 544 h~~~VtslafSPDG-~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg 620 (1715)
|...|++++|+|++ ++|++|+.|++|+|||+.+++++..+ +|.+.|++|+|+|.++.+|+||+.||+|++|++.+.
T Consensus 268 ~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 268 HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 78899999999987 57999999999999999999887655 899999999999978899999999999999999654
No 34
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=9.7e-35 Score=359.72 Aligned_cols=322 Identities=25% Similarity=0.430 Sum_probs=281.0
Q ss_pred ceeEEEEcCCCCCe-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEE
Q 048801 233 MQNIKKLRGHRDAV-YCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRV 311 (1715)
Q Consensus 233 ~k~l~~L~GH~~~V-t~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrV 311 (1715)
.+....|.||.+.| +|+. ++|++|++|+.||.|+|||+.+++.+..+.+|.+.|++++|+ +.+|++|+.||+|++
T Consensus 108 ~~~~~~l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~v 183 (445)
T 2ovr_B 108 LKSPKVLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKV 183 (445)
T ss_dssp CCCCEEEECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred cceeEEecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEE
Confidence 34567799999975 5544 468999999999999999999999999999999999999997 669999999999999
Q ss_pred EECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 312 WRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 312 WDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
||+.+++.+..+.+|...|.+++|++. .|++++.||+|++||+.+++.+..+.
T Consensus 184 wd~~~~~~~~~~~~h~~~v~~~~~~~~-----~l~s~s~dg~i~~wd~~~~~~~~~~~---------------------- 236 (445)
T 2ovr_B 184 WNAETGECIHTLYGHTSTVRCMHLHEK-----RVVSGSRDATLRVWDIETGQCLHVLM---------------------- 236 (445)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEETT-----EEEEEETTSEEEEEESSSCCEEEEEE----------------------
T ss_pred EECCcCcEEEEECCCCCcEEEEEecCC-----EEEEEeCCCEEEEEECCCCcEEEEEc----------------------
Confidence 999999999999999999999999643 79999999999999999877554432
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccc
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAF 471 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~ 471 (1715)
.|...|.+++| ++.+|++|+.||.|++||+.++ ..+..+.+|...|.++.|. +
T Consensus 237 ---~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~~--~----------- 289 (445)
T 2ovr_B 237 ---GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE---------TCLHTLQGHTNRVYSLQFD--G----------- 289 (445)
T ss_dssp ---CCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT---------EEEEEECCCSSCEEEEEEC--S-----------
T ss_pred ---CCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC---------cEeEEecCCCCceEEEEEC--C-----------
Confidence 24667999999 7889999999999999999764 4567788999999999993 2
Q ss_pred cccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEE
Q 048801 472 KEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMI 551 (1715)
Q Consensus 472 ~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsl 551 (1715)
..+++++.||.|++||+.+++ ....+..|...+.++
T Consensus 290 ---------------~~l~~~~~d~~i~i~d~~~~~-----------------------------~~~~~~~~~~~v~~~ 325 (445)
T 2ovr_B 290 ---------------IHVVSGSLDTSIRVWDVETGN-----------------------------CIHTLTGHQSLTSGM 325 (445)
T ss_dssp ---------------SEEEEEETTSCEEEEETTTCC-----------------------------EEEEECCCCSCEEEE
T ss_pred ---------------CEEEEEeCCCeEEEEECCCCC-----------------------------EEEEEcCCcccEEEE
Confidence 689999999999999998643 223345567778877
Q ss_pred EeCCCCCEEEEEecCCeEEEEECCCCceEEEEec---CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEE--
Q 048801 552 VWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG---HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY-- 626 (1715)
Q Consensus 552 afSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g---H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl-- 626 (1715)
.+ ++.+|++|+.||.|++||+.+++.+..+.+ |...|++++|+ +.+|++|+.||.|+|||+.+++.+..+
T Consensus 326 ~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 400 (445)
T 2ovr_B 326 EL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVT 400 (445)
T ss_dssp EE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEE
T ss_pred EE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC---CCEEEEEeCCCeEEEEECCCCceeeeeec
Confidence 77 577999999999999999999999999986 88999999995 478999999999999999999999988
Q ss_pred ---EcccceEEEEEEcCCCCEEEEEeCCCe----EEEEECCC
Q 048801 627 ---EIGRFKLVDGKFSPDGTSIVLSDDVGQ----IYLLNTGQ 661 (1715)
Q Consensus 627 ---~~h~~~V~svafSPDG~~LAsgs~DG~----I~IWdl~t 661 (1715)
..+.+.|.+++|+|+|.+||+|+.||. |.|||+..
T Consensus 401 ~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 401 LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp CTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred cccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 356778999999999999999999997 99999864
No 35
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=355.65 Aligned_cols=305 Identities=19% Similarity=0.226 Sum_probs=249.3
Q ss_pred CcEEEEecCCCC-CeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceE---EEeCCCCCeEEEEecCCCCcceEEEEecC
Q 048801 275 AFCLASCRGHEG-DITDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS---VLRGHTGAVTAIAFSPRPSAIYQLLSSSD 350 (1715)
Q Consensus 275 gk~l~tL~gHs~-~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~---~L~gH~~~VtsLafSPdg~~~~~LaSgS~ 350 (1715)
..++.++.+|.. .|++++|+|+|++||+|+.|++|+|||+.++.... ...+|...|++++|+|++. +|++++.
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~---~l~s~s~ 81 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN---YLASASF 81 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS---EEEEEET
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC---EEEEEEC
Confidence 457788999988 99999999999999999999999999998875432 2368999999999999988 8999999
Q ss_pred CCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCC
Q 048801 351 DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSS 430 (1715)
Q Consensus 351 DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~ 430 (1715)
|++|++|++..+...... ....|...|.+++|+|+|++|++|+.|+.|++||+....
T Consensus 82 D~~v~iw~~~~~~~~~~~-----------------------~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~ 138 (345)
T 3fm0_A 82 DATTCIWKKNQDDFECVT-----------------------TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED 138 (345)
T ss_dssp TSCEEEEEECCC-EEEEE-----------------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS
T ss_pred CCcEEEEEccCCCeEEEE-----------------------EccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC
Confidence 999999998765421111 123467789999999999999999999999999997642
Q ss_pred ccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCc
Q 048801 431 VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHG 510 (1715)
Q Consensus 431 ~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~ 510 (1715)
....+..+.+|...|.+++|+|++ .+|++++.|++|++|++.++..
T Consensus 139 ------~~~~~~~~~~h~~~v~~~~~~p~~--------------------------~~l~s~s~d~~i~~w~~~~~~~-- 184 (345)
T 3fm0_A 139 ------EYECVSVLNSHTQDVKHVVWHPSQ--------------------------ELLASASYDDTVKLYREEEDDW-- 184 (345)
T ss_dssp ------CEEEEEEECCCCSCEEEEEECSSS--------------------------SCEEEEETTSCEEEEEEETTEE--
T ss_pred ------CeEEEEEecCcCCCeEEEEECCCC--------------------------CEEEEEeCCCcEEEEEecCCCE--
Confidence 234567788999999999999986 7999999999999999875320
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCC-------------
Q 048801 511 KVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG------------- 577 (1715)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg------------- 577 (1715)
.....+.+|...|.+++|+|+|++|++|+.|++|+||+...+
T Consensus 185 -------------------------~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~ 239 (345)
T 3fm0_A 185 -------------------------VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDP 239 (345)
T ss_dssp -------------------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---C
T ss_pred -------------------------EEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCC
Confidence 012345678889999999999999999999999999996321
Q ss_pred --ceEEEEec-CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc----eE-----EEEEcccceEEEEEEcCCC-CE
Q 048801 578 --SLVHSLTG-HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT----PI-----RIYEIGRFKLVDGKFSPDG-TS 644 (1715)
Q Consensus 578 --~~l~tL~g-H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk----~l-----~tl~~h~~~V~svafSPDG-~~ 644 (1715)
.++..+.+ |...|++++|+| ++..|++++.|+.|+||+...+. +. ..+.+|...|.+++|+|++ .+
T Consensus 240 ~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~ 318 (345)
T 3fm0_A 240 SWKCICTLSGFHSRTIYDIAWCQ-LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGL 318 (345)
T ss_dssp EEEEEEEECSSCSSCEEEEEECT-TTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTE
T ss_pred ccceeEEecCCCCCcEEEEEEec-CCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceE
Confidence 34555665 889999999999 66788899999999999987542 11 1223678899999999998 49
Q ss_pred EEEEeCCCeEEEEECCCCccc
Q 048801 645 IVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 645 LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
||+|+.||.|+||++.+++..
T Consensus 319 laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 319 LASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp EEEEETTSCEEEEEECC----
T ss_pred EEEcCCCCcEEEEEecCCCCc
Confidence 999999999999999887644
No 36
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.6e-34 Score=339.08 Aligned_cols=299 Identities=22% Similarity=0.346 Sum_probs=252.3
Q ss_pred ccccceeEEEEcCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCC-----cEEEEecCCCCCeEEEEECCCCCEEEE
Q 048801 229 MVQKMQNIKKLRGHRDAVYCAIFDRS-GRFVITGSDDRLVKIWSMETA-----FCLASCRGHEGDITDLAVSSNNTLVAS 302 (1715)
Q Consensus 229 ~~~~~k~l~~L~GH~~~Vt~VafSpD-G~~LaTGS~DGtIrIWDl~tg-----k~l~tL~gHs~~VtsLafSpDg~lLAS 302 (1715)
...++.+..+|+||.+.|++|+|+|+ +++|||||.||+|+|||+.+. .+...+.+|...|++++|+|++++|++
T Consensus 24 ~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s 103 (340)
T 4aow_A 24 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS 103 (340)
T ss_dssp --CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred cCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence 34566778899999999999999997 689999999999999998754 457789999999999999999999999
Q ss_pred EeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccC
Q 048801 303 ASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSN 382 (1715)
Q Consensus 303 GS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~ 382 (1715)
|+.|+.|++|+...+........+...+..+.+++++. +|++++.|+.+++||+........
T Consensus 104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~s~s~d~~~~~~d~~~~~~~~~--------------- 165 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR---QIVSGSRDKTIKLWNTLGVCKYTV--------------- 165 (340)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS---CEEEEETTSCEEEECTTSCEEEEE---------------
T ss_pred EcccccceEEeecccceeeeecCCCCceeEEEEeecCc---cceeecCCCeEEEEEeCCCceEEE---------------
Confidence 99999999999999998888888999999999999987 799999999999999865432111
Q ss_pred CCCCCCCCCCCCCCCcceeEEEEccCC--CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCc
Q 048801 383 VPSNNGPSSSNGLQSHQILCCAYNANG--TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 383 ~~~~~~~~~~~~~h~~~VtslafSpdG--~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg 460 (1715)
....|...+.+++|++++ .++++++.|+.|++||+.++ ..+..+.+|...|++++|+|++
T Consensus 166 ---------~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~---------~~~~~~~~h~~~v~~~~~s~~~ 227 (340)
T 4aow_A 166 ---------QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC---------KLKTNHIGHTGYLNTVTVSPDG 227 (340)
T ss_dssp ---------CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEECTTS
T ss_pred ---------EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC---------ceeeEecCCCCcEEEEEECCCC
Confidence 123356779999998865 57889999999999999864 4567788999999999999986
Q ss_pred ccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc
Q 048801 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR 540 (1715)
Q Consensus 461 ~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 540 (1715)
.+|++|+.||.|++||+.+.....
T Consensus 228 --------------------------~~l~s~s~Dg~i~iwd~~~~~~~~------------------------------ 251 (340)
T 4aow_A 228 --------------------------SLCASGGKDGQAMLWDLNEGKHLY------------------------------ 251 (340)
T ss_dssp --------------------------SEEEEEETTCEEEEEETTTTEEEE------------------------------
T ss_pred --------------------------CEEEEEeCCCeEEEEEeccCceee------------------------------
Confidence 799999999999999998643211
Q ss_pred ccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe---------cCCCCeEEEEEccCCCcEEEEEeCCCc
Q 048801 541 LLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT---------GHSASSYVLDVHPFNPRIAMSAGYDGR 611 (1715)
Q Consensus 541 l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~---------gH~~~V~sLafSP~dg~lLaSgs~DGt 611 (1715)
...+...|.+++|+|++.++ +++.|+.|+|||+.++..+..+. +|...|++++|+| ++.+|++|+.||.
T Consensus 252 ~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~Dg~ 329 (340)
T 4aow_A 252 TLDGGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTDNL 329 (340)
T ss_dssp EEECSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT-TSSEEEEEETTSC
T ss_pred eecCCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC-CCCEEEEEeCCCE
Confidence 11234579999999988655 56679999999999888776653 6889999999999 7789999999999
Q ss_pred EEEEECCCCc
Q 048801 612 TIVWDIWEGT 621 (1715)
Q Consensus 612 I~VWDl~tgk 621 (1715)
|+|||+.+|+
T Consensus 330 v~iW~~~tGt 339 (340)
T 4aow_A 330 VRVWQVTIGT 339 (340)
T ss_dssp EEEEEEEC--
T ss_pred EEEEeCCCcC
Confidence 9999999885
No 37
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.7e-34 Score=340.79 Aligned_cols=300 Identities=22% Similarity=0.314 Sum_probs=252.6
Q ss_pred CCCCcEEEEecCCCCCeEEEEECCC-CCEEEEEeCCCeeEEEECCCCC-----ceEEEeCCCCCeEEEEecCCCCcceEE
Q 048801 272 METAFCLASCRGHEGDITDLAVSSN-NTLVASASNDFVIRVWRLPDGL-----PISVLRGHTGAVTAIAFSPRPSAIYQL 345 (1715)
Q Consensus 272 l~tgk~l~tL~gHs~~VtsLafSpD-g~lLASGS~DGtIrVWDl~tg~-----~l~~L~gH~~~VtsLafSPdg~~~~~L 345 (1715)
.++..+..+|+||.+.|++|+|+|+ +++||||+.||+|+|||+.++. +...+.+|...|++++|+|++. +|
T Consensus 25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~---~l 101 (340)
T 4aow_A 25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ---FA 101 (340)
T ss_dssp -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS---EE
T ss_pred CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC---EE
Confidence 3455677789999999999999997 6899999999999999997653 4677899999999999999998 89
Q ss_pred EEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEe
Q 048801 346 LSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWS 425 (1715)
Q Consensus 346 aSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWD 425 (1715)
++++.|+.|++|+........... .+...+.++.+++++.+|++|+.|+.+++||
T Consensus 102 ~s~~~d~~i~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d 156 (340)
T 4aow_A 102 LSGSWDGTLRLWDLTTGTTTRRFV-------------------------GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156 (340)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEE-------------------------CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEcccccceEEeecccceeeeec-------------------------CCCCceeEEEEeecCccceeecCCCeEEEEE
Confidence 999999999999988765433321 2244578899999999999999999999999
Q ss_pred CCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCC
Q 048801 426 ACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 505 (1715)
Q Consensus 426 l~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t 505 (1715)
+... ......+.+|...|.+++|++++. ...+++++.|+.|++||+.+
T Consensus 157 ~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~------------------------~~~~~s~~~d~~i~i~d~~~ 204 (340)
T 4aow_A 157 TLGV--------CKYTVQDESHSEWVSCVRFSPNSS------------------------NPIIVSCGWDKLVKVWNLAN 204 (340)
T ss_dssp TTSC--------EEEEECSSSCSSCEEEEEECSCSS------------------------SCEEEEEETTSCEEEEETTT
T ss_pred eCCC--------ceEEEEeccccCcccceEEccCCC------------------------CcEEEEEcCCCEEEEEECCC
Confidence 8653 233455678999999999998651 25789999999999999986
Q ss_pred CccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 048801 506 RRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG 585 (1715)
Q Consensus 506 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g 585 (1715)
++ ....+.+|...|++++|+|++++|++|+.|+.|+|||+.+++.+..+..
T Consensus 205 ~~-----------------------------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~ 255 (340)
T 4aow_A 205 CK-----------------------------LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255 (340)
T ss_dssp TE-----------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred Cc-----------------------------eeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC
Confidence 43 2334567888999999999999999999999999999999999998886
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE---------cccceEEEEEEcCCCCEEEEEeCCCeEEE
Q 048801 586 HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE---------IGRFKLVDGKFSPDGTSIVLSDDVGQIYL 656 (1715)
Q Consensus 586 H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~---------~h~~~V~svafSPDG~~LAsgs~DG~I~I 656 (1715)
+ ..|.++.|+| ++.++ +++.|+.|+|||+.++..+..+. .|...|.+++|+|||++||+|+.||.|+|
T Consensus 256 ~-~~v~~~~~~~-~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~i 332 (340)
T 4aow_A 256 G-DIINALCFSP-NRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 332 (340)
T ss_dssp S-SCEEEEEECS-SSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred C-ceEEeeecCC-CCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 5 5799999999 55555 56779999999999888776654 46778999999999999999999999999
Q ss_pred EECCCCc
Q 048801 657 LNTGQGE 663 (1715)
Q Consensus 657 Wdl~tGe 663 (1715)
|++.+|.
T Consensus 333 W~~~tGt 339 (340)
T 4aow_A 333 WQVTIGT 339 (340)
T ss_dssp EEEEC--
T ss_pred EeCCCcC
Confidence 9999885
No 38
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-35 Score=392.77 Aligned_cols=438 Identities=9% Similarity=0.020 Sum_probs=297.3
Q ss_pred CCCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 048801 191 QADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIW 270 (1715)
Q Consensus 191 ~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIW 270 (1715)
+...|..+.|.+ |..+. ++..+.....|.+.+.+++..+. |.+.|++++|+|++++|++|+.||.|++|
T Consensus 57 ~~~~V~~l~fsp-g~~L~---------S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lw 125 (902)
T 2oaj_A 57 DRSAIKEMRFVK-GIYLV---------VINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVY 125 (902)
T ss_dssp SCCCEEEEEEET-TTEEE---------EEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEE
T ss_pred CCCCEEEEEEcC-CCEEE---------EEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEE
Confidence 356788888877 43222 22333334445566677788886 77899999999999999999999999999
Q ss_pred eCCCCcEE-----------EEecCCCCCeEEEEECCC-CCEEEEEeCCCeeEEEECCCCCceEEEeCC------------
Q 048801 271 SMETAFCL-----------ASCRGHEGDITDLAVSSN-NTLVASASNDFVIRVWRLPDGLPISVLRGH------------ 326 (1715)
Q Consensus 271 Dl~tgk~l-----------~tL~gHs~~VtsLafSpD-g~lLASGS~DGtIrVWDl~tg~~l~~L~gH------------ 326 (1715)
|+.++.+. ..+.+|.+.|++++|+|+ +.+|++|+.||.| |||+.+++++..+.+|
T Consensus 126 d~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~ 204 (902)
T 2oaj_A 126 DIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSE 204 (902)
T ss_dssp ETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCC
T ss_pred ECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccccc
Confidence 99988764 234679999999999996 5789999999999 9999999988888766
Q ss_pred ------CCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCC-----CC-----------CCCccCcc---
Q 048801 327 ------TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLP-----KP-----------PDAITGKS--- 381 (1715)
Q Consensus 327 ------~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~-----~~-----------~~~i~g~~--- 381 (1715)
...|++++|+|++. +|++++.||+|++||+.+++.+....+. .+ ...+....
T Consensus 205 ~~~~~h~~~V~~v~fspdg~---~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~ 281 (902)
T 2oaj_A 205 KTNEKRTPKVIQSLYHPNSL---HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMC 281 (902)
T ss_dssp CTTSCBCCCEEEEEECTTSS---EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEE
T ss_pred ccccccCCCeEEEEEcCCCC---EEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEe
Confidence 57799999999987 8999999999999999988765321110 00 00000000
Q ss_pred ---------CCCC--CCC----CCC------------------------------CCCCCCcceeEEEEcc---------
Q 048801 382 ---------NVPS--NNG----PSS------------------------------SNGLQSHQILCCAYNA--------- 407 (1715)
Q Consensus 382 ---------~~~~--~~~----~~~------------------------------~~~~h~~~VtslafSp--------- 407 (1715)
.... ... ... ....+...|.++++.+
T Consensus 282 ~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~ 361 (902)
T 2oaj_A 282 ENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGC 361 (902)
T ss_dssp CSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHT
T ss_pred cCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCC
Confidence 0000 000 000 0001234455565544
Q ss_pred -CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccc-----cccccccc-ccccc
Q 048801 408 -NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAM-----SDAFKEEN-VPKFK 480 (1715)
Q Consensus 408 -dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~-----~~~~~~~~-~~~~~ 480 (1715)
++..+++++.||.|++|++.++..... .......+..|...|++++|++.....-... ........ .....
T Consensus 362 ~d~~~l~~~s~dg~l~~~~~~~g~~~~~--~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~ 439 (902)
T 2oaj_A 362 HNPGLILLILGNGEIETMLYPSGIFTDK--ASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKR 439 (902)
T ss_dssp BSCSEEEEEETTSCEEEEETTTCCEECC--GGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCC
T ss_pred CCceeEEEEcCCCcEEEEECCCCCcccc--cccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCC
Confidence 233566677777788887754421100 0001123456667888888865321000000 00000000 00000
Q ss_pred --CCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC
Q 048801 481 --NSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR 558 (1715)
Q Consensus 481 --~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~ 558 (1715)
....++..|++|+.||+|++||+.++..... ..+.... ......+|...|.+++|+|||+
T Consensus 440 sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~-----~~~~~~l-------------~~~~~~~h~~~V~svafspdg~ 501 (902)
T 2oaj_A 440 QKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN-----ASFEVNL-------------SRTLNKAKELAVDKISFAAETL 501 (902)
T ss_dssp CCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT-----BCEEEEH-------------HHHTTCSSSCCEEEEEEETTTT
T ss_pred cccccccCcEEEEecCCCcEEEEECCCccccCC-----ceEEeec-------------hhhcCCCCCCceeEEEecCCCC
Confidence 0112467999999999999999987531100 0000000 0000126788999999999999
Q ss_pred EEEEEecCCeEEEEECCCC---------------------------------------------ceEEEEecCCCCeEEE
Q 048801 559 FVLAAIMDCRICVWNAVDG---------------------------------------------SLVHSLTGHSASSYVL 593 (1715)
Q Consensus 559 ~LaTgs~DGtI~IWDl~sg---------------------------------------------~~l~tL~gH~~~V~sL 593 (1715)
+||+|+.||+|+||++.++ +++..+.+|.+.|++|
T Consensus 502 ~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~sv 581 (902)
T 2oaj_A 502 ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAI 581 (902)
T ss_dssp EEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEE
T ss_pred eEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEE
Confidence 9999999999999999766 2477888999999999
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceEEE-----EE-cccceEEEEEEc-----CCC---CEEEEEeCCCeEEEEEC
Q 048801 594 DVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRI-----YE-IGRFKLVDGKFS-----PDG---TSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 594 afSP~dg~lLaSgs~DGtI~VWDl~tgk~l~t-----l~-~h~~~V~svafS-----PDG---~~LAsgs~DG~I~IWdl 659 (1715)
+|+| ++ +||+|+.||+|+|||+.++..+.. +. +|...|++++|| ||| ++|++|+.||+|++|++
T Consensus 582 afSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 582 NNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred EecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 9999 66 999999999999999988777643 22 677789999999 886 89999999999999999
Q ss_pred ---CCCccc
Q 048801 660 ---GQGESQ 665 (1715)
Q Consensus 660 ---~tGe~~ 665 (1715)
.+|+..
T Consensus 660 ~p~~~g~~~ 668 (902)
T 2oaj_A 660 LPASGGKFD 668 (902)
T ss_dssp EECGGGCEE
T ss_pred ecCCCCcEE
Confidence 677644
No 39
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-34 Score=337.61 Aligned_cols=308 Identities=17% Similarity=0.246 Sum_probs=265.7
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
......|.+|.+.|++++|+|+|++|++|+.||.|+|||+.+++.+..+.+|...|++++|+|++++|++++.||.|+||
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCC-----CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 313 RLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD-----GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 313 Dl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D-----GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
|+.+++.+..+. |...|.+++|+|++. +|++++.+ |.|.+||+..+.....+.....
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~~~~---~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~-------------- 163 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFSPCGN---YFLAILDNVMKNPGSINIYEIERDSATHELTKVSE-------------- 163 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECTTSS---EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS--------------
T ss_pred ECCCCcEEEEee-cCCCeEEEEEccCCC---EEEEecCCccCCCCEEEEEEecCCccceeeccccc--------------
Confidence 999999999888 889999999999988 88999888 9999999987765433322110
Q ss_pred CCCCCCCCCCc--ceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccc
Q 048801 388 GPSSSNGLQSH--QILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 388 ~~~~~~~~h~~--~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~ 465 (1715)
........+.. .+.+++|+|++.+|++|+.||.|++||+.+. ...+..+..|...|.+++|+|++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~~v~~~~~~~~~----- 230 (369)
T 3zwl_B 164 EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN--------YEYVDSIDLHEKSISDMQFSPDL----- 230 (369)
T ss_dssp SCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT--------TEEEEEEECCSSCEEEEEECTTS-----
T ss_pred ceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC--------cEeEEEEecCCCceeEEEECCCC-----
Confidence 01111112233 7999999999999999999999999999763 24567788899999999999986
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~ 545 (1715)
..|++++.||.|++||+.++.... ...+.
T Consensus 231 ---------------------~~l~~~~~d~~i~v~d~~~~~~~~------------------------------~~~~~ 259 (369)
T 3zwl_B 231 ---------------------TYFITSSRDTNSFLVDVSTLQVLK------------------------------KYETD 259 (369)
T ss_dssp ---------------------SEEEEEETTSEEEEEETTTCCEEE------------------------------EEECS
T ss_pred ---------------------CEEEEecCCceEEEEECCCCceee------------------------------eecCC
Confidence 789999999999999998644221 11256
Q ss_pred CCeeEEEeCCCCCEEEEEecCC--------------eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCc
Q 048801 546 RGVNMIVWSLDNRFVLAAIMDC--------------RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGR 611 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~DG--------------tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGt 611 (1715)
..+.+++|+|++.+|++++.++ .|++||+.+++.+..+.+|...|++++|+| ++.+|++++.||.
T Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~ 338 (369)
T 3zwl_B 260 CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISP-QGTSYASGGEDGF 338 (369)
T ss_dssp SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSE
T ss_pred CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECC-CCCEEEEEcCCCe
Confidence 6799999999999999999988 899999999999999999999999999999 7789999999999
Q ss_pred EEEEECCCCceE
Q 048801 612 TIVWDIWEGTPI 623 (1715)
Q Consensus 612 I~VWDl~tgk~l 623 (1715)
|+||++..+...
T Consensus 339 v~iw~~~~~~~~ 350 (369)
T 3zwl_B 339 IRLHHFEKSYFD 350 (369)
T ss_dssp EEEEEECHHHHT
T ss_pred EEEEECccccch
Confidence 999999765543
No 40
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=7e-35 Score=355.84 Aligned_cols=346 Identities=13% Similarity=0.079 Sum_probs=273.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe
Q 048801 245 AVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR 324 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~ 324 (1715)
.+++++|+|+|++|++|+.||.|++||+.++.....+..| ..+...+|++++++||+|+.||.|+|||+.++..+..+.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence 4558899999999999999999999999988777666666 455556789999999999999999999999999888888
Q ss_pred CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEE
Q 048801 325 GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCA 404 (1715)
Q Consensus 325 gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsla 404 (1715)
+|...|++++|+|++. +|++++.||.|++||+.+++.+..+ ..|...|.+++
T Consensus 137 ~h~~~v~~~~~~~~~~---~l~s~s~d~~i~iwd~~~~~~~~~~-------------------------~~h~~~v~~~~ 188 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGE---ALISSSQDMQLKIWSVKDGSNPRTL-------------------------IGHRATVTDIA 188 (420)
T ss_dssp SSSSCEEEEEECTTSS---EEEEEETTSEEEEEETTTCCCCEEE-------------------------ECCSSCEEEEE
T ss_pred cccCccEEEEECCCCC---EEEEEeCCCeEEEEeCCCCcCceEE-------------------------cCCCCcEEEEE
Confidence 9999999999999987 8999999999999999887654433 23567799999
Q ss_pred EccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCc-
Q 048801 405 YNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSW- 483 (1715)
Q Consensus 405 fSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~- 483 (1715)
|+|++.+|++|+.||.|++||+.+++. ...+.....|...|.+++|.+..... .. ...........|
T Consensus 189 ~~~~~~~l~s~~~d~~v~iwd~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~----~~--~~~~~~v~~~~~s 256 (420)
T 3vl1_A 189 IIDRGRNVLSASLDGTIRLWECGTGTT------IHTFNRKENPHDGVNSIALFVGTDRQ----LH--EISTSKKNNLEFG 256 (420)
T ss_dssp EETTTTEEEEEETTSCEEEEETTTTEE------EEEECBTTBTTCCEEEEEEEECCCSS----CG--GGCCCCCCTTCSS
T ss_pred EcCCCCEEEEEcCCCcEEEeECCCCce------eEEeecCCCCCCCccEEEEecCCcce----ee--ecccCcccceEEc
Confidence 999999999999999999999987532 22222223577789999987654110 00 000000011111
Q ss_pred ccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC-EEEE
Q 048801 484 FCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR-FVLA 562 (1715)
Q Consensus 484 ~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~-~LaT 562 (1715)
..+..|++++.||.|++||++++.... .....|...|.+++|+|++. +|++
T Consensus 257 ~~~~~l~~~~~dg~i~i~d~~~~~~~~----------------------------~~~~~~~~~v~~~~~~~~~~~~l~~ 308 (420)
T 3vl1_A 257 TYGKYVIAGHVSGVITVHNVFSKEQTI----------------------------QLPSKFTCSCNSLTVDGNNANYIYA 308 (420)
T ss_dssp CTTEEEEEEETTSCEEEEETTTCCEEE----------------------------EECCTTSSCEEEEEECSSCTTEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCceeE----------------------------EcccccCCCceeEEEeCCCCCEEEE
Confidence 235789999999999999998644211 11234677899999999999 9999
Q ss_pred EecCCeEEEEECCCCce-EEEEec-CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC---------ceEEEEEcccc
Q 048801 563 AIMDCRICVWNAVDGSL-VHSLTG-HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG---------TPIRIYEIGRF 631 (1715)
Q Consensus 563 gs~DGtI~IWDl~sg~~-l~tL~g-H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg---------k~l~tl~~h~~ 631 (1715)
|+.||.|++||+.+++. +..+.+ |...|.++.+ + ++.+|++++.||.|+||++... .....+..+..
T Consensus 309 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (420)
T 3vl1_A 309 GYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-A-AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDD 386 (420)
T ss_dssp EETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-E-TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSC
T ss_pred EeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-C-CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCc
Confidence 99999999999999754 777776 6777888865 4 4679999999999999998763 22334556778
Q ss_pred eEEEEEEcCCCC---EEEEEeCCCeEEEEECCC
Q 048801 632 KLVDGKFSPDGT---SIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 632 ~V~svafSPDG~---~LAsgs~DG~I~IWdl~t 661 (1715)
.|.+++|+|+|. .|++++.+|.+.+|++..
T Consensus 387 ~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 387 AVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 899999999999 888888899999999854
No 41
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.9e-34 Score=345.45 Aligned_cols=304 Identities=15% Similarity=0.243 Sum_probs=243.8
Q ss_pred cEEEEecCCCCCeEEEEE-----CC-CCCEEEEEeCCCeeEEEECCCC-------CceEEEeCCCCCeEEEEecCCCCcc
Q 048801 276 FCLASCRGHEGDITDLAV-----SS-NNTLVASASNDFVIRVWRLPDG-------LPISVLRGHTGAVTAIAFSPRPSAI 342 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLaf-----Sp-Dg~lLASGS~DGtIrVWDl~tg-------~~l~~L~gH~~~VtsLafSPdg~~~ 342 (1715)
.+..+|.+|.+.|++++| ++ ++.+||+|+.|++|+|||+.++ .+...+.+|...|++++|+|++.
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~-- 89 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC-- 89 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--
Confidence 456789999999999999 76 8999999999999999999753 45677899999999999999987
Q ss_pred eEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEE
Q 048801 343 YQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFAR 422 (1715)
Q Consensus 343 ~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~Ir 422 (1715)
+|++++.|++|++||+.+++.+..+ ..|...|.+++|+|++++|++|+.|+.|+
T Consensus 90 -~l~s~s~D~~v~lwd~~~~~~~~~~-------------------------~~h~~~v~~v~~sp~~~~l~s~~~d~~i~ 143 (343)
T 2xzm_R 90 -FAISSSWDKTLRLWDLRTGTTYKRF-------------------------VGHQSEVYSVAFSPDNRQILSAGAEREIK 143 (343)
T ss_dssp -EEEEEETTSEEEEEETTSSCEEEEE-------------------------ECCCSCEEEEEECSSTTEEEEEETTSCEE
T ss_pred -EEEEEcCCCcEEEEECCCCcEEEEE-------------------------cCCCCcEEEEEECCCCCEEEEEcCCCEEE
Confidence 8999999999999999987654433 23567799999999999999999999999
Q ss_pred EEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEe
Q 048801 423 VWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWI 502 (1715)
Q Consensus 423 VWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWD 502 (1715)
+||+.... ........+|...|.+++|+|.+.... .......+|++++.||.|++||
T Consensus 144 ~wd~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~~l~s~~~d~~i~iwd 200 (343)
T 2xzm_R 144 LWNILGEC-------KFSSAEKENHSDWVSCVRYSPIMKSAN----------------KVQPFAPYFASVGWDGRLKVWN 200 (343)
T ss_dssp EEESSSCE-------EEECCTTTSCSSCEEEEEECCCCCSCS----------------CCCSSCCEEEEEETTSEEEEEE
T ss_pred EEeccCCc-------eeeeecccCCCceeeeeeecccccccc----------------ccCCCCCEEEEEcCCCEEEEEc
Confidence 99996321 111222347889999999999752100 0001136899999999999999
Q ss_pred cCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC-CceEE
Q 048801 503 PRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD-GSLVH 581 (1715)
Q Consensus 503 l~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s-g~~l~ 581 (1715)
... .....+.+|...|.+++|+|+|++|++|+.|+.|+|||+.. .....
T Consensus 201 ~~~------------------------------~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~ 250 (343)
T 2xzm_R 201 TNF------------------------------QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR 250 (343)
T ss_dssp TTT------------------------------EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE
T ss_pred CCC------------------------------ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce
Confidence 432 11234567888999999999999999999999999999954 44444
Q ss_pred EEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEE--EEE-----------cccceEEEEEEcCCCCEEEEE
Q 048801 582 SLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIR--IYE-----------IGRFKLVDGKFSPDGTSIVLS 648 (1715)
Q Consensus 582 tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~--tl~-----------~h~~~V~svafSPDG~~LAsg 648 (1715)
.+ .+...|.+++|+| ++.+++ ++.|+.|+||++.+++.+. .+. +|...|.+++|+|+|++||+|
T Consensus 251 ~~-~~~~~v~~v~~sp-~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg 327 (343)
T 2xzm_R 251 EF-DAGSTINQIAFNP-KLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAG 327 (343)
T ss_dssp EE-ECSSCEEEEEECS-SSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEE
T ss_pred ee-cCCCcEEEEEECC-CCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEe
Confidence 44 3556799999999 567765 4568889999998876544 443 466779999999999999999
Q ss_pred eCCCeEEEEECCCCc
Q 048801 649 DDVGQIYLLNTGQGE 663 (1715)
Q Consensus 649 s~DG~I~IWdl~tGe 663 (1715)
+.||.|++|++.+|+
T Consensus 328 ~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 328 FTDGVIRTFSFETSA 342 (343)
T ss_dssp ETTSEEEEEEEEEEE
T ss_pred cCCceEEEEEEEccC
Confidence 999999999987653
No 42
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-34 Score=342.04 Aligned_cols=306 Identities=19% Similarity=0.191 Sum_probs=239.1
Q ss_pred CCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC--CceEEE-eC-CCCCeEEEEecCCCCcceEEEEe
Q 048801 273 ETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG--LPISVL-RG-HTGAVTAIAFSPRPSAIYQLLSS 348 (1715)
Q Consensus 273 ~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg--~~l~~L-~g-H~~~VtsLafSPdg~~~~~LaSg 348 (1715)
.+.+++.++.+|.+.|++++|+++ +||+|+.|++|+||++.++ ..+..+ .+ |...|++++|+|++. +|+++
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~---~las~ 76 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS---LLAAG 76 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSS---EEEEE
T ss_pred cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCC---EEEEE
Confidence 345678899999999999999988 9999999999999999875 345556 44 999999999999987 89999
Q ss_pred cCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCC
Q 048801 349 SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 349 S~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t 428 (1715)
+.|++|+|||+....... . ..........|...|.+++|+|+|++|++|+.|+.|+|||+..
T Consensus 77 s~D~~v~iw~~~~~~~~~-~-----------------~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~ 138 (330)
T 2hes_X 77 SFDSTVSIWAKEESADRT-F-----------------EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE 138 (330)
T ss_dssp ETTSCEEEEEC--------C-----------------CCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCT
T ss_pred eCCCcEEEEEcccCcCcc-c-----------------cceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccC
Confidence 999999999986432100 0 0000112245678899999999999999999999999999953
Q ss_pred CCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCcc
Q 048801 429 SSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS 508 (1715)
Q Consensus 429 ~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~ 508 (1715)
.. .....+..+.+|...|.+++|+|++ .+|++++.|++|++||+.++.
T Consensus 139 ~~-----~~~~~~~~~~~h~~~v~~v~~~p~~--------------------------~~l~s~s~D~~i~iW~~~~~~- 186 (330)
T 2hes_X 139 SG-----EEYECISVLQEHSQDVKHVIWHPSE--------------------------ALLASSSYDDTVRIWKDYDDD- 186 (330)
T ss_dssp TC-----CCCEEEEEECCCSSCEEEEEECSSS--------------------------SEEEEEETTSCEEEEEEETTE-
T ss_pred CC-----CCeEEEEEeccCCCceEEEEECCCC--------------------------CEEEEEcCCCeEEEEECCCCC-
Confidence 21 1234567789999999999999986 799999999999999986421
Q ss_pred CcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC--CCEEEEEecCCeEEEEECCCC--------c
Q 048801 509 HGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD--NRFVLAAIMDCRICVWNAVDG--------S 578 (1715)
Q Consensus 509 ~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD--G~~LaTgs~DGtI~IWDl~sg--------~ 578 (1715)
...+..+.+|...|.+++|+|+ +.+|++|+.|++|+||++..+ .
T Consensus 187 --------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 187 --------------------------WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp --------------------------EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred --------------------------eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 0123456678899999999998 779999999999999998764 3
Q ss_pred eEEEEec-CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc--eEEEE-Ecccc-eEEEEEEcC--CCCEEEEEeCC
Q 048801 579 LVHSLTG-HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT--PIRIY-EIGRF-KLVDGKFSP--DGTSIVLSDDV 651 (1715)
Q Consensus 579 ~l~tL~g-H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk--~l~tl-~~h~~-~V~svafSP--DG~~LAsgs~D 651 (1715)
+...+.+ |...|++++|++ ++ +|++++.||+|+||++.+++ .+... ..|.. .|.+++|+| ++++||+|+.|
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~-~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~D 318 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGF-NG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDD 318 (330)
T ss_dssp EEEECCSCCSSCEEEEEECT-TS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETT
T ss_pred EeeecccccccceEEEEEcC-CC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCC
Confidence 4555655 999999999997 44 78899999999999998874 33333 45665 899999999 79999999999
Q ss_pred CeEEEEECCC
Q 048801 652 GQIYLLNTGQ 661 (1715)
Q Consensus 652 G~I~IWdl~t 661 (1715)
|.|+||++..
T Consensus 319 g~v~~W~~~~ 328 (330)
T 2hes_X 319 GIVNFWSLEK 328 (330)
T ss_dssp SEEEEEEC--
T ss_pred CcEEEEEecc
Confidence 9999999854
No 43
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-33 Score=350.56 Aligned_cols=345 Identities=21% Similarity=0.315 Sum_probs=274.7
Q ss_pred eeEEEEcCCCCCe-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 234 QNIKKLRGHRDAV-YCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 234 k~l~~L~GH~~~V-t~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
.....|.+|.+.| +|+.| ++++|++|+.||.|+|||+.+++.+..+.+|.+.|++++|++++ +|++|+.||+|+||
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 3456899999885 66666 56799999999999999999999999999999999999999988 99999999999999
Q ss_pred ECCCCCceEEEeCCCCCeEEEEecC--CCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCC
Q 048801 313 RLPDGLPISVLRGHTGAVTAIAFSP--RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPS 390 (1715)
Q Consensus 313 Dl~tg~~l~~L~gH~~~VtsLafSP--dg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~ 390 (1715)
|+.++..+..+.+|...|.+++|++ ++. +|++++.||+|++||+.++.................. ........
T Consensus 189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~---~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 263 (464)
T 3v7d_B 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIK---YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT--PEENPYFV 263 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEESSSCE---EEEEEETTSCEEEEECCCCCCC------CCSSEEESC--GGGCTTEE
T ss_pred ECCCCcEEEEECCCCCccEEEEEecCCCCC---EEEEEcCCCcEEEeeCCCCcccccccccCCcceEeec--cCCCeEEE
Confidence 9999999999999999999999995 444 8999999999999999887654332211110000000 00000001
Q ss_pred CCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccc
Q 048801 391 SSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDA 470 (1715)
Q Consensus 391 ~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~ 470 (1715)
.....|...|.++ ++++.+|++|+.||.|++||+.++ ..+..+.+|...|.+++|+|++
T Consensus 264 ~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~---------- 322 (464)
T 3v7d_B 264 GVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM---------KCLYILSGHTDRIYSTIYDHER---------- 322 (464)
T ss_dssp EEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEEETTT----------
T ss_pred EEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC---------cEEEEecCCCCCEEEEEEcCCC----------
Confidence 1233455556665 678999999999999999999864 4577788999999999999986
Q ss_pred ccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeE
Q 048801 471 FKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNM 550 (1715)
Q Consensus 471 ~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vts 550 (1715)
..|++|+.||.|++||+.+++ ....+.+|...|.+
T Consensus 323 ----------------~~l~sg~~dg~i~vwd~~~~~-----------------------------~~~~~~~h~~~v~~ 357 (464)
T 3v7d_B 323 ----------------KRCISASMDTTIRIWDLENGE-----------------------------LMYTLQGHTALVGL 357 (464)
T ss_dssp ----------------TEEEEEETTSCEEEEETTTTE-----------------------------EEEEECCCSSCEEE
T ss_pred ----------------CEEEEEeCCCcEEEEECCCCc-----------------------------EEEEEeCCCCcEEE
Confidence 799999999999999998643 23445678889999
Q ss_pred EEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEE-EEcc
Q 048801 551 IVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRI-YEIG 629 (1715)
Q Consensus 551 lafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~t-l~~h 629 (1715)
++|+ +.+|++|+.||.|++||+.++.....+. |...+..++|++ ++.+|++|+ ||.|+|||+.+++++.. +..+
T Consensus 358 ~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~ 432 (464)
T 3v7d_B 358 LRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYV-SDNILVSGS-ENQFNIYNLRSGKLVHANILKD 432 (464)
T ss_dssp EEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEE-CSSEEEEEE-TTEEEEEETTTCCEEESCTTTT
T ss_pred EEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEe-CCCEEEEec-CCeEEEEECCCCcEEehhhccC
Confidence 9997 6899999999999999999988776664 666788889999 778888888 99999999999999986 5567
Q ss_pred cceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 630 RFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 630 ~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
...|.+++|+ +..++++++.+|.+.+|-
T Consensus 433 ~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 433 ADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp CSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 8889999997 344555667777666553
No 44
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-33 Score=375.03 Aligned_cols=391 Identities=20% Similarity=0.259 Sum_probs=312.5
Q ss_pred CCCCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 048801 190 MQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKI 269 (1715)
Q Consensus 190 ~~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrI 269 (1715)
.|.+.|.++.+++.|..++... .......|.+.+.+.+..+.+|.+.|++++|+|+|++|++|+.||.|+|
T Consensus 11 ~h~~~v~~i~~sp~~~~la~~~---------~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEPWVLTTL---------YSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp EECSCEEEEEECSSSSEEEEEE---------TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred cCCCceEEEEECCCCCEEEEEe---------CCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 4567789999988775544332 2223334556678889999999999999999999999999999999999
Q ss_pred EeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC-CceEEEeCCCCCeEEEEecC-CCCcceEEEE
Q 048801 270 WSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG-LPISVLRGHTGAVTAIAFSP-RPSAIYQLLS 347 (1715)
Q Consensus 270 WDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg-~~l~~L~gH~~~VtsLafSP-dg~~~~~LaS 347 (1715)
||+.+++.+..+.+|.+.|++++|+|++.+|++|+.||+|+||++.++ .....+.+|...|.+++|+| ++. .|++
T Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~---~l~~ 158 (814)
T 3mkq_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS---TFAS 158 (814)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE---EEEE
T ss_pred EECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC---EEEE
Confidence 999999999999999999999999999999999999999999999987 66788889999999999999 555 8999
Q ss_pred ecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc--CCCeEEEecCCCeEEEEe
Q 048801 348 SSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA--NGTVFVTGSSDTFARVWS 425 (1715)
Q Consensus 348 gS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp--dG~~LatGs~DG~IrVWD 425 (1715)
++.||+|++||+.++.....+.. .+...+.+++|+| ++.+|++|+.||.|++||
T Consensus 159 ~~~dg~v~vwd~~~~~~~~~~~~------------------------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d 214 (814)
T 3mkq_A 159 GCLDRTVKVWSLGQSTPNFTLTT------------------------GQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214 (814)
T ss_dssp EETTSEEEEEETTCSSCSEEEEC------------------------CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEE
T ss_pred EeCCCeEEEEECCCCcceeEEec------------------------CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 99999999999987664433321 1235689999999 999999999999999999
Q ss_pred CCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCC
Q 048801 426 ACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 505 (1715)
Q Consensus 426 l~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t 505 (1715)
+.++ ..+..+.+|...|.+++|+|++ ..|++++.||.|++||+.+
T Consensus 215 ~~~~---------~~~~~~~~~~~~v~~~~~~~~~--------------------------~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 215 YQTK---------SCVATLEGHMSNVSFAVFHPTL--------------------------PIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp TTTT---------EEEEEEECCSSCEEEEEECSSS--------------------------SEEEEEETTSCEEEEETTT
T ss_pred CCCC---------cEEEEEcCCCCCEEEEEEcCCC--------------------------CEEEEEeCCCeEEEEECCC
Confidence 9764 3467788999999999999986 7999999999999999986
Q ss_pred CccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCE-EEEEecCCeEEEEECCCCceEE---
Q 048801 506 RRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRF-VLAAIMDCRICVWNAVDGSLVH--- 581 (1715)
Q Consensus 506 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~-LaTgs~DGtI~IWDl~sg~~l~--- 581 (1715)
++ ....+..+...|.+++|+|+|.. +++++.++.+.+|++..+....
T Consensus 260 ~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (814)
T 3mkq_A 260 YK-----------------------------VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLD 310 (814)
T ss_dssp CS-----------------------------EEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEEC
T ss_pred Cc-----------------------------EEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEEC
Confidence 43 22334556678999999999873 2444557778889876432211
Q ss_pred ----------------------------------------EEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 048801 582 ----------------------------------------SLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 582 ----------------------------------------tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk 621 (1715)
.+..+...+.+++|+| +++++++++ ||.+.||++....
T Consensus 311 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~ 388 (814)
T 3mkq_A 311 PVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWR 388 (814)
T ss_dssp SSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTE
T ss_pred CCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECcccc
Confidence 1123455678999999 778888887 8999999986544
Q ss_pred eEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccccccceeecCCC---ccEEE-cCCCCe
Q 048801 622 PIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAKYDQFFLGDY---RPLIR-DSLGNV 689 (1715)
Q Consensus 622 ~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~~~~~~~fs~D~---r~L~~-d~~g~v 689 (1715)
.. +.+.+.+++|+|||++||+++.+|.|.+|+.-.+. ........|++|+ ..|+. ..++.+
T Consensus 389 ~~-----~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~~--~~~v~~~~~s~dg~~~~~l~~~~~d~~v 453 (814)
T 3mkq_A 389 NK-----AFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEV--TSWSVPMHSAIDRLFSGALLGVKSDGFV 453 (814)
T ss_dssp EE-----EEEECSEEEECTTSSCEEEECTTCCEEEEETTEEC--TTCCCCCSSCCCEEECSSSEEEEETTEE
T ss_pred cc-----CCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCCc--cceEEcCCcCccceecceEEEEecCCEE
Confidence 32 24578899999999999999999999999865442 2334556788998 34443 444443
No 45
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.2e-33 Score=343.15 Aligned_cols=291 Identities=19% Similarity=0.290 Sum_probs=243.2
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCC------------------CeEEEEecCCCCcceE
Q 048801 283 GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTG------------------AVTAIAFSPRPSAIYQ 344 (1715)
Q Consensus 283 gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~------------------~VtsLafSPdg~~~~~ 344 (1715)
+|.+.|++++|+|||++||+|+ ++.++||++.++..+..+..|.. .|++++|+|++. +
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~---~ 137 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK---F 137 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS---E
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC---E
Confidence 5999999999999999999987 68999999999998888876542 399999999998 8
Q ss_pred EEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEE
Q 048801 345 LLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVW 424 (1715)
Q Consensus 345 LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVW 424 (1715)
|++|+.|++|++||+.+++.+..+ ..|...|.+++|+|++.+|++|+.|+.|++|
T Consensus 138 l~s~~~d~~i~iwd~~~~~~~~~~-------------------------~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iw 192 (393)
T 1erj_A 138 LATGAEDRLIRIWDIENRKIVMIL-------------------------QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 192 (393)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEE-------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEEcCCCeEEEEECCCCcEEEEE-------------------------ccCCCCEEEEEEcCCCCEEEEecCCCcEEEE
Confidence 999999999999999877644332 2356779999999999999999999999999
Q ss_pred eCCCCCccCCCCCceeeeeecCCCCCeeEEEEcc-CcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEec
Q 048801 425 SACKSSVEDSEQPIHELDVLSGHENDVNYVQFSG-CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIP 503 (1715)
Q Consensus 425 Dl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafsp-dg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl 503 (1715)
|+.+++ ....+. +...+.+++|+| ++ .+|++|+.||.|++||+
T Consensus 193 d~~~~~---------~~~~~~-~~~~v~~~~~~~~~~--------------------------~~l~~~s~d~~v~iwd~ 236 (393)
T 1erj_A 193 DLRTGQ---------CSLTLS-IEDGVTTVAVSPGDG--------------------------KYIAAGSLDRAVRVWDS 236 (393)
T ss_dssp ETTTTE---------EEEEEE-CSSCEEEEEECSTTC--------------------------CEEEEEETTSCEEEEET
T ss_pred ECCCCe---------eEEEEE-cCCCcEEEEEECCCC--------------------------CEEEEEcCCCcEEEEEC
Confidence 998753 233333 556899999998 44 79999999999999999
Q ss_pred CCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC-------
Q 048801 504 RSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD------- 576 (1715)
Q Consensus 504 ~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s------- 576 (1715)
.++.....+. .......+|...|.+++|+|+|++|++|+.|+.|+|||+.+
T Consensus 237 ~~~~~~~~~~----------------------~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~ 294 (393)
T 1erj_A 237 ETGFLVERLD----------------------SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 294 (393)
T ss_dssp TTCCEEEEEC----------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------
T ss_pred CCCcEEEeec----------------------ccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccc
Confidence 8754322110 00112246788999999999999999999999999999975
Q ss_pred -----CceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcC------CCCEE
Q 048801 577 -----GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSP------DGTSI 645 (1715)
Q Consensus 577 -----g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSP------DG~~L 645 (1715)
+.+...+.+|...|.+++|+| ++.+|++|+.||.|++||+.+++++..+.+|...|.+++|++ ++.+|
T Consensus 295 ~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l 373 (393)
T 1erj_A 295 KTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 373 (393)
T ss_dssp ------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEE
T ss_pred cCCCCCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEE
Confidence 345677889999999999999 778999999999999999999999999999999999999986 78999
Q ss_pred EEEeCCCeEEEEECCC
Q 048801 646 VLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 646 Asgs~DG~I~IWdl~t 661 (1715)
|+|+.||.|+||++..
T Consensus 374 ~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 374 ATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEETTSEEEEEEEEE
T ss_pred EEECCCCcEEECcccc
Confidence 9999999999999754
No 46
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=9.1e-34 Score=342.85 Aligned_cols=314 Identities=14% Similarity=0.126 Sum_probs=255.8
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc------EEEEecCCCCCeEEEEECCC----C---CE
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF------CLASCRGHEGDITDLAVSSN----N---TL 299 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk------~l~tL~gHs~~VtsLafSpD----g---~l 299 (1715)
......|.+|.+.|++|+|+| ++|++|+.||.|+||++.++. .+..+.+|...|++++|+|+ + .+
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 345677899999999999998 799999999999999999988 78889999999999999999 9 99
Q ss_pred EEEEeCCCeeEEEECCCCCc-----eEEEeCC-----CCCeEEEEec----CCCCcceE-EEEecCCCcEEEEecCC---
Q 048801 300 VASASNDFVIRVWRLPDGLP-----ISVLRGH-----TGAVTAIAFS----PRPSAIYQ-LLSSSDDGTCRIWDARY--- 361 (1715)
Q Consensus 300 LASGS~DGtIrVWDl~tg~~-----l~~L~gH-----~~~VtsLafS----Pdg~~~~~-LaSgS~DGtVrIWDl~t--- 361 (1715)
|++++.||.|++|++.++.. +..+..| ...|.+++|+ |++. + |++++.||.|++||+.+
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS---HRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C---EEEEEEETTSCEEEEEEESSSS
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc---eEEEEEeCCCcEEEEeCCcccc
Confidence 99999999999999999887 8899989 5999999999 8887 7 99999999999999987
Q ss_pred ---CCCcc-----eecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccC
Q 048801 362 ---SQYSP-----RIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVED 433 (1715)
Q Consensus 362 ---g~~l~-----~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~ 433 (1715)
+..+. .+.. .......|...|.+++|+|++ +|++|+.||.|++||+.++
T Consensus 161 ~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~---- 217 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQG------------------TVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL---- 217 (397)
T ss_dssp HHHHTTTCCCCEEEEEE------------------EECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT----
T ss_pred ccccceeeccCcceeee------------------eeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC----
Confidence 44332 1100 000113356779999999999 9999999999999999864
Q ss_pred CCCCceeeeeecC---C---CCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC---CeEEEEecC
Q 048801 434 SEQPIHELDVLSG---H---ENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD---GSAIIWIPR 504 (1715)
Q Consensus 434 ~~~~~~~l~~l~g---H---~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D---GsIrIWDl~ 504 (1715)
..+..+.. | ...|.+++|+|++ .+|++++.| |.|++||+.
T Consensus 218 -----~~~~~~~~~~~h~~~~~~i~~i~~~~~~--------------------------~~l~~~~~d~~~g~i~i~d~~ 266 (397)
T 1sq9_A 218 -----RPLYNFESQHSMINNSNSIRSVKFSPQG--------------------------SLLAIAHDSNSFGCITLYETE 266 (397)
T ss_dssp -----EEEEEEECCC---CCCCCEEEEEECSST--------------------------TEEEEEEEETTEEEEEEEETT
T ss_pred -----ceeEEEeccccccccCCccceEEECCCC--------------------------CEEEEEecCCCCceEEEEECC
Confidence 34566677 8 9999999999986 799999999 999999998
Q ss_pred CCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe
Q 048801 505 SRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT 584 (1715)
Q Consensus 505 t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~ 584 (1715)
+++....+.. +. ...........|...|.+++|+|++++|++++.||.|+|||+.+++++..+.
T Consensus 267 ~~~~~~~~~~---------~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 267 FGERIGSLSV---------PT-------HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp TCCEEEEECB---------C---------------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CCcccceecc---------Cc-------ccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 7543222100 00 0000011122377899999999999999999999999999999999999999
Q ss_pred ------cC---------------CCCeEEEEEccCCC---------cEEEEEeCCCcEEEEECCCCc
Q 048801 585 ------GH---------------SASSYVLDVHPFNP---------RIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 585 ------gH---------------~~~V~sLafSP~dg---------~lLaSgs~DGtI~VWDl~tgk 621 (1715)
+| ...|++++|+|++. .+|++|+.||.|+||++.+|+
T Consensus 331 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 331 MHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp CCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 88 99999999999432 799999999999999998764
No 47
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-33 Score=330.65 Aligned_cols=304 Identities=15% Similarity=0.165 Sum_probs=263.1
Q ss_pred cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEE
Q 048801 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVr 355 (1715)
.....+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+..+.+|...|++++|+|++. +|++++.||.|+
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~s~~~dg~i~ 99 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK---YCVTGSADYSIK 99 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS---EEEEEETTTEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCC---EEEEEeCCCeEE
Confidence 34456899999999999999999999999999999999999999999999999999999999987 899999999999
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC-----CeEEEEeCCCCC
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD-----TFARVWSACKSS 430 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D-----G~IrVWDl~t~~ 430 (1715)
+||+.+++.+..+. +...|.+++|+|++.+|++++.+ |.|++|++....
T Consensus 100 iwd~~~~~~~~~~~--------------------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~ 153 (369)
T 3zwl_B 100 LWDVSNGQCVATWK--------------------------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDS 153 (369)
T ss_dssp EEETTTCCEEEEEE--------------------------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECT
T ss_pred EEECCCCcEEEEee--------------------------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCc
Confidence 99999887655542 24569999999999999999998 999999998754
Q ss_pred ccCCCC--CceeeeeecCCCC--CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCC
Q 048801 431 VEDSEQ--PIHELDVLSGHEN--DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 506 (1715)
Q Consensus 431 ~~~~~~--~~~~l~~l~gH~~--~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~ 506 (1715)
...... ....+..+..|.. .+.+++|+|++ ..|++++.||.|++||+.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~l~~~~~dg~i~i~d~~~~ 207 (369)
T 3zwl_B 154 ATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG--------------------------KYIIAGHKDGKISKYDVSNN 207 (369)
T ss_dssp TTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG--------------------------CEEEEEETTSEEEEEETTTT
T ss_pred cceeecccccceeeeccCCcCccceeEEEEcCCC--------------------------CEEEEEcCCCEEEEEECCCC
Confidence 311110 1123345556666 99999999986 79999999999999999852
Q ss_pred ccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecC
Q 048801 507 RSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH 586 (1715)
Q Consensus 507 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH 586 (1715)
. .....+..|...|.+++|+|++.+|++++.|+.|++||+.+++.+..+. +
T Consensus 208 ~----------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~ 258 (369)
T 3zwl_B 208 Y----------------------------EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-T 258 (369)
T ss_dssp T----------------------------EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-C
T ss_pred c----------------------------EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-C
Confidence 1 1233455678899999999999999999999999999999999999888 7
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCC--------------cEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCC
Q 048801 587 SASSYVLDVHPFNPRIAMSAGYDG--------------RTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVG 652 (1715)
Q Consensus 587 ~~~V~sLafSP~dg~lLaSgs~DG--------------tI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG 652 (1715)
...+.+++|+| ++.++++++.++ .|++||+.+++++..+.+|...|.+++|+|+|++|++++.||
T Consensus 259 ~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 337 (369)
T 3zwl_B 259 DCPLNTAVITP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDG 337 (369)
T ss_dssp SSCEEEEEECS-SSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCceeEEecC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCC
Confidence 78899999999 777888888887 899999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCcc
Q 048801 653 QIYLLNTGQGES 664 (1715)
Q Consensus 653 ~I~IWdl~tGe~ 664 (1715)
.|+||++..+..
T Consensus 338 ~v~iw~~~~~~~ 349 (369)
T 3zwl_B 338 FIRLHHFEKSYF 349 (369)
T ss_dssp EEEEEEECHHHH
T ss_pred eEEEEECccccc
Confidence 999999987643
No 48
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.9e-33 Score=346.27 Aligned_cols=285 Identities=22% Similarity=0.392 Sum_probs=248.8
Q ss_pred CCCCCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 048801 189 HMQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVK 268 (1715)
Q Consensus 189 ~~~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIr 268 (1715)
..|...|.++.|.+.+..+. ++..+.....|.+.+.+.+.+|.+|.+.|++++|+|+|++|++|+.||+|+
T Consensus 105 ~gh~~~V~~~~~~p~~~~l~---------s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~ 175 (410)
T 1vyh_C 105 SGHRSPVTRVIFHPVFSVMV---------SASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175 (410)
T ss_dssp ECCSSCEEEEEECSSSSEEE---------EEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred cccCCcEEEEEEcCCCCEEE---------EEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 35678889999887764433 333344444556667788899999999999999999999999999999999
Q ss_pred EEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEe
Q 048801 269 IWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS 348 (1715)
Q Consensus 269 IWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSg 348 (1715)
|||+.+++++.++.+|...|.+++|+|++.+|++|+.|++|++||+.++.++..+.+|...|.+++|+|++. +|++|
T Consensus 176 iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~---~l~s~ 252 (410)
T 1vyh_C 176 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT---LIASC 252 (410)
T ss_dssp EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS---EEEEE
T ss_pred EEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC---EEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988 89999
Q ss_pred cCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC--------------------
Q 048801 349 SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN-------------------- 408 (1715)
Q Consensus 349 S~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd-------------------- 408 (1715)
+.||+|++||+.++.....+ ..|...|.+++|+|+
T Consensus 253 s~D~~v~vwd~~~~~~~~~~-------------------------~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (410)
T 1vyh_C 253 SNDQTVRVWVVATKECKAEL-------------------------REHRHVVECISWAPESSYSSISEATGSETKKSGKP 307 (410)
T ss_dssp ETTSCEEEEETTTCCEEEEE-------------------------CCCSSCEEEEEECCSCGGGGGGGCCSCC-------
T ss_pred cCCCeEEEEECCCCceeeEe-------------------------cCCCceEEEEEEcCcccccchhhhccccccccCCC
Confidence 99999999999887654433 234667999999986
Q ss_pred CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCce
Q 048801 409 GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN 488 (1715)
Q Consensus 409 G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~ 488 (1715)
|.+|++|+.|+.|++||+.++ .++..+.+|...|.+++|+|++ .+
T Consensus 308 g~~l~sgs~D~~i~iwd~~~~---------~~~~~~~~h~~~v~~v~~~~~g--------------------------~~ 352 (410)
T 1vyh_C 308 GPFLLSGSRDKTIKMWDVSTG---------MCLMTLVGHDNWVRGVLFHSGG--------------------------KF 352 (410)
T ss_dssp CCEEEEEETTSEEEEEETTTT---------EEEEEEECCSSCEEEEEECSSS--------------------------SC
T ss_pred CCEEEEEeCCCeEEEEECCCC---------ceEEEEECCCCcEEEEEEcCCC--------------------------CE
Confidence 678999999999999999874 4577888999999999999986 79
Q ss_pred EEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCe
Q 048801 489 IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCR 568 (1715)
Q Consensus 489 LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGt 568 (1715)
|++|+.||+|++||+.+++ ....+.+|...|++++|+|++.+|++|+.|++
T Consensus 353 l~s~s~D~~i~vwd~~~~~-----------------------------~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~ 403 (410)
T 1vyh_C 353 ILSCADDKTLRVWDYKNKR-----------------------------CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT 403 (410)
T ss_dssp EEEEETTTEEEEECCTTSC-----------------------------CCEEEECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred EEEEeCCCeEEEEECCCCc-----------------------------eEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence 9999999999999987533 33456678889999999999999999999999
Q ss_pred EEEEEC
Q 048801 569 ICVWNA 574 (1715)
Q Consensus 569 I~IWDl 574 (1715)
|+||++
T Consensus 404 i~vW~~ 409 (410)
T 1vyh_C 404 VKVWEC 409 (410)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999986
No 49
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-33 Score=339.18 Aligned_cols=304 Identities=16% Similarity=0.295 Sum_probs=247.9
Q ss_pred CCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCC-EEEEEeCCCeeEEEEC----CCCC------ceEEEeC-------
Q 048801 264 DRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNT-LVASASNDFVIRVWRL----PDGL------PISVLRG------- 325 (1715)
Q Consensus 264 DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~-lLASGS~DGtIrVWDl----~tg~------~l~~L~g------- 325 (1715)
...+.+|++...........|.+.|++++|+|++. +||+|+.||.|+||++ .++. ....+..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 1r5m_A 24 NSIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSAS 103 (425)
T ss_dssp ----------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC--
T ss_pred ccccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccc
Confidence 34566888876665555566779999999999999 9999999999999999 8888 4555554
Q ss_pred ---CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeE
Q 048801 326 ---HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILC 402 (1715)
Q Consensus 326 ---H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vts 402 (1715)
|.+.|++++|+|++. +|++++.||.|++|| .++..+..+ ..|...|.+
T Consensus 104 ~~~~~~~v~~~~~s~~~~---~l~~~~~dg~i~i~~-~~~~~~~~~-------------------------~~~~~~v~~ 154 (425)
T 1r5m_A 104 SGKTTNQVTCLAWSHDGN---SIVTGVENGELRLWN-KTGALLNVL-------------------------NFHRAPIVS 154 (425)
T ss_dssp ----CBCEEEEEECTTSS---EEEEEETTSCEEEEE-TTSCEEEEE-------------------------CCCCSCEEE
T ss_pred ccCCCCceEEEEEcCCCC---EEEEEeCCCeEEEEe-CCCCeeeec-------------------------cCCCccEEE
Confidence 688999999999987 899999999999999 344333222 235677999
Q ss_pred EEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCC---------------eeEEEEccCcccccccc
Q 048801 403 CAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEND---------------VNYVQFSGCAVASRSAM 467 (1715)
Q Consensus 403 lafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~---------------V~sLafspdg~as~~~~ 467 (1715)
++|+|++.+|++++.||.|++||+.++. .+..+..+... +.+++|+++
T Consensus 155 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 217 (425)
T 1r5m_A 155 VKWNKDGTHIISMDVENVTILWNVISGT---------VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-------- 217 (425)
T ss_dssp EEECTTSSEEEEEETTCCEEEEETTTTE---------EEEEECCC---------------CCCBSCCEEEET--------
T ss_pred EEECCCCCEEEEEecCCeEEEEECCCCc---------EEEEeeccccCccceeeccccCCcceeeEEEEcCC--------
Confidence 9999999999999999999999997643 34455555554 777788775
Q ss_pred cccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCC
Q 048801 468 SDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG 547 (1715)
Q Consensus 468 ~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~ 547 (1715)
..+++++.||.|++||+.++. ....+..|...
T Consensus 218 -------------------~~~~~~~~~g~i~~~d~~~~~-----------------------------~~~~~~~~~~~ 249 (425)
T 1r5m_A 218 -------------------DKFVIPGPKGAIFVYQITEKT-----------------------------PTGKLIGHHGP 249 (425)
T ss_dssp -------------------TEEEEECGGGCEEEEETTCSS-----------------------------CSEEECCCSSC
T ss_pred -------------------CEEEEEcCCCeEEEEEcCCCc-----------------------------eeeeeccCCCc
Confidence 479999999999999998633 23345567889
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE
Q 048801 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 548 VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~ 627 (1715)
|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+| ++ ++++++.||.|++||+.+++++..+.
T Consensus 250 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~~~~ 327 (425)
T 1r5m_A 250 ISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQNTLLALSI 327 (425)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEET-TT-EEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred eEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECC-CC-EEEEEeCCCcEEEEECCCCcEeEecc
Confidence 99999999999999999999999999999999999999999999999999 55 88999999999999999999999999
Q ss_pred cccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 048801 628 IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 628 ~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe 663 (1715)
.|...|.+++|+|+|++|++++.||.|+||++.+++
T Consensus 328 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 328 VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 899999999999999999999999999999998776
No 50
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.4e-33 Score=365.60 Aligned_cols=294 Identities=22% Similarity=0.342 Sum_probs=248.2
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCC-----CcEEEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSG-RFVITGSDDRLVKIWSMET-----AFCLASCRGHEGDITDLAVSSNNTLVASASND 306 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG-~~LaTGS~DGtIrIWDl~t-----gk~l~tL~gHs~~VtsLafSpDg~lLASGS~D 306 (1715)
+.....|++|.+.|+||+|++++ .+|+||+.||+|+||++.+ +.....+.+|...|++++|+|++++|++|+.|
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D 451 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 451 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 45566799999999999999875 7999999999999999875 34567899999999999999999999999999
Q ss_pred CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 307 GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
|+|+|||+.++..+..+.+|...|++++|+|++. +|++++.|++|++||+...... .+.
T Consensus 452 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~---~l~s~s~D~~i~iwd~~~~~~~-~~~----------------- 510 (694)
T 3dm0_A 452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR---QIVSASRDRTIKLWNTLGECKY-TIS----------------- 510 (694)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS---CEEEEETTSCEEEECTTSCEEE-EEC-----------------
T ss_pred CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCC---EEEEEeCCCEEEEEECCCCcce-eec-----------------
Confidence 9999999999999999999999999999999988 7999999999999997543211 110
Q ss_pred CCCCCCCCCCCcceeEEEEccCC--CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccc
Q 048801 387 NGPSSSNGLQSHQILCCAYNANG--TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASR 464 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSpdG--~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~ 464 (1715)
.....|...|.|++|+|++ ..|++|+.|+.|+|||+.+. .....+.+|.+.|.+++|+|++
T Consensus 511 ----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~---------~~~~~~~~h~~~v~~v~~spdg---- 573 (694)
T 3dm0_A 511 ----EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC---------KLRSTLAGHTGYVSTVAVSPDG---- 573 (694)
T ss_dssp ----SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTS----
T ss_pred ----cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC---------cEEEEEcCCCCCEEEEEEeCCC----
Confidence 0113467779999999987 58999999999999999864 3467788999999999999986
Q ss_pred ccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCC
Q 048801 465 SAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPT 544 (1715)
Q Consensus 465 ~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h 544 (1715)
.+|++|+.||+|++||+.+++.+.. ..+
T Consensus 574 ----------------------~~l~sg~~Dg~i~iwd~~~~~~~~~------------------------------~~~ 601 (694)
T 3dm0_A 574 ----------------------SLCASGGKDGVVLLWDLAEGKKLYS------------------------------LEA 601 (694)
T ss_dssp ----------------------SEEEEEETTSBCEEEETTTTEEEEC------------------------------CBC
T ss_pred ----------------------CEEEEEeCCCeEEEEECCCCceEEE------------------------------ecC
Confidence 7999999999999999987542111 112
Q ss_pred CCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCC-------------------CCeEEEEEccCCCcEEEE
Q 048801 545 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHS-------------------ASSYVLDVHPFNPRIAMS 605 (1715)
Q Consensus 545 ~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~-------------------~~V~sLafSP~dg~lLaS 605 (1715)
...|.+++|+|++.+|++++ ++.|+|||+.++..+..+..+. ..+++++|+| ++.+|++
T Consensus 602 ~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp-dg~~l~s 679 (694)
T 3dm0_A 602 NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA-DGSTLFS 679 (694)
T ss_dssp SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECT-TSSEEEE
T ss_pred CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC-CCCEEEE
Confidence 45699999999998888765 5679999999999888775432 1378999999 7889999
Q ss_pred EeCCCcEEEEECC
Q 048801 606 AGYDGRTIVWDIW 618 (1715)
Q Consensus 606 gs~DGtI~VWDl~ 618 (1715)
|+.||+|+||++.
T Consensus 680 gs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 680 GYTDGVIRVWGIG 692 (694)
T ss_dssp EETTSEEEEEEC-
T ss_pred EcCCCeEEEEecc
Confidence 9999999999985
No 51
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.3e-32 Score=319.68 Aligned_cols=320 Identities=13% Similarity=0.220 Sum_probs=259.8
Q ss_pred CCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 048801 192 ADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWS 271 (1715)
Q Consensus 192 ~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWD 271 (1715)
...+..+++.+.|..++....... ...+. .........+.+|...|++++|+|++++|++++ ||.|+||+
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~ 78 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDA--------LIGPG-IPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWD 78 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTS--------SSSTT-CCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEE
T ss_pred CCceeEEEECCCCCEEEeecCCCc--------Eeccc-cCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEE
Confidence 345667778777765543321111 11111 122233334458999999999999999999999 99999999
Q ss_pred CCCCcE---EEEec--CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC--ceEEEeCCCCCeEEEEecCCCCcceE
Q 048801 272 METAFC---LASCR--GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL--PISVLRGHTGAVTAIAFSPRPSAIYQ 344 (1715)
Q Consensus 272 l~tgk~---l~tL~--gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~--~l~~L~gH~~~VtsLafSPdg~~~~~ 344 (1715)
+.++.. +..+. +|...|++++|+|++++|++++.||.|++||+.++. ....+..|...|++++|+|++. +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~ 155 (337)
T 1gxr_A 79 ISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK---V 155 (337)
T ss_dssp TTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS---E
T ss_pred CCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCC---E
Confidence 987653 33333 799999999999999999999999999999999887 5677888999999999999987 8
Q ss_pred EEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEE
Q 048801 345 LLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVW 424 (1715)
Q Consensus 345 LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVW 424 (1715)
|++++.||.|++||+.+++....+ ..|...|.+++|+|++.+|++++.||.|++|
T Consensus 156 l~~~~~dg~v~~~d~~~~~~~~~~-------------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~ 210 (337)
T 1gxr_A 156 CFSCCSDGNIAVWDLHNQTLVRQF-------------------------QGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210 (337)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEE-------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEEeCCCcEEEEeCCCCceeeee-------------------------ecccCceEEEEECCCCCEEEEEecCCcEEEE
Confidence 999999999999999887654433 1245679999999999999999999999999
Q ss_pred eCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecC
Q 048801 425 SACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPR 504 (1715)
Q Consensus 425 Dl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~ 504 (1715)
|+.+++ .+..+ .+...+.+++|+|++ ..|++++.||.|++||+.
T Consensus 211 d~~~~~---------~~~~~-~~~~~v~~~~~s~~~--------------------------~~l~~~~~~~~i~~~~~~ 254 (337)
T 1gxr_A 211 DLREGR---------QLQQH-DFTSQIFSLGYCPTG--------------------------EWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp ETTTTE---------EEEEE-ECSSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEETT
T ss_pred ECCCCc---------eEeee-cCCCceEEEEECCCC--------------------------CEEEEEcCCCcEEEEECC
Confidence 998753 23333 467789999999986 799999999999999998
Q ss_pred CCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe
Q 048801 505 SRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT 584 (1715)
Q Consensus 505 t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~ 584 (1715)
+.. ...+..|...|.+++|+|++++|++++.||.|++|++.+++.+.. .
T Consensus 255 ~~~------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~ 303 (337)
T 1gxr_A 255 KPD------------------------------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-S 303 (337)
T ss_dssp SSC------------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-E
T ss_pred CCC------------------------------eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-e
Confidence 632 123456778899999999999999999999999999999988855 4
Q ss_pred cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 585 GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 585 gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
.|...|.+++|+| ++.+|++++.||.|++|++
T Consensus 304 ~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 304 KESSSVLSCDISV-DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ECSSCEEEEEECT-TSCEEEEEETTSCEEEEEE
T ss_pred cCCCcEEEEEECC-CCCEEEEecCCCeEEEEEE
Confidence 5888999999999 7788999999999999996
No 52
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.8e-33 Score=336.11 Aligned_cols=303 Identities=16% Similarity=0.165 Sum_probs=251.7
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--EEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF--CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD 316 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk--~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t 316 (1715)
+..|.++|++++|+|+|++||+|+.||.|+|||+.+++ .+..+.+|...|++++|+|++++|++++.||.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 55699999999999999999999999999999999987 8899999999999999999999999999999999999988
Q ss_pred CCceEE--EeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 317 GLPISV--LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 317 g~~l~~--L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
+..... +..|...|++++|+|++. +|++++.||.|++||+..+........ ...
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~v~i~d~~~~~~~~~~~~---------------------~~~ 139 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEK---KFAVGSGSRVISICYFEQENDWWVCKH---------------------IKK 139 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSS---EEEEEETTSSEEEEEEETTTTEEEEEE---------------------ECT
T ss_pred CeeeeeEEeecCCCceeEEEECCCCC---EEEEEeCCCEEEEEEecCCCcceeeee---------------------eec
Confidence 875444 367999999999999987 899999999999999987653111100 012
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCC---------CCCceeeeeecCCCCCeeEEEEccCcccccc
Q 048801 395 LQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDS---------EQPIHELDVLSGHENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~---------~~~~~~l~~l~gH~~~V~sLafspdg~as~~ 465 (1715)
.|...|.+++|+|++.+|++|+.||.|++||+........ ......+..+.+|...|.+++|+|++
T Consensus 140 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----- 214 (372)
T 1k8k_C 140 PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG----- 214 (372)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-----
T ss_pred ccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC-----
Confidence 3466799999999999999999999999999753321110 11234567778999999999999986
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~ 545 (1715)
..|++++.||.|++||+.+++ .+..+..|.
T Consensus 215 ---------------------~~l~~~~~d~~i~i~d~~~~~-----------------------------~~~~~~~~~ 244 (372)
T 1k8k_C 215 ---------------------SRVAWVSHDSTVCLADADKKM-----------------------------AVATLASET 244 (372)
T ss_dssp ---------------------SEEEEEETTTEEEEEEGGGTT-----------------------------EEEEEECSS
T ss_pred ---------------------CEEEEEeCCCEEEEEECCCCc-----------------------------eeEEEccCC
Confidence 799999999999999998643 233445677
Q ss_pred CCeeEEEeCCCCCEEEEEecCCeEEEEECCC--Cce--------------------------------E------EEE-e
Q 048801 546 RGVNMIVWSLDNRFVLAAIMDCRICVWNAVD--GSL--------------------------------V------HSL-T 584 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~DGtI~IWDl~s--g~~--------------------------------l------~tL-~ 584 (1715)
..|.+++|+|++.+|++| .|+.|++|++.+ +.. . ..+ .
T Consensus 245 ~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (372)
T 1k8k_C 245 LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS 323 (372)
T ss_dssp CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSS
T ss_pred CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccc
Confidence 789999999999988887 899999999987 421 0 223 4
Q ss_pred cCCCCeEEEEEccCCC---cEEEEEeCCCcEEEEECCCCc
Q 048801 585 GHSASSYVLDVHPFNP---RIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 585 gH~~~V~sLafSP~dg---~lLaSgs~DGtI~VWDl~tgk 621 (1715)
+|...|++++|++.++ .+|+||+.||.|+||++.+++
T Consensus 324 ~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 324 LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp SSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 8999999999887577 899999999999999987654
No 53
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=331.76 Aligned_cols=351 Identities=14% Similarity=0.174 Sum_probs=250.0
Q ss_pred cccceeEEEEcCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcEEEEec-------------CCCCCeEEEEECC
Q 048801 230 VQKMQNIKKLRGHRDAVYCAIFDR-SGRFVITGSDDRLVKIWSMETAFCLASCR-------------GHEGDITDLAVSS 295 (1715)
Q Consensus 230 ~~~~k~l~~L~GH~~~Vt~VafSp-DG~~LaTGS~DGtIrIWDl~tgk~l~tL~-------------gHs~~VtsLafSp 295 (1715)
+...+....+.+|.+.|++++|+| ++++||+|+.||.|+||++.++.....+. +|...|++++|+|
T Consensus 30 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 109 (408)
T 4a11_B 30 LELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYP 109 (408)
T ss_dssp EEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECT
T ss_pred cccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEcc
Confidence 344566778899999999999999 99999999999999999999876554432 6999999999999
Q ss_pred -CCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCC
Q 048801 296 -NNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPP 374 (1715)
Q Consensus 296 -Dg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~ 374 (1715)
++.+|++++.||.|++||+.++..+..+. +...+.+++|++.+....+|++++.||.|++||+.++..+..+
T Consensus 110 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~------ 182 (408)
T 4a11_B 110 HDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL------ 182 (408)
T ss_dssp TCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE------
T ss_pred CCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee------
Confidence 78899999999999999999999888887 7889999999997644448999999999999999887654433
Q ss_pred CCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCC-------CCCceeeeeecC
Q 048801 375 DAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDS-------EQPIHELDVLSG 446 (1715)
Q Consensus 375 ~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~-------~~~~~~l~~l~g 446 (1715)
..|...|.+++|+|++. +|++|+.||.|++||+.+...... ...........+
T Consensus 183 -------------------~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (408)
T 4a11_B 183 -------------------QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTA 243 (408)
T ss_dssp -------------------CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCS
T ss_pred -------------------cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccccc
Confidence 23566799999999998 589999999999999986531000 001111223367
Q ss_pred CCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCC
Q 048801 447 HENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPP 526 (1715)
Q Consensus 447 H~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~ 526 (1715)
|...|.+++|+|++ ..|++++.||.|++||+.++........
T Consensus 244 ~~~~v~~~~~~~~~--------------------------~~l~~~~~dg~i~vwd~~~~~~~~~~~~------------ 285 (408)
T 4a11_B 244 HNGKVNGLCFTSDG--------------------------LHLLTVGTDNRMRLWNSSNGENTLVNYG------------ 285 (408)
T ss_dssp CSSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEETTTCCBCCCCCC------------
T ss_pred ccCceeEEEEcCCC--------------------------CEEEEecCCCeEEEEECCCCccceeccc------------
Confidence 89999999999986 7999999999999999987553211100
Q ss_pred CCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEE
Q 048801 527 PLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSA 606 (1715)
Q Consensus 527 ~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSg 606 (1715)
.........+........+..+++++.++.|++||+.+++++..+.+|...|++++|+| ++.+|++|
T Consensus 286 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~ 352 (408)
T 4a11_B 286 ------------KVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSG 352 (408)
T ss_dssp ------------CCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEE
T ss_pred ------------cccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEE
Confidence 00001111222233344556677788899999999999999999999999999999999 77899999
Q ss_pred eCCCcEEEEECCCCceEEEEEcccceEEEEEEcC-CCCEEEEEeCCCeEEEEECC
Q 048801 607 GYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSP-DGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 607 s~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSP-DG~~LAsgs~DG~I~IWdl~ 660 (1715)
+.||.|+|||+.+++++........ ...+.+ +...+.+++.++.+.+|+..
T Consensus 353 ~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 353 SRDCNILAWVPSLYEPVPDDDETTT---KSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ETTSCEEEEEECC------------------------------------------
T ss_pred CCCCeEEEEeCCCCCccCCCCceEe---ccccccccceeecccCccCceeecCCc
Confidence 9999999999999988776553221 123333 33345567788999999864
No 54
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=319.88 Aligned_cols=294 Identities=19% Similarity=0.237 Sum_probs=252.2
Q ss_pred ccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeE
Q 048801 231 QKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIR 310 (1715)
Q Consensus 231 ~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIr 310 (1715)
...+.+++|.+|.+.|++++| +++.+|++|+.||.|+|||+.++.....+..|...|.+++|+|++.+|++|+.||.|+
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN 84 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred ccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence 356788999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCC---CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 311 VWRLPDG---LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 311 VWDl~tg---~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
+|++... ..+..+.+|...|.+++|. +. +|++++.||.|++|| .+.....+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~---~l~~~~~d~~i~~~d--~~~~~~~~------------------- 138 (313)
T 3odt_A 85 GVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DG---VVISGSWDKTAKVWK--EGSLVYNL------------------- 138 (313)
T ss_dssp EEETTCCTTSCC-CEECCCSSCEEEEEEE--TT---EEEEEETTSEEEEEE--TTEEEEEE-------------------
T ss_pred EEEeeecCCCCcccchhhcccCEEEEEec--CC---EEEEEeCCCCEEEEc--CCcEEEec-------------------
Confidence 9998754 6678889999999999993 34 899999999999999 33322222
Q ss_pred CCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecC-CCCCeeEEEEccCcccccc
Q 048801 388 GPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSG-HENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~g-H~~~V~sLafspdg~as~~ 465 (1715)
..|...|.+++|++ ++.+|++++.||.|++||.. .....+.. |...|.+++|+|++
T Consensus 139 ------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-----------~~~~~~~~~~~~~i~~~~~~~~~----- 196 (313)
T 3odt_A 139 ------QAHNASVWDAKVVSFSENKFLTASADKTIKLWQND-----------KVIKTFSGIHNDVVRHLAVVDDG----- 196 (313)
T ss_dssp ------ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT-----------EEEEEECSSCSSCEEEEEEEETT-----
T ss_pred ------ccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC-----------ceEEEEeccCcccEEEEEEcCCC-----
Confidence 23466799999998 89999999999999999943 23455566 88999999999975
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~ 545 (1715)
.+++++.||.|++||+++++ ....+..|.
T Consensus 197 ----------------------~~~~~~~dg~i~i~d~~~~~-----------------------------~~~~~~~~~ 225 (313)
T 3odt_A 197 ----------------------HFISCSNDGLIKLVDMHTGD-----------------------------VLRTYEGHE 225 (313)
T ss_dssp ----------------------EEEEEETTSEEEEEETTTCC-----------------------------EEEEEECCS
T ss_pred ----------------------eEEEccCCCeEEEEECCchh-----------------------------hhhhhhcCC
Confidence 49999999999999998643 233455688
Q ss_pred CCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEE
Q 048801 546 RGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRI 625 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~t 625 (1715)
..|++++|+|++ .|++++.||.|++||+.+++++..+..|...|.+++|+| ++. +++++.||.|++||+.+++.+..
T Consensus 226 ~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 226 SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS-NGD-IIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECT-TSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEcc-CCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence 899999999999 688999999999999999999999999999999999999 555 55789999999999998876654
Q ss_pred EE
Q 048801 626 YE 627 (1715)
Q Consensus 626 l~ 627 (1715)
..
T Consensus 303 ~~ 304 (313)
T 3odt_A 303 DE 304 (313)
T ss_dssp --
T ss_pred hh
Confidence 43
No 55
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=8.1e-33 Score=328.11 Aligned_cols=303 Identities=16% Similarity=0.201 Sum_probs=243.3
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEE-EEEeC---CCcEEEEeCCCCcEEEEe-cCCCCCeEEEEECCC---CCEEEEEeCCC
Q 048801 236 IKKLRGHRDAVYCAIFDRSGRFV-ITGSD---DRLVKIWSMETAFCLASC-RGHEGDITDLAVSSN---NTLVASASNDF 307 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpDG~~L-aTGS~---DGtIrIWDl~tgk~l~tL-~gHs~~VtsLafSpD---g~lLASGS~DG 307 (1715)
...+.+|...|++++|+|++..| ++|+. ||.|+||++.+++..... .+|...|++++|+|+ +.+|++|+.||
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 34568899999999999999655 56665 999999999998876543 379999999999998 69999999999
Q ss_pred eeEEEECCCCC-ceEEEeCCCCCeEEEEe------cCCCCcceEEEEecCCCcEEEEecCCCC-CcceecCCCCCCCccC
Q 048801 308 VIRVWRLPDGL-PISVLRGHTGAVTAIAF------SPRPSAIYQLLSSSDDGTCRIWDARYSQ-YSPRIYLPKPPDAITG 379 (1715)
Q Consensus 308 tIrVWDl~tg~-~l~~L~gH~~~VtsLaf------SPdg~~~~~LaSgS~DGtVrIWDl~tg~-~l~~i~~~~~~~~i~g 379 (1715)
.|++||+.++. ++..+.+|...|.+++| +|++. +|++++.||.|++||+.++. ....+...
T Consensus 91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~---~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-------- 159 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP---EIVTGSRDGTVKVWDPRQKDDPVANMEPV-------- 159 (357)
T ss_dssp CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC---EEEEEETTSCEEEECTTSCSSCSEEECCC--------
T ss_pred eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc---EEEEEeCCCeEEEEeCCCCCCcceecccc--------
Confidence 99999999988 89999999999999955 67776 89999999999999998876 33322110
Q ss_pred ccCCCCCCCCCCCCCCCCcceeEEE----EccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEE
Q 048801 380 KSNVPSNNGPSSSNGLQSHQILCCA----YNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQ 455 (1715)
Q Consensus 380 ~~~~~~~~~~~~~~~~h~~~Vtsla----fSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLa 455 (1715)
.......|.+++ |++++.+|++|+.||.|++||+.++. ......|...|.+++
T Consensus 160 -------------~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----------~~~~~~~~~~v~~~~ 216 (357)
T 3i2n_A 160 -------------QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA----------LRWETNIKNGVCSLE 216 (357)
T ss_dssp -------------TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE----------EEEEEECSSCEEEEE
T ss_pred -------------CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc----------eeeecCCCCceEEEE
Confidence 011134588888 78899999999999999999998743 233467888999999
Q ss_pred Ecc---CcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCC
Q 048801 456 FSG---CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQP 532 (1715)
Q Consensus 456 fsp---dg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~ 532 (1715)
|+| ++ ..|++++.||.|++||++++......
T Consensus 217 ~~~~~~~~--------------------------~~l~~~~~dg~i~i~d~~~~~~~~~~-------------------- 250 (357)
T 3i2n_A 217 FDRKDISM--------------------------NKLVATSLEGKFHVFDMRTQHPTKGF-------------------- 250 (357)
T ss_dssp ESCSSSSC--------------------------CEEEEEESTTEEEEEEEEEEETTTEE--------------------
T ss_pred cCCCCCCC--------------------------CEEEEECCCCeEEEEeCcCCCcccce--------------------
Confidence 998 54 78999999999999999864422111
Q ss_pred CCCCCcccccCCCCCeeEEEeCCCCC-EEEEEecCCeEEEEECCCC-------------------ceEEEEecCCCCeEE
Q 048801 533 PRGGPRQRLLPTPRGVNMIVWSLDNR-FVLAAIMDCRICVWNAVDG-------------------SLVHSLTGHSASSYV 592 (1715)
Q Consensus 533 ~~g~~~~~l~~h~~~VtslafSPDG~-~LaTgs~DGtI~IWDl~sg-------------------~~l~tL~gH~~~V~s 592 (1715)
.......|...|++++|+|++. +|++|+.||.|+|||+.++ +.+..+.+|...|++
T Consensus 251 ----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~ 326 (357)
T 3i2n_A 251 ----ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISS 326 (357)
T ss_dssp ----EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEE
T ss_pred ----eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeE
Confidence 0012336888999999999999 8999999999999999754 467788999999999
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEECCCCce
Q 048801 593 LDVHPFNPRIAMSAGYDGRTIVWDIWEGTP 622 (1715)
Q Consensus 593 LafSP~dg~lLaSgs~DGtI~VWDl~tgk~ 622 (1715)
++|+|++..++++++.||.|+|||+.+.+.
T Consensus 327 ~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 327 LDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred EEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 999995555555899999999999987654
No 56
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1e-32 Score=333.58 Aligned_cols=296 Identities=16% Similarity=0.141 Sum_probs=251.5
Q ss_pred EEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC------ceEEEeCCCCCeEEEEecCC----C---Ccce
Q 048801 277 CLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL------PISVLRGHTGAVTAIAFSPR----P---SAIY 343 (1715)
Q Consensus 277 ~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~------~l~~L~gH~~~VtsLafSPd----g---~~~~ 343 (1715)
....+.+|.+.|++++|+| .+|++|+.||.|+||++.++. .+..+.+|...|++++|+|+ + .
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~--- 82 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC--- 82 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE---
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc---
Confidence 4566789999999999998 799999999999999999988 78899999999999999998 7 6
Q ss_pred EEEEecCCCcEEEEecCCCCC-----cceecCCCCCCCccCccCCCCCCCCCCCCCCC-----CcceeEEEEc----cCC
Q 048801 344 QLLSSSDDGTCRIWDARYSQY-----SPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ-----SHQILCCAYN----ANG 409 (1715)
Q Consensus 344 ~LaSgS~DGtVrIWDl~tg~~-----l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h-----~~~VtslafS----pdG 409 (1715)
+|++++.||.|++||+.++.. ...+ ..| ...|.+++|+ |++
T Consensus 83 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~v~~~~~~~~~~~~~ 137 (397)
T 1sq9_A 83 LVATTSFSGDLLFYRITREDETKKVIFEKL-------------------------DLLDSDMKKHSFWALKWGASNDRLL 137 (397)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCCEEEEEE-------------------------CCSCTTGGGSCEEEEEEECCC----
T ss_pred EEEEEcCCCCEEEEEccCCcccccccceee-------------------------cccccccCCCcEEEEEEeeccCCCC
Confidence 899999999999999987764 2222 112 4679999999 999
Q ss_pred Ce-EEEecCCCeEEEEeCCC------CCccCCCCCceeeeee-------cCCCCCeeEEEEccCcccccccccccccccc
Q 048801 410 TV-FVTGSSDTFARVWSACK------SSVEDSEQPIHELDVL-------SGHENDVNYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 410 ~~-LatGs~DG~IrVWDl~t------~~~~~~~~~~~~l~~l-------~gH~~~V~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
.+ |++|+.||.|++||+.+ +.... ......+ ..|...|.+++|+|+
T Consensus 138 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------- 197 (397)
T 1sq9_A 138 SHRLVATDVKGTTYIWKFHPFADESNSLTLN----WSPTLELQGTVESPMTPSQFATSVDISER---------------- 197 (397)
T ss_dssp CEEEEEEETTSCEEEEEEESSSSHHHHTTTC----CCCEEEEEEEECCSSSSCCCCCEEEECTT----------------
T ss_pred ceEEEEEeCCCcEEEEeCCccccccccceee----ccCcceeeeeeccccCCCCCceEEEECCC----------------
Confidence 99 99999999999999986 33211 0111134 458889999999986
Q ss_pred cccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccC---C---CCCee
Q 048801 476 VPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLP---T---PRGVN 549 (1715)
Q Consensus 476 ~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~---h---~~~Vt 549 (1715)
. .|++++.||.|++||+++++. ...+.. | ...|.
T Consensus 198 ----------~-~l~~~~~dg~i~i~d~~~~~~-----------------------------~~~~~~~~~h~~~~~~i~ 237 (397)
T 1sq9_A 198 ----------G-LIATGFNNGTVQISELSTLRP-----------------------------LYNFESQHSMINNSNSIR 237 (397)
T ss_dssp ----------S-EEEEECTTSEEEEEETTTTEE-----------------------------EEEEECCC---CCCCCEE
T ss_pred ----------c-eEEEEeCCCcEEEEECCCCce-----------------------------eEEEeccccccccCCccc
Confidence 3 899999999999999986432 122333 6 77899
Q ss_pred EEEeCCCCCEEEEEecC---CeEEEEECCCCceEEEEec-------------CCCCeEEEEEccCCCcEEEEEeCCCcEE
Q 048801 550 MIVWSLDNRFVLAAIMD---CRICVWNAVDGSLVHSLTG-------------HSASSYVLDVHPFNPRIAMSAGYDGRTI 613 (1715)
Q Consensus 550 slafSPDG~~LaTgs~D---GtI~IWDl~sg~~l~tL~g-------------H~~~V~sLafSP~dg~lLaSgs~DGtI~ 613 (1715)
+++|+|++.+|++++.| +.|++||+.+++.+..+.+ |...|.+++|+| ++.+|++++.||.|+
T Consensus 238 ~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 316 (397)
T 1sq9_A 238 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLR 316 (397)
T ss_dssp EEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEE
T ss_pred eEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEE
Confidence 99999999999999999 9999999999999999998 999999999999 778999999999999
Q ss_pred EEECCCCceEEEEE------cc---------------cceEEEEEEcCCC----------CEEEEEeCCCeEEEEECCCC
Q 048801 614 VWDIWEGTPIRIYE------IG---------------RFKLVDGKFSPDG----------TSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 614 VWDl~tgk~l~tl~------~h---------------~~~V~svafSPDG----------~~LAsgs~DG~I~IWdl~tG 662 (1715)
|||+.+++++..+. .| ...|.+++|+|+| .+|++++.||.|+||++.+|
T Consensus 317 iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 317 FWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred EEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 99999999999999 77 8899999999999 79999999999999999877
Q ss_pred c
Q 048801 663 E 663 (1715)
Q Consensus 663 e 663 (1715)
+
T Consensus 397 ~ 397 (397)
T 1sq9_A 397 K 397 (397)
T ss_dssp -
T ss_pred C
Confidence 3
No 57
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-32 Score=317.02 Aligned_cols=293 Identities=17% Similarity=0.242 Sum_probs=253.5
Q ss_pred CcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcE
Q 048801 275 AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354 (1715)
Q Consensus 275 gk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtV 354 (1715)
.+.+.++.+|.+.|++++| +++.+|++|+.||.|+|||+.++.....+..|...|.+++|+|++. +|++++.||.|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~dg~i 83 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKE---LLLFGGKDTMI 83 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTT---EEEEEETTSCE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCC---EEEEecCCCeE
Confidence 3678899999999999999 9999999999999999999999999999999999999999999988 89999999999
Q ss_pred EEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCC
Q 048801 355 RIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDS 434 (1715)
Q Consensus 355 rIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~ 434 (1715)
++|++....... .......|...|.+++| ++.+|++|+.||.|++||.
T Consensus 84 ~~~~~~~~~~~~----------------------~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~-------- 131 (313)
T 3odt_A 84 NGVPLFATSGED----------------------PLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE-------- 131 (313)
T ss_dssp EEEETTCCTTSC----------------------C-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET--------
T ss_pred EEEEeeecCCCC----------------------cccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC--------
Confidence 999987643211 11122346778999999 6789999999999999993
Q ss_pred CCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccc
Q 048801 435 EQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGR 514 (1715)
Q Consensus 435 ~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~ 514 (1715)
...+..+..|...|.++.|.+.. ...|++++.||.|++||...
T Consensus 132 ---~~~~~~~~~~~~~v~~~~~~~~~-------------------------~~~l~~~~~d~~i~i~d~~~--------- 174 (313)
T 3odt_A 132 ---GSLVYNLQAHNASVWDAKVVSFS-------------------------ENKFLTASADKTIKLWQNDK--------- 174 (313)
T ss_dssp ---TEEEEEEECCSSCEEEEEEEETT-------------------------TTEEEEEETTSCEEEEETTE---------
T ss_pred ---CcEEEecccCCCceeEEEEccCC-------------------------CCEEEEEECCCCEEEEecCc---------
Confidence 24567788899999999998822 37999999999999999432
Q ss_pred ccccccccCCCCCCCCCCCCCCCcccccC-CCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEE
Q 048801 515 WTRAYHLKVPPPPLPPQPPRGGPRQRLLP-TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVL 593 (1715)
Q Consensus 515 ~~~~~~l~~~~~~~~~~~~~g~~~~~l~~-h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sL 593 (1715)
....+.. +...|.+++|+|++. |++++.||.|++||+.+++.+..+.+|...|+++
T Consensus 175 ----------------------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~ 231 (313)
T 3odt_A 175 ----------------------VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCI 231 (313)
T ss_dssp ----------------------EEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred ----------------------eEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEE
Confidence 1112223 677899999999998 8999999999999999999999999999999999
Q ss_pred EEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 048801 594 DVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 594 afSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k 666 (1715)
+|+| ++ .|++++.||.|++||+.+++++..+..|...|.+++|+|+|+ |++++.||.|++|++.+++...
T Consensus 232 ~~~~-~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 232 KLLP-NG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp EECT-TS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred EEec-CC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence 9999 44 477999999999999999999999999999999999999998 6679999999999998876543
No 58
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.7e-32 Score=321.47 Aligned_cols=279 Identities=15% Similarity=0.183 Sum_probs=224.1
Q ss_pred cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEE
Q 048801 276 FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVr 355 (1715)
...+++.+|.+.|++++|+|++.+|++|+.||+|+|||+.++..+..+..|...|.+++|+|++. +|++|+.|++|+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~s~s~d~~i~ 80 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN---WIIVGSDDFRIR 80 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGT---EEEEEETTSEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCC---EEEEECCCCEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999988 899999999999
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCC
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSE 435 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~ 435 (1715)
+||+.+++.+..+ ..|...|.+++|+|++.+|++|+.||.|++||+.++.
T Consensus 81 vwd~~~~~~~~~~-------------------------~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~----- 130 (304)
T 2ynn_A 81 VFNYNTGEKVVDF-------------------------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----- 130 (304)
T ss_dssp EEETTTCCEEEEE-------------------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-----
T ss_pred EEECCCCcEEEEE-------------------------eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-----
Confidence 9999988755443 2356779999999999999999999999999986531
Q ss_pred CCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccc
Q 048801 436 QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRW 515 (1715)
Q Consensus 436 ~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~ 515 (1715)
.....+.+|...|.+++|+|.
T Consensus 131 ---~~~~~~~~h~~~v~~v~~~p~-------------------------------------------------------- 151 (304)
T 2ynn_A 131 ---ALEQTFEGHEHFVMCVAFNPK-------------------------------------------------------- 151 (304)
T ss_dssp ---EEEEEECCCCSCEEEEEECTT--------------------------------------------------------
T ss_pred ---chhhhhcccCCcEEEEEECCC--------------------------------------------------------
Confidence 223344445544444444442
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe-cCCCCeEEEE
Q 048801 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT-GHSASSYVLD 594 (1715)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~-gH~~~V~sLa 594 (1715)
++.+|++|+.|++|+|||+.++.....+. +|...|..+.
T Consensus 152 ----------------------------------------~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~ 191 (304)
T 2ynn_A 152 ----------------------------------------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191 (304)
T ss_dssp ----------------------------------------CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEE
T ss_pred ----------------------------------------CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEE
Confidence 34555566666666666655554444443 5667889999
Q ss_pred EccC-CCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccccc----
Q 048801 595 VHPF-NPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKDAK---- 669 (1715)
Q Consensus 595 fSP~-dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~~~---- 669 (1715)
|+|. ++.+|++|+.||+|+|||+.+++++..+.+|...|.+++|+|++.+|++|+.||.|+|||+.+++..+...
T Consensus 192 ~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~ 271 (304)
T 2ynn_A 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE 271 (304)
T ss_dssp ECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSS
T ss_pred EEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCc
Confidence 9874 55799999999999999999999999999999999999999999999999999999999999987764332
Q ss_pred --cceeecCCCcc--EEEcCC
Q 048801 670 --YDQFFLGDYRP--LIRDSL 686 (1715)
Q Consensus 670 --~~~~fs~D~r~--L~~d~~ 686 (1715)
+...|+|++.. |+...+
T Consensus 272 ~~~~~~~~~~~~~~~~asg~~ 292 (304)
T 2ynn_A 272 RSWCIATHPTGRKNYIASGFD 292 (304)
T ss_dssp SEEEEEECTTCGGGCEEEEET
T ss_pred cEEEEEECCCCCceEEEEecC
Confidence 33456666642 444433
No 59
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=6.6e-33 Score=335.29 Aligned_cols=302 Identities=19% Similarity=0.163 Sum_probs=248.0
Q ss_pred EEeCCCCcEEEEecCCCCCeEEEEECCCC-CEEEEEeCCCeeEEEECCCCCceEEEe--CCCCCeEEEEecC-CCCcceE
Q 048801 269 IWSMETAFCLASCRGHEGDITDLAVSSNN-TLVASASNDFVIRVWRLPDGLPISVLR--GHTGAVTAIAFSP-RPSAIYQ 344 (1715)
Q Consensus 269 IWDl~tgk~l~tL~gHs~~VtsLafSpDg-~lLASGS~DGtIrVWDl~tg~~l~~L~--gH~~~VtsLafSP-dg~~~~~ 344 (1715)
+|++........+.+|...|++++|+|++ ++||+|+.||.|+|||+.++.....+. +|...|++++|+| ++. +
T Consensus 57 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~---~ 133 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTN---Q 133 (383)
T ss_dssp HHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEE---E
T ss_pred cccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCC---E
Confidence 44556677788899999999999999999 999999999999999999998887776 6999999999999 444 8
Q ss_pred EEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEE
Q 048801 345 LLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVW 424 (1715)
Q Consensus 345 LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVW 424 (1715)
|++++.|+.|++||+.+.. ...+.. ...+...|.+++|+|++.+|++|+.||.|++|
T Consensus 134 l~s~~~d~~i~iwd~~~~~-~~~~~~----------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 190 (383)
T 3ei3_B 134 LFVSSIRGATTLRDFSGSV-IQVFAK----------------------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLL 190 (383)
T ss_dssp EEEEETTTEEEEEETTSCE-EEEEEC----------------------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred EEEEeCCCEEEEEECCCCc-eEEEec----------------------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEE
Confidence 9999999999999998532 222211 11234669999999999999999999999999
Q ss_pred eCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecC
Q 048801 425 SACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPR 504 (1715)
Q Consensus 425 Dl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~ 504 (1715)
|+.. ..+..+.+|...|.+++|+|++ ...|++++.||.|++||++
T Consensus 191 d~~~----------~~~~~~~~h~~~v~~~~~~~~~-------------------------~~~l~s~~~d~~i~iwd~~ 235 (383)
T 3ei3_B 191 GLDG----------HEIFKEKLHKAKVTHAEFNPRC-------------------------DWLMATSSVDATVKLWDLR 235 (383)
T ss_dssp ETTS----------CEEEEEECSSSCEEEEEECSSC-------------------------TTEEEEEETTSEEEEEEGG
T ss_pred ECCC----------CEEEEeccCCCcEEEEEECCCC-------------------------CCEEEEEeCCCEEEEEeCC
Confidence 9942 3467788999999999999986 2389999999999999998
Q ss_pred CCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CCCEEEEEecCCeEEEEECCCCceEEEE
Q 048801 505 SRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAVDGSLVHSL 583 (1715)
Q Consensus 505 t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~LaTgs~DGtI~IWDl~sg~~l~tL 583 (1715)
+.... ........|...|.+++|+| ++.+|++++.|+.|+|||+.+++.+..+
T Consensus 236 ~~~~~--------------------------~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 289 (383)
T 3ei3_B 236 NIKDK--------------------------NSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQI 289 (383)
T ss_dssp GCCST--------------------------TCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEE
T ss_pred CCCcc--------------------------cceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccc
Confidence 63211 11122235788999999999 9999999999999999999999888877
Q ss_pred ecCC-----------------CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcc--cceEEEEEEcCCCCE
Q 048801 584 TGHS-----------------ASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIG--RFKLVDGKFSPDGTS 644 (1715)
Q Consensus 584 ~gH~-----------------~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h--~~~V~svafSPDG~~ 644 (1715)
.+|. +.+..++|+| ++.+ +|+.||.|+|||+.+++++..+.++ ...+..++|+|+|++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~-dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~ 366 (383)
T 3ei3_B 290 IIHPHRQFQHLTPIKATWHPMYDLIVAGRYP-DDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDV 366 (383)
T ss_dssp EECCBCCCTTSCCCCCEECSSSSEEEEECBC-CTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSE
T ss_pred ccccccccccccceEEeccCCCCceEEEecC-Cccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccE
Confidence 7653 2344466666 3334 6779999999999999999999864 455667799999999
Q ss_pred EEEEeCCCeEEEEECCC
Q 048801 645 IVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 645 LAsgs~DG~I~IWdl~t 661 (1715)
|++++ ||.|+||++.+
T Consensus 367 l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 367 LASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEEE-TTEEEEEECC-
T ss_pred EEEec-CCcEEEEecCC
Confidence 99997 89999999864
No 60
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=8.5e-33 Score=328.59 Aligned_cols=312 Identities=17% Similarity=0.240 Sum_probs=249.8
Q ss_pred EEcCCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEeCCCCcEEEEecC-----CCCCeEEEEECCC----CCEEEEEe
Q 048801 238 KLRGHRDAVYCAIFDRS----GRFVITGSDDRLVKIWSMETAFCLASCRG-----HEGDITDLAVSSN----NTLVASAS 304 (1715)
Q Consensus 238 ~L~GH~~~Vt~VafSpD----G~~LaTGS~DGtIrIWDl~tgk~l~tL~g-----Hs~~VtsLafSpD----g~lLASGS 304 (1715)
.+.+|.+.|++++|+|+ ...+++++.++.|+||++.++..+..+.. |...|++++|+|+ +.+|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 34599999999999984 45566666677999999998887777664 5578999999998 67999999
Q ss_pred CCCeeEEEECCCCCceEEEeCCCCCeEEEEecC-CCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCC
Q 048801 305 NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSP-RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNV 383 (1715)
Q Consensus 305 ~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSP-dg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~ 383 (1715)
.||.|+|||+.+++.+..+.+|...|++++|+| ++. +|++++.||.|++||+.+++....+..
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~------------- 156 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN---LLLSVSKDHALRLWNIQTDTLVAIFGG------------- 156 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTT---EEEEEETTSCEEEEETTTTEEEEEECS-------------
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCC---EEEEEeCCCeEEEEEeecCeEEEEecc-------------
Confidence 999999999999999999999999999999999 666 899999999999999988765544311
Q ss_pred CCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCC-------------------CCceeeeee
Q 048801 384 PSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSE-------------------QPIHELDVL 444 (1715)
Q Consensus 384 ~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~-------------------~~~~~l~~l 444 (1715)
...|...|.+++|+|++.+|++|+.||.|++||+.+++..... .........
T Consensus 157 ---------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T 3k26_A 157 ---------VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 227 (366)
T ss_dssp ---------TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred ---------cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence 1235677999999999999999999999999999865321000 000112334
Q ss_pred cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCC
Q 048801 445 SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVP 524 (1715)
Q Consensus 445 ~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~ 524 (1715)
.+|...|.+++|++ +.|++++.||.|++||+.+........
T Consensus 228 ~~~~~~v~~~~~~~----------------------------~~l~~~~~d~~i~~wd~~~~~~~~~~~----------- 268 (366)
T 3k26_A 228 DIHRNYVDCVRWLG----------------------------DLILSKSCENAIVCWKPGKMEDDIDKI----------- 268 (366)
T ss_dssp SSCSSCCCEEEEET----------------------------TEEEEECSSSEEEEEEESSTTCCGGGC-----------
T ss_pred cCCcceEEEEEEcC----------------------------CEEEEEecCCEEEEEeCCCcccccccc-----------
Confidence 45889999999983 689999999999999998754211110
Q ss_pred CCCCCCCCCCCCCcccccCCCCCeeEEEeCCC--CCEEEEEecCCeEEEEECCCCc----eEEEEecC--CCCeEEEEEc
Q 048801 525 PPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD--NRFVLAAIMDCRICVWNAVDGS----LVHSLTGH--SASSYVLDVH 596 (1715)
Q Consensus 525 ~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD--G~~LaTgs~DGtI~IWDl~sg~----~l~tL~gH--~~~V~sLafS 596 (1715)
............+..|...|.+++|+|+ +++|++|+.||.|+|||+.+++ ....+.+| ...|++++|+
T Consensus 269 ----~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 344 (366)
T 3k26_A 269 ----KPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFS 344 (366)
T ss_dssp ----CTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEEC
T ss_pred ----ccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeC
Confidence 0001111234556678889999999999 9999999999999999999876 44578887 7999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEECC
Q 048801 597 PFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 597 P~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
| ++.+|++|+.||.|+|||+.
T Consensus 345 ~-~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 345 R-DSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp T-TSSEEEEEETTSEEEEEEC-
T ss_pred C-CCCeEEEEeCCCEEEEEEec
Confidence 9 78899999999999999985
No 61
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.3e-32 Score=330.47 Aligned_cols=311 Identities=13% Similarity=0.123 Sum_probs=248.4
Q ss_pred ccceeEEEEcCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCcEEEEec--CCCCCeEEEEECC-CCCEEEEEeCC
Q 048801 231 QKMQNIKKLRGHRDAVYCAIFDRSG-RFVITGSDDRLVKIWSMETAFCLASCR--GHEGDITDLAVSS-NNTLVASASND 306 (1715)
Q Consensus 231 ~~~k~l~~L~GH~~~Vt~VafSpDG-~~LaTGS~DGtIrIWDl~tgk~l~tL~--gHs~~VtsLafSp-Dg~lLASGS~D 306 (1715)
...+....+.+|.+.|++++|+|++ ++||+|+.||.|+|||+.+++....+. +|...|.+++|+| ++.+|++++.|
T Consensus 61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 4567788999999999999999999 999999999999999999888877775 6999999999999 78999999999
Q ss_pred CeeEEEECCCCCceEEEeCC---CCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCC
Q 048801 307 FVIRVWRLPDGLPISVLRGH---TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNV 383 (1715)
Q Consensus 307 GtIrVWDl~tg~~l~~L~gH---~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~ 383 (1715)
+.|++||+.+ ..+..+..| ...|.+++|+|++. +|++++.||.|++||+. ++.+..+
T Consensus 141 ~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~i~d~~-~~~~~~~--------------- 200 (383)
T 3ei3_B 141 GATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ---MLATGDSTGRLLLLGLD-GHEIFKE--------------- 200 (383)
T ss_dssp TEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT---EEEEEETTSEEEEEETT-SCEEEEE---------------
T ss_pred CEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC---EEEEECCCCCEEEEECC-CCEEEEe---------------
Confidence 9999999985 556666544 48899999999988 89999999999999984 3332222
Q ss_pred CCCCCCCCCCCCCCcceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEcc-Ccc
Q 048801 384 PSNNGPSSSNGLQSHQILCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSG-CAV 461 (1715)
Q Consensus 384 ~~~~~~~~~~~~h~~~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafsp-dg~ 461 (1715)
..|...|.+++|+|++. +|++|+.|+.|++||+.+... ....+..+ +|...|.+++|+| ++
T Consensus 201 ----------~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~-~~~~~v~~~~~s~~~~- 263 (383)
T 3ei3_B 201 ----------KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD-----KNSYIAEM-PHEKPVNAAYFNPTDS- 263 (383)
T ss_dssp ----------ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS-----TTCEEEEE-ECSSCEEEEEECTTTS-
T ss_pred ----------ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc-----ccceEEEe-cCCCceEEEEEcCCCC-
Confidence 23567799999999998 999999999999999986421 12233444 6999999999999 76
Q ss_pred cccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccc
Q 048801 462 ASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRL 541 (1715)
Q Consensus 462 as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l 541 (1715)
..|++++.||.|++||+.++.....+........ .....+...
T Consensus 264 -------------------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~------------~~~~~~~~~ 306 (383)
T 3ei3_B 264 -------------------------TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF------------QHLTPIKAT 306 (383)
T ss_dssp -------------------------CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC------------TTSCCCCCE
T ss_pred -------------------------CEEEEEcCCCcEEEEECCCCcccccccccccccc------------ccccceEEe
Confidence 7999999999999999998664433211000000 000011111
Q ss_pred cCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec--CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC
Q 048801 542 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG--HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 542 ~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g--H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t 619 (1715)
......+..++|+|+|++ +|+.|+.|+|||+.+++++..+.+ |...+.+++|+| ++.+|++|+ ||.|+|||+.+
T Consensus 307 ~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 307 WHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred ccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec-CccEEEEec-CCcEEEEecCC
Confidence 122345677888898888 888999999999999999999987 567788889999 778888987 99999999864
No 62
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-34 Score=361.37 Aligned_cols=312 Identities=14% Similarity=0.109 Sum_probs=227.4
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCcEE----EEecCCCCCeEEEEECCC------CCEEEEEeCCCeeEEEECCCCCc--
Q 048801 252 DRSGRFVITGSDDRLVKIWSMETAFCL----ASCRGHEGDITDLAVSSN------NTLVASASNDFVIRVWRLPDGLP-- 319 (1715)
Q Consensus 252 SpDG~~LaTGS~DGtIrIWDl~tgk~l----~tL~gHs~~VtsLafSpD------g~lLASGS~DGtIrVWDl~tg~~-- 319 (1715)
+|++.+|++|+.|++|+||++.++++. .++.+|.+.|.+|+|+|+ +.+||+|+.||+|+|||+.++..
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 455556667778999999999887642 456778899999999996 57999999999999999987642
Q ss_pred ---------eEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCC
Q 048801 320 ---------ISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPS 390 (1715)
Q Consensus 320 ---------l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~ 390 (1715)
...+.+|...|++++|++++ .|++|+.||+|++||+.++.....
T Consensus 250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~~----~lasgs~DgtV~lWD~~~~~~~~~----------------------- 302 (524)
T 2j04_B 250 HVFKMCEKPSLTLSLADSLITTFDFLSPT----TVVCGFKNGFVAEFDLTDPEVPSF----------------------- 302 (524)
T ss_dssp SEEECCCSCSEEECCTTTCEEEEEESSSS----EEEEEETTSEEEEEETTBCSSCSE-----------------------
T ss_pred ccceeecCceEEEEcCCCCEEEEEecCCC----eEEEEeCCCEEEEEECCCCCCceE-----------------------
Confidence 35788999999999999863 799999999999999986532111
Q ss_pred CCCCCCCcceeEE--EEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC--CeeEEEEccCcccccc
Q 048801 391 SSNGLQSHQILCC--AYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN--DVNYVQFSGCAVASRS 465 (1715)
Q Consensus 391 ~~~~~h~~~Vtsl--afSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~--~V~sLafspdg~as~~ 465 (1715)
....|...|.++ +|+++| .+||+|+.|++|+|||+++++ .+..+.+|.. .|.+++|+|++
T Consensus 303 -~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~---------~~~~~~~~~~~~~v~~v~fsp~~----- 367 (524)
T 2j04_B 303 -YDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA---------TTKTTVSRFRGSNLVPVVYCPQI----- 367 (524)
T ss_dssp -EEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH---------HHCEEEEECSCCSCCCEEEETTT-----
T ss_pred -EeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC---------cccccccccccCcccceEeCCCc-----
Confidence 123467789999 578888 899999999999999997642 2344555543 58899999986
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~ 545 (1715)
..|++++.|++|++||++++. ....+.+|.
T Consensus 368 ---------------------~~l~s~~~d~tv~lwd~~~~~-----------------------------~~~~l~gH~ 397 (524)
T 2j04_B 368 ---------------------YSYIYSDGASSLRAVPSRAAF-----------------------------AVHPLVSRE 397 (524)
T ss_dssp ---------------------TEEEEECSSSEEEEEETTCTT-----------------------------CCEEEEECS
T ss_pred ---------------------CeEEEeCCCCcEEEEECcccc-----------------------------cceeeecCC
Confidence 679999999999999998632 233456788
Q ss_pred CCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec-----CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC-C
Q 048801 546 RGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG-----HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW-E 619 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g-----H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~-t 619 (1715)
..|++|+|+|+|++|++|+.|++|+|||+..+ .+..+.. +...|++++|+|++ .++ ... | .+.+|+.. +
T Consensus 398 ~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g-~~~-~~~-~-~~~~~~~~~~ 472 (524)
T 2j04_B 398 TTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKD-DKY-RID-S-SYEVYPLTVN 472 (524)
T ss_dssp SCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSS-CEE-EEC-C-CCCCCC----
T ss_pred CceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCC-CeE-Ecc-C-CceecccccC
Confidence 99999999999999999999999999998654 2222211 12247899999944 443 222 2 34444443 5
Q ss_pred CceEEEEEcccceEEEEEEcCCCC---EEEEEeCCCeEEEEECC
Q 048801 620 GTPIRIYEIGRFKLVDGKFSPDGT---SIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 620 gk~l~tl~~h~~~V~svafSPDG~---~LAsgs~DG~I~IWdl~ 660 (1715)
|.++..+.+|...|.+|+|+|++. +||+|+.+|.|+||++.
T Consensus 473 g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 473 DVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp ---------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred CcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 778888999999999999999964 99999999999999985
No 63
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-33 Score=340.44 Aligned_cols=306 Identities=15% Similarity=0.231 Sum_probs=248.2
Q ss_pred CCeEEEEECCCCC-EEEEE----------eCCCeeEEEECCCCC---ceEEEeCCCCCeEEEEecCCCCcceEEEEecCC
Q 048801 286 GDITDLAVSSNNT-LVASA----------SNDFVIRVWRLPDGL---PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD 351 (1715)
Q Consensus 286 ~~VtsLafSpDg~-lLASG----------S~DGtIrVWDl~tg~---~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D 351 (1715)
..|.+++|+|++. +||+| +.|+.|+|||+.++. ++..+ .|...|++++|+|++. +|++++.|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~---~l~~~~~d 88 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNK---IIAGALDN 88 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSS---CEEEEESS
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCC---eEEEEccC
Confidence 3578899999987 99999 889999999999875 34444 5889999999999987 89999999
Q ss_pred CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC-CCeEEEecCCCeEEEEeCCCCC
Q 048801 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN-GTVFVTGSSDTFARVWSACKSS 430 (1715)
Q Consensus 352 GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd-G~~LatGs~DG~IrVWDl~t~~ 430 (1715)
|.|++||+....... ........|...|.+++|+|+ +.+|++|+.||.|++||+.+..
T Consensus 89 g~v~vw~~~~~~~~~---------------------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 147 (416)
T 2pm9_A 89 GSLELYSTNEANNAI---------------------NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCT 147 (416)
T ss_dssp SCEEEECCSSTTSCC---------------------CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTS
T ss_pred CeEEEeecccccccc---------------------cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCc
Confidence 999999997621100 001112346778999999998 8999999999999999998764
Q ss_pred ccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCc
Q 048801 431 VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHG 510 (1715)
Q Consensus 431 ~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~ 510 (1715)
..........+..+..|...|.+++|+|++ ...|++++.||.|++||+.+++...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------------~~~l~~~~~dg~v~iwd~~~~~~~~ 202 (416)
T 2pm9_A 148 ESPSNYTPLTPGQSMSSVDEVISLAWNQSL-------------------------AHVFASAGSSNFASIWDLKAKKEVI 202 (416)
T ss_dssp SCTTTCCCBCCCCSCCSSCCCCEEEECSSC-------------------------TTEEEEESSSSCEEEEETTTTEEEE
T ss_pred cccccccccccccccCCCCCeeEEEeCCCC-------------------------CcEEEEEcCCCCEEEEECCCCCcce
Confidence 110000111223457899999999999974 3789999999999999998754222
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC-CEEEEEecCC---eEEEEECCCC-ceEEEEe-
Q 048801 511 KVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN-RFVLAAIMDC---RICVWNAVDG-SLVHSLT- 584 (1715)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG-~~LaTgs~DG---tI~IWDl~sg-~~l~tL~- 584 (1715)
.+. . .....+|...|.+++|+|++ .+|++++.|+ .|++||+.++ .++..+.
T Consensus 203 ~~~---------~--------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~ 259 (416)
T 2pm9_A 203 HLS---------Y--------------TSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQ 259 (416)
T ss_dssp EEC---------C--------------CCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCS
T ss_pred EEe---------c--------------cccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeec
Confidence 110 0 00112347789999999997 6899999998 9999999987 6777888
Q ss_pred cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc
Q 048801 585 GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDG-TSIVLSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 585 gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG-~~LAsgs~DG~I~IWdl~tGe 663 (1715)
+|...|++++|+|.++.+|++++.||.|+|||+.+++++..+..|...|.+++|+|++ .+|++++.||.|+||++.++.
T Consensus 260 ~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 260 GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 9999999999999778899999999999999999999999999999999999999999 899999999999999998775
Q ss_pred c
Q 048801 664 S 664 (1715)
Q Consensus 664 ~ 664 (1715)
.
T Consensus 340 ~ 340 (416)
T 2pm9_A 340 N 340 (416)
T ss_dssp C
T ss_pred C
Confidence 4
No 64
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-33 Score=340.09 Aligned_cols=303 Identities=13% Similarity=0.169 Sum_probs=251.2
Q ss_pred ccceeEEEE-cCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCC---Cc---EEEEecCCCCCeEEEEECCCCCEEEE
Q 048801 231 QKMQNIKKL-RGHRDAVYCAIFDR-SGRFVITGSDDRLVKIWSMET---AF---CLASCRGHEGDITDLAVSSNNTLVAS 302 (1715)
Q Consensus 231 ~~~k~l~~L-~GH~~~Vt~VafSp-DG~~LaTGS~DGtIrIWDl~t---gk---~l~tL~gHs~~VtsLafSpDg~lLAS 302 (1715)
...+.+..| .+|.+.|++++|+| ++.+||+|+.||+|+|||+.+ +. ....+ +|...|++++|+|++.+|++
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s 128 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAV 128 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEE
Confidence 346788889 99999999999999 999999999999999999876 43 23333 49999999999999999999
Q ss_pred EeCCCeeEEEECC---CCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccC
Q 048801 303 ASNDFVIRVWRLP---DGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITG 379 (1715)
Q Consensus 303 GS~DGtIrVWDl~---tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g 379 (1715)
|+.||+|+|||+. ++..+..+.+| .|..+.|+|++.
T Consensus 129 ~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~~--------------------------------------- 167 (437)
T 3gre_A 129 SSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFGK--------------------------------------- 167 (437)
T ss_dssp EETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGSS---------------------------------------
T ss_pred EeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCccc---------------------------------------
Confidence 9999999999994 77777777666 677777776421
Q ss_pred ccCCCCCCCCCCCCCCCCcceeEEE--EccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecC--CCCCeeEEE
Q 048801 380 KSNVPSNNGPSSSNGLQSHQILCCA--YNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSG--HENDVNYVQ 455 (1715)
Q Consensus 380 ~~~~~~~~~~~~~~~~h~~~Vtsla--fSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~g--H~~~V~sLa 455 (1715)
...+.++. +++++.+|++|+.||.|++||+.+++ .+..+.+ |...|.+++
T Consensus 168 -----------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~h~~~v~~~~ 221 (437)
T 3gre_A 168 -----------------NEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE---------RLQIIENSPRHGAVSSIC 221 (437)
T ss_dssp -----------------CCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC---------EEEEEECCGGGCCEEEEE
T ss_pred -----------------ccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe---------eeEEEccCCCCCceEEEE
Confidence 11244455 67899999999999999999998743 4566666 889999999
Q ss_pred EccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCC
Q 048801 456 FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRG 535 (1715)
Q Consensus 456 fspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g 535 (1715)
|+|++ ..|++|+.||.|++||++++...
T Consensus 222 ~s~~~--------------------------~~l~s~~~dg~i~iwd~~~~~~~-------------------------- 249 (437)
T 3gre_A 222 IDEEC--------------------------CVLILGTTRGIIDIWDIRFNVLI-------------------------- 249 (437)
T ss_dssp ECTTS--------------------------CEEEEEETTSCEEEEETTTTEEE--------------------------
T ss_pred ECCCC--------------------------CEEEEEcCCCeEEEEEcCCccEE--------------------------
Confidence 99986 79999999999999999864321
Q ss_pred CCcccc-cCCCCCeeEEEeC----CCCCEEEEEecCCeEEEEECCCCceEEEEecC------------------------
Q 048801 536 GPRQRL-LPTPRGVNMIVWS----LDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH------------------------ 586 (1715)
Q Consensus 536 ~~~~~l-~~h~~~VtslafS----PDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH------------------------ 586 (1715)
..+ ..|...|++++|+ +++.+|++|+.||.|+|||+.+++++..+.+|
T Consensus 250 ---~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 326 (437)
T 3gre_A 250 ---RSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGI 326 (437)
T ss_dssp ---EEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCC
T ss_pred ---EEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccc
Confidence 122 2456689999554 57889999999999999999999998888754
Q ss_pred --CCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEc------------------------------------
Q 048801 587 --SASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEI------------------------------------ 628 (1715)
Q Consensus 587 --~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~------------------------------------ 628 (1715)
...|++++|+ ++.+|++|+.||.|++||+.+++++..+.+
T Consensus 327 ~~~~~v~~l~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (437)
T 3gre_A 327 RSLNALSTISVS--NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSL 404 (437)
T ss_dssp CSGGGGCCEEEE--TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-----------
T ss_pred ccCCceEEEEEC--CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccc
Confidence 4457788888 348899999999999999999998887775
Q ss_pred -ccceEEEEEEcCC--CCEEEEEeCCCeEEEEE
Q 048801 629 -GRFKLVDGKFSPD--GTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 629 -h~~~V~svafSPD--G~~LAsgs~DG~I~IWd 658 (1715)
|...|.+++|+++ +.+|++|+.||.|+||+
T Consensus 405 ~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 405 YHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 6788999999998 88999999999999994
No 65
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-33 Score=338.56 Aligned_cols=300 Identities=17% Similarity=0.174 Sum_probs=233.6
Q ss_pred EEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC
Q 048801 238 KLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA--FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP 315 (1715)
Q Consensus 238 ~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg--k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~ 315 (1715)
.+..|.+.|++++|+|+|++||+|+.||.|+||++.++ +.+..+.+|...|++++|+|++++|++|+.|++|+|||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 45567889999999999999999999999999999988 7888899999999999999999999999999999999999
Q ss_pred CCC---ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCC---cceecCCCCCCCccCccCCCCCCCC
Q 048801 316 DGL---PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQY---SPRIYLPKPPDAITGKSNVPSNNGP 389 (1715)
Q Consensus 316 tg~---~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~---l~~i~~~~~~~~i~g~~~~~~~~~~ 389 (1715)
++. ....+.+|...|++++|+|++. +|++++.|+.|++||+.++.. ...+
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------------------- 141 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNED---KFAVGSGARVISVCYFEQENDWWVSKHL--------------------- 141 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSS---CCEEEESSSCEEECCC-----CCCCEEE---------------------
T ss_pred CCCceeeeeEecccCCceEEEEECCCCC---EEEEEecCCeEEEEEECCcccceeeeEe---------------------
Confidence 887 7778889999999999999987 799999999999999987652 1111
Q ss_pred CCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCC---------CCceeeeeecCCCCCeeEEEEccCc
Q 048801 390 SSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSE---------QPIHELDVLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 390 ~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~---------~~~~~l~~l~gH~~~V~sLafspdg 460 (1715)
...|...|.+++|+|++.+|++|+.||.|++||+......... .....+..+ +|...|.+++|+|++
T Consensus 142 ---~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~ 217 (377)
T 3dwl_C 142 ---KRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG 217 (377)
T ss_dssp ---CSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS
T ss_pred ---ecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC
Confidence 1125778999999999999999999999999999654321110 113345555 899999999999986
Q ss_pred ccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc
Q 048801 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR 540 (1715)
Q Consensus 461 ~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 540 (1715)
.+|++++.||.|++||+.++.... ..+..
T Consensus 218 --------------------------~~l~~~~~d~~i~iwd~~~~~~~~-------------------------~~~~~ 246 (377)
T 3dwl_C 218 --------------------------NALAYAGHDSSVTIAYPSAPEQPP-------------------------RALIT 246 (377)
T ss_dssp --------------------------SCEEEEETTTEEC-CEECSTTSCE-------------------------EECCC
T ss_pred --------------------------CEEEEEeCCCcEEEEECCCCCCcc-------------------------eeeEe
Confidence 799999999999999998644200 01334
Q ss_pred ccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCc------------------------------eE------EEE-
Q 048801 541 LLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS------------------------------LV------HSL- 583 (1715)
Q Consensus 541 l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~------------------------------~l------~tL- 583 (1715)
+..|...|.+++|+|+|++|++|+.++.+ +|+..... .+ ..+
T Consensus 247 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (377)
T 3dwl_C 247 VKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFR 325 (377)
T ss_dssp EECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC--------------
T ss_pred ecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccccccccccccc
Confidence 56788899999999999999999877666 66654211 00 111
Q ss_pred ---------------ecCCCCeEEEEEccCCCc---EEEEEeCCCcEEEEEC
Q 048801 584 ---------------TGHSASSYVLDVHPFNPR---IAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 584 ---------------~gH~~~V~sLafSP~dg~---lLaSgs~DGtI~VWDl 617 (1715)
..|.+.|+++++.+.++. .|+|||.||.|+|||+
T Consensus 326 ~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 326 NMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -----------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred chhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 139999999998774444 7899999999999985
No 66
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.6e-33 Score=345.72 Aligned_cols=302 Identities=20% Similarity=0.167 Sum_probs=235.2
Q ss_pred cEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCeeEEEECCCCCceE--EEeCCCCCeEEEEecCCCCcceEEEEecCCC
Q 048801 276 FCLASCRGHEGDITDLAVSS-NNTLVASASNDFVIRVWRLPDGLPIS--VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG 352 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSp-Dg~lLASGS~DGtIrVWDl~tg~~l~--~L~gH~~~VtsLafSPdg~~~~~LaSgS~DG 352 (1715)
.......+|...|+||+|+| ++.+||+|+.||+|+|||+.++.... .+.+|.+.|++|+|+|.+.. +|++++.||
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~--~l~s~s~D~ 187 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTN--QFYASSMEG 187 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTT--EEEEECSSS
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCC--EEEEEeCCC
Confidence 33445667899999999999 56799999999999999998876544 44689999999999985332 899999999
Q ss_pred cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCcc
Q 048801 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVE 432 (1715)
Q Consensus 353 tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~ 432 (1715)
+|++||+.++... .+.. ...+...+.+++|+|++.+|++|+.||.|++||+...
T Consensus 188 ~v~iwd~~~~~~~-~~~~----------------------~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--- 241 (435)
T 4e54_B 188 TTRLQDFKGNILR-VFAS----------------------SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--- 241 (435)
T ss_dssp CEEEEETTSCEEE-EEEC----------------------CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC---
T ss_pred EEEEeeccCCcee-EEec----------------------cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc---
Confidence 9999999765422 1111 0112345788999999999999999999999998642
Q ss_pred CCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccc
Q 048801 433 DSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKV 512 (1715)
Q Consensus 433 ~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~ 512 (1715)
.+..+.+|...|.+++|+|++ ..+|++|+.||.|+|||+++.....
T Consensus 242 -------~~~~~~~h~~~v~~v~~~p~~-------------------------~~~~~s~s~d~~v~iwd~~~~~~~~-- 287 (435)
T 4e54_B 242 -------ELWNLRMHKKKVTHVALNPCC-------------------------DWFLATASVDQTVKIWDLRQVRGKA-- 287 (435)
T ss_dssp -------BCCCSBCCSSCEEEEEECTTC-------------------------SSEEEEEETTSBCCEEETTTCCSSS--
T ss_pred -------eeEEEecccceEEeeeecCCC-------------------------ceEEEEecCcceeeEEecccccccc--
Confidence 356678999999999999976 3588999999999999998643211
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCC----
Q 048801 513 GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSA---- 588 (1715)
Q Consensus 513 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~---- 588 (1715)
......+|...|++++|+|+|.+|++|+.||.|+|||+.++.....+.+|..
T Consensus 288 ------------------------~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~ 343 (435)
T 4e54_B 288 ------------------------SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQ 343 (435)
T ss_dssp ------------------------CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCS
T ss_pred ------------------------eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccc
Confidence 1223356888999999999999999999999999999999999888877653
Q ss_pred --CeEEEEEccCCCcEEEEEe------------CCCcEEEEECCCCceEEEEE-cccceEEEE-EEcCCCCEEEEEeCCC
Q 048801 589 --SSYVLDVHPFNPRIAMSAG------------YDGRTIVWDIWEGTPIRIYE-IGRFKLVDG-KFSPDGTSIVLSDDVG 652 (1715)
Q Consensus 589 --~V~sLafSP~dg~lLaSgs------------~DGtI~VWDl~tgk~l~tl~-~h~~~V~sv-afSPDG~~LAsgs~DG 652 (1715)
.+..+.|+| .+.++++++ .++.|+|||+.+|+++..+. .|...|.++ +|+|+|.+||+|+ |+
T Consensus 344 ~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~ 421 (435)
T 4e54_B 344 HLTPIKAAWHP-RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GY 421 (435)
T ss_dssp SSCCCBCEECS-SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SS
T ss_pred cceeEEEEEcC-CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CC
Confidence 233456777 333444432 34679999999999998876 456677776 7999999999876 78
Q ss_pred eEEEEECCCCccc
Q 048801 653 QIYLLNTGQGESQ 665 (1715)
Q Consensus 653 ~I~IWdl~tGe~~ 665 (1715)
.|+||++.+|+..
T Consensus 422 ~i~iW~~~~gk~r 434 (435)
T 4e54_B 422 HILIWSQQEARTR 434 (435)
T ss_dssp EEEECCCC-----
T ss_pred cEEEEECCcCeee
Confidence 9999999988654
No 67
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.2e-32 Score=356.39 Aligned_cols=295 Identities=22% Similarity=0.321 Sum_probs=245.7
Q ss_pred cEEEEecCCCCCeEEEEECCCC-CEEEEEeCCCeeEEEECCCC-----CceEEEeCCCCCeEEEEecCCCCcceEEEEec
Q 048801 276 FCLASCRGHEGDITDLAVSSNN-TLVASASNDFVIRVWRLPDG-----LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS 349 (1715)
Q Consensus 276 k~l~tL~gHs~~VtsLafSpDg-~lLASGS~DGtIrVWDl~tg-----~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS 349 (1715)
.....+.+|.+.|++|+|++++ .+|+||+.|++|+||++.+. .....+.+|...|++++|+|++. +|++|+
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~---~l~sgs 449 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ---FALSGS 449 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS---EEEEEE
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC---EEEEEe
Confidence 3445789999999999999865 79999999999999999764 34567899999999999999998 899999
Q ss_pred CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCC
Q 048801 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 350 ~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~ 429 (1715)
.||+|+|||+.++.....+ ..|...|.+++|+|++.+|++|+.|+.|+|||+...
T Consensus 450 ~Dg~v~vwd~~~~~~~~~~-------------------------~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~ 504 (694)
T 3dm0_A 450 WDGELRLWDLAAGVSTRRF-------------------------VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE 504 (694)
T ss_dssp TTSEEEEEETTTTEEEEEE-------------------------ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC
T ss_pred CCCcEEEEECCCCcceeEE-------------------------eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999999999887654433 235778999999999999999999999999998642
Q ss_pred CccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccC
Q 048801 430 SVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH 509 (1715)
Q Consensus 430 ~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~ 509 (1715)
.. ........+|...|.+++|+|++. ...|++++.||+|++||+.+.+
T Consensus 505 ~~------~~~~~~~~~h~~~v~~~~~~~~~~------------------------~~~l~s~s~d~~v~vwd~~~~~-- 552 (694)
T 3dm0_A 505 CK------YTISEGGEGHRDWVSCVRFSPNTL------------------------QPTIVSASWDKTVKVWNLSNCK-- 552 (694)
T ss_dssp EE------EEECSSTTSCSSCEEEEEECSCSS------------------------SCEEEEEETTSCEEEEETTTCC--
T ss_pred cc------eeeccCCCCCCCcEEEEEEeCCCC------------------------cceEEEEeCCCeEEEEECCCCc--
Confidence 11 111223357899999999999751 2579999999999999998633
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCC
Q 048801 510 GKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSAS 589 (1715)
Q Consensus 510 ~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~ 589 (1715)
....+.+|...|++++|+|+|++|++|+.||.|+|||+.+++.+..+.. ...
T Consensus 553 ---------------------------~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~ 604 (694)
T 3dm0_A 553 ---------------------------LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSV 604 (694)
T ss_dssp ---------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSC
T ss_pred ---------------------------EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCc
Confidence 2334567889999999999999999999999999999999999888765 467
Q ss_pred eEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEccc-------------------ceEEEEEEcCCCCEEEEEeC
Q 048801 590 SYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGR-------------------FKLVDGKFSPDGTSIVLSDD 650 (1715)
Q Consensus 590 V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~-------------------~~V~svafSPDG~~LAsgs~ 650 (1715)
|.+++|+| ++.+|++++ |+.|+|||+.+++++..+..+. ..+++++|||||++|++|+.
T Consensus 605 v~~~~~sp-~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~ 682 (694)
T 3dm0_A 605 IHALCFSP-NRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT 682 (694)
T ss_dssp EEEEEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEET
T ss_pred EEEEEEcC-CCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcC
Confidence 99999999 677776654 6679999999999888775321 12678999999999999999
Q ss_pred CCeEEEEECC
Q 048801 651 VGQIYLLNTG 660 (1715)
Q Consensus 651 DG~I~IWdl~ 660 (1715)
||.|+||++.
T Consensus 683 Dg~i~iW~i~ 692 (694)
T 3dm0_A 683 DGVIRVWGIG 692 (694)
T ss_dssp TSEEEEEEC-
T ss_pred CCeEEEEecc
Confidence 9999999985
No 68
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.3e-32 Score=326.60 Aligned_cols=314 Identities=13% Similarity=0.144 Sum_probs=254.6
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC--ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEe
Q 048801 281 CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL--PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358 (1715)
Q Consensus 281 L~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~--~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWD 358 (1715)
+..|..+|++++|+|++++||+|+.|+.|+|||+.+++ .+..+.+|...|++++|+|++. +|++++.||.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN---RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTT---EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCC---EEEEEcCCCeEEEEE
Confidence 45689999999999999999999999999999999887 8889999999999999999987 899999999999999
Q ss_pred cCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCc
Q 048801 359 ARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPI 438 (1715)
Q Consensus 359 l~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~ 438 (1715)
+.+++....... ..|...|.+++|+|++.+|++|+.||.|++|++..... ..
T Consensus 81 ~~~~~~~~~~~~-----------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-----~~ 132 (372)
T 1k8k_C 81 LKGRTWKPTLVI-----------------------LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND-----WW 132 (372)
T ss_dssp EETTEEEEEEEC-----------------------CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT-----EE
T ss_pred CCCCeeeeeEEe-----------------------ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc-----ce
Confidence 987764333221 22456799999999999999999999999999976431 01
Q ss_pred eeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccccc
Q 048801 439 HELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRA 518 (1715)
Q Consensus 439 ~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~ 518 (1715)
.......+|...|.+++|+|++ ..|++++.||.|++||+..........
T Consensus 133 ~~~~~~~~~~~~i~~~~~~~~~--------------------------~~l~~~~~dg~i~~~d~~~~~~~~~~~----- 181 (372)
T 1k8k_C 133 VCKHIKKPIRSTVLSLDWHPNS--------------------------VLLAAGSCDFKCRIFSAYIKEVEERPA----- 181 (372)
T ss_dssp EEEEECTTCCSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEECCCTTTSCCCC-----
T ss_pred eeeeeecccCCCeeEEEEcCCC--------------------------CEEEEEcCCCCEEEEEccccccccccc-----
Confidence 1223346789999999999986 799999999999999986432111000
Q ss_pred ccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccC
Q 048801 519 YHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPF 598 (1715)
Q Consensus 519 ~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~ 598 (1715)
..........+.....+..|...|.+++|+|++.+|++++.|+.|++||+.+++++..+.+|...|.+++|+|
T Consensus 182 ------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~- 254 (372)
T 1k8k_C 182 ------PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT- 254 (372)
T ss_dssp ------CBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE-
T ss_pred ------ccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEec-
Confidence 0000000112344555668889999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEECCC--Cce--------------------------------E------EEE-EcccceEEEEE
Q 048801 599 NPRIAMSAGYDGRTIVWDIWE--GTP--------------------------------I------RIY-EIGRFKLVDGK 637 (1715)
Q Consensus 599 dg~lLaSgs~DGtI~VWDl~t--gk~--------------------------------l------~tl-~~h~~~V~sva 637 (1715)
++.+|++| .||.|++|++.+ ++. . ..+ .+|...|.+++
T Consensus 255 ~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 333 (372)
T 1k8k_C 255 ESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQIS 333 (372)
T ss_dssp TTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEE
T ss_pred CCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeE
Confidence 67787776 999999999987 421 0 222 37888999998
Q ss_pred Ec-CCC---CEEEEEeCCCeEEEEECCCCcc
Q 048801 638 FS-PDG---TSIVLSDDVGQIYLLNTGQGES 664 (1715)
Q Consensus 638 fS-PDG---~~LAsgs~DG~I~IWdl~tGe~ 664 (1715)
|+ ++| .+|++|+.||.|+||++.+++.
T Consensus 334 ~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 334 VLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp EEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred EecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 66 777 9999999999999999987654
No 69
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.9e-32 Score=322.28 Aligned_cols=294 Identities=14% Similarity=0.159 Sum_probs=237.4
Q ss_pred EEEecCCCCCeEEEEECCCCCE-EEEEeC---CCeeEEEECCCCCceEEE-eCCCCCeEEEEecCC---CCcceEEEEec
Q 048801 278 LASCRGHEGDITDLAVSSNNTL-VASASN---DFVIRVWRLPDGLPISVL-RGHTGAVTAIAFSPR---PSAIYQLLSSS 349 (1715)
Q Consensus 278 l~tL~gHs~~VtsLafSpDg~l-LASGS~---DGtIrVWDl~tg~~l~~L-~gH~~~VtsLafSPd---g~~~~~LaSgS 349 (1715)
...+.+|...|++++|+|++.. +++|+. ||.|+|||+.++...... .+|...|++++|+|+ +. +|++++
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~l~~~~ 87 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQR---YLATGD 87 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTC---CEEEEE
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCc---eEEEec
Confidence 3456789999999999999864 556665 999999999998776543 379999999999998 35 899999
Q ss_pred CCCcEEEEecCCCC-CcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEE------EccCCCeEEEecCCCeEE
Q 048801 350 DDGTCRIWDARYSQ-YSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCA------YNANGTVFVTGSSDTFAR 422 (1715)
Q Consensus 350 ~DGtVrIWDl~tg~-~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsla------fSpdG~~LatGs~DG~Ir 422 (1715)
.||.|++||+.+++ .+..+ ..|...|.+++ |++++.+|++|+.||.|+
T Consensus 88 ~dg~i~iwd~~~~~~~~~~~-------------------------~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 88 FGGNLHIWNLEAPEMPVYSV-------------------------KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp TTSCEEEECTTSCSSCSEEE-------------------------CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred CCCeEEEEeCCCCCccEEEE-------------------------EecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 99999999998776 32222 24567799995 578999999999999999
Q ss_pred EEeCCCCCccCCCCCceeeeeecCCCC----CeeEEEE----ccCcccccccccccccccccccccCCcccCceEEEEcC
Q 048801 423 VWSACKSSVEDSEQPIHELDVLSGHEN----DVNYVQF----SGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR 494 (1715)
Q Consensus 423 VWDl~t~~~~~~~~~~~~l~~l~gH~~----~V~sLaf----spdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~ 494 (1715)
+||+.++. ..+..+..|.+ .|.+++| ++++ ..|++++.
T Consensus 143 vwd~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------------------~~l~~~~~ 188 (357)
T 3i2n_A 143 VWDPRQKD--------DPVANMEPVQGENKRDCWTVAFGNAYNQEE--------------------------RVVCAGYD 188 (357)
T ss_dssp EECTTSCS--------SCSEEECCCTTSCCCCEEEEEEECCCC-CC--------------------------CEEEEEET
T ss_pred EEeCCCCC--------CcceeccccCCCCCCceEEEEEEeccCCCC--------------------------CEEEEEcc
Confidence 99998753 12334444433 8889984 4544 79999999
Q ss_pred CCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC---CCCEEEEEecCCeEEE
Q 048801 495 DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL---DNRFVLAAIMDCRICV 571 (1715)
Q Consensus 495 DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP---DG~~LaTgs~DGtI~I 571 (1715)
||.|++||+++++. .....|...|.+++|+| ++.+|++|+.||.|++
T Consensus 189 d~~i~i~d~~~~~~------------------------------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 238 (357)
T 3i2n_A 189 NGDIKLFDLRNMAL------------------------------RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHV 238 (357)
T ss_dssp TSEEEEEETTTTEE------------------------------EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred CCeEEEEECccCce------------------------------eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence 99999999986431 12244667899999999 9999999999999999
Q ss_pred EECCCCceEEEEe-----cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC-------------------ceEEEEE
Q 048801 572 WNAVDGSLVHSLT-----GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG-------------------TPIRIYE 627 (1715)
Q Consensus 572 WDl~sg~~l~tL~-----gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg-------------------k~l~tl~ 627 (1715)
||+.+++.+..+. +|...|++++|+|++..+|++|+.||.|+|||+.++ +++..+.
T Consensus 239 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (357)
T 3i2n_A 239 FDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT 318 (357)
T ss_dssp EEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE
T ss_pred EeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccc
Confidence 9998876655544 999999999999954448999999999999999754 4677888
Q ss_pred cccceEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCc
Q 048801 628 IGRFKLVDGKFSPDGTSIV-LSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 628 ~h~~~V~svafSPDG~~LA-sgs~DG~I~IWdl~tGe 663 (1715)
.|...|.+++|+|+|++|+ +++.||.|+||++.+.+
T Consensus 319 ~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 319 LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 8999999999999999998 79999999999998764
No 70
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.7e-31 Score=328.91 Aligned_cols=301 Identities=17% Similarity=0.276 Sum_probs=241.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEec--CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR--GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL 323 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~--gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L 323 (1715)
+++|+||++ ++||+|. |++|+|||+.+|+++..+. +|...|++|+|+|+|++||+|+.||+|+|||+.+++.+..+
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~ 185 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 185 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence 567899975 5888875 8999999999999887765 67888999999999999999999999999999999999999
Q ss_pred eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEE
Q 048801 324 RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCC 403 (1715)
Q Consensus 324 ~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsl 403 (1715)
.+|...|.++++++. +|++|+.|+.+++||......... ....|...+.++
T Consensus 186 ~~h~~~v~~~s~~~~-----~l~sgs~d~~i~~~d~~~~~~~~~------------------------~~~~h~~~~~~~ 236 (420)
T 4gga_A 186 TSHSARVGSLSWNSY-----ILSSGSRSGHIHHHDVRVAEHHVA------------------------TLSGHSQEVCGL 236 (420)
T ss_dssp CCCSSCEEEEEEETT-----EEEEEETTSEEEEEETTSSSCEEE------------------------EEECCSSCEEEE
T ss_pred eCCCCceEEEeeCCC-----EEEEEeCCCceeEeeecccceeeE------------------------Eecccccceeee
Confidence 999999999998653 899999999999999876442211 123456779999
Q ss_pred EEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCc
Q 048801 404 AYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSW 483 (1715)
Q Consensus 404 afSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~ 483 (1715)
.|+++|.++++++.|+.|+||+..++.. ....+.....|...|.+++|+|.+
T Consensus 237 ~~~~~g~~l~s~~~D~~v~i~~~~~~~~-----~~~~~~~~~~~~~~V~~~~~~p~~----------------------- 288 (420)
T 4gga_A 237 RWAPDGRHLASGGNDNLVNVWPSAPGEG-----GWVPLQTFTQHQGAVKAVAWCPWQ----------------------- 288 (420)
T ss_dssp EECTTSSEEEEEETTSCEEEEESSCCSS-----CSCCSEEECCCSSCEEEEEECTTC-----------------------
T ss_pred eecCCCCeeeeeeccccceEEeeccccc-----cceeeeeecccCCceeeeeeCCCc-----------------------
Confidence 9999999999999999999999987542 123456678899999999999975
Q ss_pred ccCceEEE--EcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEE
Q 048801 484 FCHDNIVT--CSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL 561 (1715)
Q Consensus 484 ~~~~~LaS--gS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~La 561 (1715)
...+++ |+.|++|++||+.++.... ...+...+.++.|++++..|+
T Consensus 289 --~~~la~~~gs~D~~I~iwd~~t~~~~~------------------------------~~~~~~~v~~~~~~~~~~~lv 336 (420)
T 4gga_A 289 --SNVLATGGGTSDRHIRIWNVCSGACLS------------------------------AVDAHSQVCSILWSPHYKELI 336 (420)
T ss_dssp --TTEEEEEECTTTCEEEEEETTTTEEEE------------------------------EEECSSCEEEEEEETTTTEEE
T ss_pred --ccEEEEEeecCCCEEEEEeCCccccce------------------------------eeccccceeeeeecCCCCeEE
Confidence 355554 5689999999998754221 112345688999999999998
Q ss_pred EEe--cCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEE
Q 048801 562 AAI--MDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKF 638 (1715)
Q Consensus 562 Tgs--~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svaf 638 (1715)
+++ .|+.|+|||+.+++++..+.+|.+.|++|+|+| ++.+|+||+.||+|+|||+.+..+.+....+...+....|
T Consensus 337 ~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 337 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp EEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred EEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 876 689999999999999999999999999999999 7788999999999999999887776666544444433333
No 71
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4e-32 Score=327.76 Aligned_cols=328 Identities=16% Similarity=0.161 Sum_probs=258.7
Q ss_pred CCcEEEEeCCCCcEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCeeEEEECCCCCceEEEe-------------CCCCC
Q 048801 264 DRLVKIWSMETAFCLASCRGHEGDITDLAVSS-NNTLVASASNDFVIRVWRLPDGLPISVLR-------------GHTGA 329 (1715)
Q Consensus 264 DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSp-Dg~lLASGS~DGtIrVWDl~tg~~l~~L~-------------gH~~~ 329 (1715)
++.++||++.+++....+.+|.+.|++++|+| ++++||+|+.||.|+|||+.++.....+. +|...
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 45688999998889999999999999999999 99999999999999999999887655443 59999
Q ss_pred eEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC-
Q 048801 330 VTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN- 408 (1715)
Q Consensus 330 VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd- 408 (1715)
|++++|+|++.. +|++++.||.|++||+.+++....+. +...+.+++|++.
T Consensus 102 v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~ 153 (408)
T 4a11_B 102 VETVQWYPHDTG--MFTSSSFDKTLKVWDTNTLQTADVFN--------------------------FEETVYSHHMSPVS 153 (408)
T ss_dssp EEEEEECTTCTT--CEEEEETTSEEEEEETTTTEEEEEEE--------------------------CSSCEEEEEECSSC
T ss_pred EEEEEEccCCCc--EEEEEeCCCeEEEeeCCCCccceecc--------------------------CCCceeeeEeecCC
Confidence 999999994432 79999999999999999877654442 2345889999884
Q ss_pred --CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccC
Q 048801 409 --GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCH 486 (1715)
Q Consensus 409 --G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~ 486 (1715)
+.+|++|+.+|.|++||+.++. .+..+.+|...|.+++|+|++ .
T Consensus 154 ~~~~~~~~~~~~~~v~~~d~~~~~---------~~~~~~~~~~~v~~~~~~~~~-------------------------~ 199 (408)
T 4a11_B 154 TKHCLVAVGTRGPKVQLCDLKSGS---------CSHILQGHRQEILAVSWSPRY-------------------------D 199 (408)
T ss_dssp SSCCEEEEEESSSSEEEEESSSSC---------CCEEECCCCSCEEEEEECSSC-------------------------T
T ss_pred CCCcEEEEEcCCCeEEEEeCCCcc---------eeeeecCCCCcEEEEEECCCC-------------------------C
Confidence 4599999999999999998643 356778899999999999986 2
Q ss_pred ceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC
Q 048801 487 DNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD 566 (1715)
Q Consensus 487 ~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D 566 (1715)
..|++++.||.|++||+++....... +.. ...............|...|.+++|+|++.+|++++.|
T Consensus 200 ~ll~~~~~dg~i~i~d~~~~~~~~~~--------~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 266 (408)
T 4a11_B 200 YILATASADSRVKLWDVRRASGCLIT--------LDQ-----HNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD 266 (408)
T ss_dssp TEEEEEETTSCEEEEETTCSSCCSEE--------CCT-----TTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT
T ss_pred cEEEEEcCCCcEEEEECCCCCccccc--------ccc-----cccccceeeccccccccCceeEEEEcCCCCEEEEecCC
Confidence 36999999999999999875411110 000 00001112233446788899999999999999999999
Q ss_pred CeEEEEECCCCceEEEEecCCC----CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCC
Q 048801 567 CRICVWNAVDGSLVHSLTGHSA----SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDG 642 (1715)
Q Consensus 567 GtI~IWDl~sg~~l~tL~gH~~----~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG 642 (1715)
|.|++||+.+++....+.++.. ....+.+.......+++++.|+.|++||+.+++++..+.+|...|.+++|+|+|
T Consensus 267 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 346 (408)
T 4a11_B 267 NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF 346 (408)
T ss_dssp SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTT
T ss_pred CeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCC
Confidence 9999999999887665543311 111222333344556667889999999999999999999999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCcccc
Q 048801 643 TSIVLSDDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 643 ~~LAsgs~DG~I~IWdl~tGe~~k 666 (1715)
.+|++++.||.|++|++.+++.+.
T Consensus 347 ~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 347 QELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp TEEEEEETTSCEEEEEECC-----
T ss_pred CEEEEECCCCeEEEEeCCCCCccC
Confidence 999999999999999999887553
No 72
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.4e-32 Score=336.99 Aligned_cols=316 Identities=13% Similarity=0.101 Sum_probs=231.5
Q ss_pred ceeEEEEcCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcE--EEEecCCCCCeEEEEECC-CCCEEEEEeCCCe
Q 048801 233 MQNIKKLRGHRDAVYCAIFDR-SGRFVITGSDDRLVKIWSMETAFC--LASCRGHEGDITDLAVSS-NNTLVASASNDFV 308 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSp-DG~~LaTGS~DGtIrIWDl~tgk~--l~tL~gHs~~VtsLafSp-Dg~lLASGS~DGt 308 (1715)
......+.+|...|+||+|+| ++.+||+|+.||.|+|||+.++.. +..+.+|.+.|++|+|+| ++.+|++|+.||+
T Consensus 109 ~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 109 YRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp TTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred eeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 444566788999999999999 567999999999999999987754 445678999999999998 6899999999999
Q ss_pred eEEEECCCCCceEEEeC--CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 309 IRVWRLPDGLPISVLRG--HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 309 IrVWDl~tg~~l~~L~g--H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
|+|||+.++........ +...+.+++|+|++. +|++|+.||.|++||+.... +.
T Consensus 189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~g~~dg~i~~wd~~~~~-~~-------------------- 244 (435)
T 4e54_B 189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSR---MVVTGDNVGNVILLNMDGKE-LW-------------------- 244 (435)
T ss_dssp EEEEETTSCEEEEEECCSSCSCCCCCEEEETTTT---EEEEECSSSBEEEEESSSCB-CC--------------------
T ss_pred EEEeeccCCceeEEeccCCCCccEEEEEECCCCC---EEEEEeCCCcEeeeccCcce-eE--------------------
Confidence 99999976644333333 334678999999988 89999999999999986432 11
Q ss_pred CCCCCCCCCCCcceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccc
Q 048801 387 NGPSSSNGLQSHQILCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRS 465 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~ 465 (1715)
....|...|.+++|+|++. +|++|+.|+.|+|||+.+... ...+....+|...|++++|+|++
T Consensus 245 -----~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~------~~~~~~~~~h~~~v~~~~~spdg----- 308 (435)
T 4e54_B 245 -----NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG------KASFLYSLPHRHPVNAACFSPDG----- 308 (435)
T ss_dssp -----CSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS------SSCCSBCCBCSSCEEECCBCTTS-----
T ss_pred -----EEecccceEEeeeecCCCceEEEEecCcceeeEEecccccc------cceEEEeeeccccccceeECCCC-----
Confidence 1234677899999999886 788999999999999987542 22234456899999999999986
Q ss_pred cccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC
Q 048801 466 AMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP 545 (1715)
Q Consensus 466 ~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~ 545 (1715)
.+|++++.||.|+|||+.++............ . ..............
T Consensus 309 ---------------------~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~~~~~ 355 (435)
T 4e54_B 309 ---------------------ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR---------H---FQHLTPIKAAWHPR 355 (435)
T ss_dssp ---------------------SEEEEEESSSCEEEEESSSSSSEEEECCCCCC---------C---CSSSCCCBCEECSS
T ss_pred ---------------------CeeEEEcCCCEEEEEECCCCccceEEeccccc---------c---cccceeEEEEEcCC
Confidence 79999999999999999876533221100000 0 00000011111122
Q ss_pred CCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCceEEEEe-cCCCCeEEE-EEccCCCcEEEEEeCCCcEEEEECCCCce
Q 048801 546 RGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGSLVHSLT-GHSASSYVL-DVHPFNPRIAMSAGYDGRTIVWDIWEGTP 622 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~~l~tL~-gH~~~V~sL-afSP~dg~lLaSgs~DGtI~VWDl~tgk~ 622 (1715)
..+..+++++++..+++++ .++.|+|||..+++++..+. +|...|.++ +|+| ++.+|++|+ |++|+||++.+|+.
T Consensus 356 ~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp-dg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 356 YNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP-MGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp SSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT-TSSCEEEEC-SSEEEECCCC----
T ss_pred CCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC-CCCEEEEEc-CCcEEEEECCcCee
Confidence 2344445555555444433 34579999999999998875 688888887 6999 677888765 88999999998875
Q ss_pred E
Q 048801 623 I 623 (1715)
Q Consensus 623 l 623 (1715)
.
T Consensus 434 r 434 (435)
T 4e54_B 434 R 434 (435)
T ss_dssp -
T ss_pred e
Confidence 4
No 73
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=7e-32 Score=320.70 Aligned_cols=317 Identities=14% Similarity=0.193 Sum_probs=247.9
Q ss_pred EecCCCCCeEEEEECCC----CCEEEEEeCCCeeEEEECCCCCceEEEeC-----CCCCeEEEEecCCCCc-ceEEEEec
Q 048801 280 SCRGHEGDITDLAVSSN----NTLVASASNDFVIRVWRLPDGLPISVLRG-----HTGAVTAIAFSPRPSA-IYQLLSSS 349 (1715)
Q Consensus 280 tL~gHs~~VtsLafSpD----g~lLASGS~DGtIrVWDl~tg~~l~~L~g-----H~~~VtsLafSPdg~~-~~~LaSgS 349 (1715)
...+|...|++++|+|+ ...+++++.++.|+|||+.++..+..+.. |...|++++|+|++.. ..+|++++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 34589999999999984 45666777777999999998888877764 5578999999998421 12899999
Q ss_pred CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCC
Q 048801 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 350 ~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t 428 (1715)
.||.|++||+.+++.+..+ ..|...|.+++|+| ++.+|++|+.||.|++||+.+
T Consensus 93 ~dg~i~v~d~~~~~~~~~~-------------------------~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHY-------------------------VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp TTCEEEEECTTTCCEEEEE-------------------------ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred CCCEEEEEEchhceEeeee-------------------------cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence 9999999999887655443 23567799999999 999999999999999999986
Q ss_pred CCccCCCCCceeeeee---cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCC
Q 048801 429 SSVEDSEQPIHELDVL---SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 505 (1715)
Q Consensus 429 ~~~~~~~~~~~~l~~l---~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t 505 (1715)
++ .+..+ .+|...|.+++|+|++ ..|++++.||.|++||+.+
T Consensus 148 ~~---------~~~~~~~~~~~~~~v~~~~~~~~~--------------------------~~l~~~~~dg~i~i~d~~~ 192 (366)
T 3k26_A 148 DT---------LVAIFGGVEGHRDEVLSADYDLLG--------------------------EKIMSCGMDHSLKLWRINS 192 (366)
T ss_dssp TE---------EEEEECSTTSCSSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEESCS
T ss_pred Ce---------EEEEecccccccCceeEEEECCCC--------------------------CEEEEecCCCCEEEEECCC
Confidence 43 34444 7899999999999986 7999999999999999987
Q ss_pred CccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCce------
Q 048801 506 RRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL------ 579 (1715)
Q Consensus 506 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~------ 579 (1715)
++....+.. ...+........................|...|.+++|+ +.+|++++.|+.|++||+.++..
T Consensus 193 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 269 (366)
T 3k26_A 193 KRMMNAIKE-SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIK 269 (366)
T ss_dssp HHHHHHHHH-HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCC
T ss_pred Cccccccce-eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccc
Confidence 653322111 000000000000000000111223344588899999998 78999999999999999988754
Q ss_pred --------EEEEecCCCCeEEEEEccCC--CcEEEEEeCCCcEEEEECCCCce----EEEEEcc--cceEEEEEEcCCCC
Q 048801 580 --------VHSLTGHSASSYVLDVHPFN--PRIAMSAGYDGRTIVWDIWEGTP----IRIYEIG--RFKLVDGKFSPDGT 643 (1715)
Q Consensus 580 --------l~tL~gH~~~V~sLafSP~d--g~lLaSgs~DGtI~VWDl~tgk~----l~tl~~h--~~~V~svafSPDG~ 643 (1715)
+..+.+|...|++++|+| + +.+|++|+.||.|+|||+.++++ +..+..| ...|.+++|+|+|+
T Consensus 270 ~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 348 (366)
T 3k26_A 270 PSESNVTILGRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS 348 (366)
T ss_dssp TTCCCEEEEEEEECSSCCSSCCCCEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS
T ss_pred cCCcchheeccccccCCcEEEEEEcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCC
Confidence 788899999999999999 5 88999999999999999998863 4467766 68899999999999
Q ss_pred EEEEEeCCCeEEEEECC
Q 048801 644 SIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 644 ~LAsgs~DG~I~IWdl~ 660 (1715)
+|++++.||.|+|||+.
T Consensus 349 ~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 349 ILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEEEETTSEEEEEEC-
T ss_pred eEEEEeCCCEEEEEEec
Confidence 99999999999999984
No 74
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.6e-31 Score=312.95 Aligned_cols=317 Identities=19% Similarity=0.224 Sum_probs=236.5
Q ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----cEEEEecCCCCCeEEEEECC--CCCEEEEEeCCCeeE
Q 048801 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETA----FCLASCRGHEGDITDLAVSS--NNTLVASASNDFVIR 310 (1715)
Q Consensus 237 ~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tg----k~l~tL~gHs~~VtsLafSp--Dg~lLASGS~DGtIr 310 (1715)
..+.||.+.|++++|+|++++||+|+.||.|+||++.++ +.+..+.+|...|++++|+| ++.+|++|+.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 357899999999999999999999999999999999876 57778899999999999999 699999999999999
Q ss_pred EEECCCC---------CceEEEeCCCCCeEEEEecCC--CCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccC
Q 048801 311 VWRLPDG---------LPISVLRGHTGAVTAIAFSPR--PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITG 379 (1715)
Q Consensus 311 VWDl~tg---------~~l~~L~gH~~~VtsLafSPd--g~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g 379 (1715)
|||+.++ .++..+.+|...|++++|+|+ +. +|++++.||.|++||+.+++.+..+......
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----- 156 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL---KLACLGNDGILRLYDALEPSDLRSWTLTSEM----- 156 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS---EEEEEETTCEEEEEECSSTTCTTCCEEEEEE-----
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc---EEEEecCCCcEEEecCCChHHhccccccccc-----
Confidence 9999887 457888899999999999998 76 8999999999999999988765544321110
Q ss_pred ccCCCCCCCCCCCCCCCCcceeEEEEccC---CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEE
Q 048801 380 KSNVPSNNGPSSSNGLQSHQILCCAYNAN---GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF 456 (1715)
Q Consensus 380 ~~~~~~~~~~~~~~~~h~~~VtslafSpd---G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLaf 456 (1715)
.........+...+.+++|+|+ +.+|++++.++.+.+|+...+. ...+..+.+|...|.+++|
T Consensus 157 -------~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~h~~~i~~~~~ 222 (351)
T 3f3f_A 157 -------KVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK-------LHVAAKLPGHKSLIRSISW 222 (351)
T ss_dssp -------ESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC-------EEEEEECCCCCSCEEEEEE
T ss_pred -------cccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc-------eeeeeecCCCCcceeEEEE
Confidence 0011122345677999999997 8999999999999888776542 3446778899999999999
Q ss_pred ccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCC
Q 048801 457 SGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGG 536 (1715)
Q Consensus 457 spdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~ 536 (1715)
+|++.. ...+|++++.||.|++||+.++.....
T Consensus 223 ~p~~~~----------------------~~~~l~s~~~dg~i~iwd~~~~~~~~~------------------------- 255 (351)
T 3f3f_A 223 APSIGR----------------------WYQLIATGCKDGRIRIFKITEKLSPLA------------------------- 255 (351)
T ss_dssp CCCSSC----------------------SSEEEEEEETTSCEEEEEEEECC-----------------------------
T ss_pred CCCCCC----------------------cceEEEEEcCCCeEEEEeCCCCcCccc-------------------------
Confidence 997500 015899999999999999986431111
Q ss_pred CcccccCCCCCeeEEEeCCCCCEEEE----EecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcE
Q 048801 537 PRQRLLPTPRGVNMIVWSLDNRFVLA----AIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRT 612 (1715)
Q Consensus 537 ~~~~l~~h~~~VtslafSPDG~~LaT----gs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI 612 (1715)
.......+....+++....++. +.....+.+|+...++.+..+.+|...|++++|+| ++.+|++|+.||.|
T Consensus 256 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v 330 (351)
T 3f3f_A 256 ----SEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL-TGTILSSAGDDGKV 330 (351)
T ss_dssp ---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS-SSCCEEEEETTSCE
T ss_pred ----cCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC-CCCEEEEecCCCcE
Confidence 0011112222233333333333 33445667777777888999999999999999999 77899999999999
Q ss_pred EEEECCCCceEEEEE
Q 048801 613 IVWDIWEGTPIRIYE 627 (1715)
Q Consensus 613 ~VWDl~tgk~l~tl~ 627 (1715)
+||++.+++.+..+.
T Consensus 331 ~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 331 RLWKATYSNEFKCMS 345 (351)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred EEEecCcCcchhhee
Confidence 999999887665554
No 75
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.2e-32 Score=329.77 Aligned_cols=347 Identities=16% Similarity=0.189 Sum_probs=261.5
Q ss_pred eeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 048801 195 VHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET 274 (1715)
Q Consensus 195 V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~t 274 (1715)
+..+.|.+.|..+....... ....+.....+....+.+| ..+.+.+|++++++||+|+.||.|+|||+.+
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~---------~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 128 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDG---------HDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF 128 (420)
T ss_dssp CTTCEEEEEETTEEEEEETT---------EEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS
T ss_pred ccceeeeecCCeEEEEEcCC---------cEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC
Confidence 34566666665444333222 2222233333444445566 4555667899999999999999999999999
Q ss_pred CcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcE
Q 048801 275 AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354 (1715)
Q Consensus 275 gk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtV 354 (1715)
++.+..+.+|...|++++|+|++.+|++|+.|+.|+|||+.+++.+..+.+|...|++++|+|++. +|++++.||+|
T Consensus 129 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~s~~~d~~v 205 (420)
T 3vl1_A 129 NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR---NVLSASLDGTI 205 (420)
T ss_dssp CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTT---EEEEEETTSCE
T ss_pred cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCC---EEEEEcCCCcE
Confidence 999999999999999999999999999999999999999999999999999999999999999987 89999999999
Q ss_pred EEEecCCCCCcceecCCCCCCC-ccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccC
Q 048801 355 RIWDARYSQYSPRIYLPKPPDA-ITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVED 433 (1715)
Q Consensus 355 rIWDl~tg~~l~~i~~~~~~~~-i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~ 433 (1715)
++||+.+++.+..+........ +...... ..........+...+.+++|+|+|.+|++|+.||.|++||+.++.
T Consensus 206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--- 280 (420)
T 3vl1_A 206 RLWECGTGTTIHTFNRKENPHDGVNSIALF--VGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE--- 280 (420)
T ss_dssp EEEETTTTEEEEEECBTTBTTCCEEEEEEE--ECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC---
T ss_pred EEeECCCCceeEEeecCCCCCCCccEEEEe--cCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc---
Confidence 9999998887666543211100 0000000 000111222345668888899999999999999999999998753
Q ss_pred CCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccc
Q 048801 434 SEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVG 513 (1715)
Q Consensus 434 ~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~ 513 (1715)
........|...|.+++|+|++ ..+|++++.||.|++||++++..
T Consensus 281 -----~~~~~~~~~~~~v~~~~~~~~~-------------------------~~~l~~g~~dg~i~vwd~~~~~~----- 325 (420)
T 3vl1_A 281 -----QTIQLPSKFTCSCNSLTVDGNN-------------------------ANYIYAGYENGMLAQWDLRSPEC----- 325 (420)
T ss_dssp -----EEEEECCTTSSCEEEEEECSSC-------------------------TTEEEEEETTSEEEEEETTCTTS-----
T ss_pred -----eeEEcccccCCCceeEEEeCCC-------------------------CCEEEEEeCCCeEEEEEcCCCcC-----
Confidence 2233445688999999999986 23899999999999999986431
Q ss_pred cccccccccCCCCCCCCCCCCCCCcccccC-CCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCC---------ceEEEE
Q 048801 514 RWTRAYHLKVPPPPLPPQPPRGGPRQRLLP-TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG---------SLVHSL 583 (1715)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~-h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg---------~~l~tL 583 (1715)
+...+.. +...|.++.+ +++.+|++++.|+.|++|++..+ .....+
T Consensus 326 -----------------------~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~ 381 (420)
T 3vl1_A 326 -----------------------PVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFL 381 (420)
T ss_dssp -----------------------CSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEE
T ss_pred -----------------------chhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEE
Confidence 1222333 5567887755 57889999999999999998773 233456
Q ss_pred ecCCCCeEEEEEccCCCc---EEEEEeCCCcEEEEECCC
Q 048801 584 TGHSASSYVLDVHPFNPR---IAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 584 ~gH~~~V~sLafSP~dg~---lLaSgs~DGtI~VWDl~t 619 (1715)
.+|.+.|.+++|+|+ +. .+++++.+|.+.+|++..
T Consensus 382 ~~~~~~v~~~~~s~~-~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 382 VSNDDAVSQFCYVSD-DESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCSSCCCCEEEEECC-SSSSCEEEEEETTTEEEEEESCC
T ss_pred ccCCcceEEEEEccC-CCCcceEEEEcCCceEEEEeccC
Confidence 789999999999994 44 555667889999999854
No 76
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.2e-30 Score=304.90 Aligned_cols=284 Identities=17% Similarity=0.268 Sum_probs=237.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEec--CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR--GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL 323 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~--gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L 323 (1715)
+++|+||+++ +||+|. |++|+|||+.+++++..+. +|...|++++|+|++++||+|+.||+|+||++.+++++..+
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4679999986 777765 8999999999999888765 67888999999999999999999999999999999999999
Q ss_pred eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEE
Q 048801 324 RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCC 403 (1715)
Q Consensus 324 ~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsl 403 (1715)
.+|...+.++.+.+. .|++++.++.+++|+......... ....|...+.++
T Consensus 106 ~~h~~~~~~~~~~~~-----~l~s~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~ 156 (318)
T 4ggc_A 106 TSHSARVGSLSWNSY-----ILSSGSRSGHIHHHDVRVAEHHVA------------------------TLSGHSQEVCGL 156 (318)
T ss_dssp ECCSSCEEEEEEETT-----EEEEEETTSEEEEEETTSSSCEEE------------------------EEECCSSCEEEE
T ss_pred cCccceEEEeecCCC-----EEEEEecCCceEeeecCCCceeEE------------------------EEcCccCceEEE
Confidence 999999988777653 799999999999999876543211 122356779999
Q ss_pred EEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCc
Q 048801 404 AYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSW 483 (1715)
Q Consensus 404 afSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~ 483 (1715)
++++++.+|++++.||.|++||+.+++. ..........|.+.|.++.+++..
T Consensus 157 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~----------------------- 208 (318)
T 4ggc_A 157 RWAPDGRHLASGGNDNLVNVWPSAPGEG-----GWVPLQTFTQHQGAVKAVAWCPWQ----------------------- 208 (318)
T ss_dssp EECTTSSEEEEEETTSCEEEEESSCBTT-----BSCCSEEECCCCSCEEEEEECTTS-----------------------
T ss_pred EEcCCCCEEEEEecCcceeEEECCCCcc-----cccceeeecccCCceEEEEecCCC-----------------------
Confidence 9999999999999999999999987542 122345567788899999999865
Q ss_pred ccCc--eEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEE
Q 048801 484 FCHD--NIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL 561 (1715)
Q Consensus 484 ~~~~--~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~La 561 (1715)
.. .+++++.++.|++||..... ......+...+..++|++++..++
T Consensus 209 --~~~~~~~~~~~~~~i~lwd~~~~~------------------------------~~~~~~~~~~v~~~~~~~~~~~~~ 256 (318)
T 4ggc_A 209 --SNVLATGGGTSDRHIRIWNVCSGA------------------------------CLSAVDAHSQVCSILWSPHYKELI 256 (318)
T ss_dssp --TTEEEEEECTTTCEEEEEETTTCC------------------------------EEEEEECSSCEEEEEEETTTTEEE
T ss_pred --CcEEEEEecCCCCEEEEEeccccc------------------------------ccccccceeeeeeeeecccccceE
Confidence 22 34567889999999987533 112234566789999999999988
Q ss_pred EEe--cCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 048801 562 AAI--MDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 562 Tgs--~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk 621 (1715)
+++ .|+.|+|||+.+++++.++.+|.+.|++|+|+| ++.+|+||+.||+|+|||+.+..
T Consensus 257 ~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 257 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECCSCCC
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEECCCCC
Confidence 765 789999999999999999999999999999999 77889999999999999997654
No 77
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-31 Score=323.72 Aligned_cols=298 Identities=16% Similarity=0.297 Sum_probs=242.4
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecC-CCCCeEEEEECCCCCEEEEEeCCCeeEEEEC
Q 048801 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRG-HEGDITDLAVSSNNTLVASASNDFVIRVWRL 314 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~g-Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl 314 (1715)
+....+|...+++.+++.++..+++++.||.|+||++.+++....+.. |...|++++|+|++.+|++|+.||.|+|||+
T Consensus 84 ~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 84 VLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp EEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 344567777655444444456688888999999999999999888776 8999999999999999999999999999999
Q ss_pred CCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 315 PDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 315 ~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
.+++.+..+.+|...|.+++|.+ . +|++++.||.|++||+........ ...
T Consensus 164 ~~~~~~~~~~~~~~~v~~~~~~~--~---~l~~~~~dg~i~i~d~~~~~~~~~------------------------~~~ 214 (401)
T 4aez_A 164 ESQTKLRTMAGHQARVGCLSWNR--H---VLSSGSRSGAIHHHDVRIANHQIG------------------------TLQ 214 (401)
T ss_dssp TTCCEEEEECCCSSCEEEEEEET--T---EEEEEETTSEEEEEETTSSSCEEE------------------------EEE
T ss_pred cCCeEEEEecCCCCceEEEEECC--C---EEEEEcCCCCEEEEecccCcceee------------------------EEc
Confidence 99999999999999999999954 3 899999999999999984432111 112
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccc
Q 048801 395 LQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEE 474 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~ 474 (1715)
.|...|.+++|+|++.+|++|+.||.|++||+.++ ..+..+..|...|.+++|+|++
T Consensus 215 ~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~---------~~~~~~~~~~~~v~~~~~~p~~-------------- 271 (401)
T 4aez_A 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS---------IPKFTKTNHNAAVKAVAWCPWQ-------------- 271 (401)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS---------SEEEEECCCSSCCCEEEECTTS--------------
T ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC---------CccEEecCCcceEEEEEECCCC--------------
Confidence 35677999999999999999999999999999864 3456778899999999999976
Q ss_pred ccccccCCcccCceEEEEc--CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEE
Q 048801 475 NVPKFKNSWFCHDNIVTCS--RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIV 552 (1715)
Q Consensus 475 ~~~~~~~s~~~~~~LaSgS--~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsla 552 (1715)
...+++++ .||.|++||+.+++... ...+...|.+++
T Consensus 272 -----------~~ll~~~~gs~d~~i~i~d~~~~~~~~------------------------------~~~~~~~v~~~~ 310 (401)
T 4aez_A 272 -----------SNLLATGGGTMDKQIHFWNAATGARVN------------------------------TVDAGSQVTSLI 310 (401)
T ss_dssp -----------TTEEEEECCTTTCEEEEEETTTCCEEE------------------------------EEECSSCEEEEE
T ss_pred -----------CCEEEEecCCCCCEEEEEECCCCCEEE------------------------------EEeCCCcEEEEE
Confidence 35777765 79999999998644221 112456799999
Q ss_pred eCCCCCEEEEEe--cCCeEEEEECCCCceEE--EEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE
Q 048801 553 WSLDNRFVLAAI--MDCRICVWNAVDGSLVH--SLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 553 fSPDG~~LaTgs--~DGtI~IWDl~sg~~l~--tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~ 627 (1715)
|+|++.+|++++ .||.|+||++.++.... .+.+|...|.+++|+| ++.+|++++.||.|+||++.+++.+....
T Consensus 311 ~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 311 WSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp ECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEEEEECTTSEEEEEECCC--------
T ss_pred ECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 999999999954 89999999999976554 4679999999999999 78899999999999999999998776543
No 78
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.9e-30 Score=303.55 Aligned_cols=289 Identities=21% Similarity=0.371 Sum_probs=239.3
Q ss_pred CCCCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 048801 190 MQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKI 269 (1715)
Q Consensus 190 ~~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrI 269 (1715)
.|...|..+.|.+.+..++... .+.....|.....+....+.+|...|.+++|+|++++|++|+.||.|+|
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~---------~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSS---------ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEE---------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ccCCcEEEEEECCCCCEEEEee---------CCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 5677889999888775444332 2222333444566788899999999999999999999999999999999
Q ss_pred EeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec
Q 048801 270 WSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS 349 (1715)
Q Consensus 270 WDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS 349 (1715)
||+.+++++..+.+|...|.+++|+|++.+|++|+.||.|++||+.+++.+..+..|...|.+++|+|++. +|++++
T Consensus 92 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~ 168 (312)
T 4ery_A 92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---LIVSSS 168 (312)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS---EEEEEE
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCC---EEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 899999
Q ss_pred CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCC
Q 048801 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 350 ~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~ 429 (1715)
.||.|++||+.+++.+..+.. .+...+.+++|+|++.+|++++.||.|++||+.++
T Consensus 169 ~d~~i~~wd~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 224 (312)
T 4ery_A 169 YDGLCRIWDTASGQCLKTLID------------------------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 224 (312)
T ss_dssp TTSCEEEEETTTCCEEEEECC------------------------SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT
T ss_pred CCCcEEEEECCCCceeeEEec------------------------cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 999999999988765443311 12446899999999999999999999999999763
Q ss_pred CccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccC
Q 048801 430 SVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH 509 (1715)
Q Consensus 430 ~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~ 509 (1715)
+ .+..+.+|...+.
T Consensus 225 ~---------~~~~~~~~~~~~~--------------------------------------------------------- 238 (312)
T 4ery_A 225 K---------CLKTYTGHKNEKY--------------------------------------------------------- 238 (312)
T ss_dssp E---------EEEEECSSCCSSS---------------------------------------------------------
T ss_pred c---------EEEEEEecCCceE---------------------------------------------------------
Confidence 2 2333333322110
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCC
Q 048801 510 GKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSAS 589 (1715)
Q Consensus 510 ~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~ 589 (1715)
.+......+++.+|++|+.||.|++||+.+++.+..+.+|...
T Consensus 239 -------------------------------------~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~ 281 (312)
T 4ery_A 239 -------------------------------------CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 281 (312)
T ss_dssp -------------------------------------CCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSC
T ss_pred -------------------------------------EEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCc
Confidence 0112223457889999999999999999999999999999999
Q ss_pred eEEEEEccCCCcEEEEEe--CCCcEEEEECC
Q 048801 590 SYVLDVHPFNPRIAMSAG--YDGRTIVWDIW 618 (1715)
Q Consensus 590 V~sLafSP~dg~lLaSgs--~DGtI~VWDl~ 618 (1715)
|.+++|+| ++.++++++ .||+|+||+..
T Consensus 282 v~~~~~~p-~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 282 VISTACHP-TENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEEEECS-SSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEeecC-cCCceEEEEccCCccEEEecCC
Confidence 99999999 677888886 69999999864
No 79
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.6e-30 Score=320.82 Aligned_cols=297 Identities=24% Similarity=0.315 Sum_probs=249.6
Q ss_pred EEEEecCCCCCe-EEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEE
Q 048801 277 CLASCRGHEGDI-TDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCR 355 (1715)
Q Consensus 277 ~l~tL~gHs~~V-tsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVr 355 (1715)
....+.+|...| +++.+ ++.+|++|+.||+|++||+.+++.+..+.+|.+.|++++|++++ +|++|+.||+|+
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~----~l~s~s~dg~i~ 186 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG----ILVSGSTDRTVR 186 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT----EEEEEETTSCEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC----EEEEEeCCCCEE
Confidence 445788998875 66666 57799999999999999999999999999999999999999986 799999999999
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEc--cCCCeEEEecCCCeEEEEeCCCCCccC
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYN--ANGTVFVTGSSDTFARVWSACKSSVED 433 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafS--pdG~~LatGs~DG~IrVWDl~t~~~~~ 433 (1715)
+||+.+++.+..+ ..|...|.+++|+ +++.+|++|+.||.|++||+.+.....
T Consensus 187 vwd~~~~~~~~~~-------------------------~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~ 241 (464)
T 3v7d_B 187 VWDIKKGCCTHVF-------------------------EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241 (464)
T ss_dssp EEETTTTEEEEEE-------------------------CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred EEECCCCcEEEEE-------------------------CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence 9999988754433 2356779999998 578999999999999999998754321
Q ss_pred CCC--------------CceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEE
Q 048801 434 SEQ--------------PIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAI 499 (1715)
Q Consensus 434 ~~~--------------~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIr 499 (1715)
... ....+..+.+|...|.++...+ ..|++++.||.|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------------------------~~l~~~~~d~~i~ 293 (464)
T 3v7d_B 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG----------------------------NIVVSGSYDNTLI 293 (464)
T ss_dssp -----CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEET----------------------------TEEEEEETTSCEE
T ss_pred cccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCC----------------------------CEEEEEeCCCeEE
Confidence 100 0112456778888888774432 6899999999999
Q ss_pred EEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCce
Q 048801 500 IWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL 579 (1715)
Q Consensus 500 IWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~ 579 (1715)
+||+.+++ ....+.+|...|.+++|+|++.+|++|+.||.|++||+.++++
T Consensus 294 vwd~~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~ 344 (464)
T 3v7d_B 294 VWDVAQMK-----------------------------CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL 344 (464)
T ss_dssp EEETTTTE-----------------------------EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred EEECCCCc-----------------------------EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Confidence 99998643 2334566888999999999999999999999999999999999
Q ss_pred EEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 580 VHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 580 l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
+..+.+|...|.+++|+ +.+|++|+.||.|++||+.++.....+. +...+..++|++++.+|++++ ||.|+|||+
T Consensus 345 ~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~ 419 (464)
T 3v7d_B 345 MYTLQGHTALVGLLRLS---DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNL 419 (464)
T ss_dssp EEEECCCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEET
T ss_pred EEEEeCCCCcEEEEEEc---CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEEC
Confidence 99999999999999996 4789999999999999999988777765 556777889999999999998 899999999
Q ss_pred CCCcccc
Q 048801 660 GQGESQK 666 (1715)
Q Consensus 660 ~tGe~~k 666 (1715)
.+|+.+.
T Consensus 420 ~~g~~~~ 426 (464)
T 3v7d_B 420 RSGKLVH 426 (464)
T ss_dssp TTCCEEE
T ss_pred CCCcEEe
Confidence 9998764
No 80
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.3e-30 Score=308.06 Aligned_cols=297 Identities=13% Similarity=0.084 Sum_probs=240.0
Q ss_pred eEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---EEEEecCCCCCeEEEEECCCCC-EEEEEeCCCeeE
Q 048801 235 NIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF---CLASCRGHEGDITDLAVSSNNT-LVASASNDFVIR 310 (1715)
Q Consensus 235 ~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk---~l~tL~gHs~~VtsLafSpDg~-lLASGS~DGtIr 310 (1715)
.+....+|.+.|++++|+|++.+|++|+.||.|+||++.++. ....+.+|...|++++|+|+++ +|++|+.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred ceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 344557899999999999999999999999999999998887 3455668999999999999999 999999999999
Q ss_pred EEEC-CCCCceEEEeC--CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCC---------CCCcceecCCCCCCCcc
Q 048801 311 VWRL-PDGLPISVLRG--HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY---------SQYSPRIYLPKPPDAIT 378 (1715)
Q Consensus 311 VWDl-~tg~~l~~L~g--H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~t---------g~~l~~i~~~~~~~~i~ 378 (1715)
+||+ .++. ...+.+ |...|++++|+| +. +|++++.|+.|++||+.+ ++.+..+
T Consensus 83 ~wd~~~~~~-~~~~~~~~~~~~v~~l~~~~-~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---------- 147 (342)
T 1yfq_A 83 KVDLIGSPS-FQALTNNEANLGICRICKYG-DD---KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT---------- 147 (342)
T ss_dssp EECSSSSSS-EEECBSCCCCSCEEEEEEET-TT---EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS----------
T ss_pred EEEeccCCc-eEeccccCCCCceEEEEeCC-CC---EEEEEcCCCeEEEEcccccccccccccCCeeeEE----------
Confidence 9999 7765 477888 999999999999 66 899999999999999875 3322111
Q ss_pred CccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCC-CCccCCCCCceeeeeecCCCCCeeEEEEc
Q 048801 379 GKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACK-SSVEDSEQPIHELDVLSGHENDVNYVQFS 457 (1715)
Q Consensus 379 g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t-~~~~~~~~~~~~l~~l~gH~~~V~sLafs 457 (1715)
.+...|.+++|++++ |++++.++.|++||+.+ ... ........|...|.+++|+
T Consensus 148 ----------------~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~~~i~~i~~~ 202 (342)
T 1yfq_A 148 ----------------KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD-------NGTIEESGLKYQIRDVALL 202 (342)
T ss_dssp ----------------SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTC-------CCEEEECSCSSCEEEEEEC
T ss_pred ----------------eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccc-------cceeeecCCCCceeEEEEC
Confidence 146679999999987 88999999999999986 421 1223445788899999999
Q ss_pred c-CcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCC--ccCcccccccccccccCCCCCCCCCCCC
Q 048801 458 G-CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR--RSHGKVGRWTRAYHLKVPPPPLPPQPPR 534 (1715)
Q Consensus 458 p-dg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 534 (1715)
| ++ ..|++++.||.|++|++... ..... ....+....
T Consensus 203 ~~~~--------------------------~~l~~~~~dg~i~i~~~~~~~~~~~~~-----~~~~~~~~~--------- 242 (342)
T 1yfq_A 203 PKEQ--------------------------EGYACSSIDGRVAVEFFDDQGDDYNSS-----KRFAFRCHR--------- 242 (342)
T ss_dssp SGGG--------------------------CEEEEEETTSEEEEEECCTTCCSTTCT-----TCEEEECCC---------
T ss_pred CCCC--------------------------CEEEEEecCCcEEEEEEcCCCcccccc-----cceeeeccc---------
Confidence 9 76 79999999999999999864 10000 000000000
Q ss_pred CCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecC-CCCeEEEEEccCCCcEEEEEeCCCc-E
Q 048801 535 GGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH-SASSYVLDVHPFNPRIAMSAGYDGR-T 612 (1715)
Q Consensus 535 g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH-~~~V~sLafSP~dg~lLaSgs~DGt-I 612 (1715)
....-..|...|.+++|+|++++|++|+.||.|++||+.+++++..+.+| ...|.+++ | ++.+|++|+.||. .
T Consensus 243 --~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~-~~~~l~s~s~Dg~~~ 317 (342)
T 1yfq_A 243 --LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C-SDNILCLATSDDTFK 317 (342)
T ss_dssp --CCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-CSSEEEEEEECTHHH
T ss_pred --ccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-CCCeEEEEecCCccc
Confidence 00001134558999999999999999999999999999999999999998 99999999 7 7889999999998 5
Q ss_pred EEEE
Q 048801 613 IVWD 616 (1715)
Q Consensus 613 ~VWD 616 (1715)
+.|.
T Consensus 318 ~~~~ 321 (342)
T 1yfq_A 318 TNAA 321 (342)
T ss_dssp HCSS
T ss_pred cccc
Confidence 5555
No 81
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.9e-30 Score=308.23 Aligned_cols=296 Identities=17% Similarity=0.264 Sum_probs=230.1
Q ss_pred CCCCCceeeeeeccccC-cccccCCCCcccccccccccCccccc-----cceeEEEEcCCCCCeEEEEEcCCCCEEEEEe
Q 048801 189 HMQADQVHGLSLREIGG-GFKKHHRAPSVCSACYAIAKPSTMVQ-----KMQNIKKLRGHRDAVYCAIFDRSGRFVITGS 262 (1715)
Q Consensus 189 ~~~~d~V~~ls~~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS 262 (1715)
..|...|..+.+.+.+. .+..+.... ....|.+. ...++..|.+|...|++++|+|+|++|++|+
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~---------~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDK---------TLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS 84 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTS---------EEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ccccceEEEEEccCCCccEEEEecCCc---------cEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence 35778888888876442 233322222 22222221 2356788999999999999999999999999
Q ss_pred CCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCC--
Q 048801 263 DDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPS-- 340 (1715)
Q Consensus 263 ~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~-- 340 (1715)
.|++|+|||+.+++.+..+.+|...|.+++|+|++.+|++|+.|++|+|||+. +.++..+.+|...|.+++|+|...
T Consensus 85 ~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~ 163 (319)
T 3frx_A 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKAD 163 (319)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC----
T ss_pred CCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCC
Confidence 99999999999999999999999999999999999999999999999999985 667888999999999999999642
Q ss_pred -cceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC
Q 048801 341 -AIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT 419 (1715)
Q Consensus 341 -~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG 419 (1715)
...+|++++.|+.|++||+.+.+....+ ..|...|.+++|+|+|.+|++|+.||
T Consensus 164 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-------------------------~~h~~~v~~~~~sp~g~~l~s~~~dg 218 (319)
T 3frx_A 164 DDSVTIISAGNDKMVKAWNLNQFQIEADF-------------------------IGHNSNINTLTASPDGTLIASAGKDG 218 (319)
T ss_dssp --CCEEEEEETTSCEEEEETTTTEEEEEE-------------------------CCCCSCEEEEEECTTSSEEEEEETTC
T ss_pred CCccEEEEEeCCCEEEEEECCcchhheee-------------------------cCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 1127999999999999999876543322 23567899999999999999999999
Q ss_pred eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEE
Q 048801 420 FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAI 499 (1715)
Q Consensus 420 ~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIr 499 (1715)
.|+|||+.+++ .+..+.. ...|.+++|+|++ ..|++++ ++.++
T Consensus 219 ~i~iwd~~~~~---------~~~~~~~-~~~v~~~~~sp~~--------------------------~~la~~~-~~~i~ 261 (319)
T 3frx_A 219 EIMLWNLAAKK---------AMYTLSA-QDEVFSLAFSPNR--------------------------YWLAAAT-ATGIK 261 (319)
T ss_dssp EEEEEETTTTE---------EEEEEEC-CSCEEEEEECSSS--------------------------SEEEEEE-TTEEE
T ss_pred eEEEEECCCCc---------EEEEecC-CCcEEEEEEcCCC--------------------------CEEEEEc-CCCcE
Confidence 99999998743 3455554 4589999999986 5666665 45699
Q ss_pred EEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCC
Q 048801 500 IWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDG 577 (1715)
Q Consensus 500 IWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg 577 (1715)
+|++.......... .........+...+.+++|+|||++|++|+.|+.|+|||+.++
T Consensus 262 v~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 262 VFSLDPQYLVDDLR---------------------PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEETTEEEEEEEC---------------------CCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEeCcCeeeeccC---------------------ccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 99987643221110 0000112234567899999999999999999999999998654
No 82
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=7e-31 Score=324.69 Aligned_cols=298 Identities=20% Similarity=0.356 Sum_probs=240.9
Q ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC
Q 048801 237 KKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD 316 (1715)
Q Consensus 237 ~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t 316 (1715)
....+|...|+|++| ++++|++|+.||.|+|||+.+++.+..+.+|.+.|++++| ++.+|++|+.||+|+|||+.+
T Consensus 127 ~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 127 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred ecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence 334567888999888 7899999999999999999999999999999999999999 788999999999999999999
Q ss_pred CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCC
Q 048801 317 GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396 (1715)
Q Consensus 317 g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h 396 (1715)
++.+..+.+|...|.+++|+++ +|++|+.||.|++||+.++....... ....|
T Consensus 203 ~~~~~~~~~h~~~v~~l~~~~~-----~l~s~s~dg~i~vwd~~~~~~~~~~~----------------------~~~~~ 255 (435)
T 1p22_A 203 GEMLNTLIHHCEAVLHLRFNNG-----MMVTCSKDRSIAVWDMASPTDITLRR----------------------VLVGH 255 (435)
T ss_dssp CCEEEEECCCCSCEEEEECCTT-----EEEEEETTSCEEEEECSSSSCCEEEE----------------------EECCC
T ss_pred CcEEEEEcCCCCcEEEEEEcCC-----EEEEeeCCCcEEEEeCCCCCCceeee----------------------EecCC
Confidence 9999999999999999999753 79999999999999998766432111 12335
Q ss_pred CcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccc
Q 048801 397 SHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENV 476 (1715)
Q Consensus 397 ~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~ 476 (1715)
...|.+++| ++.+|++|+.||.|++||+.++ ..+..+.+|...|.++.|.+
T Consensus 256 ~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~------------------ 306 (435)
T 1p22_A 256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC---------EFVRTLNGHKRGIACLQYRD------------------ 306 (435)
T ss_dssp SSCEEEEEE--ETTEEEEEETTSEEEEEETTTC---------CEEEEEECCSSCEEEEEEET------------------
T ss_pred CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC---------cEEEEEcCCCCcEEEEEeCC------------------
Confidence 677999999 7889999999999999999875 34677889999999999953
Q ss_pred ccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC
Q 048801 477 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD 556 (1715)
Q Consensus 477 ~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD 556 (1715)
..|++|+.||.|++||+.++. ....+.+|...|.+++| +
T Consensus 307 ----------~~l~~g~~dg~i~iwd~~~~~-----------------------------~~~~~~~h~~~v~~~~~--~ 345 (435)
T 1p22_A 307 ----------RLVVSGSSDNTIRLWDIECGA-----------------------------CLRVLEGHEELVRCIRF--D 345 (435)
T ss_dssp ----------TEEEEEETTSCEEEEETTTCC-----------------------------EEEEECCCSSCEEEEEC--C
T ss_pred ----------CEEEEEeCCCeEEEEECCCCC-----------------------------EEEEEeCCcCcEEEEEe--c
Confidence 689999999999999998643 23445668889999999 7
Q ss_pred CCEEEEEecCCeEEEEECCCCc---------eEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE
Q 048801 557 NRFVLAAIMDCRICVWNAVDGS---------LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 557 G~~LaTgs~DGtI~IWDl~sg~---------~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~ 627 (1715)
+.+|++|+.||.|+|||+.++. ++..+.+|.+.|++++| ++.+|++|+.||+|+|||+.++.......
T Consensus 346 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~ 422 (435)
T 1p22_A 346 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF---DEFQIVSSSHDDTILIWDFLNDPAAQAEP 422 (435)
T ss_dssp SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE---CSSCEEECCSSSEEEEEC-----------
T ss_pred CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe---CCCEEEEEeCCCEEEEEECCCCCCcccCC
Confidence 8999999999999999997766 88999999999999999 45778999999999999998776554443
Q ss_pred cccceEEEEEEc
Q 048801 628 IGRFKLVDGKFS 639 (1715)
Q Consensus 628 ~h~~~V~svafS 639 (1715)
...+...+.|.
T Consensus 423 -~~~~~~~~~~~ 433 (435)
T 1p22_A 423 -PRSPSRTYTYI 433 (435)
T ss_dssp ------------
T ss_pred -CCCCccceeee
Confidence 22344444443
No 83
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.98 E-value=5.7e-32 Score=325.56 Aligned_cols=307 Identities=10% Similarity=0.055 Sum_probs=232.1
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC--CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEe
Q 048801 281 CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG--LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWD 358 (1715)
Q Consensus 281 L~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg--~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWD 358 (1715)
+..|.+.|++++|+|++++||+|+.|+.|+|||+.++ ..+..+.+|...|++++|+|++. +|++++.||+|++||
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~---~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSN---RIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTC---CEEEEETTSSEEEC-
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCC---EEEEEeCCCeEEEEE
Confidence 4446789999999999999999999999999999988 77888999999999999999987 899999999999999
Q ss_pred cCCCC-CcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCC
Q 048801 359 ARYSQ-YSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQP 437 (1715)
Q Consensus 359 l~tg~-~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~ 437 (1715)
+.++. ..... ....|...|.+++|+|++.+|++|+.|+.|++||+.++..
T Consensus 84 ~~~~~~~~~~~-----------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------ 134 (377)
T 3dwl_C 84 KRPDGTWKQTL-----------------------VLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND------ 134 (377)
T ss_dssp -----CCCCEE-----------------------ECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----------
T ss_pred cCCCCceeeee-----------------------EecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc------
Confidence 98765 11111 1223567899999999999999999999999999986531
Q ss_pred ceeeeeecC-CCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccc
Q 048801 438 IHELDVLSG-HENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWT 516 (1715)
Q Consensus 438 ~~~l~~l~g-H~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~ 516 (1715)
......+.+ |...|.+++|+|++ .+|++++.||.|++||+.+........
T Consensus 135 ~~~~~~~~~~h~~~v~~~~~~~~~--------------------------~~l~~~~~d~~i~iwd~~~~~~~~~~~--- 185 (377)
T 3dwl_C 135 WWVSKHLKRPLRSTILSLDWHPNN--------------------------VLLAAGCADRKAYVLSAYVRDVDAKPE--- 185 (377)
T ss_dssp CCCCEEECSSCCSCEEEEEECTTS--------------------------SEEEEEESSSCEEEEEECCSSCC-CCC---
T ss_pred ceeeeEeecccCCCeEEEEEcCCC--------------------------CEEEEEeCCCEEEEEEEEecccCCCcc---
Confidence 123456666 99999999999986 799999999999999997543211100
Q ss_pred ccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCce----EEEEecCCCCeEE
Q 048801 517 RAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL----VHSLTGHSASSYV 592 (1715)
Q Consensus 517 ~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~----l~tL~gH~~~V~s 592 (1715)
..........+.....+ .|...|.+++|+|+|++|++++.|+.|+|||+.+++. +..+.+|...|.+
T Consensus 186 --------~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 256 (377)
T 3dwl_C 186 --------ASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRS 256 (377)
T ss_dssp --------SCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEE
T ss_pred --------ccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEE
Confidence 00000000112233344 8889999999999999999999999999999999988 8889999999999
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEECCCCc--------------------------e-E---------EEEE---------
Q 048801 593 LDVHPFNPRIAMSAGYDGRTIVWDIWEGT--------------------------P-I---------RIYE--------- 627 (1715)
Q Consensus 593 LafSP~dg~lLaSgs~DGtI~VWDl~tgk--------------------------~-l---------~tl~--------- 627 (1715)
++|+| ++.+|++|+.|+.+ +|+...+. . . ..+.
T Consensus 257 ~~~s~-~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 334 (377)
T 3dwl_C 257 LLWAN-ESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQ 334 (377)
T ss_dssp EEEEE-TTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------------------
T ss_pred EEEcC-CCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccc
Confidence 99999 77888888766655 67654211 0 0 1111
Q ss_pred -------cccceEEEEEEcCCC-C---EEEEEeCCCeEEEEEC
Q 048801 628 -------IGRFKLVDGKFSPDG-T---SIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 628 -------~h~~~V~svafSPDG-~---~LAsgs~DG~I~IWdl 659 (1715)
.|...|+++++.++. . .|++|+.||.|+|||+
T Consensus 335 ~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 335 SISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp --CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 278889999876543 3 6999999999999985
No 84
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.98 E-value=1.2e-30 Score=306.33 Aligned_cols=262 Identities=21% Similarity=0.372 Sum_probs=213.8
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC--CcEEEEecCCCCCeEEEEECCC--CCEEEEEeCCCeeEE
Q 048801 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMET--AFCLASCRGHEGDITDLAVSSN--NTLVASASNDFVIRV 311 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~t--gk~l~tL~gHs~~VtsLafSpD--g~lLASGS~DGtIrV 311 (1715)
+..+.+|.+.|++++|+|+|++||||+.|++|+||++.+ ++++.++.+|.+.|++++|+++ +.+||+|+.|++|+|
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 346789999999999999999999999999999999974 4778999999999999999864 899999999999999
Q ss_pred EECCCCC--ceEEEeCCCCCeEEEEecCC--CCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 312 WRLPDGL--PISVLRGHTGAVTAIAFSPR--PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 312 WDl~tg~--~l~~L~gH~~~VtsLafSPd--g~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
||+.++. .+..+.+|...|.+++|+|+ +. +|++++.||+|++||+..+.....
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~---~l~s~s~d~~v~~wd~~~~~~~~~-------------------- 138 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP---MLLVASSDGKVSVVEFKENGTTSP-------------------- 138 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCS---EEEEEETTSEEEEEEBCSSSCBCC--------------------
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCc---EEEEEECCCcEEEEEecCCCceee--------------------
Confidence 9998874 66778899999999999997 55 899999999999999976532111
Q ss_pred CCCCCCCCCCcceeEEEEccC-------------CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEE
Q 048801 388 GPSSSNGLQSHQILCCAYNAN-------------GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYV 454 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafSpd-------------G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sL 454 (1715)
.....|...|.+++|+|+ +++|++|+.|+.|+|||+.++. ........+.+|...|.++
T Consensus 139 ---~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~-----~~~~~~~~l~~H~~~V~~v 210 (297)
T 2pm7_B 139 ---IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA-----QTYVLESTLEGHSDWVRDV 210 (297)
T ss_dssp ---EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT-----TEEEEEEEECCCSSCEEEE
T ss_pred ---eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC-----ceEEEEEEecCCCCceEEE
Confidence 112345677999999997 5799999999999999997642 1122456788999999999
Q ss_pred EEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCC
Q 048801 455 QFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534 (1715)
Q Consensus 455 afspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 534 (1715)
+|+|++. ...+|++++.|++|+|||+.+.... +..
T Consensus 211 ~~sp~~~-----------------------~~~~las~s~D~~v~iWd~~~~~~~-----~~~----------------- 245 (297)
T 2pm7_B 211 AWSPTVL-----------------------LRSYMASVSQDRTCIIWTQDNEQGP-----WKK----------------- 245 (297)
T ss_dssp EECCCCS-----------------------SSEEEEEEETTSCEEEEEESSTTSC-----CEE-----------------
T ss_pred EECCCCC-----------------------CceEEEEEECCCcEEEEEeCCCCCc-----cce-----------------
Confidence 9999730 0268999999999999998753200 000
Q ss_pred CCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECC
Q 048801 535 GGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV 575 (1715)
Q Consensus 535 g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~ 575 (1715)
.......|...|.+++|+|+|++|++++.|+.|+||+..
T Consensus 246 --~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 246 --TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp --EESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred --eeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 000113456789999999999999999999999999975
No 85
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=4.3e-30 Score=301.68 Aligned_cols=266 Identities=20% Similarity=0.255 Sum_probs=213.5
Q ss_pred EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC--CCceEEEeCCCCCeEEEEecCC--CCcceEEEEecCCCc
Q 048801 278 LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD--GLPISVLRGHTGAVTAIAFSPR--PSAIYQLLSSSDDGT 353 (1715)
Q Consensus 278 l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t--g~~l~~L~gH~~~VtsLafSPd--g~~~~~LaSgS~DGt 353 (1715)
+..+.+|...|++++|+|+|++||+|+.|++|+||++.+ ++++.++.+|.+.|++++|+++ +. +|++|+.||+
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~---~l~s~s~D~~ 78 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT---ILASCSYDGK 78 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCS---EEEEEETTTE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCC---EEEEEcCCCE
Confidence 346789999999999999999999999999999999974 4678999999999999999864 55 8999999999
Q ss_pred EEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC--CCeEEEecCCCeEEEEeCCCCCc
Q 048801 354 CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN--GTVFVTGSSDTFARVWSACKSSV 431 (1715)
Q Consensus 354 VrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd--G~~LatGs~DG~IrVWDl~t~~~ 431 (1715)
|++||+.++...... ....|...|.+++|+|+ |.+|++|+.||.|++||+.+...
T Consensus 79 v~iWd~~~~~~~~~~-----------------------~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~ 135 (297)
T 2pm7_B 79 VMIWKEENGRWSQIA-----------------------VHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT 135 (297)
T ss_dssp EEEEEBSSSCBCCCE-----------------------EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC
T ss_pred EEEEEcCCCceEEEE-----------------------EeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc
Confidence 999999876421111 11235677999999997 89999999999999999976421
Q ss_pred cCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcc
Q 048801 432 EDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGK 511 (1715)
Q Consensus 432 ~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~ 511 (1715)
.....+.+|...|.+++|+|++.. . ++.
T Consensus 136 -------~~~~~~~~h~~~v~~~~~~p~~~~-------------------------~------~~~-------------- 163 (297)
T 2pm7_B 136 -------TSPIIIDAHAIGVNSASWAPATIE-------------------------E------DGE-------------- 163 (297)
T ss_dssp -------BCCEEEECCSSCEEEEEECCCC---------------------------------------------------
T ss_pred -------eeeeeeecccCccceEeecCCccc-------------------------c------ccc--------------
Confidence 113456789999999999986410 0 000
Q ss_pred cccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCc----eEEEEecCC
Q 048801 512 VGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS----LVHSLTGHS 587 (1715)
Q Consensus 512 ~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~----~l~tL~gH~ 587 (1715)
....+++++|++|+.|++|+|||+.++. +...+.+|.
T Consensus 164 ---------------------------------------~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~ 204 (297)
T 2pm7_B 164 ---------------------------------------HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS 204 (297)
T ss_dssp ---------------------------------------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS
T ss_pred ---------------------------------------CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCC
Confidence 0012357789999999999999998776 667889999
Q ss_pred CCeEEEEEccCC--CcEEEEEeCCCcEEEEECCCCc--e-EEEE--EcccceEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 588 ASSYVLDVHPFN--PRIAMSAGYDGRTIVWDIWEGT--P-IRIY--EIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 588 ~~V~sLafSP~d--g~lLaSgs~DGtI~VWDl~tgk--~-l~tl--~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
..|.+++|+|++ +.+|++|+.||+|+|||+.++. . ...+ ..+...|.+++|+|+|++||+++.||.|+||+..
T Consensus 205 ~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 205 DWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 999999999954 5899999999999999997753 1 2223 3466789999999999999999999999999975
No 86
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=2.4e-30 Score=307.18 Aligned_cols=312 Identities=18% Similarity=0.199 Sum_probs=239.2
Q ss_pred ccceeEEEEcCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEeCCC-CcEE-EEecCCCCCeEEEEECCCCCEEEEEeC
Q 048801 231 QKMQNIKKLRGHRDAVYCAIFDRS---GRFVITGSDDRLVKIWSMET-AFCL-ASCRGHEGDITDLAVSSNNTLVASASN 305 (1715)
Q Consensus 231 ~~~k~l~~L~GH~~~Vt~VafSpD---G~~LaTGS~DGtIrIWDl~t-gk~l-~tL~gHs~~VtsLafSpDg~lLASGS~ 305 (1715)
...+.+..+.+|.+.|+|++|+|+ |++|++|+.||.|+||++.+ +..+ ..+.+|...|++++|+|++++|++|+.
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 345677889999999999999999 69999999999999999987 5555 788999999999999999999999999
Q ss_pred CCeeEEEECCCCCceEEEeCCCCCeEEEEe--cCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCC
Q 048801 306 DFVIRVWRLPDGLPISVLRGHTGAVTAIAF--SPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNV 383 (1715)
Q Consensus 306 DGtIrVWDl~tg~~l~~L~gH~~~VtsLaf--SPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~ 383 (1715)
||.|+|||+.++..+. +.+|...|++++| ++++. +|++++.||.|++||+.+++.+..+..
T Consensus 107 dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~------------- 169 (368)
T 3mmy_A 107 DKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYS---CVMTGSWDKTLKFWDTRSSNPMMVLQL------------- 169 (368)
T ss_dssp TSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCE---EEEEEETTSEEEEECSSCSSCSEEEEC-------------
T ss_pred CCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCC---EEEEccCCCcEEEEECCCCcEEEEEec-------------
Confidence 9999999999988766 5569999999999 77775 899999999999999998876655432
Q ss_pred CCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccc
Q 048801 384 PSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVAS 463 (1715)
Q Consensus 384 ~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as 463 (1715)
...+.++.+. +..+++++.++.+.+|++..... ........+...+.++.+.+...
T Consensus 170 -------------~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-- 225 (368)
T 3mmy_A 170 -------------PERCYCADVI--YPMAVVATAERGLIVYQLENQPS-------EFRRIESPLKHQHRCVAIFKDKQ-- 225 (368)
T ss_dssp -------------SSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCE-------EEEECCCSCSSCEEEEEEEECTT--
T ss_pred -------------CCCceEEEec--CCeeEEEeCCCcEEEEEeccccc-------hhhhccccccCCCceEEEcccCC--
Confidence 1235566665 44788888999999999976421 11122223344566666655430
Q ss_pred cccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccC
Q 048801 464 RSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLP 543 (1715)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~ 543 (1715)
.....+++++.||.|++|++.......... .+.... ..........
T Consensus 226 --------------------~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~------~~~~~~--------~~~~~~~~~~ 271 (368)
T 3mmy_A 226 --------------------NKPTGFALGSIEGRVAIHYINPPNPAKDNF------TFKCHR--------SNGTNTSAPQ 271 (368)
T ss_dssp --------------------SCEEEEEEEETTSEEEEEESSCSCHHHHSE------EEECSE--------EC----CCCE
T ss_pred --------------------CCCCeEEEecCCCcEEEEecCCCCccccce------eeeeee--------cccccccccc
Confidence 012459999999999999998643100000 000000 0000011223
Q ss_pred CCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 544 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 544 h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
|...|++++|+|++++|++|+.||.|+|||+.+++++..+.+|...|++++|+| ++.+|++|+.|+..+.|++.
T Consensus 272 ~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 272 DIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNH-NGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp EECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECT-TSSCEEEEECCCSTTCGGGC
T ss_pred cccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECC-CCCeEEEEeccccccccccc
Confidence 344799999999999999999999999999999999999999999999999999 77888899988866655544
No 87
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=1.5e-29 Score=313.19 Aligned_cols=300 Identities=21% Similarity=0.396 Sum_probs=255.9
Q ss_pred ccccccccCccccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCC
Q 048801 218 SACYAIAKPSTMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNN 297 (1715)
Q Consensus 218 ~~~~~~~~~~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg 297 (1715)
++..+.....|.+.+.+.+..+.+|.+.|++++|+ +.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +
T Consensus 134 sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~ 209 (445)
T 2ovr_B 134 SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--E 209 (445)
T ss_dssp EEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--T
T ss_pred EEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--C
Confidence 33344444455666788899999999999999998 6799999999999999999999999999999999999995 6
Q ss_pred CEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCc
Q 048801 298 TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAI 377 (1715)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i 377 (1715)
.+|++|+.||+|++||+.+++.+..+.+|...|.+++| ++. +|++++.||.|++||+.+++.+..+.
T Consensus 210 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~-------- 276 (445)
T 2ovr_B 210 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGR---RVVSGAYDFMVKVWDPETETCLHTLQ-------- 276 (445)
T ss_dssp TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSS---CEEEEETTSCEEEEEGGGTEEEEEEC--------
T ss_pred CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCC---EEEEEcCCCEEEEEECCCCcEeEEec--------
Confidence 78999999999999999999999999999999999999 444 79999999999999998876544431
Q ss_pred cCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEc
Q 048801 378 TGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS 457 (1715)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafs 457 (1715)
.|...|.+++| ++.+|++|+.||.|++||+.+++ .+..+.+|...+.++.+.
T Consensus 277 -----------------~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~---------~~~~~~~~~~~v~~~~~~ 328 (445)
T 2ovr_B 277 -----------------GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN---------CIHTLTGHQSLTSGMELK 328 (445)
T ss_dssp -----------------CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCC---------EEEEECCCCSCEEEEEEE
T ss_pred -----------------CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCC---------EEEEEcCCcccEEEEEEe
Confidence 24567999999 88999999999999999998753 467788999999998886
Q ss_pred cCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCC
Q 048801 458 GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP 537 (1715)
Q Consensus 458 pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 537 (1715)
+ +.|++|+.||.|++||+.+++....+
T Consensus 329 ~----------------------------~~l~~~~~dg~i~vwd~~~~~~~~~~------------------------- 355 (445)
T 2ovr_B 329 D----------------------------NILVSGNADSTVKIWDIKTGQCLQTL------------------------- 355 (445)
T ss_dssp T----------------------------TEEEEEETTSCEEEEETTTCCEEEEE-------------------------
T ss_pred C----------------------------CEEEEEeCCCeEEEEECCCCcEEEEE-------------------------
Confidence 4 58999999999999999865422111
Q ss_pred cccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEE-----ecCCCCeEEEEEccCCCcEEEEEeCCCc-
Q 048801 538 RQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSL-----TGHSASSYVLDVHPFNPRIAMSAGYDGR- 611 (1715)
Q Consensus 538 ~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL-----~gH~~~V~sLafSP~dg~lLaSgs~DGt- 611 (1715)
.....|...|.+++|+ +.+|++|+.||.|+|||+.+++.+..+ .+|.+.|++++|+| ++.++++|+.||+
T Consensus 356 -~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~ 431 (445)
T 2ovr_B 356 -QGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTE 431 (445)
T ss_dssp -CSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSS
T ss_pred -ccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccCCCC
Confidence 0012367789999995 689999999999999999999999988 47889999999999 7899999999998
Q ss_pred ---EEEEECCC
Q 048801 612 ---TIVWDIWE 619 (1715)
Q Consensus 612 ---I~VWDl~t 619 (1715)
|.|||+..
T Consensus 432 ~~~l~v~df~~ 442 (445)
T 2ovr_B 432 ETKLLVLDFDV 442 (445)
T ss_dssp CCEEEEEECCC
T ss_pred ccEEEEEECCC
Confidence 99999864
No 88
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=1.6e-30 Score=315.59 Aligned_cols=288 Identities=11% Similarity=0.078 Sum_probs=222.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC-------cEEEEeCCCCcE----------EEEecCCCCCeEEEEECCCCCEEEEEe-
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDR-------LVKIWSMETAFC----------LASCRGHEGDITDLAVSSNNTLVASAS- 304 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DG-------tIrIWDl~tgk~----------l~tL~gHs~~VtsLafSpDg~lLASGS- 304 (1715)
.-+|+||+|+|||++|++||.|. .|+||++..+.. ...|.+|...|.+++++ +..+++|+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 45899999999999999998643 599999875421 23567899999888775 55677664
Q ss_pred ----------CCCeeEEEECCCCCceEEE---------eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCc
Q 048801 305 ----------NDFVIRVWRLPDGLPISVL---------RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS 365 (1715)
Q Consensus 305 ----------~DGtIrVWDl~tg~~l~~L---------~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l 365 (1715)
.|++|++|++..+.....+ ..+...+.+++|+|++... .+++++.|++|+|||+.+++.+
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~l-a~as~~~d~~i~iwd~~~~~~~ 170 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVA-AIASSKVPAIMRIIDPSDLTEK 170 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCE-EEEESCSSCEEEEEETTTTEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEE-EEEECCCCCEEEEeECCCCcEE
Confidence 4678999998765432211 1344568999999999832 3456678999999999988765
Q ss_pred ceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeec
Q 048801 366 PRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS 445 (1715)
Q Consensus 366 ~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~ 445 (1715)
..+. |...|.+++|+|+|++|++++.++ +.+|+..++.. .......
T Consensus 171 ~~~~--------------------------~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~-------~~~~~~~ 216 (365)
T 4h5i_A 171 FEIE--------------------------TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSC-------IARKTDF 216 (365)
T ss_dssp EEEE--------------------------CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCE-------EEEECCC
T ss_pred EEeC--------------------------CCCceEEEEEccCCceEEecccee-EEEEEeccCcc-------eeeeecC
Confidence 4432 345699999999999999998655 55666554321 2233456
Q ss_pred CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC----eEEEEecCCCccCcccccccccccc
Q 048801 446 GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG----SAIIWIPRSRRSHGKVGRWTRAYHL 521 (1715)
Q Consensus 446 gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG----sIrIWDl~t~~~~~~~~~~~~~~~l 521 (1715)
+|...|.+++|+|++ ..+++++.|+ .+++|++.......
T Consensus 217 ~~~~~v~~v~fspdg--------------------------~~l~~~s~d~~~~~~i~~~~~~~~~~~~----------- 259 (365)
T 4h5i_A 217 DKNWSLSKINFIADD--------------------------TVLIAASLKKGKGIVLTKISIKSGNTSV----------- 259 (365)
T ss_dssp CTTEEEEEEEEEETT--------------------------EEEEEEEESSSCCEEEEEEEEETTEEEE-----------
T ss_pred CCCCCEEEEEEcCCC--------------------------CEEEEEecCCcceeEEeecccccceecc-----------
Confidence 788899999999987 7888888887 67888876432100
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEE-ecCCCCeEEEEEccCCC
Q 048801 522 KVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSL-TGHSASSYVLDVHPFNP 600 (1715)
Q Consensus 522 ~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL-~gH~~~V~sLafSP~dg 600 (1715)
.....+..|...|++++|+|||++||+|+.|++|+|||+.+++++..+ .+|...|++|+|+| ++
T Consensus 260 --------------~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSp-dg 324 (365)
T 4h5i_A 260 --------------LRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISP-DS 324 (365)
T ss_dssp --------------EEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECT-TS
T ss_pred --------------eeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECC-CC
Confidence 012345667889999999999999999999999999999999999885 79999999999999 88
Q ss_pred cEEEEEeCCCcEEEEECCC
Q 048801 601 RIAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 601 ~lLaSgs~DGtI~VWDl~t 619 (1715)
++||||+.|++|+||++..
T Consensus 325 ~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 325 TYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp CEEEEEETTSEEEEEECCT
T ss_pred CEEEEEeCCCeEEEEEcCC
Confidence 9999999999999999964
No 89
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=1.7e-29 Score=311.02 Aligned_cols=287 Identities=15% Similarity=0.261 Sum_probs=237.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe--CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCC
Q 048801 287 DITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR--GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQY 364 (1715)
Q Consensus 287 ~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~--gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~ 364 (1715)
.++.|+||+++ +||+|. |++|+|||+.+|+.+..+. +|...|++|+|+|++. +|++|+.||+|+|||+.+++.
T Consensus 107 y~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~---~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 107 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN---YLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS---EEEEEETTSCEEEEETTTTEE
T ss_pred cceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCC---EEEEEECCCeEEEEEcCCCcE
Confidence 45679999764 777775 8999999999999887765 6778899999999998 899999999999999998876
Q ss_pred cceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee
Q 048801 365 SPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL 444 (1715)
Q Consensus 365 l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l 444 (1715)
+..+ ..|...+.++++ ++.+|++|+.|+.+++|+.... ...+..+
T Consensus 182 ~~~~-------------------------~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~--------~~~~~~~ 226 (420)
T 4gga_A 182 LRNM-------------------------TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVA--------EHHVATL 226 (420)
T ss_dssp EEEE-------------------------CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS--------SCEEEEE
T ss_pred EEEE-------------------------eCCCCceEEEee--CCCEEEEEeCCCceeEeeeccc--------ceeeEEe
Confidence 5443 224556777766 5779999999999999998754 2456778
Q ss_pred cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCC
Q 048801 445 SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVP 524 (1715)
Q Consensus 445 ~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~ 524 (1715)
.+|...+..+.|++++ ..+++++.||.+++|++.+++..
T Consensus 227 ~~h~~~~~~~~~~~~g--------------------------~~l~s~~~D~~v~i~~~~~~~~~--------------- 265 (420)
T 4gga_A 227 SGHSQEVCGLRWAPDG--------------------------RHLASGGNDNLVNVWPSAPGEGG--------------- 265 (420)
T ss_dssp ECCSSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEESSCCSSC---------------
T ss_pred cccccceeeeeecCCC--------------------------CeeeeeeccccceEEeecccccc---------------
Confidence 8999999999999986 79999999999999999864311
Q ss_pred CCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC-EEEE--EecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCc
Q 048801 525 PPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR-FVLA--AIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPR 601 (1715)
Q Consensus 525 ~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~-~LaT--gs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~ 601 (1715)
.........|...|.+++|+|++. ++++ |+.|++|+|||+.+++++..+..|. .+.++.|+|++..
T Consensus 266 ----------~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~-~v~~~~~~~~~~~ 334 (420)
T 4gga_A 266 ----------WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKE 334 (420)
T ss_dssp ----------SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS-CEEEEEEETTTTE
T ss_pred ----------ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc-ceeeeeecCCCCe
Confidence 112344567888999999999765 4444 3579999999999999999988664 5889999995554
Q ss_pred EEEEEe-CCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 602 IAMSAG-YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 602 lLaSgs-~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
++++++ .||.|+|||+.+++++..+.+|.+.|.+++|+|||++||+|+.||+|+||++.+....
T Consensus 335 lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp EEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred EEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence 444333 7999999999999999999999999999999999999999999999999999765433
No 90
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=4.6e-30 Score=315.43 Aligned_cols=324 Identities=14% Similarity=0.232 Sum_probs=234.9
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC-----------ceEEEeCCC------------CCeEEEEecCCCC
Q 048801 284 HEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL-----------PISVLRGHT------------GAVTAIAFSPRPS 340 (1715)
Q Consensus 284 Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~-----------~l~~L~gH~------------~~VtsLafSPdg~ 340 (1715)
|.+.|++++|+|+|.+||+|+.||.|+||++.++. .+..+.+|. ..|++++|+|++.
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 67899999999999999999999999999999877 478889998 8899999999972
Q ss_pred cceEEEEecCCCcEEEEecCCCCCcceecCCCCCC-CccCccCCCCCCCC--------------CCCCCCCCcceeEEEE
Q 048801 341 AIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPD-AITGKSNVPSNNGP--------------SSSNGLQSHQILCCAY 405 (1715)
Q Consensus 341 ~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~-~i~g~~~~~~~~~~--------------~~~~~~h~~~Vtslaf 405 (1715)
.. +|++++.||+|++||+.++............. .............+ ......|...|.+++|
T Consensus 107 ~~-~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 107 AA-QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SS-EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred cc-eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 11 79999999999999998654321111100000 00000000000000 0113468889999999
Q ss_pred ccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeee-------eecCCCCCeeEEEEccCccccccccccccccccccc
Q 048801 406 NANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD-------VLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPK 478 (1715)
Q Consensus 406 SpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~-------~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~ 478 (1715)
+|++.+|++| .||.|++||+.+.. ..+. .+.+|...|.+++|+|++
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~--------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~------------------ 238 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITD--------RSFNIVDIKPANMEELTEVITAAEFHPNS------------------ 238 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEE--------EEEEEEECCCSSGGGCCCCEEEEEECSSC------------------
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCC--------ceeeeeecccccccccCcceEEEEECCCC------------------
Confidence 9999999999 79999999997421 1222 367899999999999975
Q ss_pred ccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC
Q 048801 479 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR 558 (1715)
Q Consensus 479 ~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~ 558 (1715)
...|++|+.||.|++||++++...... ...+. ... .......+..|...|.+++|+|+|+
T Consensus 239 -------~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~--~~~--------~~~~~~~~~~~~~~v~~~~~s~~g~ 298 (447)
T 3dw8_B 239 -------CNTFVYSSSKGTIRLCDMRASALCDRH---SKLFE--EPE--------DPSNRSFFSEIISSISDVKFSHSGR 298 (447)
T ss_dssp -------TTEEEEEETTSCEEEEETTTCSSSCTT---CEEEC--CC-------------CCHHHHHTTCEEEEEECTTSS
T ss_pred -------CcEEEEEeCCCeEEEEECcCCccccce---eeEec--cCC--------CccccccccccCceEEEEEECCCCC
Confidence 369999999999999999875521100 00000 000 0000111223345899999999999
Q ss_pred EEEEEecCCeEEEEECCC-CceEEEEecCCCC---------------eEEEEEccCCCcEEEEEeCCCcEEEEECCCCce
Q 048801 559 FVLAAIMDCRICVWNAVD-GSLVHSLTGHSAS---------------SYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTP 622 (1715)
Q Consensus 559 ~LaTgs~DGtI~IWDl~s-g~~l~tL~gH~~~---------------V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~ 622 (1715)
+|++++. +.|+|||+.+ ++++..+.+|... +..++|+| ++.+|++|+.||.|+|||+.+++.
T Consensus 299 ~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~-~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 299 YMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNG-SDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp EEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECT-TSSEEEEECSTTEEEEEETTTCCE
T ss_pred EEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECC-CCCEEEEeccCCEEEEEEcCCCcc
Confidence 9999998 9999999997 8899999988642 33489999 778889999999999999999887
Q ss_pred EEEEEcc---------------------------------cceEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 623 IRIYEIG---------------------------------RFKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 623 l~tl~~h---------------------------------~~~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
+. +..+ ...|..++|+|+|.+||+++.++ +++|..
T Consensus 377 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 377 IT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp EE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ee-eeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 64 2222 34588899999999999998865 778764
No 91
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=2.6e-29 Score=293.48 Aligned_cols=283 Identities=15% Similarity=0.227 Sum_probs=232.1
Q ss_pred eEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe--CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCc
Q 048801 288 ITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR--GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS 365 (1715)
Q Consensus 288 VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~--gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l 365 (1715)
+++|+||+++ +||+| .|++|+|||+.+++++..+. +|...|++++|+|++. +|++|+.||+|++||+.+++.+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~---~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN---YLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS---EEEEEETTSEEEEEETTTTEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCC---EEEEEECCCcEEEeecCCceeE
Confidence 4679999886 77776 48999999999999888775 6778899999999998 8999999999999999988765
Q ss_pred ceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeec
Q 048801 366 PRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS 445 (1715)
Q Consensus 366 ~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~ 445 (1715)
..+. .|...+.+ +++++.++++|+.++.+++|+.... ...+..+.
T Consensus 103 ~~~~-------------------------~h~~~~~~--~~~~~~~l~s~~~~~~~~~~~~~~~--------~~~~~~~~ 147 (318)
T 4ggc_A 103 RNMT-------------------------SHSARVGS--LSWNSYILSSGSRSGHIHHHDVRVA--------EHHVATLS 147 (318)
T ss_dssp EEEE-------------------------CCSSCEEE--EEEETTEEEEEETTSEEEEEETTSS--------SCEEEEEE
T ss_pred EEec-------------------------CccceEEE--eecCCCEEEEEecCCceEeeecCCC--------ceeEEEEc
Confidence 5432 12333444 5556789999999999999998764 23567788
Q ss_pred CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCC
Q 048801 446 GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPP 525 (1715)
Q Consensus 446 gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~ 525 (1715)
+|...+..+.+.+++ ..|++++.||.|++||+.+++...
T Consensus 148 ~~~~~~~~~~~~~~~--------------------------~~l~s~~~d~~i~iwd~~~~~~~~--------------- 186 (318)
T 4ggc_A 148 GHSQEVCGLRWAPDG--------------------------RHLASGGNDNLVNVWPSAPGEGGW--------------- 186 (318)
T ss_dssp CCSSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEESSCBTTBS---------------
T ss_pred CccCceEEEEEcCCC--------------------------CEEEEEecCcceeEEECCCCcccc---------------
Confidence 999999999999986 799999999999999998754211
Q ss_pred CCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEE---EEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcE
Q 048801 526 PPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFV---LAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRI 602 (1715)
Q Consensus 526 ~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~L---aTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~l 602 (1715)
........+...|.+++++|++..+ ++++.++.|++||........... +...+..+.|+|.+..+
T Consensus 187 ----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~ 255 (318)
T 4ggc_A 187 ----------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKEL 255 (318)
T ss_dssp ----------CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEE
T ss_pred ----------cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccce
Confidence 1223345567789999999977644 356778999999998887766654 66779999999955554
Q ss_pred EEE-EeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 603 AMS-AGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 603 LaS-gs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
+++ |+.||.|+|||+.+++++..+.+|.+.|++++|+|||++||+|+.||.|+|||+.+.
T Consensus 256 ~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 256 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 443 347999999999999999999999999999999999999999999999999998664
No 92
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=1.5e-30 Score=308.48 Aligned_cols=260 Identities=22% Similarity=0.321 Sum_probs=206.0
Q ss_pred EEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--EEEEecCCCCCeEEEEECC--CCCEEEEEeCCCeeEEEE
Q 048801 238 KLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF--CLASCRGHEGDITDLAVSS--NNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 238 ~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk--~l~tL~gHs~~VtsLafSp--Dg~lLASGS~DGtIrVWD 313 (1715)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. .+..+.+|.+.|++++|++ ++.+||+|+.|++|+|||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 467999999999999999999999999999999998874 5678999999999999986 489999999999999999
Q ss_pred CCCCC--ceEEEeCCCCCeEEEEecCC--CCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCC
Q 048801 314 LPDGL--PISVLRGHTGAVTAIAFSPR--PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGP 389 (1715)
Q Consensus 314 l~tg~--~l~~L~gH~~~VtsLafSPd--g~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~ 389 (1715)
+.++. .+..+.+|...|++++|+|+ +. +|++++.||+|++||+..+......
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~---~lasgs~D~~i~lwd~~~~~~~~~~--------------------- 143 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGL---ILACGSSDGAISLLTYTGEGQWEVK--------------------- 143 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCS---CEEEECSSSCEEEEEECSSSCEEEC---------------------
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCc---EEEEEcCCCCEEEEecCCCCCccee---------------------
Confidence 98874 56678899999999999998 44 7999999999999999765311100
Q ss_pred CCCCCCCCcceeEEEEccC-----------------CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCee
Q 048801 390 SSSNGLQSHQILCCAYNAN-----------------GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVN 452 (1715)
Q Consensus 390 ~~~~~~h~~~VtslafSpd-----------------G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~ 452 (1715)
.....|...|.+++|+|+ +.+|++|+.|+.|+|||+.... ....+..+.+|...|.
T Consensus 144 -~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~------~~~~~~~l~~h~~~V~ 216 (316)
T 3bg1_A 144 -KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG------QWKEEQKLEAHSDWVR 216 (316)
T ss_dssp -CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS------CEEEEECCBCCSSCEE
T ss_pred -eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC------ccceeeecccCCCceE
Confidence 112235566888899887 4789999999999999996421 1235667889999999
Q ss_pred EEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCC
Q 048801 453 YVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQP 532 (1715)
Q Consensus 453 sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~ 532 (1715)
+++|+|++. .....|++++.||+|++|++.+....
T Consensus 217 ~v~~sp~~~----------------------~~~~~las~s~D~~v~iw~~~~~~~~----------------------- 251 (316)
T 3bg1_A 217 DVAWAPSIG----------------------LPTSTIASCSQDGRVFIWTCDDASSN----------------------- 251 (316)
T ss_dssp EEECCCCSS----------------------CSCCEEEEEETTCEEEEEECSSTTCC-----------------------
T ss_pred EEEecCCCC----------------------CCCceEEEEcCCCeEEEEEccCcccc-----------------------
Confidence 999999740 01258999999999999998752100
Q ss_pred CCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECC
Q 048801 533 PRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV 575 (1715)
Q Consensus 533 ~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~ 575 (1715)
......+..|...|.+++|+|+|.+|++|+.|++|+||+..
T Consensus 252 --~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 252 --TWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp --CCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred --chhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 00011233467789999999999999999999999999975
No 93
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=3.6e-30 Score=312.36 Aligned_cols=292 Identities=13% Similarity=0.109 Sum_probs=223.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCC-------eeEEEECCCCCc----------eEEEeCCCCCeEEEEecCCCCcceEEEE
Q 048801 285 EGDITDLAVSSNNTLVASASNDF-------VIRVWRLPDGLP----------ISVLRGHTGAVTAIAFSPRPSAIYQLLS 347 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~DG-------tIrVWDl~tg~~----------l~~L~gH~~~VtsLafSPdg~~~~~LaS 347 (1715)
..+|++++|+||+++||+|+.+. .|+||++..+.. ...|.+|...|.++++..+ .+++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~-----~~~~ 88 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKG-----IILV 88 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETT-----EEEE
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCC-----EEEE
Confidence 45899999999999999997643 599999876532 1346688889999988654 3444
Q ss_pred -----------ecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEe-
Q 048801 348 -----------SSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTG- 415 (1715)
Q Consensus 348 -----------gS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatG- 415 (1715)
++.|+.|++|++............. .......+...+.+++|+|||++|+++
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~v~fSpDg~~la~as 152 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSV----------------DFDASTNADDYTKLVYISREGTVAAIAS 152 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEE----------------CSSCCCCTTCCEEEEEECTTSSCEEEEE
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCceEEEeeee----------------ceeecCCcccCEEEEEEcCCCCEEEEEE
Confidence 4567889999886554221110000 001112234558999999999987654
Q ss_pred -cCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcC
Q 048801 416 -SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR 494 (1715)
Q Consensus 416 -s~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~ 494 (1715)
+.|++|+|||+.+++ ++..+ .|...|.+++|+|++ .+|++++.
T Consensus 153 ~~~d~~i~iwd~~~~~---------~~~~~-~~~~~V~~v~fspdg--------------------------~~l~s~s~ 196 (365)
T 4h5i_A 153 SKVPAIMRIIDPSDLT---------EKFEI-ETRGEVKDLHFSTDG--------------------------KVVAYITG 196 (365)
T ss_dssp SCSSCEEEEEETTTTE---------EEEEE-ECSSCCCEEEECTTS--------------------------SEEEEECS
T ss_pred CCCCCEEEEeECCCCc---------EEEEe-CCCCceEEEEEccCC--------------------------ceEEeccc
Confidence 478999999998743 34444 377789999999987 68888885
Q ss_pred CCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC----eEE
Q 048801 495 DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC----RIC 570 (1715)
Q Consensus 495 DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG----tI~ 570 (1715)
++ +.+|+..++.... ......|...|.+++|+|+|.++++++.|+ .|+
T Consensus 197 ~~-~~~~~~~~~~~~~---------------------------~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~ 248 (365)
T 4h5i_A 197 SS-LEVISTVTGSCIA---------------------------RKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLT 248 (365)
T ss_dssp SC-EEEEETTTCCEEE---------------------------EECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEE
T ss_pred ee-EEEEEeccCccee---------------------------eeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEe
Confidence 55 5555554432110 112345677899999999999999999887 688
Q ss_pred EEECCCCce----EEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEE-EcccceEEEEEEcCCCCEE
Q 048801 571 VWNAVDGSL----VHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY-EIGRFKLVDGKFSPDGTSI 645 (1715)
Q Consensus 571 IWDl~sg~~----l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl-~~h~~~V~svafSPDG~~L 645 (1715)
+|++..+.. ...+.+|...|++++|+| ++++||+|+.||+|+|||+.+++++..+ .+|...|++++|||||++|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~l 327 (365)
T 4h5i_A 249 KISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYV 327 (365)
T ss_dssp EEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEE
T ss_pred ecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEE
Confidence 999877653 456789999999999999 7899999999999999999999999886 6789999999999999999
Q ss_pred EEEeCCCeEEEEECCCC
Q 048801 646 VLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 646 Asgs~DG~I~IWdl~tG 662 (1715)
|+|+.|++|+||++...
T Consensus 328 aS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 328 ASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSEEEEEECCTT
T ss_pred EEEeCCCeEEEEEcCCC
Confidence 99999999999999654
No 94
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=9.7e-30 Score=311.06 Aligned_cols=290 Identities=18% Similarity=0.257 Sum_probs=237.5
Q ss_pred EecCCCCC--eEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeC-CCCCeEEEEecCCCCcceEEEEecCCCcEEE
Q 048801 280 SCRGHEGD--ITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRG-HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356 (1715)
Q Consensus 280 tL~gHs~~--VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~g-H~~~VtsLafSPdg~~~~~LaSgS~DGtVrI 356 (1715)
...+|... +.+++|++ ..+++++.||.|+||++.++.....+.. |...|++++|+|++. +|++|+.||.|++
T Consensus 86 ~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~---~l~~~~~dg~i~i 160 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGS---FLSVGLGNGLVDI 160 (401)
T ss_dssp ECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSS---EEEEEETTSCEEE
T ss_pred eCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCC---EEEEECCCCeEEE
Confidence 34456554 45566664 5578888999999999999998888775 889999999999987 8999999999999
Q ss_pred EecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCC
Q 048801 357 WDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQ 436 (1715)
Q Consensus 357 WDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~ 436 (1715)
||+.+++.+..+ ..|...|.+++| ++.+|++|+.||.|++||+...
T Consensus 161 wd~~~~~~~~~~-------------------------~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~------- 206 (401)
T 4aez_A 161 YDVESQTKLRTM-------------------------AGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIA------- 206 (401)
T ss_dssp EETTTCCEEEEE-------------------------CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS-------
T ss_pred EECcCCeEEEEe-------------------------cCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccC-------
Confidence 999887655443 135667999999 5679999999999999999743
Q ss_pred CceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccc
Q 048801 437 PIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWT 516 (1715)
Q Consensus 437 ~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~ 516 (1715)
...+..+.+|...|.+++|+|++ ..|++|+.||.|++||+.++.
T Consensus 207 -~~~~~~~~~~~~~v~~~~~~~~~--------------------------~~l~s~~~d~~v~iwd~~~~~--------- 250 (401)
T 4aez_A 207 -NHQIGTLQGHSSEVCGLAWRSDG--------------------------LQLASGGNDNVVQIWDARSSI--------- 250 (401)
T ss_dssp -SCEEEEEECCSSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEETTCSS---------
T ss_pred -cceeeEEcCCCCCeeEEEEcCCC--------------------------CEEEEEeCCCeEEEccCCCCC---------
Confidence 23467788999999999999976 799999999999999998633
Q ss_pred ccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC-EEEEEe--cCCeEEEEECCCCceEEEEecCCCCeEEE
Q 048801 517 RAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR-FVLAAI--MDCRICVWNAVDGSLVHSLTGHSASSYVL 593 (1715)
Q Consensus 517 ~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~-~LaTgs--~DGtI~IWDl~sg~~l~tL~gH~~~V~sL 593 (1715)
....+..|...|.+++|+|++. ++++|+ .|+.|++||+.+++++..+. |...|.++
T Consensus 251 --------------------~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~ 309 (401)
T 4aez_A 251 --------------------PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSL 309 (401)
T ss_dssp --------------------EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEE
T ss_pred --------------------ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEE
Confidence 2334556788999999999775 555554 69999999999999999886 66789999
Q ss_pred EEccCCCcEEEEE--eCCCcEEEEECCCCceEEE--EEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 048801 594 DVHPFNPRIAMSA--GYDGRTIVWDIWEGTPIRI--YEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 594 afSP~dg~lLaSg--s~DGtI~VWDl~tgk~l~t--l~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k 666 (1715)
+|+| ++.+++++ +.||.|+|||+.++..... +.+|...|.+++|+|+|.+|++++.||.|++|++.+++.+.
T Consensus 310 ~~s~-~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 310 IWSP-HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp EECS-SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-----
T ss_pred EECC-CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence 9999 56666663 4899999999998765554 66788999999999999999999999999999999887654
No 95
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=6.6e-30 Score=314.05 Aligned_cols=291 Identities=16% Similarity=0.227 Sum_probs=227.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-----------EEEEecCCC------------CCeEEEEECCCC
Q 048801 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF-----------CLASCRGHE------------GDITDLAVSSNN 297 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk-----------~l~tL~gHs------------~~VtsLafSpDg 297 (1715)
.|.+.|++|+|+|+|.+||+|+.||.|+||++.++. .+..+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 367899999999999999999999999999999877 588899998 889999999998
Q ss_pred --CEEEEEeCCCeeEEEECCCCCce---------------------------------------EE-EeCCCCCeEEEEe
Q 048801 298 --TLVASASNDFVIRVWRLPDGLPI---------------------------------------SV-LRGHTGAVTAIAF 335 (1715)
Q Consensus 298 --~lLASGS~DGtIrVWDl~tg~~l---------------------------------------~~-L~gH~~~VtsLaf 335 (1715)
.+|++++.|++|+||++.++... .. +.+|...|++++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 89999999999999998764331 12 3689999999999
Q ss_pred cCCCCcceEEEEecCCCcEEEEecCCCC-CcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEE
Q 048801 336 SPRPSAIYQLLSSSDDGTCRIWDARYSQ-YSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFV 413 (1715)
Q Consensus 336 SPdg~~~~~LaSgS~DGtVrIWDl~tg~-~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~La 413 (1715)
+|++. +|++| .||.|++||+.... ....+... ......|...|.+++|+|++ .+|+
T Consensus 186 ~~~~~---~l~s~-~d~~i~iwd~~~~~~~~~~~~~~------------------~~~~~~~~~~v~~~~~~p~~~~~l~ 243 (447)
T 3dw8_B 186 NSDYE---TYLSA-DDLRINLWHLEITDRSFNIVDIK------------------PANMEELTEVITAAEFHPNSCNTFV 243 (447)
T ss_dssp CTTSS---EEEEE-CSSEEEEEETTEEEEEEEEEECC------------------CSSGGGCCCCEEEEEECSSCTTEEE
T ss_pred cCCCC---EEEEe-CCCeEEEEECCCCCceeeeeecc------------------cccccccCcceEEEEECCCCCcEEE
Confidence 99987 78888 79999999998432 22221110 11233467789999999998 9999
Q ss_pred EecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC------------CeeEEEEccCcccccccccccccccccccccC
Q 048801 414 TGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN------------DVNYVQFSGCAVASRSAMSDAFKEENVPKFKN 481 (1715)
Q Consensus 414 tGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~------------~V~sLafspdg~as~~~~~~~~~~~~~~~~~~ 481 (1715)
+|+.||.|++||+.++... ...+..+.+|.. .|.+++|+|++
T Consensus 244 s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--------------------- 297 (447)
T 3dw8_B 244 YSSSKGTIRLCDMRASALC-----DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG--------------------- 297 (447)
T ss_dssp EEETTSCEEEEETTTCSSS-----CTTCEEECCC-----CCHHHHHTTCEEEEEECTTS---------------------
T ss_pred EEeCCCeEEEEECcCCccc-----cceeeEeccCCCccccccccccCceEEEEEECCCC---------------------
Confidence 9999999999999876421 112455666665 99999999986
Q ss_pred CcccCceEEEEcCCCeEEEEecCC-CccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCC--------------
Q 048801 482 SWFCHDNIVTCSRDGSAIIWIPRS-RRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPR-------------- 546 (1715)
Q Consensus 482 s~~~~~~LaSgS~DGsIrIWDl~t-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~-------------- 546 (1715)
.+|++++. |.|++||+++ +..... +..|..
T Consensus 298 -----~~l~~~~~-~~v~iwd~~~~~~~~~~-----------------------------~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 298 -----RYMMTRDY-LSVKVWDLNMENRPVET-----------------------------YQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp -----SEEEEEES-SEEEEEETTCCSSCSCC-----------------------------EESCGGGTTTHHHHHHTSGG
T ss_pred -----CEEEEeeC-CeEEEEeCCCCccccce-----------------------------eecccccccccccccccccc
Confidence 78999988 9999999985 332221 111211
Q ss_pred -CeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec---------------------------------CCCCeEE
Q 048801 547 -GVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG---------------------------------HSASSYV 592 (1715)
Q Consensus 547 -~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g---------------------------------H~~~V~s 592 (1715)
.+..++|+|++.+|++|+.||.|+|||+.+++.+. +.+ +...|.+
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 421 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILH 421 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCE
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCceeE
Confidence 13359999999999999999999999999988763 332 2456889
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 593 LDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 593 LafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
++|+| ++.+||+++.++ +++|..
T Consensus 422 ~~~~p-~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 422 TAWHP-KENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp EEECS-SSSEEEEECSSC-EEEEEC
T ss_pred EEECC-CCCEEEEEecce-eeeecc
Confidence 99999 778888887775 888864
No 96
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=5.2e-30 Score=304.34 Aligned_cols=296 Identities=17% Similarity=0.186 Sum_probs=241.8
Q ss_pred EEeCCCCcEEEEecCCCCCeEEEEECCC---CCEEEEEeCCCeeEEEECCC-CCce-EEEeCCCCCeEEEEecCCCCcce
Q 048801 269 IWSMETAFCLASCRGHEGDITDLAVSSN---NTLVASASNDFVIRVWRLPD-GLPI-SVLRGHTGAVTAIAFSPRPSAIY 343 (1715)
Q Consensus 269 IWDl~tgk~l~tL~gHs~~VtsLafSpD---g~lLASGS~DGtIrVWDl~t-g~~l-~~L~gH~~~VtsLafSPdg~~~~ 343 (1715)
.|+....+.+..+.+|.+.|++++|+|+ |.+|++|+.||.|+|||+.+ +..+ ..+.+|...|++++|+|++.
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--- 99 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS--- 99 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSS---
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCC---
Confidence 4456677788889999999999999999 69999999999999999997 5554 77889999999999999987
Q ss_pred EEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEE--ccCCCeEEEecCCCeE
Q 048801 344 QLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAY--NANGTVFVTGSSDTFA 421 (1715)
Q Consensus 344 ~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtslaf--SpdG~~LatGs~DG~I 421 (1715)
+|++++.||.|++||+.+++..... .|...|.+++| ++++.+|++|+.||.|
T Consensus 100 ~l~s~~~dg~v~iwd~~~~~~~~~~--------------------------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 153 (368)
T 3mmy_A 100 KVFTASCDKTAKMWDLSSNQAIQIA--------------------------QHDAPVKTIHWIKAPNYSCVMTGSWDKTL 153 (368)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEE--------------------------ECSSCEEEEEEEECSSCEEEEEEETTSEE
T ss_pred EEEEEcCCCcEEEEEcCCCCceeec--------------------------cccCceEEEEEEeCCCCCEEEEccCCCcE
Confidence 8999999999999999887644321 24677999999 8999999999999999
Q ss_pred EEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEE
Q 048801 422 RVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIW 501 (1715)
Q Consensus 422 rVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIW 501 (1715)
++||+.+++ .+..+..+. .+.++.+.+ ..+++++.++.+.+|
T Consensus 154 ~vwd~~~~~---------~~~~~~~~~-~~~~~~~~~----------------------------~~~~~~~~~~~i~~~ 195 (368)
T 3mmy_A 154 KFWDTRSSN---------PMMVLQLPE-RCYCADVIY----------------------------PMAVVATAERGLIVY 195 (368)
T ss_dssp EEECSSCSS---------CSEEEECSS-CEEEEEEET----------------------------TEEEEEEGGGCEEEE
T ss_pred EEEECCCCc---------EEEEEecCC-CceEEEecC----------------------------CeeEEEeCCCcEEEE
Confidence 999998753 244455444 566666654 478889999999999
Q ss_pred ecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCE----EEEEecCCeEEEEECCCC
Q 048801 502 IPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRF----VLAAIMDCRICVWNAVDG 577 (1715)
Q Consensus 502 Dl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~----LaTgs~DGtI~IWDl~sg 577 (1715)
++........ .....+...+.++++.+++.. +++++.||.|++|++...
T Consensus 196 ~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 196 QLENQPSEFR---------------------------RIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP 248 (368)
T ss_dssp ECSSSCEEEE---------------------------ECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred Eeccccchhh---------------------------hccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence 9975321100 001122334566666655544 999999999999999887
Q ss_pred ---ceEEEEecCCC------------CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCC
Q 048801 578 ---SLVHSLTGHSA------------SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDG 642 (1715)
Q Consensus 578 ---~~l~tL~gH~~------------~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG 642 (1715)
..+..+.+|.. .|++++|+| ++.+|++|+.||.|+|||+.+++++..+..|...|.+++|+|||
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g 327 (368)
T 3mmy_A 249 NPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNG 327 (368)
T ss_dssp CHHHHSEEEECSEEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTS
T ss_pred CccccceeeeeeecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCC
Confidence 66788888876 799999999 77889999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCeEEEEEC
Q 048801 643 TSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 643 ~~LAsgs~DG~I~IWdl 659 (1715)
++||+++.|+....|++
T Consensus 328 ~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 328 NIFAYASSYDWSKGHEF 344 (368)
T ss_dssp SCEEEEECCCSTTCGGG
T ss_pred CeEEEEecccccccccc
Confidence 99999999885555444
No 97
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.4e-30 Score=303.88 Aligned_cols=266 Identities=21% Similarity=0.335 Sum_probs=222.6
Q ss_pred eeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCcEEEEecCCCCCeEEEEECCC--CCEEEEEeCCCee
Q 048801 234 QNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSME--TAFCLASCRGHEGDITDLAVSSN--NTLVASASNDFVI 309 (1715)
Q Consensus 234 k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~--tgk~l~tL~gHs~~VtsLafSpD--g~lLASGS~DGtI 309 (1715)
+++..+.+|.+.|++++|+|+|++||+|+.||.|+||++. +++.+..+.+|...|++++|+++ +.+|++|+.||.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 3456789999999999999999999999999999999998 66788899999999999999987 9999999999999
Q ss_pred EEEECCCCC--ceEEEeCCCCCeEEEEecCC--CCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCC
Q 048801 310 RVWRLPDGL--PISVLRGHTGAVTAIAFSPR--PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 310 rVWDl~tg~--~l~~L~gH~~~VtsLafSPd--g~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
+|||+.++. .+..+.+|...|++++|+|+ +. +|++++.||.|++||+..+.......
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~l~~~~~d~~i~v~d~~~~~~~~~~~---------------- 142 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP---LLLVASSDGKVSVVEFKENGTTSPII---------------- 142 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS---EEEEEETTSEEEEEECCTTSCCCEEE----------------
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCC---EEEEecCCCcEEEEecCCCCceeeEE----------------
Confidence 999999987 77888899999999999999 66 89999999999999998765433221
Q ss_pred CCCCCCCCCCCCcceeEEEEcc-------------CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCee
Q 048801 386 NNGPSSSNGLQSHQILCCAYNA-------------NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVN 452 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSp-------------dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~ 452 (1715)
...|...|.+++|+| ++.+|++|+.||.|++||+.++.. .......+.+|...|.
T Consensus 143 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~h~~~v~ 210 (379)
T 3jrp_A 143 -------IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-----TYVLESTLEGHSDWVR 210 (379)
T ss_dssp -------EECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT-----EEEEEEEECCCSSCEE
T ss_pred -------ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc-----ceeeEEEEecccCcEe
Confidence 123566799999999 699999999999999999976431 2335567889999999
Q ss_pred EEEEccC---cccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCC
Q 048801 453 YVQFSGC---AVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLP 529 (1715)
Q Consensus 453 sLafspd---g~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~ 529 (1715)
+++|+|+ + .+|++++.||.|++||+.++.....
T Consensus 211 ~~~~sp~~~~~--------------------------~~l~s~~~dg~i~iwd~~~~~~~~~------------------ 246 (379)
T 3jrp_A 211 DVAWSPTVLLR--------------------------SYLASVSQDRTCIIWTQDNEQGPWK------------------ 246 (379)
T ss_dssp EEEECCCCSSS--------------------------EEEEEEETTSCEEEEEESSTTSCCE------------------
T ss_pred EEEECCCCCCC--------------------------CeEEEEeCCCEEEEEeCCCCCccce------------------
Confidence 9999998 5 7999999999999999986431100
Q ss_pred CCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceE
Q 048801 530 PQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLV 580 (1715)
Q Consensus 530 ~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l 580 (1715)
........+...|.+++|+|+|++|++++.||.|+||++..+...
T Consensus 247 ------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 247 ------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp ------EEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred ------eeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence 011122346778999999999999999999999999999765433
No 98
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-30 Score=329.30 Aligned_cols=293 Identities=11% Similarity=0.066 Sum_probs=221.3
Q ss_pred EEEEcCCCCCeEEEEEcCC------CCEEEEEeCCCcEEEEeCCCCcE-----------EEEecCCCCCeEEEEECCCCC
Q 048801 236 IKKLRGHRDAVYCAIFDRS------GRFVITGSDDRLVKIWSMETAFC-----------LASCRGHEGDITDLAVSSNNT 298 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpD------G~~LaTGS~DGtIrIWDl~tgk~-----------l~tL~gHs~~VtsLafSpDg~ 298 (1715)
..++.+|.+.|++|+|+|+ +.+||+|+.||+|+|||+.++.. ..++.+|...|++++|++++
T Consensus 200 ~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~- 278 (524)
T 2j04_B 200 VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT- 278 (524)
T ss_dssp EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-
T ss_pred EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-
Confidence 3567889999999999997 57999999999999999987642 34788999999999999864
Q ss_pred EEEEEeCCCeeEEEECCCC-CceEEEeCCCCCeEEE--EecCCC-CcceEEEEecCCCcEEEEecCCCCCcceecCCCCC
Q 048801 299 LVASASNDFVIRVWRLPDG-LPISVLRGHTGAVTAI--AFSPRP-SAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPP 374 (1715)
Q Consensus 299 lLASGS~DGtIrVWDl~tg-~~l~~L~gH~~~VtsL--afSPdg-~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~ 374 (1715)
.||+|+.||+|+|||+.++ .+...+.+|...|++| +|+|++ . +|++++.|++|+|||+++++....+..
T Consensus 279 ~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~---~laS~S~D~tvklWD~~~~~~~~~~~~---- 351 (524)
T 2j04_B 279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDT---VVSTVAVDGYFYIFNPKDIATTKTTVS---- 351 (524)
T ss_dssp EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCC---EEEEEETTSEEEEECGGGHHHHCEEEE----
T ss_pred eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCe---EEEEeccCCeEEEEECCCCCccccccc----
Confidence 8999999999999999977 4566789999999999 577876 5 899999999999999987765433210
Q ss_pred CCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEE
Q 048801 375 DAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYV 454 (1715)
Q Consensus 375 ~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sL 454 (1715)
+ .....|.+++|+|++..|++++.|++|++||++++. ++..+.+|.+.|++|
T Consensus 352 -----~--------------~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~---------~~~~l~gH~~~V~sv 403 (524)
T 2j04_B 352 -----R--------------FRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF---------AVHPLVSRETTITAI 403 (524)
T ss_dssp -----E--------------CSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT---------CCEEEEECSSCEEEE
T ss_pred -----c--------------cccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc---------cceeeecCCCceEEE
Confidence 0 001237899999999999999999999999998743 345677899999999
Q ss_pred EEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCC
Q 048801 455 QFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534 (1715)
Q Consensus 455 afspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 534 (1715)
+|+|++ ..|++|+.||+|++||+..+.....
T Consensus 404 a~Sp~g--------------------------~~l~Sgs~Dgtv~lwd~~~~~~~~~----------------------- 434 (524)
T 2j04_B 404 GVSRLH--------------------------PMVLAGSADGSLIITNAARRLLHGI----------------------- 434 (524)
T ss_dssp ECCSSC--------------------------CBCEEEETTTEEECCBSCSSTTTCC-----------------------
T ss_pred EeCCCC--------------------------CeEEEEECCCEEEEEechHhhcccc-----------------------
Confidence 999986 7899999999999999764210000
Q ss_pred CCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECC-CCceEEEEecCCCCeEEEEEccCC--CcEEEEEeCCCc
Q 048801 535 GGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV-DGSLVHSLTGHSASSYVLDVHPFN--PRIAMSAGYDGR 611 (1715)
Q Consensus 535 g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~-sg~~l~tL~gH~~~V~sLafSP~d--g~lLaSgs~DGt 611 (1715)
.......+...|..++|+|+|..+. ... .+.+|... ++.++..+.+|...|++|+|+|++ +.++|+|+.||.
T Consensus 435 --~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~ 509 (524)
T 2j04_B 435 --KNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGL 509 (524)
T ss_dssp --------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSE
T ss_pred --ccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCce
Confidence 0000001123467899999998553 222 33344432 577888999999999999999954 469999999999
Q ss_pred EEEEECC
Q 048801 612 TIVWDIW 618 (1715)
Q Consensus 612 I~VWDl~ 618 (1715)
|+||++.
T Consensus 510 vrlw~l~ 516 (524)
T 2j04_B 510 LTLEYLS 516 (524)
T ss_dssp EEEEECS
T ss_pred EEEEEcc
Confidence 9999984
No 99
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=3.1e-29 Score=296.35 Aligned_cols=293 Identities=10% Similarity=0.037 Sum_probs=238.4
Q ss_pred EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC---ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcE
Q 048801 278 LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL---PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354 (1715)
Q Consensus 278 l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~---~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtV 354 (1715)
+....+|.+.|++++|+|++.+|++|+.||.|+||++.++. ....+.+|...|++++|+|++.. +|++++.||.|
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg~i 81 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL--QIYVGTVQGEI 81 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE--EEEEEETTSCE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc--EEEEEcCCCeE
Confidence 33456899999999999999999999999999999998887 35556689999999999998641 58999999999
Q ss_pred EEEec-CCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCC--CCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCc
Q 048801 355 RIWDA-RYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL--QSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSV 431 (1715)
Q Consensus 355 rIWDl-~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~--h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~ 431 (1715)
++||+ .++.. .. ... |...|.+++|+| +.+|++++.|+.|++||+.+...
T Consensus 82 ~~wd~~~~~~~-~~-------------------------~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~ 134 (342)
T 1yfq_A 82 LKVDLIGSPSF-QA-------------------------LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGD 134 (342)
T ss_dssp EEECSSSSSSE-EE-------------------------CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTT
T ss_pred EEEEeccCCce-Ee-------------------------ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccc
Confidence 99999 76643 11 122 567899999999 99999999999999999875100
Q ss_pred cCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCC-CccCc
Q 048801 432 EDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS-RRSHG 510 (1715)
Q Consensus 432 ~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t-~~~~~ 510 (1715)
.........+..+. |...|.+++|+++ .+++++.||.|++||+.+ ....
T Consensus 135 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~----------------------------~l~~~~~d~~i~i~d~~~~~~~~- 184 (342)
T 1yfq_A 135 GVIAVKNLNSNNTK-VKNKIFTMDTNSS----------------------------RLIVGMNNSQVQWFRLPLCEDDN- 184 (342)
T ss_dssp BCEEEEESCSSSSS-SCCCEEEEEECSS----------------------------EEEEEESTTEEEEEESSCCTTCC-
T ss_pred ccccccCCeeeEEe-eCCceEEEEecCC----------------------------cEEEEeCCCeEEEEECCcccccc-
Confidence 00000011233334 8889999999874 499999999999999985 3210
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CCCEEEEEecCCeEEEEECCCC------ceEEEE
Q 048801 511 KVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAVDG------SLVHSL 583 (1715)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~LaTgs~DGtI~IWDl~sg------~~l~tL 583 (1715)
.......+...|.+++|+| ++.+|++++.||.|+||++... +.+..+
T Consensus 185 --------------------------~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 238 (342)
T 1yfq_A 185 --------------------------GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp --------------------------CEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred --------------------------ceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceee
Confidence 1122345677899999999 9999999999999999999887 888899
Q ss_pred ecCCC---------CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcc-cceEEEEEEcCCCCEEEEEeCCCe
Q 048801 584 TGHSA---------SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIG-RFKLVDGKFSPDGTSIVLSDDVGQ 653 (1715)
Q Consensus 584 ~gH~~---------~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h-~~~V~svafSPDG~~LAsgs~DG~ 653 (1715)
.+|.. .|.+++|+| ++.+|++|+.||.|+|||+.+++++..+..| ...|.+++ |+|.+|++++.||.
T Consensus 239 ~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 239 RCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred ecccccccccccceeEEEEEEcC-CCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 88865 999999999 7788899999999999999999999999988 88999999 99999999999997
Q ss_pred -EEEEE
Q 048801 654 -IYLLN 658 (1715)
Q Consensus 654 -I~IWd 658 (1715)
...|.
T Consensus 316 ~~~~~~ 321 (342)
T 1yfq_A 316 FKTNAA 321 (342)
T ss_dssp HHHCSS
T ss_pred cccccc
Confidence 44443
No 100
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.5e-29 Score=296.19 Aligned_cols=317 Identities=14% Similarity=0.140 Sum_probs=225.2
Q ss_pred EEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC----CceEEEeCCCCCeEEEEecC--CCCcceEEEEecCCC
Q 048801 279 ASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG----LPISVLRGHTGAVTAIAFSP--RPSAIYQLLSSSDDG 352 (1715)
Q Consensus 279 ~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg----~~l~~L~gH~~~VtsLafSP--dg~~~~~LaSgS~DG 352 (1715)
..+.+|.+.|++++|+|++.+||+|+.||.|+|||+.++ ..+..+.+|...|++++|+| ++. +|++++.||
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~---~l~s~~~dg 81 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR---IIASASYDK 81 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS---EEEEEETTS
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC---EEEEEcCCC
Confidence 356899999999999999999999999999999999876 45677789999999999999 465 899999999
Q ss_pred cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC--CCeEEEecCCCeEEEEeCCCCC
Q 048801 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN--GTVFVTGSSDTFARVWSACKSS 430 (1715)
Q Consensus 353 tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd--G~~LatGs~DG~IrVWDl~t~~ 430 (1715)
.|++||+.++....... ..........|...|.+++|+|+ +.+|++|+.||.|++||+.+++
T Consensus 82 ~v~vwd~~~~~~~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 82 TVKLWEEDPDQEECSGR----------------RWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS 145 (351)
T ss_dssp CEEEEEECTTSCTTSSC----------------SEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT
T ss_pred eEEEEecCCCccccccc----------------CcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH
Confidence 99999998765321000 00001112346778999999999 9999999999999999998765
Q ss_pred ccCCCCCceeee----eecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCC
Q 048801 431 VEDSEQPIHELD----VLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 506 (1715)
Q Consensus 431 ~~~~~~~~~~l~----~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~ 506 (1715)
............ ....|...+.+++|+|+. +....|++++.|+.+.+|+...+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-----------------------~~~~~l~~~~~~~~~~~~~~~~~ 202 (351)
T 3f3f_A 146 DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSR-----------------------FSPEKLAVSALEQAIIYQRGKDG 202 (351)
T ss_dssp CTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCS-----------------------SSCCEEEEEETTEEEEEEECTTS
T ss_pred HhccccccccccccccccCCcccceeEEEeccCC-----------------------CCCcEEEEecCCCcEEEEccCCC
Confidence 422211111111 123678899999999862 12379999999999988876643
Q ss_pred ccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC----CEEEEEecCCeEEEEECCCCceEEE
Q 048801 507 RSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN----RFVLAAIMDCRICVWNAVDGSLVHS 582 (1715)
Q Consensus 507 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG----~~LaTgs~DGtI~IWDl~sg~~l~t 582 (1715)
.. .....+.+|...|++++|+|++ .+|++|+.||.|++||+.++.....
T Consensus 203 ~~---------------------------~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 255 (351)
T 3f3f_A 203 KL---------------------------HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLA 255 (351)
T ss_dssp CE---------------------------EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----
T ss_pred ce---------------------------eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccc
Confidence 21 1133455688899999999998 8999999999999999988766555
Q ss_pred EecCCCCeEEEEEccCCCcEEEEE----eCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 583 LTGHSASSYVLDVHPFNPRIAMSA----GYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 583 L~gH~~~V~sLafSP~dg~lLaSg----s~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
...+...+....+++ ....++.+ .....+.+|+...++++..+.+|...|.+++|+|+|++|++++.||.|+||+
T Consensus 256 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 256 SEESLTNSNMFDNSA-DVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 334 (351)
T ss_dssp ------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred cCCcccceeccCCCc-ccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 544444444444433 22233332 3445667777777888999999999999999999999999999999999999
Q ss_pred CCCCccc
Q 048801 659 TGQGESQ 665 (1715)
Q Consensus 659 l~tGe~~ 665 (1715)
+.+++..
T Consensus 335 ~~~~~~~ 341 (351)
T 3f3f_A 335 ATYSNEF 341 (351)
T ss_dssp ECTTSCE
T ss_pred cCcCcch
Confidence 9887543
No 101
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=3.3e-29 Score=309.72 Aligned_cols=281 Identities=23% Similarity=0.370 Sum_probs=238.4
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecC
Q 048801 281 CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360 (1715)
Q Consensus 281 L~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~ 360 (1715)
..+|...|++++| ++.+|++|+.||.|+|||+.+++.+..+.+|.+.|++++| ++. +|++|+.||+|++||+.
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~---~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DER---VIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSS---EEEEEETTSCEEEEESS
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCC---EEEEEcCCCeEEEEECC
Confidence 3457788998887 7899999999999999999999999999999999999999 444 89999999999999999
Q ss_pred CCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCcee
Q 048801 361 YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHE 440 (1715)
Q Consensus 361 tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~ 440 (1715)
+++.+..+ ..|...|.+++|+ +.+|++|+.||.|++||+.++.. ...
T Consensus 202 ~~~~~~~~-------------------------~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~------~~~ 248 (435)
T 1p22_A 202 TGEMLNTL-------------------------IHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTD------ITL 248 (435)
T ss_dssp SCCEEEEE-------------------------CCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSC------CEE
T ss_pred CCcEEEEE-------------------------cCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCC------cee
Confidence 88755443 1346679999997 45999999999999999986532 233
Q ss_pred eeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccccccc
Q 048801 441 LDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYH 520 (1715)
Q Consensus 441 l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~ 520 (1715)
...+.+|...|.+++|.+ ..|++|+.||.|++||+.+++
T Consensus 249 ~~~~~~~~~~v~~~~~~~----------------------------~~l~s~~~dg~i~vwd~~~~~------------- 287 (435)
T 1p22_A 249 RRVLVGHRAAVNVVDFDD----------------------------KYIVSASGDRTIKVWNTSTCE------------- 287 (435)
T ss_dssp EEEECCCSSCEEEEEEET----------------------------TEEEEEETTSEEEEEETTTCC-------------
T ss_pred eeEecCCCCcEEEEEeCC----------------------------CEEEEEeCCCeEEEEECCcCc-------------
Confidence 467889999999999943 689999999999999998643
Q ss_pred ccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCC
Q 048801 521 LKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNP 600 (1715)
Q Consensus 521 l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg 600 (1715)
....+..|...|.+++| ++.+|++|+.||.|++||+.+++++..+.+|...|.+++| ++
T Consensus 288 ----------------~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~---~~ 346 (435)
T 1p22_A 288 ----------------FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DN 346 (435)
T ss_dssp ----------------EEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC---CS
T ss_pred ----------------EEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe---cC
Confidence 23345567888999998 5789999999999999999999999999999999999998 56
Q ss_pred cEEEEEeCCCcEEEEECCCCc---------eEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 601 RIAMSAGYDGRTIVWDIWEGT---------PIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 601 ~lLaSgs~DGtI~VWDl~tgk---------~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
.+|++|+.||.|+|||+.++. ++..+.+|...|.+++| ++.+|++++.||.|+|||+.++...
T Consensus 347 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 347 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-------
T ss_pred CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCc
Confidence 789999999999999997766 88999999999999999 8899999999999999999876543
No 102
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=6.3e-28 Score=291.79 Aligned_cols=331 Identities=10% Similarity=0.053 Sum_probs=259.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEE-EEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEE
Q 048801 256 RFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLV-ASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIA 334 (1715)
Q Consensus 256 ~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lL-ASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLa 334 (1715)
.++++++.|+.|++||+.+++++..+.+|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 467889999999999999999999998775 48999999999977 677789999999999999998888655 899999
Q ss_pred ecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeE-E
Q 048801 335 FSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVF-V 413 (1715)
Q Consensus 335 fSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~L-a 413 (1715)
|+|++.. ++++++.++.|++||+.+++.+..+.. ...+.+++|+|+|+.| +
T Consensus 81 ~spdg~~--l~~~~~~~~~v~v~d~~~~~~~~~~~~--------------------------~~~~~~~~~s~dg~~l~~ 132 (391)
T 1l0q_A 81 VSPDGKQ--VYVTNMASSTLSVIDTTSNTVAGTVKT--------------------------GKSPLGLALSPDGKKLYV 132 (391)
T ss_dssp ECTTSSE--EEEEETTTTEEEEEETTTTEEEEEEEC--------------------------SSSEEEEEECTTSSEEEE
T ss_pred ECCCCCE--EEEEECCCCEEEEEECCCCeEEEEEeC--------------------------CCCcceEEECCCCCEEEE
Confidence 9999872 345666789999999998876544321 2347899999999977 7
Q ss_pred EecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEc
Q 048801 414 TGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS 493 (1715)
Q Consensus 414 tGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS 493 (1715)
+++.++.|++||+.+++ .+..+..+ ..+.+++|+|++ ...+++++
T Consensus 133 ~~~~~~~v~~~d~~~~~---------~~~~~~~~-~~~~~~~~~~dg-------------------------~~l~~~~~ 177 (391)
T 1l0q_A 133 TNNGDKTVSVINTVTKA---------VINTVSVG-RSPKGIAVTPDG-------------------------TKVYVANF 177 (391)
T ss_dssp EETTTTEEEEEETTTTE---------EEEEEECC-SSEEEEEECTTS-------------------------SEEEEEET
T ss_pred EeCCCCEEEEEECCCCc---------EEEEEecC-CCcceEEECCCC-------------------------CEEEEEeC
Confidence 88889999999998643 34444444 457899999986 23447888
Q ss_pred CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe---cCCeEE
Q 048801 494 RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI---MDCRIC 570 (1715)
Q Consensus 494 ~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs---~DGtI~ 570 (1715)
.++.|++||+.+++.. ....+...+.+++|+|+|++|++++ .++.|+
T Consensus 178 ~~~~v~~~d~~~~~~~------------------------------~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~ 227 (391)
T 1l0q_A 178 DSMSISVIDTVTNSVI------------------------------DTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVS 227 (391)
T ss_dssp TTTEEEEEETTTTEEE------------------------------EEEECSSEEEEEEECTTSSEEEEEEECSSCCEEE
T ss_pred CCCEEEEEECCCCeEE------------------------------EEEecCCCccceEECCCCCEEEEEecCcCCCcEE
Confidence 9999999999864321 1122345688999999999999888 689999
Q ss_pred EEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEE---EEEEcC-------
Q 048801 571 VWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLV---DGKFSP------- 640 (1715)
Q Consensus 571 IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~---svafSP------- 640 (1715)
+||+.+++.+..+..|.. +.+++|+|++..++++++.|+.|++||+.+++.+..+..+..+.. .+.+.|
T Consensus 228 ~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (391)
T 1l0q_A 228 MIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPS 306 (391)
T ss_dssp EEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCB
T ss_pred EEECCCCeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccc
Confidence 999999999999887754 789999995555668889999999999999999999887655432 123332
Q ss_pred -----CC----------CEEEEEeCCCeEEEEECCCCccccccccceeecCCCccEE
Q 048801 641 -----DG----------TSIVLSDDVGQIYLLNTGQGESQKDAKYDQFFLGDYRPLI 682 (1715)
Q Consensus 641 -----DG----------~~LAsgs~DG~I~IWdl~tGe~~k~~~~~~~fs~D~r~L~ 682 (1715)
+. ..+...+.+..+++|++++|...........|+++|...+
T Consensus 307 a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~~~~~~~~~~~~g~y~~ 363 (391)
T 1l0q_A 307 ADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSKKQNPTHTYSETGIYTV 363 (391)
T ss_dssp CCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEECSSSCEECCSSCEEEEE
T ss_pred cccccccccccccccceEEEEeCCCCceEEEEECCCCcccCcCCCeEEeCCCceEEE
Confidence 21 2344556788999999999876554445567888877654
No 103
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=1.6e-29 Score=299.81 Aligned_cols=271 Identities=18% Similarity=0.267 Sum_probs=205.5
Q ss_pred EecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC--ceEEEeCCCCCeEEEEecCC--CCcceEEEEecCCCcEE
Q 048801 280 SCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL--PISVLRGHTGAVTAIAFSPR--PSAIYQLLSSSDDGTCR 355 (1715)
Q Consensus 280 tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~--~l~~L~gH~~~VtsLafSPd--g~~~~~LaSgS~DGtVr 355 (1715)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. .+..+.+|.+.|++++|++. +. +|++++.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~---~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGN---ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSS---CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCC---EEEEEECCCEEE
Confidence 457899999999999999999999999999999998874 46788999999999999863 54 799999999999
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC--CCeEEEecCCCeEEEEeCCCCCccC
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN--GTVFVTGSSDTFARVWSACKSSVED 433 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd--G~~LatGs~DG~IrVWDl~t~~~~~ 433 (1715)
+||+.++....... ...|...|.+++|+|+ |.+|++|+.||.|++|++....
T Consensus 85 iWd~~~~~~~~~~~-----------------------~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~--- 138 (316)
T 3bg1_A 85 IWREENGTWEKSHE-----------------------HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG--- 138 (316)
T ss_dssp EECCSSSCCCEEEE-----------------------ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS---
T ss_pred EEECCCCcceEEEE-----------------------ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC---
Confidence 99998764322111 1235677999999998 8899999999999999997532
Q ss_pred CCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccc
Q 048801 434 SEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVG 513 (1715)
Q Consensus 434 ~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~ 513 (1715)
.......+.+|...|.+++|+|+...... ... + .........+|++|+.|++|++||+.....
T Consensus 139 ---~~~~~~~~~~h~~~v~~~~~~~~~~~~~~--~~~------~-~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~----- 201 (316)
T 3bg1_A 139 ---QWEVKKINNAHTIGCNAVSWAPAVVPGSL--IDH------P-SGQKPNYIKRFASGGCDNLIKLWKEEEDGQ----- 201 (316)
T ss_dssp ---CEEECCBTTSSSSCBCCCEECCCCCC--------------C-CSCCCCCCCBEECCBTTSBCCEEEECTTSC-----
T ss_pred ---CcceeeeeccccCCcceEEEccccCCccc--ccc------c-cccCccccceEEEecCCCeEEEEEeCCCCc-----
Confidence 12224566789999999999997421000 000 0 000001135899999999999999864210
Q ss_pred cccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC----CEEEEEecCCeEEEEECCCC---c-eEEEEec
Q 048801 514 RWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN----RFVLAAIMDCRICVWNAVDG---S-LVHSLTG 585 (1715)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG----~~LaTgs~DGtI~IWDl~sg---~-~l~tL~g 585 (1715)
+ .....+.+|...|.+++|+|++ .+|++|+.|++|+||++.++ . ....+.+
T Consensus 202 -~--------------------~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~ 260 (316)
T 3bg1_A 202 -W--------------------KEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHK 260 (316)
T ss_dssp -E--------------------EEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEE
T ss_pred -c--------------------ceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhc
Confidence 0 1123456788999999999987 89999999999999999763 1 2345677
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 586 HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 586 H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
|...|++++|+| ++.+|++|+.||+|+||+..
T Consensus 261 ~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 261 FNDVVWHVSWSI-TANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CSSCEEEEEECT-TTCCEEEEESSSCEEEEEEC
T ss_pred CCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEEC
Confidence 899999999999 77889999999999999975
No 104
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.2e-29 Score=297.43 Aligned_cols=277 Identities=17% Similarity=0.216 Sum_probs=216.2
Q ss_pred CcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC--CCCceEEEeCCCCCeEEEEecCC--CCcceEEEEecC
Q 048801 275 AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP--DGLPISVLRGHTGAVTAIAFSPR--PSAIYQLLSSSD 350 (1715)
Q Consensus 275 gk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~--tg~~l~~L~gH~~~VtsLafSPd--g~~~~~LaSgS~ 350 (1715)
|+++..+.+|.+.|++++|+|++++||+|+.||.|+||++. ++..+..+.+|...|++++|+++ +. +|++++.
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~---~l~s~~~ 77 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT---ILASCSY 77 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS---EEEEEET
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCC---EEEEecc
Confidence 45677889999999999999999999999999999999998 56778889999999999999977 55 8999999
Q ss_pred CCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC--CCeEEEecCCCeEEEEeCCC
Q 048801 351 DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN--GTVFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 351 DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd--G~~LatGs~DG~IrVWDl~t 428 (1715)
||.|++||+.+++...... ...|...|.+++|+|+ +.+|++++.||.|++||+..
T Consensus 78 dg~v~iwd~~~~~~~~~~~-----------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 134 (379)
T 3jrp_A 78 DGKVLIWKEENGRWSQIAV-----------------------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE 134 (379)
T ss_dssp TSCEEEEEEETTEEEEEEE-----------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCT
T ss_pred CCEEEEEEcCCCceeEeee-----------------------ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCC
Confidence 9999999998875222111 1234667999999999 99999999999999999986
Q ss_pred CCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCcc
Q 048801 429 SSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS 508 (1715)
Q Consensus 429 ~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~ 508 (1715)
... .....+.+|...|.+++|+|........ .........|++++.||.|++||++++..
T Consensus 135 ~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 194 (379)
T 3jrp_A 135 NGT-------TSPIIIDAHAIGVNSASWAPATIEEDGE-------------HNGTKESRKFVTGGADNLVKIWKYNSDAQ 194 (379)
T ss_dssp TSC-------CCEEEEECCTTCEEEEEECCCC-----------------------CTTCEEEEEETTSCEEEEEEETTTT
T ss_pred CCc-------eeeEEecCCCCceEEEEEcCcccccccc-------------ccCCCCCCEEEEEeCCCeEEEEEecCCCc
Confidence 531 2234567899999999999942100000 00001137899999999999999976331
Q ss_pred CcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC---CCEEEEEecCCeEEEEECCCCc---eEEE
Q 048801 509 HGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD---NRFVLAAIMDCRICVWNAVDGS---LVHS 582 (1715)
Q Consensus 509 ~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD---G~~LaTgs~DGtI~IWDl~sg~---~l~t 582 (1715)
.. .....+..|...|.+++|+|+ +.+|++++.||.|+|||+.++. ....
T Consensus 195 ~~-------------------------~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 249 (379)
T 3jrp_A 195 TY-------------------------VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTL 249 (379)
T ss_dssp EE-------------------------EEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEE
T ss_pred ce-------------------------eeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeee
Confidence 10 122345678889999999999 8999999999999999998874 2222
Q ss_pred E--ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceE
Q 048801 583 L--TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPI 623 (1715)
Q Consensus 583 L--~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l 623 (1715)
+ ..|...|++++|+| ++.+|++++.||.|+||++..+...
T Consensus 250 ~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 250 LKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp SSSSCCSSCEEEEEECS-SSCCEEEEESSSSEEEEEEEETTEE
T ss_pred eccccCCCcEEEEEEcC-CCCEEEEecCCCcEEEEeCCCCCcc
Confidence 2 34889999999999 7778889999999999999765433
No 105
>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A
Probab=99.96 E-value=7.6e-32 Score=320.65 Aligned_cols=131 Identities=15% Similarity=0.171 Sum_probs=122.5
Q ss_pred cCcccCCchhhHHHHhhhhhhhhhcccccccccchhHHHHHHHHhhccCch----------------------hhHHHHH
Q 048801 15 LGKAPLKFSSTVQEMAQLEQQDMVANQVVEADVDLREVYFLIIHFLSSGPC----------------------QRTLGLL 72 (1715)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~i~ElyfLi~~fL~~gp~----------------------~~~~~~L 72 (1715)
|+..-=-|.|+..+|.+|+. +++||+|+|||||++|+.|+|.+.+ .+.|+.+
T Consensus 258 fD~~dR~F~Si~~~w~~~~~------~~~d~kElIPEFf~~Pe~l~N~n~~~lG~~~~g~~v~DV~LP~Wa~sp~~FI~~ 331 (414)
T 1t77_A 258 FDHADRTFSSISRAWRNSQR------DTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHI 331 (414)
T ss_dssp CCCTTTSCCBHHHHHHHHHH------CTTCCCCBCGGGGTCGGGGSCTTCCCCCBCTTSCBCSSCBCCTTCSSHHHHHHH
T ss_pred cCCCccchhhHHHHHHHHhc------cCCCccccCchhhcChHhhccccCCccccccCCCCCCceeCCCCCCCHHHHHHH
Confidence 44444459999999999998 8899999999999999999987642 3799999
Q ss_pred HHHHHhcCCCccccccc----cccCCCCCCCCCCCCCccccCcccccccCCCCChHHHHHHHHHHHhcCCCCCCCccCCC
Q 048801 73 WNELLEHQLLPRRYHAW----FSRSGVNSGNDNDDGISFPLSYNKLVERYPHIEWDHLVKLLRQLLLYKASPFHGRIGGI 148 (1715)
Q Consensus 73 ~ReALESeyVS~~LH~W----FGyKQrG~eAv~A~NVFh~LTYEG~Vdld~i~dp~~r~aie~QI~nFGQTP~QL~~~pH 148 (1715)
||+||||+|||+|||+| |||||+|++|++|.||||||||||.||+++|.||.+|.++++||.+|||||.|||.+||
T Consensus 332 ~R~aLES~~VS~~Lh~WIDLiFGykq~G~~Av~a~Nvf~~ltY~~~vd~~~i~d~~~~~a~~~~i~~fGQ~P~QLF~~pH 411 (414)
T 1t77_A 332 NRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPH 411 (414)
T ss_dssp HHHHHHSHHHHTTHHHHHHHHTSTTSSHHHHHHHTCCBCGGGSTTSCCGGGCCSHHHHHHHHHHHHHHCCCCCCCCSSCC
T ss_pred HHHHHcChHhhhhhhhhhhhhcCcccCCHHHHhcCCccccceecCcccccccCCHHHHHHHHHHHHHcCCChhhhhcCCC
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 048801 149 APN 151 (1715)
Q Consensus 149 PPr 151 (1715)
|+|
T Consensus 412 P~R 414 (414)
T 1t77_A 412 PPR 414 (414)
T ss_dssp CCC
T ss_pred CCC
Confidence 986
No 106
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8e-30 Score=319.54 Aligned_cols=324 Identities=11% Similarity=0.017 Sum_probs=246.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCce
Q 048801 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPI 320 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l 320 (1715)
.-...|.+|+|+|||+++||++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+. +..
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~---~~~ 77 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELA---QQN 77 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCC---CSS
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeC---CCc
Confidence 3457899999999999999999999999 755554 448999999999999999 4555555554 322
Q ss_pred EEEe-CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcc
Q 048801 321 SVLR-GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ 399 (1715)
Q Consensus 321 ~~L~-gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~ 399 (1715)
..+. .|...|++++|+|+|. +|++++.||+|++||... ++..+. .. .......
T Consensus 78 ~~~~~~~~~~V~~vawSPdG~---~LAs~s~dg~V~iwd~~~--~l~~l~---~~------------------~~~~~~s 131 (588)
T 2j04_A 78 GLLNSQPVCYPRVCKPSPIDD---WMAVLSNNGNVSVFKDNK--MLTNLD---SK------------------GNLSSRT 131 (588)
T ss_dssp CSSTTSCSCCEEEEEECSSSS---CEEEEETTSCEEEEETTE--EEEECC---CS------------------SCSTTTC
T ss_pred eEeecCCCCcEEEEEECCCCC---EEEEEeCCCcEEEEeCCc--eeeecc---CC------------------Ccccccc
Confidence 2333 5688999999999998 899999999999999543 111110 00 0001235
Q ss_pred eeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee----cCCCCCeeEEEEccCcccccccccccccccc
Q 048801 400 ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL----SGHENDVNYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 400 VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l----~gH~~~V~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
|.+++|||+|++||+|+.||+|+||++.++.+.. ...-.+..+ .+|...|.+++|+|+
T Consensus 132 v~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~--~~~i~l~ti~~~~~gh~~~V~sVawSPd---------------- 193 (588)
T 2j04_A 132 YHCFEWNPIESSIVVGNEDGELQFFSIRKNSENT--PEFYFESSIRLSDAGSKDWVTHIVWYED---------------- 193 (588)
T ss_dssp EEEEEECSSSSCEEEEETTSEEEEEECCCCTTTC--CCCEEEEEEECSCTTCCCCEEEEEEETT----------------
T ss_pred EEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccc--ccceeeeeeecccccccccEEEEEEcCC----------------
Confidence 8999999999999999999999999998753100 000124454 678899999999995
Q ss_pred cccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccc-cCCCCCeeEEEeC
Q 048801 476 VPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRL-LPTPRGVNMIVWS 554 (1715)
Q Consensus 476 ~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l-~~h~~~VtslafS 554 (1715)
. +++++.|++|++|++.++... .....+ .+|...|.+++|+
T Consensus 194 -----------g-Laass~D~tVrlWd~~~~~~~--------------------------~~~~tL~~~h~~~V~svaFs 235 (588)
T 2j04_A 194 -----------V-LVAALSNNSVFSMTVSASSHQ--------------------------PVSRMIQNASRRKITDLKIV 235 (588)
T ss_dssp -----------E-EEEEETTCCEEEECCCSSSSC--------------------------CCEEEEECCCSSCCCCEEEE
T ss_pred -----------c-EEEEeCCCeEEEEECCCCccc--------------------------cceeeecccccCcEEEEEEE
Confidence 4 889999999999998763310 001123 2567789999999
Q ss_pred CCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEE--ccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccce
Q 048801 555 LDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDV--HPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFK 632 (1715)
Q Consensus 555 PDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLaf--SP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~ 632 (1715)
|..||+++ +++|++||+.+++......+|.+.|+.++| +| ++..+++++.||+ +||...
T Consensus 236 --g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~-d~~~La~a~edG~-klw~~d-------------- 296 (588)
T 2j04_A 236 --DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEK-ESTILLMSNKTSY-KVLLED-------------- 296 (588)
T ss_dssp --TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCS-SCEEEEECSSCEE-EEEESS--------------
T ss_pred --CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCC-CCCEEEEEcCCCC-EEEeec--------------
Confidence 68999887 699999999988775555489999999999 99 7788999999999 999986
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc----cccccceeecCCCccEEEc
Q 048801 633 LVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ----KDAKYDQFFLGDYRPLIRD 684 (1715)
Q Consensus 633 V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~----k~~~~~~~fs~D~r~L~~d 684 (1715)
.++|+||+..+++. |+++++|++..+... ....+...|+|||..|+..
T Consensus 297 --~~~~spd~~l~a~~--d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~ 348 (588)
T 2j04_A 297 --ELHVTADNIIAPYL--EKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIV 348 (588)
T ss_dssp --SEEEECCCSSHHHH--HHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEE
T ss_pred --cEEECCCceEEEEc--CCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEE
Confidence 25699999888875 899999998555422 1224567889999877643
No 107
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=2e-28 Score=298.90 Aligned_cols=287 Identities=19% Similarity=0.254 Sum_probs=231.7
Q ss_pred CeEEEEEcCCCCEE-EEEeCCCcEEEEeCCCC----cEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCeeEEEECCCC-
Q 048801 245 AVYCAIFDRSGRFV-ITGSDDRLVKIWSMETA----FCLASCRGHEGDITDLAVSS-NNTLVASASNDFVIRVWRLPDG- 317 (1715)
Q Consensus 245 ~Vt~VafSpDG~~L-aTGS~DGtIrIWDl~tg----k~l~tL~gHs~~VtsLafSp-Dg~lLASGS~DGtIrVWDl~tg- 317 (1715)
...+++++|+...+ ++|+.||.|+||++... ..+..+.+|.+.|++++|+| ++.+||+|+.||+|+||++.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 34467888877544 45788999999999654 24556789999999999999 9999999999999999999988
Q ss_pred ------CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 318 ------LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 318 ------~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
.++..+.+|...|++++|+|++.. +|++++.||.|++||+.+++.+..+.
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~---------------------- 171 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQN--VLLSAGCDNVILVWDVGTGAAVLTLG---------------------- 171 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTT--EEEEEETTSCEEEEETTTTEEEEEEC----------------------
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCC--EEEEEcCCCEEEEEECCCCCccEEEe----------------------
Confidence 678899999999999999999742 89999999999999999876554431
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee-cCCCCC-eeEEEEccCcccccccccc
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL-SGHEND-VNYVQFSGCAVASRSAMSD 469 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l-~gH~~~-V~sLafspdg~as~~~~~~ 469 (1715)
...|...|.+++|+|+|.+|++|+.||.|++||+.++ ..+..+ .+|.+. +.++.|+|++
T Consensus 172 -~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~--------- 232 (402)
T 2aq5_A 172 -PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG---------TVVAEKDRPHEGTRPVHAVFVSEG--------- 232 (402)
T ss_dssp -TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT---------EEEEEEECSSCSSSCCEEEECSTT---------
T ss_pred -cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC---------ceeeeeccCCCCCcceEEEEcCCC---------
Confidence 0235667999999999999999999999999999874 335555 678775 8999999986
Q ss_pred cccccccccccCCcccCceEEEE---cCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCC
Q 048801 470 AFKEENVPKFKNSWFCHDNIVTC---SRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPR 546 (1715)
Q Consensus 470 ~~~~~~~~~~~~s~~~~~~LaSg---S~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~ 546 (1715)
.+|++| +.|+.|++||+.+..... ......+..
T Consensus 233 -----------------~~l~~g~~~~~d~~i~iwd~~~~~~~~---------------------------~~~~~~~~~ 268 (402)
T 2aq5_A 233 -----------------KILTTGFSRMSERQVALWDTKHLEEPL---------------------------SLQELDTSS 268 (402)
T ss_dssp -----------------EEEEEEECTTCCEEEEEEETTBCSSCS---------------------------EEEECCCCS
T ss_pred -----------------cEEEEeccCCCCceEEEEcCccccCCc---------------------------eEEeccCCC
Confidence 688888 799999999998643100 011224566
Q ss_pred CeeEEEeCCCCCEEEE-EecCCeEEEEECCCCce-EEEEec--CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 048801 547 GVNMIVWSLDNRFVLA-AIMDCRICVWNAVDGSL-VHSLTG--HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 547 ~VtslafSPDG~~LaT-gs~DGtI~IWDl~sg~~-l~tL~g--H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk 621 (1715)
.|.+++|+|++.+|++ |+.|+.|++|++.+++. +..+.. |...|.+++|+| ++.+++ +.++.+++|++.++.
T Consensus 269 ~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp-~~~~~~--s~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 269 GVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP-KRGLEV--NKCEIARFYKLHERK 344 (402)
T ss_dssp SCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECC-GGGSCG--GGTEEEEEEEEETTE
T ss_pred ceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEec-ccccce--ecceeEEEEEcCCCc
Confidence 7999999999999975 55799999999999884 555554 458999999999 666665 357799999987654
No 108
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.1e-28 Score=299.75 Aligned_cols=308 Identities=11% Similarity=0.145 Sum_probs=240.5
Q ss_pred CCCCCceeeeeecc-ccCcccccCCCCcccccccccccCcccccc------ceeEEEEcCCCCCeEEEEEcCCCCEEEEE
Q 048801 189 HMQADQVHGLSLRE-IGGGFKKHHRAPSVCSACYAIAKPSTMVQK------MQNIKKLRGHRDAVYCAIFDRSGRFVITG 261 (1715)
Q Consensus 189 ~~~~d~V~~ls~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~k~l~~L~GH~~~Vt~VafSpDG~~LaTG 261 (1715)
..|.+.|.++.|.+ .+..++.+.....+. .|.+.. .+....+ +|.+.|++++|+|++.+|++|
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~---------vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~ 129 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIK---------IWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVS 129 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEE---------EEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEE---------EeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEE
Confidence 34678899999988 665555443333222 222222 2223333 599999999999999999999
Q ss_pred eCCCcEEEEeCC---CCcEEEEecC------------CCCCeEEEE--ECCCCCEEEEEeCCCeeEEEECCCCCceEEEe
Q 048801 262 SDDRLVKIWSME---TAFCLASCRG------------HEGDITDLA--VSSNNTLVASASNDFVIRVWRLPDGLPISVLR 324 (1715)
Q Consensus 262 S~DGtIrIWDl~---tgk~l~tL~g------------Hs~~VtsLa--fSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~ 324 (1715)
+.||.|+|||+. +++.+..+.+ +...+.++. +++++.+|++|+.||.|++||+.+++++..+.
T Consensus 130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 209 (437)
T 3gre_A 130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE 209 (437)
T ss_dssp ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence 999999999994 5655554432 456677777 56889999999999999999999999999999
Q ss_pred C--CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeE
Q 048801 325 G--HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILC 402 (1715)
Q Consensus 325 g--H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vts 402 (1715)
+ |.+.|++++|+|++. +|++|+.||.|++||+++++.+..+.. .+...|.+
T Consensus 210 ~~~h~~~v~~~~~s~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------~~~~~v~~ 262 (437)
T 3gre_A 210 NSPRHGAVSSICIDEECC---VLILGTTRGIIDIWDIRFNVLIRSWSF------------------------GDHAPITH 262 (437)
T ss_dssp CCGGGCCEEEEEECTTSC---EEEEEETTSCEEEEETTTTEEEEEEBC------------------------TTCEEEEE
T ss_pred cCCCCCceEEEEECCCCC---EEEEEcCCCeEEEEEcCCccEEEEEec------------------------CCCCceEE
Confidence 8 899999999999987 899999999999999998776554422 23456999
Q ss_pred EEEc----cCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccccc
Q 048801 403 CAYN----ANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPK 478 (1715)
Q Consensus 403 lafS----pdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~ 478 (1715)
++|+ +++.+|++|+.||.|+|||+.++ ..+..+.+|...+..+.|+|++.
T Consensus 263 ~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~----------------- 316 (437)
T 3gre_A 263 VEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG---------HCQYAFINSDEQPSMEHFLPIEK----------------- 316 (437)
T ss_dssp EEECTTTCTTEEEEEEESTTEEEEEEETTTT---------EEEEEEESSSSCCCGGGGSCBCS-----------------
T ss_pred EEeccccCCCccEEEEEcCCCcEEEEEcCCC---------cEEEEEEcCCCCCccceeccccc-----------------
Confidence 9665 46889999999999999999874 45677888888877777776541
Q ss_pred ccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccccc--CCCCCeeEEEeCCC
Q 048801 479 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLL--PTPRGVNMIVWSLD 556 (1715)
Q Consensus 479 ~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~--~h~~~VtslafSPD 556 (1715)
.+ .+ ..+. .|...|++++|+ +
T Consensus 317 ---------~l----~~-------------------------------------------~~~~~~~~~~~v~~l~~~-~ 339 (437)
T 3gre_A 317 ---------GL----EE-------------------------------------------LNFCGIRSLNALSTISVS-N 339 (437)
T ss_dssp ---------SG----GG-------------------------------------------CCCCCCCSGGGGCCEEEE-T
T ss_pred ---------cc----cc-------------------------------------------ceecccccCCceEEEEEC-C
Confidence 11 00 0011 266789999999 8
Q ss_pred CCEEEEEecCCeEEEEECCCCceEEEEec-------------------------------------CCCCeEEEEEccC-
Q 048801 557 NRFVLAAIMDCRICVWNAVDGSLVHSLTG-------------------------------------HSASSYVLDVHPF- 598 (1715)
Q Consensus 557 G~~LaTgs~DGtI~IWDl~sg~~l~tL~g-------------------------------------H~~~V~sLafSP~- 598 (1715)
+.+|++|+.|+.|++||+.+++.+..+.+ |...|++++|+++
T Consensus 340 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~ 419 (437)
T 3gre_A 340 DKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVD 419 (437)
T ss_dssp TEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESS
T ss_pred ceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccC
Confidence 89999999999999999999988877765 8899999999995
Q ss_pred CCcEEEEEeCCCcEEEEE
Q 048801 599 NPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 599 dg~lLaSgs~DGtI~VWD 616 (1715)
+..+|++|+.||.|+||+
T Consensus 420 ~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 420 ETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp SSEEEEEEETTSCEEEEC
T ss_pred CceEEEEEcCCceEEEeC
Confidence 367999999999999995
No 109
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-28 Score=326.93 Aligned_cols=262 Identities=22% Similarity=0.349 Sum_probs=218.5
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCcEEEEecCCCCCeEEEEECCC--CCEEEEEeCCCeeEE
Q 048801 236 IKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSME--TAFCLASCRGHEGDITDLAVSSN--NTLVASASNDFVIRV 311 (1715)
Q Consensus 236 l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~--tgk~l~tL~gHs~~VtsLafSpD--g~lLASGS~DGtIrV 311 (1715)
+..+.||.+.|++++|+|+|++|++|+.||.|+||++. ++..+..+.+|.+.|++++|+++ +.+|++|+.||.|+|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 45689999999999999999999999999999999998 66788899999999999999988 999999999999999
Q ss_pred EECCCCC--ceEEEeCCCCCeEEEEecCC--CCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 312 WRLPDGL--PISVLRGHTGAVTAIAFSPR--PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 312 WDl~tg~--~l~~L~gH~~~VtsLafSPd--g~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
||+.++. .+..+.+|...|++++|+|+ +. +|++|+.||.|++||+.++.......
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~---~l~sgs~dg~I~vwdl~~~~~~~~~~------------------ 140 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP---LLLVASSDGKVSVVEFKENGTTSPII------------------ 140 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCS---EEEEEETTSEEEEEECCSSSCCCCEE------------------
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCC---EEEEEeCCCcEEEEEeecCCCcceeE------------------
Confidence 9999886 77788899999999999998 66 89999999999999998764322221
Q ss_pred CCCCCCCCCCcceeEEEEcc-------------CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEE
Q 048801 388 GPSSSNGLQSHQILCCAYNA-------------NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYV 454 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafSp-------------dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sL 454 (1715)
...|...|.+++|+| ++.+|++|+.||.|++||+.++. ........+.+|...|.++
T Consensus 141 -----~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~-----~~~~~~~~~~~h~~~V~~l 210 (753)
T 3jro_A 141 -----IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA-----QTYVLESTLEGHSDWVRDV 210 (753)
T ss_dssp -----EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT-----TEEEEEEEECCCSSCEEEE
T ss_pred -----eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc-----ccceeeeeecCCCCcEEEE
Confidence 123567799999999 58999999999999999998642 1234567788999999999
Q ss_pred EEccC---cccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCC
Q 048801 455 QFSGC---AVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQ 531 (1715)
Q Consensus 455 afspd---g~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~ 531 (1715)
+|+|+ + ..|++++.||.|++||+.++....
T Consensus 211 ~~sp~~~~~--------------------------~~l~s~s~Dg~I~iwd~~~~~~~~--------------------- 243 (753)
T 3jro_A 211 AWSPTVLLR--------------------------SYLASVSQDRTCIIWTQDNEQGPW--------------------- 243 (753)
T ss_dssp EECCCCSSS--------------------------EEEEEEESSSCEEEEEESSSSSCC---------------------
T ss_pred EeccCCCCC--------------------------CEEEEEecCCEEEEecCCCCCCcc---------------------
Confidence 99998 5 799999999999999998643110
Q ss_pred CCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCc
Q 048801 532 PPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS 578 (1715)
Q Consensus 532 ~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~ 578 (1715)
.........|...|++++|+|+|.+|++|+.||.|+||++.++.
T Consensus 244 ---~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 244 ---KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp ---BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ---eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 01122334577889999999999999999999999999998643
No 110
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.2e-28 Score=304.02 Aligned_cols=322 Identities=14% Similarity=0.061 Sum_probs=239.8
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCC
Q 048801 283 GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYS 362 (1715)
Q Consensus 283 gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg 362 (1715)
.-...|.+++|+|||+++||++.|++|+ |...++.+ .+|...|.+++|+|++ .++.+.+|+.
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg----------~~~~~~~~~~--- 74 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE----------FENKLDFELA--- 74 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC----------CCCTTTTSCC---
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC----------CcceEEEEeC---
Confidence 3567899999999999999999999999 76555544 7999999999999986 3455555543
Q ss_pred CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeee
Q 048801 363 QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442 (1715)
Q Consensus 363 ~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~ 442 (1715)
+....+ ...+...|.+++|+|+|.+||+++.||.|+||+... .+.
T Consensus 75 ~~~~~~------------------------~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----------~l~ 119 (588)
T 2j04_A 75 QQNGLL------------------------NSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----------MLT 119 (588)
T ss_dssp CSSCSS------------------------TTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-----------EEE
T ss_pred CCceEe------------------------ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-----------eee
Confidence 211111 112256699999999999999999999999999632 345
Q ss_pred eecCCCC-----CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccc
Q 048801 443 VLSGHEN-----DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTR 517 (1715)
Q Consensus 443 ~l~gH~~-----~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~ 517 (1715)
.+. |.. .|.+++|+|++ ++|++|+.||+|+|||+.++.....
T Consensus 120 ~l~-~~~~~~~~sv~svafSPDG--------------------------~~LAsgs~DGtVkIWd~~~~~l~~~------ 166 (588)
T 2j04_A 120 NLD-SKGNLSSRTYHCFEWNPIE--------------------------SSIVVGNEDGELQFFSIRKNSENTP------ 166 (588)
T ss_dssp ECC-CSSCSTTTCEEEEEECSSS--------------------------SCEEEEETTSEEEEEECCCCTTTCC------
T ss_pred ecc-CCCccccccEEEEEEcCCC--------------------------CEEEEEcCCCEEEEEECCCCccccc------
Confidence 555 554 59999999997 8999999999999999986431000
Q ss_pred cccccCCCCCCCCCCCCCCCcccc----cCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCce---EEEE-ecCCCC
Q 048801 518 AYHLKVPPPPLPPQPPRGGPRQRL----LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL---VHSL-TGHSAS 589 (1715)
Q Consensus 518 ~~~l~~~~~~~~~~~~~g~~~~~l----~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~---l~tL-~gH~~~ 589 (1715)
.-..+..+ .+|...|.+++|+||| |++++.|++|++|++.++.. ..++ .+|...
T Consensus 167 ----------------~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~ 228 (588)
T 2j04_A 167 ----------------EFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRK 228 (588)
T ss_dssp ----------------CCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSC
T ss_pred ----------------cceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCc
Confidence 00001222 4577899999999999 88899999999999988773 4567 488899
Q ss_pred eEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCccccc
Q 048801 590 SYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKF--SPDGTSIVLSDDVGQIYLLNTGQGESQKD 667 (1715)
Q Consensus 590 V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svaf--SPDG~~LAsgs~DG~I~IWdl~tGe~~k~ 667 (1715)
|.+++|+ +.+||+++ +|+|++||+.+++......+|...|.+++| +|||..|++++.+|. ++|...
T Consensus 229 V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d------- 296 (588)
T 2j04_A 229 ITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED------- 296 (588)
T ss_dssp CCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS-------
T ss_pred EEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec-------
Confidence 9999998 37788877 699999999888774444479999999999 999999999999999 999986
Q ss_pred cccceeecCCCccEEEcCCCCeeecccccccCcCCCCCcccCCCCCCCCCccchhhhhhcccccceeecCCCCeEEeee
Q 048801 668 AKYDQFFLGDYRPLIRDSLGNVLDQETQLVPHRRNIQDPLCDSSMIPYEEPYQSMYQQRRLGALGIEWRPSSIKLAIGL 746 (1715)
Q Consensus 668 ~~~~~~fs~D~r~L~~d~~g~vld~~tq~~p~~~~~~~~lvD~~~~p~p~~~q~~~q~r~~g~~~l~~sPdg~~lAvg~ 746 (1715)
...|++|+..++.. ++.+ . ++. ..+.+ ++ .+.. .....+++|+|||..+|++.
T Consensus 297 ---~~~~spd~~l~a~~-d~~v-----~-------lW~----~~g~~----l~-~~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 297 ---ELHVTADNIIAPYL-EKKF-----K-------KWS----TIWNE----FN-NYET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp ---SEEEECCCSSHHHH-HHHH-----H-------HTT----TTTTS----SS-SSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred ---cEEECCCceEEEEc-CCEE-----E-------EEE----CCCCc----ee-eecc-ceEEEEEEECCCCCEEEEEE
Confidence 13377888766442 1111 1 011 11111 11 1111 23456899999999999883
No 111
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=6.9e-28 Score=294.21 Aligned_cols=290 Identities=16% Similarity=0.193 Sum_probs=229.4
Q ss_pred CeEEEEECCCCCEE-EEEeCCCeeEEEECCCC----CceEEEeCCCCCeEEEEecC-CCCcceEEEEecCCCcEEEEecC
Q 048801 287 DITDLAVSSNNTLV-ASASNDFVIRVWRLPDG----LPISVLRGHTGAVTAIAFSP-RPSAIYQLLSSSDDGTCRIWDAR 360 (1715)
Q Consensus 287 ~VtsLafSpDg~lL-ASGS~DGtIrVWDl~tg----~~l~~L~gH~~~VtsLafSP-dg~~~~~LaSgS~DGtVrIWDl~ 360 (1715)
....++++|+...+ ++++.||.|+||++... ..+..+.+|.+.|++++|+| ++. +|++|+.||+|++||+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~---~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN---VIASGSEDCTVMVWEIP 112 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT---EEEEEETTSEEEEEECC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC---EEEEEeCCCeEEEEEcc
Confidence 34468888887544 45788999999999654 34566789999999999999 666 89999999999999998
Q ss_pred CCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCce
Q 048801 361 YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIH 439 (1715)
Q Consensus 361 tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~ 439 (1715)
++...... .........|...|.+++|+|++ .+|++|+.||.|+|||+.++ .
T Consensus 113 ~~~~~~~~------------------~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~---------~ 165 (402)
T 2aq5_A 113 DGGLVLPL------------------REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG---------A 165 (402)
T ss_dssp TTCCSSCB------------------CSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT---------E
T ss_pred CCCCcccc------------------CCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC---------C
Confidence 77532211 01122234567889999999998 69999999999999999864 3
Q ss_pred eeeee--cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccc
Q 048801 440 ELDVL--SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTR 517 (1715)
Q Consensus 440 ~l~~l--~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~ 517 (1715)
.+..+ .+|...|.+++|+|++ ..|++++.||.|++||+++++.
T Consensus 166 ~~~~~~~~~~~~~v~~~~~~~~~--------------------------~~l~~~~~d~~i~iwd~~~~~~--------- 210 (402)
T 2aq5_A 166 AVLTLGPDVHPDTIYSVDWSRDG--------------------------ALICTSCRDKRVRVIEPRKGTV--------- 210 (402)
T ss_dssp EEEEECTTTCCSCEEEEEECTTS--------------------------SCEEEEETTSEEEEEETTTTEE---------
T ss_pred ccEEEecCCCCCceEEEEECCCC--------------------------CEEEEEecCCcEEEEeCCCCce---------
Confidence 45666 7899999999999986 7999999999999999986442
Q ss_pred cccccCCCCCCCCCCCCCCCcccc-cCCCCC-eeEEEeCCCCCEEEEE---ecCCeEEEEECCCCce-EEEEe-cCCCCe
Q 048801 518 AYHLKVPPPPLPPQPPRGGPRQRL-LPTPRG-VNMIVWSLDNRFVLAA---IMDCRICVWNAVDGSL-VHSLT-GHSASS 590 (1715)
Q Consensus 518 ~~~l~~~~~~~~~~~~~g~~~~~l-~~h~~~-VtslafSPDG~~LaTg---s~DGtI~IWDl~sg~~-l~tL~-gH~~~V 590 (1715)
...+ ..|... +.+++|+|++.+|++| +.|+.|++||+.++.. +.... .|...|
T Consensus 211 --------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 270 (402)
T 2aq5_A 211 --------------------VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGV 270 (402)
T ss_dssp --------------------EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSC
T ss_pred --------------------eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCce
Confidence 1222 344444 8899999999999999 7899999999998764 33333 577889
Q ss_pred EEEEEccCCCcEEEEEeCCCcEEEEECCCCce-EEEEEc--ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 048801 591 YVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTP-IRIYEI--GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 591 ~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~-l~tl~~--h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe 663 (1715)
.+++|+|++..++++|+.||.|++||+.+++. +..+.. +...|.+++|+|++.++++ .++.+++|++.+++
T Consensus 271 ~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 271 LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp EEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 99999995544555677899999999999884 555554 3478999999999998875 56699999998764
No 112
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.7e-27 Score=289.14 Aligned_cols=308 Identities=11% Similarity=0.044 Sum_probs=232.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---EEEEecC-------------------------------------
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAF---CLASCRG------------------------------------- 283 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk---~l~tL~g------------------------------------- 283 (1715)
.+|.|++|+++|++|++++ ++.|++||+.+|+ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 5789999999999777664 7899999999998 6666653
Q ss_pred -----------------CCCCeEEEEECCCCCEE-EEEeCCCeeEEEECC--CCCceEEEe--CCCCCeEEEEecCCCCc
Q 048801 284 -----------------HEGDITDLAVSSNNTLV-ASASNDFVIRVWRLP--DGLPISVLR--GHTGAVTAIAFSPRPSA 341 (1715)
Q Consensus 284 -----------------Hs~~VtsLafSpDg~lL-ASGS~DGtIrVWDl~--tg~~l~~L~--gH~~~VtsLafSPdg~~ 341 (1715)
|.+.|++++|+|++++| |+|+.||.|+|||+. ++..+..+. .|...|++++|+|++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~- 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT- 162 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS-
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC-
Confidence 33479999999999996 899999999999999 888888886 5678999999999997
Q ss_pred ceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC---CCeEEEecCC
Q 048801 342 IYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN---GTVFVTGSSD 418 (1715)
Q Consensus 342 ~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd---G~~LatGs~D 418 (1715)
+|++++.+|.|++|++.++..... .......|...|.+++|+|+ +.+|++|+.|
T Consensus 163 --~l~~~~~~g~v~~~~~~~~~~~~~---------------------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d 219 (450)
T 2vdu_B 163 --TVIIADKFGDVYSIDINSIPEEKF---------------------TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD 219 (450)
T ss_dssp --EEEEEETTSEEEEEETTSCCCSSC---------------------CCCCSEECSSCEEEEEEEECTTSCEEEEEEETT
T ss_pred --EEEEEeCCCcEEEEecCCcccccc---------------------cceeeecccCceEEEEEcCCCCCCcEEEEEcCC
Confidence 899999999999999987653320 01122346678999999999 9999999999
Q ss_pred CeEEEEeCCCCCccCCCCCceeeee-ecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCe
Q 048801 419 TFARVWSACKSSVEDSEQPIHELDV-LSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGS 497 (1715)
Q Consensus 419 G~IrVWDl~t~~~~~~~~~~~~l~~-l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGs 497 (1715)
+.|++||+.++. .+.. +.+|...|.+++|+ ++ .+|++++.|+.
T Consensus 220 ~~i~vwd~~~~~---------~~~~~~~~h~~~v~~~~~s-d~--------------------------~~l~s~~~d~~ 263 (450)
T 2vdu_B 220 EHIKISHYPQCF---------IVDKWLFGHKHFVSSICCG-KD--------------------------YLLLSAGGDDK 263 (450)
T ss_dssp SCEEEEEESCTT---------CEEEECCCCSSCEEEEEEC-ST--------------------------TEEEEEESSSE
T ss_pred CcEEEEECCCCc---------eeeeeecCCCCceEEEEEC-CC--------------------------CEEEEEeCCCe
Confidence 999999998653 2333 66899999999999 75 79999999999
Q ss_pred EEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEEC--
Q 048801 498 AIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNA-- 574 (1715)
Q Consensus 498 IrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl-- 574 (1715)
|++||+.+++....+........+..... . ................|.+++|+|++++|++++ .++.|+||++
T Consensus 264 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~ 339 (450)
T 2vdu_B 264 IFAWDWKTGKNLSTFDYNSLIKPYLNDQH-L---APPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSE 339 (450)
T ss_dssp EEEEETTTCCEEEEEECHHHHGGGCCTTS-B---C----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECS
T ss_pred EEEEECCCCcEeeeecchhhhhhhhhhcc-c---ccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEecc
Confidence 99999998765433321110000000000 0 000000000112345799999999999999999 8999999999
Q ss_pred CCC---ceEEEEecCCCCeEEEEEccCCCcEEEEEeC------CCcEEEEECC
Q 048801 575 VDG---SLVHSLTGHSASSYVLDVHPFNPRIAMSAGY------DGRTIVWDIW 618 (1715)
Q Consensus 575 ~sg---~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~------DGtI~VWDl~ 618 (1715)
.++ ..+..+.+| +.|.+++|+| ++.++++++. +..|.||.+.
T Consensus 340 ~~~~~l~~~~~~~~~-~~v~~~~~~~-~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 340 KQKGDLALKQIITFP-YNVISLSAHN-DEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp SSTTCEEEEEEEECS-SCEEEEEEET-TEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred CCCCceeeccEeccC-CceEEEEecC-CcEEEEEecccCCCCCCcceEEEEEE
Confidence 666 677788888 8899999999 5444444333 4557888754
No 113
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=3.1e-27 Score=285.21 Aligned_cols=306 Identities=12% Similarity=0.067 Sum_probs=213.1
Q ss_pred EEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEe
Q 048801 269 IWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS 348 (1715)
Q Consensus 269 IWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSg 348 (1715)
||++.+...+..+.+|...|++++|+|||++||+|+.++ ++||++.++..+..... ..+..+++.++++. .++++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~ 77 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNY--VAFVT 77 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSE--EEEEC
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCE--EEEEE
Confidence 677788888888899999999999999999999998775 78999988766655432 35778888887762 44678
Q ss_pred cCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCC
Q 048801 349 SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 349 S~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t 428 (1715)
+.|++|++||+.+++.+..+.. ...|.+++|+++. ++++ .++.|++||+.+
T Consensus 78 ~~d~~v~iWd~~~~~~~~~~~~--------------------------~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~ 128 (355)
T 3vu4_A 78 GVKEVVHIWDDVKKQDVSRIKV--------------------------DAPVKDLFLSREF--IVVS-YGDVISVFKFGN 128 (355)
T ss_dssp SSTTEEEEEETTTTEEEEEEEC--------------------------SSCEEEEEECSSE--EEEE-ETTEEEEEESST
T ss_pred CCccEEEEEECCCCcEEEEEEC--------------------------CCceEEEEEcCCE--EEEE-EcCEEEEEECCC
Confidence 8899999999998876654422 3458999998875 3333 478999999986
Q ss_pred C-CccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEE--EcCCCeEEEEecCC
Q 048801 429 S-SVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVT--CSRDGSAIIWIPRS 505 (1715)
Q Consensus 429 ~-~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaS--gS~DGsIrIWDl~t 505 (1715)
. +. +..+.. ....+++++ ..+++ |+.||.|++||+.+
T Consensus 129 ~~~~---------~~~~~~---~~~~~~~s~----------------------------~~la~~sg~~~g~v~iwd~~~ 168 (355)
T 3vu4_A 129 PWKR---------ITDDIR---FGGVCEFSN----------------------------GLLVYSNEFNLGQIHITKLQS 168 (355)
T ss_dssp TCCB---------SSCCEE---EEEEEEEET----------------------------TEEEEEESSCTTCEEEEECCC
T ss_pred Ccee---------eEEecc---CCceEEEEc----------------------------cEEEEeCCCcCcEEEEEECCC
Confidence 4 21 222222 333444444 24444 68999999999986
Q ss_pred CccCcccccccccccccCCCCCCCCCCCCCCC-cccccCCCCCeeEEEeCCCCCEEEEEecCCe-EEEEECCCCceEEEE
Q 048801 506 RRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP-RQRLLPTPRGVNMIVWSLDNRFVLAAIMDCR-ICVWNAVDGSLVHSL 583 (1715)
Q Consensus 506 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~-~~~l~~h~~~VtslafSPDG~~LaTgs~DGt-I~IWDl~sg~~l~tL 583 (1715)
+........ ........+ ...+.+|...|++++|+|+|++|++|+.|++ |+|||+.+++++..+
T Consensus 169 ~~~~~~~~~--------------~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~ 234 (355)
T 3vu4_A 169 SGSATTQDQ--------------GVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREF 234 (355)
T ss_dssp --------------------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred CCccccccc--------------cccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 431100000 000001122 5667889999999999999999999999998 999999999999999
Q ss_pred e-c-CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceE--EE------------------EEc---ccceEEEEEE
Q 048801 584 T-G-HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPI--RI------------------YEI---GRFKLVDGKF 638 (1715)
Q Consensus 584 ~-g-H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l--~t------------------l~~---h~~~V~svaf 638 (1715)
. + |...|++++|+| ++.+|++++.||+|+|||+..+... .. +.. .......++|
T Consensus 235 ~~g~h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 313 (355)
T 3vu4_A 235 RRGLDRADVVDMKWST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAW 313 (355)
T ss_dssp ECTTCCSCEEEEEECT-TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEE
T ss_pred EcCCCCCcEEEEEECC-CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEE
Confidence 8 6 999999999999 7889999999999999999765321 11 110 1112356899
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCc
Q 048801 639 SPDGTSIVLSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 639 SPDG~~LAsgs~DG~I~IWdl~tGe 663 (1715)
++||++|++++.||.+++|++..++
T Consensus 314 ~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 314 ISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp SSSSEEEEEETTTTEEEEEEEEEET
T ss_pred eCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 9999999999999999999987654
No 114
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=2.4e-26 Score=281.81 Aligned_cols=320 Identities=13% Similarity=0.098 Sum_probs=246.6
Q ss_pred CCCeEEEE---EcCCCCEEEEE--------------eCCC--cEEEEeCCCC--cEEEEecCCCCCeEEEEECCCCCEEE
Q 048801 243 RDAVYCAI---FDRSGRFVITG--------------SDDR--LVKIWSMETA--FCLASCRGHEGDITDLAVSSNNTLVA 301 (1715)
Q Consensus 243 ~~~Vt~Va---fSpDG~~LaTG--------------S~DG--tIrIWDl~tg--k~l~tL~gHs~~VtsLafSpDg~lLA 301 (1715)
...+..++ |+|++..++.. +.++ .|.+||..++ +.+..+..+. .+.+++|+|++.+++
T Consensus 60 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~ 138 (433)
T 3bws_A 60 NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAI 138 (433)
T ss_dssp TEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEE
T ss_pred CCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEE
Confidence 34456666 66666655443 2334 4444455445 5666666554 456999999888888
Q ss_pred EEeCCCeeEEEECCCCCceE-----EEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCC
Q 048801 302 SASNDFVIRVWRLPDGLPIS-----VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDA 376 (1715)
Q Consensus 302 SGS~DGtIrVWDl~tg~~l~-----~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~ 376 (1715)
+++.++.|++||+.+++.+. .+.+|.+.|.+++|++++. ++++++.|+.|++||+.+++.+..+.
T Consensus 139 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~s~~~d~~v~~~d~~~~~~~~~~~------- 208 (433)
T 3bws_A 139 PLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE---LWVSQMQANAVHVFDLKTLAYKATVD------- 208 (433)
T ss_dssp EBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE---EEEEEGGGTEEEEEETTTCCEEEEEE-------
T ss_pred EeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE---EEEEECCCCEEEEEECCCceEEEEEc-------
Confidence 88889999999999998887 3457889999999999886 88999999999999998876554432
Q ss_pred ccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEE-EecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEE
Q 048801 377 ITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFV-TGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQ 455 (1715)
Q Consensus 377 i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~La-tGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLa 455 (1715)
.+...+.+++|+|++..++ +++.++.|++||+.+++ .+..+..+ ..+.+++
T Consensus 209 ------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~---------~~~~~~~~-~~~~~~~ 260 (433)
T 3bws_A 209 ------------------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL---------EIRKTDKI-GLPRGLL 260 (433)
T ss_dssp ------------------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE---------EEEECCCC-SEEEEEE
T ss_pred ------------------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc---------EEEEecCC-CCceEEE
Confidence 2345689999999998774 55579999999997643 23444443 4589999
Q ss_pred EccCcccccccccccccccccccccCCcccCceEEEEc--------CCCeEEEEecCCCccCcccccccccccccCCCCC
Q 048801 456 FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS--------RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPP 527 (1715)
Q Consensus 456 fspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS--------~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~ 527 (1715)
|+|++ ..|++++ .||.|++||+.+++...
T Consensus 261 ~~~~g--------------------------~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~----------------- 297 (433)
T 3bws_A 261 LSKDG--------------------------KELYIAQFSASNQESGGGRLGIYSMDKEKLID----------------- 297 (433)
T ss_dssp ECTTS--------------------------SEEEEEEEESCTTCSCCEEEEEEETTTTEEEE-----------------
T ss_pred EcCCC--------------------------CEEEEEECCCCccccCCCeEEEEECCCCcEEe-----------------
Confidence 99986 5777776 58999999998643211
Q ss_pred CCCCCCCCCCcccccCCCCCeeEEEeCCCCCEE-EEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEE
Q 048801 528 LPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFV-LAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSA 606 (1715)
Q Consensus 528 ~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~L-aTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSg 606 (1715)
...+...+.+++|+|+++.| ++++.++.|++||+.+++.+..+. +...+.+++|+| ++.+|+++
T Consensus 298 -------------~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dg~~l~~~ 362 (433)
T 3bws_A 298 -------------TIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSP-DGKYLYVS 362 (433)
T ss_dssp -------------EEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECT-TSSEEEEE
T ss_pred -------------eccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcC-CCCEEEEE
Confidence 12234468899999999755 666889999999999999888876 677899999999 56666666
Q ss_pred eC---------------CCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeC-CCeEEEEECC
Q 048801 607 GY---------------DGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDD-VGQIYLLNTG 660 (1715)
Q Consensus 607 s~---------------DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~-DG~I~IWdl~ 660 (1715)
+. ||.|++||+.+++.+..+.. ...+.+++|+|||++|++++. ||.|++|++.
T Consensus 363 ~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 363 CRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp ECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred ecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 54 57999999999999998885 457899999999999998875 9999999985
No 115
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.7e-26 Score=286.89 Aligned_cols=284 Identities=11% Similarity=0.040 Sum_probs=227.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC---ceEEEeC-------------------------------------
Q 048801 286 GDITDLAVSSNNTLVASASNDFVIRVWRLPDGL---PISVLRG------------------------------------- 325 (1715)
Q Consensus 286 ~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~---~l~~L~g------------------------------------- 325 (1715)
.+|.+++|+++|++|+++ .++.|++||+.+|+ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578999999999977666 57899999999998 6665553
Q ss_pred -----------------CCCCeEEEEecCCCCcceE-EEEecCCCcEEEEecC--CCCCcceecCCCCCCCccCccCCCC
Q 048801 326 -----------------HTGAVTAIAFSPRPSAIYQ-LLSSSDDGTCRIWDAR--YSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 326 -----------------H~~~VtsLafSPdg~~~~~-LaSgS~DGtVrIWDl~--tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
|.+.|++++|+|++. + +++++.||.|++||+. ++..+..+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~---~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~--------------- 145 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES---RLIACADSDKSLLVFDVDKTSKNVLKLRKR--------------- 145 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSS---EEEEEEGGGTEEEEEEECSSSSSCEEEEEE---------------
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCC---EEEEEECCCCeEEEEECcCCCCceeeeeec---------------
Confidence 333799999999998 5 4899999999999998 6665544321
Q ss_pred CCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCce-eeeeecCCCCCeeEEEEccC---cc
Q 048801 386 NNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIH-ELDVLSGHENDVNYVQFSGC---AV 461 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~-~l~~l~gH~~~V~sLafspd---g~ 461 (1715)
..+...|.+++|+|+|.+|++|+.+|.|++|++.++.. .. ....+.+|...|.+++|+|+ +
T Consensus 146 --------~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~------~~~~~~~~~~h~~~v~~~~~sp~~~~~- 210 (450)
T 2vdu_B 146 --------FCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPE------EKFTQEPILGHVSMLTDVHLIKDSDGH- 210 (450)
T ss_dssp --------EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCC------SSCCCCCSEECSSCEEEEEEEECTTSC-
T ss_pred --------ccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccc------ccccceeeecccCceEEEEEcCCCCCC-
Confidence 12345699999999999999999999999999987542 11 33467789999999999997 5
Q ss_pred cccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc-
Q 048801 462 ASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR- 540 (1715)
Q Consensus 462 as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~- 540 (1715)
.+|++++.|+.|++||+.++.. ...
T Consensus 211 -------------------------~~l~s~~~d~~i~vwd~~~~~~-----------------------------~~~~ 236 (450)
T 2vdu_B 211 -------------------------QFIITSDRDEHIKISHYPQCFI-----------------------------VDKW 236 (450)
T ss_dssp -------------------------EEEEEEETTSCEEEEEESCTTC-----------------------------EEEE
T ss_pred -------------------------cEEEEEcCCCcEEEEECCCCce-----------------------------eeee
Confidence 6999999999999999986431 222
Q ss_pred ccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec-------------------------CCCCeEEEEE
Q 048801 541 LLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG-------------------------HSASSYVLDV 595 (1715)
Q Consensus 541 l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g-------------------------H~~~V~sLaf 595 (1715)
+.+|...|.+++|+ ++.+|++|+.|+.|+|||+.+++++..+.. +...|.+++|
T Consensus 237 ~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 237 LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 34688899999999 999999999999999999999999988863 2457899999
Q ss_pred ccCCCcEEEEEe-CCCcEEEEEC--CCC---ceEEEEEcccceEEEEEEcCCCCEEEEEeC------CCeEEEEECC
Q 048801 596 HPFNPRIAMSAG-YDGRTIVWDI--WEG---TPIRIYEIGRFKLVDGKFSPDGTSIVLSDD------VGQIYLLNTG 660 (1715)
Q Consensus 596 SP~dg~lLaSgs-~DGtI~VWDl--~tg---k~l~tl~~h~~~V~svafSPDG~~LAsgs~------DG~I~IWdl~ 660 (1715)
+| ++.+|++++ .|+.|+||++ .++ +.+..+..+ ..|.+++|+|++.++++++. +..|.||.+.
T Consensus 316 ~~-~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 316 SK-NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp CS-SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred eC-CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 99 667777777 8999999999 666 677778866 78999999996543333332 4457777653
No 116
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=1.2e-26 Score=280.04 Aligned_cols=292 Identities=11% Similarity=0.116 Sum_probs=213.5
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEE-EEEeCCCeeE
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLV-ASASNDFVIR 310 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lL-ASGS~DGtIr 310 (1715)
..+.+..+.+|.+.|+|++|+|||++||+|+.+| ++||++.++..+.....+ .+..+++.++++++ ++|+.|++|+
T Consensus 8 ~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~ 84 (355)
T 3vu4_A 8 TRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVH 84 (355)
T ss_dssp -----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEE
T ss_pred ccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEE
Confidence 3455667789999999999999999999998775 789999988776654432 57888999988877 5677889999
Q ss_pred EEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCC-CCcceecCCCCCCCccCccCCCCCCCC
Q 048801 311 VWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYS-QYSPRIYLPKPPDAITGKSNVPSNNGP 389 (1715)
Q Consensus 311 VWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg-~~l~~i~~~~~~~~i~g~~~~~~~~~~ 389 (1715)
|||+.+++++..+. |...|.+++|+++. ++++ .|+.|++||+.++ +.+..+..
T Consensus 85 iWd~~~~~~~~~~~-~~~~v~~v~~~~~~-----~~~~-~~~~i~i~d~~~~~~~~~~~~~------------------- 138 (355)
T 3vu4_A 85 IWDDVKKQDVSRIK-VDAPVKDLFLSREF-----IVVS-YGDVISVFKFGNPWKRITDDIR------------------- 138 (355)
T ss_dssp EEETTTTEEEEEEE-CSSCEEEEEECSSE-----EEEE-ETTEEEEEESSTTCCBSSCCEE-------------------
T ss_pred EEECCCCcEEEEEE-CCCceEEEEEcCCE-----EEEE-EcCEEEEEECCCCceeeEEecc-------------------
Confidence 99999999999887 67799999999863 3333 4789999999876 43322210
Q ss_pred CCCCCCCCcceeEEEEccCCCeEEE--ecCCCeEEEEeCCCCCccCCC------CCcee-eeeecCCCCCeeEEEEccCc
Q 048801 390 SSSNGLQSHQILCCAYNANGTVFVT--GSSDTFARVWSACKSSVEDSE------QPIHE-LDVLSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 390 ~~~~~~h~~~VtslafSpdG~~Lat--Gs~DG~IrVWDl~t~~~~~~~------~~~~~-l~~l~gH~~~V~sLafspdg 460 (1715)
....+++++ .++++ |+.+|.|++||+.++...... ....+ +..+.+|...|.+++|+|++
T Consensus 139 ---------~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g 207 (355)
T 3vu4_A 139 ---------FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS 207 (355)
T ss_dssp ---------EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS
T ss_pred ---------CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC
Confidence 234566666 55555 688999999999864311000 00112 67789999999999999987
Q ss_pred ccccccccccccccccccccCCcccCceEEEEcCCCe-EEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcc
Q 048801 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGS-AIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQ 539 (1715)
Q Consensus 461 ~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGs-IrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~ 539 (1715)
.+|++|+.||+ |++||+.+++. +.
T Consensus 208 --------------------------~~l~s~s~d~~~v~iwd~~~~~~-----------------------------~~ 232 (355)
T 3vu4_A 208 --------------------------DMVATCSQDGTIIRVFKTEDGVL-----------------------------VR 232 (355)
T ss_dssp --------------------------SEEEEEETTCSEEEEEETTTCCE-----------------------------EE
T ss_pred --------------------------CEEEEEeCCCCEEEEEECCCCcE-----------------------------EE
Confidence 79999999998 99999987442 22
Q ss_pred ccc-C-CCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceE--EEEe---------------------cCCCCeEEEE
Q 048801 540 RLL-P-TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLV--HSLT---------------------GHSASSYVLD 594 (1715)
Q Consensus 540 ~l~-~-h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l--~tL~---------------------gH~~~V~sLa 594 (1715)
.+. + |...|.+++|+|+|++|++++.|++|+|||+..+... ..+. .+......++
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 312 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIA 312 (355)
T ss_dssp EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEE
T ss_pred EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEE
Confidence 333 3 7889999999999999999999999999999765311 1110 1122346789
Q ss_pred EccCCCcEEEEEeCCCcEEEEECCC
Q 048801 595 VHPFNPRIAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 595 fSP~dg~lLaSgs~DGtI~VWDl~t 619 (1715)
|++ ++.+|++++.||.+++|++..
T Consensus 313 ~~~-d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 313 WIS-ESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp ESS-SSEEEEEETTTTEEEEEEEEE
T ss_pred EeC-CCCEEEEEeCCCeEEEEEEEc
Confidence 999 778888999999999999754
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=9.3e-27 Score=288.01 Aligned_cols=263 Identities=20% Similarity=0.299 Sum_probs=217.4
Q ss_pred EEecCCCCCeEEEEECCC-CCEEEEEeCCCeeEEEECCC----------CCceEEEeCCCCCeEEEEecCCCCcceEEEE
Q 048801 279 ASCRGHEGDITDLAVSSN-NTLVASASNDFVIRVWRLPD----------GLPISVLRGHTGAVTAIAFSPRPSAIYQLLS 347 (1715)
Q Consensus 279 ~tL~gHs~~VtsLafSpD-g~lLASGS~DGtIrVWDl~t----------g~~l~~L~gH~~~VtsLafSPdg~~~~~LaS 347 (1715)
..+.+|.+.|++++|+|+ +.+||+|+.||.|+||++.+ ..++..+.+|...|++|+|+|++.. +|++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~--~l~s 199 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG--YLLS 199 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT--EEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC--eEEE
Confidence 455679999999999997 78999999999999999986 6788899999999999999998764 7999
Q ss_pred ecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeC
Q 048801 348 SSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSA 426 (1715)
Q Consensus 348 gS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl 426 (1715)
|+.||.|++|++..+........ .......|...|.+++|+| ++.+|++++.||.|++||+
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~~~------------------~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~ 261 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRVID------------------AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDT 261 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGEEE------------------CSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred EeCCCeEEEEeCCCCCCCCceec------------------cceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEEC
Confidence 99999999999987532211100 0111234677899999999 6789999999999999999
Q ss_pred CCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCC
Q 048801 427 CKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 506 (1715)
Q Consensus 427 ~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~ 506 (1715)
++... ...+..+..|...|++++|+|++ ...|++|+.||.|++||+++.
T Consensus 262 ~~~~~------~~~~~~~~~~~~~v~~i~~~p~~-------------------------~~~l~tg~~dg~v~vwd~~~~ 310 (430)
T 2xyi_A 262 RNNNT------SKPSHTVDAHTAEVNCLSFNPYS-------------------------EFILATGSADKTVALWDLRNL 310 (430)
T ss_dssp TCSCS------SSCSEEEECCSSCEEEEEECSSC-------------------------TTEEEEEETTSEEEEEETTCT
T ss_pred CCCCC------CcceeEeecCCCCeEEEEeCCCC-------------------------CCEEEEEeCCCeEEEEeCCCC
Confidence 86421 23455667899999999999976 347999999999999999852
Q ss_pred ccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC-EEEEEecCCeEEEEECCC---------
Q 048801 507 RSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR-FVLAAIMDCRICVWNAVD--------- 576 (1715)
Q Consensus 507 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~-~LaTgs~DGtI~IWDl~s--------- 576 (1715)
. .++..+..|...|.+++|+|++. +|++++.|+.|+|||+..
T Consensus 311 ~----------------------------~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 362 (430)
T 2xyi_A 311 K----------------------------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED 362 (430)
T ss_dssp T----------------------------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHH
T ss_pred C----------------------------CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccc
Confidence 1 23445667888999999999995 689999999999999987
Q ss_pred -----CceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC
Q 048801 577 -----GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG 620 (1715)
Q Consensus 577 -----g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg 620 (1715)
.+++..+.+|...|++++|+|++..+|++++.||.|+||++..+
T Consensus 363 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 363 AEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 46788888999999999999965559999999999999998643
No 118
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=2.7e-26 Score=283.87 Aligned_cols=272 Identities=17% Similarity=0.282 Sum_probs=217.8
Q ss_pred EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcce
Q 048801 321 SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI 400 (1715)
Q Consensus 321 ~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~V 400 (1715)
..+..|.+.|++++|+|++.. +|++++.||.|++||+........ . ............|...|
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~--~lat~~~dg~V~vwd~~~~~~~~~-----~----------~~~~~~~~~~~~h~~~v 184 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNAC--VIATKTPSSDVLVFDYTKHPSKPE-----P----------SGECQPDLRLRGHQKEG 184 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEE--EEEEECSSSCEEEEEGGGSCSSCC-----T----------TCCCCCSEEEECCSSCC
T ss_pred EEEEcCCCcEEEEEECCCCCc--EEEEECCCCcEEEEECCCcccccC-----c----------cccCCCcEEecCCCCCe
Confidence 445679999999999997432 899999999999999975321100 0 00011222334577789
Q ss_pred eEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccc
Q 048801 401 LCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKF 479 (1715)
Q Consensus 401 tslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~ 479 (1715)
.+++|+|++. +|++|+.||.|++|++..+... .........+.+|...|.+++|+|..
T Consensus 185 ~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~h~~~v~~v~~~p~~------------------- 243 (430)
T 2xyi_A 185 YGLSWNPNLNGYLLSASDDHTICLWDINATPKE--HRVIDAKNIFTGHTAVVEDVAWHLLH------------------- 243 (430)
T ss_dssp CCEEECTTSTTEEEEECTTSCEEEEETTSCCBG--GGEEECSEEECCCSSCEEEEEECSSC-------------------
T ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCC--CceeccceeecCCCCCEeeeEEeCCC-------------------
Confidence 9999999998 9999999999999999864210 01122345677899999999999954
Q ss_pred cCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC-
Q 048801 480 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR- 558 (1715)
Q Consensus 480 ~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~- 558 (1715)
...|++++.||.|++||+++... ......+..|...|++++|+|++.
T Consensus 244 ------~~~l~s~~~dg~i~i~d~~~~~~--------------------------~~~~~~~~~~~~~v~~i~~~p~~~~ 291 (430)
T 2xyi_A 244 ------ESLFGSVADDQKLMIWDTRNNNT--------------------------SKPSHTVDAHTAEVNCLSFNPYSEF 291 (430)
T ss_dssp ------TTEEEEEETTSEEEEEETTCSCS--------------------------SSCSEEEECCSSCEEEEEECSSCTT
T ss_pred ------CCEEEEEeCCCeEEEEECCCCCC--------------------------CcceeEeecCCCCeEEEEeCCCCCC
Confidence 37899999999999999986320 123344557888999999999997
Q ss_pred EEEEEecCCeEEEEECCC-CceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC--------------CceE
Q 048801 559 FVLAAIMDCRICVWNAVD-GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE--------------GTPI 623 (1715)
Q Consensus 559 ~LaTgs~DGtI~IWDl~s-g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t--------------gk~l 623 (1715)
+|++|+.||.|+|||+.+ +.++..+.+|...|++++|+|++..+|++++.||.|+|||+.. .+++
T Consensus 292 ~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 371 (430)
T 2xyi_A 292 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 371 (430)
T ss_dssp EEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEE
T ss_pred EEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceE
Confidence 688999999999999998 5678999999999999999997778999999999999999976 3677
Q ss_pred EEEEcccceEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC
Q 048801 624 RIYEIGRFKLVDGKFSPDGT-SIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 624 ~tl~~h~~~V~svafSPDG~-~LAsgs~DG~I~IWdl~tG 662 (1715)
..+.+|...|.+++|+|++. +|++++.||.|.||++..+
T Consensus 372 ~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 372 FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 77778888999999999999 8999999999999999755
No 119
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=5.9e-26 Score=278.36 Aligned_cols=291 Identities=11% Similarity=0.086 Sum_probs=235.2
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEE-----EecCCCCCeEEEEECCCCCEEEEEeCCC
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLA-----SCRGHEGDITDLAVSSNNTLVASASNDF 307 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~-----tL~gHs~~VtsLafSpDg~lLASGS~DG 307 (1715)
.+.+..+..|. .+.+++|+|++.++++++.|+.|++||+.+++.+. .+.+|.+.|.+++|++++.++++++.|+
T Consensus 113 ~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~ 191 (433)
T 3bws_A 113 HRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQAN 191 (433)
T ss_dssp EEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGT
T ss_pred ceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCC
Confidence 35666676665 45699999988888888889999999999999887 4568999999999999999999999999
Q ss_pred eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 308 VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
.|++||+.+++.+..+..|...+.+++|+|++.. .+++++.|+.|++||+.+++.+..+..
T Consensus 192 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~i~~~d~~~~~~~~~~~~----------------- 252 (433)
T 3bws_A 192 AVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDL--VYCSNWISEDISVIDRKTKLEIRKTDK----------------- 252 (433)
T ss_dssp EEEEEETTTCCEEEEEECSSSSEEEEEEETTTTE--EEEEETTTTEEEEEETTTTEEEEECCC-----------------
T ss_pred EEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCE--EEEEecCCCcEEEEECCCCcEEEEecC-----------------
Confidence 9999999999999999999999999999999872 345666899999999988765433211
Q ss_pred CCCCCCCCCCcceeEEEEccCCCeEEEec--------CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccC
Q 048801 388 GPSSSNGLQSHQILCCAYNANGTVFVTGS--------SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGC 459 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafSpdG~~LatGs--------~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspd 459 (1715)
...+.+++|+|+|++|++++ .||.|++||+.+++. +.. ..|...+.+++|+|+
T Consensus 253 ---------~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~---------~~~-~~~~~~~~~~~~~~~ 313 (433)
T 3bws_A 253 ---------IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL---------IDT-IGPPGNKRHIVSGNT 313 (433)
T ss_dssp ---------CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE---------EEE-EEEEECEEEEEECSS
T ss_pred ---------CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE---------Eee-ccCCCCcceEEECCC
Confidence 23489999999999999887 589999999986532 222 244557889999998
Q ss_pred cccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcc
Q 048801 460 AVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQ 539 (1715)
Q Consensus 460 g~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~ 539 (1715)
+ ...+++++.|+.|.+||+.+++...
T Consensus 314 g-------------------------~~l~~~~~~~~~v~v~d~~~~~~~~----------------------------- 339 (433)
T 3bws_A 314 E-------------------------NKIYVSDMCCSKIEVYDLKEKKVQK----------------------------- 339 (433)
T ss_dssp T-------------------------TEEEEEETTTTEEEEEETTTTEEEE-----------------------------
T ss_pred C-------------------------CEEEEEecCCCEEEEEECCCCcEEE-----------------------------
Confidence 6 2466788999999999998644211
Q ss_pred cccCCCCCeeEEEeCCCCCEEEEEec---------------CCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEE
Q 048801 540 RLLPTPRGVNMIVWSLDNRFVLAAIM---------------DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAM 604 (1715)
Q Consensus 540 ~l~~h~~~VtslafSPDG~~LaTgs~---------------DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLa 604 (1715)
...+...+.+++|+|+|++|++++. ||.|++||+.+++.+..+..+ ..+.+++|+| ++.+|+
T Consensus 340 -~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~ 416 (433)
T 3bws_A 340 -SIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSP-DNRYLV 416 (433)
T ss_dssp -EEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECT-TSCEEE
T ss_pred -EecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcC-CCCEEE
Confidence 1124456889999999999988876 579999999999999988864 5789999999 556665
Q ss_pred EEe-CCCcEEEEECCC
Q 048801 605 SAG-YDGRTIVWDIWE 619 (1715)
Q Consensus 605 Sgs-~DGtI~VWDl~t 619 (1715)
+++ .|+.|++|++..
T Consensus 417 ~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 417 ISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEETTTTEEEEEEETT
T ss_pred EEECCCCeEEEEEecC
Confidence 555 599999999853
No 120
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.1e-26 Score=277.80 Aligned_cols=275 Identities=8% Similarity=0.001 Sum_probs=211.5
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCe
Q 048801 251 FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAV 330 (1715)
Q Consensus 251 fSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~V 330 (1715)
+.+++.+|++|+.||.|+|||+.+++.+..+. ...|.+++|+|+ +++|+.|++|++|+...
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~-------------- 104 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN-------------- 104 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTT--------------
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccC--------------
Confidence 44678899999999999999999998888776 567888888888 88999999999998753
Q ss_pred EEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc--C
Q 048801 331 TAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA--N 408 (1715)
Q Consensus 331 tsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp--d 408 (1715)
.+.+|++.+++.+..+.. .|...|.+++|+| +
T Consensus 105 ----------------------~~~~~~~~~~~~~~~~~~------------------------~~~~~v~~~~~~~~~~ 138 (343)
T 3lrv_A 105 ----------------------QITILDSKTNKVLREIEV------------------------DSANEIIYMYGHNEVN 138 (343)
T ss_dssp ----------------------EEEEEETTTCCEEEEEEC------------------------CCSSCEEEEECCC---
T ss_pred ----------------------ceEEeecCCcceeEEeec------------------------CCCCCEEEEEcCCCCC
Confidence 245566655543332211 2345699999999 9
Q ss_pred CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee-cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCc
Q 048801 409 GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL-SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHD 487 (1715)
Q Consensus 409 G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l-~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~ 487 (1715)
+.+|++|+.||.|++||+.+++. +... ..|...|.+++|+|++ .
T Consensus 139 ~~~l~s~s~dg~i~~wd~~~~~~---------~~~~~~~~~~~i~~~~~~pdg--------------------------~ 183 (343)
T 3lrv_A 139 TEYFIWADNRGTIGFQSYEDDSQ---------YIVHSAKSDVEYSSGVLHKDS--------------------------L 183 (343)
T ss_dssp CCEEEEEETTCCEEEEESSSSCE---------EEEECCCSSCCCCEEEECTTS--------------------------C
T ss_pred CCEEEEEeCCCcEEEEECCCCcE---------EEEEecCCCCceEEEEECCCC--------------------------C
Confidence 99999999999999999987532 3333 3455689999999986 7
Q ss_pred eEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccC-CCCCeeEEEeCCCCCEEEEEecC
Q 048801 488 NIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLP-TPRGVNMIVWSLDNRFVLAAIMD 566 (1715)
Q Consensus 488 ~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~-h~~~VtslafSPDG~~LaTgs~D 566 (1715)
+|++|+.||.|++||++++... ...+.. |...|++++|+|+|.+|++++ +
T Consensus 184 ~lasg~~dg~i~iwd~~~~~~~----------------------------~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~ 234 (343)
T 3lrv_A 184 LLALYSPDGILDVYNLSSPDQA----------------------------SSRFPVDEEAKIKEVKFADNGYWMVVEC-D 234 (343)
T ss_dssp EEEEECTTSCEEEEESSCTTSC----------------------------CEECCCCTTSCEEEEEECTTSSEEEEEE-S
T ss_pred EEEEEcCCCEEEEEECCCCCCC----------------------------ccEEeccCCCCEEEEEEeCCCCEEEEEe-C
Confidence 9999999999999999874421 022344 788999999999999999999 5
Q ss_pred CeEEEEECCCCceEEEEec---CCCCeE--EEEEccCCCcEEEEEeC-CCcEEEEECCCCceEEEEEcccceEEEEEEcC
Q 048801 567 CRICVWNAVDGSLVHSLTG---HSASSY--VLDVHPFNPRIAMSAGY-DGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSP 640 (1715)
Q Consensus 567 GtI~IWDl~sg~~l~tL~g---H~~~V~--sLafSP~dg~lLaSgs~-DGtI~VWDl~tgk~l~tl~~h~~~V~svafSP 640 (1715)
+.|+|||+++++.+..+.. |...+. +++|+| ++.+|++++. |+.|+||++..+...... .++..++|++
T Consensus 235 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~ 309 (343)
T 3lrv_A 235 QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQS 309 (343)
T ss_dssp SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC--
T ss_pred CeEEEEEcCCCCcceeecccccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCc
Confidence 5999999999887655543 434443 699999 7788888888 999999999766544333 5678889999
Q ss_pred ---CCCEEEEEeCCCeEEEEEC
Q 048801 641 ---DGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 641 ---DG~~LAsgs~DG~I~IWdl 659 (1715)
++..|++++.||.+.++-.
T Consensus 310 ~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 310 DTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp --CCCCEEEEEEETTEEEEEEE
T ss_pred cccccceeEEEecCCceEEEEe
Confidence 9999999999999998864
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=1.6e-26 Score=282.94 Aligned_cols=264 Identities=13% Similarity=0.098 Sum_probs=174.3
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceE-----EEeCCCCCeEEEEecC--------CCCcceEEEEecCCC
Q 048801 286 GDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS-----VLRGHTGAVTAIAFSP--------RPSAIYQLLSSSDDG 352 (1715)
Q Consensus 286 ~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~-----~L~gH~~~VtsLafSP--------dg~~~~~LaSgS~DG 352 (1715)
..+....+++++.+||+|+.|++|+|||+.++.... .+.+|.+.|++|+|+| ++. +|++++.|+
T Consensus 90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~---~las~s~D~ 166 (393)
T 4gq1_A 90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ---VIASVGDDC 166 (393)
T ss_dssp -------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE---EEEEEETTS
T ss_pred CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC---EEEEEECCC
Confidence 333344445567789999999999999998886533 3578999999999998 444 899999999
Q ss_pred cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCc
Q 048801 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSV 431 (1715)
Q Consensus 353 tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~ 431 (1715)
+|+|||+.++..+..+ ..|...|.+++|+|++ .+|++|+.||.|++||+.+++.
T Consensus 167 tv~~Wd~~~~~~~~~~-------------------------~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~ 221 (393)
T 4gq1_A 167 TLIIWRLTDEGPILAG-------------------------YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLS 221 (393)
T ss_dssp EEEEEEEETTEEEEEE-------------------------EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-
T ss_pred eEEEEECCCCceeeee-------------------------cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcc
Confidence 9999999876543322 2245679999999987 4899999999999999987532
Q ss_pred cCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcc
Q 048801 432 EDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGK 511 (1715)
Q Consensus 432 ~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~ 511 (1715)
... .......+...+....+.+.
T Consensus 222 ~~~-----~~~~~~~~~~~~~s~~~~~~---------------------------------------------------- 244 (393)
T 4gq1_A 222 AEE-----NSQTELVKNPWLLTLNTLPL---------------------------------------------------- 244 (393)
T ss_dssp --------------CSCCCSEEEESGGG----------------------------------------------------
T ss_pred ccc-----ccccCCcccceEEecccccc----------------------------------------------------
Confidence 100 00000111111111111000
Q ss_pred cccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC-CCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCe
Q 048801 512 VGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS-LDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASS 590 (1715)
Q Consensus 512 ~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS-PDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V 590 (1715)
.......+|...|.++.|+ ++|..|++++.|++|++||+..+.....+..|...+
T Consensus 245 ------------------------~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~ 300 (393)
T 4gq1_A 245 ------------------------VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKL 300 (393)
T ss_dssp ------------------------C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------
T ss_pred ------------------------eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCcc
Confidence 0001123456678889986 899999999999999999999888777776665555
Q ss_pred EEEEEc------------------c-CCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCC
Q 048801 591 YVLDVH------------------P-FNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDV 651 (1715)
Q Consensus 591 ~sLafS------------------P-~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~D 651 (1715)
..+.+. | .++.++++|+.||+|+|||+.+++++..+..|..+|.+++|||||++||+++.+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~ 380 (393)
T 4gq1_A 301 GPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEG 380 (393)
T ss_dssp ---CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESS
T ss_pred ccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 444332 2 245577888899999999999999999888899999999999999999999876
Q ss_pred CeEEEEEC
Q 048801 652 GQIYLLNT 659 (1715)
Q Consensus 652 G~I~IWdl 659 (1715)
| +.+|.+
T Consensus 381 G-v~lvrL 387 (393)
T 4gq1_A 381 S-VLLTRL 387 (393)
T ss_dssp E-EEEEEE
T ss_pred C-eEEEEE
Confidence 6 555543
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=1.6e-26 Score=282.92 Aligned_cols=288 Identities=12% Similarity=0.076 Sum_probs=190.5
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEE-----EEecCCCCCeEEEEECC--------CCCEEEEEeC
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCL-----ASCRGHEGDITDLAVSS--------NNTLVASASN 305 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l-----~tL~gHs~~VtsLafSp--------Dg~lLASGS~ 305 (1715)
..+|...+....+++++.+||+|+.|++|+|||+.++... ..+.||.+.|++|+|+| |+++||+|+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence 4456666777777888899999999999999999988653 34689999999999998 8899999999
Q ss_pred CCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCC
Q 048801 306 DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 306 DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
|++|+|||+.++.++..+.+|...|.+++|+|++.. +|++++.||+|++||+.+++......................
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~--~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~ 242 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPN--QLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTL 242 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEE--EEEEEETTSEEEEEETTCCC----------CSCCCSEEEESG
T ss_pred CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCc--eEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccc
Confidence 999999999999888888889999999999998753 799999999999999998775433221110000000000000
Q ss_pred CCCCCCCCCCCCcceeEEEEc-cCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccc
Q 048801 386 NNGPSSSNGLQSHQILCCAYN-ANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASR 464 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafS-pdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~ 464 (1715)
..........|...+.+++|+ ++|..|++++.|+.+++||+..+. ....+..|...+..+.+.++..
T Consensus 243 ~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~---------~~~~l~~~~~~~~~~~~~~~~~--- 310 (393)
T 4gq1_A 243 PLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN---------DYNEISDSTMKLGPKNLLPNVQ--- 310 (393)
T ss_dssp GGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------------CCSCSEE---
T ss_pred cceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC---------CCceEeeecCccccEEEccccc---
Confidence 111122234567789999987 799999999999999999997643 2344556666666665555420
Q ss_pred ccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCC
Q 048801 465 SAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPT 544 (1715)
Q Consensus 465 ~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h 544 (1715)
.+ ..+
T Consensus 311 -----------------------~~----------------------------------------------------~~~ 315 (393)
T 4gq1_A 311 -----------------------GI----------------------------------------------------SLF 315 (393)
T ss_dssp -----------------------EE----------------------------------------------------CSS
T ss_pred -----------------------cc----------------------------------------------------ccc
Confidence 00 000
Q ss_pred CCCeeEEEeCC-CCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 545 PRGVNMIVWSL-DNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 545 ~~~VtslafSP-DG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
...+..+.+.+ ++.++++|+.||.|+|||+.+++++..+.+|..+|++|+|+| ++++||+++.+| +.+|.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp-dG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 316 PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ-DGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT-TSSEEEEEESSE-EEEEEE
T ss_pred CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCC-eEEEEE
Confidence 11122222333 455677888999999999999999999999999999999999 788999998776 666655
No 123
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2e-26 Score=305.84 Aligned_cols=272 Identities=17% Similarity=0.224 Sum_probs=212.8
Q ss_pred EEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC--CCCceEEEeCCCCCeEEEEecCC--CCcceEEEEecCCCc
Q 048801 278 LASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP--DGLPISVLRGHTGAVTAIAFSPR--PSAIYQLLSSSDDGT 353 (1715)
Q Consensus 278 l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~--tg~~l~~L~gH~~~VtsLafSPd--g~~~~~LaSgS~DGt 353 (1715)
+..+.+|.+.|++++|+|++++|++|+.||+|+|||+. ++..+..+.+|.+.|++++|+|+ +. +|++|+.||.
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~---~l~s~s~Dg~ 78 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT---ILASCSYDGK 78 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCS---EEEEEETTSC
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCC---EEEEEeCCCe
Confidence 45678999999999999999999999999999999998 55778889999999999999987 65 8999999999
Q ss_pred EEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC--CCeEEEecCCCeEEEEeCCCCCc
Q 048801 354 CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN--GTVFVTGSSDTFARVWSACKSSV 431 (1715)
Q Consensus 354 VrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd--G~~LatGs~DG~IrVWDl~t~~~ 431 (1715)
|++||+.++....... ...|...|.+++|+|+ +.+|++|+.||.|++||+.++..
T Consensus 79 I~vwd~~~~~~~~~~~-----------------------~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~ 135 (753)
T 3jro_A 79 VLIWKEENGRWSQIAV-----------------------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 135 (753)
T ss_dssp EEEEEEETTEEEEEEE-----------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC
T ss_pred EEEEECCCCccccccc-----------------------ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC
Confidence 9999998765221111 1235677999999999 99999999999999999987532
Q ss_pred cCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcc
Q 048801 432 EDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGK 511 (1715)
Q Consensus 432 ~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~ 511 (1715)
.....+.+|...|.+++|+|........ .....++..|++|+.||.|++||++++....
T Consensus 136 -------~~~~~~~~~~~~v~~l~~~p~~~~~~~~-------------~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~- 194 (753)
T 3jro_A 136 -------TSPIIIDAHAIGVNSASWAPATIEEDGE-------------HNGTKESRKFVTGGADNLVKIWKYNSDAQTY- 194 (753)
T ss_dssp -------CCCEEEECCSSCEEEEEECCCC----------------------CGGGCCEEEEETTSCEEEEEEETTTTEE-
T ss_pred -------cceeEeecCCCceEEEEecCcccccccc-------------cccCCCCCEEEEEECCCeEEEEeccCCcccc-
Confidence 2234567899999999999952100000 0000124789999999999999998642110
Q ss_pred cccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC---CCEEEEEecCCeEEEEECCCCc-----eEEEE
Q 048801 512 VGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD---NRFVLAAIMDCRICVWNAVDGS-----LVHSL 583 (1715)
Q Consensus 512 ~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD---G~~LaTgs~DGtI~IWDl~sg~-----~l~tL 583 (1715)
.....+.+|...|++++|+|+ +.+|++|+.||.|+|||+.++. .+...
T Consensus 195 ------------------------~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~ 250 (753)
T 3jro_A 195 ------------------------VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKE 250 (753)
T ss_dssp ------------------------EEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSS
T ss_pred ------------------------eeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEecc
Confidence 122345678899999999999 9999999999999999998874 33344
Q ss_pred ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 048801 584 TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 584 ~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk 621 (1715)
.+|...|++++|+| ++.+|++|+.||.|+||++.++.
T Consensus 251 ~~~~~~v~~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 251 EKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SCCSSCCCCEEECT-TTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCCCceEEEEEcC-CCCEEEEEcCCCEEEEEecCCCC
Confidence 56889999999999 77888999999999999998543
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=2.2e-24 Score=260.70 Aligned_cols=319 Identities=13% Similarity=0.095 Sum_probs=242.1
Q ss_pred ccccccceeEEEEcCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEE-e
Q 048801 227 STMVQKMQNIKKLRGHRDAVYCAIFDRSGRFV-ITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASA-S 304 (1715)
Q Consensus 227 ~~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~L-aTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASG-S 304 (1715)
.+.....+.+..+.+|.. +.+++|+|+|++| ++++.|+.|++||+.+++.+..+..+. .|.+++|+|++++|+++ +
T Consensus 16 v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~ 93 (391)
T 1l0q_A 16 VIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNM 93 (391)
T ss_dssp EEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEET
T ss_pred EEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEEC
Confidence 344556778888888865 8999999999987 677789999999999999999888665 89999999999987654 5
Q ss_pred CCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCC
Q 048801 305 NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384 (1715)
Q Consensus 305 ~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~ 384 (1715)
.++.|++||+.+++.+..+..| ..+.+++|+|++.. ++++++.++.|++||+.+++....+..
T Consensus 94 ~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~--l~~~~~~~~~v~~~d~~~~~~~~~~~~-------------- 156 (391)
T 1l0q_A 94 ASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKK--LYVTNNGDKTVSVINTVTKAVINTVSV-------------- 156 (391)
T ss_dssp TTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSE--EEEEETTTTEEEEEETTTTEEEEEEEC--------------
T ss_pred CCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCE--EEEEeCCCCEEEEEECCCCcEEEEEec--------------
Confidence 6799999999999988888754 57899999999872 347888899999999988876544321
Q ss_pred CCCCCCCCCCCCCcceeEEEEccCCCeE-EEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccc
Q 048801 385 SNNGPSSSNGLQSHQILCCAYNANGTVF-VTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVAS 463 (1715)
Q Consensus 385 ~~~~~~~~~~~h~~~VtslafSpdG~~L-atGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as 463 (1715)
...+.+++|+|+|+.| ++++.++.|++||+.+++ .+..+. +...+.+++|+|++
T Consensus 157 ------------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~---------~~~~~~-~~~~~~~~~~~~~g--- 211 (391)
T 1l0q_A 157 ------------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS---------VIDTVK-VEAAPSGIAVNPEG--- 211 (391)
T ss_dssp ------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE---------EEEEEE-CSSEEEEEEECTTS---
T ss_pred ------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe---------EEEEEe-cCCCccceEECCCC---
Confidence 2346899999999877 677889999999998743 233333 45678999999986
Q ss_pred cccccccccccccccccCCcccCceEEEEc---CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc
Q 048801 464 RSAMSDAFKEENVPKFKNSWFCHDNIVTCS---RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR 540 (1715)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS---~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 540 (1715)
..|++++ .++.|.+||+.+++... .
T Consensus 212 -----------------------~~l~~~~~~~~~~~v~~~d~~~~~~~~-----------------------------~ 239 (391)
T 1l0q_A 212 -----------------------TKAYVTNVDKYFNTVSMIDTGTNKITA-----------------------------R 239 (391)
T ss_dssp -----------------------SEEEEEEECSSCCEEEEEETTTTEEEE-----------------------------E
T ss_pred -----------------------CEEEEEecCcCCCcEEEEECCCCeEEE-----------------------------E
Confidence 5677666 79999999998643211 1
Q ss_pred ccCCCCCeeEEEeCCCCCEE-EEEecCCeEEEEECCCCceEEEEecCCCCeE---EEE------------EccCC-----
Q 048801 541 LLPTPRGVNMIVWSLDNRFV-LAAIMDCRICVWNAVDGSLVHSLTGHSASSY---VLD------------VHPFN----- 599 (1715)
Q Consensus 541 l~~h~~~VtslafSPDG~~L-aTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~---sLa------------fSP~d----- 599 (1715)
+.. ...+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..|..+.. .+. |+...
T Consensus 240 ~~~-~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~ 318 (391)
T 1l0q_A 240 IPV-GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYI 318 (391)
T ss_dssp EEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEE
T ss_pred Eec-CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccc
Confidence 122 2357889999999987 5668899999999999999999887655421 122 22210
Q ss_pred ----CcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEE
Q 048801 600 ----PRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLS 648 (1715)
Q Consensus 600 ----g~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsg 648 (1715)
...+...+.|..+++|++.+|... .+..+ ...|+++|.+.++.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~W~~~~g~~~----~~~~~--~~~~~~~g~y~~~~ 365 (391)
T 1l0q_A 319 FLSEPVQFTDLSKDATEWKWDFGDGSSS----KKQNP--THTYSETGIYTVRL 365 (391)
T ss_dssp ETTCCEEEEECCBSCSEEEEECSSSCEE----CSSSC--EECCSSCEEEEEEE
T ss_pred cccceEEEEeCCCCceEEEEECCCCccc----CcCCC--eEEeCCCceEEEEE
Confidence 134556667889999999888642 22223 35799999988743
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=9e-25 Score=279.38 Aligned_cols=348 Identities=10% Similarity=0.066 Sum_probs=263.7
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEEC--CCCCceEEEeCCCC
Q 048801 251 FDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRL--PDGLPISVLRGHTG 328 (1715)
Q Consensus 251 fSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl--~tg~~l~~L~gH~~ 328 (1715)
|+|++.++++++.|++|.+||..+++++.++..+.. +.+++|+|||++|++++.|++|.+||+ .+++.+..+. +..
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~ 222 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGI 222 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCS
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCC
Confidence 789999999999999999999999999999984333 899999999999999999999999999 8888888888 456
Q ss_pred CeEEEEecC----CCCcceEEEEec-CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCC-CcceeE
Q 048801 329 AVTAIAFSP----RPSAIYQLLSSS-DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ-SHQILC 402 (1715)
Q Consensus 329 ~VtsLafSP----dg~~~~~LaSgS-~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h-~~~Vts 402 (1715)
.+..++|+| +++ +|++++ .+++|.+||..+++.+..+...... . .....| ...+.+
T Consensus 223 ~p~~va~sp~~~~dg~---~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~--~-------------~~~~~~~~~~v~~ 284 (543)
T 1nir_A 223 EARSVESSKFKGYEDR---YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT--V-------------DTQTYHPEPRVAA 284 (543)
T ss_dssp EEEEEEECCSTTCTTT---EEEEEEEESSEEEEEETTTCCEEEEEECCEEC--S-------------SSCCEESCCCEEE
T ss_pred CcceEEeCCCcCCCCC---EEEEEEccCCeEEEEeccccccceeecccCcc--c-------------CccccccCCceEE
Confidence 689999999 988 677776 5899999999988877665431100 0 000011 236889
Q ss_pred EEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccC
Q 048801 403 CAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKN 481 (1715)
Q Consensus 403 lafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~ 481 (1715)
+.++|++. ++++...++.|.+||+.+.+. .. +..+ .+...+..++|+|++
T Consensus 285 i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~------l~-~~~i-~~~~~~~~~~~spdg--------------------- 335 (543)
T 1nir_A 285 IIASHEHPEFIVNVKETGKVLLVNYKDIDN------LT-VTSI-GAAPFLHDGGWDSSH--------------------- 335 (543)
T ss_dssp EEECSSSSEEEEEETTTTEEEEEECTTSSS------CE-EEEE-ECCSSCCCEEECTTS---------------------
T ss_pred EEECCCCCEEEEEECCCCeEEEEEecCCCc------ce-eEEe-ccCcCccCceECCCC---------------------
Confidence 99999765 566777889999999976432 11 1222 345678889999987
Q ss_pred CcccCce-EEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC-CCE
Q 048801 482 SWFCHDN-IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD-NRF 559 (1715)
Q Consensus 482 s~~~~~~-LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD-G~~ 559 (1715)
++ ++++..+++|.+||+.++++...+.. ....|.+....+ ++|+ |.+
T Consensus 336 -----~~l~va~~~~~~v~v~D~~tg~l~~~i~~-------------------------g~~ph~g~g~~~-~~p~~g~~ 384 (543)
T 1nir_A 336 -----RYFMTAANNSNKVAVIDSKDRRLSALVDV-------------------------GKTPHPGRGANF-VHPKYGPV 384 (543)
T ss_dssp -----CEEEEEEGGGTEEEEEETTTTEEEEEEEC-------------------------SSSBCCTTCEEE-EETTTEEE
T ss_pred -----CEEEEEecCCCeEEEEECCCCeEEEeecc-------------------------CCCCCCCCCccc-CCCCCccE
Confidence 44 45666799999999998654322100 001233322233 4677 666
Q ss_pred EEEEe-cCCeEEEEECCC-------CceEEEEecCCCCeEEEEEccCCCcEEEEEe-------CCCcEEEEECCCCceE-
Q 048801 560 VLAAI-MDCRICVWNAVD-------GSLVHSLTGHSASSYVLDVHPFNPRIAMSAG-------YDGRTIVWDIWEGTPI- 623 (1715)
Q Consensus 560 LaTgs-~DGtI~IWDl~s-------g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs-------~DGtI~VWDl~tgk~l- 623 (1715)
++++. .|++|.|||+.+ +++++++.+|.+.+..|+||| +++.|++++ .+++|.|||+.+++.+
T Consensus 385 ~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~ 463 (543)
T 1nir_A 385 WSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKY 463 (543)
T ss_dssp EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCCEEEECCTTCSSHHHHTCEEEEETTCTTSCC
T ss_pred EEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecCCCCCcccCceEEEEECCCCCCCe
Confidence 66665 589999999998 899999999999999999999 667777765 2779999999999887
Q ss_pred EEEE--------cccceEEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCccccccccceeecCCCc
Q 048801 624 RIYE--------IGRFKLVDGKFSPDGTSIVLSD-----DVGQIYLLNTGQGESQKDAKYDQFFLGDYR 679 (1715)
Q Consensus 624 ~tl~--------~h~~~V~svafSPDG~~LAsgs-----~DG~I~IWdl~tGe~~k~~~~~~~fs~D~r 679 (1715)
..+. .+...+..+.|+|||+.|+++. .++.|.|||..++++++..+......|+|.
T Consensus 464 ~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~~~~~p~g~ 532 (543)
T 1nir_A 464 QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTGK 532 (543)
T ss_dssp EEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTTCCSEEEE
T ss_pred EEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCCCccCCCee
Confidence 5552 3456799999999999999763 479999999999998876665444555554
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=1.5e-24 Score=257.50 Aligned_cols=294 Identities=14% Similarity=0.140 Sum_probs=214.0
Q ss_pred cceeEEEEcCCCCC----eEEEEEcCCCC---EEEEEeCCCcEEEEeCCCC---cEEEEecCCCCCeEEEEECCCCCEEE
Q 048801 232 KMQNIKKLRGHRDA----VYCAIFDRSGR---FVITGSDDRLVKIWSMETA---FCLASCRGHEGDITDLAVSSNNTLVA 301 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~----Vt~VafSpDG~---~LaTGS~DGtIrIWDl~tg---k~l~tL~gHs~~VtsLafSpDg~lLA 301 (1715)
.++.+..|+.-.+. |.++-|-..|- .|++++. ..|++|+..++ +.++++.+|..+|..|+|.||-.-|+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 102 (356)
T 2w18_A 24 NLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLV 102 (356)
T ss_dssp CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCE
T ss_pred eeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCccccee
Confidence 35666677655543 45555554443 5777775 69999999999 89999999999999999999865444
Q ss_pred EEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCC----CCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCc
Q 048801 302 SASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPR----PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAI 377 (1715)
Q Consensus 302 SGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPd----g~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i 377 (1715)
+..- |. -+...|.+|+|+|+ +. .+++++.+ +.+|++.
T Consensus 103 ~~~~-----------~~------~~~~~v~sla~spd~~~~~~---~l~s~g~~--~~v~~l~----------------- 143 (356)
T 2w18_A 103 CVAL-----------GN------LEIREIRALFCSSDDESEKQ---VLLKSGNI--KAVLGLT----------------- 143 (356)
T ss_dssp EEEE-----------CS------SSEEEEEEECC------CCE---EEEEEEEE--EEEEEET-----------------
T ss_pred eeee-----------cc------ccccceEEEEECCCcccccc---EEEeCCCe--EEEEecC-----------------
Confidence 3321 11 14567899999999 55 67777743 7778653
Q ss_pred cCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec--CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEE
Q 048801 378 TGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS--SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQ 455 (1715)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs--~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLa 455 (1715)
+|+++.+++ .|+.|++|++... .+.+..+.+|...+..++
T Consensus 144 ------------------------------~g~lv~ss~~g~d~~V~~~~~s~d--------G~~~~s~~~~~~~v~~l~ 185 (356)
T 2w18_A 144 ------------------------------KRRLVSSSGTLSDQQVEVMTFAED--------GGGKENQFLMPPEETILT 185 (356)
T ss_dssp ------------------------------TTEEEEEESSSTTCEEEEEEECTT--------SCEEEEEEECCCSSCEEE
T ss_pred ------------------------------CCcEEEecccCCCCcEEEEEECCC--------CceeeeeccCCCceeeEE
Confidence 344455533 5888888888431 234566778999999999
Q ss_pred Ecc-CcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCC
Q 048801 456 FSG-CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534 (1715)
Q Consensus 456 fsp-dg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 534 (1715)
|++ ++. +..|++++.|++|+|||+.+++.+..
T Consensus 186 fs~~~g~------------------------~~~LaSgS~D~TIkIWDl~TGk~l~t----------------------- 218 (356)
T 2w18_A 186 FAEVQGM------------------------QEALLGTTIMNNIVIWNLKTGQLLKK----------------------- 218 (356)
T ss_dssp EEEEETS------------------------TTEEEEEETTSEEEEEETTTCCEEEE-----------------------
T ss_pred eeccCCC------------------------CceEEEecCCCcEEEEECCCCcEEEE-----------------------
Confidence 998 221 37999999999999999998664332
Q ss_pred CCCcccccCC---CCCeeEEEeCCCCCEE------------EEEecCCeEEEEECCCCceEEEE-----ecCCCCeEEEE
Q 048801 535 GGPRQRLLPT---PRGVNMIVWSLDNRFV------------LAAIMDCRICVWNAVDGSLVHSL-----TGHSASSYVLD 594 (1715)
Q Consensus 535 g~~~~~l~~h---~~~VtslafSPDG~~L------------aTgs~DGtI~IWDl~sg~~l~tL-----~gH~~~V~sLa 594 (1715)
+.+| ...+.+++|+|+|.++ ++|+.|++|++||..+++.+..+ .+|...+.+..
T Consensus 219 ------L~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~ 292 (356)
T 2w18_A 219 ------MHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGD 292 (356)
T ss_dssp ------EECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEE
T ss_pred ------EcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccc
Confidence 2221 2367888999999886 56788999999999999988776 37776655444
Q ss_pred EccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEE-EEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 595 VHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLV-DGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 595 fSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~-svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
+ ++.++++|+.||+|+|||+.+|+++.++.+|...+. .++|||||++||+|+.|++|+|||+
T Consensus 293 ~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 293 V---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp E---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred c---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 4 367899999999999999999999999998877665 5899999999999999999999985
No 127
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=5.8e-24 Score=292.04 Aligned_cols=350 Identities=12% Similarity=0.047 Sum_probs=268.0
Q ss_pred eEEEEcCCCCCeEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCcEEEEecCCCCCe-------EEEEECCCCCEEE
Q 048801 235 NIKKLRGHRDAVYCAIFDRSGRFVITGSDD------RLVKIWSMETAFCLASCRGHEGDI-------TDLAVSSNNTLVA 301 (1715)
Q Consensus 235 ~l~~L~GH~~~Vt~VafSpDG~~LaTGS~D------GtIrIWDl~tgk~l~tL~gHs~~V-------tsLafSpDg~lLA 301 (1715)
....|.+|...|.+++|||||++||+++.+ ..|++|++.+++ ...+..|...+ .+++|+|||++++
T Consensus 44 ~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~ 122 (1045)
T 1k32_A 44 STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLII 122 (1045)
T ss_dssp CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEE
T ss_pred cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEE
Confidence 356788999999999999999999988643 479999998876 57788899888 9999999999778
Q ss_pred EEeCC------CeeEEEECCCCCce-------------------------------------------------EEEeCC
Q 048801 302 SASND------FVIRVWRLPDGLPI-------------------------------------------------SVLRGH 326 (1715)
Q Consensus 302 SGS~D------GtIrVWDl~tg~~l-------------------------------------------------~~L~gH 326 (1715)
+++.+ ..|.+|++.++... ..+.+|
T Consensus 123 ~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~ 202 (1045)
T 1k32_A 123 STDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM 202 (1045)
T ss_dssp EECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC
T ss_pred EECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCC
Confidence 87754 35777777554321 223457
Q ss_pred CCCeEEEEecCCCCcceEEEEecCCCcEEEEecCC-CCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEE
Q 048801 327 TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY-SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAY 405 (1715)
Q Consensus 327 ~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~t-g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtslaf 405 (1715)
...+.++.|+++ . ++++++.|+.+.||.+.. +.....+ .. ...+.+++|
T Consensus 203 ~~~v~~~~~s~d-~---l~~~~~~dg~~~l~~~~~~g~~~~~l-------------------------~~-~~~~~~~~~ 252 (1045)
T 1k32_A 203 STHVSSPVIVGH-R---IYFITDIDGFGQIYSTDLDGKDLRKH-------------------------TS-FTDYYPRHL 252 (1045)
T ss_dssp SSCCEEEEEETT-E---EEEEECTTSSCEEEEEETTSCSCEEC-------------------------CC-CCSSCEEEE
T ss_pred CCcccceEEeCC-E---EEEEEeccCceEEEEEeCCCCcceEe-------------------------cC-CCCcceeeE
Confidence 777888888877 3 677778889999997653 2111111 00 113567799
Q ss_pred ccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecC-----------CCCCeeEEEEc-cCcccccccccccccc
Q 048801 406 NANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSG-----------HENDVNYVQFS-GCAVASRSAMSDAFKE 473 (1715)
Q Consensus 406 SpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~g-----------H~~~V~sLafs-pdg~as~~~~~~~~~~ 473 (1715)
+|+|+.|+++ .++.|.+|++.... +..+.+ |...+.+++|+ |++
T Consensus 253 SpDG~~la~~-~~~~i~~~d~~~~~----------l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG------------- 308 (1045)
T 1k32_A 253 NTDGRRILFS-KGGSIYIFNPDTEK----------IEKIEIGDLESPEDRIISIPSKFAEDFSPLDG------------- 308 (1045)
T ss_dssp EESSSCEEEE-ETTEEEEECTTTCC----------EEECCCCCCCBCCSEEEECGGGGEEEEEECGG-------------
T ss_pred cCCCCEEEEE-eCCEEEEecCCceE----------eeeeccCcccccccccccccccceeeecCCCC-------------
Confidence 9999999888 48999999984322 112222 44578999999 987
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCC-CeeEEE
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPR-GVNMIV 552 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~-~Vtsla 552 (1715)
..|++++ ++.|.+|++.++. ...+..+.. .+..++
T Consensus 309 -------------~~la~~~-~~~i~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~ 344 (1045)
T 1k32_A 309 -------------DLIAFVS-RGQAFIQDVSGTY------------------------------VLKVPEPLRIRYVRRG 344 (1045)
T ss_dssp -------------GCEEEEE-TTEEEEECTTSSB------------------------------EEECSCCSCEEEEEEC
T ss_pred -------------CEEEEEE-cCEEEEEcCCCCc------------------------------eEEccCCCcceEEeee
Confidence 5677776 8899999887532 112334455 789999
Q ss_pred eCCCCCEEEEEecCCeEE-EEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccc
Q 048801 553 WSLDNRFVLAAIMDCRIC-VWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRF 631 (1715)
Q Consensus 553 fSPDG~~LaTgs~DGtI~-IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~ 631 (1715)
|+ ||+.|++++.++.|. +|++.+++.. .+.+|...+..++|+| ++++|++++.++.|++||+.+++....+..|..
T Consensus 345 ~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~ 421 (1045)
T 1k32_A 345 GD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREA 421 (1045)
T ss_dssp SS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSS
T ss_pred Ec-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCC
Confidence 99 999999999888999 9999877654 4448888999999999 778888999999999999999999888877888
Q ss_pred eEEEEEEcCCCCEEEEEeCCC----------eEEEEECCCCccccc-----cccceeecCCCccEEEcCC
Q 048801 632 KLVDGKFSPDGTSIVLSDDVG----------QIYLLNTGQGESQKD-----AKYDQFFLGDYRPLIRDSL 686 (1715)
Q Consensus 632 ~V~svafSPDG~~LAsgs~DG----------~I~IWdl~tGe~~k~-----~~~~~~fs~D~r~L~~d~~ 686 (1715)
.+.+++|||||++||+++.++ .|++||+.+++.... ......|++|++.|++...
T Consensus 422 ~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 422 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEec
Confidence 899999999999999887644 999999998874321 1234579999999887543
No 128
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=7.3e-24 Score=279.16 Aligned_cols=345 Identities=11% Similarity=-0.014 Sum_probs=246.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CC-----cEEEEeCCCCcEEEEecCCCCC------------------------eEEEE
Q 048801 243 RDAVYCAIFDRSGRFVITGSD-DR-----LVKIWSMETAFCLASCRGHEGD------------------------ITDLA 292 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~-DG-----tIrIWDl~tgk~l~tL~gHs~~------------------------VtsLa 292 (1715)
...|.+++|+|||++|++++. |+ .|++||+.+++....+..+... |.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456899999999999999998 88 9999999999888777655433 88999
Q ss_pred ECCCCCEEEEEeCCCeeEEEECCCCC--ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecC
Q 048801 293 VSSNNTLVASASNDFVIRVWRLPDGL--PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYL 370 (1715)
Q Consensus 293 fSpDg~lLASGS~DGtIrVWDl~tg~--~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~ 370 (1715)
|||||++|++++. +.|++||+.++. .+..+..|...+.+++|+|+++ +|++++ ++.|++||+.+++.......
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~---~la~~~-~~~i~~~d~~~g~~~~~~~~ 190 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGG---FVSFIR-GRNLWVIDLASGRQMQLTAD 190 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSS---EEEEEE-TTEEEEEETTTTEEEECCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCC---EEEEEe-CCcEEEEecCCCCEEEeccC
Confidence 9999999999987 899999999883 4556777888999999999998 677776 46899999987764322110
Q ss_pred CCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC-------------------------------
Q 048801 371 PKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT------------------------------- 419 (1715)
Q Consensus 371 ~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG------------------------------- 419 (1715)
.......|. ...........+.+++|+|||++|++++.|+
T Consensus 191 -~~~~~~~g~--------~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 191 -GSTTIGNGI--------AEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp -CCSSEEESC--------CCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred -Cccceeccc--------cceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 000000000 0000000011257899999999999987665
Q ss_pred --eEEEEeCCC-CCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEc---
Q 048801 420 --FARVWSACK-SSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS--- 493 (1715)
Q Consensus 420 --~IrVWDl~t-~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS--- 493 (1715)
.|.+||+.+ ++. ..+.....|...+..++| |++ +.|++++
T Consensus 262 ~~~l~~~d~~~~~~~-------~~~~~~~~~~~~~~~~~~-pDg--------------------------~~l~~~~~~~ 307 (741)
T 2ecf_A 262 QVKLGVISPAEQAQT-------QWIDLGKEQDIYLARVNW-RDP--------------------------QHLSFQRQSR 307 (741)
T ss_dssp EEEEEEECSSTTCCC-------EEECCCSCSSEEEEEEEE-EET--------------------------TEEEEEEEET
T ss_pred eeEEEEEECCCCCce-------EEecCCCCcceEEEEEEe-CCC--------------------------CEEEEEEecc
Confidence 788899876 542 111111247778999999 987 5666544
Q ss_pred --CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEE
Q 048801 494 --RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICV 571 (1715)
Q Consensus 494 --~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~I 571 (1715)
.++.|.+||+.+++........ .......+..++|+|||+++++++.+|.+.|
T Consensus 308 ~~~~~~i~~~d~~~g~~~~~~~~~-------------------------~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l 362 (741)
T 2ecf_A 308 DQKKLDLVEVTLASNQQRVLAHET-------------------------SPTWVPLHNSLRFLDDGSILWSSERTGFQHL 362 (741)
T ss_dssp TSSEEEEEEEETTTCCEEEEEEEE-------------------------CSSCCCCCSCCEECTTSCEEEEECTTSSCEE
T ss_pred cCCeEEEEEEECCCCceEEEEEcC-------------------------CCCcCCcCCceEECCCCeEEEEecCCCccEE
Confidence 3678999999875422111000 0000013457899999999999999998888
Q ss_pred EECC-CCceEEEEecCCCCeEEE-EEccCCCcEEEEEeCCC--cEEEEECCC-CceEEEEEcccceEEEEEEcCCCCEEE
Q 048801 572 WNAV-DGSLVHSLTGHSASSYVL-DVHPFNPRIAMSAGYDG--RTIVWDIWE-GTPIRIYEIGRFKLVDGKFSPDGTSIV 646 (1715)
Q Consensus 572 WDl~-sg~~l~tL~gH~~~V~sL-afSP~dg~lLaSgs~DG--tI~VWDl~t-gk~l~tl~~h~~~V~svafSPDG~~LA 646 (1715)
|.+. ++. ...+..|...|..+ .|+|++..++++++.++ .++||++.. +..+..+.. ...+..++|||||++|+
T Consensus 363 ~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~ 440 (741)
T 2ecf_A 363 YRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYV 440 (741)
T ss_dssp EEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEE
T ss_pred EEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEE
Confidence 8765 455 78888888888887 59996656667777776 899999864 666666664 55688999999999998
Q ss_pred EEeCC----CeEEEEECCCC
Q 048801 647 LSDDV----GQIYLLNTGQG 662 (1715)
Q Consensus 647 sgs~D----G~I~IWdl~tG 662 (1715)
+...+ +.+++|+...+
T Consensus 441 ~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 441 DSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp EEEEETTEEEEEEEEETTSC
T ss_pred EEecCCCCCCeEEEEEcCCC
Confidence 76443 57899987544
No 129
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.1e-24 Score=258.17 Aligned_cols=242 Identities=10% Similarity=0.061 Sum_probs=192.2
Q ss_pred EECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCC
Q 048801 292 AVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLP 371 (1715)
Q Consensus 292 afSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~ 371 (1715)
.+.+++.+|++|+.||+|+|||+.+++.+..+. ...|.++.|+|. +++++.|++|++|+..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~------~~s~s~D~~i~~w~~~----------- 103 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA------IISRGPCNRLLLLYPG----------- 103 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS------EEEECSTTEEEEEETT-----------
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc------eEEecCCCeEEEEEcc-----------
Confidence 345678899999999999999999999888886 466778888885 7899999999999853
Q ss_pred CCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCe
Q 048801 372 KPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDV 451 (1715)
Q Consensus 372 ~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V 451 (1715)
+.+.+|++.++.. ......+|...|
T Consensus 104 -----------------------------------------------~~~~~~~~~~~~~--------~~~~~~~~~~~v 128 (343)
T 3lrv_A 104 -----------------------------------------------NQITILDSKTNKV--------LREIEVDSANEI 128 (343)
T ss_dssp -----------------------------------------------TEEEEEETTTCCE--------EEEEECCCSSCE
T ss_pred -----------------------------------------------CceEEeecCCcce--------eEEeecCCCCCE
Confidence 1456677765421 112233677899
Q ss_pred eEEEEcc--CcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCC
Q 048801 452 NYVQFSG--CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLP 529 (1715)
Q Consensus 452 ~sLafsp--dg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~ 529 (1715)
.+++|+| ++ .+|++++.||+|++||+.+++....
T Consensus 129 ~~~~~~~~~~~--------------------------~~l~s~s~dg~i~~wd~~~~~~~~~------------------ 164 (343)
T 3lrv_A 129 IYMYGHNEVNT--------------------------EYFIWADNRGTIGFQSYEDDSQYIV------------------ 164 (343)
T ss_dssp EEEECCC---C--------------------------CEEEEEETTCCEEEEESSSSCEEEE------------------
T ss_pred EEEEcCCCCCC--------------------------CEEEEEeCCCcEEEEECCCCcEEEE------------------
Confidence 9999999 65 7999999999999999987542110
Q ss_pred CCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceE-EEEec-CCCCeEEEEEccCCCcEEEEEe
Q 048801 530 PQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLV-HSLTG-HSASSYVLDVHPFNPRIAMSAG 607 (1715)
Q Consensus 530 ~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l-~tL~g-H~~~V~sLafSP~dg~lLaSgs 607 (1715)
....+...|++++|+|+|.+|++|+.||.|+|||+.+++.+ ..+.+ |.+.|++++|+| ++.+|++++
T Consensus 165 ----------~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~-~g~~l~s~~ 233 (343)
T 3lrv_A 165 ----------HSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFAD-NGYWMVVEC 233 (343)
T ss_dssp ----------ECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECT-TSSEEEEEE
T ss_pred ----------EecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeC-CCCEEEEEe
Confidence 01224456999999999999999999999999999999988 88888 999999999999 778888988
Q ss_pred CCCcEEEEECCCCceEEEEEc---ccceE--EEEEEcCCCCEEEEEeC-CCeEEEEECCCCc
Q 048801 608 YDGRTIVWDIWEGTPIRIYEI---GRFKL--VDGKFSPDGTSIVLSDD-VGQIYLLNTGQGE 663 (1715)
Q Consensus 608 ~DGtI~VWDl~tgk~l~tl~~---h~~~V--~svafSPDG~~LAsgs~-DG~I~IWdl~tGe 663 (1715)
|+.|+|||+.+++++..+.. +...+ .+++|+|+|++|++++. |+.|+||++..+.
T Consensus 234 -~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 234 -DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp -SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred -CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 55999999999877655442 22333 36999999999999988 9999999996653
No 130
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=1e-22 Score=279.81 Aligned_cols=378 Identities=10% Similarity=-0.004 Sum_probs=273.0
Q ss_pred CCCCceeeeeeccccCcccccCCCCcccccccccccCccccccceeEEEEcCCCCCe-------EEEEEcCCCCEEEEEe
Q 048801 190 MQADQVHGLSLREIGGGFKKHHRAPSVCSACYAIAKPSTMVQKMQNIKKLRGHRDAV-------YCAIFDRSGRFVITGS 262 (1715)
Q Consensus 190 ~~~d~V~~ls~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~k~l~~L~GH~~~V-------t~VafSpDG~~LaTGS 262 (1715)
.+...+..+.|++.|..++........ ........+..... ....|.+|...+ .+++|+|||+++++++
T Consensus 50 ~~~~~v~~~~~SPDG~~la~~s~~~~~---~~~~~i~~~d~~~g-~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~ 125 (1045)
T 1k32_A 50 SNLGVINNARFFPDGRKIAIRVMRGSS---LNTADLYFYNGENG-EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 125 (1045)
T ss_dssp CSSSEEEEEEECTTSSEEEEEEEESTT---CCEEEEEEEETTTT-EEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred eCCCcccCeEECCCCCEEEEEEeeccC---CCCCeEEEEECCCC-CeEEcccCCCcccccccccccccCCCCCEEEEEEC
Confidence 345678888898888766543221000 00001111122222 367889999988 9999999999888887
Q ss_pred CC------CcEEEEeCCCCcEE-------------------------------------------------EEecCCCCC
Q 048801 263 DD------RLVKIWSMETAFCL-------------------------------------------------ASCRGHEGD 287 (1715)
Q Consensus 263 ~D------GtIrIWDl~tgk~l-------------------------------------------------~tL~gHs~~ 287 (1715)
.+ ..|.+|++.++... ..+.+|...
T Consensus 126 ~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~ 205 (1045)
T 1k32_A 126 AMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTH 205 (1045)
T ss_dssp TTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSC
T ss_pred CcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCc
Confidence 54 35777877655422 233567788
Q ss_pred eEEEEECCCCCEEEEEeCCCeeEEEECCC-CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcc
Q 048801 288 ITDLAVSSNNTLVASASNDFVIRVWRLPD-GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSP 366 (1715)
Q Consensus 288 VtsLafSpDg~lLASGS~DGtIrVWDl~t-g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~ 366 (1715)
+.+++|+++ .++++++.|+.+.||.+.. +.....+..|. .+..++|+|++. .|+++ .++.|.+|++.... +.
T Consensus 206 v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~---~la~~-~~~~i~~~d~~~~~-l~ 278 (1045)
T 1k32_A 206 VSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGR---RILFS-KGGSIYIFNPDTEK-IE 278 (1045)
T ss_dssp CEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSS---CEEEE-ETTEEEEECTTTCC-EE
T ss_pred ccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCC---EEEEE-eCCEEEEecCCceE-ee
Confidence 899999988 6777888889999998753 55566676665 467789999997 56665 48999999984332 21
Q ss_pred eecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEc-cCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeec
Q 048801 367 RIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYN-ANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS 445 (1715)
Q Consensus 367 ~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafS-pdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~ 445 (1715)
.+.... .........+...+.+++|+ |+|+.|++++ ++.|.+|++.++. ...+.
T Consensus 279 ~l~~~~--------------~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~----------~~~~~ 333 (1045)
T 1k32_A 279 KIEIGD--------------LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY----------VLKVP 333 (1045)
T ss_dssp ECCCCC--------------CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB----------EEECS
T ss_pred eeccCc--------------ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc----------eEEcc
Confidence 211100 00001112244568999999 9999999887 7899999987542 23355
Q ss_pred CCCC-CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEE-EEecCCCccCcccccccccccccC
Q 048801 446 GHEN-DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAI-IWIPRSRRSHGKVGRWTRAYHLKV 523 (1715)
Q Consensus 446 gH~~-~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIr-IWDl~t~~~~~~~~~~~~~~~l~~ 523 (1715)
.|.. .+..++|+ ++ ..|++++.++.+. +|++.++.
T Consensus 334 ~~~~~~~~~~~~s-dg--------------------------~~l~~~s~~~~l~~~~d~~~~~---------------- 370 (1045)
T 1k32_A 334 EPLRIRYVRRGGD-TK--------------------------VAFIHGTREGDFLGIYDYRTGK---------------- 370 (1045)
T ss_dssp CCSCEEEEEECSS-SE--------------------------EEEEEEETTEEEEEEEETTTCC----------------
T ss_pred CCCcceEEeeeEc-CC--------------------------CeEEEEECCCceEEEEECCCCC----------------
Confidence 6766 88899998 76 6788888888888 88887532
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEE
Q 048801 524 PPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIA 603 (1715)
Q Consensus 524 ~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lL 603 (1715)
...+..+...+..++|||||++|++++.++.|++||+.+++....+.+|.+.+.+++|+| ++++|
T Consensus 371 --------------~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~l 435 (1045)
T 1k32_A 371 --------------AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFI 435 (1045)
T ss_dssp --------------EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEE
T ss_pred --------------ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECC-CCCeE
Confidence 112224566789999999999999999999999999999999888889999999999999 66666
Q ss_pred EEEeCC----------CcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 604 MSAGYD----------GRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 604 aSgs~D----------GtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
++++.+ +.|++||+.+++ +..+..+...+..++|+|||++|++++.++...+|+....
T Consensus 436 a~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~ 503 (1045)
T 1k32_A 436 AYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 503 (1045)
T ss_dssp EEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred EEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcc
Confidence 666554 489999999887 6666667778889999999999999999888888876543
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=2.5e-23 Score=256.90 Aligned_cols=300 Identities=14% Similarity=0.063 Sum_probs=230.7
Q ss_pred CCeEEEEEcCCCC-EEEEEe----CCC----cEEEEeC--CCCcEE--EEecCCCCCeEEEEECC--------------C
Q 048801 244 DAVYCAIFDRSGR-FVITGS----DDR----LVKIWSM--ETAFCL--ASCRGHEGDITDLAVSS--------------N 296 (1715)
Q Consensus 244 ~~Vt~VafSpDG~-~LaTGS----~DG----tIrIWDl--~tgk~l--~tL~gHs~~VtsLafSp--------------D 296 (1715)
..|...+|.+.|. ++++|+ .|| .|+|||+ .+++++ ..+.+|...+..+++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 4566777877774 666876 467 8999999 999887 55889998888888765 2
Q ss_pred CCEEEEEeCC------CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCC---cEEEEecCCCCCcce
Q 048801 297 NTLVASASND------FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG---TCRIWDARYSQYSPR 367 (1715)
Q Consensus 297 g~lLASGS~D------GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DG---tVrIWDl~tg~~l~~ 367 (1715)
+..|+.++.+ +.|++||+. +.....+.+|...|.+++|+|++. +|++++.++ .|++||+.+++....
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~---~la~~s~~~~~~~i~~~d~~tg~~~~l 218 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGS---KLAYVTFESGRSALVIQTLANGAVRQV 218 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSS---EEEEEECTTSSCEEEEEETTTCCEEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCC---EEEEEEecCCCcEEEEEECCCCcEEEe
Confidence 5566666554 799999997 556778888999999999999998 788888775 999999988764321
Q ss_pred ecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEE-EecCCCe--EEEEeCCCCCccCCCCCceeeeee
Q 048801 368 IYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFV-TGSSDTF--ARVWSACKSSVEDSEQPIHELDVL 444 (1715)
Q Consensus 368 i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~La-tGs~DG~--IrVWDl~t~~~~~~~~~~~~l~~l 444 (1715)
. .+...+.+++|+|+|+.|+ +++.++. |++||+.+++ ...+
T Consensus 219 ~--------------------------~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~----------~~~l 262 (415)
T 2hqs_A 219 A--------------------------SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----------IRQV 262 (415)
T ss_dssp E--------------------------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC----------EEEC
T ss_pred e--------------------------cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC----------EEeC
Confidence 1 1234589999999999887 6665554 9999997643 3456
Q ss_pred cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcC-CC--eEEEEecCCCccCcccccccccccc
Q 048801 445 SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR-DG--SAIIWIPRSRRSHGKVGRWTRAYHL 521 (1715)
Q Consensus 445 ~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~-DG--sIrIWDl~t~~~~~~~~~~~~~~~l 521 (1715)
..|...+.+++|+|++ ..|++++. +| .|.+||+.++.
T Consensus 263 ~~~~~~~~~~~~spdg--------------------------~~l~~~s~~~g~~~i~~~d~~~~~-------------- 302 (415)
T 2hqs_A 263 TDGRSNNTEPTWFPDS--------------------------QNLAFTSDQAGRPQVYKVNINGGA-------------- 302 (415)
T ss_dssp CCCSSCEEEEEECTTS--------------------------SEEEEEECTTSSCEEEEEETTSSC--------------
T ss_pred cCCCCcccceEECCCC--------------------------CEEEEEECCCCCcEEEEEECCCCC--------------
Confidence 7788899999999987 56776665 55 57777876532
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC---CeEEEEECCCCceEEEEecCCCCeEEEEEccC
Q 048801 522 KVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAVDGSLVHSLTGHSASSYVLDVHPF 598 (1715)
Q Consensus 522 ~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D---GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~ 598 (1715)
...+..+...+.+++|+|||++|++++.+ ..|++||+.+++. ..+..|. .+.+++|+|
T Consensus 303 ----------------~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~sp- 363 (415)
T 2hqs_A 303 ----------------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAP- 363 (415)
T ss_dssp ----------------CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECT-
T ss_pred ----------------EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcC-
Confidence 11223345578899999999999988864 5899999998877 4566664 899999999
Q ss_pred CCcEEEEEeCCC---cEEEEECCCCceEEEEEcccceEEEEEEcCCCC
Q 048801 599 NPRIAMSAGYDG---RTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGT 643 (1715)
Q Consensus 599 dg~lLaSgs~DG---tI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~ 643 (1715)
++++|++++.++ .|++||+. +..+..+..+.+.|.+++|+|.-.
T Consensus 364 dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 364 NGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred CCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 666666666666 79999985 667778888889999999999643
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=7.4e-22 Score=252.41 Aligned_cols=317 Identities=9% Similarity=0.012 Sum_probs=240.7
Q ss_pred cccccceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC--CCCcEEEEecCCCCCeEEEEECC----CCCEEE
Q 048801 228 TMVQKMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSM--ETAFCLASCRGHEGDITDLAVSS----NNTLVA 301 (1715)
Q Consensus 228 ~~~~~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl--~tgk~l~tL~gHs~~VtsLafSp----Dg~lLA 301 (1715)
+...+.+++.++..+.. +.+++|+|||++|++++.|+.|.+||+ .+++++.++. +...+..++|+| ||++|+
T Consensus 164 ~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~ 241 (543)
T 1nir_A 164 VDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTI 241 (543)
T ss_dssp EETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEE
T ss_pred EECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEE
Confidence 44566788888884333 999999999999999999999999999 8999999988 455689999999 999999
Q ss_pred EEeC-CCeeEEEECCCCCceEEEeCC----------CC-CeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceec
Q 048801 302 SASN-DFVIRVWRLPDGLPISVLRGH----------TG-AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIY 369 (1715)
Q Consensus 302 SGS~-DGtIrVWDl~tg~~l~~L~gH----------~~-~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~ 369 (1715)
+++. +++|.|||..+++++.++..+ .. .+.++.++|++.. ++++...++.|.+||+.+.+.+....
T Consensus 242 v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~--~~vs~~~~g~i~vvd~~~~~~l~~~~ 319 (543)
T 1nir_A 242 AGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE--FIVNVKETGKVLLVNYKDIDNLTVTS 319 (543)
T ss_dssp EEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE--EEEEETTTTEEEEEECTTSSSCEEEE
T ss_pred EEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCE--EEEEECCCCeEEEEEecCCCcceeEE
Confidence 9884 899999999999999888652 23 7899999998773 67888999999999998765433111
Q ss_pred CCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEe-cCCCeEEEEeCCCCCccCCCCCceeeeeecC--
Q 048801 370 LPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTG-SSDTFARVWSACKSSVEDSEQPIHELDVLSG-- 446 (1715)
Q Consensus 370 ~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatG-s~DG~IrVWDl~t~~~~~~~~~~~~l~~l~g-- 446 (1715)
. .+...+.+++|+|+|++|+++ ..++.|.+||+.++++ +..+..
T Consensus 320 i------------------------~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l---------~~~i~~g~ 366 (543)
T 1nir_A 320 I------------------------GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL---------SALVDVGK 366 (543)
T ss_dssp E------------------------ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE---------EEEEECSS
T ss_pred e------------------------ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeE---------EEeeccCC
Confidence 1 012346789999999976654 5688999999987643 333332
Q ss_pred --CCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEc-CCCeEEEEecCCCccCcccccccccccccC
Q 048801 447 --HENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-RDGSAIIWIPRSRRSHGKVGRWTRAYHLKV 523 (1715)
Q Consensus 447 --H~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~ 523 (1715)
|.+....+ ++|++ +..++++. .|++|.+||+.+....
T Consensus 367 ~ph~g~g~~~-~~p~~-------------------------g~~~~s~~~~d~~V~v~d~~~~~~~-------------- 406 (543)
T 1nir_A 367 TPHPGRGANF-VHPKY-------------------------GPVWSTSHLGDGSISLIGTDPKNHP-------------- 406 (543)
T ss_dssp SBCCTTCEEE-EETTT-------------------------EEEEEEEBSSSSEEEEEECCTTTCT--------------
T ss_pred CCCCCCCccc-CCCCC-------------------------ccEEEeccCCCceEEEEEeCCCCCc--------------
Confidence 54433333 45553 25677776 6899999999862100
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe-------cCCeEEEEECCCCceE-EEE--------ecCC
Q 048801 524 PPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI-------MDCRICVWNAVDGSLV-HSL--------TGHS 587 (1715)
Q Consensus 524 ~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs-------~DGtI~IWDl~sg~~l-~tL--------~gH~ 587 (1715)
......+..+..+...+..++++|+|++|++++ .+++|.|||+.+++.. ..+ ..+.
T Consensus 407 --------~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~ 478 (543)
T 1nir_A 407 --------QYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA 478 (543)
T ss_dssp --------TTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC
T ss_pred --------hhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCC
Confidence 001233455666777888899999999999987 3679999999999887 454 3567
Q ss_pred CCeEEEEEccCCCcEEEEEe----CCCcEEEEECCCCceEEEEEcc
Q 048801 588 ASSYVLDVHPFNPRIAMSAG----YDGRTIVWDIWEGTPIRIYEIG 629 (1715)
Q Consensus 588 ~~V~sLafSP~dg~lLaSgs----~DGtI~VWDl~tgk~l~tl~~h 629 (1715)
..+..++|+|++..++++.. .|+.|.|||..+++++.++...
T Consensus 479 ~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 479 KRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp CEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred CceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence 78999999995555555432 4799999999999999998743
No 133
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=2.8e-22 Score=263.04 Aligned_cols=361 Identities=11% Similarity=0.054 Sum_probs=239.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCC---CeEEEEECCCCCEEEEEeCC---------CeeEEE
Q 048801 245 AVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEG---DITDLAVSSNNTLVASASND---------FVIRVW 312 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~---~VtsLafSpDg~lLASGS~D---------GtIrVW 312 (1715)
.+.+++|+|||+++++ +.||.|++||+.+++....+.+|.. .|.+++|||||++||+++.+ +.|.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 3667889999998877 7899999999999998888887765 49999999999999999875 788899
Q ss_pred ECCCCCceEEEe---CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCC
Q 048801 313 RLPDGLPISVLR---GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGP 389 (1715)
Q Consensus 313 Dl~tg~~l~~L~---gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~ 389 (1715)
|+.+++. ..+. +|...+.+++|+|+++ .|++++. +.|++||+.+++...............|....
T Consensus 97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~---~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~------ 165 (723)
T 1xfd_A 97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ---QLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDW------ 165 (723)
T ss_dssp ESSSCCC-EECCCTTCCSCCCSBCCBCSSTT---CEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCH------
T ss_pred ECCCCce-EeccCCccccccccccEECCCCC---EEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccce------
Confidence 9999876 3443 3445589999999998 6777665 78999999887654332110000000000000
Q ss_pred CCCCCCCCcceeEEEEccCCCeEEEecCC-CeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccc
Q 048801 390 SSSNGLQSHQILCCAYNANGTVFVTGSSD-TFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMS 468 (1715)
Q Consensus 390 ~~~~~~h~~~VtslafSpdG~~LatGs~D-G~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~ 468 (1715)
.....-...+.+++|+|||+.|++++.+ +.+.+|++.... ..+...+..+.|.+++
T Consensus 166 -v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~G-------- 222 (723)
T 1xfd_A 166 -LYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT--------------GSIYPTVKPYHYPKAG-------- 222 (723)
T ss_dssp -HHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS--------------SSSSCCCEEEECCBTT--------
T ss_pred -eEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccC--------------CcCCCcceeccCCCCC--------
Confidence 0000001134789999999999988754 467778764321 0122346777777654
Q ss_pred ccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCe
Q 048801 469 DAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGV 548 (1715)
Q Consensus 469 ~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~V 548 (1715)
.. ..+..|.+||+.+++....+ . . ......+...+
T Consensus 223 ------------------~~----~~~~~l~~~d~~~~~~~~~l---------~------------~--~~~~~~~~~~~ 257 (723)
T 1xfd_A 223 ------------------SE----NPSISLHVIGLNGPTHDLEM---------M------------P--PDDPRMREYYI 257 (723)
T ss_dssp ------------------SC----CCEEEEEEEESSSSCCCEEC---------C------------C--CCCGGGSSEEE
T ss_pred ------------------CC----CCeeEEEEEECCCCceeEEe---------e------------C--CccCCCcccee
Confidence 11 23458999999875421110 0 0 00112235578
Q ss_pred eEEEeCCCCCEEEEEec----CCeEEEEECCCCceEEEEec-CCCCeE----EEEEccCCCcEEEE-EeCCC------cE
Q 048801 549 NMIVWSLDNRFVLAAIM----DCRICVWNAVDGSLVHSLTG-HSASSY----VLDVHPFNPRIAMS-AGYDG------RT 612 (1715)
Q Consensus 549 tslafSPDG~~LaTgs~----DGtI~IWDl~sg~~l~tL~g-H~~~V~----sLafSP~dg~lLaS-gs~DG------tI 612 (1715)
..++|||||++|++.+. +..|++||+.++++...+.. +...+. .++|+|++..+++. +..+| .|
T Consensus 258 ~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l 337 (723)
T 1xfd_A 258 TMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHI 337 (723)
T ss_dssp EEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEE
T ss_pred EEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEE
Confidence 99999999999977654 35799999999988777654 334443 78999966556654 56777 57
Q ss_pred EEEE-CCCCc--eEEEEEcccceEEE-EEEcCCCCEEEEEeCC---CeEEEEECCCCc---cc--c------ccccceee
Q 048801 613 IVWD-IWEGT--PIRIYEIGRFKLVD-GKFSPDGTSIVLSDDV---GQIYLLNTGQGE---SQ--K------DAKYDQFF 674 (1715)
Q Consensus 613 ~VWD-l~tgk--~l~tl~~h~~~V~s-vafSPDG~~LAsgs~D---G~I~IWdl~tGe---~~--k------~~~~~~~f 674 (1715)
.+|| ...+. ++..+..+...+.. ++|||||+.|++++.+ +.+.||++..+. .. . .......|
T Consensus 338 ~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 417 (723)
T 1xfd_A 338 TVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASF 417 (723)
T ss_dssp EEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEE
T ss_pred EEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEE
Confidence 7777 34444 14445444445554 6999999999876554 789999876421 11 1 11234678
Q ss_pred cCCCccEEEcC
Q 048801 675 LGDYRPLIRDS 685 (1715)
Q Consensus 675 s~D~r~L~~d~ 685 (1715)
++|++.|++..
T Consensus 418 spdg~~l~~~~ 428 (723)
T 1xfd_A 418 SHSMDFFLLKC 428 (723)
T ss_dssp CTTSSEEEEEC
T ss_pred CCCCCEEEEEc
Confidence 89988887643
No 134
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=6.9e-22 Score=259.07 Aligned_cols=337 Identities=11% Similarity=0.040 Sum_probs=230.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEE-EEecCCC-----------------CCeEEEEECCCCCEEEEEeCCC
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCL-ASCRGHE-----------------GDITDLAVSSNNTLVASASNDF 307 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l-~tL~gHs-----------------~~VtsLafSpDg~lLASGS~DG 307 (1715)
+..+.|+ |..+++++.|+ | +||+.+++.+ ..+..|. ..|.+++|||| ..|+.+. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 4446677 66777777888 8 9999999874 4444333 56999999999 5655553 59
Q ss_pred eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCC-----CCCcceecCCCCCCCccCccC
Q 048801 308 VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY-----SQYSPRIYLPKPPDAITGKSN 382 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~t-----g~~l~~i~~~~~~~~i~g~~~ 382 (1715)
.|++||+.+++... +..+...+.+++|+|+++ .|+++ .++.|++||+.+ ++........ ......|.
T Consensus 102 ~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~---~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~-~~~~~~g~-- 173 (706)
T 2z3z_A 102 GLVGFDMLARKVTY-LFDTNEETASLDFSPVGD---RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDG-TETLVYGQ-- 173 (706)
T ss_dssp EEEEEETTTTEEEE-EECCTTCCTTCEECTTSS---EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCC-BTTEEESS--
T ss_pred EEEEEECCCCceEE-ccCCcccccCCcCCCCCC---EEEEE-ECCeEEEEecCcccccCCCcEEeccCC-CCCeEccc--
Confidence 99999998886544 455777899999999998 66764 679999999987 6543221110 00000000
Q ss_pred CCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec---------------------------------CCCeEEEEeCCCC
Q 048801 383 VPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS---------------------------------SDTFARVWSACKS 429 (1715)
Q Consensus 383 ~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs---------------------------------~DG~IrVWDl~t~ 429 (1715)
. ....+...+.+++|+|||++|++++ .+..|++||+.++
T Consensus 174 -------~-~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~ 245 (706)
T 2z3z_A 174 -------A-VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG 245 (706)
T ss_dssp -------C-CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT
T ss_pred -------c-hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC
Confidence 0 0111123468899999999999887 4578999999875
Q ss_pred CccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC-----eEEEEecC
Q 048801 430 SVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG-----SAIIWIPR 504 (1715)
Q Consensus 430 ~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG-----sIrIWDl~ 504 (1715)
+. ..+.....|...+.+++|+|++ +.|++++.++ .|.+||+.
T Consensus 246 ~~-------~~~~~~~~~~~~~~~~~~spdg--------------------------~~l~~~~~~~~~~~~~v~~~d~~ 292 (706)
T 2z3z_A 246 KT-------VYLQTGEPKEKFLTNLSWSPDE--------------------------NILYVAEVNRAQNECKVNAYDAE 292 (706)
T ss_dssp EE-------EECCCCSCTTCEEEEEEECTTS--------------------------SEEEEEEECTTSCEEEEEEEETT
T ss_pred ce-------EeeccCCCCceeEeeEEEECCC--------------------------CEEEEEEeCCCCCeeEEEEEECC
Confidence 32 1111223567789999999987 6777777665 89999998
Q ss_pred CCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC--CCCEEEEEecCCeEEEEECC-CCceEE
Q 048801 505 SRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL--DNRFVLAAIMDCRICVWNAV-DGSLVH 581 (1715)
Q Consensus 505 t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP--DG~~LaTgs~DGtI~IWDl~-sg~~l~ 581 (1715)
+++....+.. . ........+..++|+| ||++|+++..|+.++||.+. ++..+.
T Consensus 293 ~g~~~~~~~~---~---------------------~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~ 348 (706)
T 2z3z_A 293 TGRFVRTLFV---E---------------------TDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIR 348 (706)
T ss_dssp TCCEEEEEEE---E---------------------ECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEE
T ss_pred CCceeeEEEE---c---------------------cCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEE
Confidence 7521111000 0 0000011246689999 99999999999999999876 677888
Q ss_pred EEecCCCCeEE-EEEccCCCcEEEEEeCCC----cEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCC----C
Q 048801 582 SLTGHSASSYV-LDVHPFNPRIAMSAGYDG----RTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDV----G 652 (1715)
Q Consensus 582 tL~gH~~~V~s-LafSP~dg~lLaSgs~DG----tI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~D----G 652 (1715)
.+..|...+.. ++|+|++..+++++..++ .|..||+.+++ +..+. +...+.+++|||||++|+++..+ +
T Consensus 349 ~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~ 426 (706)
T 2z3z_A 349 QVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPR 426 (706)
T ss_dssp ECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSC
T ss_pred ecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCc
Confidence 88888888877 799996556666666665 67778887776 33343 56678899999999999876443 5
Q ss_pred eEEEEECCCCc
Q 048801 653 QIYLLNTGQGE 663 (1715)
Q Consensus 653 ~I~IWdl~tGe 663 (1715)
.|++|++.+++
T Consensus 427 ~i~l~d~~~~~ 437 (706)
T 2z3z_A 427 KVTVTNIGKGS 437 (706)
T ss_dssp EEEEEESSSCE
T ss_pred EEEEEECCCCe
Confidence 69999998876
No 135
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.89 E-value=9.2e-22 Score=233.66 Aligned_cols=269 Identities=11% Similarity=0.027 Sum_probs=182.3
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCC----CCEEEEEeCCC
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN----NTLVASASNDF 307 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpD----g~lLASGS~DG 307 (1715)
+.++++++.+|..+|..|+|.||-.-|+...- | .-+...|..|+|+|| ++++++++.+
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------~------~~~~~~v~sla~spd~~~~~~~l~s~g~~- 136 (356)
T 2w18_A 75 QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVAL-----------G------NLEIREIRALFCSSDDESEKQVLLKSGNI- 136 (356)
T ss_dssp BEEEEEEEECCSSCEEEECCCTTCCSCEEEEE-----------C------SSSEEEEEEECC------CCEEEEEEEEE-
T ss_pred cceeeEEEeccCceeEEEEEcCcccceeeeee-----------c------cccccceEEEEECCCccccccEEEeCCCe-
Confidence 34899999999999999999997643332211 1 124567999999999 9999998854
Q ss_pred eeEEEECCCCCceEE-EeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 308 VIRVWRLPDGLPISV-LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~-L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
+.||++.+++.+.. ..+|...|..++|+|++. .+.+.
T Consensus 137 -~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~---~~~s~-------------------------------------- 174 (356)
T 2w18_A 137 -KAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGG---GKENQ-------------------------------------- 174 (356)
T ss_dssp -EEEEEETTTEEEEEESSSTTCEEEEEEECTTSC---EEEEE--------------------------------------
T ss_pred -EEEEecCCCcEEEecccCCCCcEEEEEECCCCc---eeeee--------------------------------------
Confidence 88898877666665 356666677666666654 22211
Q ss_pred CCCCCCCCCCCcceeEEEEcc---CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCC---CCeeEEEEccCc
Q 048801 387 NGPSSSNGLQSHQILCCAYNA---NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE---NDVNYVQFSGCA 460 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSp---dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~---~~V~sLafspdg 460 (1715)
..|...+..++|++ ++.+||+|+.|++|+|||+.+++ ++..+.+|. ..+.+++|+|++
T Consensus 175 -------~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk---------~l~tL~g~~~~v~~v~~vafSpdG 238 (356)
T 2w18_A 175 -------FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ---------LLKKMHIDDSYQASVCHKAYSEMG 238 (356)
T ss_dssp -------EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC---------EEEEEECCC---CCCEEEEEEETT
T ss_pred -------ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc---------EEEEEcCCCcceeeeEEEEECCCC
Confidence 12345578888888 77999999999999999998864 456666543 467788999987
Q ss_pred ccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc
Q 048801 461 VASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR 540 (1715)
Q Consensus 461 ~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 540 (1715)
........ .. ....+++|+.|++|++||+.+++..... .+..
T Consensus 239 ~~lvs~s~----~~----------~~w~laSGs~D~tIklWd~~tgk~l~v~-------~~~~----------------- 280 (356)
T 2w18_A 239 LLFIVLSH----PC----------AKESESLRSPVFQLIVINPKTTLSVGVM-------LYCL----------------- 280 (356)
T ss_dssp EEEEEEC--------------------------CCEEEEEEETTTTEEEEEE-------EECC-----------------
T ss_pred CEEEEecc----CC----------CcceeeccCCCcEEEEEECCCCEEEEEE-------Eeec-----------------
Confidence 21100000 00 0024688999999999999876533210 0000
Q ss_pred ccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeE-EEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 541 LLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSY-VLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 541 l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~-sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
..+|...+.+..+ ++.++++|+.|++|+|||+.+++++.+|.+|...+. +++|+| ++.+|++|+.|++|+|||+
T Consensus 281 p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP-DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 281 PPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG-TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS-SSSEEEEECTTSCEEEEEE
T ss_pred cCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC-CCCEEEEEECCCcEEEecC
Confidence 0122223333333 488999999999999999999999999999987665 589999 7889999999999999995
No 136
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.87 E-value=5.1e-21 Score=236.29 Aligned_cols=269 Identities=10% Similarity=0.004 Sum_probs=209.0
Q ss_pred ccceeE--EEEcCCCCCeEEEEEcC--------------CCCEEEEEeCC------CcEEEEeCCCCcEEEEecCCCCCe
Q 048801 231 QKMQNI--KKLRGHRDAVYCAIFDR--------------SGRFVITGSDD------RLVKIWSMETAFCLASCRGHEGDI 288 (1715)
Q Consensus 231 ~~~k~l--~~L~GH~~~Vt~VafSp--------------DG~~LaTGS~D------GtIrIWDl~tgk~l~tL~gHs~~V 288 (1715)
.+.+++ ..+.+|...|.++++++ .+..|+.++.+ +.|++||+. +.....+.+|...|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v 181 (415)
T 2hqs_A 103 APGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPL 181 (415)
T ss_dssp STTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCE
T ss_pred CCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcc
Confidence 445555 56899999998888875 25566666554 799999997 45567888899999
Q ss_pred EEEEECCCCCEEEEEeCCC---eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEE-EecCCCc--EEEEecCCC
Q 048801 289 TDLAVSSNNTLVASASNDF---VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLL-SSSDDGT--CRIWDARYS 362 (1715)
Q Consensus 289 tsLafSpDg~lLASGS~DG---tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~La-SgS~DGt--VrIWDl~tg 362 (1715)
.+++|+|||++||+++.++ .|++||+.+++.. .+..|...+.+++|+|++. .|+ +++.++. |++||+.++
T Consensus 182 ~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~---~la~~~~~~g~~~i~~~d~~~~ 257 (415)
T 2hqs_A 182 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGS---KLAFALSKTGSLNLYVMDLASG 257 (415)
T ss_dssp EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSS---EEEEEECTTSSCEEEEEETTTC
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCC---EEEEEEecCCCceEEEEECCCC
Confidence 9999999999999999885 9999999998765 5677889999999999998 555 6666655 999999876
Q ss_pred CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-CC--eEEEEeCCCCCccCCCCCce
Q 048801 363 QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-DT--FARVWSACKSSVEDSEQPIH 439 (1715)
Q Consensus 363 ~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-DG--~IrVWDl~t~~~~~~~~~~~ 439 (1715)
+.. .+ ..+...+.+++|+|+|++|++++. ++ .|.+||+.++.
T Consensus 258 ~~~-~l-------------------------~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~--------- 302 (415)
T 2hqs_A 258 QIR-QV-------------------------TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA--------- 302 (415)
T ss_dssp CEE-EC-------------------------CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC---------
T ss_pred CEE-eC-------------------------cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC---------
Confidence 531 11 123456899999999998888876 45 67777887643
Q ss_pred eeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC---CeEEEEecCCCccCccccccc
Q 048801 440 ELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD---GSAIIWIPRSRRSHGKVGRWT 516 (1715)
Q Consensus 440 ~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D---GsIrIWDl~t~~~~~~~~~~~ 516 (1715)
...+..+...+.+++|+|++ +.|++++.+ +.|.+||+.+++.
T Consensus 303 -~~~l~~~~~~~~~~~~spdG--------------------------~~l~~~~~~~g~~~i~~~d~~~~~~-------- 347 (415)
T 2hqs_A 303 -PQRITWEGSQNQDADVSSDG--------------------------KFMVMVSSNGGQQHIAKQDLATGGV-------- 347 (415)
T ss_dssp -CEECCCSSSEEEEEEECTTS--------------------------SEEEEEEECSSCEEEEEEETTTCCE--------
T ss_pred -EEEEecCCCcccCeEECCCC--------------------------CEEEEEECcCCceEEEEEECCCCCE--------
Confidence 23345566788999999987 677776654 5899999986431
Q ss_pred ccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC---eEEEEECCCCceEEEEecCCCCeEEE
Q 048801 517 RAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAVDGSLVHSLTGHSASSYVL 593 (1715)
Q Consensus 517 ~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG---tI~IWDl~sg~~l~tL~gH~~~V~sL 593 (1715)
..+..+. .+.+++|+|||++|++++.++ .|++||+. +..+..+.+|.+.|.++
T Consensus 348 ----------------------~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~ 403 (415)
T 2hqs_A 348 ----------------------QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFP 403 (415)
T ss_dssp ----------------------EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEE
T ss_pred ----------------------EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCC
Confidence 1122232 688999999999999988877 79999986 66788899999999999
Q ss_pred EEccC
Q 048801 594 DVHPF 598 (1715)
Q Consensus 594 afSP~ 598 (1715)
+|+|.
T Consensus 404 ~~~~~ 408 (415)
T 2hqs_A 404 AWSPY 408 (415)
T ss_dssp EECCC
T ss_pred ccccc
Confidence 99993
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.87 E-value=1.4e-20 Score=247.86 Aligned_cols=304 Identities=9% Similarity=0.030 Sum_probs=222.0
Q ss_pred CCCeEEEEECCCCCEEEEEeC-CC-----eeEEEECCCCCceEEEeCCCCC------------------------eEEEE
Q 048801 285 EGDITDLAVSSNNTLVASASN-DF-----VIRVWRLPDGLPISVLRGHTGA------------------------VTAIA 334 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~-DG-----tIrVWDl~tg~~l~~L~gH~~~------------------------VtsLa 334 (1715)
...|.+++|||||++|++++. |+ .|++||+.+++....+..+... |.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457999999999999999998 88 9999999999887777655433 88999
Q ss_pred ecCCCCcceEEEEecCCCcEEEEecCCC---CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCe
Q 048801 335 FSPRPSAIYQLLSSSDDGTCRIWDARYS---QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTV 411 (1715)
Q Consensus 335 fSPdg~~~~~LaSgS~DGtVrIWDl~tg---~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~ 411 (1715)
|+|+++ +|++++. +.|.+||+.++ ... .+ ..+...+.+++|+|||++
T Consensus 116 ~SpDg~---~l~~~~~-~~i~~~d~~~~~~~~~~-~l-------------------------~~~~~~~~~~~~SPDG~~ 165 (741)
T 2ecf_A 116 WSPDAQ---RLLFPLG-GELYLYDLKQEGKAAVR-QL-------------------------THGEGFATDAKLSPKGGF 165 (741)
T ss_dssp ECTTSS---EEEEEET-TEEEEEESSSCSTTSCC-BC-------------------------CCSSSCEEEEEECTTSSE
T ss_pred ECCCCC---EEEEEeC-CcEEEEECCCCCcceEE-Ec-------------------------ccCCcccccccCCCCCCE
Confidence 999998 7777775 99999999876 321 11 122456899999999999
Q ss_pred EEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC----------------CeeEEEEccCcccccccccccccccc
Q 048801 412 FVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN----------------DVNYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 412 LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~----------------~V~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
|++++ ++.|++||+.++.. ......+.. .+.+++|+|++
T Consensus 166 la~~~-~~~i~~~d~~~g~~---------~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg--------------- 220 (741)
T 2ecf_A 166 VSFIR-GRNLWVIDLASGRQ---------MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD--------------- 220 (741)
T ss_dssp EEEEE-TTEEEEEETTTTEE---------EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS---------------
T ss_pred EEEEe-CCcEEEEecCCCCE---------EEeccCCccceeccccceeeeeccccccceEECCCC---------------
Confidence 99887 56999999987532 122222222 24779999987
Q ss_pred cccccCCcccCceEEEEcCCC---------------------------------eEEEEecCC-CccCcccccccccccc
Q 048801 476 VPKFKNSWFCHDNIVTCSRDG---------------------------------SAIIWIPRS-RRSHGKVGRWTRAYHL 521 (1715)
Q Consensus 476 ~~~~~~s~~~~~~LaSgS~DG---------------------------------sIrIWDl~t-~~~~~~~~~~~~~~~l 521 (1715)
+.|++++.|+ .|.+||+.+ ++....
T Consensus 221 -----------~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~---------- 279 (741)
T 2ecf_A 221 -----------SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWI---------- 279 (741)
T ss_dssp -----------SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEE----------
T ss_pred -----------CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEe----------
Confidence 5666665544 677777765 331100
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEec-----CCeEEEEECCCCceEEEEecCCC----CeEE
Q 048801 522 KVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM-----DCRICVWNAVDGSLVHSLTGHSA----SSYV 592 (1715)
Q Consensus 522 ~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~-----DGtI~IWDl~sg~~l~tL~gH~~----~V~s 592 (1715)
.....+...+..++| |||++|++++. +..|++||+.+++....+..+.. .+.+
T Consensus 280 -----------------~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~ 341 (741)
T 2ecf_A 280 -----------------DLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNS 341 (741)
T ss_dssp -----------------CCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSC
T ss_pred -----------------cCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCc
Confidence 000135567899999 99999998764 56899999999998887776654 4568
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEECC-CCceEEEEEcccceEEEE-EEcCCCCEEEEE-eCCC--eEEEEECCC-Ccccc
Q 048801 593 LDVHPFNPRIAMSAGYDGRTIVWDIW-EGTPIRIYEIGRFKLVDG-KFSPDGTSIVLS-DDVG--QIYLLNTGQ-GESQK 666 (1715)
Q Consensus 593 LafSP~dg~lLaSgs~DGtI~VWDl~-tgk~l~tl~~h~~~V~sv-afSPDG~~LAsg-s~DG--~I~IWdl~t-Ge~~k 666 (1715)
++|+| +++++++++.||.+.||.+. ++. +..+..+...|..+ .|+|||+.|+++ +.++ .++||++.. |....
T Consensus 342 ~~~sp-dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~ 419 (741)
T 2ecf_A 342 LRFLD-DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQ 419 (741)
T ss_dssp CEECT-TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCE
T ss_pred eEECC-CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCee
Confidence 99999 55688899999988888765 455 77777777778887 599999988654 4454 888988753 43222
Q ss_pred -----ccccceeecCCCccEEEc
Q 048801 667 -----DAKYDQFFLGDYRPLIRD 684 (1715)
Q Consensus 667 -----~~~~~~~fs~D~r~L~~d 684 (1715)
.......|++|++.|++.
T Consensus 420 ~l~~~~~~~~~~~spdg~~l~~~ 442 (741)
T 2ecf_A 420 RLSKAPGMHSASFARNASVYVDS 442 (741)
T ss_dssp ECCCSCSEEEEEECTTSSEEEEE
T ss_pred ecccCCCceEEEECCCCCEEEEE
Confidence 112356799999988765
No 138
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.86 E-value=9e-20 Score=215.07 Aligned_cols=285 Identities=14% Similarity=0.120 Sum_probs=202.0
Q ss_pred EEcCCCCE-EEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC-CCeeEEEECCCCCc-eEEEeCC
Q 048801 250 IFDRSGRF-VITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN-DFVIRVWRLPDGLP-ISVLRGH 326 (1715)
Q Consensus 250 afSpDG~~-LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~-DGtIrVWDl~tg~~-l~~L~gH 326 (1715)
.|.+++.+ +++++.++.|.+||+.+++.+..+..+...+ +++|+|+|++|++++. ++.|.+||+.+++. ...+..+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 46665555 6777789999999999999988888777777 9999999997776665 89999999999988 7777777
Q ss_pred CCCeEEEEecCCCCcceEEEEecCCC---cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEE
Q 048801 327 TGAVTAIAFSPRPSAIYQLLSSSDDG---TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCC 403 (1715)
Q Consensus 327 ~~~VtsLafSPdg~~~~~LaSgS~DG---tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsl 403 (1715)
...+.+++|+|++. +|+++..++ .|.+||+.+++.+..+.. .....++
T Consensus 83 ~~~~~~~~~s~dg~---~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~--------------------------~~~~~~~ 133 (331)
T 3u4y_A 83 QSSMADVDITPDDQ---FAVTVTGLNHPFNMQSYSFLKNKFISTIPI--------------------------PYDAVGI 133 (331)
T ss_dssp SSCCCCEEECTTSS---EEEECCCSSSSCEEEEEETTTTEEEEEEEC--------------------------CTTEEEE
T ss_pred CCCccceEECCCCC---EEEEecCCCCcccEEEEECCCCCeEEEEEC--------------------------CCCccce
Confidence 77666699999998 666555553 899999988876544321 2235799
Q ss_pred EEccCCCeEEE-ecCCCe-EEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccC
Q 048801 404 AYNANGTVFVT-GSSDTF-ARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKN 481 (1715)
Q Consensus 404 afSpdG~~Lat-Gs~DG~-IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~ 481 (1715)
+|+|+|++|++ +..++. |.+|++...... .............+..++|+|++
T Consensus 134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~spdg--------------------- 187 (331)
T 3u4y_A 134 AISPNGNGLILIDRSSANTVRRFKIDADGVL-----FDTGQEFISGGTRPFNITFTPDG--------------------- 187 (331)
T ss_dssp EECTTSSCEEEEEETTTTEEEEEEECTTCCE-----EEEEEEEECSSSSEEEEEECTTS---------------------
T ss_pred EECCCCCEEEEEecCCCceEEEEEECCCCcE-----eecCCccccCCCCccceEECCCC---------------------
Confidence 99999985554 455578 999998743210 00001112334467899999987
Q ss_pred CcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEE
Q 048801 482 SWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL 561 (1715)
Q Consensus 482 s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~La 561 (1715)
...++++..++.|.+||+.+++.... +..+ .....+..++|+|||++|+
T Consensus 188 ----~~l~v~~~~~~~v~v~d~~~~~~~~~--------------------------~~~~-~~~~~~~~~~~spdg~~l~ 236 (331)
T 3u4y_A 188 ----NFAFVANLIGNSIGILETQNPENITL--------------------------LNAV-GTNNLPGTIVVSRDGSTVY 236 (331)
T ss_dssp ----SEEEEEETTTTEEEEEECSSTTSCEE--------------------------EEEE-ECSSCCCCEEECTTSSEEE
T ss_pred ----CEEEEEeCCCCeEEEEECCCCcccce--------------------------eeec-cCCCCCceEEECCCCCEEE
Confidence 23566677899999999987543100 0111 1224567899999999877
Q ss_pred EEe-cCCeEEEEECCCCce--EEEEecC----CCC---eEEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 048801 562 AAI-MDCRICVWNAVDGSL--VHSLTGH----SAS---SYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 562 Tgs-~DGtI~IWDl~sg~~--l~tL~gH----~~~---V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk 621 (1715)
++. .++.|.+||+.+++. +..+..+ ... +..++|+|++..+++++..++.|.|||+....
T Consensus 237 v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 237 VLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred EEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 665 477899999999887 4444432 222 24589999555555666677899999996543
No 139
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.85 E-value=2.6e-19 Score=210.64 Aligned_cols=304 Identities=11% Similarity=0.106 Sum_probs=197.7
Q ss_pred EEEEEeCCCcEEEEeCC-CC--cEEEEecCCCCCeEEEEECCCCCEEEEEeCC-CeeEEEECC--CCC--ceEEEeCCCC
Q 048801 257 FVITGSDDRLVKIWSME-TA--FCLASCRGHEGDITDLAVSSNNTLVASASND-FVIRVWRLP--DGL--PISVLRGHTG 328 (1715)
Q Consensus 257 ~LaTGS~DGtIrIWDl~-tg--k~l~tL~gHs~~VtsLafSpDg~lLASGS~D-GtIrVWDl~--tg~--~l~~L~gH~~ 328 (1715)
++++++.|+.|++|++. ++ +.+..+ .|...+.+++|+|+|++|++++.+ +.|.+|++. ++. .+..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 34444779999999995 34 333333 477789999999999999988886 999999997 554 334455444
Q ss_pred CeEEEEecCCCCcceEEEE-ecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc
Q 048801 329 AVTAIAFSPRPSAIYQLLS-SSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA 407 (1715)
Q Consensus 329 ~VtsLafSPdg~~~~~LaS-gS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp 407 (1715)
.+.+++|+|++. +|++ +..++.|.+||+..+......... .....+.+++|+|
T Consensus 85 ~~~~~~~s~dg~---~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-----------------------~~~~~~~~~~~s~ 138 (343)
T 1ri6_A 85 SLTHISTDHQGQ---FVFVGSYNAGNVSVTRLEDGLPVGVVDVV-----------------------EGLDGCHSANISP 138 (343)
T ss_dssp CCSEEEECTTSS---EEEEEETTTTEEEEEEEETTEEEEEEEEE-----------------------CCCTTBCCCEECT
T ss_pred CCcEEEEcCCCC---EEEEEecCCCeEEEEECCCCccccccccc-----------------------cCCCCceEEEECC
Confidence 789999999997 5544 455899999999532211111000 0122378899999
Q ss_pred CCCeEEEec-CCCeEEEEeCCC-CCccCCCCCceeee--eecC-CCCCeeEEEEccCcccccccccccccccccccccCC
Q 048801 408 NGTVFVTGS-SDTFARVWSACK-SSVEDSEQPIHELD--VLSG-HENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNS 482 (1715)
Q Consensus 408 dG~~LatGs-~DG~IrVWDl~t-~~~~~~~~~~~~l~--~l~g-H~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s 482 (1715)
+|++|++++ .++.|.+|++.+ ++. ..+. .+.. ....+.+++|+|++
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~pdg---------------------- 189 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDGHL-------VAQDPAEVTTVEGAGPRHMVFHPNE---------------------- 189 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCE-------EEEEEEEEECSTTCCEEEEEECTTS----------------------
T ss_pred CCCEEEEecCCCCEEEEEEecCCCce-------eeecccccccCCCCCcceEEECCCC----------------------
Confidence 999877776 889999999975 321 1111 2222 33478889999987
Q ss_pred cccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEE
Q 048801 483 WFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLA 562 (1715)
Q Consensus 483 ~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaT 562 (1715)
...++++..++.|.+|++..... . +.........+ .-......+..++|+|+|++|++
T Consensus 190 ---~~l~~~~~~~~~i~~~~~~~~~g--~---~~~~~~~~~~~--------------~~~~~~~~~~~i~~s~dg~~l~v 247 (343)
T 1ri6_A 190 ---QYAYCVNELNSSVDVWELKDPHG--N---IECVQTLDMMP--------------ENFSDTRWAADIHITPDGRHLYA 247 (343)
T ss_dssp ---SEEEEEETTTTEEEEEESSCTTS--C---CEEEEEEECSC--------------TTCCSCCCEEEEEECTTSSEEEE
T ss_pred ---CEEEEEeCCCCEEEEEEecCCCC--c---EEEEeeccccC--------------ccccccCCccceEECCCCCEEEE
Confidence 22445666899999999963110 0 00000000000 00011335778999999998875
Q ss_pred Ee-cCCeEEEEECC--C--CceEEEEecCCCCeEEEEEccCCCcEEEEEe-CCCcEEEEE--CCCCc--eEEEEEcccce
Q 048801 563 AI-MDCRICVWNAV--D--GSLVHSLTGHSASSYVLDVHPFNPRIAMSAG-YDGRTIVWD--IWEGT--PIRIYEIGRFK 632 (1715)
Q Consensus 563 gs-~DGtI~IWDl~--s--g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs-~DGtI~VWD--l~tgk--~l~tl~~h~~~ 632 (1715)
+. .++.|.+|++. + .+.+..+..+.. +.+++|+| ++++|++++ .++.|.||+ ..+|+ .+..+..+ ..
T Consensus 248 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~ 324 (343)
T 1ri6_A 248 CDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDH-SGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QG 324 (343)
T ss_dssp EETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECT-TSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SS
T ss_pred EecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECC-CCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CC
Confidence 44 78999999998 3 345555655554 88999999 555555555 789999995 44664 34444432 33
Q ss_pred EEEEEEcCCC
Q 048801 633 LVDGKFSPDG 642 (1715)
Q Consensus 633 V~svafSPDG 642 (1715)
..+++|.|+.
T Consensus 325 p~~i~~~~~~ 334 (343)
T 1ri6_A 325 PMWVVVNAHE 334 (343)
T ss_dssp CCEEEEEEEC
T ss_pred CeeEEEEccc
Confidence 5566676654
No 140
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.85 E-value=9.2e-19 Score=207.49 Aligned_cols=286 Identities=9% Similarity=0.025 Sum_probs=214.7
Q ss_pred CCCeEEEEECCCCCEEEEEeC-------CCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEE
Q 048801 285 EGDITDLAVSSNNTLVASASN-------DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIW 357 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~-------DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIW 357 (1715)
...+..++|+|++++|++++. ++.|.+||+.+++.+..+.. ...+.+++|+|+++. .+++...++.|.+|
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~--l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQT--LWFGNTVNSAVTAI 116 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTE--EEEEETTTTEEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCE--EEEEecCCCEEEEE
Confidence 456789999999998888874 56899999999998888764 445789999999873 45666778999999
Q ss_pred ecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec--CCCeEEEEeCCCCCccCCC
Q 048801 358 DARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS--SDTFARVWSACKSSVEDSE 435 (1715)
Q Consensus 358 Dl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs--~DG~IrVWDl~t~~~~~~~ 435 (1715)
|+.+++.+..+........ .......+.+++|+|+|+++++++ .++.|.+||+.+++
T Consensus 117 d~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~----- 175 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRT----------------EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK----- 175 (353)
T ss_dssp ETTTCCEEEEEESCCCCCC----------------SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE-----
T ss_pred eCCCCeeEEEEecCCCccc----------------cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc-----
Confidence 9999887666544221100 001122468899999999777665 47899999998643
Q ss_pred CCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccc
Q 048801 436 QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRW 515 (1715)
Q Consensus 436 ~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~ 515 (1715)
.+..+..+...+.+++|+|++ +.|++++.++.|.+||+.+++.......
T Consensus 176 ----~~~~~~~~~~~~~~~~~s~dg--------------------------~~l~~~~~~~~i~~~d~~~~~~~~~~~~- 224 (353)
T 3vgz_A 176 ----LKTAIQNTGKMSTGLALDSEG--------------------------KRLYTTNADGELITIDTADNKILSRKKL- 224 (353)
T ss_dssp ----EEEEECCCCTTCCCCEEETTT--------------------------TEEEEECTTSEEEEEETTTTEEEEEEEC-
T ss_pred ----eEEEecCCCCccceEEECCCC--------------------------CEEEEEcCCCeEEEEECCCCeEEEEEEc-
Confidence 344455455568889999986 6788888899999999987553221100
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC-CeEEEEECCCCceEEEEecCCCCeEEEE
Q 048801 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD-CRICVWNAVDGSLVHSLTGHSASSYVLD 594 (1715)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D-GtI~IWDl~sg~~l~tL~gH~~~V~sLa 594 (1715)
...++...+..++|+|+|++|++++.+ +.|.+||+.+++.+..+..+.. .+++
T Consensus 225 ------------------------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~ 278 (353)
T 3vgz_A 225 ------------------------LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVL 278 (353)
T ss_dssp ------------------------CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEE
T ss_pred ------------------------CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEE
Confidence 001134457889999999988776654 8999999999999888875443 5799
Q ss_pred EccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCC
Q 048801 595 VHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVG 652 (1715)
Q Consensus 595 fSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG 652 (1715)
|+|++..++++...++.|.+||+.+++.+..+..+ ..+..++|+|||++|+++...+
T Consensus 279 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 279 FNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred ECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence 99955556667668999999999999999888754 4678999999999888776553
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.85 E-value=5.6e-19 Score=208.29 Aligned_cols=284 Identities=10% Similarity=0.016 Sum_probs=198.7
Q ss_pred EEECCCCC-EEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCC-ccee
Q 048801 291 LAVSSNNT-LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQY-SPRI 368 (1715)
Q Consensus 291 LafSpDg~-lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~-l~~i 368 (1715)
..|.+++. .+++++.++.|.+||+.+++.+..+..+...+ +++|+|+++. .++++..++.|.+||+.+++. ...+
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~--l~~~~~~~~~i~~~d~~~~~~~~~~~ 79 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSN--VVVTSDFCQTLVQIETQLEPPKVVAI 79 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCE--EEEEESTTCEEEEEECSSSSCEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCE--EEEEeCCCCeEEEEECCCCceeEEec
Confidence 34555554 46777889999999999999988888777777 9999999972 344455589999999988775 3322
Q ss_pred cCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC---eEEEEeCCCCCccCCCCCceeeeeec
Q 048801 369 YLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT---FARVWSACKSSVEDSEQPIHELDVLS 445 (1715)
Q Consensus 369 ~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG---~IrVWDl~t~~~~~~~~~~~~l~~l~ 445 (1715)
.. +.....+++|+|+|++|+++..++ .|.+||+.+++ .+..+.
T Consensus 80 ~~-------------------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~---------~~~~~~ 125 (331)
T 3u4y_A 80 QE-------------------------GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNK---------FISTIP 125 (331)
T ss_dssp EE-------------------------CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTE---------EEEEEE
T ss_pred cc-------------------------CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCC---------eEEEEE
Confidence 11 122233499999999998666553 89999997653 233333
Q ss_pred CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCe-EEEEecCCCccCcccccccccccccCC
Q 048801 446 GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGS-AIIWIPRSRRSHGKVGRWTRAYHLKVP 524 (1715)
Q Consensus 446 gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGs-IrIWDl~t~~~~~~~~~~~~~~~l~~~ 524 (1715)
. .....+++|+|++ ...++++..++. |.+|++..........
T Consensus 126 ~-~~~~~~~~~spdg-------------------------~~l~~~~~~~~~~i~~~~~~~~g~~~~~~----------- 168 (331)
T 3u4y_A 126 I-PYDAVGIAISPNG-------------------------NGLILIDRSSANTVRRFKIDADGVLFDTG----------- 168 (331)
T ss_dssp C-CTTEEEEEECTTS-------------------------SCEEEEEETTTTEEEEEEECTTCCEEEEE-----------
T ss_pred C-CCCccceEECCCC-------------------------CEEEEEecCCCceEEEEEECCCCcEeecC-----------
Confidence 3 3456899999987 235556666688 9999987532110000
Q ss_pred CCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCce---EEEEecCCCCeEEEEEccCCC
Q 048801 525 PPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGSL---VHSLTGHSASSYVLDVHPFNP 600 (1715)
Q Consensus 525 ~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~~---l~tL~gH~~~V~sLafSP~dg 600 (1715)
.........+..++|+|+|++|++++ .++.|.+||+.+++. +..+..+ ..+..++|+|++.
T Consensus 169 --------------~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~ 233 (331)
T 3u4y_A 169 --------------QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGS 233 (331)
T ss_dssp --------------EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSS
T ss_pred --------------CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCC
Confidence 01112334578999999999665554 688999999999998 7777754 5568999999544
Q ss_pred cEEEEEeCCCcEEEEECCCCce--EEEEEcc----cce---EEEEEEcCCCCEEEEEeC-CCeEEEEECCCCc
Q 048801 601 RIAMSAGYDGRTIVWDIWEGTP--IRIYEIG----RFK---LVDGKFSPDGTSIVLSDD-VGQIYLLNTGQGE 663 (1715)
Q Consensus 601 ~lLaSgs~DGtI~VWDl~tgk~--l~tl~~h----~~~---V~svafSPDG~~LAsgs~-DG~I~IWdl~tGe 663 (1715)
.++++...++.|.+||+.+++. +..+..+ ... +..++|+|||++|++++. ++.|.||++....
T Consensus 234 ~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 234 TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 4555656688999999999887 5544422 111 245899999999876654 6799999997654
No 142
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=1.3e-19 Score=207.24 Aligned_cols=255 Identities=17% Similarity=0.122 Sum_probs=188.6
Q ss_pred EEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC-CCceEEEeCCC-CCeEEEEecC
Q 048801 260 TGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD-GLPISVLRGHT-GAVTAIAFSP 337 (1715)
Q Consensus 260 TGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t-g~~l~~L~gH~-~~VtsLafSP 337 (1715)
+++.|+.|++||+.+++.. .+..|...|.+++|+|+|++|++++ ++.|++||+.+ +.....+.+|. ..|.+++|+|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 4467899999999988766 4556899999999999999999987 78999999999 88777766663 6789999999
Q ss_pred CCCcceEEEEec--CCCcEEEEec--CCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEE
Q 048801 338 RPSAIYQLLSSS--DDGTCRIWDA--RYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFV 413 (1715)
Q Consensus 338 dg~~~~~LaSgS--~DGtVrIWDl--~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~La 413 (1715)
++. +|++++ .++.+.||.+ .++.. ..+ .....+.+++|+|+|+.|+
T Consensus 95 dg~---~l~~~~~~~~~~~~l~~~~~~~~~~-~~~--------------------------~~~~~~~~~~~spdg~~l~ 144 (297)
T 2ojh_A 95 DGA---LYAISDKVEFGKSAIYLLPSTGGTP-RLM--------------------------TKNLPSYWHGWSPDGKSFT 144 (297)
T ss_dssp TSS---EEEEEECTTTSSCEEEEEETTCCCC-EEC--------------------------CSSSSEEEEEECTTSSEEE
T ss_pred CCC---EEEEEEeCCCCcceEEEEECCCCce-EEe--------------------------ecCCCccceEECCCCCEEE
Confidence 998 777777 4455666654 33321 111 0112378899999999877
Q ss_pred -EecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEE
Q 048801 414 -TGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTC 492 (1715)
Q Consensus 414 -tGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSg 492 (1715)
+++.++.+.||++.... .....+..+...+.+++|+|++ ..|+.+
T Consensus 145 ~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~s~dg--------------------------~~l~~~ 190 (297)
T 2ojh_A 145 YCGIRDQVFDIYSMDIDS--------GVETRLTHGEGRNDGPDYSPDG--------------------------RWIYFN 190 (297)
T ss_dssp EEEEETTEEEEEEEETTT--------CCEEECCCSSSCEEEEEECTTS--------------------------SEEEEE
T ss_pred EEECCCCceEEEEEECCC--------CcceEcccCCCccccceECCCC--------------------------CEEEEE
Confidence 77789999999864321 1234566777889999999987 555544
Q ss_pred -cCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC-----
Q 048801 493 -SRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD----- 566 (1715)
Q Consensus 493 -S~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D----- 566 (1715)
..++.+.||++... +.....+..+...+.+++|+|+|++|++++.+
T Consensus 191 ~~~~~~~~i~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 242 (297)
T 2ojh_A 191 SSRTGQMQIWRVRVD----------------------------GSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFD 242 (297)
T ss_dssp ECTTSSCEEEEEETT----------------------------SSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCS
T ss_pred ecCCCCccEEEECCC----------------------------CCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCc
Confidence 46999999987521 11223344456678899999999999988766
Q ss_pred ------CeEEEEECCCCce--EEEEecCCCCeEEEEEccCCCcEEEEEeCC
Q 048801 567 ------CRICVWNAVDGSL--VHSLTGHSASSYVLDVHPFNPRIAMSAGYD 609 (1715)
Q Consensus 567 ------GtI~IWDl~sg~~--l~tL~gH~~~V~sLafSP~dg~lLaSgs~D 609 (1715)
+.|++||+.+++. +..+.+|...+.+++|+| ++..|++++.+
T Consensus 243 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~ 292 (297)
T 2ojh_A 243 HPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSP-DGDEFAYVRYF 292 (297)
T ss_dssp CCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCT-TSSEEEEEEEC
T ss_pred ccccCceEEEEEecCCCCceeeeccCCCCcccccceECC-CCCEEEEEEec
Confidence 5699999998876 444558888999999999 55555555443
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.84 E-value=4.4e-19 Score=208.21 Aligned_cols=287 Identities=9% Similarity=-0.015 Sum_probs=201.6
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEecCCCC--CeEEEEECCCCCEEE-EEeCCCeeEEEECCCCCceEEEeC-C----C
Q 048801 256 RFVITGSDDRLVKIWSMETAFCLASCRGHEG--DITDLAVSSNNTLVA-SASNDFVIRVWRLPDGLPISVLRG-H----T 327 (1715)
Q Consensus 256 ~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~--~VtsLafSpDg~lLA-SGS~DGtIrVWDl~tg~~l~~L~g-H----~ 327 (1715)
.+|++++.++.|.+||+.+++.+..+..... .+.+++|+|+|++|+ +++.++.|.+||+.+++.+..+.. + .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4789999999999999999999888763322 488999999997664 555678999999999998877763 2 2
Q ss_pred CCeEEEEecCCCCcceEEEEec------------CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCC
Q 048801 328 GAVTAIAFSPRPSAIYQLLSSS------------DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL 395 (1715)
Q Consensus 328 ~~VtsLafSPdg~~~~~LaSgS------------~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~ 395 (1715)
..+.+++|+|++. +|++++ .++.|.+||+.+++....+..
T Consensus 82 ~~~~~~~~s~dg~---~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~------------------------- 133 (337)
T 1pby_B 82 KSLFGAALSPDGK---TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA------------------------- 133 (337)
T ss_dssp ECTTCEEECTTSS---EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-------------------------
T ss_pred ccccceEECCCCC---EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-------------------------
Confidence 2677899999997 566664 579999999988765544321
Q ss_pred CCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccc
Q 048801 396 QSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 396 h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
...+.+++|+|+|++|+++ ++.|.+||+.+++. +..+..+.. ...+.|+|++.....
T Consensus 134 -~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~---------~~~~~~~~~-~~~~~~s~dg~~l~~---------- 190 (337)
T 1pby_B 134 -PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTL---------VEDKPIQSW-EAETYAQPDVLAVWN---------- 190 (337)
T ss_dssp -CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEE---------EEEECSTTT-TTTTBCCCBCCCCCC----------
T ss_pred -CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcE---------eeeeecccc-CCCceeCCCccEEee----------
Confidence 1236778999999988887 68899999987532 222322220 011255665410000
Q ss_pred cccccCCcccCc----eEEEEcCCC----------eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccc
Q 048801 476 VPKFKNSWFCHD----NIVTCSRDG----------SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRL 541 (1715)
Q Consensus 476 ~~~~~~s~~~~~----~LaSgS~DG----------sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l 541 (1715)
.. .... .......++ .|.+||+.+++.. . ..+
T Consensus 191 -----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~---------------------------~~~ 236 (337)
T 1pby_B 191 -----QH-ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-M---------------------------REV 236 (337)
T ss_dssp -----CC-TTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-E---------------------------EEE
T ss_pred -----ec-cCCCceeeeeeccccccccccccccccceEEEeCCCCCce-E---------------------------eec
Confidence 00 0000 111111222 5788888765421 0 111
Q ss_pred cCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 048801 542 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 542 ~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk 621 (1715)
..+...+.+++|+|+|++|+++ ++.|++||+.+++.+..+..+ ..+.+++|+| ++++|++++.++.|.+||+.+++
T Consensus 237 ~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 237 RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVST-DGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECT-TSCEEEEESBSSEEEEEETTTCC
T ss_pred CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECC-CCCEEEEEcCCCcEEEEECcCCc
Confidence 2234567889999999999988 799999999999988887644 4578999999 56666677889999999999999
Q ss_pred eEEEEEcccc
Q 048801 622 PIRIYEIGRF 631 (1715)
Q Consensus 622 ~l~tl~~h~~ 631 (1715)
.+..+..+..
T Consensus 313 ~~~~~~~~~~ 322 (337)
T 1pby_B 313 KKGQVDLPGN 322 (337)
T ss_dssp EEEEEECGGG
T ss_pred EEEEEEcCCC
Confidence 9988875543
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.83 E-value=6.5e-19 Score=230.84 Aligned_cols=290 Identities=12% Similarity=0.066 Sum_probs=205.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC-----CC
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD-----GL 318 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t-----g~ 318 (1715)
..|.+++|+|| ++|+.+. ++.|++||+.+++... +..+...+.+++|||||++||++ .++.|++|++.+ ++
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 57999999999 6666554 5999999999887654 44577789999999999999995 679999999998 87
Q ss_pred ceEEEeCCCCC--------------eEEEEecCCCCcceEEEEec---------------------------------CC
Q 048801 319 PISVLRGHTGA--------------VTAIAFSPRPSAIYQLLSSS---------------------------------DD 351 (1715)
Q Consensus 319 ~l~~L~gH~~~--------------VtsLafSPdg~~~~~LaSgS---------------------------------~D 351 (1715)
.......+... +.+++|+|+++ +|++++ .+
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~---~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~ 234 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGS---CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH 234 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSS---EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCC---EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence 76655544443 48999999998 677776 45
Q ss_pred CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC-----eEEEEeC
Q 048801 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT-----FARVWSA 426 (1715)
Q Consensus 352 GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG-----~IrVWDl 426 (1715)
..|.+||+.+++..... . ...+...+.+++|+|||+.|++++.++ .|.+||+
T Consensus 235 ~~l~~~d~~~~~~~~~~-~----------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~ 291 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQ-T----------------------GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDA 291 (706)
T ss_dssp EEEEEEETTTTEEEECC-C----------------------CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEET
T ss_pred eEEEEEECCCCceEeec-c----------------------CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEEC
Confidence 67999999876532111 0 012345689999999999999877665 8999999
Q ss_pred CCCCccCCCCCceeeeeecCCC---CCeeEEEEcc--CcccccccccccccccccccccCCcccCceEEEEcCCCeEEEE
Q 048801 427 CKSSVEDSEQPIHELDVLSGHE---NDVNYVQFSG--CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIW 501 (1715)
Q Consensus 427 ~t~~~~~~~~~~~~l~~l~gH~---~~V~sLafsp--dg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIW 501 (1715)
.+++. ...+.. ..+. ..+.+++|+| ++ .+|++++.||.+.||
T Consensus 292 ~~g~~------~~~~~~-~~~~~~~~~~~~~~~sp~~dg--------------------------~~l~~~~~~g~~~l~ 338 (706)
T 2z3z_A 292 ETGRF------VRTLFV-ETDKHYVEPLHPLTFLPGSNN--------------------------QFIWQSRRDGWNHLY 338 (706)
T ss_dssp TTCCE------EEEEEE-EECSSCCCCCSCCEECTTCSS--------------------------EEEEEECTTSSCEEE
T ss_pred CCCce------eeEEEE-ccCCCeECccCCceeecCCCC--------------------------EEEEEEccCCccEEE
Confidence 87521 111111 1111 2346788998 76 688889999999999
Q ss_pred ecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeE-EEeCCCCCEEEEEecC-C----eEEEEECC
Q 048801 502 IPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNM-IVWSLDNRFVLAAIMD-C----RICVWNAV 575 (1715)
Q Consensus 502 Dl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vts-lafSPDG~~LaTgs~D-G----tI~IWDl~ 575 (1715)
.+... +.....+..+...+.. ++|+|+|+.|++++.+ + .|+.||+.
T Consensus 339 ~~~~~----------------------------~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 390 (706)
T 2z3z_A 339 LYDTT----------------------------GRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIK 390 (706)
T ss_dssp EEETT----------------------------SCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETT
T ss_pred EEECC----------------------------CCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcC
Confidence 87520 1112223344556766 7999999988766554 3 67888887
Q ss_pred CCceEEEEecCCCCeEEEEEccCCCcEEEEEeCC---CcEEEEECCCCceEEEEE
Q 048801 576 DGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYD---GRTIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 576 sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~D---GtI~VWDl~tgk~l~tl~ 627 (1715)
+++ +..+. |...+.+++|+|++..++++++.+ +.|++||+.+++ +..+.
T Consensus 391 ~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~ 442 (706)
T 2z3z_A 391 GGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLE 442 (706)
T ss_dssp CCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEEE
T ss_pred CCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe-Eeecc
Confidence 776 34443 677799999999554454444443 569999998887 44443
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.83 E-value=1.8e-19 Score=206.04 Aligned_cols=255 Identities=15% Similarity=0.127 Sum_probs=188.2
Q ss_pred EEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCC-CCCcceecCCCCCCCccCc
Q 048801 302 SASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY-SQYSPRIYLPKPPDAITGK 380 (1715)
Q Consensus 302 SGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~t-g~~l~~i~~~~~~~~i~g~ 380 (1715)
+++.|+.|++||+.+++.. .+..|...|.+++|+|++. +|++++ ++.|.+||+.+ ++......
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~---~l~~~~-~~~i~~~d~~~~~~~~~~~~----------- 80 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGK---YLLLNS-EGLLYRLSLAGDPSPEKVDT----------- 80 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSS---EEEEEE-TTEEEEEESSSCCSCEECCC-----------
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCC---EEEEEc-CCeEEEEeCCCCCCceEecc-----------
Confidence 3467899999999988765 4556899999999999998 677766 78999999987 65432110
Q ss_pred cCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec--CCCeEEEEeC--CCCCccCCCCCceeeeeecCCCCCeeEEEE
Q 048801 381 SNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS--SDTFARVWSA--CKSSVEDSEQPIHELDVLSGHENDVNYVQF 456 (1715)
Q Consensus 381 ~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs--~DG~IrVWDl--~t~~~~~~~~~~~~l~~l~gH~~~V~sLaf 456 (1715)
..+...+.+++|+|+|++|++++ .++.+.||.+ .++. ...+..+. .+.+++|
T Consensus 81 -------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~-~~~~~~~ 136 (297)
T 2ojh_A 81 -------------GFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT----------PRLMTKNL-PSYWHGW 136 (297)
T ss_dssp -------------TTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC----------CEECCSSS-SEEEEEE
T ss_pred -------------ccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc----------eEEeecCC-CccceEE
Confidence 01134578899999999999988 3345555554 3321 22333333 4888999
Q ss_pred ccCcccccccccccccccccccccCCcccCceEE-EEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCC
Q 048801 457 SGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIV-TCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRG 535 (1715)
Q Consensus 457 spdg~as~~~~~~~~~~~~~~~~~~s~~~~~~La-SgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g 535 (1715)
+|++ ..|+ +++.++.+.||++....
T Consensus 137 spdg--------------------------~~l~~~~~~~~~~~l~~~~~~~---------------------------- 162 (297)
T 2ojh_A 137 SPDG--------------------------KSFTYCGIRDQVFDIYSMDIDS---------------------------- 162 (297)
T ss_dssp CTTS--------------------------SEEEEEEEETTEEEEEEEETTT----------------------------
T ss_pred CCCC--------------------------CEEEEEECCCCceEEEEEECCC----------------------------
Confidence 9987 4454 78899999999865211
Q ss_pred CCcccccCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECC-CCceEEEEecCCCCeEEEEEccCCCcEEEEEeCC----
Q 048801 536 GPRQRLLPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAV-DGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYD---- 609 (1715)
Q Consensus 536 ~~~~~l~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~-sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~D---- 609 (1715)
.....+..+...+.+++|+|+|++|++++ .++.+.||++. .+..+..+..|...+.+++|+| ++.+|++++.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~ 241 (297)
T 2ojh_A 163 GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP-SGDKVVFVSYDADVF 241 (297)
T ss_dssp CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECT-TSSEEEEEEEETTCC
T ss_pred CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECC-CCCEEEEEEcCCCCC
Confidence 11223445567789999999999888776 58899999986 5667788888888899999999 66666666554
Q ss_pred -------CcEEEEECCCCceE--EEEEcccceEEEEEEcCCCCEEEEEeCC
Q 048801 610 -------GRTIVWDIWEGTPI--RIYEIGRFKLVDGKFSPDGTSIVLSDDV 651 (1715)
Q Consensus 610 -------GtI~VWDl~tgk~l--~tl~~h~~~V~svafSPDG~~LAsgs~D 651 (1715)
+.|++||+.+++.. ..+..|...+..++|+|||++|++++.+
T Consensus 242 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 242 DHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp SCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred cccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 56999999988764 4444677788999999999999987664
No 146
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=6.8e-20 Score=240.83 Aligned_cols=340 Identities=9% Similarity=0.025 Sum_probs=226.3
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCC---CeEEEEECCCCCEEEEEeC---------CCeeEEEECC
Q 048801 248 CAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEG---DITDLAVSSNNTLVASASN---------DFVIRVWRLP 315 (1715)
Q Consensus 248 ~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~---~VtsLafSpDg~lLASGS~---------DGtIrVWDl~ 315 (1715)
+++|+|||++++++ .|+.|++||+.+++....+.+|.. .|.+++|||||++||+++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 67899999665554 699999999999998887776644 4899999999999999876 7899999999
Q ss_pred CCCce--EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCC
Q 048801 316 DGLPI--SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSN 393 (1715)
Q Consensus 316 tg~~l--~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~ 393 (1715)
+++.+ ..+ ...+.+++|+|+++ .|+++. ++.|++|++.+++... +....... ...
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SPDG~---~la~~~-~~~i~~~~~~~g~~~~-l~~~~~~~---------------~v~ 155 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSPVGS---KLAYVY-QNNIYLKQRPGDPPFQ-ITFNGREN---------------KIF 155 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECSSTT---CEEEEE-TTEEEEESSTTSCCEE-CCCCCBTT---------------TEE
T ss_pred CCccccceec---CcccccceECCCCC---EEEEEE-CCeEEEEeCCCCCcEE-EecCCCcC---------------CeE
Confidence 88752 222 35688999999998 566664 7899999998876532 11100000 000
Q ss_pred CCCC---------cceeEEEEccCCCeEEEecCCC----------------------------------eEEEEeCCCCC
Q 048801 394 GLQS---------HQILCCAYNANGTVFVTGSSDT----------------------------------FARVWSACKSS 430 (1715)
Q Consensus 394 ~~h~---------~~VtslafSpdG~~LatGs~DG----------------------------------~IrVWDl~t~~ 430 (1715)
.++. ....+++|+|||+.|++++.|. .|++||+.+++
T Consensus 156 ~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~ 235 (719)
T 1z68_A 156 NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPA 235 (719)
T ss_dssp ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHH
T ss_pred cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCC
Confidence 0111 1125899999999999887542 78899987643
Q ss_pred ccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcC--C--CeEEEEe----
Q 048801 431 VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR--D--GSAIIWI---- 502 (1715)
Q Consensus 431 ~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~--D--GsIrIWD---- 502 (1715)
..... .......+.+|...+.+++|+|++ ..+++... + ..|.+||
T Consensus 236 ~~~~~-~~~~~~~~~~~~~~~~~~~~SpD~--------------------------~~~~~~~~~~~~~~~l~~~d~~~~ 288 (719)
T 1z68_A 236 YVGPQ-EVPVPAMIASSDYYFSWLTWVTDE--------------------------RVCLQWLKRVQNVSVLSICDFRED 288 (719)
T ss_dssp HHCCE-ECCCCHHHHTSCEEEEEEEESSSS--------------------------EEEEEEEESSTTEEEEEEEEECSS
T ss_pred cccee-EccCCccCCCCcceEEEeEEeCCC--------------------------eEEEEEeccccCeEEEEEEcccCC
Confidence 20000 000002245688889999999986 45555332 2 3478888
Q ss_pred cCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCee-----EEEeCCCCCEEEE--EecCC--eEEEEE
Q 048801 503 PRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVN-----MIVWSLDNRFVLA--AIMDC--RICVWN 573 (1715)
Q Consensus 503 l~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vt-----slafSPDG~~LaT--gs~DG--tI~IWD 573 (1715)
+.+++...... .....+...+. .++|+|||+.|+. +..+| .|++|+
T Consensus 289 ~~~g~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~ 343 (719)
T 1z68_A 289 WQTWDCPKTQE-------------------------HIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIK 343 (719)
T ss_dssp SSSEECCGGGE-------------------------EEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEES
T ss_pred CCCCceEEEEe-------------------------cccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEE
Confidence 66543211100 00012333444 6899999996654 33444 577888
Q ss_pred CCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeC----CCcEEEEECCC--Cc-eEEEEEc----ccceEEEEEEcCCC
Q 048801 574 AVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGY----DGRTIVWDIWE--GT-PIRIYEI----GRFKLVDGKFSPDG 642 (1715)
Q Consensus 574 l~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~----DGtI~VWDl~t--gk-~l~tl~~----h~~~V~svafSPDG 642 (1715)
+.+++ ...+..+...+..+.++ +++.+++++.. ++.++||.+.. +. ....+.. +...+..+.|+|||
T Consensus 344 ~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg 421 (719)
T 1z68_A 344 DTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYA 421 (719)
T ss_dssp SCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGG
T ss_pred CCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCC
Confidence 87776 55666667778888777 57677766655 58899998754 42 1233332 44567889999999
Q ss_pred CEEEEEe-CC--CeEEEEECCCCccc
Q 048801 643 TSIVLSD-DV--GQIYLLNTGQGESQ 665 (1715)
Q Consensus 643 ~~LAsgs-~D--G~I~IWdl~tGe~~ 665 (1715)
++|+... .. ..+++|++.+|+..
T Consensus 422 ~~l~~~~s~~~~p~~~l~d~~~g~~~ 447 (719)
T 1z68_A 422 KYYALVCYGPGIPISTLHDGRTDQEI 447 (719)
T ss_dssp SSEEEEECCBSSCEEEEECSSSCCEE
T ss_pred CEEEEEcCCCCCCeEEEEECCCCCEE
Confidence 9888543 22 47899999888643
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.83 E-value=8.3e-19 Score=205.84 Aligned_cols=275 Identities=11% Similarity=0.063 Sum_probs=199.7
Q ss_pred CEEEEEeCCCeeEEEECCCCCceEEEeCCCC--CeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCC
Q 048801 298 TLVASASNDFVIRVWRLPDGLPISVLRGHTG--AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPD 375 (1715)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~--~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~ 375 (1715)
.+|++++.++.|.+||+.+++.+..+..... .+.+++|+|+++. ++++++.++.|.+||+.+++.+..+.....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~--l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-- 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRI--AYATVNKSESLVKIDLVTGETLGRIDLSTP-- 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSE--EEEEETTTTEEEEEETTTCCEEEEEECCBT--
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCE--EEEEeCCCCeEEEEECCCCCeEeeEEcCCc--
Confidence 4789999999999999999998888763322 5889999999872 456777789999999998876555433110
Q ss_pred CccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec------------CCCeEEEEeCCCCCccCCCCCceeeee
Q 048801 376 AITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS------------SDTFARVWSACKSSVEDSEQPIHELDV 443 (1715)
Q Consensus 376 ~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs------------~DG~IrVWDl~t~~~~~~~~~~~~l~~ 443 (1715)
..+...+.+++|+|+|++|++++ .++.|.+||+.+++ .+..
T Consensus 78 ------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---------~~~~ 130 (337)
T 1pby_B 78 ------------------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS---------RRKA 130 (337)
T ss_dssp ------------------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE---------EEEE
T ss_pred ------------------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc---------EEEE
Confidence 00122467899999999888885 57999999997643 2333
Q ss_pred ecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccC
Q 048801 444 LSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKV 523 (1715)
Q Consensus 444 l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~ 523 (1715)
+.. ...+.+++|+|++ +.|+++ ++.|.+||+.+++....+..
T Consensus 131 ~~~-~~~~~~~~~s~dg--------------------------~~l~~~--~~~i~~~d~~~~~~~~~~~~--------- 172 (337)
T 1pby_B 131 FEA-PRQITMLAWARDG--------------------------SKLYGL--GRDLHVMDPEAGTLVEDKPI--------- 172 (337)
T ss_dssp EEC-CSSCCCEEECTTS--------------------------SCEEEE--SSSEEEEETTTTEEEEEECS---------
T ss_pred EeC-CCCcceeEECCCC--------------------------CEEEEe--CCeEEEEECCCCcEeeeeec---------
Confidence 332 3457788999987 556666 68999999987553211100
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC------------------------eEEEEECCCCce
Q 048801 524 PPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC------------------------RICVWNAVDGSL 579 (1715)
Q Consensus 524 ~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG------------------------tI~IWDl~sg~~ 579 (1715)
. ..... ++|+|+|..|++++..+ .|.+||+.+++.
T Consensus 173 ~------------------~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 231 (337)
T 1pby_B 173 Q------------------SWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM 231 (337)
T ss_dssp T------------------TTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred c------------------ccCCC---ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence 0 00011 15666666554433221 578999999887
Q ss_pred E-EEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 580 V-HSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 580 l-~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
. ..+..+...+.+++|+| ++++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|||++|++++.++.|.+||
T Consensus 232 ~~~~~~~~~~~~~~~~~s~-dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 232 AMREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred eEeecCCCCCceeeEEECC-CCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 5 23456677889999999 56666666 799999999999998888743 4678999999999999999999999999
Q ss_pred CCCCcccc
Q 048801 659 TGQGESQK 666 (1715)
Q Consensus 659 l~tGe~~k 666 (1715)
+.+++.+.
T Consensus 308 ~~~~~~~~ 315 (337)
T 1pby_B 308 AETLEKKG 315 (337)
T ss_dssp TTTCCEEE
T ss_pred CcCCcEEE
Confidence 99887654
No 148
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.82 E-value=1.3e-18 Score=204.58 Aligned_cols=279 Identities=12% Similarity=0.146 Sum_probs=187.5
Q ss_pred EEEEEeCCCeeEEEECC-CCC--ceEEEeCCCCCeEEEEecCCCCcceEEEEecCC-CcEEEEecC--CCCCcceecCCC
Q 048801 299 LVASASNDFVIRVWRLP-DGL--PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD-GTCRIWDAR--YSQYSPRIYLPK 372 (1715)
Q Consensus 299 lLASGS~DGtIrVWDl~-tg~--~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D-GtVrIWDl~--tg~~l~~i~~~~ 372 (1715)
++++++.|+.|++|++. ++. .+.. ..|...+.+++|+|++. +|++++.+ +.|.+|++. ++.........
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~---~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~- 81 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKR---YLYVGVRPEFRVLAYRIAPDDGALTFAAESA- 81 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSS---EEEEEETTTTEEEEEEECTTTCCEEEEEEEE-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCC---EEEEeecCCCeEEEEEecCCCCceeeccccc-
Confidence 44455789999999995 332 2333 34778899999999998 67777665 999999997 44422111110
Q ss_pred CCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec-CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCe
Q 048801 373 PPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS-SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDV 451 (1715)
Q Consensus 373 ~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs-~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V 451 (1715)
....+.+++|+|+|++|++++ .++.|.+|++..+. ....+..+..+ ..+
T Consensus 82 -----------------------~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~------~~~~~~~~~~~-~~~ 131 (343)
T 1ri6_A 82 -----------------------LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL------PVGVVDVVEGL-DGC 131 (343)
T ss_dssp -----------------------CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTE------EEEEEEEECCC-TTB
T ss_pred -----------------------cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc------cccccccccCC-CCc
Confidence 012478999999999776655 48899999994221 12233333333 358
Q ss_pred eEEEEccCcccccccccccccccccccccCCcccCceEEEEc-CCCeEEEEecCC-CccCcccccccccccccCCCCCCC
Q 048801 452 NYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-RDGSAIIWIPRS-RRSHGKVGRWTRAYHLKVPPPPLP 529 (1715)
Q Consensus 452 ~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-~DGsIrIWDl~t-~~~~~~~~~~~~~~~l~~~~~~~~ 529 (1715)
.+++|+|++ +.|++++ .++.|.+||+.+ +.... .. ..
T Consensus 132 ~~~~~s~dg--------------------------~~l~~~~~~~~~v~~~d~~~~~~~~~-~~--~~------------ 170 (343)
T 1ri6_A 132 HSANISPDN--------------------------RTLWVPALKQDRICLFTVSDDGHLVA-QD--PA------------ 170 (343)
T ss_dssp CCCEECTTS--------------------------SEEEEEEGGGTEEEEEEECTTSCEEE-EE--EE------------
T ss_pred eEEEECCCC--------------------------CEEEEecCCCCEEEEEEecCCCceee-ec--cc------------
Confidence 889999986 4555555 899999999975 32100 00 00
Q ss_pred CCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCC--Cce--EEEEe----cC--CCCeEEEEEccC
Q 048801 530 PQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVD--GSL--VHSLT----GH--SASSYVLDVHPF 598 (1715)
Q Consensus 530 ~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~s--g~~--l~tL~----gH--~~~V~sLafSP~ 598 (1715)
.........+..++|+|+|++|++++ .++.|.+|++.. ++. +..+. ++ ...+.+++|+|+
T Consensus 171 ---------~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 241 (343)
T 1ri6_A 171 ---------EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD 241 (343)
T ss_dssp ---------EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred ---------ccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCC
Confidence 00011234577899999999776555 789999999953 443 33332 11 235678999995
Q ss_pred CCcEEEEEeCCCcEEEEECC--C--CceEEEEEcccceEEEEEEcCCCCEEEEEe-CCCeEEEEEC--CCCc
Q 048801 599 NPRIAMSAGYDGRTIVWDIW--E--GTPIRIYEIGRFKLVDGKFSPDGTSIVLSD-DVGQIYLLNT--GQGE 663 (1715)
Q Consensus 599 dg~lLaSgs~DGtI~VWDl~--t--gk~l~tl~~h~~~V~svafSPDG~~LAsgs-~DG~I~IWdl--~tGe 663 (1715)
+..+++++..++.|.+||+. + .+.+..+..+.. +..++|+|||++|++++ .++.|.+|++ .+|+
T Consensus 242 g~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 242 GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL 312 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred CCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCce
Confidence 55566677789999999998 3 345555654443 88999999999999887 6899999954 4554
No 149
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.82 E-value=4.5e-18 Score=201.56 Aligned_cols=270 Identities=9% Similarity=0.045 Sum_probs=201.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEE-EeCCCeeEEEEC
Q 048801 243 RDAVYCAIFDRSGRFVITGSD-------DRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVAS-ASNDFVIRVWRL 314 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~-------DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLAS-GS~DGtIrVWDl 314 (1715)
...+..++|+|+|++|++++. ++.|.+||..+++.+..+... ..+.+++|+++|++|++ +..++.|.+||+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 456889999999999988874 568999999999998888743 45788999999996555 455799999999
Q ss_pred CCCCceEEEeCCCCC---------eEEEEecCCCCcceEEEEe--cCCCcEEEEecCCCCCcceecCCCCCCCccCccCC
Q 048801 315 PDGLPISVLRGHTGA---------VTAIAFSPRPSAIYQLLSS--SDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNV 383 (1715)
Q Consensus 315 ~tg~~l~~L~gH~~~---------VtsLafSPdg~~~~~LaSg--S~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~ 383 (1715)
.+++.+..+..+... +.+++|+|+++ +++++ +.++.|.+||+.+++....+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~---~l~~~~~~~~~~i~~~d~~~~~~~~~~~~------------- 182 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN---TVYISGIGKESVIWVVDGGNIKLKTAIQN------------- 182 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTT---EEEEEEESSSCEEEEEETTTTEEEEEECC-------------
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCC---EEEEEecCCCceEEEEcCCCCceEEEecC-------------
Confidence 999988888765432 78999999987 44444 4588999999988876544421
Q ss_pred CCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeec----CCCCCeeEEEEccC
Q 048801 384 PSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS----GHENDVNYVQFSGC 459 (1715)
Q Consensus 384 ~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~----gH~~~V~sLafspd 459 (1715)
+...+.+++|+|+|++|++++.++.|.+||+.+++. +..+. ++...+..++|+|+
T Consensus 183 ------------~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~s~d 241 (353)
T 3vgz_A 183 ------------TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKI---------LSRKKLLDDGKEHFFINISLDTA 241 (353)
T ss_dssp ------------CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEE---------EEEEECCCSSSCCCEEEEEEETT
T ss_pred ------------CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeE---------EEEEEcCCCCCCcccceEEECCC
Confidence 122367789999999999999999999999987532 22222 35567888999998
Q ss_pred cccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcc
Q 048801 460 AVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQ 539 (1715)
Q Consensus 460 g~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~ 539 (1715)
+ ...+++...++.|.+||+.+++....+
T Consensus 242 g-------------------------~~l~~~~~~~~~v~~~d~~~~~~~~~~--------------------------- 269 (353)
T 3vgz_A 242 R-------------------------QRAFITDSKAAEVLVVDTRNGNILAKV--------------------------- 269 (353)
T ss_dssp T-------------------------TEEEEEESSSSEEEEEETTTCCEEEEE---------------------------
T ss_pred C-------------------------CEEEEEeCCCCEEEEEECCCCcEEEEE---------------------------
Confidence 7 234555556699999999875432211
Q ss_pred cccCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEe
Q 048801 540 RLLPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG 607 (1715)
Q Consensus 540 ~l~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs 607 (1715)
... ....++|+|+|++|+++. .++.|.+||+.+++.+..+..+. .+.+++|+|++..++++..
T Consensus 270 --~~~--~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 270 --AAP--ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLALSADGKTLYVSVK 333 (353)
T ss_dssp --ECS--SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEEECTTSCEEEEEEE
T ss_pred --EcC--CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEEEcCCCCEEEEEEc
Confidence 000 114589999999766655 68999999999999988887544 6789999995444555443
No 150
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.81 E-value=2.3e-18 Score=225.97 Aligned_cols=314 Identities=9% Similarity=0.001 Sum_probs=208.0
Q ss_pred cccccceeEEEEcCCCC---CeEEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCcEEEEec---CCCCCeEEEE
Q 048801 228 TMVQKMQNIKKLRGHRD---AVYCAIFDRSGRFVITGSDD---------RLVKIWSMETAFCLASCR---GHEGDITDLA 292 (1715)
Q Consensus 228 ~~~~~~k~l~~L~GH~~---~Vt~VafSpDG~~LaTGS~D---------GtIrIWDl~tgk~l~tL~---gHs~~VtsLa 292 (1715)
+...+.+....+.+|.. .|.+++|||||++|++++.+ +.|.+||+.+++. ..+. +|...+.+++
T Consensus 42 ~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~ 120 (723)
T 1xfd_A 42 WNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAG 120 (723)
T ss_dssp BCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCC
T ss_pred EECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccE
Confidence 34455666777888776 49999999999999999864 7888999999876 3343 4555689999
Q ss_pred ECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCe------------------EEEEecCCCCcceEEEEecCCC--
Q 048801 293 VSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAV------------------TAIAFSPRPSAIYQLLSSSDDG-- 352 (1715)
Q Consensus 293 fSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~V------------------tsLafSPdg~~~~~LaSgS~DG-- 352 (1715)
|||||++||+++. +.|++|++.++........+...+ .+++|+|+++ .|++++.|+
T Consensus 121 ~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~---~la~~~~~~~~ 196 (723)
T 1xfd_A 121 WGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT---RLAYAAINDSR 196 (723)
T ss_dssp BCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS---EEEEEEEECTT
T ss_pred ECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCC---EEEEEEECCCc
Confidence 9999999999986 799999999998877766554433 7899999998 677765442
Q ss_pred --------------------------------cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcce
Q 048801 353 --------------------------------TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI 400 (1715)
Q Consensus 353 --------------------------------tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~V 400 (1715)
.|++||+.+++....+..+ .....+...+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~-------------------~~~~~~~~~~ 257 (723)
T 1xfd_A 197 VPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP-------------------DDPRMREYYI 257 (723)
T ss_dssp SCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC-------------------CCGGGSSEEE
T ss_pred cceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCC-------------------ccCCCcccee
Confidence 5777777665532222110 0011135568
Q ss_pred eEEEEccCCCeEEEecC----CCeEEEEeCCCCCccCCCCCceeeeeec-CCCCCe----eEEEEccCcccccccccccc
Q 048801 401 LCCAYNANGTVFVTGSS----DTFARVWSACKSSVEDSEQPIHELDVLS-GHENDV----NYVQFSGCAVASRSAMSDAF 471 (1715)
Q Consensus 401 tslafSpdG~~LatGs~----DG~IrVWDl~t~~~~~~~~~~~~l~~l~-gH~~~V----~sLafspdg~as~~~~~~~~ 471 (1715)
.+++|+|||++|++... +..|++||+.+++. ...+. .+...+ ..++|+|++
T Consensus 258 ~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~---------~~~~~~~~~~~~~~~~~~~~~spdg----------- 317 (723)
T 1xfd_A 258 TMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC---------TKKHEDESEAWLHRQNEEPVFSKDG----------- 317 (723)
T ss_dssp EEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE---------EEEEEEECSSCCCCCCCCCEECTTS-----------
T ss_pred EEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc---------eEEEEeccCCEEeccCCCceEcCCC-----------
Confidence 99999999998876643 36799999987542 22222 223333 378999987
Q ss_pred cccccccccCCcccCceEEE--EcCCC------eEEEEec-CCCccCcccccccccccccCCCCCCCCCCCCCCCccccc
Q 048801 472 KEENVPKFKNSWFCHDNIVT--CSRDG------SAIIWIP-RSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLL 542 (1715)
Q Consensus 472 ~~~~~~~~~~s~~~~~~LaS--gS~DG------sIrIWDl-~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~ 542 (1715)
+.|+. +..++ .|.+||+ .++.. .....+.
T Consensus 318 ---------------~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~---------------------------~~~~~l~ 355 (723)
T 1xfd_A 318 ---------------RKFFFIRAIPQGGRGKFYHITVSSSQPNSSN---------------------------DNIQSIT 355 (723)
T ss_dssp ---------------CSEEEEEEECCSSSSCEEEEEEECSSCCSSS---------------------------CCCCBSC
T ss_pred ---------------CeEEEEEecccCCCcceeEEEEEeccCCCCc---------------------------cceeEee
Confidence 44443 55677 4566662 22110 0011122
Q ss_pred CCCCCeeE-EEeCCCCCEEEEEecC---CeEEEEECCCCc--eEEEEec---CCCCeEEEEEccCCCcEEEEEeCCC--c
Q 048801 543 PTPRGVNM-IVWSLDNRFVLAAIMD---CRICVWNAVDGS--LVHSLTG---HSASSYVLDVHPFNPRIAMSAGYDG--R 611 (1715)
Q Consensus 543 ~h~~~Vts-lafSPDG~~LaTgs~D---GtI~IWDl~sg~--~l~tL~g---H~~~V~sLafSP~dg~lLaSgs~DG--t 611 (1715)
.+...+.. ++|+|||++|+..+.+ +.++||++.... ....+.+ |...+..++|+|++..++++.+..+ .
T Consensus 356 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~ 435 (723)
T 1xfd_A 356 SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPM 435 (723)
T ss_dssp CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCC
T ss_pred cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCe
Confidence 22233444 6999999999876665 789999986432 3444544 6777899999995555555555444 3
Q ss_pred EEEEECCCCceEEEEE
Q 048801 612 TIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 612 I~VWDl~tgk~l~tl~ 627 (1715)
+.+++..++..+..+.
T Consensus 436 ~~~~~~~~~~~~~~~~ 451 (723)
T 1xfd_A 436 VTVHNTTDKKKMFDLE 451 (723)
T ss_dssp EEEEETTTCCEEEEEE
T ss_pred EEEEECCCCCEEEEec
Confidence 4556665665555443
No 151
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=6.7e-19 Score=225.92 Aligned_cols=270 Identities=10% Similarity=0.023 Sum_probs=196.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCcEEEEecCCC-CCeEEEEECCCCCEEEEEeC---CCeeEEEECCC-
Q 048801 243 RDAVYCAIFDRSGRFVITGSD-DRLVKIWSMETAFCLASCRGHE-GDITDLAVSSNNTLVASASN---DFVIRVWRLPD- 316 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~-DGtIrIWDl~tgk~l~tL~gHs-~~VtsLafSpDg~lLASGS~---DGtIrVWDl~t- 316 (1715)
..+|++++|+|||++||+++. ||+++||++.++... .+..|. ..|.+++|+|| ++|++++. +....||.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 457999999999999999887 999999999766654 455555 68999999999 78887775 45566665543
Q ss_pred --CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 317 --GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 317 --g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
+... .+..+ ..+...+|+|+++.. ++++++.++ +.+||+.+++......
T Consensus 99 ~~g~~~-~l~~~-~~~~~~~~s~dg~~~-~~~s~~~~~-~~l~d~~~g~~~~l~~------------------------- 149 (582)
T 3o4h_A 99 RPGEEQ-RLEAV-KPMRILSGVDTGEAV-VFTGATEDR-VALYALDGGGLRELAR------------------------- 149 (582)
T ss_dssp STTCCE-ECTTS-CSBEEEEEEECSSCE-EEEEECSSC-EEEEEEETTEEEEEEE-------------------------
T ss_pred CCCccc-cccCC-CCceeeeeCCCCCeE-EEEecCCCC-ceEEEccCCcEEEeec-------------------------
Confidence 3333 44433 235577899988653 455555555 5599998776432211
Q ss_pred CCCcceeEEEEccCCCeEEEecCC----CeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccc
Q 048801 395 LQSHQILCCAYNANGTVFVTGSSD----TFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDA 470 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~~LatGs~D----G~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~ 470 (1715)
+. ..+++|+|||++|++++.+ +.|++||+.+++ ...+..|...+..++|+|++
T Consensus 150 -~~--~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~----------~~~l~~~~~~~~~~~~SpDG---------- 206 (582)
T 3o4h_A 150 -LP--GFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG----------LRVFDSGEGSFSSASISPGM---------- 206 (582)
T ss_dssp -ES--SCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC----------CEEECCSSCEEEEEEECTTS----------
T ss_pred -CC--CceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC----------ceEeecCCCccccceECCCC----------
Confidence 01 1689999999999988776 789999998753 23567888889999999997
Q ss_pred ccccccccccCCcccCceEEEEcCCC--eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCe
Q 048801 471 FKEENVPKFKNSWFCHDNIVTCSRDG--SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGV 548 (1715)
Q Consensus 471 ~~~~~~~~~~~s~~~~~~LaSgS~DG--sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~V 548 (1715)
+.|+++..+| .|.+||+.+++.. .+..+...+
T Consensus 207 ----------------~~l~~~~~~~~~~i~~~d~~~~~~~------------------------------~~~~~~~~~ 240 (582)
T 3o4h_A 207 ----------------KVTAGLETAREARLVTVDPRDGSVE------------------------------DLELPSKDF 240 (582)
T ss_dssp ----------------CEEEEEECSSCEEEEEECTTTCCEE------------------------------ECCCSCSHH
T ss_pred ----------------CEEEEccCCCeeEEEEEcCCCCcEE------------------------------EccCCCcCh
Confidence 6788888888 8999999865422 112233334
Q ss_pred eEEE--------eCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCC---cEEEEEC
Q 048801 549 NMIV--------WSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDG---RTIVWDI 617 (1715)
Q Consensus 549 tsla--------fSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DG---tI~VWDl 617 (1715)
..++ |+|||.++++++.+++++||++ |+.+. .+.+.|.+++|+ +++++++++.+. .|.+|+.
T Consensus 241 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s--dg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 241 SSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW--RGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp HHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE--TTEEEEEEEETTEEEEEEEETT
T ss_pred hhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec--CCEEEEEEcCCCCCCeEEEEcC
Confidence 4444 9999999999999999999999 76554 345678899998 567777777764 4667776
Q ss_pred CC
Q 048801 618 WE 619 (1715)
Q Consensus 618 ~t 619 (1715)
..
T Consensus 314 ~~ 315 (582)
T 3o4h_A 314 GE 315 (582)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.79 E-value=1.8e-17 Score=195.70 Aligned_cols=286 Identities=7% Similarity=-0.036 Sum_probs=195.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCC-CCeEEEEECCCCCEEE-EEeCCCeeEEEECCCCCceEEEeC
Q 048801 248 CAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHE-GDITDLAVSSNNTLVA-SASNDFVIRVWRLPDGLPISVLRG 325 (1715)
Q Consensus 248 ~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs-~~VtsLafSpDg~lLA-SGS~DGtIrVWDl~tg~~l~~L~g 325 (1715)
.+++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45688899999999999999999999999988887543 2578999999998665 555689999999999988877763
Q ss_pred CC------CCeEEEEecCCCCcceEEEEecCC------------CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 326 HT------GAVTAIAFSPRPSAIYQLLSSSDD------------GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 326 H~------~~VtsLafSPdg~~~~~LaSgS~D------------GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
+. ..+.+++|+|+++ +|++++.+ +.|.+||+.+++....+..
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~---~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~----------------- 143 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGK---EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT----------------- 143 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSS---EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE-----------------
T ss_pred ccccccccccccceEECCCCC---EEEEEcccccccccccccCCCeEEEEECCCccccceeee-----------------
Confidence 32 2378999999998 67777654 8999999987553221110
Q ss_pred CCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCC-C-----------------
Q 048801 388 GPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE-N----------------- 449 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~-~----------------- 449 (1715)
..+...+.+++|+|+|+ +++++ +.|.+||+.+++. +..+..+. .
T Consensus 144 ------~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (349)
T 1jmx_B 144 ------FPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKY---------TVALPLRNWNRKGYSAPDVLYFWPHQS 205 (349)
T ss_dssp ------EECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCE---------EEEECSTTCCCTTBCCCBCCCCCCCCC
T ss_pred ------ccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCce---------eccccccccCCccccCccceeeecCCC
Confidence 00122478899999999 55544 3499999987643 11221111 0
Q ss_pred ------CeeEEEEccCcccccccccccccccccccccCCc-ccCceEEEEcCCCeEEEEecCCCccCccccccccccccc
Q 048801 450 ------DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSW-FCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLK 522 (1715)
Q Consensus 450 ------~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~-~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~ 522 (1715)
....+++++++... ...+ ....++.....++.+.+|++..
T Consensus 206 ~~~~~~~~~~~~~~~d~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 252 (349)
T 1jmx_B 206 PRHEFSMLYTIARFKDDKQD----------------PATADLLYGYLSVDLKTGKTHTQEFAD----------------- 252 (349)
T ss_dssp TTCEEEEEEEEEEC-----------------------CCCEEEEEEEEEETTTCCEEEEEEEE-----------------
T ss_pred cceeEEeeeeeeecCCCcCC----------------ccccccceeEEEEeccCCcEEeccccc-----------------
Confidence 11223333221000 0000 0001222333444555544321
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCc
Q 048801 523 VPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPR 601 (1715)
Q Consensus 523 ~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~ 601 (1715)
+...+..++|+| +|++|+++ ++.|.+||+.+++.+..+..+ ..+.+++|+|+ +.
T Consensus 253 ---------------------~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~d-g~ 307 (349)
T 1jmx_B 253 ---------------------LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKK-GD 307 (349)
T ss_dssp ---------------------CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSS-SS
T ss_pred ---------------------CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCC-CC
Confidence 234578899999 99999988 889999999999988887643 34679999994 44
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEEcc
Q 048801 602 IAMSAGYDGRTIVWDIWEGTPIRIYEIG 629 (1715)
Q Consensus 602 lLaSgs~DGtI~VWDl~tgk~l~tl~~h 629 (1715)
.|++++.++.|.+||+.+++.+..+..+
T Consensus 308 ~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 308 KLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp CEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEEEecCCCeEEEEeccccceeeeeecC
Confidence 4455788899999999999998888744
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.78 E-value=3.8e-17 Score=194.64 Aligned_cols=291 Identities=12% Similarity=0.131 Sum_probs=187.5
Q ss_pred CCcEEEEeC--CCCcEEE-EecCCCCCeEEEEECCCCCEEEEEeC---CCeeEEEECCCCC--ceEEEeCCCCCeEEEEe
Q 048801 264 DRLVKIWSM--ETAFCLA-SCRGHEGDITDLAVSSNNTLVASASN---DFVIRVWRLPDGL--PISVLRGHTGAVTAIAF 335 (1715)
Q Consensus 264 DGtIrIWDl--~tgk~l~-tL~gHs~~VtsLafSpDg~lLASGS~---DGtIrVWDl~tg~--~l~~L~gH~~~VtsLaf 335 (1715)
++.|.+|.+ .+++... ....+...+..++|+|||+ |++++. ++.|.+|++.++. .+..+..+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 456777765 4565533 3344567788899999999 555544 6899999997765 34444557788999999
Q ss_pred cCCCCcceEEEEec-CCCcEEEEecCCCCCcceec-CCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEE
Q 048801 336 SPRPSAIYQLLSSS-DDGTCRIWDARYSQYSPRIY-LPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFV 413 (1715)
Q Consensus 336 SPdg~~~~~LaSgS-~DGtVrIWDl~tg~~l~~i~-~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~La 413 (1715)
+|++. +|++++ .++.|.+|++........+. .... ...+. .......+.+++|+|+|++++
T Consensus 94 spdg~---~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~------------~~~p~--~~~~~~~~~~~~~spdg~l~v 156 (347)
T 3hfq_A 94 DEARQ---LVYSANYHKGTAEVMKIAADGALTLTDTVQHS------------GHGPR--PEQDGSHIHYTDLTPDNRLAV 156 (347)
T ss_dssp ETTTT---EEEEEETTTTEEEEEEECTTSCEEEEEEEECC------------CCCSS--TTCSSCCEEEEEECTTSCEEE
T ss_pred CCCCC---EEEEEeCCCCEEEEEEeCCCCCeeecceeecC------------CCCCC--ccccCCCceEEEECCCCcEEE
Confidence 99998 566665 78999999996322111111 1000 00000 112344588999999999777
Q ss_pred EecCCCeEEEEeCC-CCCccCCCCCceeeeeecCC-CCCeeEEEEccCcccccccccccccccccccccCCcccCceEEE
Q 048801 414 TGSSDTFARVWSAC-KSSVEDSEQPIHELDVLSGH-ENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVT 491 (1715)
Q Consensus 414 tGs~DG~IrVWDl~-t~~~~~~~~~~~~l~~l~gH-~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaS 491 (1715)
++..++.|.+|++. ++. ...+..+..+ ...+..++|+|++ ...+++
T Consensus 157 ~~~~~~~v~~~~~~~~g~-------~~~~~~~~~~~g~~p~~~~~spdg-------------------------~~l~v~ 204 (347)
T 3hfq_A 157 IDLGSDKVYVYNVSDAGQ-------LSEQSVLTMEAGFGPRHLVFSPDG-------------------------QYAFLA 204 (347)
T ss_dssp EETTTTEEEEEEECTTSC-------EEEEEEEECCTTCCEEEEEECTTS-------------------------SEEEEE
T ss_pred EeCCCCEEEEEEECCCCc-------EEEeeeEEcCCCCCCceEEECCCC-------------------------CEEEEE
Confidence 77778999999997 322 1122222222 2367789999987 125566
Q ss_pred EcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEE-EEecCCeEE
Q 048801 492 CSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL-AAIMDCRIC 570 (1715)
Q Consensus 492 gS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~La-Tgs~DGtI~ 570 (1715)
+..++.|.+|++.... + .+.....+...+ . -......+..++|+|||++|+ ++..++.|.
T Consensus 205 ~~~~~~v~v~~~~~~~--g---~~~~~~~~~~~~---------~-----~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~ 265 (347)
T 3hfq_A 205 GELSSQIASLKYDTQT--G---AFTQLGIVKTIP---------A-----DYTAHNGAAAIRLSHDGHFLYVSNRGYNTLA 265 (347)
T ss_dssp ETTTTEEEEEEEETTT--T---EEEEEEEEESSC---------T-----TCCSCCEEEEEEECTTSCEEEEEEETTTEEE
T ss_pred eCCCCEEEEEEecCCC--C---ceEEeeeeeecC---------C-----CCCCCCcceeEEECCCCCEEEEEeCCCCEEE
Confidence 7788999999987411 0 000000000000 0 001124588999999999874 555689999
Q ss_pred EEECCC---CceEEEEecCCCCeEEEEEccCCCcEEEEEe-CCCcEEEE--ECCCCceEE
Q 048801 571 VWNAVD---GSLVHSLTGHSASSYVLDVHPFNPRIAMSAG-YDGRTIVW--DIWEGTPIR 624 (1715)
Q Consensus 571 IWDl~s---g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs-~DGtI~VW--Dl~tgk~l~ 624 (1715)
+|++.. .+.+..+..+...+.+++|+| ++++|++++ .++.|.+| |..+|+...
T Consensus 266 v~~~~~~g~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 266 VFAVTADGHLTLIQQISTEGDFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp EEEECGGGCEEEEEEEECSSSCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEECCCCcEEEeEEEecCCCCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 999972 355666777777789999999 555555555 56899999 555676553
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.78 E-value=3.1e-18 Score=219.74 Aligned_cols=269 Identities=12% Similarity=0.029 Sum_probs=197.8
Q ss_pred CCCeEEEEECCCCCEEEEEeC-CCeeEEEECCCCCceEEEeCCC-CCeEEEEecCCCCcceEEEEecC---CCcEEEEec
Q 048801 285 EGDITDLAVSSNNTLVASASN-DFVIRVWRLPDGLPISVLRGHT-GAVTAIAFSPRPSAIYQLLSSSD---DGTCRIWDA 359 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~-DGtIrVWDl~tg~~l~~L~gH~-~~VtsLafSPdg~~~~~LaSgS~---DGtVrIWDl 359 (1715)
..+|++++|+|||++||+++. ||++.||++.++.. ..+..|. ..+.+++|+|+ . .+++++. +....+|.+
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~---~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-R---VILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-E---EEEEEECSTTSCCEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-e---EEEEeccCCCCcceEEEEE
Confidence 557999999999999999887 99999999966554 4555555 68999999998 4 6666654 555677665
Q ss_pred CC--CCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCC--eEEEecCCCeEEEEeCCCCCccCCC
Q 048801 360 RY--SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT--VFVTGSSDTFARVWSACKSSVEDSE 435 (1715)
Q Consensus 360 ~t--g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~--~LatGs~DG~IrVWDl~t~~~~~~~ 435 (1715)
.. ......+. ....+...+|+|+|+ .+++++. +.+.+||+.+++.
T Consensus 96 ~~~~~g~~~~l~--------------------------~~~~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g~~---- 144 (582)
T 3o4h_A 96 NTSRPGEEQRLE--------------------------AVKPMRILSGVDTGEAVVFTGATE-DRVALYALDGGGL---- 144 (582)
T ss_dssp ETTSTTCCEECT--------------------------TSCSBEEEEEEECSSCEEEEEECS-SCEEEEEEETTEE----
T ss_pred eccCCCcccccc--------------------------CCCCceeeeeCCCCCeEEEEecCC-CCceEEEccCCcE----
Confidence 43 11111110 011234567888775 4444444 4455999976532
Q ss_pred CCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC----CeEEEEecCCCccCcc
Q 048801 436 QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD----GSAIIWIPRSRRSHGK 511 (1715)
Q Consensus 436 ~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D----GsIrIWDl~t~~~~~~ 511 (1715)
..+..+.. .+++|+|+| +.|++++.+ +.|.+||+.+++
T Consensus 145 ------~~l~~~~~--~~~~~spDG--------------------------~~la~~~~~~~~~~~i~~~d~~~g~---- 186 (582)
T 3o4h_A 145 ------RELARLPG--FGFVSDIRG--------------------------DLIAGLGFFGGGRVSLFTSNLSSGG---- 186 (582)
T ss_dssp ------EEEEEESS--CEEEEEEET--------------------------TEEEEEEEEETTEEEEEEEETTTCC----
T ss_pred ------EEeecCCC--ceEEECCCC--------------------------CEEEEEEEcCCCCeEEEEEcCCCCC----
Confidence 12222222 789999987 788877776 789999987643
Q ss_pred cccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC--eEEEEECCCCceEEEEecCCCC
Q 048801 512 VGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC--RICVWNAVDGSLVHSLTGHSAS 589 (1715)
Q Consensus 512 ~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG--tI~IWDl~sg~~l~tL~gH~~~ 589 (1715)
...+..+...+..++|||||++|+++..++ .|++||+.+++.. .+.+|...
T Consensus 187 --------------------------~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~ 239 (582)
T 3o4h_A 187 --------------------------LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKD 239 (582)
T ss_dssp --------------------------CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSH
T ss_pred --------------------------ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcC
Confidence 223455667789999999999999888888 8999999999888 77888877
Q ss_pred eEEEE--------EccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCC---eEEEEE
Q 048801 590 SYVLD--------VHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVG---QIYLLN 658 (1715)
Q Consensus 590 V~sLa--------fSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG---~I~IWd 658 (1715)
+..++ |+|++ .++++++.||+++||++ |+.+. ...+.+.+++|+ ||+++++++.+. .|++|+
T Consensus 240 ~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 240 FSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp HHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred hhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 77777 99955 99999999999999999 77655 234678899999 999999887764 577777
Q ss_pred CCC
Q 048801 659 TGQ 661 (1715)
Q Consensus 659 l~t 661 (1715)
+..
T Consensus 313 ~~~ 315 (582)
T 3o4h_A 313 SGE 315 (582)
T ss_dssp TCC
T ss_pred CCC
Confidence 654
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=226.55 Aligned_cols=315 Identities=11% Similarity=0.012 Sum_probs=208.3
Q ss_pred EEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCC---CeEEEEecCCCCcceEEEEecC---------CCcEEEE
Q 048801 290 DLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTG---AVTAIAFSPRPSAIYQLLSSSD---------DGTCRIW 357 (1715)
Q Consensus 290 sLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~---~VtsLafSPdg~~~~~LaSgS~---------DGtVrIW 357 (1715)
+++|+|||+++++ +.|++|++||+.+++....+.+|.. .|.+++|+|+++ +|++++. ++.|++|
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~---~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQ---FVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSS---EEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCC---eEEEEecCceeEEeecceEEEEE
Confidence 6899999966555 4699999999999998777765544 489999999998 6777765 7899999
Q ss_pred ecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCC
Q 048801 358 DARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQP 437 (1715)
Q Consensus 358 Dl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~ 437 (1715)
|+.+++.+....+ ...+.+++|||||+.|+.+. ++.|++|++.++........
T Consensus 96 d~~~g~~~~~~~l--------------------------~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~ 148 (719)
T 1z68_A 96 DLSNGEFVRGNEL--------------------------PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFN 148 (719)
T ss_dssp ETTTTEECCSSCC--------------------------CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCC
T ss_pred ECCCCccccceec--------------------------CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecC
Confidence 9988764211100 12378899999999999885 78999999987643111000
Q ss_pred ceeeeeecCCCCC---------eeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC------------
Q 048801 438 IHELDVLSGHEND---------VNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG------------ 496 (1715)
Q Consensus 438 ~~~l~~l~gH~~~---------V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG------------ 496 (1715)
......+.++... ..+++|+|++ +.|++++.|.
T Consensus 149 ~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG--------------------------~~la~~~~d~~~~~~~~~~~~~ 202 (719)
T 1z68_A 149 GRENKIFNGIPDWVYEEEMLATKYALWWSPNG--------------------------KFLAYAEFNDTDIPVIAYSYYG 202 (719)
T ss_dssp CBTTTEEESSCCHHHHHHTTCSSCCEEECTTS--------------------------SEEEEEEEECTTSCEEEEEECC
T ss_pred CCcCCeEcccccceeeeecccCcccEEECCCC--------------------------CEEEEEEECCCCCceEEeeccC
Confidence 1111112233222 2589999997 5566555431
Q ss_pred ----------------------eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC
Q 048801 497 ----------------------SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS 554 (1715)
Q Consensus 497 ----------------------sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS 554 (1715)
.|.+||+.++..... ..+ .....+..+...+..++||
T Consensus 203 ~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~-------~~~--------------~~~~~~~~~~~~~~~~~~S 261 (719)
T 1z68_A 203 DEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGP-------QEV--------------PVPAMIASSDYYFSWLTWV 261 (719)
T ss_dssp SSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCC-------EEC--------------CCCHHHHTSCEEEEEEEES
T ss_pred CCCCccceeecCCCCCCCCCeeEEEEEECCCCCccce-------eEc--------------cCCccCCCCcceEEEeEEe
Confidence 677888776431100 000 0001234567789999999
Q ss_pred CCCCEEEEEecC----CeEEEEE----CCCCceEEEE----ecCCCCeE-----EEEEccCCCcEEE-EEeCCC--cEEE
Q 048801 555 LDNRFVLAAIMD----CRICVWN----AVDGSLVHSL----TGHSASSY-----VLDVHPFNPRIAM-SAGYDG--RTIV 614 (1715)
Q Consensus 555 PDG~~LaTgs~D----GtI~IWD----l~sg~~l~tL----~gH~~~V~-----sLafSP~dg~lLa-Sgs~DG--tI~V 614 (1715)
||++++++.... ..|++|| +.++++...+ .+|...+. .+.|+|++..+++ ++..+| .|.+
T Consensus 262 pD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~ 341 (719)
T 1z68_A 262 TDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHY 341 (719)
T ss_dssp SSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEE
T ss_pred CCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEE
Confidence 998877775433 2489999 8887766555 46777776 8899996555544 444555 5777
Q ss_pred EECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCC-----CeEEEEECCC--Cc----cccc-------cccceeecC
Q 048801 615 WDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDV-----GQIYLLNTGQ--GE----SQKD-------AKYDQFFLG 676 (1715)
Q Consensus 615 WDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~D-----G~I~IWdl~t--Ge----~~k~-------~~~~~~fs~ 676 (1715)
||+.+++ ...+..+...+..+.++ +|+.|+..+.+ +.+.||.+.. |. ++.. ......|++
T Consensus 342 ~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~ 419 (719)
T 1z68_A 342 IKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSD 419 (719)
T ss_dssp ESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECG
T ss_pred EECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECC
Confidence 7887776 44555555667788778 88888877654 7778887643 42 1111 123456888
Q ss_pred CCccEEEc
Q 048801 677 DYRPLIRD 684 (1715)
Q Consensus 677 D~r~L~~d 684 (1715)
|++.|++.
T Consensus 420 dg~~l~~~ 427 (719)
T 1z68_A 420 YAKYYALV 427 (719)
T ss_dssp GGSSEEEE
T ss_pred CCCEEEEE
Confidence 88887754
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.77 E-value=3.4e-17 Score=193.36 Aligned_cols=308 Identities=9% Similarity=0.002 Sum_probs=196.2
Q ss_pred EEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCC-CCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCccee
Q 048801 290 DLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHT-GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRI 368 (1715)
Q Consensus 290 sLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~-~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i 368 (1715)
.+++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+|++.. .++++..++.|.+||+.+++....+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~--~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRT--AYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSE--EEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCE--EEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 45788899999999999999999999999888887543 25789999999872 4556678899999999988765544
Q ss_pred cCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC------------CeEEEEeCCCCCccCCCC
Q 048801 369 YLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD------------TFARVWSACKSSVEDSEQ 436 (1715)
Q Consensus 369 ~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D------------G~IrVWDl~t~~~~~~~~ 436 (1715)
...... ......+.+++|+|+|++|++++.+ +.|.+||+.+++.
T Consensus 82 ~~~~~~-------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----- 137 (349)
T 1jmx_B 82 NLSSVP-------------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE----- 137 (349)
T ss_dssp ESCCST-------------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-----
T ss_pred Eccccc-------------------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc-----
Confidence 321100 0012336789999999999988865 8999999976432
Q ss_pred CceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccc
Q 048801 437 PIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWT 516 (1715)
Q Consensus 437 ~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~ 516 (1715)
...+..+.. ...+.+++|+|++ . +++++ +.|.+||+.+++....+...
T Consensus 138 -~~~~~~~~~-~~~~~~~~~s~dg--------------------------~-l~~~~--~~i~~~d~~~~~~~~~~~~~- 185 (349)
T 1jmx_B 138 -AKPVRTFPM-PRQVYLMRAADDG--------------------------S-LYVAG--PDIYKMDVKTGKYTVALPLR- 185 (349)
T ss_dssp -BCCSEEEEC-CSSCCCEEECTTS--------------------------C-EEEES--SSEEEECTTTCCEEEEECST-
T ss_pred -cceeeeccC-CCcccceeECCCC--------------------------c-EEEcc--CcEEEEeCCCCceecccccc-
Confidence 112223332 3368889999987 4 44444 34999999876543221100
Q ss_pred ccccccCCCCCCCCCCCCCCCcccccCCC----CCeeEEEeCCCCCEEEEEecC-CeEEEEECCCCceE-EEEecCCCCe
Q 048801 517 RAYHLKVPPPPLPPQPPRGGPRQRLLPTP----RGVNMIVWSLDNRFVLAAIMD-CRICVWNAVDGSLV-HSLTGHSASS 590 (1715)
Q Consensus 517 ~~~~l~~~~~~~~~~~~~g~~~~~l~~h~----~~VtslafSPDG~~LaTgs~D-GtI~IWDl~sg~~l-~tL~gH~~~V 590 (1715)
....+.. ........ -..... .....+++++++......... ..+..++..+++.. ..+..+...+
T Consensus 186 ------~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (349)
T 1jmx_B 186 ------NWNRKGY-SAPDVLYF-WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY 257 (349)
T ss_dssp ------TCCCTTB-CCCBCCCC-CCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred ------ccCCccc-cCccceee-ecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcc
Confidence 0000000 00000000 000000 023456777665322111111 11223555554421 1223466678
Q ss_pred EEEEEcc-CCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccccc
Q 048801 591 YVLDVHP-FNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQKD 667 (1715)
Q Consensus 591 ~sLafSP-~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k~ 667 (1715)
.+++|+| ++. +++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|||++|++++.++.|.+||+.+++.+..
T Consensus 258 ~~~~~sp~dg~-~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~ 331 (349)
T 1jmx_B 258 FTGLRSPKDPN-QIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKN 331 (349)
T ss_dssp EEEEECSSCTT-EEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEE
T ss_pred eeeEecCCCCC-EEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccceeee
Confidence 9999999 554 55555 889999999999998888743 4577899999999999998899999999998876543
No 157
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.76 E-value=4e-17 Score=216.11 Aligned_cols=338 Identities=10% Similarity=0.005 Sum_probs=219.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCC-----eEEEEECCCCCEEEEEeCC---------Cee
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGD-----ITDLAVSSNNTLVASASND---------FVI 309 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~-----VtsLafSpDg~lLASGS~D---------GtI 309 (1715)
....+++|+|||.+|+++ ||.|++||+.++++...+.+|... ...++|||||++|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 345688999999999986 899999999999998888887643 2447899999999999876 566
Q ss_pred EEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCC
Q 048801 310 RVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGP 389 (1715)
Q Consensus 310 rVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~ 389 (1715)
.+||+.+++.. .+..|.+.+..++|||+|+ .|+.+ .++.|++|++.++.... +........+
T Consensus 95 ~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~---~la~~-~~~~i~~~~~~~~~~~~-lt~~g~~~~~------------ 156 (740)
T 4a5s_A 95 DIYDLNKRQLI-TEERIPNNTQWVTWSPVGH---KLAYV-WNNDIYVKIEPNLPSYR-ITWTGKEDII------------ 156 (740)
T ss_dssp EEEETTTTEEC-CSSCCCTTEEEEEECSSTT---CEEEE-ETTEEEEESSTTSCCEE-CCSCCBTTTE------------
T ss_pred EEEECCCCcEE-EcccCCCcceeeEECCCCC---EEEEE-ECCeEEEEECCCCceEE-EcCCCCccce------------
Confidence 79999998754 4667888999999999998 56666 46899999998876432 2211110000
Q ss_pred CCCCCCCC---------cceeEEEEccCCCeEEEecCCC------------------------------------eEEEE
Q 048801 390 SSSNGLQS---------HQILCCAYNANGTVFVTGSSDT------------------------------------FARVW 424 (1715)
Q Consensus 390 ~~~~~~h~---------~~VtslafSpdG~~LatGs~DG------------------------------------~IrVW 424 (1715)
..++. .....++|||||+.||.++.|. .|++|
T Consensus 157 ---~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~ 233 (740)
T 4a5s_A 157 ---YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV 233 (740)
T ss_dssp ---EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred ---ecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence 00011 1234689999999998875321 46677
Q ss_pred eCCC---CCccCCCCCceeeeeec------CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEE---
Q 048801 425 SACK---SSVEDSEQPIHELDVLS------GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTC--- 492 (1715)
Q Consensus 425 Dl~t---~~~~~~~~~~~~l~~l~------gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSg--- 492 (1715)
|+.+ +.. .. ...+. +|...+..++|+|++ +.++..
T Consensus 234 d~~~~~~~~~------~~-~~~l~~~~~~~~~~~~~~~~~wspdg--------------------------~~~~~~~~r 280 (740)
T 4a5s_A 234 NTDSLSSVTN------AT-SIQITAPASMLIGDHYLCDVTWATQE--------------------------RISLQWLRR 280 (740)
T ss_dssp ETTSCCSSSC------CC-EEEECCCHHHHTSCEEEEEEEEEETT--------------------------EEEEEEEES
T ss_pred ECCCCCCCCc------ce-EEEecCCccCCCCCeEEEEEEEeCCC--------------------------eEEEEEeCC
Confidence 7765 310 01 11121 377788999999987 444433
Q ss_pred -cCCCeEEEEecCCCc----cCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCC-----eeEEEeCCCCCEEE-
Q 048801 493 -SRDGSAIIWIPRSRR----SHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG-----VNMIVWSLDNRFVL- 561 (1715)
Q Consensus 493 -S~DGsIrIWDl~t~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~-----VtslafSPDG~~La- 561 (1715)
+.+..|.+||+.+++ +...... ....+... ...++|+|||+.|+
T Consensus 281 ~~~~~~i~~~d~~tg~~~~~~~~~~~l-------------------------~~~~~~~~v~~~~~~~p~fspDG~~l~~ 335 (740)
T 4a5s_A 281 IQNYSVMDICDYDESSGRWNCLVARQH-------------------------IEMSTTGWVGRFRPSEPHFTLDGNSFYK 335 (740)
T ss_dssp STTEEEEEEEEEETTTTEEEECGGGCE-------------------------EEECSSSCSSSSSCCCCEECTTSSEEEE
T ss_pred CCCEEEEEEEECCCCccccceeEEEEe-------------------------eeccCCceEccCcCCCceEcCCCCEEEE
Confidence 233479999998754 1100000 00112222 23578999999887
Q ss_pred EEec-C--CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeC----CCcEEEE--ECCCCceEEEEEc----
Q 048801 562 AAIM-D--CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGY----DGRTIVW--DIWEGTPIRIYEI---- 628 (1715)
Q Consensus 562 Tgs~-D--GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~----DGtI~VW--Dl~tgk~l~tl~~---- 628 (1715)
..+. + ..|++|++.+++.. .+......|..+.. ++++.+++++.. .+...|| ++..+.....+..
T Consensus 336 ~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~ 413 (740)
T 4a5s_A 336 IISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNP 413 (740)
T ss_dssp EEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTST
T ss_pred EEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCC
Confidence 6653 3 46899998776654 44444555665543 446666666655 2344455 5544333223331
Q ss_pred ccceEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCcc
Q 048801 629 GRFKLVDGKFSPDGTSIVLSDDV---GQIYLLNTGQGES 664 (1715)
Q Consensus 629 h~~~V~svafSPDG~~LAsgs~D---G~I~IWdl~tGe~ 664 (1715)
....+..+.|||||++++..... ..+.++++.+++.
T Consensus 414 ~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~ 452 (740)
T 4a5s_A 414 ERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKG 452 (740)
T ss_dssp TTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEE
T ss_pred CCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcE
Confidence 13567889999999988865443 4788889877754
No 158
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.76 E-value=4.8e-17 Score=196.11 Aligned_cols=298 Identities=10% Similarity=0.003 Sum_probs=201.4
Q ss_pred EEEEeCCCCcEEEEecCCCCCeEE-----EEECCCCCEEEEEeC-CC--eeEEEECCCCCceEEEeCCCCCeEEEEecCC
Q 048801 267 VKIWSMETAFCLASCRGHEGDITD-----LAVSSNNTLVASASN-DF--VIRVWRLPDGLPISVLRGHTGAVTAIAFSPR 338 (1715)
Q Consensus 267 IrIWDl~tgk~l~tL~gHs~~Vts-----LafSpDg~lLASGS~-DG--tIrVWDl~tg~~l~~L~gH~~~VtsLafSPd 338 (1715)
...++..++..+..+..|...... ++|||||++|+.++. +| .|.+||+.+++......++...+..++|+|+
T Consensus 12 ~~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd 91 (388)
T 3pe7_A 12 DTYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD 91 (388)
T ss_dssp EEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT
T ss_pred eEEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC
Confidence 344577889899999988877766 899999999999887 66 4888899988877766667666667889999
Q ss_pred CCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeE--EEEccCCCeEEE--
Q 048801 339 PSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILC--CAYNANGTVFVT-- 414 (1715)
Q Consensus 339 g~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vts--lafSpdG~~Lat-- 414 (1715)
++ .|+.++.++.|++||+.+++.......+ ...+.. ..++++|.+++.
T Consensus 92 g~---~l~~~~~~~~l~~~d~~~g~~~~~~~~~-------------------------~~~~~~~~~~~~~dg~~l~~~~ 143 (388)
T 3pe7_A 92 DD---ALFYVKDGRNLMRVDLATLEENVVYQVP-------------------------AEWVGYGTWVANSDCTKLVGIE 143 (388)
T ss_dssp SS---EEEEEETTTEEEEEETTTCCEEEEEECC-------------------------TTEEEEEEEEECTTSSEEEEEE
T ss_pred CC---EEEEEeCCCeEEEEECCCCcceeeeech-------------------------hhcccccceeECCCCCeecccc
Confidence 98 7888888899999999988654332211 112222 345899988874
Q ss_pred --------------------ecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEcc-Ccccccccccccccc
Q 048801 415 --------------------GSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSG-CAVASRSAMSDAFKE 473 (1715)
Q Consensus 415 --------------------Gs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafsp-dg~as~~~~~~~~~~ 473 (1715)
...++.|.+||+.+++ ...+..+...+..++|+| ++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~----------~~~l~~~~~~~~~~~~sp~dg------------- 200 (388)
T 3pe7_A 144 IRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE----------STVILQENQWLGHPIYRPYDD------------- 200 (388)
T ss_dssp EEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC----------EEEEEEESSCEEEEEEETTEE-------------
T ss_pred ccCcccccccccchhhhhhccCCcceEEEEECCCCc----------eEEeecCCccccccEECCCCC-------------
Confidence 2245789999998753 233445566789999999 87
Q ss_pred cccccccCCcccCceEEEEcCC------CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC--
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRD------GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP-- 545 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~D------GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~-- 545 (1715)
..|+.++.+ ..|.++++.++. ...+..+.
T Consensus 201 -------------~~l~~~~~~~~~~~~~~l~~~d~~~~~------------------------------~~~l~~~~~~ 237 (388)
T 3pe7_A 201 -------------STVAFCHEGPHDLVDARMWLINEDGTN------------------------------MRKVKTHAEG 237 (388)
T ss_dssp -------------EEEEEEECSCTTTSSCSEEEEETTSCC------------------------------CEESCCCCTT
T ss_pred -------------CEEEEEEecCCCCCcceEEEEeCCCCc------------------------------eEEeeeCCCC
Confidence 566655543 367777765422 11122222
Q ss_pred CCeeEEEeCCCCCEEEEEec-CC----eEEEEECCCCceEE--EEecCCCC---eEEEEEccCCCcEEEEE--------e
Q 048801 546 RGVNMIVWSLDNRFVLAAIM-DC----RICVWNAVDGSLVH--SLTGHSAS---SYVLDVHPFNPRIAMSA--------G 607 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~-DG----tI~IWDl~sg~~l~--tL~gH~~~---V~sLafSP~dg~lLaSg--------s 607 (1715)
..+..++|||||+.|+..+. ++ .|++||+.+++... .+.++... ...+.|+|++..++++. .
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 317 (388)
T 3pe7_A 238 ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIE 317 (388)
T ss_dssp EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------C
T ss_pred cccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccC
Confidence 24778899999998866543 22 49999999987533 33331100 11236899555555443 4
Q ss_pred CCCcEEEEECCCCceEEEEEcccc-----------eEEEEEEcCCCCEEEEEe-CCCeEEEEEC
Q 048801 608 YDGRTIVWDIWEGTPIRIYEIGRF-----------KLVDGKFSPDGTSIVLSD-DVGQIYLLNT 659 (1715)
Q Consensus 608 ~DGtI~VWDl~tgk~l~tl~~h~~-----------~V~svafSPDG~~LAsgs-~DG~I~IWdl 659 (1715)
.+..|++||+.+++.. .+..+.. .+..++|||||+.|+.++ .+|...||.+
T Consensus 318 ~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 318 NDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp CCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 5678999999887654 4444544 467889999999988665 4665555543
No 159
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.75 E-value=1.8e-16 Score=188.73 Aligned_cols=276 Identities=11% Similarity=0.054 Sum_probs=182.3
Q ss_pred CCeeEEEECC--CCCceE-EEeCCCCCeEEEEecCCCCcceEEEEe--cCCCcEEEEecCCCCCcceecCCCCCCCccCc
Q 048801 306 DFVIRVWRLP--DGLPIS-VLRGHTGAVTAIAFSPRPSAIYQLLSS--SDDGTCRIWDARYSQYSPRIYLPKPPDAITGK 380 (1715)
Q Consensus 306 DGtIrVWDl~--tg~~l~-~L~gH~~~VtsLafSPdg~~~~~LaSg--S~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~ 380 (1715)
++.|.+|+++ +++... ....+...+..++|+|++. +++++ +.++.|.+|++.++........
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~---l~~~~~~~~~~~v~~~~~~~g~~~~~~~~---------- 81 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC---LYSVDKEDDEGGIAAWQIDGQTAHKLNTV---------- 81 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE---EEEEEEETTEEEEEEEEEETTEEEEEEEE----------
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe---EEEEEecCCCceEEEEEecCCcEEEeeee----------
Confidence 4567777664 455433 2334567788999999986 33333 2378999999976653211100
Q ss_pred cCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec-CCCeEEEEeCCCCCccCCCCCceeeeeecC---------CCCC
Q 048801 381 SNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS-SDTFARVWSACKSSVEDSEQPIHELDVLSG---------HEND 450 (1715)
Q Consensus 381 ~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs-~DG~IrVWDl~t~~~~~~~~~~~~l~~l~g---------H~~~ 450 (1715)
..+...+..++|+|+|++|++++ .++.|.+|++.... ....+..+.. +...
T Consensus 82 -------------~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g------~~~~~~~~~~~~~~p~~~~~~~~ 142 (347)
T 3hfq_A 82 -------------VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADG------ALTLTDTVQHSGHGPRPEQDGSH 142 (347)
T ss_dssp -------------EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTS------CEEEEEEEECCCCCSSTTCSSCC
T ss_pred -------------ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCC------CeeecceeecCCCCCCccccCCC
Confidence 01234578899999999888777 68999999995321 0122222211 2235
Q ss_pred eeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecC-CCccCcccccccccccccCCCCCCC
Q 048801 451 VNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPR-SRRSHGKVGRWTRAYHLKVPPPPLP 529 (1715)
Q Consensus 451 V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~-t~~~~~~~~~~~~~~~l~~~~~~~~ 529 (1715)
+.+++|+|++ +.+++...++.|.+|++. ++... .. ..
T Consensus 143 ~~~~~~spdg--------------------------~l~v~~~~~~~v~~~~~~~~g~~~-~~------~~--------- 180 (347)
T 3hfq_A 143 IHYTDLTPDN--------------------------RLAVIDLGSDKVYVYNVSDAGQLS-EQ------SV--------- 180 (347)
T ss_dssp EEEEEECTTS--------------------------CEEEEETTTTEEEEEEECTTSCEE-EE------EE---------
T ss_pred ceEEEECCCC--------------------------cEEEEeCCCCEEEEEEECCCCcEE-Ee------ee---------
Confidence 8889999987 477777789999999997 32210 00 00
Q ss_pred CCCCCCCCcccccCCCCCeeEEEeCCCCCEEEE-EecCCeEEEEECCC--Cce--EEEEecCC------CCeEEEEEccC
Q 048801 530 PQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLA-AIMDCRICVWNAVD--GSL--VHSLTGHS------ASSYVLDVHPF 598 (1715)
Q Consensus 530 ~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaT-gs~DGtI~IWDl~s--g~~--l~tL~gH~------~~V~sLafSP~ 598 (1715)
........+..++|+|||++|++ +..++.|.+|++.. ++. +..+.... ..+..++|+|+
T Consensus 181 ----------~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spd 250 (347)
T 3hfq_A 181 ----------LTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHD 250 (347)
T ss_dssp ----------EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTT
T ss_pred ----------EEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCC
Confidence 00111235678999999997666 45688999999874 543 23333332 34889999995
Q ss_pred CCcEEEEEeCCCcEEEEECCC---CceEEEEEcccceEEEEEEcCCCCEEEEEeCC-CeEEEEE--CCCCccc
Q 048801 599 NPRIAMSAGYDGRTIVWDIWE---GTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDV-GQIYLLN--TGQGESQ 665 (1715)
Q Consensus 599 dg~lLaSgs~DGtI~VWDl~t---gk~l~tl~~h~~~V~svafSPDG~~LAsgs~D-G~I~IWd--l~tGe~~ 665 (1715)
+..+++++..++.|.+|++.. .+.+..+..+...+..++|+|||++|++++.+ +.|.+|+ ..+|+..
T Consensus 251 G~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 251 GHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp SCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 545557777899999999973 25556666555567899999999999888764 8999995 4556543
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.75 E-value=9e-16 Score=183.98 Aligned_cols=318 Identities=11% Similarity=0.083 Sum_probs=195.2
Q ss_pred CCEEEEEe----CCCcEEEEeC--CCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCC----CeeEEEECCC--CC--ce
Q 048801 255 GRFVITGS----DDRLVKIWSM--ETAFCLASCRGHEGDITDLAVSSNNTLVASASND----FVIRVWRLPD--GL--PI 320 (1715)
Q Consensus 255 G~~LaTGS----~DGtIrIWDl--~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~D----GtIrVWDl~t--g~--~l 320 (1715)
..+++.|+ .++.|.+|.+ .+++.......+...+..++|+|||++|++++.+ +.|.+|++.. +. .+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 34555664 4678999976 4565433322277788899999999999999886 7999998865 43 23
Q ss_pred EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcce
Q 048801 321 SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI 400 (1715)
Q Consensus 321 ~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~V 400 (1715)
..+..+......+++ ++.. ++++...++.|.+|++.....+..+.... ...+ .. ......+...+
T Consensus 93 ~~~~~~~~~p~~~~~--dg~~--l~~~~~~~~~v~~~~~~~~g~~~~~~~~~---~~~g-------~~-~~~~~~~~~~~ 157 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--NGKN--IVTANYSGGSITVFPIGQDGALLPASDVI---EFKG-------SG-PDKERQTMPHL 157 (361)
T ss_dssp EEEECSSSCEEEEEE--CSSE--EEEEETTTTEEEEEEBCTTSCBCSCSEEE---ECCC-------CC-SCTTTCSSCCE
T ss_pred eEeccCCCCcEEEEE--CCCE--EEEEECCCCEEEEEEeCCCCcCcccceeE---EccC-------CC-CCccccCCCcc
Confidence 334445667788888 5551 34444578999999997544322110000 0000 00 00011223447
Q ss_pred eEEEEccCCCeEEEe-cCCCeEEEEeCCCCCccCCCCCcee----eeeecCCCCCeeEEEEccCcccccccccccccccc
Q 048801 401 LCCAYNANGTVFVTG-SSDTFARVWSACKSSVEDSEQPIHE----LDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 401 tslafSpdG~~LatG-s~DG~IrVWDl~t~~~~~~~~~~~~----l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
.+++|+|+|++|+++ ..++.|.+|++.............. ......+...+..++|+|++
T Consensus 158 ~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg--------------- 222 (361)
T 3scy_A 158 HCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG--------------- 222 (361)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS---------------
T ss_pred eEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCC---------------
Confidence 899999999966554 4588999999875321000000000 11222344567899999987
Q ss_pred cccccCCcccCceEEE-EcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC
Q 048801 476 VPKFKNSWFCHDNIVT-CSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS 554 (1715)
Q Consensus 476 ~~~~~~s~~~~~~LaS-gS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS 554 (1715)
+++++ +..++.|.+|++.++.... ... ......+...+..++|+
T Consensus 223 -----------~~l~v~~~~~~~v~v~~~~~g~~~~-------~~~-----------------~~~~~~~~~~~~~i~~s 267 (361)
T 3scy_A 223 -----------KFAYLINEIGGTVIAFRYADGMLDE-------IQT-----------------VAADTVNAQGSGDIHLS 267 (361)
T ss_dssp -----------SEEEEEETTTCEEEEEEEETTEEEE-------EEE-----------------EESCSSCCCCEEEEEEC
T ss_pred -----------CEEEEEcCCCCeEEEEEecCCceEE-------eEE-----------------EecCCCCCCCcccEEEC
Confidence 45544 4479999999987543110 000 00111223346799999
Q ss_pred CCCCEEEEEecC--CeEEEEECC--CCc--eEEEEecCCCCeEEEEEccCCCcEEEEEe-CCCcEEEEE--CCCCceEEE
Q 048801 555 LDNRFVLAAIMD--CRICVWNAV--DGS--LVHSLTGHSASSYVLDVHPFNPRIAMSAG-YDGRTIVWD--IWEGTPIRI 625 (1715)
Q Consensus 555 PDG~~LaTgs~D--GtI~IWDl~--sg~--~l~tL~gH~~~V~sLafSP~dg~lLaSgs-~DGtI~VWD--l~tgk~l~t 625 (1715)
|||++|+++..+ +.|.||++. +++ .+..+.. ...+.+++|+| ++++|++++ .++.|.+|. ..+|+....
T Consensus 268 pdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 268 PDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITP-NGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp TTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECT-TSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred CCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECC-CCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 999999776654 899999985 455 4444554 55678999999 555555555 789999964 456766544
Q ss_pred EE-cccceEEEEEEc
Q 048801 626 YE-IGRFKLVDGKFS 639 (1715)
Q Consensus 626 l~-~h~~~V~svafS 639 (1715)
.. .+...+.|++|.
T Consensus 346 ~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 346 KKDIKVDKPVCLKFV 360 (361)
T ss_dssp SCCEECSSEEEEEEE
T ss_pred ceeeeCCCCeEEEEc
Confidence 31 123457888885
No 161
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.75 E-value=4.2e-17 Score=196.62 Aligned_cols=297 Identities=10% Similarity=0.041 Sum_probs=202.2
Q ss_pred ccceeEEEEcCCCCCeEE-----EEEcCCCCEEEEEeC-CC--cEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEE
Q 048801 231 QKMQNIKKLRGHRDAVYC-----AIFDRSGRFVITGSD-DR--LVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVAS 302 (1715)
Q Consensus 231 ~~~k~l~~L~GH~~~Vt~-----VafSpDG~~LaTGS~-DG--tIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLAS 302 (1715)
.+...+..|..|...+.. .+|+|||++|+.++. +| .|.+||+.+++......++...+.+++|+|||+.|+.
T Consensus 18 ~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~ 97 (388)
T 3pe7_A 18 STGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFY 97 (388)
T ss_dssp TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEE
T ss_pred CCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEE
Confidence 345567778888877776 899999999999987 66 4888899999888777777766667899999999999
Q ss_pred EeCCCeeEEEECCCCCceEEEeCCCCCeEEEE--ecCCCCcceEEEE----------------------ecCCCcEEEEe
Q 048801 303 ASNDFVIRVWRLPDGLPISVLRGHTGAVTAIA--FSPRPSAIYQLLS----------------------SSDDGTCRIWD 358 (1715)
Q Consensus 303 GS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLa--fSPdg~~~~~LaS----------------------gS~DGtVrIWD 358 (1715)
++.++.|++||+.+++....+..+...+.... +++++. +++. ...+..|.+||
T Consensus 98 ~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 174 (388)
T 3pe7_A 98 VKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCT---KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVD 174 (388)
T ss_dssp EETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSS---EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEE
T ss_pred EeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCC---eeccccccCcccccccccchhhhhhccCCcceEEEEE
Confidence 99999999999999988777776666565444 478876 4442 23457899999
Q ss_pred cCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCC------CeEEEEeCCCCCc
Q 048801 359 ARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSD------TFARVWSACKSSV 431 (1715)
Q Consensus 359 l~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~D------G~IrVWDl~t~~~ 431 (1715)
+.+++..... .+...+..++|+| +|+.|+.+..+ ..|.++++.++.
T Consensus 175 ~~~g~~~~l~--------------------------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~- 227 (388)
T 3pe7_A 175 LKTGESTVIL--------------------------QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN- 227 (388)
T ss_dssp TTTCCEEEEE--------------------------EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-
T ss_pred CCCCceEEee--------------------------cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-
Confidence 9887533221 1133478999999 99988876653 367788876532
Q ss_pred cCCCCCceeeeeecCCC--CCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEc-CC----CeEEEEecC
Q 048801 432 EDSEQPIHELDVLSGHE--NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-RD----GSAIIWIPR 504 (1715)
Q Consensus 432 ~~~~~~~~~l~~l~gH~--~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-~D----GsIrIWDl~ 504 (1715)
...+..+. ..+..++|+|++ +.|+..+ .+ +.|.+||+.
T Consensus 228 ---------~~~l~~~~~~~~~~~~~~spdg--------------------------~~l~~~~~~~~~~~~~l~~~d~~ 272 (388)
T 3pe7_A 228 ---------MRKVKTHAEGESCTHEFWVPDG--------------------------SALVYVSYLKGSPDRFIYSADPE 272 (388)
T ss_dssp ---------CEESCCCCTTEEEEEEEECTTS--------------------------SCEEEEEEETTCCCEEEEEECTT
T ss_pred ---------eEEeeeCCCCcccccceECCCC--------------------------CEEEEEecCCCCCcceEEEEecC
Confidence 22333333 257788999987 4454332 22 249999998
Q ss_pred CCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEE---------ecCCeEEEEECC
Q 048801 505 SRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAA---------IMDCRICVWNAV 575 (1715)
Q Consensus 505 t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTg---------s~DGtI~IWDl~ 575 (1715)
+++..... ... + ..... .....++|+|||+.|+.. ..+..|++||+.
T Consensus 273 ~g~~~~l~-~~~------------------~--~~~~~---~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 328 (388)
T 3pe7_A 273 TLENRQLT-SMP------------------A--CSHLM---SNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK 328 (388)
T ss_dssp TCCEEEEE-EEC------------------C--EEEEE---ECTTSSEEEEEECCC------------CCCCEEEEEETT
T ss_pred CCceEEEE-cCC------------------C--ceeee---ecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEecc
Confidence 75421100 000 0 00000 001123799999988864 446689999998
Q ss_pred CCceEEEEecCCC-----------CeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 576 DGSLVHSLTGHSA-----------SSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 576 sg~~l~tL~gH~~-----------~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
+++. ..+..|.. .+.+++|+|++..+++++..+|...||.+
T Consensus 329 ~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 329 NGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp TTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 8765 45655655 57889999965566666667787777754
No 162
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.74 E-value=5.8e-17 Score=195.17 Aligned_cols=310 Identities=9% Similarity=0.028 Sum_probs=205.3
Q ss_pred cceeEEEEcCCCCC-----eEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEE
Q 048801 232 KMQNIKKLRGHRDA-----VYCAIFDRSGRFVITGSDD---RLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASA 303 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~-----Vt~VafSpDG~~LaTGS~D---GtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASG 303 (1715)
+...+..|..+... +.+++|+|||++|+.+... ..|.+|++.+++......++...+..+.|+|||++|+.+
T Consensus 19 ~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 19 TQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEE
T ss_pred CCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEE
Confidence 44455666655444 7788999999998877543 468889999887655444333333347899999999999
Q ss_pred eCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCC
Q 048801 304 SNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNV 383 (1715)
Q Consensus 304 S~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~ 383 (1715)
+.++.|++|++.+++....+..+.. |++++. .|+..+.++...+|..
T Consensus 99 ~~~~~l~~~d~~~~~~~~~~~~~~~------~~~~g~---~l~~~~~~~~~~~~~~------------------------ 145 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQVIYTVDEE------WKGYGT---WVANSDCTKLVGIEIL------------------------ 145 (396)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCTT------EEEEEE---EEECTTSSEEEEEEEE------------------------
T ss_pred EcCCcEEEEECCCCCcEEEEecccc------cCCCCC---EEEeccCCcccccccc------------------------
Confidence 9999999999998877666554443 666665 5666666665555531
Q ss_pred CCCCCCCCCCCCCCcceeEEEEccCCCeEEEe-----cCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEcc
Q 048801 384 PSNNGPSSSNGLQSHQILCCAYNANGTVFVTG-----SSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSG 458 (1715)
Q Consensus 384 ~~~~~~~~~~~~h~~~VtslafSpdG~~LatG-----s~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafsp 458 (1715)
.++|+|+++.++.+ ..+..|.+||+.+++. ..+..+...+..+.|+|
T Consensus 146 ------------------~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~----------~~~~~~~~~~~~~~~sp 197 (396)
T 3c5m_A 146 ------------------KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL----------EVIHQDTAWLGHPIYRP 197 (396)
T ss_dssp ------------------GGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE----------EEEEEESSCEEEEEEET
T ss_pred ------------------ccccCCCCcceeeeeeccCCCcceEEEEECCCCcE----------EeeccCCcccccceECC
Confidence 12366788777654 3567899999976532 22234566788999999
Q ss_pred -CcccccccccccccccccccccCCcccCceEEEEcCC------CeEEEEecCCCccCcccccccccccccCCCCCCCCC
Q 048801 459 -CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD------GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQ 531 (1715)
Q Consensus 459 -dg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D------GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~ 531 (1715)
++ ..|+.++.+ ..|.+|++.++.
T Consensus 198 ~dg--------------------------~~l~~~~~~~~~~~~~~l~~~d~~~~~------------------------ 227 (396)
T 3c5m_A 198 FDD--------------------------STVGFCHEGPHDLVDARMWLVNEDGSN------------------------ 227 (396)
T ss_dssp TEE--------------------------EEEEEEECSCSSSCSCCCEEEETTSCC------------------------
T ss_pred CCC--------------------------CEEEEEecCCCCCCCceEEEEECCCCc------------------------
Confidence 55 445554433 357777765422
Q ss_pred CCCCCCcccccCC--CCCeeEEEeCCCCCEEEEEecC-----CeEEEEECCCCceEEEEecCCCCeEEEEEcc-CCCcEE
Q 048801 532 PPRGGPRQRLLPT--PRGVNMIVWSLDNRFVLAAIMD-----CRICVWNAVDGSLVHSLTGHSASSYVLDVHP-FNPRIA 603 (1715)
Q Consensus 532 ~~~g~~~~~l~~h--~~~VtslafSPDG~~LaTgs~D-----GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP-~dg~lL 603 (1715)
...+..+ ...+..++|+|||++|+.++.+ +.|++||+.+++....... .. .. +.|+| ++. ++
T Consensus 228 ------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~-~~~s~~dg~-~l 297 (396)
T 3c5m_A 228 ------VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-PP-CS-HLMSNFDGS-LM 297 (396)
T ss_dssp ------CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-CS-EE-EEEECSSSS-EE
T ss_pred ------eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-CC-CC-CCccCCCCc-eE
Confidence 0111111 2247789999999988877654 4599999988876443322 22 33 88998 655 55
Q ss_pred EEEe----------------CCCcEEEEECCCCceEEEEEcccc-----------eEEEEEEcCCCCEEEEEeC-CC--e
Q 048801 604 MSAG----------------YDGRTIVWDIWEGTPIRIYEIGRF-----------KLVDGKFSPDGTSIVLSDD-VG--Q 653 (1715)
Q Consensus 604 aSgs----------------~DGtI~VWDl~tgk~l~tl~~h~~-----------~V~svafSPDG~~LAsgs~-DG--~ 653 (1715)
++++ .++.|++||+.+++... +..+.. .+..++|+|||+.|++++. +| .
T Consensus 298 ~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~ 376 (396)
T 3c5m_A 298 VGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK-LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPA 376 (396)
T ss_dssp EEEECCC----------CCCCCCEEEEEETTTTBCCE-EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCE
T ss_pred EEecCCcceeeccccccccCCCCcEEEEecccCceEE-ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCce
Confidence 5543 34789999998887543 433433 1456799999999887754 44 4
Q ss_pred EEEEECCCCc
Q 048801 654 IYLLNTGQGE 663 (1715)
Q Consensus 654 I~IWdl~tGe 663 (1715)
|+++++.+++
T Consensus 377 l~~~~~~~~~ 386 (396)
T 3c5m_A 377 IYIADVPESY 386 (396)
T ss_dssp EEEEECCTTC
T ss_pred EEEEEEcccc
Confidence 5555665553
No 163
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.72 E-value=1.1e-15 Score=185.35 Aligned_cols=307 Identities=12% Similarity=0.094 Sum_probs=204.3
Q ss_pred CCCEEEEEe------CCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC----------CCeeEEEECCCC
Q 048801 254 SGRFVITGS------DDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN----------DFVIRVWRLPDG 317 (1715)
Q Consensus 254 DG~~LaTGS------~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~----------DGtIrVWDl~tg 317 (1715)
+++++++.. .|+.|.+||..+++.+.++..+..+ .++|+|||++|++++. +++|.+||+.++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 455555543 3789999999999999988877665 8999999999998863 678999999999
Q ss_pred CceEEEeCC------CCCeEEEEecCCCCcceEEEEec--CCCcEEEEecCCCCCcce-ecCCCCCCCccCccCCCCCCC
Q 048801 318 LPISVLRGH------TGAVTAIAFSPRPSAIYQLLSSS--DDGTCRIWDARYSQYSPR-IYLPKPPDAITGKSNVPSNNG 388 (1715)
Q Consensus 318 ~~l~~L~gH------~~~VtsLafSPdg~~~~~LaSgS--~DGtVrIWDl~tg~~l~~-i~~~~~~~~i~g~~~~~~~~~ 388 (1715)
+.+..+... ......++|+|+++ +|+++. .++.|.+||+.+++.+.. +..+
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~---~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~----------------- 151 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGK---FIVLQNASPATSIGIVDVAKGDYVEDVTAAA----------------- 151 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSS---EEEEEEESSSEEEEEEETTTTEEEEEEGGGT-----------------
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCC---EEEEECCCCCCeEEEEECCCCcEEEEEecCC-----------------
Confidence 988887632 34567899999998 666654 368999999998876544 3221
Q ss_pred CCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCC-CCccCCCCCceeeeeecCCCCCeeEEEEccCccccccc
Q 048801 389 PSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACK-SSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSA 466 (1715)
Q Consensus 389 ~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t-~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~ 466 (1715)
....+.+.|++ ..+++.+.||.+.+|++.. ++... .......+..+..++ .+.++++
T Consensus 152 ----------~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~---~~~~~~~~~~~~~~~-~~~~~~~------- 210 (361)
T 2oiz_A 152 ----------GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVAS---QSRSKQMFSVKDDPI-FIAPALD------- 210 (361)
T ss_dssp ----------TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEE---EEECCCCSCTTTSCB-CSCCEEC-------
T ss_pred ----------CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEee---eccccceEcCCCCce-EEEeccc-------
Confidence 11235567765 5677788889998888754 21100 000000111111111 1111121
Q ss_pred ccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCC
Q 048801 467 MSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPR 546 (1715)
Q Consensus 467 ~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~ 546 (1715)
...++..+.++.|.++|+....... ...|. +. ............
T Consensus 211 -------------------g~~~~~~~~~~~v~v~d~~~~~~~~-~~~~~----~~------------~~~~~~~~~~p~ 254 (361)
T 2oiz_A 211 -------------------KDKAHFVSYYGNVYSADFSGDEVKV-DGPWS----LL------------NDEDKAKNWVPG 254 (361)
T ss_dssp -------------------SSEEEEEBTTSEEEEEECSSSSCEE-EEEEE----SC------------CHHHHHTTCEEC
T ss_pred -------------------CCEEEEEeCCCeEEEEEecCCCcee-ccccc----cc------------CccccccccccC
Confidence 2456666788999999987533110 00000 00 000000000012
Q ss_pred CeeEEEeCCCCCEEEEEec-----------CCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEE
Q 048801 547 GVNMIVWSLDNRFVLAAIM-----------DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVW 615 (1715)
Q Consensus 547 ~VtslafSPDG~~LaTgs~-----------DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VW 615 (1715)
+...++|+|+++.++++.. .+.|.+||+.+++.+.++..+. +.+|+|+| ++++|++++. +.|.||
T Consensus 255 g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~-~~v~v~ 330 (361)
T 2oiz_A 255 GYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTLDG-GNVNVY 330 (361)
T ss_dssp CSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEEEECS-SCEEEE
T ss_pred CeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEEEeCC-CeEEEE
Confidence 2234789999888877654 3589999999999999998887 89999999 5567777776 999999
Q ss_pred ECCCC--ceEEEEEcccceEEEEEEcCCCC
Q 048801 616 DIWEG--TPIRIYEIGRFKLVDGKFSPDGT 643 (1715)
Q Consensus 616 Dl~tg--k~l~tl~~h~~~V~svafSPDG~ 643 (1715)
|..++ +.+..+.........++|+|||+
T Consensus 331 D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 331 DISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp ECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred ECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999 99998854555677899999986
No 164
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.71 E-value=2.1e-15 Score=180.87 Aligned_cols=297 Identities=10% Similarity=0.105 Sum_probs=184.7
Q ss_pred CCCCEEEEEeC----CCeeEEEEC--CCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCC----CcEEEEecCC--C
Q 048801 295 SNNTLVASASN----DFVIRVWRL--PDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD----GTCRIWDARY--S 362 (1715)
Q Consensus 295 pDg~lLASGS~----DGtIrVWDl--~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D----GtVrIWDl~t--g 362 (1715)
+...+++.|+. ++.|.+|.+ .+++.......+...+..++|+|+++ +|++++.+ +.|.+|++.. +
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~---~l~~~~~~~~~~~~v~~~~~~~~~g 87 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGK---FVYSVNEFSKDQAAVSAFAFDKEKG 87 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSS---EEEEEECCSSTTCEEEEEEEETTTT
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCC---EEEEEEccCCCCCcEEEEEEeCCCC
Confidence 34456666643 568999976 45654333222677888999999997 67777765 8999998865 3
Q ss_pred CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec-CCCeEEEEeCCCCCccCCCCCceee
Q 048801 363 QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS-SDTFARVWSACKSSVEDSEQPIHEL 441 (1715)
Q Consensus 363 ~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs-~DG~IrVWDl~t~~~~~~~~~~~~l 441 (1715)
........ ..+......+++ +|++|++++ .++.|.+|++........ ....
T Consensus 88 ~~~~~~~~-----------------------~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~---~~~~ 139 (361)
T 3scy_A 88 TLHLLNTQ-----------------------KTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLP---ASDV 139 (361)
T ss_dssp EEEEEEEE-----------------------ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCS---CSEE
T ss_pred cEEEeeEe-----------------------ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcc---ccee
Confidence 22111100 011234566777 777666665 688999999975321100 0000
Q ss_pred eee--------cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccc
Q 048801 442 DVL--------SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVG 513 (1715)
Q Consensus 442 ~~l--------~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~ 513 (1715)
... ..+...+.+++|+|++ ...++++..++.|.+|++..........
T Consensus 140 ~~~~g~~~~~~~~~~~~~~~~~~spdg-------------------------~~l~~~~~~~~~v~v~~~~~~~~~~~~~ 194 (361)
T 3scy_A 140 IEFKGSGPDKERQTMPHLHCVRITPDG-------------------------KYLLADDLGTDQIHKFNINPNANADNKE 194 (361)
T ss_dssp EECCCCCSCTTTCSSCCEEEEEECTTS-------------------------SEEEEEETTTTEEEEEEECTTCCTTTCC
T ss_pred EEccCCCCCccccCCCcceEEEECCCC-------------------------CEEEEEeCCCCEEEEEEEcCCCCccccc
Confidence 011 1123346889999987 1245566668999999887532100000
Q ss_pred cccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCce--EEEEe---cCC
Q 048801 514 RWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGSL--VHSLT---GHS 587 (1715)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~~--l~tL~---gH~ 587 (1715)
..... +............+..++|+|||++|++++ .++.|.+|++.++++ +..+. .+.
T Consensus 195 ~l~~~----------------~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~ 258 (361)
T 3scy_A 195 KFLTK----------------GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNA 258 (361)
T ss_dssp CCEEE----------------EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCC
T ss_pred ceeec----------------ccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCC
Confidence 00000 000011122344578899999999888777 689999999987754 33332 334
Q ss_pred CCeEEEEEccCCCcEE-EEEeC-CCcEEEEECC--CCc--eEEEEEcccceEEEEEEcCCCCEEEEEe-CCCeEEEEEC-
Q 048801 588 ASSYVLDVHPFNPRIA-MSAGY-DGRTIVWDIW--EGT--PIRIYEIGRFKLVDGKFSPDGTSIVLSD-DVGQIYLLNT- 659 (1715)
Q Consensus 588 ~~V~sLafSP~dg~lL-aSgs~-DGtI~VWDl~--tgk--~l~tl~~h~~~V~svafSPDG~~LAsgs-~DG~I~IWdl- 659 (1715)
.....++|+| ++++| ++... ++.|.||++. +++ .+..+.. ...+.+++|+|||++|++++ .++.|.+|.+
T Consensus 259 ~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 259 QGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp CCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 5578999999 55555 44445 5899999995 455 4455554 44677899999999999887 6789999654
Q ss_pred -CCCccc
Q 048801 660 -GQGESQ 665 (1715)
Q Consensus 660 -~tGe~~ 665 (1715)
.+|+..
T Consensus 337 ~~~g~~~ 343 (361)
T 3scy_A 337 QATGLLT 343 (361)
T ss_dssp TTTCCEE
T ss_pred CCCCcEe
Confidence 466543
No 165
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.67 E-value=1.7e-15 Score=196.90 Aligned_cols=305 Identities=10% Similarity=-0.025 Sum_probs=201.9
Q ss_pred EEcCCCCCeEEEEEcCCCCEEEEE--eCCCcEEEEeCCCCcEEEEecCCCCCeE---------EEEEC--CCCCE-EEEE
Q 048801 238 KLRGHRDAVYCAIFDRSGRFVITG--SDDRLVKIWSMETAFCLASCRGHEGDIT---------DLAVS--SNNTL-VASA 303 (1715)
Q Consensus 238 ~L~GH~~~Vt~VafSpDG~~LaTG--S~DGtIrIWDl~tgk~l~tL~gHs~~Vt---------sLafS--pDg~l-LASG 303 (1715)
.+.+|...|..++|++++-++++. +.++...||....+.....+..|...+. ...|+ |||++ |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 366899999999999887777777 5588999999655556677877777766 66665 99998 7766
Q ss_pred eC-CCeeEEEECC-CC-CceEEEeC-----CCCCeEEEEecCCCCcceEEEEecCC----------CcEEEEecCC----
Q 048801 304 SN-DFVIRVWRLP-DG-LPISVLRG-----HTGAVTAIAFSPRPSAIYQLLSSSDD----------GTCRIWDARY---- 361 (1715)
Q Consensus 304 S~-DGtIrVWDl~-tg-~~l~~L~g-----H~~~VtsLafSPdg~~~~~LaSgS~D----------GtVrIWDl~t---- 361 (1715)
+. +..|.+|++. ++ .....+.. |...+.+++|+|+++ .|++++.+ ..|++||+.+
T Consensus 98 ~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~---~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 174 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERG---EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA 174 (662)
T ss_dssp BTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTT---EEEEEEEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred ECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCC---EEEEEEecccCCCCCCceeEEEEEECCCCccc
Confidence 54 4566666665 12 44566665 677889999999998 67777766 5899999876
Q ss_pred --CCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC--------CeEEEEeCC-CCC
Q 048801 362 --SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD--------TFARVWSAC-KSS 430 (1715)
Q Consensus 362 --g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D--------G~IrVWDl~-t~~ 430 (1715)
+.. ..+.. .+...+..++|+|||++|+.++.+ ..|++||+. ++.
T Consensus 175 ~~~~~-~~l~~------------------------~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~ 229 (662)
T 3azo_A 175 DRSAV-RELSD------------------------DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR 229 (662)
T ss_dssp CGGGS-EESSC------------------------SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC
T ss_pred cCCce-eEEEe------------------------cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc
Confidence 332 11100 113457788999999999877754 479999997 331
Q ss_pred ccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC--eEEEEecCCCcc
Q 048801 431 VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG--SAIIWIPRSRRS 508 (1715)
Q Consensus 431 ~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG--sIrIWDl~t~~~ 508 (1715)
. ........+|...+..+.|+|++ ++++++..+| .|.+||+.+++.
T Consensus 230 ~------~~~~~l~~~~~~~~~~~~~spdg--------------------------~l~~~~~~~~~~~l~~~~~~~~~~ 277 (662)
T 3azo_A 230 F------ADTRTLLGGPEEAIAQAEWAPDG--------------------------SLIVATDRTGWWNLHRVDPATGAA 277 (662)
T ss_dssp E------EEEEEEEEETTBCEEEEEECTTS--------------------------CEEEEECTTSSCEEEEECTTTCCE
T ss_pred c------cccEEeCCCCCceEcceEECCCC--------------------------eEEEEECCCCCeEEEEEECCCCce
Confidence 1 12223334557789999999987 5778888888 555666544321
Q ss_pred CcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEE--ECCCCceEEEEecC
Q 048801 509 HGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVW--NAVDGSLVHSLTGH 586 (1715)
Q Consensus 509 ~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IW--Dl~sg~~l~tL~gH 586 (1715)
...... ........-...+..++|++++++++++.. +.++|| |+.+++ +..+..|
T Consensus 278 ~~l~~~---------------------~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~ 334 (662)
T 3azo_A 278 TQLCRR---------------------EEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGP 334 (662)
T ss_dssp EESSCC---------------------SSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSS
T ss_pred eecccc---------------------cccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCC
Confidence 110000 000000000112456899999999999998 999999 655554 6788888
Q ss_pred CCCeEEE-EEccCCCcEEE-EEeCCC--cEEEEECCCCceEEEEE
Q 048801 587 SASSYVL-DVHPFNPRIAM-SAGYDG--RTIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 587 ~~~V~sL-afSP~dg~lLa-Sgs~DG--tI~VWDl~tgk~l~tl~ 627 (1715)
...+..+ +++ +..+++ +++.+. .|.+||+.+++......
T Consensus 335 ~~~~~~~~s~~--~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~ 377 (662)
T 3azo_A 335 WTEWAATLTVS--GTRAVGVAASPRTAYEVVELDTVTGRARTIGA 377 (662)
T ss_dssp CCEEEEEEEEE--TTEEEEEEEETTEEEEEEEEETTTCCEEEEES
T ss_pred CCeEEEEEecC--CCEEEEEEcCCCCCCEEEEEECCCCceEEeec
Confidence 8778777 443 444444 445454 46666777777554433
No 166
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.67 E-value=2.8e-15 Score=186.33 Aligned_cols=167 Identities=14% Similarity=0.100 Sum_probs=133.7
Q ss_pred CCCCCeEEEEEcCCCCEEE----EEeCCCcEEEEeCCCC--------c---EEEEecCCCCCeEEEEECCC-CCEEEEEe
Q 048801 241 GHRDAVYCAIFDRSGRFVI----TGSDDRLVKIWSMETA--------F---CLASCRGHEGDITDLAVSSN-NTLVASAS 304 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~La----TGS~DGtIrIWDl~tg--------k---~l~tL~gHs~~VtsLafSpD-g~lLASGS 304 (1715)
.|.+.|++++|+|+|++|| +|+.|+.|+|||+.++ + .+..+.+|...|++++|+|+ +.+||+|+
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 4678899999999999999 7889999999998765 2 25667789999999999998 89999999
Q ss_pred CCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCC
Q 048801 305 NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384 (1715)
Q Consensus 305 ~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~ 384 (1715)
.||+|+|||+.++..+....+|...|++++|+|++. +|++|+.||+|++||++ +.....+..+.
T Consensus 170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~---~lasgs~dg~v~iwd~~-~~~~~~~~~~~------------ 233 (434)
T 2oit_A 170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGK---QLAVGKQNGTVVQYLPT-LQEKKVIPCPP------------ 233 (434)
T ss_dssp TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSS---CEEEEETTSCEEEECTT-CCEEEEECCCT------------
T ss_pred CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCC---EEEEEcCCCcEEEEccC-CcccccccCCc------------
Confidence 999999999999877777778999999999999987 89999999999999997 44333221110
Q ss_pred CCCCCCCCCCCCCcceeEEEEccCCCeEEEec-CCC------eEEEEeCCCC
Q 048801 385 SNNGPSSSNGLQSHQILCCAYNANGTVFVTGS-SDT------FARVWSACKS 429 (1715)
Q Consensus 385 ~~~~~~~~~~~h~~~VtslafSpdG~~LatGs-~DG------~IrVWDl~t~ 429 (1715)
.....|...|.+++|++++.++++.+ .+| .+++|++.+.
T Consensus 234 ------~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 234 ------FYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp ------TCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ------ccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 00112345799999999988775433 333 3899999753
No 167
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.66 E-value=1.8e-15 Score=200.28 Aligned_cols=313 Identities=10% Similarity=0.015 Sum_probs=197.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCC-----eEEEEecCCCCcceEEEEecCC---------
Q 048801 286 GDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGA-----VTAIAFSPRPSAIYQLLSSSDD--------- 351 (1715)
Q Consensus 286 ~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~-----VtsLafSPdg~~~~~LaSgS~D--------- 351 (1715)
....+++|+|||.+|+++ |++|++||+.++++...+.+|... ...++||||++ +|+.++.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~---~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ---FILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSS---EEEEEEEEEECSSSCEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCC---EEEEEECCeeeEEEccc
Confidence 346689999999999987 899999999999988888877643 23478899998 77777765
Q ss_pred CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCc
Q 048801 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSV 431 (1715)
Q Consensus 352 GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~ 431 (1715)
+.+.+||+.+++.... ..+...+..++|||||+.||.+. ++.|++|++.++..
T Consensus 92 ~~~~~~d~~~~~~~~l--------------------------~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~ 144 (740)
T 4a5s_A 92 ASYDIYDLNKRQLITE--------------------------ERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPS 144 (740)
T ss_dssp EEEEEEETTTTEECCS--------------------------SCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCC
T ss_pred eEEEEEECCCCcEEEc--------------------------ccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCce
Confidence 5677999998764321 11234589999999999999884 68999999987643
Q ss_pred cCCCCCceeeeeecCCC---------CCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC------
Q 048801 432 EDSEQPIHELDVLSGHE---------NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG------ 496 (1715)
Q Consensus 432 ~~~~~~~~~l~~l~gH~---------~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG------ 496 (1715)
............+.++. +....+.|+|+| +.|+.++.|.
T Consensus 145 ~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg--------------------------~~la~~~~d~~~v~~~ 198 (740)
T 4a5s_A 145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG--------------------------TFLAYAQFNDTEVPLI 198 (740)
T ss_dssp EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS--------------------------SEEEEEEEECTTCCEE
T ss_pred EEEcCCCCccceecCcccccccchhcCCCcceEECCCC--------------------------CEEEEEEEcccCCceE
Confidence 11111111111122222 122458899997 3344333222
Q ss_pred ------------------------------eEEEEecCC---CccCcccccccccccccCCCCCCCCCCCCCCCccccc-
Q 048801 497 ------------------------------SAIIWIPRS---RRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLL- 542 (1715)
Q Consensus 497 ------------------------------sIrIWDl~t---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~- 542 (1715)
.|.+||+.+ +... ....+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~---------------------------~~~~l~~ 251 (740)
T 4a5s_A 199 EYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA---------------------------TSIQITA 251 (740)
T ss_dssp EEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCC---------------------------CEEEECC
T ss_pred EEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcc---------------------------eEEEecC
Confidence 344455543 2100 111111
Q ss_pred -----CCCCCeeEEEeCCCCCEEEEEec----CCeEEEEECCCCc----eE--EEE--ecCCCCeE-----EEEEccCCC
Q 048801 543 -----PTPRGVNMIVWSLDNRFVLAAIM----DCRICVWNAVDGS----LV--HSL--TGHSASSY-----VLDVHPFNP 600 (1715)
Q Consensus 543 -----~h~~~VtslafSPDG~~LaTgs~----DGtI~IWDl~sg~----~l--~tL--~gH~~~V~-----sLafSP~dg 600 (1715)
++...+..++|||||++++.... +..|++||+.+|+ +. ..+ .+|...|. .++|+|++.
T Consensus 252 ~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~ 331 (740)
T 4a5s_A 252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGN 331 (740)
T ss_dssp CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCC
Confidence 35667899999999997776543 3379999999887 22 222 45665554 789999554
Q ss_pred cEEEEEe-CCC--cEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCC-----C--eEEEEECCCCcc---cc-
Q 048801 601 RIAMSAG-YDG--RTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDV-----G--QIYLLNTGQGES---QK- 666 (1715)
Q Consensus 601 ~lLaSgs-~DG--tI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~D-----G--~I~IWdl~tGe~---~k- 666 (1715)
.+++..+ .+| .|++||+.++++.... .+...|..+. ++|++.|+..+.. + .|+..++..+.. +.
T Consensus 332 ~l~~~~s~~~G~~~l~~~~~~~~~~~~lT-~g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~ 409 (740)
T 4a5s_A 332 SFYKIISNEEGYRHICYFQIDKKDCTFIT-KGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSC 409 (740)
T ss_dssp EEEEEEECTTSCEEEEEEETTCSSCEESC-CSSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESST
T ss_pred EEEEEEEcCCCceEEEEEECCCCceEecc-cCCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeecc
Confidence 4442554 444 6888898777665433 3455565543 2457766654433 3 566666655432 11
Q ss_pred ------ccccceeecCCCccEEEcC
Q 048801 667 ------DAKYDQFFLGDYRPLIRDS 685 (1715)
Q Consensus 667 ------~~~~~~~fs~D~r~L~~d~ 685 (1715)
.......|++|++.+++..
T Consensus 410 ~~~~~~~~~~~~~~S~dg~~~~~~~ 434 (740)
T 4a5s_A 410 ELNPERCQYYSVSFSKEAKYYQLRC 434 (740)
T ss_dssp TTSTTTBCBEEEEECTTSSEEEEEE
T ss_pred ccCCCCCceEEEEECCCCCEEEEEe
Confidence 1223457888988776553
No 168
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.65 E-value=1.9e-15 Score=187.80 Aligned_cols=217 Identities=8% Similarity=0.036 Sum_probs=158.4
Q ss_pred ceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCC--CCCcee----eeeecCCCCCeeEEEEccCccccccccccccc
Q 048801 399 QILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDS--EQPIHE----LDVLSGHENDVNYVQFSGCAVASRSAMSDAFK 472 (1715)
Q Consensus 399 ~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~--~~~~~~----l~~l~gH~~~V~sLafspdg~as~~~~~~~~~ 472 (1715)
.+..+++++++.++++|+.++ ++||+......... ...... ......+...|.+++|+|++
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg------------ 104 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN------------ 104 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTS------------
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCC------------
Confidence 478899999999999999888 88887642110000 000000 01112356689999999987
Q ss_pred ccccccccCCcccCceEE----EEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCe
Q 048801 473 EENVPKFKNSWFCHDNIV----TCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGV 548 (1715)
Q Consensus 473 ~~~~~~~~~s~~~~~~La----SgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~V 548 (1715)
.+|+ +++.|+.|+|||+.+.... .... .........+.+|...|
T Consensus 105 --------------~~lav~~~sgs~d~~v~iwd~~~~~~~----~~~~--------------~~~~~~~~~~~~h~~~V 152 (434)
T 2oit_A 105 --------------LTLSACMMSSEYGSIIAFFDVRTFSNE----AKQQ--------------KRPFAYHKLLKDAGGMV 152 (434)
T ss_dssp --------------CEEEEEEEETTTEEEEEEEEHHHHHCT----TCSS--------------CCCSEEEECCCSGGGSE
T ss_pred --------------CEEEEEEeccCCCceEEEEEccccccC----CcCC--------------cceeeeeeccCCCCCce
Confidence 6777 7889999999998753100 0000 00000123345678899
Q ss_pred eEEEeCCC-CCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE
Q 048801 549 NMIVWSLD-NRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 549 tslafSPD-G~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~ 627 (1715)
.+++|+|+ +.+|++++.||+|+|||+.++..+....+|...|++++|+| ++.+|++|+.||+|++||+. ++....+.
T Consensus 153 ~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~~~~~ 230 (434)
T 2oit_A 153 IDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEKKVIP 230 (434)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEEEEEC
T ss_pred EEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-Cccccccc
Confidence 99999998 88999999999999999999988777888999999999999 68889999999999999997 67666665
Q ss_pred ccc-------ceEEEEEEcCCCCEEEEE-eCCC------eEEEEECCCC
Q 048801 628 IGR-------FKLVDGKFSPDGTSIVLS-DDVG------QIYLLNTGQG 662 (1715)
Q Consensus 628 ~h~-------~~V~svafSPDG~~LAsg-s~DG------~I~IWdl~tG 662 (1715)
.+. ..|.+++|++++.++++. ..+| .+++|++...
T Consensus 231 ~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 231 CPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 432 379999999999888654 3443 3899999764
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.64 E-value=2.7e-14 Score=173.04 Aligned_cols=297 Identities=10% Similarity=0.050 Sum_probs=196.8
Q ss_pred CCCEEEEEe------CCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec----------CCCcEEEEec
Q 048801 296 NNTLVASAS------NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS----------DDGTCRIWDA 359 (1715)
Q Consensus 296 Dg~lLASGS------~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS----------~DGtVrIWDl 359 (1715)
+++++++.. .|+.|.+||..+++.+..+..+..+ .++|+|+++ +|+++. .+++|.+||+
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~---~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGK---KIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSS---EEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCC---EEEEEEecccccccCCCCCEEEEEEC
Confidence 566666654 3679999999999998888876555 999999998 555554 3678999999
Q ss_pred CCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC--CCeEEEEeCCCCCccCCCCC
Q 048801 360 RYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS--DTFARVWSACKSSVEDSEQP 437 (1715)
Q Consensus 360 ~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~--DG~IrVWDl~t~~~~~~~~~ 437 (1715)
.+++.+..+...... ..+......++|+|+|++|+++.. ++.|.+||+.+++
T Consensus 89 ~t~~~~~~i~~~~~~-------------------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~------- 142 (361)
T 2oiz_A 89 DKLTFEKEISLPPKR-------------------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD------- 142 (361)
T ss_dssp TTCCEEEEEEECTTB-------------------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE-------
T ss_pred cCCcEEEEEEcCccc-------------------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc-------
Confidence 888776665432110 001233567999999999988863 6899999998753
Q ss_pred ceeeee-ecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCC-CccCcccccc
Q 048801 438 IHELDV-LSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS-RRSHGKVGRW 515 (1715)
Q Consensus 438 ~~~l~~-l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t-~~~~~~~~~~ 515 (1715)
.+.. +.. . ....+.+.|.+ ...+++.+.||.+.+|++.. ++.....
T Consensus 143 --~~~~~i~~-~-~~~~v~~~p~~-------------------------~~~~~~~~~dg~~~~v~~~~~g~~~~~~--- 190 (361)
T 2oiz_A 143 --YVEDVTAA-A-GCWSVIPQPNR-------------------------PRSFMTICGDGGLLTINLGEDGKVASQS--- 190 (361)
T ss_dssp --EEEEEGGG-T-TEEEEEECTTS-------------------------SSEEEEEETTSSEEEEEECTTSSEEEEE---
T ss_pred --EEEEEecC-C-CcceeEEcCCC-------------------------CeeEEEECCCCcEEEEEECCCCcEeeec---
Confidence 2333 221 1 11224556654 35788889999999998764 2211000
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCce--EEEEec------CC
Q 048801 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL--VHSLTG------HS 587 (1715)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~--l~tL~g------H~ 587 (1715)
... ..+...... ..+.+++++..++..+.++.|.++|+..... +..+.- +.
T Consensus 191 -~~~-------------------~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~ 249 (361)
T 2oiz_A 191 -RSK-------------------QMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAK 249 (361)
T ss_dssp -ECC-------------------CCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHT
T ss_pred -ccc-------------------ceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccc
Confidence 000 000001111 1233467777777788899999999875542 222211 00
Q ss_pred ----CCeEEEEEccCCCcEEEEEeC----------CCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCe
Q 048801 588 ----ASSYVLDVHPFNPRIAMSAGY----------DGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQ 653 (1715)
Q Consensus 588 ----~~V~sLafSP~dg~lLaSgs~----------DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~ 653 (1715)
.....++|+|++++++++... .+.|.+||+.+++.+.++..+. +..++|+|||++|++++. +.
T Consensus 250 ~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~ 326 (361)
T 2oiz_A 250 NWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GN 326 (361)
T ss_dssp TCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SC
T ss_pred ccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-Ce
Confidence 111237899966666665541 3489999999999999999776 899999999999998887 99
Q ss_pred EEEEECCCC--cccccc------ccceeecCCCc
Q 048801 654 IYLLNTGQG--ESQKDA------KYDQFFLGDYR 679 (1715)
Q Consensus 654 I~IWdl~tG--e~~k~~------~~~~~fs~D~r 679 (1715)
|.|||+.++ +.+... +....|+|||+
T Consensus 327 v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 327 VNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 999999999 765432 23345566654
No 170
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.64 E-value=4.3e-14 Score=170.61 Aligned_cols=289 Identities=9% Similarity=0.067 Sum_probs=182.6
Q ss_pred EEEEEeCC--CcEEEEeC--CCCcEEE--Eec-CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC-CCCceEEEeCC-C
Q 048801 257 FVITGSDD--RLVKIWSM--ETAFCLA--SCR-GHEGDITDLAVSSNNTLVASASNDFVIRVWRLP-DGLPISVLRGH-T 327 (1715)
Q Consensus 257 ~LaTGS~D--GtIrIWDl--~tgk~l~--tL~-gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~-tg~~l~~L~gH-~ 327 (1715)
+|+.|+.. +.|.+|++ .++++.. ... ++...+..++|+|+|++|++++.+ .|.+|++. +++........ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 35556542 56877765 5665432 221 244568899999999999999888 99999997 77665433211 1
Q ss_pred CCeEEEEecCCCCcceEEEEec-------------CCCcEEEEecCC-CCCcceecCCCCCCCccCccCCCCCCCCCCCC
Q 048801 328 GAVTAIAFSPRPSAIYQLLSSS-------------DDGTCRIWDARY-SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSN 393 (1715)
Q Consensus 328 ~~VtsLafSPdg~~~~~LaSgS-------------~DGtVrIWDl~t-g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~ 393 (1715)
+.+.+++|+|+++.. +++++. .+|.+.+|++.. ++....+....
T Consensus 83 g~~~~~~~spdg~~l-~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~--------------------- 140 (365)
T 1jof_A 83 GHPRANDADTNTRAI-FLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE--------------------- 140 (365)
T ss_dssp SSGGGGCTTSCCEEE-EEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEE---------------------
T ss_pred CCCccEEECCCCCEE-EEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEE---------------------
Confidence 335678999998621 244543 689999999973 44322221100
Q ss_pred CCCCcceeEEEEccCCCeEEEec-CCCeEEEEeCC-CCCccCCCCCceeeeeec--CCCCCeeEEEEccCcccccccccc
Q 048801 394 GLQSHQILCCAYNANGTVFVTGS-SDTFARVWSAC-KSSVEDSEQPIHELDVLS--GHENDVNYVQFSGCAVASRSAMSD 469 (1715)
Q Consensus 394 ~~h~~~VtslafSpdG~~LatGs-~DG~IrVWDl~-t~~~~~~~~~~~~l~~l~--gH~~~V~sLafspdg~as~~~~~~ 469 (1715)
..+...+.+++|+|+|++|+++. .++.|++|++. +++. ..+..+. .|...+..++|+|++
T Consensus 141 ~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~-------~~~~~~~~~~~g~~p~~~~~spdg--------- 204 (365)
T 1jof_A 141 YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV-------ELVGSVDAPDPGDHPRWVAMHPTG--------- 204 (365)
T ss_dssp CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE-------EEEEEEECSSTTCCEEEEEECTTS---------
T ss_pred eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE-------EEeeeEecCCCCCCCCEeEECCCC---------
Confidence 01234588999999999887765 46899999997 4432 1222232 245678999999987
Q ss_pred cccccccccccCCcccCceEEEEc-CCCeEEEEecCC--CccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCC
Q 048801 470 AFKEENVPKFKNSWFCHDNIVTCS-RDGSAIIWIPRS--RRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPR 546 (1715)
Q Consensus 470 ~~~~~~~~~~~~s~~~~~~LaSgS-~DGsIrIWDl~t--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~ 546 (1715)
++|++++ .++.|.+|++.. ++..... . .+...+. ...++..
T Consensus 205 -----------------~~l~v~~~~~~~v~v~~~~~~~g~~~~~~----~--~~~~~~~-------------~~~g~~~ 248 (365)
T 1jof_A 205 -----------------NYLYALMEAGNRICEYVIDPATHMPVYTH----H--SFPLIPP-------------GIPDRDP 248 (365)
T ss_dssp -----------------SEEEEEETTTTEEEEEEECTTTCCEEEEE----E--EEESSCT-------------TCCCBCT
T ss_pred -----------------CEEEEEECCCCeEEEEEEeCCCCcEEEcc----c--eEEcCCC-------------CcCCccc
Confidence 5565554 578999998752 2210000 0 0000000 0001111
Q ss_pred ------CeeEEE-eCCCCCEEEEEecCC------eEEEEECC-CCceEEE---EecCCCCeEEEEEccC--CCcEEEEEe
Q 048801 547 ------GVNMIV-WSLDNRFVLAAIMDC------RICVWNAV-DGSLVHS---LTGHSASSYVLDVHPF--NPRIAMSAG 607 (1715)
Q Consensus 547 ------~Vtsla-fSPDG~~LaTgs~DG------tI~IWDl~-sg~~l~t---L~gH~~~V~sLafSP~--dg~lLaSgs 607 (1715)
.+..++ |+|||++|+++..+. .|.+|++. ++++... +..+...+..++|+|. ++++|++++
T Consensus 249 ~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~ 328 (365)
T 1jof_A 249 ETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD 328 (365)
T ss_dssp TTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC
T ss_pred ccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEE
Confidence 578899 999999988766432 89999996 6765442 3345555678899994 456666666
Q ss_pred C-CCcEEEEECCCC
Q 048801 608 Y-DGRTIVWDIWEG 620 (1715)
Q Consensus 608 ~-DGtI~VWDl~tg 620 (1715)
. ++.|.||++...
T Consensus 329 ~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 329 DQEGWLEIYRWKDE 342 (365)
T ss_dssp SSSCEEEEEEEETT
T ss_pred cCCCeEEEEEEchh
Confidence 5 589999998765
No 171
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.62 E-value=3.3e-14 Score=171.61 Aligned_cols=278 Identities=8% Similarity=0.036 Sum_probs=178.1
Q ss_pred EEEEEeCC--CeeEEEEC--CCCCceEE--Ee-CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecC-CCCCcceecC
Q 048801 299 LVASASND--FVIRVWRL--PDGLPISV--LR-GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR-YSQYSPRIYL 370 (1715)
Q Consensus 299 lLASGS~D--GtIrVWDl--~tg~~l~~--L~-gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~-tg~~l~~i~~ 370 (1715)
+|++|+.. +.|.+|++ .++..... .. .....+..++|+|++. +|++++.+ .|.+|++. +++.......
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~---~l~~~~~~-~v~~~~~~~~g~~~~~~~~ 79 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERK---NIYGAAMK-KWSSFAVKSPTEIVHEASH 79 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSS---EEEEEEBT-EEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCC---EEEEEccc-eEEEEEECCCCCEEEeeEe
Confidence 45566553 56887765 45543221 11 2344688999999997 77787777 89999997 6654322111
Q ss_pred CCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCe--EEEec-------------CCCeEEEEeCCC-CCccCC
Q 048801 371 PKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTV--FVTGS-------------SDTFARVWSACK-SSVEDS 434 (1715)
Q Consensus 371 ~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~--LatGs-------------~DG~IrVWDl~t-~~~~~~ 434 (1715)
+. ...+.+++|+|+|++ ++++. .+|.+.+|++.. +++
T Consensus 80 ~~------------------------~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~--- 132 (365)
T 1jof_A 80 PI------------------------GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKL--- 132 (365)
T ss_dssp EC------------------------CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCE---
T ss_pred ec------------------------CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcC---
Confidence 00 011345889999984 55553 689999999963 321
Q ss_pred CCCceeeeeec-CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEc-CCCeEEEEecC-CCccCcc
Q 048801 435 EQPIHELDVLS-GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-RDGSAIIWIPR-SRRSHGK 511 (1715)
Q Consensus 435 ~~~~~~l~~l~-gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-~DGsIrIWDl~-t~~~~~~ 511 (1715)
...+..+. .+...+.+++|+|++ ++|+++. .++.|.+|++. +++...
T Consensus 133 ---~~~~~~~~~~~~~~~~~~~~spdG--------------------------~~l~~~~~~~~~v~~~~~~~~g~~~~- 182 (365)
T 1jof_A 133 ---EKNVQNYEYQENTGIHGMVFDPTE--------------------------TYLYSADLTANKLWTHRKLASGEVEL- 182 (365)
T ss_dssp ---EEEEEEEECCTTCCEEEEEECTTS--------------------------SEEEEEETTTTEEEEEEECTTSCEEE-
T ss_pred ---cceEeeEEeCCCCcceEEEECCCC--------------------------CEEEEEcCCCCEEEEEEECCCCCEEE-
Confidence 11122211 245678999999987 5565544 57899999997 433110
Q ss_pred cccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEec-CCeEEEEECC--CCceEE---EEe-
Q 048801 512 VGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM-DCRICVWNAV--DGSLVH---SLT- 584 (1715)
Q Consensus 512 ~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~-DGtI~IWDl~--sg~~l~---tL~- 584 (1715)
. ..+ ....+...+..++|+|||++|++++. ++.|.+|++. +|++.. .+.
T Consensus 183 ~------~~~------------------~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~ 238 (365)
T 1jof_A 183 V------GSV------------------DAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL 238 (365)
T ss_dssp E------EEE------------------ECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES
T ss_pred e------eeE------------------ecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEc
Confidence 0 000 00112456889999999999988775 6899999865 566532 232
Q ss_pred ------cCCC------CeEEEE-EccCCCcEEEEEeC-CC-----cEEEEECC-CCceEEE---EEcccceEEEEEEcC-
Q 048801 585 ------GHSA------SSYVLD-VHPFNPRIAMSAGY-DG-----RTIVWDIW-EGTPIRI---YEIGRFKLVDGKFSP- 640 (1715)
Q Consensus 585 ------gH~~------~V~sLa-fSP~dg~lLaSgs~-DG-----tI~VWDl~-tgk~l~t---l~~h~~~V~svafSP- 640 (1715)
+|.. .+..++ |+| ++++|++++. ++ +|.+|++. +|+.... +..+...+..++|+|
T Consensus 239 ~~~~~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~ 317 (365)
T 1jof_A 239 IPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPC 317 (365)
T ss_dssp SCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEEC
T ss_pred CCCCcCCcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCC
Confidence 1222 488999 999 5555554443 33 89999996 6765442 332344566789999
Q ss_pred --CCCEEEEEeCC-CeEEEEECCCC
Q 048801 641 --DGTSIVLSDDV-GQIYLLNTGQG 662 (1715)
Q Consensus 641 --DG~~LAsgs~D-G~I~IWdl~tG 662 (1715)
||++|++++.+ +.|.||++...
T Consensus 318 ~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 318 PWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999998764 89999998654
No 172
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.61 E-value=4.6e-15 Score=178.56 Aligned_cols=298 Identities=10% Similarity=-0.020 Sum_probs=192.3
Q ss_pred EEEeCCCCcEEEEecCCCCC-----eEEEEECCCCCEEEEEeCC---CeeEEEECCCCCceEEEeCCCCCeEEEEecCCC
Q 048801 268 KIWSMETAFCLASCRGHEGD-----ITDLAVSSNNTLVASASND---FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRP 339 (1715)
Q Consensus 268 rIWDl~tgk~l~tL~gHs~~-----VtsLafSpDg~lLASGS~D---GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg 339 (1715)
..+|..++..+..+..+... +.+++|||||++|+.+... ..|.+||+.+++......++......+.|+|++
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg 92 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE 92 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC
Confidence 34578888888888766444 7788999999998877553 468888998877544433333223347899999
Q ss_pred CcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC
Q 048801 340 SAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT 419 (1715)
Q Consensus 340 ~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG 419 (1715)
. +|+.++.++.|.+||+.+++.......+ . .|+++|+.|+....+.
T Consensus 93 ~---~l~~~~~~~~l~~~d~~~~~~~~~~~~~-------------------------~------~~~~~g~~l~~~~~~~ 138 (396)
T 3c5m_A 93 R---AFFYVKNELNLMKVDLETLEEQVIYTVD-------------------------E------EWKGYGTWVANSDCTK 138 (396)
T ss_dssp S---EEEEEETTTEEEEEETTTCCEEEEEECC-------------------------T------TEEEEEEEEECTTSSE
T ss_pred C---EEEEEEcCCcEEEEECCCCCcEEEEecc-------------------------c------ccCCCCCEEEeccCCc
Confidence 8 7888888889999999876533221100 0 1667777777776665
Q ss_pred eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEE-----cC
Q 048801 420 FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTC-----SR 494 (1715)
Q Consensus 420 ~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSg-----S~ 494 (1715)
...+|.. .+.|+|++ +.++.+ ..
T Consensus 139 ~~~~~~~--------------------------~~~~spdg--------------------------~~~~~~~~~~~~~ 166 (396)
T 3c5m_A 139 LVGIEIL--------------------------KRDWQPLT--------------------------SWEKFAEFYHTNP 166 (396)
T ss_dssp EEEEEEE--------------------------GGGCCCCC--------------------------SHHHHHHHHHTCC
T ss_pred ccccccc--------------------------ccccCCCC--------------------------cceeeeeeccCCC
Confidence 5554431 11234443 222222 34
Q ss_pred CCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CCCEEEEEecC------C
Q 048801 495 DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVLAAIMD------C 567 (1715)
Q Consensus 495 DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~LaTgs~D------G 567 (1715)
+..|.+||+.+++. ..+..+...+..++|+| +|..|+.++.+ .
T Consensus 167 ~~~l~~~d~~~g~~------------------------------~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~ 216 (396)
T 3c5m_A 167 TCRLIKVDIETGEL------------------------------EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDA 216 (396)
T ss_dssp CEEEEEEETTTCCE------------------------------EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSC
T ss_pred cceEEEEECCCCcE------------------------------EeeccCCcccccceECCCCCCEEEEEecCCCCCCCc
Confidence 66788998876431 11122345678899999 88877776643 3
Q ss_pred eEEEEECCCCceEEEEecC--CCCeEEEEEccCCCcEEEEEeCC----CcEEEEECCCCceEEEEEcccceEEEEEEcC-
Q 048801 568 RICVWNAVDGSLVHSLTGH--SASSYVLDVHPFNPRIAMSAGYD----GRTIVWDIWEGTPIRIYEIGRFKLVDGKFSP- 640 (1715)
Q Consensus 568 tI~IWDl~sg~~l~tL~gH--~~~V~sLafSP~dg~lLaSgs~D----GtI~VWDl~tgk~l~tl~~h~~~V~svafSP- 640 (1715)
.|++|++..++.. .+..+ ...+..++|+|++..+++++..+ +.|++||+.+++....... .. .. +.|+|
T Consensus 217 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~-~~~s~~ 292 (396)
T 3c5m_A 217 RMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-PP-CS-HLMSNF 292 (396)
T ss_dssp CCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-CS-EE-EEEECS
T ss_pred eEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-CC-CC-CCccCC
Confidence 6899998766543 33333 23578899999544444443322 4499999998876554332 22 23 89999
Q ss_pred CCCEEEEEe----------------CCCeEEEEECCCCcccccc----------------ccceeecCCCccEEEcC
Q 048801 641 DGTSIVLSD----------------DVGQIYLLNTGQGESQKDA----------------KYDQFFLGDYRPLIRDS 685 (1715)
Q Consensus 641 DG~~LAsgs----------------~DG~I~IWdl~tGe~~k~~----------------~~~~~fs~D~r~L~~d~ 685 (1715)
||++|++++ .++.|++|++.+++...-. .....|++|++.|++..
T Consensus 293 dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s 369 (396)
T 3c5m_A 293 DGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTS 369 (396)
T ss_dssp SSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred CCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEe
Confidence 999888764 3478999999887643211 22346788888877653
No 173
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.61 E-value=8.9e-13 Score=168.98 Aligned_cols=338 Identities=12% Similarity=0.065 Sum_probs=229.6
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC--CCCceEEEeCCCCCe
Q 048801 253 RSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP--DGLPISVLRGHTGAV 330 (1715)
Q Consensus 253 pDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~--tg~~l~~L~gH~~~V 330 (1715)
+.+.++++...++.|.++|..+++.+.++... ..+..++|+|||++|++++.|+.|.+||+. +++.+..+... ...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEA 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCC
Confidence 44556777788999999999999999988743 357799999999999999999999999996 88888888753 346
Q ss_pred EEEEec----CCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCC-CcceeEEEE
Q 048801 331 TAIAFS----PRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ-SHQILCCAY 405 (1715)
Q Consensus 331 tsLafS----Pdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h-~~~Vtslaf 405 (1715)
..++|+ |+++. .+++...+++|.++|..+.+.+..+....... .....| ...+..+.+
T Consensus 243 ~~ia~s~~~~pDGk~--l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~---------------~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 243 RSIETSKMEGWEDKY--AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY---------------DEQEYHPEPRVAAILA 305 (567)
T ss_dssp EEEEECCSTTCTTTE--EEEEEEETTEEEEEETTTCCEEEEEECCEECT---------------TTCCEESCCCEEEEEE
T ss_pred ceeEEccccCCCCCE--EEEEEccCCeEEEEECCCCcEEEEEecccccc---------------ccccccCCCceEEEEE
Confidence 899999 69883 44555567999999998888776654321100 000001 124778888
Q ss_pred ccCCCe-EEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcc
Q 048801 406 NANGTV-FVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWF 484 (1715)
Q Consensus 406 SpdG~~-LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~ 484 (1715)
++++.. ++.....|.|.++|...... ..+..+ ........+.|+|++
T Consensus 306 s~~~~~~vv~~~~~g~v~~vd~~~~~~-------~~v~~i-~~~~~~~d~~~~pdg------------------------ 353 (567)
T 1qks_A 306 SHYRPEFIVNVKETGKILLVDYTDLNN-------LKTTEI-SAERFLHDGGLDGSH------------------------ 353 (567)
T ss_dssp CSSSSEEEEEETTTTEEEEEETTCSSE-------EEEEEE-ECCSSEEEEEECTTS------------------------
T ss_pred cCCCCEEEEEecCCCeEEEEecCCCcc-------ceeeee-eccccccCceECCCC------------------------
Confidence 887654 44556679999999865321 111122 223356678899886
Q ss_pred cCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCC-CeeEEEeCCCCCEE-EE
Q 048801 485 CHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPR-GVNMIVWSLDNRFV-LA 562 (1715)
Q Consensus 485 ~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~-~VtslafSPDG~~L-aT 562 (1715)
..+++++..++.|.++|+.+++....+. + + ....|.+ ++. + ++|++..+ ++
T Consensus 354 -r~~~va~~~sn~V~ViD~~t~kl~~~i~---------v-----------g----g~~Phpg~g~~-~-~~p~~g~v~~t 406 (567)
T 1qks_A 354 -RYFITAANARNKLVVIDTKEGKLVAIED---------T-----------G----GQTPHPGRGAN-F-VHPTFGPVWAT 406 (567)
T ss_dssp -CEEEEEEGGGTEEEEEETTTTEEEEEEE---------C-----------S----SSSBCCTTCEE-E-EETTTEEEEEE
T ss_pred -CEEEEEeCCCCeEEEEECCCCcEEEEEe---------c-----------c----CcCCCCcccee-e-ECCCCCcEEEe
Confidence 2345566678999999999765322210 0 0 0112332 232 2 57875555 44
Q ss_pred Ee-cCCeEEEEECCC-------CceEEEEecCCCCeEEEEEccCCCcEEEEEeC-------CCcEEEEECCCC-----c-
Q 048801 563 AI-MDCRICVWNAVD-------GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGY-------DGRTIVWDIWEG-----T- 621 (1715)
Q Consensus 563 gs-~DGtI~IWDl~s-------g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~-------DGtI~VWDl~tg-----k- 621 (1715)
+. .++.|.|+|..+ .+.++++......-..|.++| +++.|..... .++|.|+|+.+. .
T Consensus 407 ~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p-~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~ 485 (567)
T 1qks_A 407 SHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHP-NSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDP 485 (567)
T ss_dssp EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCC
T ss_pred CCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCC-CCCeEEEecCCCCCcccCceEEEEECCcccccccCC
Confidence 43 468999999988 678888876644445678899 4454444332 359999999876 2
Q ss_pred eEEEEEc--------ccceEEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCccccccc
Q 048801 622 PIRIYEI--------GRFKLVDGKFSPDGTSIVLSD-----DVGQIYLLNTGQGESQKDAK 669 (1715)
Q Consensus 622 ~l~tl~~--------h~~~V~svafSPDG~~LAsgs-----~DG~I~IWdl~tGe~~k~~~ 669 (1715)
.+..+.. ....+..+.|+|||+.|.++. .++.|.|+|..+++.++..+
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 486 EFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp CEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 2244432 234688999999999988763 37999999999998765444
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.60 E-value=3.4e-14 Score=184.72 Aligned_cols=302 Identities=12% Similarity=-0.006 Sum_probs=198.2
Q ss_pred EecCCCCCeEEEEECCCCCEEEEE--eCCCeeEEEECCCCCceEEEeCCCCCeE---------EEEec--CCCCcceE-E
Q 048801 280 SCRGHEGDITDLAVSSNNTLVASA--SNDFVIRVWRLPDGLPISVLRGHTGAVT---------AIAFS--PRPSAIYQ-L 345 (1715)
Q Consensus 280 tL~gHs~~VtsLafSpDg~lLASG--S~DGtIrVWDl~tg~~l~~L~gH~~~Vt---------sLafS--Pdg~~~~~-L 345 (1715)
.+.+|...|..++|++++.++++. +.++...||....+.....+..|...+. ...|+ |+++ . |
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~---~~l 94 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGG---PLL 94 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSS---CEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCC---eEE
Confidence 456788999999999887777776 5588999999766666777877776666 66665 9987 4 4
Q ss_pred EEec-CCCcEEEEecC--C-CCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC---
Q 048801 346 LSSS-DDGTCRIWDAR--Y-SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD--- 418 (1715)
Q Consensus 346 aSgS-~DGtVrIWDl~--t-g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D--- 418 (1715)
+.++ .+..|.+|++. + +.. ..+... ....+...+.+++|+|||+.|++++.+
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~-~~l~~~--------------------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~ 153 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVP-RPLTPV--------------------SAVGGGLRWADPVLLPERGEVWCMAEEFTG 153 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCC-EECSCC--------------------CCSTTCEEEEEEEEETTTTEEEEEEEEECS
T ss_pred EEEECCCCeEEEEcCCCCCCCCC-EeccCC--------------------ccCCCCccccCcEECCCCCEEEEEEecccC
Confidence 4443 35667777765 2 321 111100 001134568899999999999988876
Q ss_pred -------CeEEEEeCCCCCccCCCCCceeeeeec-CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEE
Q 048801 419 -------TFARVWSACKSSVEDSEQPIHELDVLS-GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIV 490 (1715)
Q Consensus 419 -------G~IrVWDl~t~~~~~~~~~~~~l~~l~-gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~La 490 (1715)
..|++|++.+.... . ......+. .+...+..++|+|++ +.|+
T Consensus 154 ~~~~~~~~~i~~~~~~~~~~~---~-~~~~~~l~~~~~~~~~~~~~SpDG--------------------------~~la 203 (662)
T 3azo_A 154 EGPSDVRRFLAAVPLDGSAAA---D-RSAVRELSDDAHRFVTGPRLSPDG--------------------------RQAV 203 (662)
T ss_dssp SSTTCEEEEEEEEETTSTTTT---C-GGGSEESSCSCSSEECCCEECTTS--------------------------SEEE
T ss_pred CCCCCceeEEEEEECCCCccc---c-CCceeEEEecCCCcccCceECCCC--------------------------CEEE
Confidence 58999999761000 0 00123344 555678889999997 6777
Q ss_pred EEcCC--------CeEEEEecC-CCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEE
Q 048801 491 TCSRD--------GSAIIWIPR-SRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL 561 (1715)
Q Consensus 491 SgS~D--------GsIrIWDl~-t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~La 561 (1715)
.++.+ ..|.+||+. ++... ........+...+..++|+|||++++
T Consensus 204 ~~~~~~~~~~~~~~~i~~~d~~~~g~~~--------------------------~~~~l~~~~~~~~~~~~~spdg~l~~ 257 (662)
T 3azo_A 204 WLAWDHPRMPWEGTELKTARVTEDGRFA--------------------------DTRTLLGGPEEAIAQAEWAPDGSLIV 257 (662)
T ss_dssp EEEECTTCCTTTCEEEEEEEECTTSCEE--------------------------EEEEEEEETTBCEEEEEECTTSCEEE
T ss_pred EEECCCCCCCCCCcEEEEEEECCCCccc--------------------------ccEEeCCCCCceEcceEECCCCeEEE
Confidence 66644 479999987 33100 00011122356788999999999888
Q ss_pred EEecCC--eEEEEECCCCceEEEEecCCCC--------eEEEEEccCCCcEEEEEeCCCcEEEE--ECCCCceEEEEEcc
Q 048801 562 AAIMDC--RICVWNAVDGSLVHSLTGHSAS--------SYVLDVHPFNPRIAMSAGYDGRTIVW--DIWEGTPIRIYEIG 629 (1715)
Q Consensus 562 Tgs~DG--tI~IWDl~sg~~l~tL~gH~~~--------V~sLafSP~dg~lLaSgs~DGtI~VW--Dl~tgk~l~tl~~h 629 (1715)
++..++ .|++||+.+++....+..+... +..++|+| +++++++++. +.++|| |+.+++ +..+..+
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~ 334 (662)
T 3azo_A 258 ATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA-NGLIAVVHGK-GAAVLGILDPESGE-LVDAAGP 334 (662)
T ss_dssp EECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT-TSCEEEEEBS-SSCEEEEEETTTTE-EEECCSS
T ss_pred EECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeC-CCEEEEEEEc-CccEEEEEECCCCc-EEEecCC
Confidence 888888 6777777677665444433322 46788888 7788889888 999999 555555 6667666
Q ss_pred cceEEEEEEcCCCCEEE--EEeCCC--eEEEEECCCCccc
Q 048801 630 RFKLVDGKFSPDGTSIV--LSDDVG--QIYLLNTGQGESQ 665 (1715)
Q Consensus 630 ~~~V~svafSPDG~~LA--sgs~DG--~I~IWdl~tGe~~ 665 (1715)
...+..+ |++++..++ +++.+. .|++|++.+++..
T Consensus 335 ~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 335 WTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRAR 373 (662)
T ss_dssp CCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred CCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence 6667665 145555444 444443 6777787777543
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.59 E-value=4.1e-13 Score=159.94 Aligned_cols=256 Identities=10% Similarity=0.063 Sum_probs=182.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC------------------------CcEEEEeCCCCcEEEEec-CCCCCeEEEEECCCC
Q 048801 243 RDAVYCAIFDRSGRFVITGSDD------------------------RLVKIWSMETAFCLASCR-GHEGDITDLAVSSNN 297 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~D------------------------GtIrIWDl~tgk~l~tL~-gHs~~VtsLafSpDg 297 (1715)
-+.|.+|+++++|+++++.+.+ +.|.+||..+++.+..+. ++-.....|+++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999999988877 479999999999887765 455689999999999
Q ss_pred CEEEEEeCCCeeEEEECCCCC-ceEEE---------eCCCCCeEEEEecC-CCCcceEEEEec-CCCcEEEEecCCCCCc
Q 048801 298 TLVASASNDFVIRVWRLPDGL-PISVL---------RGHTGAVTAIAFSP-RPSAIYQLLSSS-DDGTCRIWDARYSQYS 365 (1715)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tg~-~l~~L---------~gH~~~VtsLafSP-dg~~~~~LaSgS-~DGtVrIWDl~tg~~l 365 (1715)
+++++...++.|++|+..... .+..+ .++......|+|+| ++. ++++.+ .++.|++|+ .++..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~---lyv~d~~~~~~I~~~~-~~g~~~ 178 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA---VFVSDGYCNSRIVQFS-PSGKFV 178 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC---EEEEECSSCCEEEEEC-TTSCEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe---EEEEeCCCCCeEEEEc-CCCCEE
Confidence 999888889999999975432 56665 24455789999999 565 566665 689999999 455544
Q ss_pred ceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC-CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee
Q 048801 366 PRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN-GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL 444 (1715)
Q Consensus 366 ~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd-G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l 444 (1715)
..+...... ......+-.....++++|+ |.++++...++.|++|+..+++. +..+
T Consensus 179 ~~~~~~g~~---------------~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~---------~~~~ 234 (329)
T 3fvz_A 179 TQWGEESSG---------------SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF---------VREI 234 (329)
T ss_dssp EEECEECCS---------------SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE---------EEEE
T ss_pred EEeccCCCC---------------CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE---------EEEE
Confidence 433211100 0000112234789999998 88888888899999999875432 2222
Q ss_pred --cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccccccccc
Q 048801 445 --SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLK 522 (1715)
Q Consensus 445 --~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~ 522 (1715)
..+...+..++|+| + .++
T Consensus 235 ~~~~~~~~~~~~~~~p-g---------------------------~~~-------------------------------- 254 (329)
T 3fvz_A 235 KHASFGRNVFAISYIP-G---------------------------FLF-------------------------------- 254 (329)
T ss_dssp CCTTTTTCEEEEEEET-T---------------------------EEE--------------------------------
T ss_pred eccccCCCcceeeecC-C---------------------------EEE--------------------------------
Confidence 23344555555555 2 111
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe---cCCCCeEEEEEccCC
Q 048801 523 VPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT---GHSASSYVLDVHPFN 599 (1715)
Q Consensus 523 ~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~---gH~~~V~sLafSP~d 599 (1715)
..+|..+++...+..|++|++.+++.+..+. ++...+.+|+++| +
T Consensus 255 -------------------------------~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-d 302 (329)
T 3fvz_A 255 -------------------------------AVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-D 302 (329)
T ss_dssp -------------------------------EEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT-T
T ss_pred -------------------------------EeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC-C
Confidence 1122222333345689999999999888883 6777899999999 5
Q ss_pred CcEEEEEeCCCcEEEEECC
Q 048801 600 PRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 600 g~lLaSgs~DGtI~VWDl~ 618 (1715)
+.++++...+++|++|++.
T Consensus 303 G~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 303 GTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp SEEEEEESSSCCEEEEEEE
T ss_pred CCEEEEECCCCEEEEEeCC
Confidence 6888999999999999974
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.56 E-value=3.6e-13 Score=159.87 Aligned_cols=260 Identities=12% Similarity=0.083 Sum_probs=172.6
Q ss_pred CCeEEEEEcCCCCEEEEEe---------CCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCC---C--ee
Q 048801 244 DAVYCAIFDRSGRFVITGS---------DDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASND---F--VI 309 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS---------~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~D---G--tI 309 (1715)
..+..+++ ||++|+... .++.|.+|++.+++... + ..+.+++|||||++||.++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 34666777 888887652 25789999999887543 3 568899999999999988754 3 48
Q ss_pred EEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecC---------------------------CCcEEEEecCCC
Q 048801 310 RVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD---------------------------DGTCRIWDARYS 362 (1715)
Q Consensus 310 rVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~---------------------------DGtVrIWDl~tg 362 (1715)
.+|++.+++.......+ . +.+++|+|++. .|+.++. ...|.+||+.++
T Consensus 88 ~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~---~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 162 (347)
T 2gop_A 88 WVADLETLSSKKILEAK-N-IRSLEWNEDSR---KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE 162 (347)
T ss_dssp EEEETTTTEEEEEEEES-E-EEEEEECTTSS---EEEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred EEEECCCCceEEEEcCC-C-ccceeECCCCC---EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence 88898887765555433 4 99999999998 5555542 256888998876
Q ss_pred CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC-------eEEEEeCCCCCccCCC
Q 048801 363 QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT-------FARVWSACKSSVEDSE 435 (1715)
Q Consensus 363 ~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG-------~IrVWDl~t~~~~~~~ 435 (1715)
+.+..+.. . .+..++|+|+| +++++..++ ...||.+.+++
T Consensus 163 ~~~~~l~~--------------------------~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~----- 209 (347)
T 2gop_A 163 EVIEEFEK--------------------------P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK----- 209 (347)
T ss_dssp EEEEEEEE--------------------------E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-----
T ss_pred eEEeeecC--------------------------C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-----
Confidence 64222211 1 36789999999 777775432 34455443321
Q ss_pred CCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC--------CeEEEEecCCCc
Q 048801 436 QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD--------GSAIIWIPRSRR 507 (1715)
Q Consensus 436 ~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D--------GsIrIWDl~t~~ 507 (1715)
...+..+ ..+..+ +|++ +.|+.++.+ ..|.+|| +++
T Consensus 210 -----~~~l~~~-~~~~~~--spdg--------------------------~~l~~~~~~~~~~~~~~~~l~~~d--~~~ 253 (347)
T 2gop_A 210 -----EEKMFEK-VSFYAV--DSDG--------------------------ERILLYGKPEKKYMSEHNKLYIYD--GKE 253 (347)
T ss_dssp -----EEEEEEE-ESEEEE--EECS--------------------------SCEEEEECCSSSCCCSSCEEEEEC--SSC
T ss_pred -----eEEeccC-cceeeE--CCCC--------------------------CEEEEEEccccCCccccceEEEEC--CCc
Confidence 1222223 344443 7776 556655543 3677776 321
Q ss_pred cCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeE-EEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecC
Q 048801 508 SHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNM-IVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH 586 (1715)
Q Consensus 508 ~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vts-lafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH 586 (1715)
. ......+...+.. ++|+ || ++++++.++.++|| +.+++. ..+..+
T Consensus 254 ~-----------------------------~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-~~~~~~ 300 (347)
T 2gop_A 254 V-----------------------------MGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-KPIAKG 300 (347)
T ss_dssp E-----------------------------EESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE-EEEECS
T ss_pred e-----------------------------EeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce-EEEecC
Confidence 0 1111233456775 8999 88 88999999999999 876665 444556
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCcE-EEEECCCCc
Q 048801 587 SASSYVLDVHPFNPRIAMSAGYDGRT-IVWDIWEGT 621 (1715)
Q Consensus 587 ~~~V~sLafSP~dg~lLaSgs~DGtI-~VWDl~tgk 621 (1715)
...|.+++|+| .++++++.++.. .||.+. ++
T Consensus 301 ~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 301 RHWIMGFDVDE---IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp SSEEEEEEESS---SEEEEEECSSSCCEEEEES-SS
T ss_pred CCeEEeeeeeC---cEEEEEcCCCChHHheEeC-Cc
Confidence 78899999998 577777777765 777776 54
No 177
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.56 E-value=6.2e-13 Score=157.21 Aligned_cols=278 Identities=11% Similarity=-0.034 Sum_probs=192.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL 323 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L 323 (1715)
..|.+++|++++..++..+.++.+++| .+.....+..+...+.+++|+++|++++++..++.|.+||..+++....+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 346778899988888877888999999 45677778888888999999999998888888999999999888766555
Q ss_pred eCCCCCeEEEEecCCCCcceEEEEecCC----CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcc
Q 048801 324 RGHTGAVTAIAFSPRPSAIYQLLSSSDD----GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ 399 (1715)
Q Consensus 324 ~gH~~~VtsLafSPdg~~~~~LaSgS~D----GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~ 399 (1715)
..+...+.+++|++++. ++++...+ +.|.+||..++.....+.. ......
T Consensus 83 ~~~~~~~~~i~~~~dg~---l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~-----------------------~~~~~~ 136 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDGR---LFVCYLGDFKSTGGIFAATENGDNLQDIIED-----------------------LSTAYC 136 (333)
T ss_dssp ECSSSSEEEEEECTTSC---EEEEECTTSSSCCEEEEECTTSCSCEEEECS-----------------------SSSCCC
T ss_pred eCCCCCcceEEECCCCc---EEEEeCCCCCCCceEEEEeCCCCEEEEEEcc-----------------------CccCCc
Confidence 45678899999999986 56666555 6899999887654322110 001345
Q ss_pred eeEEEEccCCCeEEEecC------CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccc
Q 048801 400 ILCCAYNANGTVFVTGSS------DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKE 473 (1715)
Q Consensus 400 VtslafSpdG~~LatGs~------DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~ 473 (1715)
+.+++++|+|+++++... .+.|..|+..+++. ..+..+...+..++|++++
T Consensus 137 ~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~----------~~~~~~~~~~~~i~~~~dg------------- 193 (333)
T 2dg1_A 137 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV----------TPIIQNISVANGIALSTDE------------- 193 (333)
T ss_dssp EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE----------EEEEEEESSEEEEEECTTS-------------
T ss_pred ccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE----------EEeecCCCcccceEECCCC-------------
Confidence 889999999988877653 35666666544321 1122223357889999986
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCC-CccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEE
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS-RRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIV 552 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsla 552 (1715)
..++++.+.++.|.+|++.+ +.....+. ... ...+.. ...+..++
T Consensus 194 ------------~~l~v~~~~~~~i~~~d~~~~g~~~~~~~---~~~------------------~~~~~~-~~~~~~i~ 239 (333)
T 2dg1_A 194 ------------KVLWVTETTANRLHRIALEDDGVTIQPFG---ATI------------------PYYFTG-HEGPDSCC 239 (333)
T ss_dssp ------------SEEEEEEGGGTEEEEEEECTTSSSEEEEE---EEE------------------EEECCS-SSEEEEEE
T ss_pred ------------CEEEEEeCCCCeEEEEEecCCCcCccccc---ceE------------------EEecCC-CCCCCceE
Confidence 12455666789999999863 11110000 000 000011 13567899
Q ss_pred eCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCC------CeEEEEEccCCCcEEEEEeC
Q 048801 553 WSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSA------SSYVLDVHPFNPRIAMSAGY 608 (1715)
Q Consensus 553 fSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~------~V~sLafSP~dg~lLaSgs~ 608 (1715)
++++|+++++...++.|.+||. +++.+..+..+.. .+.+++|+|+++.+++++..
T Consensus 240 ~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 240 IDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 9999998888878899999998 6777777765443 68899999854455555443
No 178
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.55 E-value=7.2e-13 Score=156.67 Aligned_cols=270 Identities=13% Similarity=0.126 Sum_probs=188.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCc
Q 048801 286 GDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS 365 (1715)
Q Consensus 286 ~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l 365 (1715)
..|.+++|++++..++..+.++.+++| .+.....+..+...+.+++|++++. +++++..++.|.+||..+++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~---l~~~~~~~~~i~~~d~~~~~~~ 79 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQ---LFLLDVFEGNIFKINPETKEIK 79 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSC---EEEEETTTCEEEEECTTTCCEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCC---EEEEECCCCEEEEEeCCCCcEE
Confidence 457788999998888887888999999 4566777777888889999999986 6778888999999999877643
Q ss_pred ceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC----CeEEEEeCCCCCccCCCCCceee
Q 048801 366 PRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD----TFARVWSACKSSVEDSEQPIHEL 441 (1715)
Q Consensus 366 ~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D----G~IrVWDl~t~~~~~~~~~~~~l 441 (1715)
.... .+...+.+++++++|++++++..+ +.|.+||..++.. ..+
T Consensus 80 ~~~~-------------------------~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~-------~~~ 127 (333)
T 2dg1_A 80 RPFV-------------------------SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL-------QDI 127 (333)
T ss_dssp EEEE-------------------------CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC-------EEE
T ss_pred EEee-------------------------CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE-------EEE
Confidence 2210 013458999999999988877666 6899999876532 101
Q ss_pred eeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcC------CCeEEEEecCCCccCcccccc
Q 048801 442 DVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR------DGSAIIWIPRSRRSHGKVGRW 515 (1715)
Q Consensus 442 ~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~------DGsIrIWDl~t~~~~~~~~~~ 515 (1715)
.....+...+.++++++++ ..+++... .+.|..|+..+++.
T Consensus 128 ~~~~~~~~~~~~i~~d~~g--------------------------~l~v~~~~~~~~~~~~~l~~~~~~~~~~------- 174 (333)
T 2dg1_A 128 IEDLSTAYCIDDMVFDSKG--------------------------GFYFTDFRGYSTNPLGGVYYVSPDFRTV------- 174 (333)
T ss_dssp ECSSSSCCCEEEEEECTTS--------------------------CEEEEECCCBTTBCCEEEEEECTTSCCE-------
T ss_pred EccCccCCcccceEECCCC--------------------------CEEEEeccccccCCCceEEEEeCCCCEE-------
Confidence 1111244578899999876 45555443 34555565543221
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEE-ecCCeEEEEECCC-CceEEEE--------ec
Q 048801 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAA-IMDCRICVWNAVD-GSLVHSL--------TG 585 (1715)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTg-s~DGtI~IWDl~s-g~~l~tL--------~g 585 (1715)
..+......+..++|+|+|++|+++ +.++.|.+|++.+ +..+..+ .+
T Consensus 175 -----------------------~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~ 231 (333)
T 2dg1_A 175 -----------------------TPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG 231 (333)
T ss_dssp -----------------------EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS
T ss_pred -----------------------EEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC
Confidence 0011112246789999999866544 5678999999964 4433221 22
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccc------eEEEEEEcCCCCEEEEEeCCC
Q 048801 586 HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRF------KLVDGKFSPDGTSIVLSDDVG 652 (1715)
Q Consensus 586 H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~------~V~svafSPDG~~LAsgs~DG 652 (1715)
+ ..+..+++++ +++++++...++.|.+||. +++.+..+..+.. .+.+++|+|||..|++++.+|
T Consensus 232 ~-~~~~~i~~d~-~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 232 H-EGPDSCCIDS-DDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp S-SEEEEEEEBT-TCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred C-CCCCceEECC-CCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 2 4678899999 6677777777899999998 6777777765433 578999999998887666553
No 179
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.55 E-value=2.5e-12 Score=148.72 Aligned_cols=243 Identities=10% Similarity=0.125 Sum_probs=174.1
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe------CCCCCeEEEEec-CCCCcceEEEEec-CCCcE
Q 048801 283 GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR------GHTGAVTAIAFS-PRPSAIYQLLSSS-DDGTC 354 (1715)
Q Consensus 283 gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~------gH~~~VtsLafS-Pdg~~~~~LaSgS-~DGtV 354 (1715)
++-..+.++++++++.++++...++.|.+||.. +..+..+. +|...+.++++. +++. ++++.. .++.|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~---l~v~~~~~~~~i 102 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD---IIVTERSPTHQI 102 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE---EEEEECGGGCEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe---EEEEcCCCCCEE
Confidence 456678999999999998888889999999976 66666664 244578999994 5553 444443 38899
Q ss_pred EEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCC
Q 048801 355 RIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDS 434 (1715)
Q Consensus 355 rIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~ 434 (1715)
.+|| .+++.+..+.. .+...+.+++++++|+++++...++.|.+|+....
T Consensus 103 ~~~d-~~g~~~~~~~~------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~----- 152 (286)
T 1q7f_A 103 QIYN-QYGQFVRKFGA------------------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN----- 152 (286)
T ss_dssp EEEC-TTSCEEEEECT------------------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-----
T ss_pred EEEC-CCCcEEEEecC------------------------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-----
Confidence 9999 45554333211 11234789999999998888888899999996431
Q ss_pred CCCceeeeeec--CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccc
Q 048801 435 EQPIHELDVLS--GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKV 512 (1715)
Q Consensus 435 ~~~~~~l~~l~--gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~ 512 (1715)
.+..+. .+...+..+++++++ ..+++...++.|.+|+..... ...
T Consensus 153 -----~~~~~~~~~~~~~p~~i~~~~~g--------------------------~l~v~~~~~~~i~~~~~~g~~-~~~- 199 (286)
T 1q7f_A 153 -----VLHKFGCSKHLEFPNGVVVNDKQ--------------------------EIFISDNRAHCVKVFNYEGQY-LRQ- 199 (286)
T ss_dssp -----EEEEEECTTTCSSEEEEEECSSS--------------------------EEEEEEGGGTEEEEEETTCCE-EEE-
T ss_pred -----EEEEeCCCCccCCcEEEEECCCC--------------------------CEEEEECCCCEEEEEcCCCCE-EEE-
Confidence 122222 344568899999976 577777889999999975311 000
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC-eEEEEECCCCceEEEEecCCC--C
Q 048801 513 GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWNAVDGSLVHSLTGHSA--S 589 (1715)
Q Consensus 513 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG-tI~IWDl~sg~~l~tL~gH~~--~ 589 (1715)
+. ..++...+..++++++|+++++...++ .|.+|+. +++.+..+..+.. .
T Consensus 200 ------~~--------------------~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 252 (286)
T 1q7f_A 200 ------IG--------------------GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQ 252 (286)
T ss_dssp ------ES--------------------CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSC
T ss_pred ------Ec--------------------cCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCc
Confidence 00 001124578899999999888887776 9999995 6777777765543 4
Q ss_pred eEEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 048801 590 SYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 590 V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk 621 (1715)
+.+++++| +++++++ +.|++|++|++....
T Consensus 253 ~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 253 CFDVALMD-DGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EEEEEEET-TTEEEEE-ETTTEEEEEECSCCC
T ss_pred ceeEEECC-CCcEEEE-CCCCeEEEEEccccc
Confidence 78999999 6677777 579999999986543
No 180
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.54 E-value=2.2e-12 Score=149.28 Aligned_cols=243 Identities=10% Similarity=0.096 Sum_probs=175.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEec------CCCCCeEEEEE-CCCCCEEEEEeC-CCeeEEE
Q 048801 241 GHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR------GHEGDITDLAV-SSNNTLVASASN-DFVIRVW 312 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~------gHs~~VtsLaf-SpDg~lLASGS~-DGtIrVW 312 (1715)
+|-..+.+++++++|+++++...++.|.+||.. ++.+..+. +|...+.++++ .+++.++++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 456778999999999988888889999999987 66666664 34567899999 577777776643 8899999
Q ss_pred ECCCCCceEEEe-CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCC
Q 048801 313 RLPDGLPISVLR-GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSS 391 (1715)
Q Consensus 313 Dl~tg~~l~~L~-gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~ 391 (1715)
+ .++..+..+. .+...+.+|++.+++. ++++...++.|.+||.. ++.+..+...
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~---l~v~~~~~~~i~~~~~~-g~~~~~~~~~-------------------- 160 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGR---IIVVECKVMRVIIFDQN-GNVLHKFGCS-------------------- 160 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSC---EEEEETTTTEEEEECTT-SCEEEEEECT--------------------
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCC---EEEEECCCCEEEEEcCC-CCEEEEeCCC--------------------
Confidence 9 6777777664 3446789999999986 67777788999999964 3333222110
Q ss_pred CCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeec--CCCCCeeEEEEccCcccccccccc
Q 048801 392 SNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS--GHENDVNYVQFSGCAVASRSAMSD 469 (1715)
Q Consensus 392 ~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~--gH~~~V~sLafspdg~as~~~~~~ 469 (1715)
.+...+.+++++++|+++++...++.|++|+.... .+..+. ++...+..+++++++
T Consensus 161 ---~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~----------~~~~~~~~g~~~~p~~i~~d~~G--------- 218 (286)
T 1q7f_A 161 ---KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ----------YLRQIGGEGITNYPIGVGINSNG--------- 218 (286)
T ss_dssp ---TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC----------EEEEESCTTTSCSEEEEEECTTC---------
T ss_pred ---CccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC----------EEEEEccCCccCCCcEEEECCCC---------
Confidence 11234789999999998888888999999997532 223332 233578899999876
Q ss_pred cccccccccccCCcccCceEEEEcCCC-eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCe
Q 048801 470 AFKEENVPKFKNSWFCHDNIVTCSRDG-SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGV 548 (1715)
Q Consensus 470 ~~~~~~~~~~~~s~~~~~~LaSgS~DG-sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~V 548 (1715)
.++++...++ .|.+|+... +....+ . .......+
T Consensus 219 -----------------~l~v~~~~~~~~i~~~~~~g-~~~~~~-------~--------------------~~~~~~~~ 253 (286)
T 1q7f_A 219 -----------------EILIADNHNNFNLTIFTQDG-QLISAL-------E--------------------SKVKHAQC 253 (286)
T ss_dssp -----------------CEEEEECSSSCEEEEECTTS-CEEEEE-------E--------------------ESSCCSCE
T ss_pred -----------------CEEEEeCCCCEEEEEECCCC-CEEEEE-------c--------------------ccCCCCcc
Confidence 6777777776 999998643 211100 0 00112246
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEECCCC
Q 048801 549 NMIVWSLDNRFVLAAIMDCRICVWNAVDG 577 (1715)
Q Consensus 549 tslafSPDG~~LaTgs~DGtI~IWDl~sg 577 (1715)
.+++++|+|+++++ +.+++|++|++...
T Consensus 254 ~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 254 FDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 78999999987776 67999999998654
No 181
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.52 E-value=4.5e-12 Score=150.92 Aligned_cols=251 Identities=12% Similarity=0.087 Sum_probs=178.2
Q ss_pred CCCeEEEEecCCCCcceEEEEecCC------------------------CcEEEEecCCCCCcceecCCCCCCCccCccC
Q 048801 327 TGAVTAIAFSPRPSAIYQLLSSSDD------------------------GTCRIWDARYSQYSPRIYLPKPPDAITGKSN 382 (1715)
Q Consensus 327 ~~~VtsLafSPdg~~~~~LaSgS~D------------------------GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~ 382 (1715)
-+.+.+|+++|++. ++++...+ +.|.+||..+++.+..+..
T Consensus 23 l~~v~~va~d~~G~---l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~------------ 87 (329)
T 3fvz_A 23 PGQVSGVALDSKNN---LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK------------ 87 (329)
T ss_dssp CSCEEEEEECTTCC---EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT------------
T ss_pred cCCceEEEECCCCC---EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC------------
Confidence 35789999999987 66776666 4688888877765432210
Q ss_pred CCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee---------cCCCCCeeE
Q 048801 383 VPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL---------SGHENDVNY 453 (1715)
Q Consensus 383 ~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l---------~gH~~~V~s 453 (1715)
.+-.....++++++|+++++...++.|++|+..... ..+..+ .++......
T Consensus 88 ------------~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~--------~~~~~~~~~~~~g~~~~~~~~P~~ 147 (329)
T 3fvz_A 88 ------------NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE--------GPLLILGRSMQPGSDQNHFCQPTD 147 (329)
T ss_dssp ------------TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSS--------CCSEEESBTTBCCCSTTCCSSEEE
T ss_pred ------------CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCe--------EEEEEecccCCCCCCccccCCCcE
Confidence 112347899999999999999889999999985431 012222 244557889
Q ss_pred EEEcc-CcccccccccccccccccccccCCcccCceEEEEc-CCCeEEEEecCCCccCcccccccccccccCCCCCCCCC
Q 048801 454 VQFSG-CAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQ 531 (1715)
Q Consensus 454 Lafsp-dg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~ 531 (1715)
|+++| ++ .++++.+ .++.|++|+.. +.....++....
T Consensus 148 ia~~~~~g--------------------------~lyv~d~~~~~~I~~~~~~-g~~~~~~~~~g~-------------- 186 (329)
T 3fvz_A 148 VAVEPSTG--------------------------AVFVSDGYCNSRIVQFSPS-GKFVTQWGEESS-------------- 186 (329)
T ss_dssp EEECTTTC--------------------------CEEEEECSSCCEEEEECTT-SCEEEEECEECC--------------
T ss_pred EEEeCCCC--------------------------eEEEEeCCCCCeEEEEcCC-CCEEEEeccCCC--------------
Confidence 99998 54 6777776 69999999954 332211110000
Q ss_pred CCCCCCcccccCCCCCeeEEEeCCC-CCEEEEEecCCeEEEEECCCCceEEEEe--cCCCCeEEEEEccCCCcEEEEEe-
Q 048801 532 PPRGGPRQRLLPTPRGVNMIVWSLD-NRFVLAAIMDCRICVWNAVDGSLVHSLT--GHSASSYVLDVHPFNPRIAMSAG- 607 (1715)
Q Consensus 532 ~~~g~~~~~l~~h~~~VtslafSPD-G~~LaTgs~DGtI~IWDl~sg~~l~tL~--gH~~~V~sLafSP~dg~lLaSgs- 607 (1715)
+ ......+-.....|+++|+ |.++++...++.|++|+..+|+.+..+. .+...+.+++|+| +.++++.+
T Consensus 187 ---~--~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~ 259 (329)
T 3fvz_A 187 ---G--SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP--GFLFAVNGK 259 (329)
T ss_dssp ---S--SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET--TEEEEEECC
T ss_pred ---C--CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC--CEEEEeCCC
Confidence 0 0000112234789999998 7777888889999999999899998884 4667889999998 44444433
Q ss_pred ------CCCcEEEEECCCCceEEEEE---cccceEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 608 ------YDGRTIVWDIWEGTPIRIYE---IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 608 ------~DGtI~VWDl~tgk~l~tl~---~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
.+.+|++|++.+|+.+..+. .+...+..++|+|||.++++...++.|++|++.
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 34589999999999999884 445568899999999888888889999999975
No 182
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.51 E-value=6.8e-12 Score=160.79 Aligned_cols=300 Identities=12% Similarity=0.023 Sum_probs=207.5
Q ss_pred CCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecC--CCCCcceecCCC
Q 048801 295 SNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR--YSQYSPRIYLPK 372 (1715)
Q Consensus 295 pDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~--tg~~l~~i~~~~ 372 (1715)
+.+.++++...++.|.++|..+++.+..+.. ...+..+.|+|+++ +|++++.|+.|.+||+. +++.+..+..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr---~lyv~~~dg~V~viD~~~~t~~~v~~i~~-- 238 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGR---YLFVIGRDGKVNMIDLWMKEPTTVAEIKI-- 238 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSC---EEEEEETTSEEEEEETTSSSCCEEEEEEC--
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCC---EEEEEcCCCeEEEEECCCCCCcEeEEEec--
Confidence 4455677778899999999999999988874 34577999999998 77888899999999995 5554444322
Q ss_pred CCCCccCccCCCCCCCCCCCCCCCCcceeEEEEc----cCCCeEEEecC-CCeEEEEeCCCCCccCCCCCceeeeeec--
Q 048801 373 PPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYN----ANGTVFVTGSS-DTFARVWSACKSSVEDSEQPIHELDVLS-- 445 (1715)
Q Consensus 373 ~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafS----pdG~~LatGs~-DG~IrVWDl~t~~~~~~~~~~~~l~~l~-- 445 (1715)
......++|+ |+|++++++.. ++.|.|+|..+.+. ...+....
T Consensus 239 ------------------------G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~------~~~i~~~~~~ 288 (567)
T 1qks_A 239 ------------------------GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP------KKIQSTRGMT 288 (567)
T ss_dssp ------------------------CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE------EEEEECCEEC
T ss_pred ------------------------CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE------EEEEeccccc
Confidence 2235789999 69998877765 58999999877542 11111110
Q ss_pred -----CC-CCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccc
Q 048801 446 -----GH-ENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAY 519 (1715)
Q Consensus 446 -----gH-~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~ 519 (1715)
.| ...+..+.+++++ ...++....+|.|.++|..+.....
T Consensus 289 ~~~~~~~p~~rva~i~~s~~~-------------------------~~~vv~~~~~g~v~~vd~~~~~~~~--------- 334 (567)
T 1qks_A 289 YDEQEYHPEPRVAAILASHYR-------------------------PEFIVNVKETGKILLVDYTDLNNLK--------- 334 (567)
T ss_dssp TTTCCEESCCCEEEEEECSSS-------------------------SEEEEEETTTTEEEEEETTCSSEEE---------
T ss_pred cccccccCCCceEEEEEcCCC-------------------------CEEEEEecCCCeEEEEecCCCccce---------
Confidence 01 1256677777654 3567777888999999987532000
Q ss_pred cccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCceEEEEec-----CCCCeEEE
Q 048801 520 HLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGSLVHSLTG-----HSASSYVL 593 (1715)
Q Consensus 520 ~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~~l~tL~g-----H~~~V~sL 593 (1715)
............+.|+|+|++|+++. .++.|.++|+.+++++..+.. |.+.-..+
T Consensus 335 -------------------v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~ 395 (567)
T 1qks_A 335 -------------------TTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF 395 (567)
T ss_dssp -------------------EEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE
T ss_pred -------------------eeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee
Confidence 00011223466789999999987766 578999999999998877754 43322222
Q ss_pred EEccCCCcEEEEEe-CCCcEEEEECCC-------CceEEEEEcccceEEEEEEcCCCCEEEEEeC-------CCeEEEEE
Q 048801 594 DVHPFNPRIAMSAG-YDGRTIVWDIWE-------GTPIRIYEIGRFKLVDGKFSPDGTSIVLSDD-------VGQIYLLN 658 (1715)
Q Consensus 594 afSP~dg~lLaSgs-~DGtI~VWDl~t-------gk~l~tl~~h~~~V~svafSPDG~~LAsgs~-------DG~I~IWd 658 (1715)
++|+++.+++++. .++.|.|+|..+ .+.++++......-..+.++|++++|.+... .+.|.|||
T Consensus 396 -~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 396 -VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred -ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 5785566666654 568999999988 6788888865444345778999999998763 46999999
Q ss_pred CCCC-----c----ccc-----------ccccceeecCCCccEEEc
Q 048801 659 TGQG-----E----SQK-----------DAKYDQFFLGDYRPLIRD 684 (1715)
Q Consensus 659 l~tG-----e----~~k-----------~~~~~~~fs~D~r~L~~d 684 (1715)
+.+. . .+. ..+....|.+||+.|.+.
T Consensus 475 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s 520 (567)
T 1qks_A 475 IKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFS 520 (567)
T ss_dssp GGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEE
T ss_pred CCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEE
Confidence 9866 1 111 112344688888877654
No 183
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.49 E-value=1e-10 Score=134.80 Aligned_cols=283 Identities=8% Similarity=0.012 Sum_probs=196.5
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEE-ecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC
Q 048801 239 LRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLAS-CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG 317 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~t-L~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg 317 (1715)
+..+...+.+++++++|+++++...++.|.+||.. +..... +..+...+.+++++++|.++++...++.|..|+.. +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 45566789999999999988877668899999988 654432 23356789999999999988887778899999976 4
Q ss_pred CceEEEe--CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCC
Q 048801 318 LPISVLR--GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL 395 (1715)
Q Consensus 318 ~~l~~L~--gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~ 395 (1715)
. +..+. .....+.++++.+++. ++++...++.|.+||. ++... .+..+ .
T Consensus 88 ~-~~~~~~~~~~~~~~~i~~~~~g~---l~v~~~~~~~i~~~d~-~g~~~-~~~~~-----------------------~ 138 (299)
T 2z2n_A 88 I-IKEYTLPNPDSAPYGITEGPNGD---IWFTEMNGNRIGRITD-DGKIR-EYELP-----------------------N 138 (299)
T ss_dssp C-EEEEECSSTTCCEEEEEECTTSC---EEEEETTTTEEEEECT-TCCEE-EEECS-----------------------S
T ss_pred c-EEEEeCCCcCCCceeeEECCCCC---EEEEecCCceEEEECC-CCCEE-EecCC-----------------------C
Confidence 3 33332 3456789999999886 6666667889999998 54432 11110 0
Q ss_pred CCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccc
Q 048801 396 QSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 396 h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
....+.++++.++|.++++...++.|.+|+. +++. .. ..+..+...+..+++.+++
T Consensus 139 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-------~~-~~~~~~~~~~~~i~~~~~g--------------- 194 (299)
T 2z2n_A 139 KGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDI-------TE-FKIPTPASGPVGITKGNDD--------------- 194 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE-------EE-EECSSTTCCEEEEEECTTS---------------
T ss_pred CCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE-------EE-eeCCCCCCcceeEEECCCC---------------
Confidence 1234789999999988888777889999998 5432 11 1123344567888888875
Q ss_pred cccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC
Q 048801 476 VPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL 555 (1715)
Q Consensus 476 ~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP 555 (1715)
..+++...++.|.+|+. ++.... +. .......+.++++++
T Consensus 195 -----------~l~v~~~~~~~i~~~~~-~g~~~~--------~~--------------------~~~~~~~~~~i~~~~ 234 (299)
T 2z2n_A 195 -----------ALWFVEIIGNKIGRITT-SGEITE--------FK--------------------IPTPNARPHAITAGA 234 (299)
T ss_dssp -----------SEEEEETTTTEEEEECT-TCCEEE--------EE--------------------CSSTTCCEEEEEECS
T ss_pred -----------CEEEEccCCceEEEECC-CCcEEE--------EE--------------------CCCCCCCceeEEECC
Confidence 56666667889999988 433110 00 011234688999999
Q ss_pred CCCEEEEEecCCeEEEEECCCCceEEE-EecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC
Q 048801 556 DNRFVLAAIMDCRICVWNAVDGSLVHS-LTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG 620 (1715)
Q Consensus 556 DG~~LaTgs~DGtI~IWDl~sg~~l~t-L~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg 620 (1715)
+|+++++...++.|.+|+. +++.... +..+...+.++++ + ++.++++.. .+.|..++..++
T Consensus 235 ~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~-~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 235 GIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-D-GETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp TTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-C-SSCEEEEET-TTEEEEEEEC--
T ss_pred CCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-c-CCCEEEEec-CCcEEEEEcCcc
Confidence 9997776667889999998 5543322 2345567899999 6 677766554 567777777654
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.49 E-value=6.2e-12 Score=165.57 Aligned_cols=294 Identities=9% Similarity=0.013 Sum_probs=189.8
Q ss_pred CCCCEEEEEeCC-----CcEEEEeCCCCcEEEEe------cCCCCCeEEEEECCCCCEEEEEeCCC-----eeEEEECCC
Q 048801 253 RSGRFVITGSDD-----RLVKIWSMETAFCLASC------RGHEGDITDLAVSSNNTLVASASNDF-----VIRVWRLPD 316 (1715)
Q Consensus 253 pDG~~LaTGS~D-----GtIrIWDl~tgk~l~tL------~gHs~~VtsLafSpDg~lLASGS~DG-----tIrVWDl~t 316 (1715)
|+|++++....+ +.|.+.+..++.....+ .+|...+..++|||||++||.++.++ .|+|||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 788887765432 23455555455433222 23445688999999999999876543 899999999
Q ss_pred CCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCc----------------EEEEecCCCCCcceecCCCCCCCccCc
Q 048801 317 GLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGT----------------CRIWDARYSQYSPRIYLPKPPDAITGK 380 (1715)
Q Consensus 317 g~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGt----------------VrIWDl~tg~~l~~i~~~~~~~~i~g~ 380 (1715)
++.+.....+ ..+.+++|+||++ .|+.++.++. |++|++.+++....+....
T Consensus 161 g~~~~~~~~~-~~~~~~~wspDg~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~-------- 228 (710)
T 2xdw_A 161 AKELPDVLER-VKFSCMAWTHDGK---GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF-------- 228 (710)
T ss_dssp TEEEEEEEEE-ECSCCEEECTTSS---EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC--------
T ss_pred CCCCcccccC-cccceEEEEeCCC---EEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEecc--------
Confidence 9876643322 2367899999998 6777776655 9999998765322211100
Q ss_pred cCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-----CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEE
Q 048801 381 SNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-----DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQ 455 (1715)
Q Consensus 381 ~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-----DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLa 455 (1715)
..+...+..++|+|||++|+.++. +..|++||+.+... ..........+..+...+.. .
T Consensus 229 -------------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~--~~~~~~~~~~l~~~~~~~~~-~ 292 (710)
T 2xdw_A 229 -------------PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESN--GITGILKWVKLIDNFEGEYD-Y 292 (710)
T ss_dssp -------------TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSS--SSCSSCCCEEEECSSSSCEE-E
T ss_pred -------------CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccc--ccCCccceEEeeCCCCcEEE-E
Confidence 112334678999999999887764 56899999875100 00000123444555555544 4
Q ss_pred EccCcccccccccccccccccccccCCcccCceEEEEcC----CCeEEEEecCCCccCcccccccccccccCCCCCCCCC
Q 048801 456 FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR----DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQ 531 (1715)
Q Consensus 456 fspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~----DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~ 531 (1715)
|++++ +.|+..+. .+.|.+|++.++.. ..|
T Consensus 293 ~s~dg--------------------------~~l~~~s~~~~~~~~l~~~d~~~~~~----~~~---------------- 326 (710)
T 2xdw_A 293 VTNEG--------------------------TVFTFKTNRHSPNYRLINIDFTDPEE----SKW---------------- 326 (710)
T ss_dssp EEEET--------------------------TEEEEEECTTCTTCEEEEEETTSCCG----GGC----------------
T ss_pred EeccC--------------------------CEEEEEECCCCCCCEEEEEeCCCCCc----ccc----------------
Confidence 66665 34443333 33688998875320 001
Q ss_pred CCCCCCcccccCCCC--CeeEEEeCCCCCEEEEEecCCe--EEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEe
Q 048801 532 PPRGGPRQRLLPTPR--GVNMIVWSLDNRFVLAAIMDCR--ICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG 607 (1715)
Q Consensus 532 ~~~g~~~~~l~~h~~--~VtslafSPDG~~LaTgs~DGt--I~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs 607 (1715)
..+..+.. .+..++|++++.++++...++. |++|++.+|+.+..+..+.+.|..+.++|++..++++.+
T Consensus 327 -------~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~s 399 (710)
T 2xdw_A 327 -------KVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFT 399 (710)
T ss_dssp -------EEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEE
T ss_pred -------eeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEe
Confidence 12222322 5778899988888888888884 667788788888888888888899999995556665544
Q ss_pred ---CCCcEEEEECCCCce-EEEEE
Q 048801 608 ---YDGRTIVWDIWEGTP-IRIYE 627 (1715)
Q Consensus 608 ---~DGtI~VWDl~tgk~-l~tl~ 627 (1715)
..++|++||+.+++. +..+.
T Consensus 400 s~~~P~~i~~~d~~tg~~~~~~l~ 423 (710)
T 2xdw_A 400 SFLSPGIIYHCDLTKEELEPRVFR 423 (710)
T ss_dssp CSSCCCEEEEEETTSSSCCCEEEE
T ss_pred CCCCCCEEEEEECCCCccceEEee
Confidence 357899999988873 33343
No 185
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.48 E-value=2.5e-12 Score=152.50 Aligned_cols=258 Identities=11% Similarity=0.078 Sum_probs=169.9
Q ss_pred CCeEEEEECCCCCEEEEEe---------CCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCC---C-
Q 048801 286 GDITDLAVSSNNTLVASAS---------NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD---G- 352 (1715)
Q Consensus 286 ~~VtsLafSpDg~lLASGS---------~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D---G- 352 (1715)
..+..+++ ||++||... .++.|.+|++.++... .+ ..+.+++|+|++. .|+.++.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~---~la~~~~~~~~~~ 84 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGK---KIAFMRANEEKKV 84 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSS---EEEEEEEETTTTE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCC---EEEEEEeccCCCc
Confidence 45677778 888887652 2568999999888753 34 5688999999998 56655433 3
Q ss_pred -cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC-------------
Q 048801 353 -TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD------------- 418 (1715)
Q Consensus 353 -tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D------------- 418 (1715)
.|.+|++.+++...... ... +.+++|+|+|+.|+.++.+
T Consensus 85 ~~l~~~~~~~g~~~~l~~--------------------------~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~ 137 (347)
T 2gop_A 85 SEIWVADLETLSSKKILE--------------------------AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV 137 (347)
T ss_dssp EEEEEEETTTTEEEEEEE--------------------------ESE-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred ceEEEEECCCCceEEEEc--------------------------CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence 37778887665322211 122 7899999999988887632
Q ss_pred --------------CeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcc
Q 048801 419 --------------TFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWF 484 (1715)
Q Consensus 419 --------------G~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~ 484 (1715)
..|.+|++.+++ .+..+.. . .+..+.|+|++
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~d~~~~~---------~~~~l~~-~-~~~~~~~spdg------------------------ 182 (347)
T 2gop_A 138 PAWFDDLGFFDGEKTTFWIFDTESEE---------VIEEFEK-P-RFSSGIWHRDK------------------------ 182 (347)
T ss_dssp CCC---------CEEEEEEEETTTTE---------EEEEEEE-E-TTCEEEEETTE------------------------
T ss_pred ceeecCcccccCccceEEEEECCCCe---------EEeeecC-C-CcccccCCCCe------------------------
Confidence 578889987642 1122222 2 67888999874
Q ss_pred cCceEEEEcCC------C-eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC
Q 048801 485 CHDNIVTCSRD------G-SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN 557 (1715)
Q Consensus 485 ~~~~LaSgS~D------G-sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG 557 (1715)
.++++..+ . ...||.+.++. ...+..+ ..+.. ++|||
T Consensus 183 ---~~~~~~~~~~~~~~~~~~~l~~~d~~~------------------------------~~~l~~~-~~~~~--~spdg 226 (347)
T 2gop_A 183 ---IVVNVPHREIIPQYFKFWDIYIWEDGK------------------------------EEKMFEK-VSFYA--VDSDG 226 (347)
T ss_dssp ---EEEEEECCCSSCCSSCCEEEEEEETTE------------------------------EEEEEEE-ESEEE--EEECS
T ss_pred ---EEEEEecccccccccccccEEEeCCCc------------------------------eEEeccC-cceee--ECCCC
Confidence 44444333 1 33444333221 0111112 23333 39999
Q ss_pred CEEEEEecC--------CeEEEEECCCCceEEEEecCCCCeEE-EEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEc
Q 048801 558 RFVLAAIMD--------CRICVWNAVDGSLVHSLTGHSASSYV-LDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEI 628 (1715)
Q Consensus 558 ~~LaTgs~D--------GtI~IWDl~sg~~l~tL~gH~~~V~s-LafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~ 628 (1715)
++|+.++.+ ..|++|| +++....+.+|...+.. +.|+ + + ++++++.++.++|| +.+++....+ .
T Consensus 227 ~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-d-g-~~~~~~~~~~~~l~-~~~g~~~~~~-~ 299 (347)
T 2gop_A 227 ERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-G-K-VYFTLFEEGSVNLY-IWDGEIKPIA-K 299 (347)
T ss_dssp SCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-T-E-EEEEEEETTEEEEE-EESSSEEEEE-C
T ss_pred CEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-C-c-EEEEEecCCcEEEE-EcCCceEEEe-c
Confidence 999887754 3688888 66655545566777886 8998 4 4 88899999999999 8877664444 4
Q ss_pred ccceEEEEEEcCCCCEEEEEeCCCeE-EEEECC
Q 048801 629 GRFKLVDGKFSPDGTSIVLSDDVGQI-YLLNTG 660 (1715)
Q Consensus 629 h~~~V~svafSPDG~~LAsgs~DG~I-~IWdl~ 660 (1715)
+...|.+++|+| .++++++.++.. .||.+.
T Consensus 300 ~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 300 GRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp SSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred CCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 577899999999 677777766654 666654
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.47 E-value=9.1e-12 Score=163.98 Aligned_cols=248 Identities=12% Similarity=0.034 Sum_probs=172.9
Q ss_pred CCCCeEEEEecCCCCcceEEEEecCC-C----cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcce
Q 048801 326 HTGAVTAIAFSPRPSAIYQLLSSSDD-G----TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI 400 (1715)
Q Consensus 326 H~~~VtsLafSPdg~~~~~LaSgS~D-G----tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~V 400 (1715)
|...+..++|||+++ +|+.+..+ | .|++||+.+++...... ....+
T Consensus 123 ~~~~~~~~~~SPDg~---~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~--------------------------~~~~~ 173 (710)
T 2xdw_A 123 GTVALRGYAFSEDGE---YFAYGLSASGSDWVTIKFMKVDGAKELPDVL--------------------------ERVKF 173 (710)
T ss_dssp SCEEEEEEEECTTSS---EEEEEEEETTCSCEEEEEEETTTTEEEEEEE--------------------------EEECS
T ss_pred CCEEEEEEEECCCCC---EEEEEEcCCCCceEEEEEEECCCCCCCcccc--------------------------cCccc
Confidence 444688999999998 55544332 2 89999999887543210 01125
Q ss_pred eEEEEccCCCeEEEecCCCe----------------EEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccc
Q 048801 401 LCCAYNANGTVFVTGSSDTF----------------ARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASR 464 (1715)
Q Consensus 401 tslafSpdG~~LatGs~DG~----------------IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~ 464 (1715)
..++|+|||+.|+.++.++. |++|++.++... ...+.....|...+..+.|+|++
T Consensus 174 ~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~-----~~~v~~~~~~~~~~~~~~~SpDg---- 244 (710)
T 2xdw_A 174 SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSE-----DILCAEFPDEPKWMGGAELSDDG---- 244 (710)
T ss_dssp CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGG-----CEEEECCTTCTTCEEEEEECTTS----
T ss_pred ceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCccc-----ceEEeccCCCCeEEEEEEEcCCC----
Confidence 67999999999998887765 999999765310 01222223355567899999987
Q ss_pred ccccccccccccccccCCcccCceEEEEcC-----CCeEEEEecCC------CccCcccccccccccccCCCCCCCCCCC
Q 048801 465 SAMSDAFKEENVPKFKNSWFCHDNIVTCSR-----DGSAIIWIPRS------RRSHGKVGRWTRAYHLKVPPPPLPPQPP 533 (1715)
Q Consensus 465 ~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~-----DGsIrIWDl~t------~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 533 (1715)
+.|+.++. +..|.+||+.+ +..
T Consensus 245 ----------------------~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~------------------------- 277 (710)
T 2xdw_A 245 ----------------------RYVLLSIREGCDPVNRLWYCDLQQESNGITGIL------------------------- 277 (710)
T ss_dssp ----------------------CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-------------------------
T ss_pred ----------------------CEEEEEEEccCCCccEEEEEECcccccccCCcc-------------------------
Confidence 56665543 56899998874 210
Q ss_pred CCCCcccccCCCCCeeEEEeCCCCCEEEEEecC----CeEEEEECCCCc--eEEEEecCCC--CeEEEEEccCCCcEEEE
Q 048801 534 RGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD----CRICVWNAVDGS--LVHSLTGHSA--SSYVLDVHPFNPRIAMS 605 (1715)
Q Consensus 534 ~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D----GtI~IWDl~sg~--~l~tL~gH~~--~V~sLafSP~dg~lLaS 605 (1715)
....+..+...+.. .|+++|..|+..+.. +.|.+|++.++. ....+..|.. .+..++|++ ++.++++
T Consensus 278 ---~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~ 352 (710)
T 2xdw_A 278 ---KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR-SNFLVLC 352 (710)
T ss_dssp ---CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET-TTEEEEE
T ss_pred ---ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc-CCEEEEE
Confidence 11222333334443 588999988877653 369999998875 2455666654 678899986 7788999
Q ss_pred EeCCCc--EEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEe----CCCeEEEEECCCCc
Q 048801 606 AGYDGR--TIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSD----DVGQIYLLNTGQGE 663 (1715)
Q Consensus 606 gs~DGt--I~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs----~DG~I~IWdl~tGe 663 (1715)
...|+. |.+|++.+|+.+..+..+.+.+..++++|++..|+.+. ..+.|++||+.+|+
T Consensus 353 ~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 353 YLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 988884 56678778888888887777888999999998777542 34799999998887
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.47 E-value=1.5e-11 Score=143.27 Aligned_cols=268 Identities=9% Similarity=-0.008 Sum_probs=178.0
Q ss_pred CcEEEEecCCCCCeEEEEECCCCC-EEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCc
Q 048801 275 AFCLASCRGHEGDITDLAVSSNNT-LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGT 353 (1715)
Q Consensus 275 gk~l~tL~gHs~~VtsLafSpDg~-lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGt 353 (1715)
+..+..+..+.....+++|+|+|+ +++++..++.|.+|+..++ ...+..+...+.+++|++++. ++++...++.
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~---l~v~~~~~~~ 91 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGH---LIACSHGLRR 91 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCC---EEEEETTTTE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCc---EEEEecCCCe
Confidence 344455666677788999999998 7888888999999999877 677777888899999999987 6677777789
Q ss_pred EEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccC
Q 048801 354 CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVED 433 (1715)
Q Consensus 354 VrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~ 433 (1715)
|.+||..+++......... ......+..++++|+|+++++.+..|....+....
T Consensus 92 i~~~d~~~g~~~~~~~~~~---------------------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~----- 145 (296)
T 3e5z_A 92 LERQREPGGEWESIADSFE---------------------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYG----- 145 (296)
T ss_dssp EEEECSTTCCEEEEECEET---------------------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSC-----
T ss_pred EEEEcCCCCcEEEEeeccC---------------------CCCCCCCCCEEECCCCCEEEECCcccccccccccc-----
Confidence 9999997776432211000 00122367899999999888743222110000000
Q ss_pred CCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccc
Q 048801 434 SEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVG 513 (1715)
Q Consensus 434 ~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~ 513 (1715)
.... ...+.|..++.. +.
T Consensus 146 ------------~~~~-------------------------------------------~~~~~l~~~~~~-g~------ 163 (296)
T 3e5z_A 146 ------------GEME-------------------------------------------LPGRWVFRLAPD-GT------ 163 (296)
T ss_dssp ------------CCCC-------------------------------------------SSSCEEEEECTT-SC------
T ss_pred ------------cccc-------------------------------------------CCCcEEEEECCC-CC------
Confidence 0000 000111111111 00
Q ss_pred cccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECC-CCce---EEEEecCCCC
Q 048801 514 RWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV-DGSL---VHSLTGHSAS 589 (1715)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~-sg~~---l~tL~gH~~~ 589 (1715)
...+..+......++|+|+|+.|++.+.++.|++|++. ++.+ ...+..+...
T Consensus 164 ------------------------~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 219 (296)
T 3e5z_A 164 ------------------------LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGK 219 (296)
T ss_dssp ------------------------EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSC
T ss_pred ------------------------EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCC
Confidence 00011122345789999999999777778999999986 5655 3344445556
Q ss_pred eEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEE-cCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 590 SYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKF-SPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 590 V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svaf-SPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
+.++++++ +++++++. ++.|.+|+.. |+.+..+..+.. +.+++| +|+++.|++++.+ .|+.++..+.+..
T Consensus 220 p~~i~~d~-~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 220 TDGLRVDA-GGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp CCSEEEBT-TSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred CCeEEECC-CCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 77899999 56666655 7899999985 888888887666 889999 6899999988875 5677777766543
No 188
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.46 E-value=1.5e-10 Score=133.32 Aligned_cols=283 Identities=10% Similarity=0.044 Sum_probs=195.1
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE-eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEec
Q 048801 281 CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL-RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359 (1715)
Q Consensus 281 L~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L-~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl 359 (1715)
+..+...+.+++++++|+++++...++.|.+||.. +...... ..+...+.++++.+++. ++++...++.|..||.
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~---l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGE---VWFTENAANKIGRITK 85 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSC---EEEEETTTTEEEEECT
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCC---EEEeCCCCCeEEEECC
Confidence 34456789999999999988877668899999987 5533322 23457799999999886 6666666888999987
Q ss_pred CCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCce
Q 048801 360 RYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIH 439 (1715)
Q Consensus 360 ~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~ 439 (1715)
. +.. ..+..+ .....+.++++.++|.++++...++.|.+|+. ++.. .
T Consensus 86 ~-g~~-~~~~~~-----------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-------~ 132 (299)
T 2z2n_A 86 K-GII-KEYTLP-----------------------NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI-------R 132 (299)
T ss_dssp T-SCE-EEEECS-----------------------STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE-------E
T ss_pred C-CcE-EEEeCC-----------------------CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE-------E
Confidence 5 321 222111 01235789999999998888777889999998 4321 1
Q ss_pred eeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccc
Q 048801 440 ELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAY 519 (1715)
Q Consensus 440 ~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~ 519 (1715)
...+..+...+..+++.+++ ..+++...++.|.+||. +++... +
T Consensus 133 -~~~~~~~~~~~~~i~~~~~g--------------------------~l~v~~~~~~~i~~~~~-~g~~~~--------~ 176 (299)
T 2z2n_A 133 -EYELPNKGSYPSFITLGSDN--------------------------ALWFTENQNNAIGRITE-SGDITE--------F 176 (299)
T ss_dssp -EEECSSTTCCEEEEEECTTS--------------------------CEEEEETTTTEEEEECT-TCCEEE--------E
T ss_pred -EecCCCCCCCCceEEEcCCC--------------------------CEEEEeCCCCEEEEEcC-CCcEEE--------e
Confidence 11222344568888888875 56666667789999987 432110 0
Q ss_pred cccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEE-EecCCCCeEEEEEccC
Q 048801 520 HLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHS-LTGHSASSYVLDVHPF 598 (1715)
Q Consensus 520 ~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~t-L~gH~~~V~sLafSP~ 598 (1715)
. .......+..++++++|.++++...++.|.+|+. +++.... +..+...+.++++++
T Consensus 177 ~--------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~- 234 (299)
T 2z2n_A 177 K--------------------IPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGA- 234 (299)
T ss_dssp E--------------------CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-
T ss_pred e--------------------CCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECC-
Confidence 0 0112335788999999998777767889999999 7765432 233556789999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCceEEEEE--cccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 048801 599 NPRIAMSAGYDGRTIVWDIWEGTPIRIYE--IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQG 662 (1715)
Q Consensus 599 dg~lLaSgs~DGtI~VWDl~tgk~l~tl~--~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tG 662 (1715)
+++++++...++.|.+||. +++ +..+. .+...+.++++ ++|.+.++.. .+.|..++..++
T Consensus 235 ~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 235 GIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp TTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred CCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 5677766667889999998 554 33443 23456889999 8888777655 577888887655
No 189
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.44 E-value=1.7e-11 Score=146.24 Aligned_cols=282 Identities=10% Similarity=-0.029 Sum_probs=191.7
Q ss_pred CCCcEEEEeCCCCcEEEEec------CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEec
Q 048801 263 DDRLVKIWSMETAFCLASCR------GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFS 336 (1715)
Q Consensus 263 ~DGtIrIWDl~tgk~l~tL~------gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafS 336 (1715)
.++.|.+||.++++....+. .......++++. +++++++...++.|.+||..+++.+..+. .......++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 38899999999998766542 122346778874 45566666668999999999999988886 45678999999
Q ss_pred CCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec
Q 048801 337 PRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS 416 (1715)
Q Consensus 337 Pdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs 416 (1715)
+++. .+++...++.|.+||..+++....+...... ........+++ .++.++++..
T Consensus 93 ~~g~---lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~--------------------~~~~~p~~i~~-~~~~lyv~~~ 148 (328)
T 3dsm_A 93 SDEK---AYVTQIWDYRIFIINPKTYEITGYIECPDMD--------------------MESGSTEQMVQ-YGKYVYVNCW 148 (328)
T ss_dssp ETTE---EEEEEBSCSEEEEEETTTTEEEEEEECTTCC--------------------TTTCBCCCEEE-ETTEEEEEEC
T ss_pred CCCe---EEEEECCCCeEEEEECCCCeEEEEEEcCCcc--------------------ccCCCcceEEE-ECCEEEEEcC
Confidence 8873 4555547899999999988766555432100 00112345666 4555555544
Q ss_pred -CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC
Q 048801 417 -SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD 495 (1715)
Q Consensus 417 -~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D 495 (1715)
.++.|.+||+.+++. +..+.. ......+++++++ .+++++..+
T Consensus 149 ~~~~~v~viD~~t~~~---------~~~i~~-g~~p~~i~~~~dG--------------------------~l~v~~~~~ 192 (328)
T 3dsm_A 149 SYQNRILKIDTETDKV---------VDELTI-GIQPTSLVMDKYN--------------------------KMWTITDGG 192 (328)
T ss_dssp TTCCEEEEEETTTTEE---------EEEEEC-SSCBCCCEECTTS--------------------------EEEEEBCCB
T ss_pred CCCCEEEEEECCCCeE---------EEEEEc-CCCccceEEcCCC--------------------------CEEEEECCC
Confidence 488999999987542 222222 1234567777765 455555444
Q ss_pred ----------CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEec
Q 048801 496 ----------GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM 565 (1715)
Q Consensus 496 ----------GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~ 565 (1715)
+.|.++|..+++....+ . .........++|+|++++|+++..
T Consensus 193 ~~~~~~~~~~~~v~~id~~t~~v~~~~-------~---------------------~~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 193 YEGSPYGYEAPSLYRIDAETFTVEKQF-------K---------------------FKLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp CTTCSSCBCCCEEEEEETTTTEEEEEE-------E---------------------CCTTCCCEEEEECTTSCEEEEESS
T ss_pred ccCCccccCCceEEEEECCCCeEEEEE-------e---------------------cCCCCCceeEEEecCCCEEEEEcc
Confidence 78999998865422111 0 001125788999999999988754
Q ss_pred CCeEEEEECCCCceEEE--EecCCCCeEEEEEccCCCcEEEEE----eCCCcEEEEECCCCceEEEEEcccceEEEEEE
Q 048801 566 DCRICVWNAVDGSLVHS--LTGHSASSYVLDVHPFNPRIAMSA----GYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKF 638 (1715)
Q Consensus 566 DGtI~IWDl~sg~~l~t--L~gH~~~V~sLafSP~dg~lLaSg----s~DGtI~VWDl~tgk~l~tl~~h~~~V~svaf 638 (1715)
.|.+||+.+++.... +..+.....+++++|++++++++. ..++.|.+||.. |+.+..+..+..+ ..++|
T Consensus 245 --~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P-~~~~~ 319 (328)
T 3dsm_A 245 --DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIP-GAFCW 319 (328)
T ss_dssp --SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESE-EEEEE
T ss_pred --EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCc-ceEEE
Confidence 899999988876421 222245688999999788888887 678999999997 9999988754432 34444
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.43 E-value=3.3e-12 Score=167.83 Aligned_cols=280 Identities=10% Similarity=-0.021 Sum_probs=180.8
Q ss_pred cCCCCEEEEEeCCC---c--EEEEeCCCCcEEEEec------CCCCCeEEEEECCCCCEEEE-----EeCCCeeEEEECC
Q 048801 252 DRSGRFVITGSDDR---L--VKIWSMETAFCLASCR------GHEGDITDLAVSSNNTLVAS-----ASNDFVIRVWRLP 315 (1715)
Q Consensus 252 SpDG~~LaTGS~DG---t--IrIWDl~tgk~l~tL~------gHs~~VtsLafSpDg~lLAS-----GS~DGtIrVWDl~ 315 (1715)
+|+|.+++....++ . |.+.+...+.....+. +|...+.+++|||||++||. |+.+.+|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 37888887766543 3 4444544554433332 45567999999999999984 4445789999999
Q ss_pred CCCceEEEeCCCCCe--EEEEecCCCCcceEEEEecCCCc-------------EEEEecCCCCCcceecCCCCCCCccCc
Q 048801 316 DGLPISVLRGHTGAV--TAIAFSPRPSAIYQLLSSSDDGT-------------CRIWDARYSQYSPRIYLPKPPDAITGK 380 (1715)
Q Consensus 316 tg~~l~~L~gH~~~V--tsLafSPdg~~~~~LaSgS~DGt-------------VrIWDl~tg~~l~~i~~~~~~~~i~g~ 380 (1715)
+++.+. ..+...+ ..++|+|+++ .|+.++.|.. |++|++.++.....+....
T Consensus 156 tg~~~~--~~~~~~~~~~~~~wspDg~---~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~-------- 222 (695)
T 2bkl_A 156 SGEWSK--VDVIEGGKYATPKWTPDSK---GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER-------- 222 (695)
T ss_dssp TCCBCS--SCCBSCCTTCCCEECTTSS---EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC--------
T ss_pred CCCCcC--CcccCcccccceEEecCCC---EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec--------
Confidence 998651 1122222 6899999998 7788777766 9999998776322211100
Q ss_pred cCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC----eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEE
Q 048801 381 SNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT----FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQF 456 (1715)
Q Consensus 381 ~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG----~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLaf 456 (1715)
..+...+.+++|+|||++|+.++.++ .|.+|+..++. ...+..+...+....+
T Consensus 223 -------------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~----------~~~l~~~~~~~~~~~~ 279 (695)
T 2bkl_A 223 -------------TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD----------FRLLVKGVGAKYEVHA 279 (695)
T ss_dssp -------------CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS----------CEEEEECSSCCEEEEE
T ss_pred -------------CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc----------eEEeecCCCceEEEEe
Confidence 11234578999999999988877665 56666543321 2334445555555555
Q ss_pred ccCcccccccccccccccccccccCCcccCceEEEEc---CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCC
Q 048801 457 SGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS---RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPP 533 (1715)
Q Consensus 457 spdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS---~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 533 (1715)
+++ .+++++. .++.|.+|++.++.. ..|
T Consensus 280 -~~g--------------------------~l~~~s~~~~~~~~l~~~d~~~~~~----~~~------------------ 310 (695)
T 2bkl_A 280 -WKD--------------------------RFYVLTDEGAPRQRVFEVDPAKPAR----ASW------------------ 310 (695)
T ss_dssp -ETT--------------------------EEEEEECTTCTTCEEEEEBTTBCSG----GGC------------------
T ss_pred -cCC--------------------------cEEEEECCCCCCCEEEEEeCCCCCc----cCC------------------
Confidence 444 3444443 358899999875321 001
Q ss_pred CCCCcccccCC--CCCeeEEEeCCCCCEEEEEecCCeEEEEECC-CCceEEEEecC-CCCeEEEEEccCCCcEEEEEeC-
Q 048801 534 RGGPRQRLLPT--PRGVNMIVWSLDNRFVLAAIMDCRICVWNAV-DGSLVHSLTGH-SASSYVLDVHPFNPRIAMSAGY- 608 (1715)
Q Consensus 534 ~g~~~~~l~~h--~~~VtslafSPDG~~LaTgs~DGtI~IWDl~-sg~~l~tL~gH-~~~V~sLafSP~dg~lLaSgs~- 608 (1715)
..+..+ ...+..++|+ ++.++++...|+..+||.+. +++.+..+..+ .+.|..++++|++..++++.+.
T Consensus 311 -----~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~ 384 (695)
T 2bkl_A 311 -----KEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSF 384 (695)
T ss_dssp -----EEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEET
T ss_pred -----eEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCC
Confidence 111112 3357778888 77888889999988887654 46666777655 6677888899955555555443
Q ss_pred --CCcEEEEECCCCce
Q 048801 609 --DGRTIVWDIWEGTP 622 (1715)
Q Consensus 609 --DGtI~VWDl~tgk~ 622 (1715)
.++|++||+.+++.
T Consensus 385 ~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 385 TTPRQIYKTSVSTGKS 400 (695)
T ss_dssp TEEEEEEEEETTTCCE
T ss_pred CCCCEEEEEECCCCcE
Confidence 47899999988874
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.42 E-value=7.1e-12 Score=164.67 Aligned_cols=277 Identities=12% Similarity=0.034 Sum_probs=180.1
Q ss_pred CCCCEEEEEeCCC---eeEEE--ECCCCCceEEEe------CCCCCeEEEEecCCCCcceEEE-----EecCCCcEEEEe
Q 048801 295 SNNTLVASASNDF---VIRVW--RLPDGLPISVLR------GHTGAVTAIAFSPRPSAIYQLL-----SSSDDGTCRIWD 358 (1715)
Q Consensus 295 pDg~lLASGS~DG---tIrVW--Dl~tg~~l~~L~------gH~~~VtsLafSPdg~~~~~La-----SgS~DGtVrIWD 358 (1715)
|+|.+++....++ .-.|| +...+.....+. +|...+.+++|||+++ +|+ .|+.+..|++||
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~---~la~~~~~~G~~~~~i~v~d 153 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGK---KVAFAQKPNAADEAVLHVID 153 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSS---EEEEEEEETTCSCCEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCC---EEEEEECCCCCceEEEEEEE
Confidence 6777776665443 23344 444444433332 3555789999999998 555 444567899999
Q ss_pred cCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCe-------------EEEEe
Q 048801 359 ARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTF-------------ARVWS 425 (1715)
Q Consensus 359 l~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~-------------IrVWD 425 (1715)
+.+++.+.... + .......++|+|||+.|+.++.+.. |++|+
T Consensus 154 l~tg~~~~~~~-------~------------------~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~ 208 (695)
T 2bkl_A 154 VDSGEWSKVDV-------I------------------EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHT 208 (695)
T ss_dssp TTTCCBCSSCC-------B------------------SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEE
T ss_pred CCCCCCcCCcc-------c------------------CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEE
Confidence 99887431000 0 0111257899999999999888765 99999
Q ss_pred CCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC----eEEEE
Q 048801 426 ACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG----SAIIW 501 (1715)
Q Consensus 426 l~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG----sIrIW 501 (1715)
+.++... ...+.....|...+..+.|+|++ +.|+.++.++ .|.+|
T Consensus 209 l~t~~~~-----~~lv~~~~~~~~~~~~~~~SpDG--------------------------~~l~~~~~~~~~~~~l~~~ 257 (695)
T 2bkl_A 209 LGTEPSK-----DTVVHERTGDPTTFLQSDLSRDG--------------------------KYLFVYILRGWSENDVYWK 257 (695)
T ss_dssp TTSCGGG-----CEEEECCCCCTTCEEEEEECTTS--------------------------CCEEEEEEETTTEEEEEEE
T ss_pred CCCCchh-----ceEEEecCCCCEEEEEEEECCCC--------------------------CEEEEEEeCCCCceEEEEE
Confidence 9875310 12333344455678899999987 5666655544 45555
Q ss_pred ecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEec----CCeEEEEECCCC
Q 048801 502 IPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM----DCRICVWNAVDG 577 (1715)
Q Consensus 502 Dl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~----DGtI~IWDl~sg 577 (1715)
+..++ ....+..+...+....+ ++|. |+..+. ++.|.+|++.++
T Consensus 258 ~~~~~------------------------------~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~ 305 (695)
T 2bkl_A 258 RPGEK------------------------------DFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKP 305 (695)
T ss_dssp CTTCS------------------------------SCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBC
T ss_pred cCCCC------------------------------ceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCC
Confidence 43321 11223333444555666 6677 544443 578999999887
Q ss_pred ce--EEEEecC--CCCeEEEEEccCCCcEEEEEeCCCcEEEEECC-CCceEEEEEcc-cceEEEEEEcCCCCEEEEEe--
Q 048801 578 SL--VHSLTGH--SASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW-EGTPIRIYEIG-RFKLVDGKFSPDGTSIVLSD-- 649 (1715)
Q Consensus 578 ~~--l~tL~gH--~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~-tgk~l~tl~~h-~~~V~svafSPDG~~LAsgs-- 649 (1715)
.. ...+..| ...+..++|+ ++.++++...|+..+||.+. +|..+..+..+ .+.+..++++||+..|+...
T Consensus 306 ~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss 383 (695)
T 2bkl_A 306 ARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTS 383 (695)
T ss_dssp SGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEE
T ss_pred CccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcC
Confidence 63 2344433 4457788886 57889999999998888664 46666666544 56677889999998887443
Q ss_pred --CCCeEEEEECCCCcc
Q 048801 650 --DVGQIYLLNTGQGES 664 (1715)
Q Consensus 650 --~DG~I~IWdl~tGe~ 664 (1715)
..+.|++||+.+|+.
T Consensus 384 ~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 384 FTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp TTEEEEEEEEETTTCCE
T ss_pred CCCCCEEEEEECCCCcE
Confidence 347899999988864
No 192
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.42 E-value=4.1e-11 Score=139.58 Aligned_cols=248 Identities=9% Similarity=0.075 Sum_probs=170.4
Q ss_pred eeEEEEcCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEE
Q 048801 234 QNIKKLRGHRDAVYCAIFDRSGR-FVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVW 312 (1715)
Q Consensus 234 k~l~~L~GH~~~Vt~VafSpDG~-~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVW 312 (1715)
..+..+..+.....+++|+|+|+ +++++..++.|.+|+..++ ...+..+...+.+++++++|+++++...++.|.+|
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQ 95 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEE
Confidence 34556667778889999999998 7788888999999999987 66777788889999999999988887778899999
Q ss_pred ECCCCCceEEEeCC----CCCeEEEEecCCCCcceEEEE----ec-------------CCCcEEEEecCCCCCcceecCC
Q 048801 313 RLPDGLPISVLRGH----TGAVTAIAFSPRPSAIYQLLS----SS-------------DDGTCRIWDARYSQYSPRIYLP 371 (1715)
Q Consensus 313 Dl~tg~~l~~L~gH----~~~VtsLafSPdg~~~~~LaS----gS-------------~DGtVrIWDl~tg~~l~~i~~~ 371 (1715)
|..+++........ ...+..++++|++. ++++ ++ ..+.|..++.. +.. ..+.
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~---l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~-- 168 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLAPDGS---LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPI-- 168 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEECTTSC---EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEE--
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEECCCCC---EEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEee--
Confidence 99888755443321 23467899999987 5665 32 12345555543 321 1110
Q ss_pred CCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCC-CCCccCCCCCceeeeeecCCCCC
Q 048801 372 KPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSAC-KSSVEDSEQPIHELDVLSGHEND 450 (1715)
Q Consensus 372 ~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~-t~~~~~~~~~~~~l~~l~gH~~~ 450 (1715)
.+......++|+|+|+.|++.+.++.|.+|++. ++.+. .....+..+...
T Consensus 169 -----------------------~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~------~~~~~~~~~~~~ 219 (296)
T 3e5z_A 169 -----------------------RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETE------YQGVHFTVEPGK 219 (296)
T ss_dssp -----------------------CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEE------EEEEEECCSSSC
T ss_pred -----------------------cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCc------CCCeEeeCCCCC
Confidence 012235789999999988888888999999986 22110 111222334556
Q ss_pred eeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCC
Q 048801 451 VNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPP 530 (1715)
Q Consensus 451 V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~ 530 (1715)
+..+++++++ .++++. ++.|.+|+... +
T Consensus 220 p~~i~~d~~G--------------------------~l~v~~--~~~v~~~~~~g-~----------------------- 247 (296)
T 3e5z_A 220 TDGLRVDAGG--------------------------LIWASA--GDGVHVLTPDG-D----------------------- 247 (296)
T ss_dssp CCSEEEBTTS--------------------------CEEEEE--TTEEEEECTTS-C-----------------------
T ss_pred CCeEEECCCC--------------------------CEEEEc--CCeEEEECCCC-C-----------------------
Confidence 6778888876 444544 88999998762 2
Q ss_pred CCCCCCCcccccCCCCCeeEEEe-CCCCCEEEEEecCCeEEEEECCCCce
Q 048801 531 QPPRGGPRQRLLPTPRGVNMIVW-SLDNRFVLAAIMDCRICVWNAVDGSL 579 (1715)
Q Consensus 531 ~~~~g~~~~~l~~h~~~Vtslaf-SPDG~~LaTgs~DGtI~IWDl~sg~~ 579 (1715)
....+..+.. +++++| +++++.|++++.+ .|..++..+.++
T Consensus 248 ------~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 248 ------ELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp ------EEEEEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred ------EEEEEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 1112222334 888999 6899999988876 455567666544
No 193
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.37 E-value=5.1e-10 Score=136.31 Aligned_cols=292 Identities=10% Similarity=-0.014 Sum_probs=187.0
Q ss_pred EcCCCCEEEEEeC--CC---cEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEe----------CCCeeEEEECC
Q 048801 251 FDRSGRFVITGSD--DR---LVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASAS----------NDFVIRVWRLP 315 (1715)
Q Consensus 251 fSpDG~~LaTGS~--DG---tIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS----------~DGtIrVWDl~ 315 (1715)
..|+++++++... .. .|.+||..+++.+.++.....+ .++|+|||++|+++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 4577777776653 22 8899999999999888765554 999999999999886 36789999999
Q ss_pred CCCceEEEeCC-------CCCeEEEEecCCCCcceEEEEecC--CCcEEEEecCCCCCcce-ecCCCCCCCccCccCCCC
Q 048801 316 DGLPISVLRGH-------TGAVTAIAFSPRPSAIYQLLSSSD--DGTCRIWDARYSQYSPR-IYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 316 tg~~l~~L~gH-------~~~VtsLafSPdg~~~~~LaSgS~--DGtVrIWDl~tg~~l~~-i~~~~~~~~i~g~~~~~~ 385 (1715)
+++.+..+... ......++|+|+++ +|+++.. ++.|.++| .+++.+.. +..+
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~---~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-------------- 167 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNA---DLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-------------- 167 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECCCCC---EEEEEecCCCCeEEEEE-CCCCEEeEEcCCC--------------
Confidence 98888776532 12346899999998 5666553 57899999 88876544 3221
Q ss_pred CCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCe-eEEEEccCcccc
Q 048801 386 NNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDV-NYVQFSGCAVAS 463 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V-~sLafspdg~as 463 (1715)
.|+.+.|++ ..+++.+.||.+.+++. +++...... ....+.+ ..++ ....+.+++
T Consensus 168 ---------------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~---~~~~~~~-~~p~~~~~~~~~~~--- 224 (373)
T 2mad_H 168 ---------------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGL---VGAMLTA-AQNLLTQPAQANKS--- 224 (373)
T ss_pred ---------------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEe---ccccccC-CcceeecceeEecC---
Confidence 124455554 45666777899999998 654310000 0000011 1111 112233332
Q ss_pred cccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccC
Q 048801 464 RSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLP 543 (1715)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~ 543 (1715)
..++..+..+.+.+.|+.+..... ...| .+. .........
T Consensus 225 -----------------------~~~~~~~~~~~v~vid~~~~~~~v-~~~~----~~~------------~~~~~~~~~ 264 (373)
T 2mad_H 225 -----------------------GRIVWPVYSGKILQADISAAGATN-KAPI----DAL------------SGGRKADTW 264 (373)
T ss_pred -----------------------CEEEEEcCCceEEEEeccCCcceE-eeee----eec------------CCcccccce
Confidence 233333467888888886532100 0000 000 000000111
Q ss_pred CCCCeeEEEeCCCCCEEEEEec----------CCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEe-CCCcE
Q 048801 544 TPRGVNMIVWSLDNRFVLAAIM----------DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG-YDGRT 612 (1715)
Q Consensus 544 h~~~VtslafSPDG~~LaTgs~----------DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs-~DGtI 612 (1715)
.+.+...++++++++.|+++.. .+.|.++|+.+++.+..+... ....+++|+|++..+++++. .++.|
T Consensus 265 ~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V 343 (373)
T 2mad_H 265 RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVL 343 (373)
T ss_pred ecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeE
Confidence 2334556889999998887654 357999999999999988633 35789999995553666766 58999
Q ss_pred EEEECCCCceEEEE
Q 048801 613 IVWDIWEGTPIRIY 626 (1715)
Q Consensus 613 ~VWDl~tgk~l~tl 626 (1715)
.|||+.+++.+..+
T Consensus 344 ~ViD~~t~~vv~~i 357 (373)
T 2mad_H 344 HIYDAGAGDQDQST 357 (373)
T ss_pred EEEECCCCCEEeee
Confidence 99999999999884
No 194
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.37 E-value=9.2e-11 Score=142.49 Aligned_cols=308 Identities=11% Similarity=0.006 Sum_probs=198.5
Q ss_pred EEcCCCCEEEEEeC-----CCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEe----------CCCeeEEEEC
Q 048801 250 IFDRSGRFVITGSD-----DRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASAS----------NDFVIRVWRL 314 (1715)
Q Consensus 250 afSpDG~~LaTGS~-----DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS----------~DGtIrVWDl 314 (1715)
...|+++.++.... ++.|.+.|..+++.+.++.....+ . ++++|||++|++++ .++.|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 35689998888865 679999999999999998865555 4 99999999887775 3678999999
Q ss_pred CCCCceEEEeCCC-------CCeEEEEecCCCCcceEEEEec--CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCC
Q 048801 315 PDGLPISVLRGHT-------GAVTAIAFSPRPSAIYQLLSSS--DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 315 ~tg~~l~~L~gH~-------~~VtsLafSPdg~~~~~LaSgS--~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
.+++.+..+.-.. .....++|+|+++ +|+++. .++.|.++|+.+++.+.++..+.
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk---~lyVan~~~~~~VsVID~~t~~vv~tI~v~g------------- 180 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK---TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD------------- 180 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS---EEEEEECSSSCEEEEEETTTTEEEEEEECCS-------------
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCC---EEEEEEcCCCCeEEEEECCCCcEEEEEECCC-------------
Confidence 9999988875321 2456799999998 555554 37899999999998877764321
Q ss_pred CCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCC-CCccCCCCCceeeeeecCCCCCee-EEEEc-cCccc
Q 048801 386 NNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACK-SSVEDSEQPIHELDVLSGHENDVN-YVQFS-GCAVA 462 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t-~~~~~~~~~~~~l~~l~gH~~~V~-sLafs-pdg~a 462 (1715)
. ...+....+.+++.+.||.+.+.++.+ +++.. .....+..-..++. ...|. ++
T Consensus 181 --------------~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~-----~~~~~~~~~~~~~~~~~~~~~~d--- 237 (386)
T 3sjl_D 181 --------------C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI-----THTEVFHPEDEFLINHPAYSQKA--- 237 (386)
T ss_dssp --------------E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEE-----EECCCCSCTTSCBCSCCEEETTT---
T ss_pred --------------c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEE-----eecceeccccccccccceeEcCC---
Confidence 0 112222345666777788888887754 22100 00000000001110 11222 22
Q ss_pred ccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccccc
Q 048801 463 SRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLL 542 (1715)
Q Consensus 463 s~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~ 542 (1715)
..++..+.+|.|.+.|+.+.... ....|.. +.. .....-
T Consensus 238 ------------------------G~~~~vs~~g~V~v~d~~~~~~~-v~~~~~~-~~~---------------~~~~~g 276 (386)
T 3sjl_D 238 ------------------------GRLVWPTYTGKIHQIDLSSGDAK-FLPAVEA-LTE---------------AERADG 276 (386)
T ss_dssp ------------------------TEEEEEBTTSEEEEEECTTSSCE-ECCCEES-SCH---------------HHHHTT
T ss_pred ------------------------CcEEEEeCCCEEEEEECCCCcce-eecceec-ccc---------------cccccc
Confidence 24444666899999998754310 0000000 000 000000
Q ss_pred CCCCCeeEEEeCCCCCEEEEEec----------CCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEE-EEEeCCCc
Q 048801 543 PTPRGVNMIVWSLDNRFVLAAIM----------DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIA-MSAGYDGR 611 (1715)
Q Consensus 543 ~h~~~VtslafSPDG~~LaTgs~----------DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lL-aSgs~DGt 611 (1715)
-...++..++++++++.|++... .+.|.+.|+.+++.+..+..- ..+++|++++++..+| ++...++.
T Consensus 277 ~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~ 355 (386)
T 3sjl_D 277 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKT 355 (386)
T ss_dssp EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTE
T ss_pred ccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCe
Confidence 01234445788999998888653 257999999999999988632 2578999999654344 44566999
Q ss_pred EEEEECCCCceEEEEEcccceEEEEEEcCC
Q 048801 612 TIVWDIWEGTPIRIYEIGRFKLVDGKFSPD 641 (1715)
Q Consensus 612 I~VWDl~tgk~l~tl~~h~~~V~svafSPD 641 (1715)
|.|+|..+++.++++... +.-..+.+++|
T Consensus 356 VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 356 LYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred EEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 999999999999999743 33445566665
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.36 E-value=9.6e-11 Score=133.71 Aligned_cols=240 Identities=10% Similarity=-0.016 Sum_probs=164.7
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE
Q 048801 245 AVYCAIFDRSGRFVI-TGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL 323 (1715)
Q Consensus 245 ~Vt~VafSpDG~~La-TGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L 323 (1715)
...+++++++|++++ +.+.++.|.+|+..++........+...+.+|+++++|+++++.. ++.|.+||...... ..+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eee
Confidence 578899999999777 446789999999876544332233445788999999999666665 88999999865543 333
Q ss_pred e-CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeE
Q 048801 324 R-GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILC 402 (1715)
Q Consensus 324 ~-gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vts 402 (1715)
. .....+.++++.+++. ++++...++.|.+|+..+.... ... ......+.+
T Consensus 103 ~~~~~~~p~~i~~~~~g~---l~v~~~~~~~i~~~~~~~~~~~--~~~-----------------------~~~~~~p~~ 154 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGA---VYVADRGNNRVVKLAAGSKTQT--VLP-----------------------FTGLNDPDG 154 (270)
T ss_dssp CCCSCSSEEEEEECTTCC---EEEEEGGGTEEEEECTTCCSCE--ECC-----------------------CCSCCSCCC
T ss_pred ecCCcCCCcceEECCCCC---EEEEECCCCEEEEEECCCceeE--eec-----------------------cccCCCcee
Confidence 3 3336789999999886 6666677888999975433211 100 001224678
Q ss_pred EEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCC
Q 048801 403 CAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNS 482 (1715)
Q Consensus 403 lafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s 482 (1715)
++++++|+++++...++.|.+|+...... ......+...+.++++++++
T Consensus 155 i~~~~~g~l~v~~~~~~~i~~~~~~~~~~---------~~~~~~~~~~p~~i~~d~~g---------------------- 203 (270)
T 1rwi_B 155 VAVDNSGNVYVTDTDNNRVVKLEAESNNQ---------VVLPFTDITAPWGIAVDEAG---------------------- 203 (270)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTTTCCE---------EECCCSSCCSEEEEEECTTC----------------------
T ss_pred EEEeCCCCEEEEECCCCEEEEEecCCCce---------EeecccCCCCceEEEECCCC----------------------
Confidence 99999999888877788999999875421 11112233567889998875
Q ss_pred cccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEE
Q 048801 483 WFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLA 562 (1715)
Q Consensus 483 ~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaT 562 (1715)
..+++...++.|.+|+..+.... .....+...+.+++++++|+++++
T Consensus 204 ----~l~v~~~~~~~v~~~~~~~~~~~-----------------------------~~~~~~~~~p~~i~~~~~g~l~v~ 250 (270)
T 1rwi_B 204 ----TVYVTEHNTNQVVKLLAGSTTST-----------------------------VLPFTGLNTPLAVAVDSDRTVYVA 250 (270)
T ss_dssp ----CEEEEETTTSCEEEECTTCSCCE-----------------------------ECCCCSCSCEEEEEECTTCCEEEE
T ss_pred ----CEEEEECCCCcEEEEcCCCCcce-----------------------------eeccCCCCCceeEEECCCCCEEEE
Confidence 57777777899999987642210 000112246789999999998888
Q ss_pred EecCCeEEEEECCCCc
Q 048801 563 AIMDCRICVWNAVDGS 578 (1715)
Q Consensus 563 gs~DGtI~IWDl~sg~ 578 (1715)
...++.|+++++...+
T Consensus 251 ~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 251 DRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EGGGTEEEEECCCGGG
T ss_pred ECCCCEEEEEcCCCcc
Confidence 8889999999986554
No 196
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.33 E-value=2.4e-10 Score=130.43 Aligned_cols=241 Identities=11% Similarity=-0.003 Sum_probs=165.6
Q ss_pred CeEEEEecCCCCcceEEE-EecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc
Q 048801 329 AVTAIAFSPRPSAIYQLL-SSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA 407 (1715)
Q Consensus 329 ~VtsLafSPdg~~~~~La-SgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp 407 (1715)
...++++.+++. +++ +.+.++.|.+|+..+.... .+. ......+.++++++
T Consensus 25 ~p~~i~~~~~g~---l~v~~~~~~~~i~~~~~~~~~~~-~~~------------------------~~~~~~p~~i~~~~ 76 (270)
T 1rwi_B 25 SPSGVAVDSAGN---VYVTSEGMYGRVVKLATGSTGTT-VLP------------------------FNGLYQPQGLAVDG 76 (270)
T ss_dssp CEEEEEECTTCC---EEEEECSSSCEEEEECC-----E-ECC------------------------CCSCCSCCCEEECT
T ss_pred CccceEECCCCC---EEEEccCCCCcEEEecCCCcccc-eEe------------------------eCCcCCcceeEECC
Confidence 678999999986 555 5577899999987544321 000 00123467899999
Q ss_pred CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeec-CCCCCeeEEEEccCcccccccccccccccccccccCCcccC
Q 048801 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS-GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCH 486 (1715)
Q Consensus 408 dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~-gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~ 486 (1715)
+|+++++.. ++.|.+|+...... ..+. .....+..+++.+++
T Consensus 77 ~g~l~v~~~-~~~i~~~d~~~~~~----------~~~~~~~~~~p~~i~~~~~g-------------------------- 119 (270)
T 1rwi_B 77 AGTVYVTDF-NNRVVTLAAGSNNQ----------TVLPFDGLNYPEGLAVDTQG-------------------------- 119 (270)
T ss_dssp TCCEEEEET-TTEEEEECTTCSCC----------EECCCCSCSSEEEEEECTTC--------------------------
T ss_pred CCCEEEEcC-CCEEEEEeCCCceE----------eeeecCCcCCCcceEECCCC--------------------------
Confidence 999777766 88999999865321 1111 223567889998875
Q ss_pred ceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC
Q 048801 487 DNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD 566 (1715)
Q Consensus 487 ~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D 566 (1715)
..+++...++.|.+|+..+.... .........+.+++++++|+++++...+
T Consensus 120 ~l~v~~~~~~~i~~~~~~~~~~~-----------------------------~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 170 (270)
T 1rwi_B 120 AVYVADRGNNRVVKLAAGSKTQT-----------------------------VLPFTGLNDPDGVAVDNSGNVYVTDTDN 170 (270)
T ss_dssp CEEEEEGGGTEEEEECTTCCSCE-----------------------------ECCCCSCCSCCCEEECTTCCEEEEEGGG
T ss_pred CEEEEECCCCEEEEEECCCceeE-----------------------------eeccccCCCceeEEEeCCCCEEEEECCC
Confidence 56777777889999965432100 0001112346789999999977777778
Q ss_pred CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEE
Q 048801 567 CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIV 646 (1715)
Q Consensus 567 GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LA 646 (1715)
+.|.+|+............+...+.+|++++ ++.++++...++.|.+|+............+...+.+++++++|++++
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v 249 (270)
T 1rwi_B 171 NRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYV 249 (270)
T ss_dssp TEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEE
T ss_pred CEEEEEecCCCceEeecccCCCCceEEEECC-CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEE
Confidence 8999999877665544344446789999999 558887777789999999866544332222335688999999999888
Q ss_pred EEeCCCeEEEEECCCCcc
Q 048801 647 LSDDVGQIYLLNTGQGES 664 (1715)
Q Consensus 647 sgs~DG~I~IWdl~tGe~ 664 (1715)
+...++.|.+|++...+.
T Consensus 250 ~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 250 ADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EEGGGTEEEEECCCGGGS
T ss_pred EECCCCEEEEEcCCCccc
Confidence 888899999999876543
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.33 E-value=1.1e-09 Score=133.47 Aligned_cols=289 Identities=10% Similarity=-0.012 Sum_probs=186.6
Q ss_pred EECCCCCEEEEEeC--CC---eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec----------CCCcEEE
Q 048801 292 AVSSNNTLVASASN--DF---VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS----------DDGTCRI 356 (1715)
Q Consensus 292 afSpDg~lLASGS~--DG---tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS----------~DGtVrI 356 (1715)
...|+++++++... .. +|.+||..+++.+..+.....+ .++|+|+++ +|+.+. .++.|.+
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~---~lyv~n~~~~~~~rg~~~~~v~v 101 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGS---EFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCC---EEEEEeccccccccCCCCCeEEE
Confidence 34567777776653 22 8899999999988888754444 999999998 455543 4678999
Q ss_pred EecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC--CCeEEEEeCCCCCccCC
Q 048801 357 WDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS--DTFARVWSACKSSVEDS 434 (1715)
Q Consensus 357 WDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~--DG~IrVWDl~t~~~~~~ 434 (1715)
||..+.+.+..+.++..... ........++|+|||++|+++.. ++.|.++| .+++.
T Consensus 102 iD~~t~~~~~~i~~~~~~~~------------------~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~--- 159 (373)
T 2mad_H 102 FDPVTFLPIADIELPDAPRF------------------DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS--- 159 (373)
T ss_pred EECCCCcEEEEEECCCcccc------------------ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE---
Confidence 99988776666544211000 00112357899999999998864 57899999 87643
Q ss_pred CCCceeeee-ecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccc
Q 048801 435 EQPIHELDV-LSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVG 513 (1715)
Q Consensus 435 ~~~~~~l~~-l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~ 513 (1715)
+.. +.. . .++.+.+.+ ...+++.+.||.+.+++. +++......
T Consensus 160 ------~~~~i~~-~---~~~~~~~~~-------------------------~~~~~~~~~dg~~~~vd~-~g~~~~~~~ 203 (373)
T 2mad_H 160 ------DDQLLSS-P---TCYHIHPGA-------------------------PSTFYLLCAQGGLAKTDH-AGGAAGAGL 203 (373)
T ss_pred ------EeEEcCC-C---ceEEEEeCC-------------------------CceEEEEcCCCCEEEEEC-CCcEEEEEe
Confidence 222 211 1 123444443 356777888999999998 654221100
Q ss_pred cccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCc--eEEEEec------
Q 048801 514 RWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS--LVHSLTG------ 585 (1715)
Q Consensus 514 ~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~--~l~tL~g------ 585 (1715)
.. .. ............+.+++..++..+..+.|.+.|+.++. .+..+.-
T Consensus 204 --~~-------------------~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~ 260 (373)
T 2mad_H 204 --VG-------------------AM--LTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRK 260 (373)
T ss_pred --cc-------------------cc--ccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccc
Confidence 00 00 00000111234566666655555578899999987653 2222221
Q ss_pred ----CCCCeEEEEEccCCCcEEEEEe---------CCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCC-EEEEEe-C
Q 048801 586 ----HSASSYVLDVHPFNPRIAMSAG---------YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGT-SIVLSD-D 650 (1715)
Q Consensus 586 ----H~~~V~sLafSP~dg~lLaSgs---------~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~-~LAsgs-~ 650 (1715)
.......++++|++++++++.. ..+.|.++|+.+++.+..+.... ....++|+|||+ +|+++. .
T Consensus 261 ~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~~ 339 (373)
T 2mad_H 261 ADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAISVAQDGGPDLYALSAG 339 (373)
T ss_pred ccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEEECCCCCeEEEEEcCC
Confidence 1223445788996666555443 24689999999999999997443 578999999999 677776 5
Q ss_pred CCeEEEEECCCCccccc
Q 048801 651 VGQIYLLNTGQGESQKD 667 (1715)
Q Consensus 651 DG~I~IWdl~tGe~~k~ 667 (1715)
++.|.|||+.+++.++.
T Consensus 340 ~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 340 TEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CCeEEEEECCCCCEEee
Confidence 89999999999986654
No 198
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.32 E-value=1.1e-12 Score=132.22 Aligned_cols=99 Identities=14% Similarity=0.229 Sum_probs=86.5
Q ss_pred HHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccC
Q 048801 1613 RDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFI 1692 (1715)
Q Consensus 1613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~ 1692 (1715)
+..|...|..+ ...+....|..+++....++|...+..|||++||++||++++|++++++..||++|++||.+||.
T Consensus 9 ~~~~~~il~~l----~~~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~ 84 (112)
T 3d7c_A 9 YTTLKNLLAQI----KSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNP 84 (112)
T ss_dssp HHHHHHHHHHH----HHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHH----HcCCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHCC
Confidence 33344444444 33467788888888888999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhhcC
Q 048801 1693 KNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1693 ~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
+++.|..+|+.|.++|.+.+.+|
T Consensus 85 ~~s~~~~~A~~L~~~f~~~~~~~ 107 (112)
T 3d7c_A 85 PDSEYCRCASALEKFFYFKLKEG 107 (112)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999998764
No 199
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.32 E-value=3.2e-09 Score=122.27 Aligned_cols=280 Identities=8% Similarity=-0.025 Sum_probs=191.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEE-EecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC
Q 048801 240 RGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLA-SCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL 318 (1715)
Q Consensus 240 ~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~-tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~ 318 (1715)
......+.+++++++|++.++...++.|.+|+.. ++... .+..+...+.+++++++|.++++...++.|.+||.. +.
T Consensus 16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence 3456788999999999988877778999999988 65543 233345689999999999988877778899999987 55
Q ss_pred ceEE-EeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCC
Q 048801 319 PISV-LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQS 397 (1715)
Q Consensus 319 ~l~~-L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~ 397 (1715)
.... +......+.++++.+++. ++++...++.|..||.. ++.. .+..+ ...
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~g~---l~v~~~~~~~i~~~~~~-g~~~-~~~~~-----------------------~~~ 145 (300)
T 2qc5_A 94 FTEYPLPQPDSGPYGITEGLNGD---IWFTQLNGDRIGKLTAD-GTIY-EYDLP-----------------------NKG 145 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTC---EEEEETTTTEEEEECTT-SCEE-EEECS-----------------------STT
T ss_pred eEEecCCCCCCCCccceECCCCC---EEEEccCCCeEEEECCC-CCEE-EccCC-----------------------CCC
Confidence 4322 222346789999999886 66666667889999876 4432 11111 012
Q ss_pred cceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccc
Q 048801 398 HQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVP 477 (1715)
Q Consensus 398 ~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~ 477 (1715)
..+.++++.++|+++++...++.|.+|+. ++.. .. ..+..+...+..+++.+++
T Consensus 146 ~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~-------~~-~~~~~~~~~~~~i~~d~~g----------------- 199 (300)
T 2qc5_A 146 SYPAFITLGSDNALWFTENQNNSIGRITN-TGKL-------EE-YPLPTNAAAPVGITSGNDG----------------- 199 (300)
T ss_dssp CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-------EE-EECSSTTCCEEEEEECTTS-----------------
T ss_pred CCceeEEECCCCCEEEEecCCCeEEEECC-CCcE-------EE-eeCCCCCCCcceEEECCCC-----------------
Confidence 34789999999997777776789999998 4321 11 1122344567888888765
Q ss_pred cccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC
Q 048801 478 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN 557 (1715)
Q Consensus 478 ~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG 557 (1715)
..+++....+.|.+|+.. +.... + ........+.+++++++|
T Consensus 200 ---------~l~v~~~~~~~i~~~~~~-g~~~~--------~--------------------~~~~~~~~~~~i~~d~~g 241 (300)
T 2qc5_A 200 ---------ALWFVEIMGNKIGRITTT-GEISE--------Y--------------------DIPTPNARPHAITAGKNS 241 (300)
T ss_dssp ---------SEEEEETTTTEEEEECTT-CCEEE--------E--------------------ECSSTTCCEEEEEECSTT
T ss_pred ---------CEEEEccCCCEEEEEcCC-CcEEE--------E--------------------ECCCCCCCceEEEECCCC
Confidence 566666667789999873 22100 0 001123457899999999
Q ss_pred CEEEEEecCCeEEEEECCCCceEEE-EecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 558 RFVLAAIMDCRICVWNAVDGSLVHS-LTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 558 ~~LaTgs~DGtI~IWDl~sg~~l~t-L~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
+++++...++.|.+|+. +++.... +......+.++++.+ ++.++++.. . .|..+|.
T Consensus 242 ~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 242 EIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGK-DGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECT-TSCEEEECS-S-EEEEEEE
T ss_pred CEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCC-CCCEEEEcc-C-ceEEeCC
Confidence 97776666789999998 5554322 333455678899988 566665544 4 6766664
No 200
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.30 E-value=2.7e-10 Score=132.80 Aligned_cols=247 Identities=12% Similarity=0.052 Sum_probs=175.5
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEecCCC-CCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCC-CCeE
Q 048801 254 SGRFVITGSDDRLVKIWSMETAFCLASCRGHE-GDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHT-GAVT 331 (1715)
Q Consensus 254 DG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs-~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~-~~Vt 331 (1715)
.+++|++++.|+.|.+||.++|+.+..+..+. ..+.+++++|+|++|+ +.++.|..||. +|+.+..+..+. ..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 46799999999999999999999999998776 5789999999999998 45778999998 899999988653 5788
Q ss_pred EEEecCCCCcceEEEEecC-CCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCC
Q 048801 332 AIAFSPRPSAIYQLLSSSD-DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT 410 (1715)
Q Consensus 332 sLafSPdg~~~~~LaSgS~-DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~ 410 (1715)
++.+.+++. +|++.+. ++.|..+|. +++.+..+...... ..+......+++.++|+
T Consensus 81 ~~~~~~dG~---~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~-------------------~~~~~~~~~v~~~~~G~ 137 (276)
T 3no2_A 81 TARILPDGN---ALVAWCGHPSTILEVNM-KGEVLSKTEFETGI-------------------ERPHAQFRQINKNKKGN 137 (276)
T ss_dssp EEEECTTSC---EEEEEESTTEEEEEECT-TSCEEEEEEECCSC-------------------SSGGGSCSCCEECTTSC
T ss_pred ccEECCCCC---EEEEecCCCCEEEEEeC-CCCEEEEEeccCCC-------------------CcccccccCceECCCCC
Confidence 999999998 6777766 778888886 66665555332110 00112344567899999
Q ss_pred eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEE
Q 048801 411 VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIV 490 (1715)
Q Consensus 411 ~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~La 490 (1715)
+|++...++.|.+||.. ++. +..+..+ ..+.++.+.+++ +.++
T Consensus 138 ~lv~~~~~~~v~~~d~~-G~~---------~w~~~~~-~~~~~~~~~~~g--------------------------~~~v 180 (276)
T 3no2_A 138 YLVPLFATSEVREIAPN-GQL---------LNSVKLS-GTPFSSAFLDNG--------------------------DCLV 180 (276)
T ss_dssp EEEEETTTTEEEEECTT-SCE---------EEEEECS-SCCCEEEECTTS--------------------------CEEE
T ss_pred EEEEecCCCEEEEECCC-CCE---------EEEEECC-CCccceeEcCCC--------------------------CEEE
Confidence 99999999999999987 542 3444333 344556666665 6788
Q ss_pred EEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC----
Q 048801 491 TCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD---- 566 (1715)
Q Consensus 491 SgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D---- 566 (1715)
+++.++.|..+|..+++.+..+.... + .+ .....+..++..++|.++++....
T Consensus 181 ~~~~~~~v~~~d~~tG~~~w~~~~~~----~------------~~-------~~l~~~~~~~~~~~G~i~v~~~~g~~~~ 237 (276)
T 3no2_A 181 ACGDAHCFVQLNLESNRIVRRVNAND----I------------EG-------VQLFFVAQLFPLQNGGLYICNWQGHDRE 237 (276)
T ss_dssp ECBTTSEEEEECTTTCCEEEEEEGGG----S------------BS-------CCCSEEEEEEECTTSCEEEEEECTTCTT
T ss_pred EeCCCCeEEEEeCcCCcEEEEecCCC----C------------CC-------ccccccccceEcCCCCEEEEeccCcccc
Confidence 88888899999998876543332100 0 00 011346788889999988877422
Q ss_pred ----CeEEEEEC-CCCceEEEEecC
Q 048801 567 ----CRICVWNA-VDGSLVHSLTGH 586 (1715)
Q Consensus 567 ----GtI~IWDl-~sg~~l~tL~gH 586 (1715)
+..+++.+ .+|+.+..+..+
T Consensus 238 ~~~~~~~~~~~~~~~g~~~W~~~~~ 262 (276)
T 3no2_A 238 AGKGKHPQLVEIDSEGKVVWQLNDK 262 (276)
T ss_dssp GGGSCCCSEEEECTTSBEEEEECCT
T ss_pred ccccCCceEEEECCCCCEEEEecCc
Confidence 13345555 467777776543
No 201
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.30 E-value=3.9e-09 Score=121.52 Aligned_cols=278 Identities=12% Similarity=0.050 Sum_probs=190.9
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEE-EeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCC
Q 048801 283 GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISV-LRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARY 361 (1715)
Q Consensus 283 gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~-L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~t 361 (1715)
.....+.+|+++++|+++++...++.|.+|+.. ++.... +..+...+.++++.+++. ++++...++.|..||..
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~---l~v~~~~~~~v~~~d~~- 91 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGD---IWFTENGANKIGKLSKK- 91 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC---EEEEETTTTEEEEECTT-
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCC---EEEEecCCCeEEEECCC-
Confidence 345688999999999988887778999999987 554332 223346789999999886 56666667889999987
Q ss_pred CCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceee
Q 048801 362 SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHEL 441 (1715)
Q Consensus 362 g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l 441 (1715)
++. ..+..+. ....+.++++.++|.++++...++.|..|+.. ++. . .
T Consensus 92 g~~-~~~~~~~-----------------------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-------~-~ 138 (300)
T 2qc5_A 92 GGF-TEYPLPQ-----------------------PDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI-------Y-E 138 (300)
T ss_dssp SCE-EEEECSS-----------------------TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE-------E-E
T ss_pred CCe-EEecCCC-----------------------CCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE-------E-E
Confidence 543 2221110 12347899999999988887778899999876 321 1 1
Q ss_pred eeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccc
Q 048801 442 DVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHL 521 (1715)
Q Consensus 442 ~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l 521 (1715)
..+......+..+++.+++ ..+++...++.|.+|+. ++.... +.
T Consensus 139 ~~~~~~~~~~~~i~~d~~g--------------------------~l~v~~~~~~~i~~~~~-~g~~~~--------~~- 182 (300)
T 2qc5_A 139 YDLPNKGSYPAFITLGSDN--------------------------ALWFTENQNNSIGRITN-TGKLEE--------YP- 182 (300)
T ss_dssp EECSSTTCCEEEEEECTTS--------------------------SEEEEETTTTEEEEECT-TCCEEE--------EE-
T ss_pred ccCCCCCCCceeEEECCCC--------------------------CEEEEecCCCeEEEECC-CCcEEE--------ee-
Confidence 1123344567888888875 56666666788999987 322110 00
Q ss_pred cCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEE-EecCCCCeEEEEEccCCC
Q 048801 522 KVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHS-LTGHSASSYVLDVHPFNP 600 (1715)
Q Consensus 522 ~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~t-L~gH~~~V~sLafSP~dg 600 (1715)
.......+..++++++|.++++....+.|.+|+. +++.... +..+...+.++++++ ++
T Consensus 183 -------------------~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~-~g 241 (300)
T 2qc5_A 183 -------------------LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGK-NS 241 (300)
T ss_dssp -------------------CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-TT
T ss_pred -------------------CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECC-CC
Confidence 0112245788999999987777767788999998 5655443 334556789999999 56
Q ss_pred cEEEEEeCCCcEEEEECCCCceEEEEE--cccceEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 048801 601 RIAMSAGYDGRTIVWDIWEGTPIRIYE--IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNT 659 (1715)
Q Consensus 601 ~lLaSgs~DGtI~VWDl~tgk~l~tl~--~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl 659 (1715)
+++++...++.|.+|+. +++.. .+. .....+.+++++++|.+.++.. . .|..++.
T Consensus 242 ~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 242 EIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 77776666789999998 55443 332 2345678899999998666554 4 7777765
No 202
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.29 E-value=5.8e-10 Score=132.90 Aligned_cols=253 Identities=8% Similarity=-0.050 Sum_probs=171.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe
Q 048801 245 AVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR 324 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~ 324 (1715)
....+++. ++++.++...++.|.+||..+++.+.++. .......++++++++++++...++.|.+||+.+++....+.
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 45667774 34455556668999999999999999886 34678999999998555555489999999999998877776
Q ss_pred CCC-----CCeEEEEecCCCCcceEEEEec-CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCc
Q 048801 325 GHT-----GAVTAIAFSPRPSAIYQLLSSS-DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSH 398 (1715)
Q Consensus 325 gH~-----~~VtsLafSPdg~~~~~LaSgS-~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~ 398 (1715)
... .....|++ ..+. ++++.. .++.|.+||+.+++.+..+... .
T Consensus 123 ~g~~~~~~~~p~~i~~-~~~~---lyv~~~~~~~~v~viD~~t~~~~~~i~~g--------------------------~ 172 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQ-YGKY---VYVNCWSYQNRILKIDTETDKVVDELTIG--------------------------I 172 (328)
T ss_dssp CTTCCTTTCBCCCEEE-ETTE---EEEEECTTCCEEEEEETTTTEEEEEEECS--------------------------S
T ss_pred cCCccccCCCcceEEE-ECCE---EEEEcCCCCCEEEEEECCCCeEEEEEEcC--------------------------C
Confidence 433 14567777 3332 334433 4889999999988766554321 1
Q ss_pred ceeEEEEccCCCeEEEecCC----------CeEEEEeCCCCCccCCCCCceeeeeecCC-CCCeeEEEEccCcccccccc
Q 048801 399 QILCCAYNANGTVFVTGSSD----------TFARVWSACKSSVEDSEQPIHELDVLSGH-ENDVNYVQFSGCAVASRSAM 467 (1715)
Q Consensus 399 ~VtslafSpdG~~LatGs~D----------G~IrVWDl~t~~~~~~~~~~~~l~~l~gH-~~~V~sLafspdg~as~~~~ 467 (1715)
....++++++|++++++..+ +.|.+||..++++ ...+... ......++|+|++
T Consensus 173 ~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v---------~~~~~~~~g~~p~~la~~~d~------- 236 (328)
T 3dsm_A 173 QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV---------EKQFKFKLGDWPSEVQLNGTR------- 236 (328)
T ss_dssp CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE---------EEEEECCTTCCCEEEEECTTS-------
T ss_pred CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE---------EEEEecCCCCCceeEEEecCC-------
Confidence 23568899999987777654 7899999977532 2222211 2367899999976
Q ss_pred cccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCC
Q 048801 468 SDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRG 547 (1715)
Q Consensus 468 ~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~ 547 (1715)
+.|.++.. .|.+||+.+++.... ..+......
T Consensus 237 -------------------~~lyv~~~--~v~~~d~~t~~~~~~---------------------------~~~~~~~~~ 268 (328)
T 3dsm_A 237 -------------------DTLYWINN--DIWRMPVEADRVPVR---------------------------PFLEFRDTK 268 (328)
T ss_dssp -------------------CEEEEESS--SEEEEETTCSSCCSS---------------------------CSBCCCSSC
T ss_pred -------------------CEEEEEcc--EEEEEECCCCceeee---------------------------eeecCCCCc
Confidence 45655544 899999886542100 000011345
Q ss_pred eeEEEeCC-CCCEEEEE----ecCCeEEEEECCCCceEEEEecCCCCeEEEEE
Q 048801 548 VNMIVWSL-DNRFVLAA----IMDCRICVWNAVDGSLVHSLTGHSASSYVLDV 595 (1715)
Q Consensus 548 VtslafSP-DG~~LaTg----s~DGtI~IWDl~sg~~l~tL~gH~~~V~sLaf 595 (1715)
...++++| ++.++++. ..++.|.+||.. |+.+.++..-.. -..++|
T Consensus 269 p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~-P~~~~~ 319 (328)
T 3dsm_A 269 YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGII-PGAFCW 319 (328)
T ss_dssp EEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEES-EEEEEE
T ss_pred eEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccC-cceEEE
Confidence 78899999 55555555 568899999997 998888863222 245555
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.28 E-value=1e-09 Score=133.41 Aligned_cols=290 Identities=15% Similarity=0.123 Sum_probs=191.7
Q ss_pred EEECCCCCEEEEEeC-----CCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec----------CCCcEE
Q 048801 291 LAVSSNNTLVASASN-----DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS----------DDGTCR 355 (1715)
Q Consensus 291 LafSpDg~lLASGS~-----DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS----------~DGtVr 355 (1715)
....|++..|++... ++.|.+.|..+++.+..+.....+ . ++++|+++. |+++. .++.|.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~---lyVan~~~~r~~~G~~~~~Vs 112 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSF---IAHASTVFSRIARGERTDYVE 112 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSC---EEEEEEEEEETTEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCE---EEEEcccccccccCCCCCEEE
Confidence 455789998888866 679999999999999988755555 4 999999984 44333 467899
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC--CCeEEEEeCCCCCccC
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS--DTFARVWSACKSSVED 433 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~--DG~IrVWDl~t~~~~~ 433 (1715)
+||..+++.+..+.++..... ........++|+|||++|.++.. ++.|.++|+.+.+.
T Consensus 113 viD~~t~~v~~~I~v~~g~r~------------------~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v-- 172 (386)
T 3sjl_D 113 VFDPVTLLPTADIELPDAPRF------------------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF-- 172 (386)
T ss_dssp EECTTTCCEEEEEEETTCCCC------------------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE--
T ss_pred EEECCCCeEEEEEECCCcccc------------------ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE--
Confidence 999999987777654321000 00123457899999998887753 68999999987543
Q ss_pred CCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCC-CccCccc
Q 048801 434 SEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS-RRSHGKV 512 (1715)
Q Consensus 434 ~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t-~~~~~~~ 512 (1715)
+..+.... |..+.|.+ ...+++.+.||.+.+.++.+ ++...
T Consensus 173 -------v~tI~v~g----~~~~~P~g-------------------------~~~~~~~~~DG~~~~v~~~~~g~v~~-- 214 (386)
T 3sjl_D 173 -------KRMLDVPD----CYHIFPTA-------------------------PDTFFMHCRDGSLAKVAFGTEGTPEI-- 214 (386)
T ss_dssp -------EEEEECCS----EEEEEEEE-------------------------TTEEEEEETTSCEEEEECCSSSCCEE--
T ss_pred -------EEEEECCC----cceeecCC-------------------------CceeEEECCCCCEEEEECCCCCeEEE--
Confidence 33332111 12222333 35777888899999999875 33210
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcccccCCCCCe-eEEEe-CCCCCEEEEEecCCeEEEEECCCCc--eEEEEe----
Q 048801 513 GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGV-NMIVW-SLDNRFVLAAIMDCRICVWNAVDGS--LVHSLT---- 584 (1715)
Q Consensus 513 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~V-tslaf-SPDG~~LaTgs~DGtI~IWDl~sg~--~l~tL~---- 584 (1715)
.. ...+ ......+ ...+| .++|++++ .+.+|.|++.|+.++. .+..+.
T Consensus 215 ~~-~~~~----------------------~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~ 270 (386)
T 3sjl_D 215 TH-TEVF----------------------HPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTE 270 (386)
T ss_dssp EE-CCCC----------------------SCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCH
T ss_pred ee-ccee----------------------ccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccc
Confidence 00 0000 0000111 11255 46786655 5568999999997654 232222
Q ss_pred -----c-CCCCeEEEEEccCCCcEEEEEeC---------CCcEEEEECCCCceEEEEEcccceEEEEEEcCCCC-EEEEE
Q 048801 585 -----G-HSASSYVLDVHPFNPRIAMSAGY---------DGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGT-SIVLS 648 (1715)
Q Consensus 585 -----g-H~~~V~sLafSP~dg~lLaSgs~---------DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~-~LAsg 648 (1715)
+ ..+....+++++++++++++... .+.|.+.|+.+++.+..+.... .+..++|++||+ +|+++
T Consensus 271 ~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~~~~lavs~D~~~~ly~t 349 (386)
T 3sjl_D 271 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSINVSQDEKPLLYAL 349 (386)
T ss_dssp HHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECSSSSCEEEEE
T ss_pred ccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC-CcceEEECCCCCeEEEEE
Confidence 0 12233457778866666655431 2579999999999999998543 678999999997 66665
Q ss_pred -eCCCeEEEEECCCCcccccc
Q 048801 649 -DDVGQIYLLNTGQGESQKDA 668 (1715)
Q Consensus 649 -s~DG~I~IWdl~tGe~~k~~ 668 (1715)
..++.|.++|..+++.++..
T Consensus 350 n~~~~~VsViD~~t~k~~~~i 370 (386)
T 3sjl_D 350 STGDKTLYIHDAESGEELRSV 370 (386)
T ss_dssp ETTTTEEEEEETTTCCEEEEE
T ss_pred cCCCCeEEEEECCCCcEEEEe
Confidence 45899999999999876543
No 204
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.28 E-value=1.5e-12 Score=132.12 Aligned_cols=98 Identities=14% Similarity=0.259 Sum_probs=85.7
Q ss_pred HHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccC
Q 048801 1613 RDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFI 1692 (1715)
Q Consensus 1613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~ 1692 (1715)
+.+|...|..+. ..++...|..+++....++|...+..|||++||++||++++|++++++..||++|++||.+||.
T Consensus 18 ~~~~~~il~~l~----~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 93 (116)
T 3nxb_A 18 FTAMYKVLDVVK----AHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNG 93 (116)
T ss_dssp HHHHHHHHHHHH----HSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH----hCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 444555555543 3466677888888778899999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhhc
Q 048801 1693 KNAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1693 ~~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
++++|..+|+.|.++|.+.+.+
T Consensus 94 ~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 94 ESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998864
No 205
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=5.3e-12 Score=129.27 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=89.2
Q ss_pred ChHHHHHHhhhHHHhhhhc--cccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Q 048801 1609 DSESRDKLLSSFNKLEQSV--SRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSN 1686 (1715)
Q Consensus 1609 ~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~N 1686 (1715)
.+...+++...|..+.... ...+....|..+++....++|...+..||||+||++||++++|+++++++.||++|++|
T Consensus 11 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 90 (123)
T 2dat_A 11 PPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHN 90 (123)
T ss_dssp CHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 3444455555555554321 12345677888888788899999999999999999999999999999999999999999
Q ss_pred hhhccCCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1687 AESYFIKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1687 a~~~n~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
|.+||.+++.|..+|+.|.++|.+.+.+|
T Consensus 91 a~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 119 (123)
T 2dat_A 91 AQTFNLEGSQIYEDSIVLQSVFKSARQSG 119 (123)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999998765
No 206
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.26 E-value=2.9e-12 Score=135.82 Aligned_cols=103 Identities=15% Similarity=0.161 Sum_probs=91.4
Q ss_pred HHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhcc
Q 048801 1612 SRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYF 1691 (1715)
Q Consensus 1612 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n 1691 (1715)
.+++|+..+.++......++.+..|..+......++|...+..||||+||++||++++|++++++..||++|++||.+||
T Consensus 28 ~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 107 (150)
T 3tlp_A 28 RMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYN 107 (150)
T ss_dssp HHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 45666677766655444566678888888888899999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhhc
Q 048801 1692 IKNAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1692 ~~~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
.+++.|..+|+.|.++|.+++.+
T Consensus 108 ~~~s~i~~~A~~L~~~f~~~~~~ 130 (150)
T 3tlp_A 108 EEGSQVYNDAHILEKLLKEKRKE 130 (150)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998865
No 207
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.26 E-value=2.2e-12 Score=136.95 Aligned_cols=86 Identities=22% Similarity=0.298 Sum_probs=80.1
Q ss_pred cchhhhhHHHHHHh--hhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHH
Q 048801 1630 KQDYYGIQRLNEAA--QKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDW 1707 (1715)
Q Consensus 1630 ~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~ 1707 (1715)
.+....|..+++.. ..++|...+..||||+||++||++++|++++++..||++|++||++||.+++.|..+|+.|.++
T Consensus 47 ~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~i~~~A~~L~~~ 126 (154)
T 4alg_A 47 HQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKI 126 (154)
T ss_dssp STTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 46677788888755 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC
Q 048801 1708 FNRTLNKL 1715 (1715)
Q Consensus 1708 ~~~~i~~~ 1715 (1715)
|.+.+.+|
T Consensus 127 f~~~~~~l 134 (154)
T 4alg_A 127 FLQKVASM 134 (154)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHHC
Confidence 99999875
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.26 E-value=3.5e-10 Score=149.74 Aligned_cols=282 Identities=14% Similarity=0.072 Sum_probs=174.6
Q ss_pred cCCCCEEEEEeCCCc---EEEEeC--C---CCcEEEEe------cCCCCCeEEEEECCCCCEEEEEeCC-----CeeEEE
Q 048801 252 DRSGRFVITGSDDRL---VKIWSM--E---TAFCLASC------RGHEGDITDLAVSSNNTLVASASND-----FVIRVW 312 (1715)
Q Consensus 252 SpDG~~LaTGS~DGt---IrIWDl--~---tgk~l~tL------~gHs~~VtsLafSpDg~lLASGS~D-----GtIrVW 312 (1715)
+|+|++++....++. -.||-. . .+.....+ .+|...+..++|||||++||.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 388998887664432 455543 3 33332221 2344478899999999999887654 469999
Q ss_pred ECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCc--------------EEEEecCCCCCcceecCCCCCCCcc
Q 048801 313 RLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGT--------------CRIWDARYSQYSPRIYLPKPPDAIT 378 (1715)
Q Consensus 313 Dl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGt--------------VrIWDl~tg~~l~~i~~~~~~~~i~ 378 (1715)
|+.+|+.+... .+...+..++|+|+ + .|+.++.++. |++|++.++.....+....
T Consensus 195 dl~tg~~~~~~-~~~~~~~~~~wspD-~---~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~------ 263 (741)
T 1yr2_A 195 GVADGKPLADE-LKWVKFSGLAWLGN-D---ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT------ 263 (741)
T ss_dssp ETTTCCEEEEE-EEEEESCCCEESTT-S---EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC------
T ss_pred ECCCCCCCCcc-CCCceeccEEEECC-C---EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc------
Confidence 99999876532 12222467899999 7 5666655543 8889887665322211100
Q ss_pred CccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC-----eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeE
Q 048801 379 GKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT-----FARVWSACKSSVEDSEQPIHELDVLSGHENDVNY 453 (1715)
Q Consensus 379 g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG-----~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~s 453 (1715)
..+...+..+.|+|||++|+..+.++ .|++||+.++.. .....+..+...+..
T Consensus 264 ---------------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~-------~~~~~l~~~~~~~~~ 321 (741)
T 1yr2_A 264 ---------------PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI-------GPVTALIPDLKAQWD 321 (741)
T ss_dssp ---------------TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE-------CCCEEEECSSSSCEE
T ss_pred ---------------CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC-------cccEEecCCCCceEE
Confidence 11122478899999999888776543 899999875410 102334444444444
Q ss_pred EEEccCcccccccccccccccccccccCCcccCceEEEEcC----CCeEEEEecCCCccCcccccccccccccCCCCCCC
Q 048801 454 VQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR----DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLP 529 (1715)
Q Consensus 454 Lafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~----DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~ 529 (1715)
.. ++++ +.|+..+. ++.|.+|++.++. ..|..
T Consensus 322 ~~-~~dg--------------------------~~l~~~s~~~~~~~~l~~~d~~~~~-----~~~~~------------ 357 (741)
T 1yr2_A 322 FV-DGVG--------------------------DQLWFVSGDGAPLKKIVRVDLSGST-----PRFDT------------ 357 (741)
T ss_dssp EE-EEET--------------------------TEEEEEECTTCTTCEEEEEECSSSS-----CEEEE------------
T ss_pred EE-eccC--------------------------CEEEEEECCCCCCCEEEEEeCCCCc-----cccEE------------
Confidence 43 3554 45555544 4568899887521 01111
Q ss_pred CCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECC-CCceEEEEec-CCCCeEEEEEccCCCcEEEEEe
Q 048801 530 PQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV-DGSLVHSLTG-HSASSYVLDVHPFNPRIAMSAG 607 (1715)
Q Consensus 530 ~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~-sg~~l~tL~g-H~~~V~sLafSP~dg~lLaSgs 607 (1715)
.+..+...+..++|+ ++.++++...|+..+||.+. ++..+..+.. +.+.|..+.++|++..++++.+
T Consensus 358 ----------l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~s 426 (741)
T 1yr2_A 358 ----------VVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFS 426 (741)
T ss_dssp ----------EECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEE
T ss_pred ----------EecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEc
Confidence 111223346677777 66788888889987777554 5666777765 3667889999996655665544
Q ss_pred ---CCCcEEEEECCCCc
Q 048801 608 ---YDGRTIVWDIWEGT 621 (1715)
Q Consensus 608 ---~DGtI~VWDl~tgk 621 (1715)
..++|++||+.+++
T Consensus 427 s~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 427 SFTQPATVLALDPATAK 443 (741)
T ss_dssp ETTEEEEEEEEETTTTE
T ss_pred CCCCCCEEEEEECCCCc
Confidence 34789999998886
No 209
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.26 E-value=2.9e-12 Score=132.17 Aligned_cols=86 Identities=24% Similarity=0.374 Sum_probs=80.3
Q ss_pred cchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHH
Q 048801 1630 KQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFN 1709 (1715)
Q Consensus 1630 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~ 1709 (1715)
.+....|..+++....++|...+..||||+||++||++++|+++++++.||++|++||.+||.+++.|.++|+.|.+.|.
T Consensus 38 ~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~ 117 (130)
T 3k2j_A 38 QLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQ 117 (130)
T ss_dssp CBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 44467788888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC
Q 048801 1710 RTLNKL 1715 (1715)
Q Consensus 1710 ~~i~~~ 1715 (1715)
+.+.+|
T Consensus 118 ~~~~~l 123 (130)
T 3k2j_A 118 AKKKEL 123 (130)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988653
No 210
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.26 E-value=2.1e-12 Score=131.63 Aligned_cols=86 Identities=21% Similarity=0.290 Sum_probs=80.3
Q ss_pred cchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHH
Q 048801 1630 KQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFN 1709 (1715)
Q Consensus 1630 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~ 1709 (1715)
.+....|..+......++|...+..|||++||++||++++|++++++..||++|++||.+||.+++.|..+|+.|.++|.
T Consensus 29 ~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~ 108 (120)
T 3ljw_A 29 RLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFY 108 (120)
T ss_dssp CBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 34477888888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC
Q 048801 1710 RTLNKL 1715 (1715)
Q Consensus 1710 ~~i~~~ 1715 (1715)
+.+.+|
T Consensus 109 ~~~~~i 114 (120)
T 3ljw_A 109 MKKAEI 114 (120)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988753
No 211
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.25 E-value=3.4e-12 Score=131.71 Aligned_cols=105 Identities=18% Similarity=0.234 Sum_probs=88.4
Q ss_pred HHHHHHhhhHHHhhhh---ccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhh
Q 048801 1611 ESRDKLLSSFNKLEQS---VSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNA 1687 (1715)
Q Consensus 1611 ~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na 1687 (1715)
...+++...|..+... ....+.+..|..+++....++|...+..||||+||++||++++|++++++..||++|++||
T Consensus 11 ~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na 90 (129)
T 2grc_A 11 NLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNA 90 (129)
T ss_dssp HHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 3344444444444432 2345667788888888889999999999999999999999999999999999999999999
Q ss_pred hhccCCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1688 ESYFIKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1688 ~~~n~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
.+||.+++.|..+|+.|.++|.+.+..|
T Consensus 91 ~~yN~~~s~i~~~A~~L~~~f~~~~~~l 118 (129)
T 2grc_A 91 QTFNLEGSLIYEDSIVLQSVFTSVRQKI 118 (129)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999887653
No 212
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.25 E-value=3.4e-10 Score=149.89 Aligned_cols=279 Identities=12% Similarity=0.011 Sum_probs=174.5
Q ss_pred CCCCEEEEEeCCCe---eEEEEC--C---CCCceEEE------eCCCCCeEEEEecCCCCcceEEEEecCC-----CcEE
Q 048801 295 SNNTLVASASNDFV---IRVWRL--P---DGLPISVL------RGHTGAVTAIAFSPRPSAIYQLLSSSDD-----GTCR 355 (1715)
Q Consensus 295 pDg~lLASGS~DGt---IrVWDl--~---tg~~l~~L------~gH~~~VtsLafSPdg~~~~~LaSgS~D-----GtVr 355 (1715)
|+|.+++....++. -.||.. . .+.....+ .+|...+..++|||+++ +|+.++.+ ..|+
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~---~la~~~~~~G~e~~~i~ 192 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGR---LLAYSVQDGGSDWRTVK 192 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSS---EEEEEEEETTCSEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCC---EEEEEEcCCCCceEEEE
Confidence 77777776654432 445543 3 33333222 12334688999999998 55554332 4699
Q ss_pred EEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCe--------------E
Q 048801 356 IWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTF--------------A 421 (1715)
Q Consensus 356 IWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~--------------I 421 (1715)
+||+.+++.+... . +...+..++|+|| +.|+.++.++. |
T Consensus 193 v~dl~tg~~~~~~-~-------------------------~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v 245 (741)
T 1yr2_A 193 FVGVADGKPLADE-L-------------------------KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTV 245 (741)
T ss_dssp EEETTTCCEEEEE-E-------------------------EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEE
T ss_pred EEECCCCCCCCcc-C-------------------------CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEE
Confidence 9999988753211 0 0111357899999 88888776554 8
Q ss_pred EEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC-----C
Q 048801 422 RVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD-----G 496 (1715)
Q Consensus 422 rVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D-----G 496 (1715)
++|++.++... ...+.....+...+..+.|+|++ +.|+..+.+ .
T Consensus 246 ~~~~lgt~~~~-----~~lv~~~~~~~~~~~~~~~SpDG--------------------------~~l~~~~~~~~~~~~ 294 (741)
T 1yr2_A 246 WLHRLGTPQSA-----DQPVFATPELPKRGHGASVSSDG--------------------------RWVVITSSEGTDPVN 294 (741)
T ss_dssp EEEETTSCGGG-----CEEEECCTTCTTCEEEEEECTTS--------------------------CEEEEEEECTTCSCC
T ss_pred EEEECCCCchh-----CEEEeccCCCCeEEEEEEECCCC--------------------------CEEEEEEEccCCCcc
Confidence 89998664310 11222223333458899999987 566665543 3
Q ss_pred eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC----CeEEEE
Q 048801 497 SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD----CRICVW 572 (1715)
Q Consensus 497 sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D----GtI~IW 572 (1715)
.|.+||+.++.. .....+..+...+... ++|+|+.|+..+.+ +.|.+|
T Consensus 295 ~l~~~d~~~~~~---------------------------~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~ 346 (741)
T 1yr2_A 295 TVHVARVTNGKI---------------------------GPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRV 346 (741)
T ss_dssp EEEEEEEETTEE---------------------------CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEE
T ss_pred eEEEEECCCCCC---------------------------cccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEE
Confidence 788998875310 0011222223334444 34899988887763 459999
Q ss_pred ECCCC--ceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC-CCceEEEEEc-ccceEEEEEEcCCCCEEEEE
Q 048801 573 NAVDG--SLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW-EGTPIRIYEI-GRFKLVDGKFSPDGTSIVLS 648 (1715)
Q Consensus 573 Dl~sg--~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~-tgk~l~tl~~-h~~~V~svafSPDG~~LAsg 648 (1715)
++.++ .....+..+...+..++|+ ++.++++...||..+||.+. +|..+..+.. +.+.+..+.++||+..|+..
T Consensus 347 d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~ 424 (741)
T 1yr2_A 347 DLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLS 424 (741)
T ss_dssp ECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEE
T ss_pred eCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEE
Confidence 99875 3333444445556667775 56888999999987777654 5666666654 35678889999999877743
Q ss_pred e----CCCeEEEEECCCCcc
Q 048801 649 D----DVGQIYLLNTGQGES 664 (1715)
Q Consensus 649 s----~DG~I~IWdl~tGe~ 664 (1715)
. ..+.|++||+.+|+.
T Consensus 425 ~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 425 FSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEETTEEEEEEEEETTTTEE
T ss_pred EcCCCCCCEEEEEECCCCcE
Confidence 2 347999999988864
No 213
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.24 E-value=4.9e-12 Score=128.22 Aligned_cols=103 Identities=17% Similarity=0.249 Sum_probs=88.6
Q ss_pred HHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhcc
Q 048801 1612 SRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYF 1691 (1715)
Q Consensus 1612 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n 1691 (1715)
.+.+|+..|.+.... ...+....|..+......++|...+..|||++||++||+++.|++++++..||++|++||.+||
T Consensus 9 ~c~~il~~l~~~~d~-~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 87 (116)
T 3iu5_A 9 VCHELYNTIRDYKDE-QGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYY 87 (116)
T ss_dssp HHHHHHHHHHHCBCT-TCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhcc-CCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 356666666665332 2335567788888888889999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1692 IKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1692 ~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
.+++.|..+|+.|.++|.+.+.+|
T Consensus 88 ~~~s~~~~~A~~L~~~f~~~~~~l 111 (116)
T 3iu5_A 88 KPDSPEYKAACKLWDLYLRTRNEF 111 (116)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988753
No 214
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.24 E-value=8.2e-10 Score=128.76 Aligned_cols=236 Identities=11% Similarity=-0.015 Sum_probs=165.4
Q ss_pred CCCCEEEEEeCCCeeEEEECCCCCceEEEeCCC-CCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCC
Q 048801 295 SNNTLVASASNDFVIRVWRLPDGLPISVLRGHT-GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKP 373 (1715)
Q Consensus 295 pDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~-~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~ 373 (1715)
..+++|++++.++.|.+||..+|+.+..+..+. ..+.+++++|++. +|+ +.++.|..||. +++.+..+..+
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~---ilv--s~~~~V~~~d~-~G~~~W~~~~~-- 74 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGE---ILF--SYSKGAKMITR-DGRELWNIAAP-- 74 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSC---EEE--ECBSEEEEECT-TSCEEEEEECC--
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCC---EEE--eCCCCEEEECC-CCCEEEEEcCC--
Confidence 346799999999999999999999999998776 5789999999987 566 45778999998 78776665431
Q ss_pred CCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC-CCeEEEEeCCCCCccCCCCCceeeeeec------C
Q 048801 374 PDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS-DTFARVWSACKSSVEDSEQPIHELDVLS------G 446 (1715)
Q Consensus 374 ~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~-DG~IrVWDl~t~~~~~~~~~~~~l~~l~------g 446 (1715)
....+.++.+.++|+++++.+. ++.|..++. +++. +..+. .
T Consensus 75 ----------------------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~---------l~~~~~~~~~~~ 122 (276)
T 3no2_A 75 ----------------------AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEV---------LSKTEFETGIER 122 (276)
T ss_dssp ----------------------TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCE---------EEEEEECCSCSS
T ss_pred ----------------------CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCE---------EEEEeccCCCCc
Confidence 1234788999999999999877 777877776 3321 11111 1
Q ss_pred CCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCC
Q 048801 447 HENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPP 526 (1715)
Q Consensus 447 H~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~ 526 (1715)
+......+.+.+++ +++++...++.|.+||.. ++.+..+.
T Consensus 123 ~~~~~~~v~~~~~G--------------------------~~lv~~~~~~~v~~~d~~-G~~~w~~~------------- 162 (276)
T 3no2_A 123 PHAQFRQINKNKKG--------------------------NYLVPLFATSEVREIAPN-GQLLNSVK------------- 162 (276)
T ss_dssp GGGSCSCCEECTTS--------------------------CEEEEETTTTEEEEECTT-SCEEEEEE-------------
T ss_pred ccccccCceECCCC--------------------------CEEEEecCCCEEEEECCC-CCEEEEEE-------------
Confidence 11123334445544 789999999999999987 55322210
Q ss_pred CCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCC------CCeEEEEEccCCC
Q 048801 527 PLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHS------ASSYVLDVHPFNP 600 (1715)
Q Consensus 527 ~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~------~~V~sLafSP~dg 600 (1715)
. ...+.++.+.++|.+|+++..++.|..+|..+|+.+..+..+. ..+..++..+ ++
T Consensus 163 ----------------~-~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~-~G 224 (276)
T 3no2_A 163 ----------------L-SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ-NG 224 (276)
T ss_dssp ----------------C-SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT-TS
T ss_pred ----------------C-CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC-CC
Confidence 0 1234557788999999999988999999999999999997542 2267777877 66
Q ss_pred cEEEEEe--CC------CcEEEEEC-CCCceEEEEEc
Q 048801 601 RIAMSAG--YD------GRTIVWDI-WEGTPIRIYEI 628 (1715)
Q Consensus 601 ~lLaSgs--~D------GtI~VWDl-~tgk~l~tl~~ 628 (1715)
.++++.. .. +..+++.+ .+|+.+..+..
T Consensus 225 ~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 225 GLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND 261 (276)
T ss_dssp CEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred CEEEEeccCccccccccCCceEEEECCCCCEEEEecC
Confidence 6666653 11 12344444 46666666653
No 215
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.24 E-value=1.8e-09 Score=125.71 Aligned_cols=253 Identities=11% Similarity=0.064 Sum_probs=167.0
Q ss_pred cCCCCCeEEEEECCCCCEEEE-------EeCCCeeEEEECCCCCceEEEe----CCCCCeEEEEecCC-CCcceEEEEec
Q 048801 282 RGHEGDITDLAVSSNNTLVAS-------ASNDFVIRVWRLPDGLPISVLR----GHTGAVTAIAFSPR-PSAIYQLLSSS 349 (1715)
Q Consensus 282 ~gHs~~VtsLafSpDg~lLAS-------GS~DGtIrVWDl~tg~~l~~L~----gH~~~VtsLafSPd-g~~~~~LaSgS 349 (1715)
...-....+++|+++|.++++ +..++.|.+||..+++...... ++...+.+++++++ +. |+.++
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~----l~v~~ 89 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ----LFVAD 89 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE----EEEEE
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc----EEEEE
Confidence 334456789999999988888 5778999999988887543322 25567999999998 53 44444
Q ss_pred CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC-----------
Q 048801 350 DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD----------- 418 (1715)
Q Consensus 350 ~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D----------- 418 (1715)
..+.|.+||.. ++....... .. .......+.+++++++|+++++...+
T Consensus 90 ~~~~l~~~d~~-g~~~~~~~~-~~-------------------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~ 148 (314)
T 1pjx_A 90 MRLGLLVVQTD-GTFEEIAKK-DS-------------------EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSM 148 (314)
T ss_dssp TTTEEEEEETT-SCEEECCSB-CT-------------------TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred CCCCEEEEeCC-CCEEEEEec-cC-------------------CCccccCCcCEEECCCCCEEEEecCcccccccccccc
Confidence 44478899987 553211000 00 00112457899999999988877654
Q ss_pred ----CeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEc----cCcccccccccccccccccccccCCcccCceEE
Q 048801 419 ----TFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS----GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIV 490 (1715)
Q Consensus 419 ----G~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafs----pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~La 490 (1715)
+.|..|+.. ++. ..+..+......++|+ +++ ...++
T Consensus 149 ~~~~~~l~~~~~~-g~~----------~~~~~~~~~~~~i~~~~~~d~dg-------------------------~~l~v 192 (314)
T 1pjx_A 149 QEKFGSIYCFTTD-GQM----------IQVDTAFQFPNGIAVRHMNDGRP-------------------------YQLIV 192 (314)
T ss_dssp SSSCEEEEEECTT-SCE----------EEEEEEESSEEEEEEEECTTSCE-------------------------EEEEE
T ss_pred cCCCCeEEEECCC-CCE----------EEeccCCCCcceEEEecccCCCC-------------------------CEEEE
Confidence 567777654 221 1112223346778888 765 12445
Q ss_pred EEcCCCeEEEEecC-CCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCC-CCeeEEEeCCCCCEEEEEecCCe
Q 048801 491 TCSRDGSAIIWIPR-SRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTP-RGVNMIVWSLDNRFVLAAIMDCR 568 (1715)
Q Consensus 491 SgS~DGsIrIWDl~-t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~-~~VtslafSPDG~~LaTgs~DGt 568 (1715)
+...++.|.+|++. ++... ... . ...+..+. ..+..++++++|.++++...++.
T Consensus 193 ~~~~~~~i~~~~~~~~g~~~----~~~-~-------------------~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 193 AETPTKKLWSYDIKGPAKIE----NKK-V-------------------WGHIPGTHEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp EETTTTEEEEEEEEETTEEE----EEE-E-------------------EEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred EECCCCeEEEEECCCCCccc----cce-E-------------------EEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence 55678999999875 22100 000 0 00111122 45678999999998888878899
Q ss_pred EEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC
Q 048801 569 ICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 569 I~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t 619 (1715)
|.+||..+++.+..+..+...+.+++|++++..++++...++.|..|++..
T Consensus 249 i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 249 IEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999999888888888777788999999994433666666778999999864
No 216
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.23 E-value=1e-11 Score=133.48 Aligned_cols=104 Identities=16% Similarity=0.192 Sum_probs=85.9
Q ss_pred CChHHHHHHhhhHHHhhhhccccchhhhhHHHHHH--hhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHh
Q 048801 1608 IDSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEA--AQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLS 1685 (1715)
Q Consensus 1608 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~ 1685 (1715)
+...-+..+...|..| .+.+....|..+++. ...++|+..+..||||+||++||++++|++++++..||++|++
T Consensus 18 ~~~~~~~~~~~il~~L----~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~ 93 (166)
T 3fkm_X 18 GNKQWYLLANQLILSL----SKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFD 93 (166)
T ss_dssp TTHHHHHHHHHHHHHH----TTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH----HhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 3334444444455554 344667778888764 4689999999999999999999999999999999999999999
Q ss_pred hhhhccCCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1686 NAESYFIKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1686 Na~~~n~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
||.+||.+++.|..+|+.|.++|.+.+..|
T Consensus 94 Na~~yN~~~s~i~~~A~~L~~~f~~~l~~~ 123 (166)
T 3fkm_X 94 NCSLYNTSNSVVAITGKNIETYFNNQLIVM 123 (166)
T ss_dssp HHHHSSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999988654
No 217
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.22 E-value=8.3e-12 Score=128.43 Aligned_cols=86 Identities=27% Similarity=0.359 Sum_probs=79.0
Q ss_pred cchhhhhHHHHHH--hhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHH
Q 048801 1630 KQDYYGIQRLNEA--AQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDW 1707 (1715)
Q Consensus 1630 ~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~ 1707 (1715)
.+....|..+++. ...++|...+..||||+||++||++++|++++++..||++|++||.+||.+++.|..+|+.|.++
T Consensus 36 ~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~ 115 (127)
T 2oss_A 36 HQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKL 115 (127)
T ss_dssp STTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred CccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 4566677777764 36899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC
Q 048801 1708 FNRTLNKL 1715 (1715)
Q Consensus 1708 ~~~~i~~~ 1715 (1715)
|.+.+.+|
T Consensus 116 f~~~~~~l 123 (127)
T 2oss_A 116 FLQKINEL 123 (127)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHC
Confidence 99999875
No 218
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.21 E-value=1.1e-11 Score=126.33 Aligned_cols=104 Identities=17% Similarity=0.234 Sum_probs=85.9
Q ss_pred HHHHHHhhhHHHhhhhccccchhhhhHHHHHHhh--hccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhh
Q 048801 1611 ESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQ--KLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAE 1688 (1715)
Q Consensus 1611 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~ 1688 (1715)
+..+++...|.++... ........|..+++... .++|...+..|||++||++||+++.|++++++..||++|++||.
T Consensus 9 ~~l~~c~~il~~l~~~-~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 87 (120)
T 3jvl_A 9 EQLKCCSGILKEMFAK-KHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCY 87 (120)
T ss_dssp HHHHHHHHHHHHHTSG-GGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-cCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 3444555555555432 11122455777776665 79999999999999999999999999999999999999999999
Q ss_pred hccCCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1689 SYFIKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1689 ~~n~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
+||.+++.|..+|+.|.+.|.+.+.+|
T Consensus 88 ~yN~~~s~~~~~A~~L~~~f~~~~~~~ 114 (120)
T 3jvl_A 88 KYNPPDHEVVAMARKLQDVFEMRFAKM 114 (120)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999998875
No 219
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.21 E-value=6.7e-12 Score=127.45 Aligned_cols=86 Identities=16% Similarity=0.269 Sum_probs=79.8
Q ss_pred cchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHH
Q 048801 1630 KQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFN 1709 (1715)
Q Consensus 1630 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~ 1709 (1715)
.+....|..+++....++|...+..|||++||++||+++.|++++++..||++|++||.+||.+++.|..+|+.|.+.|.
T Consensus 28 ~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~ 107 (117)
T 3g0l_A 28 HEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFE 107 (117)
T ss_dssp STTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHH
T ss_pred CCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 35677788888877789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC
Q 048801 1710 RTLNKL 1715 (1715)
Q Consensus 1710 ~~i~~~ 1715 (1715)
+.+.+|
T Consensus 108 ~~~~~~ 113 (117)
T 3g0l_A 108 KKWTDT 113 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988653
No 220
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.21 E-value=1.3e-11 Score=126.67 Aligned_cols=104 Identities=19% Similarity=0.241 Sum_probs=87.3
Q ss_pred HHHHHhhhHHHhhhhc--cccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhh
Q 048801 1612 SRDKLLSSFNKLEQSV--SRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAES 1689 (1715)
Q Consensus 1612 ~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~ 1689 (1715)
.+.++...+..+.... ...+....|..+.+....++|...+..||||+||++||+++.|++++++..||++|++||.+
T Consensus 16 l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 95 (124)
T 3mb4_A 16 MQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACT 95 (124)
T ss_dssp HHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3444444444444321 22455677888888888899999999999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1690 YFIKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1690 ~n~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
||.+++.|..+|+.|.+.|.+.+.+|
T Consensus 96 yN~~~s~i~~~A~~L~~~f~~~~~~l 121 (124)
T 3mb4_A 96 YNEPESLIYKDALVLHKVLLETRRDL 121 (124)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988764
No 221
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.21 E-value=1e-09 Score=135.31 Aligned_cols=304 Identities=14% Similarity=0.057 Sum_probs=188.9
Q ss_pred CCCCEEEEEeC-C----CcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEe----------CCCeeEEEECCCC
Q 048801 253 RSGRFVITGSD-D----RLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASAS----------NDFVIRVWRLPDG 317 (1715)
Q Consensus 253 pDG~~LaTGS~-D----GtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS----------~DGtIrVWDl~tg 317 (1715)
++++++++... + +.|.++|+.+++.+.++.....+ .++++|||++|+++. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 45666665544 2 69999999999999998865556 899999999888776 3678999999999
Q ss_pred CceEEEeCC-------CCCeEEEEecCCCCcceEEEEecC--CCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCC
Q 048801 318 LPISVLRGH-------TGAVTAIAFSPRPSAIYQLLSSSD--DGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNG 388 (1715)
Q Consensus 318 ~~l~~L~gH-------~~~VtsLafSPdg~~~~~LaSgS~--DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~ 388 (1715)
+.+..+.-. ......++|+|+++ +|+++.. ++.|.+.|+.+++.+..+.++.
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk---~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g---------------- 220 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNK---NLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD---------------- 220 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSS---EEEEEECSSSCEEEEEETTTTEEEEEEECCS----------------
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCC---EEEEEecCCCCeEEEEECCCCeEEEEEEcCC----------------
Confidence 988887521 23456789999998 5665543 6889999999988776664321
Q ss_pred CCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCe-eEEEEccCccccccc
Q 048801 389 PSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDV-NYVQFSGCAVASRSA 466 (1715)
Q Consensus 389 ~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V-~sLafspdg~as~~~ 466 (1715)
+....|+| ..+++.+.||.+.+.+..+++.... ....+.....++ ..+.|.+++
T Consensus 221 -------------~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~-----~~~~~~v~~~p~~~~~~~~~dg------ 276 (426)
T 3c75_H 221 -------------CYHIFPASPTVFYMNCRDGSLARVDFADGETKVT-----NTEVFHTEDELLINHPAFSLRS------ 276 (426)
T ss_dssp -------------EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEE-----ECCCCSCTTSCBCSCCEECTTT------
T ss_pred -------------ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE-----eeeeeccCCCceeeEeeecCCC------
Confidence 11222322 3444455566666666533321000 000000001111 123344443
Q ss_pred ccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCC
Q 048801 467 MSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPR 546 (1715)
Q Consensus 467 ~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~ 546 (1715)
..++..+..|.+.+.|+.+..... ...|. +. .... ........
T Consensus 277 --------------------~~~~~~s~~g~V~ViD~~~~~~~v-~~~~~----~~-----------~~~~-i~~g~~p~ 319 (426)
T 3c75_H 277 --------------------GRLVWPTYTGKIFQADLTAEGATF-RAPIE----AL-----------TEAE-RADDWRPG 319 (426)
T ss_dssp --------------------CEEEEEBTTSEEEEEEECSSCEEE-CCCEE----SS-----------CTTT-GGGTEEEC
T ss_pred --------------------CEEEEEeCCCcEEEEeccCCceEE-eeeee----ec-----------cccc-cccccccC
Confidence 445555667899999886532110 00000 00 0000 00000122
Q ss_pred CeeEEEeCCCCCEEEEEec----------CCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEe-CCCcEEEE
Q 048801 547 GVNMIVWSLDNRFVLAAIM----------DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG-YDGRTIVW 615 (1715)
Q Consensus 547 ~VtslafSPDG~~LaTgs~----------DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs-~DGtI~VW 615 (1715)
....++++++++.|++... .+.|.++|+.+++.+.++.... ...+|+|+|++..+++++. .++.|.|+
T Consensus 320 g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVI 398 (426)
T 3c75_H 320 GWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIY 398 (426)
T ss_dssp SSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred CceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEE
Confidence 2334689999988777643 3579999999999999886432 4679999995542666666 69999999
Q ss_pred ECCCCceEEEE-EcccceEEEEEEcCC
Q 048801 616 DIWEGTPIRIY-EIGRFKLVDGKFSPD 641 (1715)
Q Consensus 616 Dl~tgk~l~tl-~~h~~~V~svafSPD 641 (1715)
|+.+++.++++ ..+..+. +..+||
T Consensus 399 D~~t~kvv~tI~~vG~~P~--~i~~~~ 423 (426)
T 3c75_H 399 DAATGEELRSVDQLGRGPQ--IITTHD 423 (426)
T ss_dssp ETTTCCEEEEECCCSSSCC--EEECCC
T ss_pred ECCCCCEEEEecCCCCCCc--EEEcCC
Confidence 99999999987 4343332 444554
No 222
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.20 E-value=1e-11 Score=125.79 Aligned_cols=84 Identities=18% Similarity=0.132 Sum_probs=77.4
Q ss_pred chhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHH
Q 048801 1631 QDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNR 1710 (1715)
Q Consensus 1631 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~ 1710 (1715)
+....|..+++....++|...+..|||++||++||+++.|++++++..||++|++||.+||.|++.|...|+.|.+.|.+
T Consensus 24 ~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~s~i~~~A~~L~~~f~~ 103 (117)
T 2i7k_A 24 DPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMK 103 (117)
T ss_dssp SGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSCSSSSHHHHHHHHHHHHHH
T ss_pred cccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 45566777777777899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hhhc
Q 048801 1711 TLNK 1714 (1715)
Q Consensus 1711 ~i~~ 1714 (1715)
.+..
T Consensus 104 ~~~~ 107 (117)
T 2i7k_A 104 ILSQ 107 (117)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 223
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.20 E-value=1.4e-11 Score=125.44 Aligned_cols=101 Identities=19% Similarity=0.270 Sum_probs=88.9
Q ss_pred HHHHHHhhhHHHhhhhccccchhhhhHHHHHHh--hhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhh
Q 048801 1611 ESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAA--QKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAE 1688 (1715)
Q Consensus 1611 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~ 1688 (1715)
+.+.+|+..|.++.+. ++....|..+++.. ..++|...+..|||++||++||+++.|++++++..||++|++||.
T Consensus 11 el~~~l~~~l~~l~~~---~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 87 (119)
T 3p1f_A 11 ELRQALMPTLEALYRQ---DPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAW 87 (119)
T ss_dssp HHHHHHHHHHHHHHTC---TTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---CCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 4577788888887652 34566677777654 689999999999999999999999999999999999999999999
Q ss_pred hccCCChHHHHHHHHHHHHHHHHhhc
Q 048801 1689 SYFIKNAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1689 ~~n~~~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
+||.+++.|..+|+.|.+.|.+.+..
T Consensus 88 ~yN~~~s~i~~~A~~L~~~f~~~~~~ 113 (119)
T 3p1f_A 88 LYNRKTSRVYKFCSKLAEVFEQEIDP 113 (119)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998865
No 224
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.19 E-value=1.4e-11 Score=127.99 Aligned_cols=103 Identities=16% Similarity=0.202 Sum_probs=90.0
Q ss_pred CCChHHHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhh--hhhhHHHHHHHHHHHH
Q 048801 1607 EIDSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNN--YYRSLEAAKDDINVML 1684 (1715)
Q Consensus 1607 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~--~Yr~~~~~~~d~~~~~ 1684 (1715)
.+.+..+.++...|..|.. ++....|..+++. ..++|...+..||||+||++||+++ .|++++++..||++|+
T Consensus 16 ~m~p~~~~~c~~il~~L~~----~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif 90 (135)
T 2yyn_A 16 KLTPIDKRKCERLLLFLYC----HEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIF 90 (135)
T ss_dssp CCCHHHHHHHHHHHHHHHT----SGGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh----CccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 4677777777777777754 3556667777765 6899999999999999999999994 8999999999999999
Q ss_pred hhhhhccCCChHHHHHHHHHHHHHHHHhhc
Q 048801 1685 SNAESYFIKNAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1685 ~Na~~~n~~~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
+||.+||.+++.|..+|+.|.++|.+.+..
T Consensus 91 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~ 120 (135)
T 2yyn_A 91 QNCAEFNEPDSEVANAGIKLENYFEELLKN 120 (135)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998865
No 225
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.18 E-value=1.6e-08 Score=122.02 Aligned_cols=308 Identities=10% Similarity=0.036 Sum_probs=191.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecCC---------CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeC
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLASCRGH---------EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRG 325 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~tL~gH---------s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~g 325 (1715)
+..|++++.++.|..+|..+|+.+..+... ...+.+.. ..++..|++++.++.|..+|..+|+.+.....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 567888888999999999999988766542 22332222 22456788888999999999999998877764
Q ss_pred CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEE
Q 048801 326 HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAY 405 (1715)
Q Consensus 326 H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtslaf 405 (1715)
.........+. ++ .++.++.++.|..+|..+++.+............ ... .....
T Consensus 132 ~~~~~~~p~~~-~~----~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~----------------~~~----~~~~~ 186 (376)
T 3q7m_A 132 AGEALSRPVVS-DG----LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL----------------RGE----SAPTT 186 (376)
T ss_dssp SSCCCSCCEEE-TT----EEEEECTTSEEEEEETTTCCEEEEEECCC---------------------CCC----CCCEE
T ss_pred CCceEcCCEEE-CC----EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceee----------------cCC----CCcEE
Confidence 43222222222 22 6788888999999999999877665432211000 000 01111
Q ss_pred ccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC----CeeEEEEccCcccccccccccccccccccccC
Q 048801 406 NANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN----DVNYVQFSGCAVASRSAMSDAFKEENVPKFKN 481 (1715)
Q Consensus 406 SpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~----~V~sLafspdg~as~~~~~~~~~~~~~~~~~~ 481 (1715)
. +..+++++.++.|..+|..+++. +........ .+..+.-. ...
T Consensus 187 ~--~~~v~~g~~~g~l~~~d~~tG~~---------~w~~~~~~~~~~~~~~~~~~~---------------------~~~ 234 (376)
T 3q7m_A 187 A--FGAAVVGGDNGRVSAVLMEQGQM---------IWQQRISQATGSTEIDRLSDV---------------------DTT 234 (376)
T ss_dssp E--TTEEEECCTTTEEEEEETTTCCE---------EEEEECCC-----------CC---------------------CCC
T ss_pred E--CCEEEEEcCCCEEEEEECCCCcE---------EEEEecccCCCCccccccccc---------------------CCC
Confidence 1 34677788899999999987643 111111000 00000000 000
Q ss_pred CcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEE
Q 048801 482 SWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL 561 (1715)
Q Consensus 482 s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~La 561 (1715)
.......++.++.+|.+..+|..+++.. |... ......+.. ++..|+
T Consensus 235 p~~~~~~v~~~~~~g~l~~~d~~tG~~~-----w~~~--------------------------~~~~~~~~~--~~~~l~ 281 (376)
T 3q7m_A 235 PVVVNGVVFALAYNGNLTALDLRSGQIM-----WKRE--------------------------LGSVNDFIV--DGNRIY 281 (376)
T ss_dssp CEEETTEEEEECTTSCEEEEETTTCCEE-----EEEC--------------------------CCCEEEEEE--ETTEEE
T ss_pred cEEECCEEEEEecCcEEEEEECCCCcEE-----eecc--------------------------CCCCCCceE--ECCEEE
Confidence 0011357888888999999999876532 2111 011223333 466788
Q ss_pred EEecCCeEEEEECCCCceEEEEec-CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEE-EEEc
Q 048801 562 AAIMDCRICVWNAVDGSLVHSLTG-HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVD-GKFS 639 (1715)
Q Consensus 562 Tgs~DGtI~IWDl~sg~~l~tL~g-H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~s-vafS 639 (1715)
+++.++.|..+|..+|+.+..... ....+..+... + ..|+.++.+|.|.++|..+|+.+..+......+.. ...
T Consensus 282 ~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~-~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~- 357 (376)
T 3q7m_A 282 LVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--N-GNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA- 357 (376)
T ss_dssp EEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--T-TEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE-
T ss_pred EEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--C-CEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE-
Confidence 888899999999999999887762 22223333332 3 45667888999999999999999888753333332 222
Q ss_pred CCCCEEEEEeCCCeEEEEE
Q 048801 640 PDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 640 PDG~~LAsgs~DG~I~IWd 658 (1715)
.+..|++++.+|.|+.|+
T Consensus 358 -~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 358 -ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp -ETTEEEEEBTTSCEEEEE
T ss_pred -ECCEEEEEeCCCEEEEEe
Confidence 255788889999999987
No 226
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.18 E-value=1.3e-11 Score=125.89 Aligned_cols=85 Identities=18% Similarity=0.314 Sum_probs=79.3
Q ss_pred chhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHH
Q 048801 1631 QDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNR 1710 (1715)
Q Consensus 1631 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~ 1710 (1715)
+....|..+++....++|...+..|||++||++||+++.|++++++..||++|++||.+||.+++.|..+|+.|.++|.+
T Consensus 29 ~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~ 108 (121)
T 1e6i_A 29 AAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNN 108 (121)
T ss_dssp TTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH
T ss_pred CCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 55667788887778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcC
Q 048801 1711 TLNKL 1715 (1715)
Q Consensus 1711 ~i~~~ 1715 (1715)
.+..|
T Consensus 109 ~~~~~ 113 (121)
T 1e6i_A 109 KVKEI 113 (121)
T ss_dssp HHHTS
T ss_pred HHHHc
Confidence 98764
No 227
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.18 E-value=1.8e-11 Score=133.23 Aligned_cols=105 Identities=15% Similarity=0.266 Sum_probs=92.7
Q ss_pred CCChHHHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Q 048801 1607 EIDSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSN 1686 (1715)
Q Consensus 1607 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~N 1686 (1715)
.+++..+++|...|..|.. .+....|..+++....++|...+..||||+||++||+++.|++++++..||++|++|
T Consensus 68 ~l~~~~~~~l~~il~~l~~----~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 143 (174)
T 2ri7_A 68 PLTEKDYEGLKRVLRSLQA----HKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDN 143 (174)
T ss_dssp BCCHHHHHHHHHHHHHHHT----SGGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHh----hhhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4667777777777777654 355666777777777899999999999999999999999999999999999999999
Q ss_pred hhhccCCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1687 AESYFIKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1687 a~~~n~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
|.+||.+++.|.++|+.|.++|.+.+..|
T Consensus 144 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 144 CRYYNPSDSPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998865
No 228
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.18 E-value=5.1e-09 Score=121.95 Aligned_cols=247 Identities=10% Similarity=0.094 Sum_probs=160.6
Q ss_pred EcCCCCCeEEEEEcCCCCEEEE-------EeCCCcEEEEeCCCCcEEEEec----CCCCCeEEEEECCC-CCEEEEEeCC
Q 048801 239 LRGHRDAVYCAIFDRSGRFVIT-------GSDDRLVKIWSMETAFCLASCR----GHEGDITDLAVSSN-NTLVASASND 306 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~LaT-------GS~DGtIrIWDl~tgk~l~tL~----gHs~~VtsLafSpD-g~lLASGS~D 306 (1715)
+.+.-....+++|+++|.++++ +..++.|.+|+..+++...... ++...+.+++++++ |+++++.. .
T Consensus 13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~ 91 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-R 91 (314)
T ss_dssp EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-T
T ss_pred hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-C
Confidence 3444556789999999988888 5678899999988887643322 25577999999999 76555544 4
Q ss_pred CeeEEEECCCCCceEE-EeC----CCCCeEEEEecCCCCcceEEEEecCC---------------CcEEEEecCCCCCcc
Q 048801 307 FVIRVWRLPDGLPISV-LRG----HTGAVTAIAFSPRPSAIYQLLSSSDD---------------GTCRIWDARYSQYSP 366 (1715)
Q Consensus 307 GtIrVWDl~tg~~l~~-L~g----H~~~VtsLafSPdg~~~~~LaSgS~D---------------GtVrIWDl~tg~~l~ 366 (1715)
+.|.+||.. ++.... ... ....+.++++.+++. ++++...+ +.|..|+.. ++...
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~---l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~ 166 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN---LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ 166 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC---EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC---EEEEecCcccccccccccccCCCCeEEEECCC-CCEEE
Confidence 479999988 664332 221 123588999999986 55555444 456666654 33211
Q ss_pred eecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEc----cCCCeE-EEecCCCeEEEEeCC-CCCccCCCCCcee
Q 048801 367 RIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYN----ANGTVF-VTGSSDTFARVWSAC-KSSVEDSEQPIHE 440 (1715)
Q Consensus 367 ~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafS----pdG~~L-atGs~DG~IrVWDl~-t~~~~~~~~~~~~ 440 (1715)
.. .+......++|+ ++|+.| ++...++.|.+|++. ++.. .....
T Consensus 167 ~~--------------------------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~----~~~~~ 216 (314)
T 1pjx_A 167 VD--------------------------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI----ENKKV 216 (314)
T ss_dssp EE--------------------------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE----EEEEE
T ss_pred ec--------------------------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc----ccceE
Confidence 10 011235788999 999654 444567899999975 2211 00112
Q ss_pred eeeecCCC-CCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccc
Q 048801 441 LDVLSGHE-NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAY 519 (1715)
Q Consensus 441 l~~l~gH~-~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~ 519 (1715)
...+..+. ..+..+++++++ ..+++...++.|.+||..+++...
T Consensus 217 ~~~~~~~~~~~p~~i~~d~~G--------------------------~l~v~~~~~~~i~~~d~~~g~~~~--------- 261 (314)
T 1pjx_A 217 WGHIPGTHEGGADGMDFDEDN--------------------------NLLVANWGSSHIEVFGPDGGQPKM--------- 261 (314)
T ss_dssp EEECCCCSSCEEEEEEEBTTC--------------------------CEEEEEETTTEEEEECTTCBSCSE---------
T ss_pred EEECCCCCCCCCCceEECCCC--------------------------CEEEEEcCCCEEEEEcCCCCcEeE---------
Confidence 22333443 557788888876 567777778999999987543211
Q ss_pred cccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEE-ecCCeEEEEECCC
Q 048801 520 HLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAA-IMDCRICVWNAVD 576 (1715)
Q Consensus 520 ~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTg-s~DGtI~IWDl~s 576 (1715)
.+..+...+.+++|+++|+.|+++ ..++.|.+|++..
T Consensus 262 --------------------~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 262 --------------------RIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp --------------------EEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred --------------------EEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 111223568899999999955544 4567899999764
No 229
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.18 E-value=1.3e-11 Score=126.48 Aligned_cols=100 Identities=20% Similarity=0.219 Sum_probs=87.5
Q ss_pred HHHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhc
Q 048801 1611 ESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESY 1690 (1715)
Q Consensus 1611 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~ 1690 (1715)
.-++++...|..|.. .++...|..+++....++|...+..||||+||++||+++.|++++++..||++|++||.+|
T Consensus 10 ~~~~~c~~il~~l~~----~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 85 (123)
T 3q2e_A 10 NWKKQCKELVNLIFQ----CEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAY 85 (123)
T ss_dssp CHHHHHHHHHHHHHT----SGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh----CCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 345555555555543 3667788888888889999999999999999999999999999999999999999999999
Q ss_pred cCC-ChHHHHHHHHHHHHHHHHhhc
Q 048801 1691 FIK-NAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1691 n~~-~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
|.+ ++.|..+|+.|.++|.+.+..
T Consensus 86 N~~~~s~i~~~A~~L~~~f~~~~~~ 110 (123)
T 3q2e_A 86 TPNKRSKIYSMTLRLSALFEEKMKK 110 (123)
T ss_dssp SCCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 996 999999999999999998875
No 230
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.17 E-value=2.2e-11 Score=125.73 Aligned_cols=102 Identities=17% Similarity=0.219 Sum_probs=83.3
Q ss_pred HHHHhhhHHHhhhhccccchhhhhHHHHHHh--hhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhc
Q 048801 1613 RDKLLSSFNKLEQSVSRKQDYYGIQRLNEAA--QKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESY 1690 (1715)
Q Consensus 1613 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~ 1690 (1715)
..++...|.+|... .....+..|..+++.. ..++|...+..||||+||++||+++.|++++++..||++|++||.+|
T Consensus 24 l~~c~~il~~L~~~-~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~y 102 (130)
T 2ouo_A 24 LKCCSGILKEMFAK-KHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKY 102 (130)
T ss_dssp HHHHHHHHHHHTSG-GGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34444455555432 1112345577776543 47999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1691 FIKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1691 n~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
|.+++.|..+|+.|.++|.+.+..|
T Consensus 103 N~~~s~i~~~A~~L~~~f~~~~~~l 127 (130)
T 2ouo_A 103 NPPDHEVVAMARKLQDVFEMRFAKM 127 (130)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999998875
No 231
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=9.9e-12 Score=126.75 Aligned_cols=84 Identities=19% Similarity=0.231 Sum_probs=77.1
Q ss_pred chhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHH
Q 048801 1631 QDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNR 1710 (1715)
Q Consensus 1631 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~ 1710 (1715)
+....|..+++....++|...+..||||+||++||+++.|++++++..||++|++||.+||.+++.+.++|+.|.+.|.+
T Consensus 23 ~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~ 102 (121)
T 2d9e_A 23 DTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGA 102 (121)
T ss_dssp CSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH
T ss_pred CccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 44566777777777899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred Hhhc
Q 048801 1711 TLNK 1714 (1715)
Q Consensus 1711 ~i~~ 1714 (1715)
.+.+
T Consensus 103 ~l~~ 106 (121)
T 2d9e_A 103 VLRQ 106 (121)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 232
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.16 E-value=2e-11 Score=125.65 Aligned_cols=85 Identities=22% Similarity=0.376 Sum_probs=79.5
Q ss_pred cchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHH
Q 048801 1630 KQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFN 1709 (1715)
Q Consensus 1630 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~ 1709 (1715)
...+..|..+++....++|...+..|||++||++||+++.|++++++..||++|++||.+||.+++.|..+|+.|.++|.
T Consensus 30 ~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~ 109 (126)
T 3mqm_A 30 QALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRLRKAYY 109 (126)
T ss_dssp CBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHH
T ss_pred CChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 44567788888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc
Q 048801 1710 RTLNK 1714 (1715)
Q Consensus 1710 ~~i~~ 1714 (1715)
+.+.+
T Consensus 110 ~~~~~ 114 (126)
T 3mqm_A 110 NARHE 114 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 233
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.14 E-value=4.8e-09 Score=129.42 Aligned_cols=287 Identities=13% Similarity=0.043 Sum_probs=188.8
Q ss_pred CCCCEEEEEeCC-----CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec----------CCCcEEEEec
Q 048801 295 SNNTLVASASND-----FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS----------DDGTCRIWDA 359 (1715)
Q Consensus 295 pDg~lLASGS~D-----GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS----------~DGtVrIWDl 359 (1715)
+++..+++.... +.|.++|+.+++.+..+.....+ .++++|+++. |+++. .++.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~---lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSF---FAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSC---EEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCE---EEEEeccccccccCCCCCEEEEEEC
Confidence 466666655442 69999999999999998755555 8999999984 44333 4678999999
Q ss_pred CCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC--CCeEEEEeCCCCCccCCCCC
Q 048801 360 RYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS--DTFARVWSACKSSVEDSEQP 437 (1715)
Q Consensus 360 ~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~--DG~IrVWDl~t~~~~~~~~~ 437 (1715)
.+++.+..+.++...... .......++|+|||++|+++.. ++.|.++|+.+.+.
T Consensus 157 ~t~~vv~~I~v~g~~r~~------------------~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv------ 212 (426)
T 3c75_H 157 VTFLPIADIELPDAPRFL------------------VGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF------ 212 (426)
T ss_dssp TTCCEEEEEEETTCCCCC------------------BSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE------
T ss_pred CCCcEEEEEECCCccccc------------------cCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE------
Confidence 999887776553111000 0112356799999999888763 57899999987543
Q ss_pred ceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccc
Q 048801 438 IHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTR 517 (1715)
Q Consensus 438 ~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~ 517 (1715)
+..+.-.. +....|.+ ...+++.+.||.+.+.++.+++..... ..
T Consensus 213 ---v~~I~v~g----~~~~~p~g-------------------------~~~~v~~~~dG~~~~V~~~~~~v~~~~---~~ 257 (426)
T 3c75_H 213 ---DRMLDVPD----CYHIFPAS-------------------------PTVFYMNCRDGSLARVDFADGETKVTN---TE 257 (426)
T ss_dssp ---EEEEECCS----EEEEEEEE-------------------------TTEEEEEETTSSEEEEECCTTCCEEEE---CC
T ss_pred ---EEEEEcCC----ceeeccCC-------------------------CcEEEEEcCCCCEEEEECCCCcEEEEe---ee
Confidence 22222111 12233333 246777778999888888543322100 00
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEE--EEec----------
Q 048801 518 AYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVH--SLTG---------- 585 (1715)
Q Consensus 518 ~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~--tL~g---------- 585 (1715)
.+. ... ......+.|++++..++..+..+.|.+.|+....... .+.-
T Consensus 258 ~~~--------------------v~~-~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~ 316 (426)
T 3c75_H 258 VFH--------------------TED-ELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDW 316 (426)
T ss_dssp CCS--------------------CTT-SCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTE
T ss_pred eec--------------------cCC-CceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccc
Confidence 000 000 0011235778998888877888999999986554221 1110
Q ss_pred CCCCeEEEEEccCCCcEEEEEe---------CCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCC-EEEEEe-CCCeE
Q 048801 586 HSASSYVLDVHPFNPRIAMSAG---------YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGT-SIVLSD-DVGQI 654 (1715)
Q Consensus 586 H~~~V~sLafSP~dg~lLaSgs---------~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~-~LAsgs-~DG~I 654 (1715)
.......++++|++++++++.. .++.|.++|+.+++.+.++..+. ....++|+|||+ +|+++. .++.|
T Consensus 317 ~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~V 395 (426)
T 3c75_H 317 RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTL 395 (426)
T ss_dssp EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEE
T ss_pred ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeE
Confidence 0111223689996666666543 13579999999999999998543 578899999999 888887 58999
Q ss_pred EEEECCCCccccc
Q 048801 655 YLLNTGQGESQKD 667 (1715)
Q Consensus 655 ~IWdl~tGe~~k~ 667 (1715)
.|+|+.+++.++.
T Consensus 396 sVID~~t~kvv~t 408 (426)
T 3c75_H 396 HIYDAATGEELRS 408 (426)
T ss_dssp EEEETTTCCEEEE
T ss_pred EEEECCCCCEEEE
Confidence 9999999986654
No 234
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.14 E-value=1.9e-11 Score=127.23 Aligned_cols=85 Identities=21% Similarity=0.297 Sum_probs=78.6
Q ss_pred cchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHH
Q 048801 1630 KQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFN 1709 (1715)
Q Consensus 1630 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~ 1709 (1715)
.+....|..+++....++|...+..|||++||++||++++|++++++..||++|++||.+||.+++.+.+.|+.|.+.|.
T Consensus 28 ~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~ 107 (135)
T 3rcw_A 28 KDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGG 107 (135)
T ss_dssp TCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 35666778888777889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhc
Q 048801 1710 RTLNK 1714 (1715)
Q Consensus 1710 ~~i~~ 1714 (1715)
+.+.+
T Consensus 108 ~~~~~ 112 (135)
T 3rcw_A 108 VVLRQ 112 (135)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 235
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.13 E-value=2.6e-11 Score=126.23 Aligned_cols=99 Identities=17% Similarity=0.222 Sum_probs=86.4
Q ss_pred HHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhcc
Q 048801 1612 SRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYF 1691 (1715)
Q Consensus 1612 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n 1691 (1715)
.++++...|..|.. .+....|..+++....++|...+..||||+||++||+++.|.+++++..||++|++||.+||
T Consensus 22 l~~~~~~il~~l~~----~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 97 (135)
T 3mb3_A 22 WKKQCEELLNLIFQ----CEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYT 97 (135)
T ss_dssp HHHHHHHHHHHHHH----SGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHh----CCCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34455555555543 35677888888888899999999999999999999999999999999999999999999999
Q ss_pred CC-ChHHHHHHHHHHHHHHHHhhc
Q 048801 1692 IK-NAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1692 ~~-~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
.+ ++.|..+|+.|.++|.+.+..
T Consensus 98 ~~~~s~i~~~A~~L~~~f~~~~~~ 121 (135)
T 3mb3_A 98 PSKRSRIYSMSLRLSAFFEEHISS 121 (135)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 98 899999999999999998865
No 236
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.12 E-value=5.2e-11 Score=126.77 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=88.2
Q ss_pred HHHHhhhHHHhhhh-ccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhcc
Q 048801 1613 RDKLLSSFNKLEQS-VSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYF 1691 (1715)
Q Consensus 1613 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n 1691 (1715)
...|...|..+... ....+....|..+++....++|...+..||||+||++||++++|++++++..||++|++||.+||
T Consensus 27 ~~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN 106 (158)
T 3uv4_A 27 QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN 106 (158)
T ss_dssp HHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34444555554432 34456777888888888889999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1692 IKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1692 ~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
.+++.|.+.|+.|.+.|.+.+..+
T Consensus 107 ~~~s~i~~~A~~L~~~~~~~l~e~ 130 (158)
T 3uv4_A 107 GPESQYTKTAQEIVNVCYQTLTEY 130 (158)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988753
No 237
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.12 E-value=3.3e-11 Score=123.28 Aligned_cols=84 Identities=17% Similarity=0.111 Sum_probs=76.6
Q ss_pred chhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHH
Q 048801 1631 QDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNR 1710 (1715)
Q Consensus 1631 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~ 1710 (1715)
+....|..+++....++|...+..|||++||++||+++.|++++++..||++|++||.+||.|++.+.+.|+.|.+.|.+
T Consensus 29 ~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~ 108 (123)
T 3hme_A 29 DPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFK 108 (123)
T ss_dssp CTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH
T ss_pred CccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 44455677776667899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hhhc
Q 048801 1711 TLNK 1714 (1715)
Q Consensus 1711 ~i~~ 1714 (1715)
.+++
T Consensus 109 ~~~~ 112 (123)
T 3hme_A 109 MMSK 112 (123)
T ss_dssp HTCH
T ss_pred HHHH
Confidence 8764
No 238
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.10 E-value=1.8e-08 Score=124.14 Aligned_cols=255 Identities=11% Similarity=0.046 Sum_probs=166.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCC--eeEEEECCCCCceE
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDF--VIRVWRLPDGLPIS 321 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DG--tIrVWDl~tg~~l~ 321 (1715)
.....|+|+++|+++++...++.|++||..++.......... ... ++|++++..|++++.++ .|.+|+...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 467899999999988887778999999999887766655433 333 99999999999988866 78899987766544
Q ss_pred EE----eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCC
Q 048801 322 VL----RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQS 397 (1715)
Q Consensus 322 ~L----~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~ 397 (1715)
.+ ......+.+++++|++. .|+.+..++.|+.||..++... .+...... +. ...
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g---~lyv~d~~~~I~~~d~~~~~~~-~~~~~~~~----g~--------------~~~ 266 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEE---WLYFVDSNKNFGRFNVKTQEVT-LIKQLELS----GS--------------LGT 266 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSS---EEEEECTTCEEEEEETTTCCEE-EEEECCCC----SC--------------CCC
T ss_pred EeeeccchhcCCcEEEEEeCCCC---eEEEEECCCcEEEEECCCCCEE-EEeccccc----CC--------------CCC
Confidence 44 22456788999999554 4555677889999998866521 11000000 00 000
Q ss_pred cceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCC---------------CCCeeEEEEccCcc
Q 048801 398 HQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGH---------------ENDVNYVQFSGCAV 461 (1715)
Q Consensus 398 ~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH---------------~~~V~sLafspdg~ 461 (1715)
.+...++|+| ++.++++-..++.|+.|+.... +..+.++ -.....+++++++
T Consensus 267 ~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-----------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG- 334 (409)
T 3hrp_A 267 NPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-----------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG- 334 (409)
T ss_dssp SSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-----------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-
T ss_pred CccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-----------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-
Confidence 0112899999 5777777777899999987532 1111121 2346778888876
Q ss_pred cccccccccccccccccccCCcccCceEEEEc-CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc
Q 048801 462 ASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR 540 (1715)
Q Consensus 462 as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 540 (1715)
.++++-. .++.|+.|++.++......+.... . ....+. .
T Consensus 335 -------------------------~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~---------~---g~~~g~---~ 374 (409)
T 3hrp_A 335 -------------------------NFYIVDGFKGYCLRKLDILDGYVSTVAGQVDV---------A---SQIDGT---P 374 (409)
T ss_dssp -------------------------CEEEEETTTTCEEEEEETTTTEEEEEEECTTC---------B---SCCCBS---T
T ss_pred -------------------------CEEEEeCCCCCEEEEEECCCCEEEEEeCCCCC---------C---CcCCCC---h
Confidence 5777777 889999999766542211111000 0 000000 0
Q ss_pred ccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEEC
Q 048801 541 LLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 574 (1715)
Q Consensus 541 l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl 574 (1715)
....-.....|+++++|.++++-..++.|+.+++
T Consensus 375 ~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 375 LEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred hceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 1112245788999999988888888888888764
No 239
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.10 E-value=2.1e-09 Score=128.71 Aligned_cols=270 Identities=14% Similarity=0.041 Sum_probs=167.0
Q ss_pred CCeEEEEECCCCCEEEEEe--CCCeeEEEECCCCCceEEE-------eCCCCCeEEEEecCCCCcceEEEEecC-----C
Q 048801 286 GDITDLAVSSNNTLVASAS--NDFVIRVWRLPDGLPISVL-------RGHTGAVTAIAFSPRPSAIYQLLSSSD-----D 351 (1715)
Q Consensus 286 ~~VtsLafSpDg~lLASGS--~DGtIrVWDl~tg~~l~~L-------~gH~~~VtsLafSPdg~~~~~LaSgS~-----D 351 (1715)
..+..|+++++|+++++.. .++.++||.+.++. +..+ .+|-..+.+|+|.+++. ++++-.. +
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~---L~v~D~g~~~~~~ 92 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGI---VWMLDNGNQSKSV 92 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSE---EEEEECHHHHTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCc---EEEEcCCCCcCCC
Confidence 6789999999999988864 23436677665554 2222 13456799999999875 3343322 5
Q ss_pred CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC-CCeEEEec---CCCeEEEEeCC
Q 048801 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN-GTVFVTGS---SDTFARVWSAC 427 (1715)
Q Consensus 352 GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd-G~~LatGs---~DG~IrVWDl~ 427 (1715)
+.|.+||+.+++.+..+.++... ..+...+..++++++ +..+++.. .++.|.+||+.
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~-------------------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~ 153 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPI-------------------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ 153 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTT-------------------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT
T ss_pred CeEEEEECCCCeEEEEEECChhh-------------------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC
Confidence 78999999988866655443211 011234678999976 44555554 57899999997
Q ss_pred CCCccCCCCCceeeeeecCCCCCee-EEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCC
Q 048801 428 KSSVEDSEQPIHELDVLSGHENDVN-YVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 506 (1715)
Q Consensus 428 t~~~~~~~~~~~~l~~l~gH~~~V~-sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~ 506 (1715)
+++. ...+.+|..... ...+..++ ..+.+.+.+|.+..|.
T Consensus 154 ~g~~---------~r~~~~~~~~~~~~~~~~~~g--------------------------~~~~~~~~~g~~~~~~---- 194 (343)
T 2qe8_A 154 TGLA---------ARVLQGYPGIAPEDIDLVIDG--------------------------VPVQIGQPDGTVIRPH---- 194 (343)
T ss_dssp TCCE---------EEECTTCTTTSCCSCCCEETT--------------------------EECBEECTTSCEECCC----
T ss_pred CCCE---------EEEecCCCcccccccceeECC--------------------------EEEEeccCCCceecee----
Confidence 6532 233333321100 01111111 3444555666655442
Q ss_pred ccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC-eEEEEECC---CCc----
Q 048801 507 RSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWNAV---DGS---- 578 (1715)
Q Consensus 507 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG-tI~IWDl~---sg~---- 578 (1715)
..+..|+|+|||++|+++...+ .|+.++.. .+.
T Consensus 195 ---------------------------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~ 235 (343)
T 2qe8_A 195 ---------------------------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDA 235 (343)
T ss_dssp ---------------------------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHH
T ss_pred ---------------------------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChh
Confidence 1357899999999888887766 55555532 111
Q ss_pred -eE--EEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcc-cceEEEEEEcCCCCEEEEEeCCCeE
Q 048801 579 -LV--HSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIG-RFKLVDGKFSPDGTSIVLSDDVGQI 654 (1715)
Q Consensus 579 -~l--~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h-~~~V~svafSPDG~~LAsgs~DG~I 654 (1715)
.. ....++.+....+++++ ++.++++...++.|.+||..+|+........ -..+.+++|.++|.++++....+.+
T Consensus 236 ~~~~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 236 ELGSKIERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp HHHTTCEEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred hhhcceEecccCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 00 01223444556789999 6788888888999999998667654433322 2357899999999887777654444
Q ss_pred EEE
Q 048801 655 YLL 657 (1715)
Q Consensus 655 ~IW 657 (1715)
.+|
T Consensus 315 ~~f 317 (343)
T 2qe8_A 315 APL 317 (343)
T ss_dssp GGG
T ss_pred ccc
Confidence 333
No 240
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.09 E-value=4.7e-09 Score=137.55 Aligned_cols=352 Identities=10% Similarity=0.060 Sum_probs=201.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCC-----------eEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLASCRGHEGD-----------ITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL 323 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~-----------VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L 323 (1715)
+..|++++.++.|..+|..+|+.+-.+...... ...+++ ++..|++++.|+.|..+|..+|+.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 557777778899999999999999887643210 112333 4668888899999999999999999888
Q ss_pred eCC-C----CCeEE-EEecCCCCcceEEEEecC------CCcEEEEecCCCCCcceecCCCCCC-Ccc-------CccCC
Q 048801 324 RGH-T----GAVTA-IAFSPRPSAIYQLLSSSD------DGTCRIWDARYSQYSPRIYLPKPPD-AIT-------GKSNV 383 (1715)
Q Consensus 324 ~gH-~----~~Vts-LafSPdg~~~~~LaSgS~------DGtVrIWDl~tg~~l~~i~~~~~~~-~i~-------g~~~~ 383 (1715)
..+ . ..+.+ ..+. ++ .++.++. +|.|+.||..+|+.+..+....... ... +....
T Consensus 155 ~~~~~~~~~~~~~~~p~v~-~~----~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRVF-KG----KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp ETTTTCCSSCBCCSCCEEE-TT----EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred cCCcCcCcCcccccCcEEE-CC----EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 754 2 12221 1111 22 3444442 7999999999999887765432211 000 00000
Q ss_pred CCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCC-------------------eEEEEeCCCCCccCCCCCceeeeee
Q 048801 384 PSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDT-------------------FARVWSACKSSVEDSEQPIHELDVL 444 (1715)
Q Consensus 384 ~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG-------------------~IrVWDl~t~~~~~~~~~~~~l~~l 444 (1715)
. .................+++++++.+|++++.++ .|..+|..+++.... ...
T Consensus 230 ~-~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~-------~~~ 301 (677)
T 1kb0_A 230 D-PSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWH-------YQE 301 (677)
T ss_dssp C-GGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEE-------EES
T ss_pred c-ccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEE-------Eec
Confidence 0 0000000001112234678899888888887664 488888877653111 011
Q ss_pred cCCCC-------CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccc----
Q 048801 445 SGHEN-------DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVG---- 513 (1715)
Q Consensus 445 ~gH~~-------~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~---- 513 (1715)
..|.. ....+....++. ....++.++.+|.|.++|..+++.+....
T Consensus 302 ~~~d~wd~~~~~~p~l~~~~~dG~-----------------------~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~ 358 (677)
T 1kb0_A 302 TPGDNWDYTSTQPMILADIKIAGK-----------------------PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPV 358 (677)
T ss_dssp STTCCSCCCCCSCCEEEEEEETTE-----------------------EEEEEEECCTTSEEEEEETTTCCEEEEEESSCC
T ss_pred CCCcccccccCCCcEEEecccCCc-----------------------EeeEEEEECCCCEEEEEECCCCCEecccccccc
Confidence 11210 000111111110 01578899999999999999987653321
Q ss_pred cccccccccCCCCCCCC--CCCCCCCcccccCCC--CCeeEEEeCCCCCEEEEEecC-----------------------
Q 048801 514 RWTRAYHLKVPPPPLPP--QPPRGGPRQRLLPTP--RGVNMIVWSLDNRFVLAAIMD----------------------- 566 (1715)
Q Consensus 514 ~~~~~~~l~~~~~~~~~--~~~~g~~~~~l~~h~--~~VtslafSPDG~~LaTgs~D----------------------- 566 (1715)
.|...+. . ...+... ....+.......... ..-..++|+|++.+|++...+
T Consensus 359 ~~~~~~d-~-~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~ 436 (677)
T 1kb0_A 359 NWASGYD-K-HGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQS 436 (677)
T ss_dssp SSEEEEC-T-TSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTG
T ss_pred CcccccC-C-CCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccc
Confidence 0110000 0 0000000 000000000011111 112357889998888776432
Q ss_pred --------------------CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEE
Q 048801 567 --------------------CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY 626 (1715)
Q Consensus 567 --------------------GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl 626 (1715)
|.|..||+.+|+.+..+... .++....+.. .+.+++.++.||.|++||..+|+.+..+
T Consensus 437 ~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~ 514 (677)
T 1kb0_A 437 GTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEA 514 (677)
T ss_dssp GGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeee
Confidence 78999999999999888633 3344445555 4456677899999999999999999999
Q ss_pred Ecccce-EEEEEEcCCCCEEEEE
Q 048801 627 EIGRFK-LVDGKFSPDGTSIVLS 648 (1715)
Q Consensus 627 ~~h~~~-V~svafSPDG~~LAsg 648 (1715)
..+.+. ..-+.|+.+|+.+++.
T Consensus 515 ~~~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 515 PTGTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp ECSSCCCSCCEEEEETTEEEEEE
T ss_pred eCCCCcccCCEEEEeCCEEEEEE
Confidence 865432 2345677888765543
No 241
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.07 E-value=1.5e-08 Score=133.18 Aligned_cols=352 Identities=12% Similarity=0.085 Sum_probs=201.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCC----------e-EEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLASCRGHEGD----------I-TDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL 323 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~----------V-tsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L 323 (1715)
+..|++++.++.|..+|..+|+.+-.+..+... + ..+++ ++..|++++.|+.|..+|..+|+.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 567788888999999999999999887643221 1 11222 3568888999999999999999998877
Q ss_pred eCC--CCCeEEEEecC---CCCcceEEEEec------CCCcEEEEecCCCCCcceecCCC-CCCCc-cCccC---CCCCC
Q 048801 324 RGH--TGAVTAIAFSP---RPSAIYQLLSSS------DDGTCRIWDARYSQYSPRIYLPK-PPDAI-TGKSN---VPSNN 387 (1715)
Q Consensus 324 ~gH--~~~VtsLafSP---dg~~~~~LaSgS------~DGtVrIWDl~tg~~l~~i~~~~-~~~~i-~g~~~---~~~~~ 387 (1715)
... ......+..+| ++ .++.++ .+|.|..||..+|+.+..+.... ..... ..... .....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g----~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 223 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG----KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWF 223 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT----EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCC
T ss_pred cCcCCCCCCccccCCcEEECC----EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccC
Confidence 642 11111111122 33 344443 37899999999999877664311 11000 00000 00000
Q ss_pred CCCCCC-CCCCcceeEEEEccCCCeEEEecCCCe-------------------EEEEeCCCCCccCCCCCceeeeeecC-
Q 048801 388 GPSSSN-GLQSHQILCCAYNANGTVFVTGSSDTF-------------------ARVWSACKSSVEDSEQPIHELDVLSG- 446 (1715)
Q Consensus 388 ~~~~~~-~~h~~~VtslafSpdG~~LatGs~DG~-------------------IrVWDl~t~~~~~~~~~~~~l~~l~g- 446 (1715)
...... .........+++++++.+|++++.++. |..||..+++. +..+..
T Consensus 224 g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~---------~W~~~~~ 294 (689)
T 1yiq_A 224 GDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEY---------VWHYQTT 294 (689)
T ss_dssp SSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCE---------EEEEESS
T ss_pred CceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCce---------eEeeecC
Confidence 000000 011122246789998888888887764 88999988753 222211
Q ss_pred -CCC-------CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccc----c
Q 048801 447 -HEN-------DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVG----R 514 (1715)
Q Consensus 447 -H~~-------~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~----~ 514 (1715)
|.. .+.......++. ....++.++.+|.+.++|..+++.+.... .
T Consensus 295 ~~d~wd~~~~~~~~l~d~~~~G~-----------------------~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~ 351 (689)
T 1yiq_A 295 PGDAWDYTATQHMILAELPIDGK-----------------------PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQS 351 (689)
T ss_dssp TTCCSCCCCCSCEEEEEEEETTE-----------------------EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS
T ss_pred CcccccccCCCCcEEEeeccCCc-----------------------EEEEEEEECCCCeEEEEECCCCCEeccccccccc
Confidence 210 111001100110 01378899999999999999988652211 1
Q ss_pred ccccccccCCCCCCCCC-----CCCCCCcccccCCC--CCeeEEEeCCCCCEEEEEec----------------------
Q 048801 515 WTRAYHLKVPPPPLPPQ-----PPRGGPRQRLLPTP--RGVNMIVWSLDNRFVLAAIM---------------------- 565 (1715)
Q Consensus 515 ~~~~~~l~~~~~~~~~~-----~~~g~~~~~l~~h~--~~VtslafSPDG~~LaTgs~---------------------- 565 (1715)
|.......... +.... ...+.......... ..-..++|+|+..+|++...
T Consensus 352 w~~~~~~~~~~-pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (689)
T 1yiq_A 352 WTKGMDMKTGR-PILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMY 430 (689)
T ss_dssp SEEEEETTTTE-EEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSC
T ss_pred cccccCccCCC-cccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccccccccc
Confidence 21111000000 00000 00000000011100 11234788888888777532
Q ss_pred -----------------------CCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce
Q 048801 566 -----------------------DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTP 622 (1715)
Q Consensus 566 -----------------------DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~ 622 (1715)
+|.|+.||+.+|+.+..+..+... ..-.+.. .+.+++.|+.||.|+.||..+|+.
T Consensus 431 ~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~-~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~ 508 (689)
T 1yiq_A 431 QLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIF-NGGTLST-AGNLVFEGSADGRVIAYAADTGEK 508 (689)
T ss_dssp CCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSC-CCCEEEE-TTTEEEEECTTSEEEEEETTTCCE
T ss_pred ccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCc-cCccceE-CCCEEEEECCCCcEEEEECCCCcc
Confidence 378999999999999988765432 2334444 456777899999999999999999
Q ss_pred EEEEEcccceE-EEEEEcCCCCEEEE
Q 048801 623 IRIYEIGRFKL-VDGKFSPDGTSIVL 647 (1715)
Q Consensus 623 l~tl~~h~~~V-~svafSPDG~~LAs 647 (1715)
+..+..+.+.+ .-+.|+.||+..++
T Consensus 509 lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 509 LWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp EEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred ceeeeCCCCcccCceEEEECCEEEEE
Confidence 99998654332 34677889886553
No 242
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.04 E-value=5.6e-08 Score=113.71 Aligned_cols=242 Identities=8% Similarity=-0.020 Sum_probs=156.5
Q ss_pred cCCCCCeEEEEECCC-CCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecC
Q 048801 282 RGHEGDITDLAVSSN-NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360 (1715)
Q Consensus 282 ~gHs~~VtsLafSpD-g~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~ 360 (1715)
..+..-.-+..|+++ +.++++...++.|..||..++.. ..+. ....+.++++++++. ++++ . ++.|.+||..
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~---l~v~-~-~~~l~~~d~~ 81 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGG---YVAT-I-GTKFCALNWK 81 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSS---EEEE-E-TTEEEEEETT
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCC---EEEE-E-CCeEEEEECC
Confidence 334445668899995 45666666789999999987764 3333 457899999999987 4444 3 5679999998
Q ss_pred CCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC---------CeEEEEeCCCCCc
Q 048801 361 YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD---------TFARVWSACKSSV 431 (1715)
Q Consensus 361 tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D---------G~IrVWDl~t~~~ 431 (1715)
+++......... ......+..++++++|+++++.... ....||.+....
T Consensus 82 ~g~~~~~~~~~~---------------------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g- 139 (297)
T 3g4e_A 82 EQSAVVLATVDN---------------------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH- 139 (297)
T ss_dssp TTEEEEEEECCT---------------------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-
T ss_pred CCcEEEEEecCC---------------------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-
Confidence 776432211100 0113447899999999977654221 223444443210
Q ss_pred cCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecC--CCccC
Q 048801 432 EDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPR--SRRSH 509 (1715)
Q Consensus 432 ~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~--t~~~~ 509 (1715)
. +..+..+....+.++|+|++ ..++++.+.++.|.+|++. ++...
T Consensus 140 -------~-~~~~~~~~~~pngi~~spdg-------------------------~~lyv~~~~~~~i~~~~~d~~~G~~~ 186 (297)
T 3g4e_A 140 -------H-VKKYFDQVDISNGLDWSLDH-------------------------KIFYYIDSLSYSVDAFDYDLQTGQIS 186 (297)
T ss_dssp -------C-EEEEEEEESBEEEEEECTTS-------------------------CEEEEEEGGGTEEEEEEECTTTCCEE
T ss_pred -------C-EEEEeeccccccceEEcCCC-------------------------CEEEEecCCCCcEEEEeccCCCCccc
Confidence 0 11122233356789999986 2355677778999999874 32210
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCC
Q 048801 510 GKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSAS 589 (1715)
Q Consensus 510 ~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~ 589 (1715)
. ... ...+......+..++++++|++.++...++.|.+||..+|+.+..+..+...
T Consensus 187 ----~-~~~-------------------~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~ 242 (297)
T 3g4e_A 187 ----N-RRS-------------------VYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDK 242 (297)
T ss_dssp ----E-EEE-------------------EEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSB
T ss_pred ----C-cEE-------------------EEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCC
Confidence 0 000 0011112245678999999988888878889999999999999999888788
Q ss_pred eEEEEEc-cCCCcEEEEEeCC
Q 048801 590 SYVLDVH-PFNPRIAMSAGYD 609 (1715)
Q Consensus 590 V~sLafS-P~dg~lLaSgs~D 609 (1715)
+++++|. |+...++++...+
T Consensus 243 ~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 243 TTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp EEEEEEESGGGCEEEEEEBCT
T ss_pred ceEEEEeCCCCCEEEEEcCCc
Confidence 9999998 7555666665543
No 243
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.04 E-value=4.8e-09 Score=127.29 Aligned_cols=282 Identities=10% Similarity=-0.051 Sum_probs=176.2
Q ss_pred cEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEe----------CCCeeEEEECCCCCceEEEeCC-------CC
Q 048801 266 LVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASAS----------NDFVIRVWRLPDGLPISVLRGH-------TG 328 (1715)
Q Consensus 266 tIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS----------~DGtIrVWDl~tg~~l~~L~gH-------~~ 328 (1715)
.|.++|..+++.+.++.....+ .++|+||+++|+++. .++.|.+||+.+++.+..+..+ ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999998766666 799999999998886 3688999999999999998643 12
Q ss_pred CeEEEEecCCCCcceEEEEecC--CCcEEE--EecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEE
Q 048801 329 AVTAIAFSPRPSAIYQLLSSSD--DGTCRI--WDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCA 404 (1715)
Q Consensus 329 ~VtsLafSPdg~~~~~LaSgS~--DGtVrI--WDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsla 404 (1715)
....++|+|+++ +|+++.. +..|.+ +|+.+ +..+..+. |+.
T Consensus 125 ~P~~ia~SpDGk---~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-----------------------------~~~ 169 (368)
T 1mda_H 125 RVHIIGNCASSA---CLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-----------------------------CFH 169 (368)
T ss_dssp CTTSEEECTTSS---CEEEEECSSSCEEEEEETTTEE---EEEEECSS-----------------------------CCC
T ss_pred CcceEEEcCCCC---EEEEEccCCCCeEEEEEEchhh---ceEEECCC-----------------------------ceE
Confidence 456899999998 4555543 467888 99876 23332110 011
Q ss_pred EccCC-CeEEEecCCCeEEEEeCCC-----CCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccccc
Q 048801 405 YNANG-TVFVTGSSDTFARVWSACK-----SSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPK 478 (1715)
Q Consensus 405 fSpdG-~~LatGs~DG~IrVWDl~t-----~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~ 478 (1715)
+.|+| ..+++.+.||.+.+.++.+ ++...... ..+.-...+. . .+++
T Consensus 170 ~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t-----~~i~vg~~P~---~-~~~~------------------ 222 (368)
T 1mda_H 170 IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT-----GAQNCSSQAA---Q-ANYP------------------ 222 (368)
T ss_dssp CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC-----TTSCBCSCCE---E-ETTT------------------
T ss_pred EccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee-----eeeeCCCCcc---c-cccC------------------
Confidence 22333 3445556677777777764 21100000 0000011122 1 2222
Q ss_pred ccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC
Q 048801 479 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR 558 (1715)
Q Consensus 479 ~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~ 558 (1715)
..++..+. +.+.+.|+.+.... ....|. +. ..........+.+...+++++|++
T Consensus 223 --------~~~~~vs~-~~V~viD~~~~~~~-v~~~~~----~~------------~~~~~~~~~~p~g~~~v~~s~dg~ 276 (368)
T 1mda_H 223 --------GMLVWAVA-SSILQGDIPAAGAT-MKAAID----GN------------ESGRKADNFRSAGFQMVAKLKNTD 276 (368)
T ss_dssp --------TEEEECBS-SCCEEEECCSSCCE-EECCCC----SS------------CTHHHHTTEEECSSSCEEEETTTT
T ss_pred --------CEEEEEcC-CEEEEEECCCCcce-EEEEEE----ec------------cccccccccccCcceeeEEcCCCC
Confidence 34445555 88888888642200 000000 00 000000000122233378999999
Q ss_pred EEEEEec-C--------CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEe-CCCcEEEEECCCCceEEEEEc
Q 048801 559 FVLAAIM-D--------CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAG-YDGRTIVWDIWEGTPIRIYEI 628 (1715)
Q Consensus 559 ~LaTgs~-D--------GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs-~DGtI~VWDl~tgk~l~tl~~ 628 (1715)
.++++.. . +.+.++|+.+++.+..+.... ...+|+|+|++.+++++.. .++.|.|+|+.+++.+.++..
T Consensus 277 ~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v 355 (368)
T 1mda_H 277 GIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp EEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred EEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC
Confidence 8887643 2 356699999999998886443 4789999996666888888 699999999999999999985
Q ss_pred ccceEEEEEEc
Q 048801 629 GRFKLVDGKFS 639 (1715)
Q Consensus 629 h~~~V~svafS 639 (1715)
+.. ...+++.
T Consensus 356 g~~-P~~i~~~ 365 (368)
T 1mda_H 356 DKG-PESLSVQ 365 (368)
T ss_dssp CSC-CCEEECC
T ss_pred CCC-CCEEEee
Confidence 543 3344444
No 244
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.03 E-value=8.9e-08 Score=117.91 Aligned_cols=256 Identities=15% Similarity=0.089 Sum_probs=162.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCC--cEEEEecCCCC
Q 048801 286 GDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG--TCRIWDARYSQ 363 (1715)
Q Consensus 286 ~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DG--tVrIWDl~tg~ 363 (1715)
.....|+|+++++++++...++.|++||+.++........... .. ++|++++. .|+++..++ .|.+|+...+.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~---~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQ---RVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSS---EEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCC---cEEEEecCCCceEEEEEcCCCc
Confidence 4678999999999888887789999999988776655554332 33 99999987 677777655 78888876554
Q ss_pred CcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeee
Q 048801 364 YSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV 443 (1715)
Q Consensus 364 ~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~ 443 (1715)
....+.... ......+.+++++|++..|.++..++.|+.|+..++.. ..+..
T Consensus 206 ~~~~~g~~~---------------------~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~-------~~~~~ 257 (409)
T 3hrp_A 206 APTRIGQLG---------------------STFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV-------TLIKQ 257 (409)
T ss_dssp CEEEEEECC---------------------TTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE-------EEEEE
T ss_pred eeEEeeecc---------------------chhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE-------EEEec
Confidence 322210000 00123467899999444444466788999999876431 11100
Q ss_pred --ecCCCCCe--eEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccc
Q 048801 444 --LSGHENDV--NYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAY 519 (1715)
Q Consensus 444 --l~gH~~~V--~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~ 519 (1715)
..++...- ..++|+|++ ..++++...++.|+.|+..... ....+..
T Consensus 258 ~~~~g~~~~~P~~~ia~~p~~-------------------------g~lyv~d~~~~~I~~~~~~g~~-~~~~g~~---- 307 (409)
T 3hrp_A 258 LELSGSLGTNPGPYLIYYFVD-------------------------SNFYMSDQNLSSVYKITPDGEC-EWFCGSA---- 307 (409)
T ss_dssp CCCCSCCCCSSCCEEEEETTT-------------------------TEEEEEETTTTEEEEECTTCCE-EEEEECT----
T ss_pred ccccCCCCCCccccEEEeCCC-------------------------CEEEEEeCCCCEEEEEecCCCE-EEEEeCC----
Confidence 11222222 389999853 2577777788999999876421 0000000
Q ss_pred cccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCceEEEEecC------------
Q 048801 520 HLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGSLVHSLTGH------------ 586 (1715)
Q Consensus 520 ~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~~l~tL~gH------------ 586 (1715)
.... ...+ ......-.....++++++|.++++-. .++.|++|++.++.. .++.++
T Consensus 308 ----~~~g----~~dg---~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~ 375 (409)
T 3hrp_A 308 ----TQKT----VQDG---LREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPL 375 (409)
T ss_dssp ----TCCS----CBCE---EGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTT
T ss_pred ----CCCC----cCCC---cccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChh
Confidence 0000 0000 00111123478899999999888777 889999999878764 444444
Q ss_pred ---CCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 587 ---SASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 587 ---~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
-.....|++++ ++.++++-..+++|+.+++
T Consensus 376 ~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 376 EATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred ceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 23578999999 5788888888888888765
No 245
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.03 E-value=6.5e-08 Score=113.19 Aligned_cols=231 Identities=12% Similarity=0.106 Sum_probs=151.4
Q ss_pred CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEE
Q 048801 326 HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAY 405 (1715)
Q Consensus 326 H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtslaf 405 (1715)
+..-.-+..|++++.. ++++...++.|..||..++... .+.. ...+.++++
T Consensus 11 ~~~~~Egp~w~~~~~~--l~~~d~~~~~i~~~d~~~~~~~-~~~~--------------------------~~~~~~i~~ 61 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNS--LLFVDIPAKKVCRWDSFTKQVQ-RVTM--------------------------DAPVSSVAL 61 (297)
T ss_dssp CCSBEEEEEEETTTTE--EEEEETTTTEEEEEETTTCCEE-EEEC--------------------------SSCEEEEEE
T ss_pred CCccccCCeEECCCCE--EEEEECCCCEEEEEECCCCcEE-EEeC--------------------------CCceEEEEE
Confidence 3445568899997653 5677778899999998876531 1111 234889999
Q ss_pred ccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecC--CCCCeeEEEEccCcccccccccccccccccccccCCc
Q 048801 406 NANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSG--HENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSW 483 (1715)
Q Consensus 406 SpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~g--H~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~ 483 (1715)
+++|+++++. ++.|.+||..+++. ..+..... ....++.+++++++
T Consensus 62 ~~dG~l~v~~--~~~l~~~d~~~g~~-------~~~~~~~~~~~~~~~~di~~d~dG----------------------- 109 (297)
T 3g4e_A 62 RQSGGYVATI--GTKFCALNWKEQSA-------VVLATVDNDKKNNRFNDGKVDPAG----------------------- 109 (297)
T ss_dssp BTTSSEEEEE--TTEEEEEETTTTEE-------EEEEECCTTCSSEEEEEEEECTTS-----------------------
T ss_pred CCCCCEEEEE--CCeEEEEECCCCcE-------EEEEecCCCCCCCCCCCEEECCCC-----------------------
Confidence 9999965553 56799999876532 11111111 12347788888876
Q ss_pred ccCceEEEEcC---------CCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC
Q 048801 484 FCHDNIVTCSR---------DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS 554 (1715)
Q Consensus 484 ~~~~~LaSgS~---------DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS 554 (1715)
.++++... .....||.+.... ....+.......+.++|+
T Consensus 110 ---~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-----------------------------~~~~~~~~~~~pngi~~s 157 (297)
T 3g4e_A 110 ---RYFAGTMAEETAPAVLERHQGALYSLFPDH-----------------------------HVKKYFDQVDISNGLDWS 157 (297)
T ss_dssp ---CEEEEEEECCSBTTBCCTTCEEEEEECTTS-----------------------------CEEEEEEEESBEEEEEEC
T ss_pred ---CEEEecCCcccccccccCCCcEEEEEECCC-----------------------------CEEEEeeccccccceEEc
Confidence 34443321 1223444333210 001111122345789999
Q ss_pred CCCCEEEE-EecCCeEEEEEC--CCCceE-----EEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEE
Q 048801 555 LDNRFVLA-AIMDCRICVWNA--VDGSLV-----HSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY 626 (1715)
Q Consensus 555 PDG~~LaT-gs~DGtI~IWDl--~sg~~l-----~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl 626 (1715)
||++.|+. .+.++.|.+|++ .+|.+. ..+..+.+....+++.+ ++++.++...++.|.+||..+|+.+..+
T Consensus 158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~~~~i 236 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKRLQTV 236 (297)
T ss_dssp TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCEEEEE
T ss_pred CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceEEEEE
Confidence 99987754 555789999987 456532 22333445678999999 5678777777889999999999999999
Q ss_pred EcccceEEEEEEc-CCCCEEEEEeC
Q 048801 627 EIGRFKLVDGKFS-PDGTSIVLSDD 650 (1715)
Q Consensus 627 ~~h~~~V~svafS-PDG~~LAsgs~ 650 (1715)
..+...+++++|. ||++.|.+++.
T Consensus 237 ~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 237 KLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp ECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred ECCCCCceEEEEeCCCCCEEEEEcC
Confidence 8776789999998 89988876654
No 246
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.02 E-value=1.3e-08 Score=121.94 Aligned_cols=285 Identities=9% Similarity=0.003 Sum_probs=173.4
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCcEEEEe-------cCCCCCeEEEEECCCCCEEEEE
Q 048801 233 MQNIKKLRGHRDAVYCAIFDRSGRFVITGS--DDRLVKIWSMETAFCLASC-------RGHEGDITDLAVSSNNTLVASA 303 (1715)
Q Consensus 233 ~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS--~DGtIrIWDl~tgk~l~tL-------~gHs~~VtsLafSpDg~lLASG 303 (1715)
++.+..+. ..+..|+++++|+++++.. .++.++||.+.+++.. .+ .+|...+.+|+|+++++++++.
T Consensus 9 ~~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D 84 (343)
T 2qe8_A 9 LEVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLD 84 (343)
T ss_dssp CEEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEE
T ss_pred eEEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEc
Confidence 34455544 7899999999999998864 2343666666556433 22 2355789999999999877665
Q ss_pred eC-----CCeeEEEECCCCCceEEEeCC------CCCeEEEEecCCCCcceEEEEec---CCCcEEEEecCCCCCcceec
Q 048801 304 SN-----DFVIRVWRLPDGLPISVLRGH------TGAVTAIAFSPRPSAIYQLLSSS---DDGTCRIWDARYSQYSPRIY 369 (1715)
Q Consensus 304 S~-----DGtIrVWDl~tg~~l~~L~gH------~~~VtsLafSPdg~~~~~LaSgS---~DGtVrIWDl~tg~~l~~i~ 369 (1715)
.. ++.|.+||+.+++.+..+... ...+..+++.+++.. .+++.. .++.|.+||+.+++....+.
T Consensus 85 ~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~--~yvtd~~~~~~~~i~v~d~~~g~~~r~~~ 162 (343)
T 2qe8_A 85 NGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNF--VYISDPAPDDKAALIRVDLQTGLAARVLQ 162 (343)
T ss_dssp CHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTE--EEEEECCSGGGCEEEEEETTTCCEEEECT
T ss_pred CCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCE--EEEEcCccCCCCeEEEEECCCCCEEEEec
Confidence 43 578999999999877766532 235689999986552 445544 67899999998776433221
Q ss_pred CCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC
Q 048801 370 LPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN 449 (1715)
Q Consensus 370 ~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~ 449 (1715)
. .... .... ..+.++|..|.+++.+|.+..|..
T Consensus 163 ~--~~~~-------------------~~~~---~~~~~~g~~~~~~~~~g~~~~~~~----------------------- 195 (343)
T 2qe8_A 163 G--YPGI-------------------APED---IDLVIDGVPVQIGQPDGTVIRPHL----------------------- 195 (343)
T ss_dssp T--CTTT-------------------SCCS---CCCEETTEECBEECTTSCEECCCC-----------------------
T ss_pred C--CCcc-------------------cccc---cceeECCEEEEeccCCCceeceec-----------------------
Confidence 0 0000 0000 223346666666666666654421
Q ss_pred CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC-eEEEEecCCCccCcccccccccccccCCCCCC
Q 048801 450 DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG-SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPL 528 (1715)
Q Consensus 450 ~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG-sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~ 528 (1715)
.++.|+|+|++ ..|+.+..++ .|..++...... ..... ....
T Consensus 196 ~~~gia~s~dg--------------------------~~ly~~~~~~~~l~~~~~~~~~~-~~~~~--~~~~-------- 238 (343)
T 2qe8_A 196 GVNGIVLDAEN--------------------------EWLYLSPMHSTSMYRIKSADLSN-LQLTD--AELG-------- 238 (343)
T ss_dssp CEEEEEECTTS--------------------------CEEEEEESSCSEEEEEEHHHHTC-TTCCH--HHHH--------
T ss_pred ccceeEeccCC--------------------------CEEEEEeCCCCeEEEEEHHHhcC-CCCCh--hhhh--------
Confidence 35678999876 4566655554 444443221000 00000 0000
Q ss_pred CCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec-CCCCeEEEEEccCCCcEEEEEe
Q 048801 529 PPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG-HSASSYVLDVHPFNPRIAMSAG 607 (1715)
Q Consensus 529 ~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g-H~~~V~sLafSP~dg~lLaSgs 607 (1715)
......++......++++++|.++++...++.|.+||..+|+....... +...+.+++|.+ ++.++++.+
T Consensus 239 --------~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~-~g~l~v~~~ 309 (343)
T 2qe8_A 239 --------SKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGS-DGYLYFDCN 309 (343)
T ss_dssp --------TTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECT-TSCEEEEEC
T ss_pred --------cceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECC-CCcEEEEeC
Confidence 0000111223456789999999999988899999999866765443332 245688999998 567777776
Q ss_pred CCCcEEEEE
Q 048801 608 YDGRTIVWD 616 (1715)
Q Consensus 608 ~DGtI~VWD 616 (1715)
..+.+.+|.
T Consensus 310 ~~~~~~~f~ 318 (343)
T 2qe8_A 310 QLHHSAPLN 318 (343)
T ss_dssp CGGGSGGGB
T ss_pred ccccccccc
Confidence 555554443
No 247
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.02 E-value=2.4e-10 Score=125.37 Aligned_cols=104 Identities=16% Similarity=0.206 Sum_probs=90.2
Q ss_pred CCChHHHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhh--hhhhhHHHHHHHHHHHH
Q 048801 1607 EIDSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVN--NYYRSLEAAKDDINVML 1684 (1715)
Q Consensus 1607 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n--~~Yr~~~~~~~d~~~~~ 1684 (1715)
.+.+..+.++...|..|... +....|..++.. ..++|...+..||||+||++||++ ..|++++++..||++|+
T Consensus 77 ~l~~~~~~~c~~il~~l~~~----~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~ 151 (184)
T 3o36_A 77 KLTPIDKRKCERLLLFLYCH----EMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIF 151 (184)
T ss_dssp CCCHHHHHHHHHHHHHHHHS----TTCHHHHSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhc----hhhhhhcccccc-CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 46777888888888887653 455566666653 479999999999999999999998 57999999999999999
Q ss_pred hhhhhccCCChHHHHHHHHHHHHHHHHhhcC
Q 048801 1685 SNAESYFIKNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1685 ~Na~~~n~~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
+||.+||.++++|..+|+.|.+.|.+.+.+|
T Consensus 152 ~Na~~yN~~~s~v~~~a~~L~~~f~~~~~~~ 182 (184)
T 3o36_A 152 QNCAEFNEPDSEVANAGIKLENYFEELLKNL 182 (184)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988753
No 248
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.99 E-value=2.7e-09 Score=125.28 Aligned_cols=301 Identities=14% Similarity=0.119 Sum_probs=186.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCC
Q 048801 248 CAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHT 327 (1715)
Q Consensus 248 ~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~ 327 (1715)
++.++.+| .|..++.++.|..|| .+++.+..+..+...+.++.+.++|.++ .++.+ |..+|. +++.+..+....
T Consensus 24 ~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~--l~~~d~-~g~~~~~~~~~~ 97 (330)
T 3hxj_A 24 SPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIY-FGSDK--VYAINP-DGTEKWRFDTKK 97 (330)
T ss_dssp CCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEEC-CSSCE--EEEECC-CGGGGGGSCC--
T ss_pred CceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEE-EecCc--EEEECC-CCcEEEEEECCC
Confidence 34455666 456677788999999 8888876665555566788887777544 44444 888885 666544433222
Q ss_pred CCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc
Q 048801 328 GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA 407 (1715)
Q Consensus 328 ~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp 407 (1715)
.......+. ++ .|..++.++.|..+|.. ++........ ...+.++...+
T Consensus 98 ~~~~~~~~~-~~----~l~v~t~~~~l~~~d~~-g~~~~~~~~~-------------------------~~~~~~~~~~~ 146 (330)
T 3hxj_A 98 AIVSDFTIF-ED----ILYVTSMDGHLYAINTD-GTEKWRFKTK-------------------------KAIYATPIVSE 146 (330)
T ss_dssp ---CCEEEE-TT----EEEEECTTSEEEEECTT-SCEEEEEECS-------------------------SCCCSCCEECT
T ss_pred CcccCceEE-CC----EEEEEecCCEEEEEcCC-CCEEEEEcCC-------------------------CceeeeeEEcC
Confidence 222333333 33 67888888999999987 6544333211 11244556666
Q ss_pred CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCc
Q 048801 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHD 487 (1715)
Q Consensus 408 dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~ 487 (1715)
+|. |.+|+.++.|..||.. ++. +..+......+.++.+.++ .
T Consensus 147 ~g~-l~vgt~~~~l~~~d~~-g~~---------~~~~~~~~~~~~~~~~d~~---------------------------g 188 (330)
T 3hxj_A 147 DGT-IYVGSNDNYLYAINPD-GTE---------KWRFKTNDAITSAASIGKD---------------------------G 188 (330)
T ss_dssp TSC-EEEECTTSEEEEECTT-SCE---------EEEEECSSCCCSCCEECTT---------------------------C
T ss_pred CCE-EEEEcCCCEEEEECCC-CCE---------eEEEecCCCceeeeEEcCC---------------------------C
Confidence 776 5556778999999986 421 2222223334445555443 2
Q ss_pred eEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC
Q 048801 488 NIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC 567 (1715)
Q Consensus 488 ~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG 567 (1715)
.|..++ +.|..+| .++... |. .......+.++++.++|.+ .+++.++
T Consensus 189 ~l~v~t--~~l~~~d-~~g~~~-----~~------------------------~~~~~~~~~~~~~~~~g~l-~v~t~~~ 235 (330)
T 3hxj_A 189 TIYFGS--DKVYAIN-PDGTEK-----WN------------------------FYAGYWTVTRPAISEDGTI-YVTSLDG 235 (330)
T ss_dssp CEEEES--SSEEEEC-TTSCEE-----EE------------------------ECCSSCCCSCCEECTTSCE-EEEETTT
T ss_pred EEEEEe--CEEEEEC-CCCcEE-----EE------------------------EccCCcceeceEECCCCeE-EEEcCCC
Confidence 455555 7888888 443211 11 1111234677788888754 4566778
Q ss_pred eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEE
Q 048801 568 RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVL 647 (1715)
Q Consensus 568 tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAs 647 (1715)
.|..++ .++..+..+......+.++.+.+ ++. |..++.+|.|..+|. +++.+..+......+.++...++|. |.+
T Consensus 236 gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~-~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~ 310 (330)
T 3hxj_A 236 HLYAIN-PDGTEKWRFKTGKRIESSPVIGN-TDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYF 310 (330)
T ss_dssp EEEEEC-TTSCEEEEEECSSCCCSCCEECT-TSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEE
T ss_pred eEEEEC-CCCCEeEEeeCCCCccccceEcC-CCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEE
Confidence 888887 46777777765544445566654 444 445778888999996 7888887775555566777878887 556
Q ss_pred EeCCCeEEEEECCC
Q 048801 648 SDDVGQIYLLNTGQ 661 (1715)
Q Consensus 648 gs~DG~I~IWdl~t 661 (1715)
++.+|.+++.....
T Consensus 311 gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 311 GTRNGKFYALFNLE 324 (330)
T ss_dssp ECTTSCEEEEEC--
T ss_pred EcCCCeEEEEeccc
Confidence 88889999887643
No 249
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.99 E-value=5.2e-09 Score=127.55 Aligned_cols=168 Identities=7% Similarity=-0.035 Sum_probs=129.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---------EEE-EecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEEC
Q 048801 245 AVYCAIFDRSGRFVITGSDDRLVKIWSMETAF---------CLA-SCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRL 314 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk---------~l~-tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl 314 (1715)
.++.+++++...+|++|+.++ ++||++.+.. ... ....+.+ |+.|+| |+.+|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 689999999999999999985 5569875443 111 1223566 999999 99999999 8899999999
Q ss_pred CCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 315 PDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 315 ~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
.+......+..|...|.++.+.+. .+++++.||.|.+||+.++....
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p-----~~av~~~dG~L~v~dl~~~~~~~---------------------------- 160 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNN-----TLVILNSVNDLSALDLRTKSTKQ---------------------------- 160 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS-----EEEEEETTSEEEEEETTTCCEEE----------------------------
T ss_pred hhhhccCccceeecceeeEEecCC-----CEEEEECCCCEEEEEccCCcccc----------------------------
Confidence 888777777788888998887764 37888999999999998765421
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee------c---CCCCCeeEEEEccCc
Q 048801 395 LQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL------S---GHENDVNYVQFSGCA 460 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l------~---gH~~~V~sLafspdg 460 (1715)
....|+|++|+|+| ++.|..||.+++|+.....+ .....+ . +|...|.+|.|.+++
T Consensus 161 -~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~-------~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~ 225 (388)
T 1xip_A 161 -LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEM-------EKQFEFSLPSELEELPVEEYSPLSVTILSPQ 225 (388)
T ss_dssp -EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEE-------EEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred -ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccc-------cccceecCCcccccccCCCeeEEEEEEecCC
Confidence 13459999999999 67888999999998865421 001122 2 477899999999875
No 250
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=98.99 E-value=4e-10 Score=116.41 Aligned_cols=100 Identities=14% Similarity=0.190 Sum_probs=83.2
Q ss_pred HHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCC
Q 048801 1614 DKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIK 1693 (1715)
Q Consensus 1614 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~ 1693 (1715)
+.|...+..+.......+....|..+++....++|...+..|||++||++||+++.|++++++..||++|++||.+||.+
T Consensus 9 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 88 (130)
T 3dai_A 9 RELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPD 88 (130)
T ss_dssp HHHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHcCCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 33444444444444455667788888887788999999999999999999999999999999999999999999999999
Q ss_pred ChH----HHHHHHHHHHHHHHHhh
Q 048801 1694 NAA----LSAKVERLRDWFNRTLN 1713 (1715)
Q Consensus 1694 ~~~----i~~~~~~l~~~~~~~i~ 1713 (1715)
++. |..+|..|.+.+...|.
T Consensus 89 ~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 89 RDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHH
Confidence 874 47888999998888774
No 251
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.94 E-value=5.9e-10 Score=122.39 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=82.9
Q ss_pred CCChHHHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCC--CCCCHHHHHHHhhhh---hhhhHHHHHHHHH
Q 048801 1607 EIDSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFP--VPLYPEVIRLRLVNN---YYRSLEAAKDDIN 1681 (1715)
Q Consensus 1607 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~i~~Rl~n~---~Yr~~~~~~~d~~ 1681 (1715)
.+.+..+.++...|.+|.. ++....|.++++ ++|...+. .||||+|||+||+++ +|+++++++.||+
T Consensus 72 ~m~~~~~~~c~~iL~~l~~----~~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~ 143 (189)
T 2ro1_A 72 KLSPANQRKCERVLLALFC----HEPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVG 143 (189)
T ss_dssp SSCHHHHHHHHHHHHHHHH----STTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhccc----CccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHH
Confidence 5677777777777777654 245556666654 66777776 699999999999999 9999999999999
Q ss_pred HHHhhhhhccCCChHHHHHHHHHHHHHHHHhhc
Q 048801 1682 VMLSNAESYFIKNAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1682 ~~~~Na~~~n~~~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
+|++||++|| +++.++.+|+.|.+.|.+.+.+
T Consensus 144 Lif~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~ 175 (189)
T 2ro1_A 144 RMFKQFNKLT-EDKADVQSIIGLQRFFETRMNE 175 (189)
T ss_dssp HHHHHHHHHC-CSSCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 6888999999999999998865
No 252
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.94 E-value=1e-07 Score=111.90 Aligned_cols=234 Identities=9% Similarity=0.022 Sum_probs=148.9
Q ss_pred eEEEEcCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE
Q 048801 235 NIKKLRGHRDAVYCAIFDRSGR-FVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR 313 (1715)
Q Consensus 235 ~l~~L~GH~~~Vt~VafSpDG~-~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD 313 (1715)
.+..|..+.......+|+++|+ +++++..++.|..|+. ++. +..+..+...+..++++++|+++++...++.|.+|+
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSD 113 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEEC
Confidence 3445556667788999999998 5667777899999998 454 345555677899999999999777766668899999
Q ss_pred CCCCCceEEEeCC-----CCCeEEEEecCCCCcceEEEE----ecC-------------CCcEEEEecCCCCCcceecCC
Q 048801 314 LPDGLPISVLRGH-----TGAVTAIAFSPRPSAIYQLLS----SSD-------------DGTCRIWDARYSQYSPRIYLP 371 (1715)
Q Consensus 314 l~tg~~l~~L~gH-----~~~VtsLafSPdg~~~~~LaS----gS~-------------DGtVrIWDl~tg~~l~~i~~~ 371 (1715)
.. +.. ..+..+ ...+.++++.+++. ++++ |.. .+.|..||..+++.....
T Consensus 114 ~~-g~~-~~~~~~~~~~~~~~~~~i~~d~dG~---l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--- 185 (305)
T 3dr2_A 114 AD-GQA-HLLVGRYAGKRLNSPNDLIVARDGA---IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--- 185 (305)
T ss_dssp TT-SCE-EEEECEETTEECSCCCCEEECTTSC---EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---
T ss_pred CC-CCE-EEEEeccCCCccCCCCCEEECCCCC---EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---
Confidence 75 553 333221 13467899999986 5554 332 245677776555432211
Q ss_pred CCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC------CeEEEEeCCCCCccCCCCCceeeeee-
Q 048801 372 KPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD------TFARVWSACKSSVEDSEQPIHELDVL- 444 (1715)
Q Consensus 372 ~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D------G~IrVWDl~t~~~~~~~~~~~~l~~l- 444 (1715)
.......++|+|+|+.|+++... +.|.+|++....+ .....+
T Consensus 186 ------------------------~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l-------~~~~~~~ 234 (305)
T 3dr2_A 186 ------------------------DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL-------HDRRHFA 234 (305)
T ss_dssp ------------------------EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE-------EEEEEEE
T ss_pred ------------------------cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc-------cCCeEEE
Confidence 01235689999999977776554 6899999864310 001111
Q ss_pred cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCC
Q 048801 445 SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVP 524 (1715)
Q Consensus 445 ~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~ 524 (1715)
.........+++.+++ + |.++..+ .|.+|+... +.
T Consensus 235 ~~~~~~pdgi~~d~~G--------------------------~-lwv~~~~-gv~~~~~~g-~~---------------- 269 (305)
T 3dr2_A 235 SVPDGLPDGFCVDRGG--------------------------W-LWSSSGT-GVCVFDSDG-QL---------------- 269 (305)
T ss_dssp CCSSSCCCSEEECTTS--------------------------C-EEECCSS-EEEEECTTS-CE----------------
T ss_pred ECCCCCCCeEEECCCC--------------------------C-EEEecCC-cEEEECCCC-CE----------------
Confidence 1122334456666654 3 4444444 488888742 21
Q ss_pred CCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCe
Q 048801 525 PPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCR 568 (1715)
Q Consensus 525 ~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGt 568 (1715)
...+.. ...+..++|+++++.|++++.++.
T Consensus 270 -------------~~~~~~-~~~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 270 -------------LGHIPT-PGTASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp -------------EEEEEC-SSCCCEEEECTTSCEEEEEETTEE
T ss_pred -------------EEEEEC-CCceeEEEEeCCCCEEEEEcCCeE
Confidence 111111 124788999999998888887643
No 253
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.94 E-value=2.8e-08 Score=130.56 Aligned_cols=246 Identities=11% Similarity=0.008 Sum_probs=159.3
Q ss_pred CCCCeEEEEecCCCCcceEEE-----EecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcce
Q 048801 326 HTGAVTAIAFSPRPSAIYQLL-----SSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQI 400 (1715)
Q Consensus 326 H~~~VtsLafSPdg~~~~~La-----SgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~V 400 (1715)
|...+..++|||+++ +|+ .|+....|++||+.+++.+... . .....
T Consensus 127 ~~~~l~~~~~SpDg~---~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~-------------------------~~~k~ 177 (693)
T 3iuj_A 127 GTTALDQLSFSRDGR---ILAYSLSLAGSDWREIHLMDVESKQPLETP-L-------------------------KDVKF 177 (693)
T ss_dssp SCCEEEEEEECTTSS---EEEEEEECSSCCEEEEEEEETTTCSEEEEE-E-------------------------EEEES
T ss_pred CcEEEEEEEECCCCC---EEEEEEecCCCceEEEEEEECCCCCCCccc-c-------------------------CCcee
Confidence 445688899999998 444 2333468999999988753321 0 01113
Q ss_pred eEEEEccCCCeEEEecCCC-------------eEEEEeCCCCCccCCCCCceeeeeecC-CCCCeeEEEEccCccccccc
Q 048801 401 LCCAYNANGTVFVTGSSDT-------------FARVWSACKSSVEDSEQPIHELDVLSG-HENDVNYVQFSGCAVASRSA 466 (1715)
Q Consensus 401 tslafSpdG~~LatGs~DG-------------~IrVWDl~t~~~~~~~~~~~~l~~l~g-H~~~V~sLafspdg~as~~~ 466 (1715)
..++|+ ||+.|+.++.+. .|++|++.+... ....+..... |...+..+.|+|++
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~-----~~~~v~~~~~~~~~~~~~~~~SpDg------ 245 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQE-----DDRLVFGAIPAQHHRYVGATVTEDD------ 245 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGG-----GCEEEESCSGGGCCSEEEEEECTTS------
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcc-----cceEEEecCCCCCeEEEEEEEcCCC------
Confidence 567899 999888887764 399999876421 0122333333 44557789999987
Q ss_pred ccccccccccccccCCcccCceE-EEEcC---CCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccccc
Q 048801 467 MSDAFKEENVPKFKNSWFCHDNI-VTCSR---DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLL 542 (1715)
Q Consensus 467 ~~~~~~~~~~~~~~~s~~~~~~L-aSgS~---DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~ 542 (1715)
+.| ++.+. ...|.++|+.++. .....+.
T Consensus 246 --------------------~~l~~~~~~~~~~~~i~~~d~~~~~----------------------------~~~~~l~ 277 (693)
T 3iuj_A 246 --------------------RFLLISAANSTSGNRLYVKDLSQEN----------------------------APLLTVQ 277 (693)
T ss_dssp --------------------CEEEEEEESSSSCCEEEEEETTSTT----------------------------CCCEEEE
T ss_pred --------------------CEEEEEEccCCCCcEEEEEECCCCC----------------------------CceEEEe
Confidence 344 44332 3578888887532 0112233
Q ss_pred CCCCCeeEEEeCCCCCEEEEEec----CCeEEEEECCCCce--EEEEecCCCCeEEEEEccCCCcEEEEEeCCC--cEEE
Q 048801 543 PTPRGVNMIVWSLDNRFVLAAIM----DCRICVWNAVDGSL--VHSLTGHSASSYVLDVHPFNPRIAMSAGYDG--RTIV 614 (1715)
Q Consensus 543 ~h~~~VtslafSPDG~~LaTgs~----DGtI~IWDl~sg~~--l~tL~gH~~~V~sLafSP~dg~lLaSgs~DG--tI~V 614 (1715)
.+....... |+++|..|+..+. .+.|.++++.++.. ...+..|...+. .|++++..++++...+| .|++
T Consensus 278 ~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~ 354 (693)
T 3iuj_A 278 GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQ 354 (693)
T ss_dssp CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEE
Confidence 333344444 6677766655443 36899999988764 456777777665 88886666766666666 6889
Q ss_pred EECCCCceEEEEEc-ccceEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCcc
Q 048801 615 WDIWEGTPIRIYEI-GRFKLVDGKFSPDGTSIVLSDDV----GQIYLLNTGQGES 664 (1715)
Q Consensus 615 WDl~tgk~l~tl~~-h~~~V~svafSPDG~~LAsgs~D----G~I~IWdl~tGe~ 664 (1715)
|++..+ ....+.. +.+.+..+.+++++..|+....+ +.|+.||+.+++.
T Consensus 355 ~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 355 FDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp ECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 998744 4454442 34567788889999888866554 8999999988754
No 254
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.93 E-value=3.1e-08 Score=130.23 Aligned_cols=250 Identities=12% Similarity=0.099 Sum_probs=155.5
Q ss_pred CCCCCeEEEEECCCCCEEEEEe-----CCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCC-----
Q 048801 283 GHEGDITDLAVSSNNTLVASAS-----NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG----- 352 (1715)
Q Consensus 283 gHs~~VtsLafSpDg~lLASGS-----~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DG----- 352 (1715)
+|...|..++|||||++||.+. ....|+|||+.+|+.+.... +......++|+ |++ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~---~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNE---GFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTT---EEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCC---EEEEEEecCccccc
Confidence 3556788999999999988543 23579999999998654311 11113578899 987 566666553
Q ss_pred --------cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCC-CCcceeEEEEccCCCeEEEec----CCC
Q 048801 353 --------TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL-QSHQILCCAYNANGTVFVTGS----SDT 419 (1715)
Q Consensus 353 --------tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~-h~~~VtslafSpdG~~LatGs----~DG 419 (1715)
.|++|++.++......... ... +...+..+.|+|||++|+... ...
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~---------------------~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 259 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFG---------------------AIPAQHHRYVGATVTEDDRFLLISAANSTSGN 259 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEES---------------------CSGGGCCSEEEEEECTTSCEEEEEEESSSSCC
T ss_pred ccccCCCcEEEEEECCCCcccceEEEe---------------------cCCCCCeEEEEEEEcCCCCEEEEEEccCCCCc
Confidence 3889998776532221110 011 123367899999999886543 235
Q ss_pred eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC---C
Q 048801 420 FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD---G 496 (1715)
Q Consensus 420 ~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D---G 496 (1715)
.|+++++.++. .....+..+....... +++++ ..++++...+ +
T Consensus 260 ~i~~~d~~~~~--------~~~~~l~~~~~~~~~~-~~~~g-------------------------~~l~~~t~~~~~~~ 305 (693)
T 3iuj_A 260 RLYVKDLSQEN--------APLLTVQGDLDADVSL-VDNKG-------------------------STLYLLTNRDAPNR 305 (693)
T ss_dssp EEEEEETTSTT--------CCCEEEECSSSSCEEE-EEEET-------------------------TEEEEEECTTCTTC
T ss_pred EEEEEECCCCC--------CceEEEeCCCCceEEE-EeccC-------------------------CEEEEEECCCCCCC
Confidence 89999987642 1233444555555444 44443 2344555443 6
Q ss_pred eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC---eEEEEE
Q 048801 497 SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC---RICVWN 573 (1715)
Q Consensus 497 sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG---tI~IWD 573 (1715)
.|.++++.++.. ..| ..+..+...+. .|++++++|+....++ .|++|+
T Consensus 306 ~l~~~d~~~~~~----~~~-----------------------~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d 356 (693)
T 3iuj_A 306 RLVTVDAANPGP----AHW-----------------------RDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFD 356 (693)
T ss_dssp EEEEEETTSCCG----GGC-----------------------EEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEEC
T ss_pred EEEEEeCCCCCc----ccc-----------------------EEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEE
Confidence 788888875321 011 12333444443 8899999887766544 689999
Q ss_pred CCCCceEEEEe-cCCCCeEEEEEccCCCcEEEEEeC---CCcEEEEECCCCce
Q 048801 574 AVDGSLVHSLT-GHSASSYVLDVHPFNPRIAMSAGY---DGRTIVWDIWEGTP 622 (1715)
Q Consensus 574 l~sg~~l~tL~-gH~~~V~sLafSP~dg~lLaSgs~---DGtI~VWDl~tgk~ 622 (1715)
+..+ ....+. .+.+.+..+.+++++..++++.+. -++|+.||+.+++.
T Consensus 357 ~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 357 YEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp TTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred CCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 8744 445554 345567778888866666666543 27899999988764
No 255
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=98.93 E-value=6.2e-10 Score=128.88 Aligned_cols=87 Identities=16% Similarity=0.266 Sum_probs=80.3
Q ss_pred cccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHH
Q 048801 1628 SRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDW 1707 (1715)
Q Consensus 1628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~ 1707 (1715)
...+....|..+++....++|...+..||||+||++||++++|++++++..||++|++||.+||.+++.|..+|+.|.+.
T Consensus 27 ~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~ 106 (265)
T 3uv5_A 27 RDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDL 106 (265)
T ss_dssp HTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHHH
Confidence 33466777888888778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 048801 1708 FNRTLNK 1714 (1715)
Q Consensus 1708 ~~~~i~~ 1714 (1715)
|.+.+.+
T Consensus 107 ~~~~~~~ 113 (265)
T 3uv5_A 107 CDEKLKE 113 (265)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988765
No 256
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.92 E-value=2.9e-08 Score=120.41 Aligned_cols=267 Identities=11% Similarity=-0.037 Sum_probs=169.6
Q ss_pred eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec----------CCCcEEEEecCCCCCcceecCCCCCCCc
Q 048801 308 VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS----------DDGTCRIWDARYSQYSPRIYLPKPPDAI 377 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS----------~DGtVrIWDl~tg~~l~~i~~~~~~~~i 377 (1715)
+|.|.|..+++.+.++.....+ .++|+|+++. ++++. .++.|.+||+.+++.+.++.++......
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~---lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~ 121 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSD---FALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSC---EEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCE---EEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc
Confidence 7889999999999998755555 7999999984 44443 4789999999999988877654211100
Q ss_pred cCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC--CCeEEE--EeCCCCCccCCCCCceeeeeecCCCCCeeE
Q 048801 378 TGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS--DTFARV--WSACKSSVEDSEQPIHELDVLSGHENDVNY 453 (1715)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~--DG~IrV--WDl~t~~~~~~~~~~~~l~~l~gH~~~V~s 453 (1715)
.......++|+|||++|+++.. +..|.+ +|+.+ +..+... +.
T Consensus 122 ------------------~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t------------v~~i~v~-~~--- 167 (368)
T 1mda_H 122 ------------------VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD------------DQLTKSA-SC--- 167 (368)
T ss_dssp ------------------BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE------------EEEEECS-SC---
T ss_pred ------------------cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh------------ceEEECC-Cc---
Confidence 0112457899999999988864 467888 88753 1111110 00
Q ss_pred EEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCC-----CccCcccccccccccccCCCCCC
Q 048801 454 VQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS-----RRSHGKVGRWTRAYHLKVPPPPL 528 (1715)
Q Consensus 454 Lafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t-----~~~~~~~~~~~~~~~l~~~~~~~ 528 (1715)
+.+.|++ ...+++.+.||.+.+.++.+ ++.....
T Consensus 168 ~~~~p~g-------------------------~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~---------------- 206 (368)
T 1mda_H 168 FHIHPGA-------------------------AATHYLGSCPASLAASDLAAAPAAAGIVGAQC---------------- 206 (368)
T ss_dssp CCCEEEE-------------------------TTEEECCCCTTSCEEEECCSSCCCCEECCCCS----------------
T ss_pred eEEccCC-------------------------CeEEEEEcCCCCEEEEECccccccCCeEEEEe----------------
Confidence 1122332 24566777888888888775 2211000
Q ss_pred CCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCc--eEEEEec-------C---CCCeEEEEEc
Q 048801 529 PPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS--LVHSLTG-------H---SASSYVLDVH 596 (1715)
Q Consensus 529 ~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~--~l~tL~g-------H---~~~V~sLafS 596 (1715)
. . .+.....+. + ++++..++..+. +.|.+.|+.+.. .+..+.- + ......++|+
T Consensus 207 -----t--~--~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s 272 (368)
T 1mda_H 207 -----T--G--AQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp -----C--T--TSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred -----e--e--eeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEc
Confidence 0 0 000011222 3 555666555556 899999986542 2222211 0 0111226899
Q ss_pred cCCCcEEEEEe---C-----CCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCE-EEEEe-CCCeEEEEECCCCcccc
Q 048801 597 PFNPRIAMSAG---Y-----DGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTS-IVLSD-DVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 597 P~dg~lLaSgs---~-----DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~-LAsgs-~DG~I~IWdl~tGe~~k 666 (1715)
|++.+++++.. . ++.+.++|+.+++.+..+..+. ....++|+|||++ +++.. .++.|.++|+.+++.++
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~ 351 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence 96666666544 2 2356699999999999887554 6789999999985 55556 58999999999998775
Q ss_pred ccc
Q 048801 667 DAK 669 (1715)
Q Consensus 667 ~~~ 669 (1715)
..+
T Consensus 352 ~I~ 354 (368)
T 1mda_H 352 SVE 354 (368)
T ss_dssp ECC
T ss_pred EEE
Confidence 443
No 257
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.90 E-value=4.1e-06 Score=111.68 Aligned_cols=333 Identities=8% Similarity=0.058 Sum_probs=205.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEe-cCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASC-RGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR 324 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL-~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~ 324 (1715)
|.++..+++|.+.+ |+.++-|..|+..+++..... ..+...|.++...+++.+.+ |+.++-|.+|+..++.......
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECC
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeec
Confidence 88998888886554 666556889998877654321 12356799999888886555 4444448889987765433222
Q ss_pred C-------CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCC
Q 048801 325 G-------HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQS 397 (1715)
Q Consensus 325 g-------H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~ 397 (1715)
. ....|.++...+++. |..|+.+ -|.+||..++........+ ........
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~~g~----lWigt~~-Gl~~~~~~~~~~~~~~~~~------------------~~~~~l~~ 309 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDSQNR----LWIGTFN-DLNIYHEGTDSFASYSSNP------------------VENGSLSQ 309 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECTTSC----EEEEESS-CEEEEETTTTEEEEECCCT------------------TSTTSCSS
T ss_pred CCCCccccCCCeEEEEEEcCCCC----EEEEeCC-hhheEcCCCCeEEEEecCC------------------CCCCCCCC
Confidence 1 135699999988875 5555555 4888998766532211000 00112234
Q ss_pred cceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee----cCCCCCeeEEEEccCcccccccccccccc
Q 048801 398 HQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL----SGHENDVNYVQFSGCAVASRSAMSDAFKE 473 (1715)
Q Consensus 398 ~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l----~gH~~~V~sLafspdg~as~~~~~~~~~~ 473 (1715)
..|.++...++|.+ .+|+.++-|.+|+..+... ...... .-....|.++....++
T Consensus 310 ~~i~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~~-------~~~~~~~~~~~l~~~~V~~i~~d~~g------------- 368 (795)
T 4a2l_A 310 RSVRSIFMDSQGGM-WLGTYFGGLNYYHPIRNRF-------KNIRNIPYKNSLSDNVVSCIVEDKDK------------- 368 (795)
T ss_dssp SCEEEEEECTTSCE-EEEESSSCEEEECGGGGSS-------EEECCCTTSSSCSCSSEEEEEECTTS-------------
T ss_pred CcEEEEEEeCCcCE-EEEECCCCeEEeCCCcccc-------eEEcCCCCCCCCCCCeeEEEEECCCC-------------
Confidence 56999999999874 4566677788888754321 111000 1123468888777654
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEe
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW 553 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtslaf 553 (1715)
.|..|+.++-|..|+..++.... +. ... ... ...-....|.+++.
T Consensus 369 --------------~lWiGt~~~Gl~~~~~~~~~~~~--------~~--~~~---------~~~--~~~l~~~~v~~i~~ 413 (795)
T 4a2l_A 369 --------------NLWIGTNDGGLNLYNPITQRFTS--------YT--LQE---------DES--ARGIGSNNIKAVYV 413 (795)
T ss_dssp --------------CEEEEESSSCEEEECTTTCCEEE--------EC--CC-----------------CCSCSCEEEEEE
T ss_pred --------------CEEEEECCCCeEEEcCCCCcEEE--------Ee--cCC---------CCc--ccCCCCccEEEEEE
Confidence 67778888889999877533110 00 000 000 00011346899999
Q ss_pred CCCCCEEEEEecCCeEEEEECCCCceEEEEe----cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEc-
Q 048801 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLT----GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEI- 628 (1715)
Q Consensus 554 SPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~----gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~- 628 (1715)
.++|..|.+|+.++-|.+||..+++...... .+...|.++...+ ++.+.+. +.+ -|.+||..+++.......
T Consensus 414 d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwig-t~~-Gl~~~~~~~~~~~~~~~~~ 490 (795)
T 4a2l_A 414 DEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWLG-TLS-ALVRFNPEQRSFTTIEKEK 490 (795)
T ss_dssp ETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEEE-ESS-CEEEEETTTTEEEECCBCT
T ss_pred cCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEEE-ecC-ceeEEeCCCCeEEEccccc
Confidence 9999866778887889999998876543321 2345789998877 5555543 444 588999877754332211
Q ss_pred -----ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Q 048801 629 -----GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGES 664 (1715)
Q Consensus 629 -----h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~ 664 (1715)
....|.++...++|.+.+.+. +.|.+|+..+++.
T Consensus 491 ~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~ 529 (795)
T 4a2l_A 491 DGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI 529 (795)
T ss_dssp TCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE
T ss_pred cccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE
Confidence 134688999999998766554 5688898876653
No 258
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=1.7e-09 Score=111.50 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=68.9
Q ss_pred chhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChH----HHHHHHHHHH
Q 048801 1631 QDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAA----LSAKVERLRD 1706 (1715)
Q Consensus 1631 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~----i~~~~~~l~~ 1706 (1715)
+....|..+ .++|...+..||||+||++||+++.|.+++++..||++|++||.+||.++++ |..+|..|.+
T Consensus 28 ~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~~~~~i~~~A~~L~~ 102 (131)
T 2dkw_A 28 KRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKDPGDKIIRHRACTLKD 102 (131)
T ss_dssp GGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHH
T ss_pred ccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHHHHH
Confidence 334445555 7899999999999999999999999999999999999999999999999984 6789999999
Q ss_pred HHHHHhh
Q 048801 1707 WFNRTLN 1713 (1715)
Q Consensus 1707 ~~~~~i~ 1713 (1715)
.+...|.
T Consensus 103 ~~~~~l~ 109 (131)
T 2dkw_A 103 TAHAIIA 109 (131)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888773
No 259
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.89 E-value=3.9e-07 Score=108.31 Aligned_cols=233 Identities=12% Similarity=0.033 Sum_probs=148.7
Q ss_pred eEEEEECCCC-CEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcc
Q 048801 288 ITDLAVSSNN-TLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSP 366 (1715)
Q Consensus 288 VtsLafSpDg-~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~ 366 (1715)
..+++|++++ .++++...++.|.+||..++.. ..+. ....+.+++|++++. ++++ +.++ |.+||..+++...
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~v~~i~~~~dg~---l~v~-~~~g-l~~~d~~~g~~~~ 123 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRK-TVHA-LPFMGSALAKISDSK---QLIA-SDDG-LFLRDTATGVLTL 123 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEE-CSSCEEEEEEEETTE---EEEE-ETTE-EEEEETTTCCEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-EEEE-CCCcceEEEEeCCCe---EEEE-ECCC-EEEEECCCCcEEE
Confidence 4567899974 5566666788999999987754 3333 356799999999985 4443 4444 9999988776432
Q ss_pred eecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC------CCeEEEEeCCCCCccCCCCCcee
Q 048801 367 RIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS------DTFARVWSACKSSVEDSEQPIHE 440 (1715)
Q Consensus 367 ~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~------DG~IrVWDl~t~~~~~~~~~~~~ 440 (1715)
..... .......+.+++++++|+++++... .+.|..++ +++.
T Consensus 124 ~~~~~---------------------~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~--------- 171 (326)
T 2ghs_A 124 HAELE---------------------SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV--------- 171 (326)
T ss_dssp EECSS---------------------TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE---------
T ss_pred EeeCC---------------------CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE---------
Confidence 11100 0011245889999999997765532 24555555 3221
Q ss_pred eeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecC--CC-ccCcccccccc
Q 048801 441 LDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPR--SR-RSHGKVGRWTR 517 (1715)
Q Consensus 441 l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~--t~-~~~~~~~~~~~ 517 (1715)
..+..+....+.++|++++ ...+++.+.++.|.+|++. ++ ..... .
T Consensus 172 -~~~~~~~~~~~~i~~s~dg-------------------------~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~-----~ 220 (326)
T 2ghs_A 172 -TKLFADISIPNSICFSPDG-------------------------TTGYFVDTKVNRLMRVPLDARTGLPTGKA-----E 220 (326)
T ss_dssp -EEEEEEESSEEEEEECTTS-------------------------CEEEEEETTTCEEEEEEBCTTTCCBSSCC-----E
T ss_pred -EEeeCCCcccCCeEEcCCC-------------------------CEEEEEECCCCEEEEEEcccccCCcccCc-----e
Confidence 1122222356789999886 1244556678899999985 33 21000 0
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEc-
Q 048801 518 AYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVH- 596 (1715)
Q Consensus 518 ~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafS- 596 (1715)
. ...+......+..++++++|.+.++...++.|.+|+. +++.+..+..+...+++++|+
T Consensus 221 ~-------------------~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g 280 (326)
T 2ghs_A 221 V-------------------FIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIG 280 (326)
T ss_dssp E-------------------EEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEES
T ss_pred E-------------------EEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEec
Confidence 0 0001112234678999999988877767789999998 688888888777789999998
Q ss_pred cCCCcEEEEEeCCC
Q 048801 597 PFNPRIAMSAGYDG 610 (1715)
Q Consensus 597 P~dg~lLaSgs~DG 610 (1715)
++++.++++...++
T Consensus 281 ~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 281 PDASRLLVTSAREH 294 (326)
T ss_dssp TTSCEEEEEEBCTT
T ss_pred CCCCEEEEEecCCC
Confidence 75455656555443
No 260
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.89 E-value=5.5e-07 Score=107.01 Aligned_cols=224 Identities=13% Similarity=0.027 Sum_probs=145.0
Q ss_pred CeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccC
Q 048801 329 AVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNAN 408 (1715)
Q Consensus 329 ~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpd 408 (1715)
-..+++|+|++.. ++++...++.|.+||..+++.. .+.. ...+.+++|+++
T Consensus 50 ~~egp~~~~~~~~--l~~~d~~~~~i~~~d~~~~~~~-~~~~--------------------------~~~v~~i~~~~d 100 (326)
T 2ghs_A 50 LGEGPTFDPASGT--AWWFNILERELHELHLASGRKT-VHAL--------------------------PFMGSALAKISD 100 (326)
T ss_dssp BEEEEEEETTTTE--EEEEEGGGTEEEEEETTTTEEE-EEEC--------------------------SSCEEEEEEEET
T ss_pred CCcCCeEeCCCCE--EEEEECCCCEEEEEECCCCcEE-EEEC--------------------------CCcceEEEEeCC
Confidence 3467889997653 5667777899999998776431 1111 234889999999
Q ss_pred CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeec--CCCCCeeEEEEccCcccccccccccccccccccccCCcccC
Q 048801 409 GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS--GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCH 486 (1715)
Q Consensus 409 G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~--gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~ 486 (1715)
|+++++. .+ .|.+||..+++. ..+.... .....++.+++++++
T Consensus 101 g~l~v~~-~~-gl~~~d~~~g~~-------~~~~~~~~~~~~~~~~~i~~d~~G-------------------------- 145 (326)
T 2ghs_A 101 SKQLIAS-DD-GLFLRDTATGVL-------TLHAELESDLPGNRSNDGRMHPSG-------------------------- 145 (326)
T ss_dssp TEEEEEE-TT-EEEEEETTTCCE-------EEEECSSTTCTTEEEEEEEECTTS--------------------------
T ss_pred CeEEEEE-CC-CEEEEECCCCcE-------EEEeeCCCCCCCCCCCCEEECCCC--------------------------
Confidence 9877765 34 499999876542 1111111 112357889999876
Q ss_pred ceEEEEcC------CCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEE
Q 048801 487 DNIVTCSR------DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFV 560 (1715)
Q Consensus 487 ~~LaSgS~------DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~L 560 (1715)
.++++... .+.|..++ +++.. .+.........++|+|||+.|
T Consensus 146 ~l~v~~~~~~~~~~~~~l~~~~--~g~~~------------------------------~~~~~~~~~~~i~~s~dg~~l 193 (326)
T 2ghs_A 146 ALWIGTMGRKAETGAGSIYHVA--KGKVT------------------------------KLFADISIPNSICFSPDGTTG 193 (326)
T ss_dssp CEEEEEEETTCCTTCEEEEEEE--TTEEE------------------------------EEEEEESSEEEEEECTTSCEE
T ss_pred CEEEEeCCCcCCCCceEEEEEe--CCcEE------------------------------EeeCCCcccCCeEEcCCCCEE
Confidence 34443321 23444444 22110 000111235689999999877
Q ss_pred EEE-ecCCeEEEEECC--CC-ce-----EEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccc
Q 048801 561 LAA-IMDCRICVWNAV--DG-SL-----VHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRF 631 (1715)
Q Consensus 561 aTg-s~DGtI~IWDl~--sg-~~-----l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~ 631 (1715)
+.+ +.++.|.+|++. +| .. +..+.........+++.+ ++.++++...++.|.+|+. +++.+..+..+..
T Consensus 194 yv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~ 271 (326)
T 2ghs_A 194 YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK 271 (326)
T ss_dssp EEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECT-TCCEEEEEECSCS
T ss_pred EEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCEEEEECC-CCCEEEEEECCCC
Confidence 555 456899999986 56 32 223333445678899988 5677766666788999998 7888888876666
Q ss_pred eEEEEEEc-CCCCEEEEEeC
Q 048801 632 KLVDGKFS-PDGTSIVLSDD 650 (1715)
Q Consensus 632 ~V~svafS-PDG~~LAsgs~ 650 (1715)
.+.+++|+ +|+..|++++.
T Consensus 272 ~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 272 QTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp BEEEEEEESTTSCEEEEEEB
T ss_pred CcEEEEEecCCCCEEEEEec
Confidence 79999998 89887766554
No 261
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.87 E-value=1e-07 Score=124.94 Aligned_cols=297 Identities=12% Similarity=0.093 Sum_probs=173.7
Q ss_pred CCEEEEEeCCCeeEEEECCCCCceEEEeCCCCC-----------eEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCc
Q 048801 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTGA-----------VTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS 365 (1715)
Q Consensus 297 g~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~-----------VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l 365 (1715)
+..|++++.++.|..+|..+|+.+..+...... ...+++ .+. .|++++.|+.|..+|..+|+.+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~---~v~v~~~dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKG---KVYVGAWDGRLIALDAATGKEV 151 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETT---EEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECC---EEEEEcCCCEEEEEECCCCCEE
Confidence 456777777889999999999988887643210 112333 233 6888889999999999999987
Q ss_pred ceecCC-CCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC------CCeEEEEeCCCCCccCCCCCc
Q 048801 366 PRIYLP-KPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS------DTFARVWSACKSSVEDSEQPI 438 (1715)
Q Consensus 366 ~~i~~~-~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~------DG~IrVWDl~t~~~~~~~~~~ 438 (1715)
..+... .... ...+.+.-...++ .+++++. +|.|+.||..+++........
T Consensus 152 W~~~~~~~~~~---------------------~~~~~~~p~v~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 209 (677)
T 1kb0_A 152 WHQNTFEGQKG---------------------SLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSV 209 (677)
T ss_dssp EEEETTTTCCS---------------------SCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred eeecCCcCcCc---------------------CcccccCcEEECC-EEEEEecccccCCCCEEEEEECCCCcEEEEeccC
Confidence 766442 1000 0001100001134 4444443 689999999887642110000
Q ss_pred eeee--------------eec---------CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC
Q 048801 439 HELD--------------VLS---------GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD 495 (1715)
Q Consensus 439 ~~l~--------------~l~---------gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D 495 (1715)
.... ... +.......+++++. ...|+.+..+
T Consensus 210 ~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~--------------------------~~~vy~~~~~ 263 (677)
T 1kb0_A 210 PGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE--------------------------LNTMYVGTGN 263 (677)
T ss_dssp CCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT--------------------------TTEEEEECCC
T ss_pred CCCccccccccccccccccccccCceeEeCCCcccccceeEcCC--------------------------CCEEEEECCC
Confidence 0000 000 00001112333332 2455555544
Q ss_pred C-------------------eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC
Q 048801 496 G-------------------SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD 556 (1715)
Q Consensus 496 G-------------------sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD 556 (1715)
+ .|..+|..+++..-.. ... ... ..... .......+....+
T Consensus 264 ~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~-----~~~----~~d----------~wd~~-~~~~p~l~~~~~d 323 (677)
T 1kb0_A 264 GSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHY-----QET----PGD----------NWDYT-STQPMILADIKIA 323 (677)
T ss_dssp EESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE-----ESS----TTC----------CSCCC-CCSCCEEEEEEET
T ss_pred CccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEE-----ecC----CCc----------ccccc-cCCCcEEEecccC
Confidence 3 5888888877643221 100 000 00000 0111222333347
Q ss_pred C---CEEEEEecCCeEEEEECCCCceEEEEecCC-----------CCe------------------------EEEEEccC
Q 048801 557 N---RFVLAAIMDCRICVWNAVDGSLVHSLTGHS-----------ASS------------------------YVLDVHPF 598 (1715)
Q Consensus 557 G---~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~-----------~~V------------------------~sLafSP~ 598 (1715)
| ..|++++.+|.|+++|..+|+++..+.-.. .++ ..++|+|+
T Consensus 324 G~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~ 403 (677)
T 1kb0_A 324 GKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ 403 (677)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT
T ss_pred CcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC
Confidence 7 688999999999999999999988765221 011 14678885
Q ss_pred CCcEEEEEe------------------------------------------CCCcEEEEECCCCceEEEEEcccceEEEE
Q 048801 599 NPRIAMSAG------------------------------------------YDGRTIVWDIWEGTPIRIYEIGRFKLVDG 636 (1715)
Q Consensus 599 dg~lLaSgs------------------------------------------~DGtI~VWDl~tgk~l~tl~~h~~~V~sv 636 (1715)
.+.+++... ..|.|..||+.+|+.+..+.. ..++...
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g 482 (677)
T 1kb0_A 404 TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGG 482 (677)
T ss_dssp TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCC
T ss_pred CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCc
Confidence 444443222 127899999999999988873 3345556
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCccccc
Q 048801 637 KFSPDGTSIVLSDDVGQIYLLNTGQGESQKD 667 (1715)
Q Consensus 637 afSPDG~~LAsgs~DG~I~IWdl~tGe~~k~ 667 (1715)
.++.+|.++++++.||.|++||..+|+.+..
T Consensus 483 ~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~ 513 (677)
T 1kb0_A 483 TLTTAGNVVFQGTADGRLVAYHAATGEKLWE 513 (677)
T ss_dssp EEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ceEeCCCEEEEECCCCcEEEEECCCCceeee
Confidence 6778888999999999999999999987643
No 262
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=98.87 E-value=2.2e-09 Score=124.34 Aligned_cols=88 Identities=20% Similarity=0.267 Sum_probs=81.1
Q ss_pred cccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHH
Q 048801 1628 SRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDW 1707 (1715)
Q Consensus 1628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~ 1707 (1715)
...++...|..+++....++|...+..|||++||++||++++|.+++++..||++|++||.+||.+++.|..+|+.|.+.
T Consensus 150 ~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~s~~~~~A~~l~~~ 229 (265)
T 3uv5_A 150 MAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNV 229 (265)
T ss_dssp TTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred HhhhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 44566777888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC
Q 048801 1708 FNRTLNKL 1715 (1715)
Q Consensus 1708 ~~~~i~~~ 1715 (1715)
|.+.+..+
T Consensus 230 ~~~~~~~~ 237 (265)
T 3uv5_A 230 CYQTLTEY 237 (265)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99988653
No 263
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=98.86 E-value=1.7e-09 Score=127.37 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=78.3
Q ss_pred cchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHH
Q 048801 1630 KQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFN 1709 (1715)
Q Consensus 1630 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~ 1709 (1715)
.+.+..|..+++....++|...+..||||+||++||++++|++++++..||++|++||.+||.+++.|..+|+.|.++|.
T Consensus 178 ~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~ 257 (311)
T 2r0y_A 178 VKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFN 257 (311)
T ss_dssp SCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 35667788888777788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc
Q 048801 1710 RTLNK 1714 (1715)
Q Consensus 1710 ~~i~~ 1714 (1715)
+.+.+
T Consensus 258 ~~~~~ 262 (311)
T 2r0y_A 258 YLIQK 262 (311)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98865
No 264
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.85 E-value=1.1e-05 Score=107.51 Aligned_cols=328 Identities=11% Similarity=0.074 Sum_probs=205.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecC-------CCCCeEEEEECCCCCEEEEEeCCCeeEEEECC
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRG-------HEGDITDLAVSSNNTLVASASNDFVIRVWRLP 315 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~g-------Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl~ 315 (1715)
...|.++...++|.+.+ |+.++-|.+|+..+++....... ....|.++...++|.+.+. +.+ -|.+|+..
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIG-TFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEE-ESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEE-eCC-hhheEcCC
Confidence 46788998888886554 44444488899887665443222 1357999999988876554 445 58889987
Q ss_pred CCCceEEEeC-------CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCC
Q 048801 316 DGLPISVLRG-------HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNG 388 (1715)
Q Consensus 316 tg~~l~~L~g-------H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~ 388 (1715)
++........ ....|.+|...+++. |..|+.++-|..|+..++.... +.....
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~----lWigt~~~Gl~~~~~~~~~~~~-~~~~~~--------------- 350 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG----MWLGTYFGGLNYYHPIRNRFKN-IRNIPY--------------- 350 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC----EEEEESSSCEEEECGGGGSSEE-ECCCTT---------------
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC----EEEEECCCCeEEeCCCcccceE-EcCCCC---------------
Confidence 7654332211 235799999998875 6777777779999876554321 110000
Q ss_pred CCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee------cCCCCCeeEEEEccCccc
Q 048801 389 PSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL------SGHENDVNYVQFSGCAVA 462 (1715)
Q Consensus 389 ~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l------~gH~~~V~sLafspdg~a 462 (1715)
........|.+++..++|.+. +|+.++-|..|+..++... ..... ......|.++...+++
T Consensus 351 ---~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~v~~i~~d~~g-- 417 (795)
T 4a2l_A 351 ---KNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFT-------SYTLQEDESARGIGSNNIKAVYVDEKK-- 417 (795)
T ss_dssp ---SSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEE-------EECCC------CCSCSCEEEEEEETTT--
T ss_pred ---CCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEE-------EEecCCCCcccCCCCccEEEEEEcCCC--
Confidence 011234569999999888754 4777777899998764321 11000 0123567888776654
Q ss_pred ccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccccc
Q 048801 463 SRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLL 542 (1715)
Q Consensus 463 s~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~ 542 (1715)
..|..|+.++-|.+||..+++... +. .. .. .
T Consensus 418 ------------------------~~lWigt~~~Gl~~~d~~~~~~~~--------~~--~~---------~~------~ 448 (795)
T 4a2l_A 418 ------------------------SLVYIGTHAGGLSILHRNSGQVEN--------FN--QR---------NS------Q 448 (795)
T ss_dssp ------------------------TEEEEEETTTEEEEEETTTCCEEE--------EC--TT---------TS------C
T ss_pred ------------------------CEEEEEeCcCceeEEeCCCCcEEE--------ee--cC---------CC------C
Confidence 327777877789999987643110 00 00 00 0
Q ss_pred CCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEec------CCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 543 PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTG------HSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 543 ~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g------H~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
.....|.++...++|.+.+. +. +-|.+|+..+++....... ....|.++...+ ++.+.+. +. +-|.+|+
T Consensus 449 l~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWig-t~-~Gl~~~~ 523 (795)
T 4a2l_A 449 LVNENVYAILPDGEGNLWLG-TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWIG-GE-EGLSVFK 523 (795)
T ss_dssp CSCSCEEEEEECSSSCEEEE-ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEEE-ES-SCEEEEE
T ss_pred cCCCeeEEEEECCCCCEEEE-ec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEEEE-eC-CceEEEe
Confidence 12346889999988876654 44 4588999887755432211 235789998887 5555544 34 4588999
Q ss_pred CCCCceEEEEE-------cccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Q 048801 617 IWEGTPIRIYE-------IGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGES 664 (1715)
Q Consensus 617 l~tgk~l~tl~-------~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~ 664 (1715)
..+++. .+. .....|.++...++|.+.+++. . .|..|+..+++.
T Consensus 524 ~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~ 574 (795)
T 4a2l_A 524 QEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQI 574 (795)
T ss_dssp EETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEE
T ss_pred CCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcE
Confidence 877765 332 1234688999999998666544 3 688899877643
No 265
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.85 E-value=3.1e-07 Score=107.72 Aligned_cols=238 Identities=13% Similarity=0.061 Sum_probs=150.6
Q ss_pred EEEecCCCCCeEEEEECCCCC-EEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEE
Q 048801 278 LASCRGHEGDITDLAVSSNNT-LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356 (1715)
Q Consensus 278 l~tL~gHs~~VtsLafSpDg~-lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrI 356 (1715)
+..+..+......++|+++|+ +++++..++.|..|+. ++. +..+..+...+.++++.+++. ++++...++.|.+
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~---l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQR---LVHCEHGRRAITR 111 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSC---EEEEETTTTEEEE
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCC---EEEEECCCCEEEE
Confidence 344444556678899999998 6677777899999997 554 455666777899999999986 5566556678999
Q ss_pred EecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEE----ecC-------------CC
Q 048801 357 WDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVT----GSS-------------DT 419 (1715)
Q Consensus 357 WDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~Lat----Gs~-------------DG 419 (1715)
|+.. +... .+... . .......+.+++++++|+++++ |.. .+
T Consensus 112 ~~~~-g~~~-~~~~~-----~---------------~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~ 169 (305)
T 3dr2_A 112 SDAD-GQAH-LLVGR-----Y---------------AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHH 169 (305)
T ss_dssp ECTT-SCEE-EEECE-----E---------------TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCE
T ss_pred ECCC-CCEE-EEEec-----c---------------CCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCC
Confidence 9875 4421 11100 0 0001223678999999998886 432 25
Q ss_pred eEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC----
Q 048801 420 FARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD---- 495 (1715)
Q Consensus 420 ~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D---- 495 (1715)
.|..|+..+++. . .+. .....+.++|+|++ ..|+.+...
T Consensus 170 ~v~~~d~~~g~~-------~---~~~-~~~~p~gl~~spdg--------------------------~~lyv~~~~~~~~ 212 (305)
T 3dr2_A 170 SVYRLPPDGSPL-------Q---RMA-DLDHPNGLAFSPDE--------------------------QTLYVSQTPEQGH 212 (305)
T ss_dssp EEEEECSSSCCC-------E---EEE-EESSEEEEEECTTS--------------------------SEEEEEECCC---
T ss_pred eEEEEcCCCCcE-------E---EEe-cCCCCcceEEcCCC--------------------------CEEEEEecCCcCC
Confidence 677777755432 1 111 23456789999986 445555443
Q ss_pred --CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEE
Q 048801 496 --GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN 573 (1715)
Q Consensus 496 --GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWD 573 (1715)
+.|.+|++.... ... . ..+. .........++++++|++.+ ++.+ .|.+|+
T Consensus 213 ~~~~i~~~~~~~~~-l~~---~-~~~~---------------------~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~ 264 (305)
T 3dr2_A 213 GSVEITAFAWRDGA-LHD---R-RHFA---------------------SVPDGLPDGFCVDRGGWLWS-SSGT-GVCVFD 264 (305)
T ss_dssp CCCEEEEEEEETTE-EEE---E-EEEE---------------------CCSSSCCCSEEECTTSCEEE-CCSS-EEEEEC
T ss_pred CCCEEEEEEecCCC-ccC---C-eEEE---------------------ECCCCCCCeEEECCCCCEEE-ecCC-cEEEEC
Confidence 789999886432 100 0 0000 00122345688999999554 4444 599999
Q ss_pred CCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCC
Q 048801 574 AVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDG 610 (1715)
Q Consensus 574 l~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DG 610 (1715)
. +++.+..+..+. .+.+++|++ ++..|+.++.++
T Consensus 265 ~-~g~~~~~~~~~~-~~~~~~f~~-d~~~L~it~~~~ 298 (305)
T 3dr2_A 265 S-DGQLLGHIPTPG-TASNCTFDQ-AQQRLFITGGPC 298 (305)
T ss_dssp T-TSCEEEEEECSS-CCCEEEECT-TSCEEEEEETTE
T ss_pred C-CCCEEEEEECCC-ceeEEEEeC-CCCEEEEEcCCe
Confidence 8 688888887655 588999997 444444445454
No 266
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.83 E-value=1.5e-06 Score=104.64 Aligned_cols=279 Identities=11% Similarity=0.055 Sum_probs=166.8
Q ss_pred CCEEEEEeCCCeeEEEECCCCCceEEEeCC---------CCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcce
Q 048801 297 NTLVASASNDFVIRVWRLPDGLPISVLRGH---------TGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPR 367 (1715)
Q Consensus 297 g~lLASGS~DGtIrVWDl~tg~~l~~L~gH---------~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~ 367 (1715)
+..|++++.++.|..+|..+|+.+...... ...+.+.....+ . .++.++.++.|..+|..+++.+..
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~v~v~~~~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSG-G---HVYIGSEKAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEET-T---EEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeC-C---EEEEEcCCCEEEEEECCCCCEEEE
Confidence 567888888999999999999988776542 122322222223 3 678888899999999999987655
Q ss_pred ecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCC
Q 048801 368 IYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGH 447 (1715)
Q Consensus 368 i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH 447 (1715)
....... ... ..+ .+..+++++.++.|..+|..+++. +......
T Consensus 129 ~~~~~~~---------------------~~~----p~~--~~~~v~v~~~~g~l~~~d~~tG~~---------~W~~~~~ 172 (376)
T 3q7m_A 129 TKVAGEA---------------------LSR----PVV--SDGLVLIHTSNGQLQALNEADGAV---------KWTVNLD 172 (376)
T ss_dssp EECSSCC---------------------CSC----CEE--ETTEEEEECTTSEEEEEETTTCCE---------EEEEECC
T ss_pred EeCCCce---------------------EcC----CEE--ECCEEEEEcCCCeEEEEECCCCcE---------EEEEeCC
Confidence 5432110 000 111 134677788899999999987643 2221111
Q ss_pred CCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCC
Q 048801 448 ENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPP 527 (1715)
Q Consensus 448 ~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~ 527 (1715)
. .+..+ .... ........++.++.+|.|..+|..+++.. |..... .+.
T Consensus 173 ~-~~~~~--~~~~--------------------~~~~~~~~v~~g~~~g~l~~~d~~tG~~~-----w~~~~~----~~~ 220 (376)
T 3q7m_A 173 M-PSLSL--RGES--------------------APTTAFGAAVVGGDNGRVSAVLMEQGQMI-----WQQRIS----QAT 220 (376)
T ss_dssp C--------CCCC--------------------CCEEETTEEEECCTTTEEEEEETTTCCEE-----EEEECC----C--
T ss_pred C-Cceee--cCCC--------------------CcEEECCEEEEEcCCCEEEEEECCCCcEE-----EEEecc----cCC
Confidence 1 11000 0000 00011357888888999999999886633 221110 000
Q ss_pred CCCCCCCCCCccccc-CCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEE
Q 048801 528 LPPQPPRGGPRQRLL-PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSA 606 (1715)
Q Consensus 528 ~~~~~~~g~~~~~l~-~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSg 606 (1715)
.. .....+. ....+ .+ .+..|++++.++.|..+|..+|+.+..... .....+... + ..++.+
T Consensus 221 ~~------~~~~~~~~~~~~p----~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~--~-~~l~~~ 283 (376)
T 3q7m_A 221 GS------TEIDRLSDVDTTP----VV--VNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIVD--G-NRIYLV 283 (376)
T ss_dssp ---------------CCCCCC----EE--ETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEEE--T-TEEEEE
T ss_pred CC------cccccccccCCCc----EE--ECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceEE--C-CEEEEE
Confidence 00 0000000 00001 11 245677788899999999999998877653 234455442 3 455567
Q ss_pred eCCCcEEEEECCCCceEEEEEcc-cceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 048801 607 GYDGRTIVWDIWEGTPIRIYEIG-RFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 607 s~DGtI~VWDl~tgk~l~tl~~h-~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k 666 (1715)
+.+|.|..+|..+|+.+...... ...+....+ .+..|++++.+|.|++||..+|+.+.
T Consensus 284 ~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 284 DQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVA 342 (376)
T ss_dssp ETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEE
Confidence 78999999999999988777522 222222222 35678889999999999999998653
No 267
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=98.82 E-value=3e-09 Score=128.16 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=78.7
Q ss_pred cchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHH
Q 048801 1630 KQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFN 1709 (1715)
Q Consensus 1630 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~ 1709 (1715)
.+.+..|..+++....++|...+..||||+||++||++++|+++++++.||++|++||.+||.+++.|..+|+.|.++|.
T Consensus 228 ~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~ 307 (361)
T 2r10_A 228 VKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFN 307 (361)
T ss_dssp SCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CcchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 35667788888777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc
Q 048801 1710 RTLNK 1714 (1715)
Q Consensus 1710 ~~i~~ 1714 (1715)
+.+.+
T Consensus 308 ~~~~~ 312 (361)
T 2r10_A 308 YLIQK 312 (361)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98865
No 268
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.81 E-value=4.7e-08 Score=119.13 Aligned_cols=180 Identities=9% Similarity=0.023 Sum_probs=126.7
Q ss_pred ceeEEEEccCCCeEEEecCCCeEEEEeCCCCC--ccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccc
Q 048801 399 QILCCAYNANGTVFVTGSSDTFARVWSACKSS--VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENV 476 (1715)
Q Consensus 399 ~VtslafSpdG~~LatGs~DG~IrVWDl~t~~--~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~ 476 (1715)
.+..+++++...+|++|+.++ +.+|++.... ........... ....+.. |..|+| ++
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~---------------- 97 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HG---------------- 97 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ET----------------
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CC----------------
Confidence 588999999999999999875 5569875422 00000001111 1223455 999999 43
Q ss_pred ccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC
Q 048801 477 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD 556 (1715)
Q Consensus 477 ~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD 556 (1715)
..|+++ .++.|++||+.+.... .....+...+.++.+.+.
T Consensus 98 ----------~~L~v~-~~~~l~v~dv~sl~~~-----------------------------~~~~~~~~~v~~i~~~~p 137 (388)
T 1xip_A 98 ----------DQVLVS-TRNALYSLDLEELSEF-----------------------------RTVTSFEKPVFQLKNVNN 137 (388)
T ss_dssp ----------TEEEEE-ESSEEEEEESSSTTCE-----------------------------EEEEECSSCEEEEEECSS
T ss_pred ----------CEEEEE-cCCcEEEEEchhhhcc-----------------------------CccceeecceeeEEecCC
Confidence 678877 8899999999863210 011223344666666654
Q ss_pred CCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce--EEEE------E-
Q 048801 557 NRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTP--IRIY------E- 627 (1715)
Q Consensus 557 G~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~--l~tl------~- 627 (1715)
. +++++.||.|.+||+.++.... +...|+|++||| .+ ++.|..||+|++|+...+.. .+++ .
T Consensus 138 ~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~ 208 (388)
T 1xip_A 138 T--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEE 208 (388)
T ss_dssp E--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS-SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHT
T ss_pred C--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCCccccccceecCCccccc
Confidence 3 8889999999999999887654 345799999999 44 56789999999999877775 5666 2
Q ss_pred --cccceEEEEEEcCCCCEEEEE
Q 048801 628 --IGRFKLVDGKFSPDGTSIVLS 648 (1715)
Q Consensus 628 --~h~~~V~svafSPDG~~LAsg 648 (1715)
+|...|.++.|.+++.+|++=
T Consensus 209 ~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 209 LPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp SCTTTSEEEEEEESSSSEEEEEE
T ss_pred ccCCCeeEEEEEEecCCeEEEEE
Confidence 256789999999999988853
No 269
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.81 E-value=6.1e-11 Score=144.09 Aligned_cols=141 Identities=8% Similarity=0.016 Sum_probs=79.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCC-eE-
Q 048801 254 SGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGA-VT- 331 (1715)
Q Consensus 254 DG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~-Vt- 331 (1715)
++..|++++.||.|..||..+|+.+..+.. +.+.+..+..++.++++++.||.|+.||..+|+.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 577999999999999999999999988876 56666666678888888889999999999999887776543211 10
Q ss_pred EEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCe
Q 048801 332 AIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTV 411 (1715)
Q Consensus 332 sLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~ 411 (1715)
+..+. .+. .|++++.++.|+.||..+|+.+..+.... ...++|++..
T Consensus 86 sp~~~-~~~---~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----------------------------~~~~~p~~~~ 132 (369)
T 2hz6_A 86 SPCRS-SDG---ILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----------------------------ADSLSPSTSL 132 (369)
T ss_dssp CSCC---------CCCCEEEEEEEEECCC---------------------------------------------------
T ss_pred CceEe-cCC---EEEEEeCCCEEEEEECCCCcEEEEecCCC-----------------------------cccccccCCE
Confidence 01111 222 56777888889999988887654332100 1123446666
Q ss_pred EEEecCCCeEEEEeCCCC
Q 048801 412 FVTGSSDTFARVWSACKS 429 (1715)
Q Consensus 412 LatGs~DG~IrVWDl~t~ 429 (1715)
|++++.++.|+.||..++
T Consensus 133 v~~~~~dg~v~a~d~~tG 150 (369)
T 2hz6_A 133 LYLGRTEYTITMYDTKTR 150 (369)
T ss_dssp EEEEEEEEEEECCCSSSS
T ss_pred EEEEecCCEEEEEECCCC
Confidence 777777777777777654
No 270
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=98.80 E-value=3.1e-09 Score=118.64 Aligned_cols=105 Identities=12% Similarity=0.167 Sum_probs=89.4
Q ss_pred CCCChHHHHHHhhhHHHhhhhccccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhh---hhhhhHHHHHHHHHH
Q 048801 1606 PEIDSESRDKLLSSFNKLEQSVSRKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVN---NYYRSLEAAKDDINV 1682 (1715)
Q Consensus 1606 ~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n---~~Yr~~~~~~~d~~~ 1682 (1715)
..+.+..+.++...|..|... +....|..++.. ..++|...+..||||+||++||++ +.|++++++..||++
T Consensus 76 ~~ls~~~~~~c~~il~~l~~~----~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~l 150 (207)
T 3u5n_A 76 QGLSPVDQRKCERLLLYLYCH----ELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRL 150 (207)
T ss_dssp CSSCHHHHHHHHHHHHHHHTS----TTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHhc----cchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHH
Confidence 457777888887777777653 344455556554 679999999999999999999998 699999999999999
Q ss_pred HHhhhhhccC-----------------CChHHHHHHHHHHHHHHHHhhcC
Q 048801 1683 MLSNAESYFI-----------------KNAALSAKVERLRDWFNRTLNKL 1715 (1715)
Q Consensus 1683 ~~~Na~~~n~-----------------~~~~i~~~~~~l~~~~~~~i~~~ 1715 (1715)
|++||.+||. +++.|.+.|+.|...|.+.+..|
T Consensus 151 i~~Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~ 200 (207)
T 3u5n_A 151 IFKNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEI 200 (207)
T ss_dssp HHHHHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 99999999999999999988753
No 271
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=98.78 E-value=1.9e-09 Score=126.26 Aligned_cols=86 Identities=16% Similarity=0.269 Sum_probs=78.8
Q ss_pred ccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHH
Q 048801 1629 RKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWF 1708 (1715)
Q Consensus 1629 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~ 1708 (1715)
..+....|..+++....++|...+..||||+||++||++++|+++++++.||++|++||.+||.++++|..+|+.|.+.|
T Consensus 61 ~~~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~~ 140 (292)
T 3aad_A 61 DLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLC 140 (292)
T ss_dssp SSTTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHHHTHHHHTT
T ss_pred hCCcchhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 34667778888877788999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhhc
Q 048801 1709 NRTLNK 1714 (1715)
Q Consensus 1709 ~~~i~~ 1714 (1715)
.+.+..
T Consensus 141 ~~~~~~ 146 (292)
T 3aad_A 141 DEKLKE 146 (292)
T ss_dssp TTTGGG
T ss_pred Hhhhhc
Confidence 877654
No 272
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.77 E-value=8.6e-08 Score=112.34 Aligned_cols=264 Identities=12% Similarity=0.033 Sum_probs=164.0
Q ss_pred EEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceec
Q 048801 290 DLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIY 369 (1715)
Q Consensus 290 sLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~ 369 (1715)
++.+..++. |..++.++.|..|| .+++.+.....+...+.++.+.+++ .|..++.+ |..+|. +++....+.
T Consensus 24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g----~l~v~t~~--l~~~d~-~g~~~~~~~ 94 (330)
T 3hxj_A 24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDG----TIYFGSDK--VYAINP-DGTEKWRFD 94 (330)
T ss_dssp CCEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTT----EECCSSCE--EEEECC-CGGGGGGSC
T ss_pred CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCC----cEEEecCc--EEEECC-CCcEEEEEE
Confidence 345555564 56667788999999 8888766555444556777777766 46666655 888886 554433321
Q ss_pred CCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC
Q 048801 370 LPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN 449 (1715)
Q Consensus 370 ~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~ 449 (1715)
... ......++. +..|.+++.++.|..+|.. ++. ......+..
T Consensus 95 ~~~-------------------------~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~---------~~~~~~~~~ 137 (330)
T 3hxj_A 95 TKK-------------------------AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE---------KWRFKTKKA 137 (330)
T ss_dssp C------------------------------CCEEEE--TTEEEEECTTSEEEEECTT-SCE---------EEEEECSSC
T ss_pred CCC-------------------------CcccCceEE--CCEEEEEecCCEEEEEcCC-CCE---------EEEEcCCCc
Confidence 110 001112222 4456677778999999986 421 222222333
Q ss_pred CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCC
Q 048801 450 DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLP 529 (1715)
Q Consensus 450 ~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~ 529 (1715)
.+.++...++ ..|..++.++.|..+|.. +......
T Consensus 138 ~~~~~~~~~~---------------------------g~l~vgt~~~~l~~~d~~-g~~~~~~----------------- 172 (330)
T 3hxj_A 138 IYATPIVSED---------------------------GTIYVGSNDNYLYAINPD-GTEKWRF----------------- 172 (330)
T ss_dssp CCSCCEECTT---------------------------SCEEEECTTSEEEEECTT-SCEEEEE-----------------
T ss_pred eeeeeEEcCC---------------------------CEEEEEcCCCEEEEECCC-CCEeEEE-----------------
Confidence 3444444433 357778888999999876 4321110
Q ss_pred CCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCC
Q 048801 530 PQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYD 609 (1715)
Q Consensus 530 ~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~D 609 (1715)
......+.++.+.++|.+++ ++ +.|..|| .+++.+..+......+.++...+ ++.+. .++.+
T Consensus 173 ------------~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~-~g~l~-v~t~~ 234 (330)
T 3hxj_A 173 ------------KTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISE-DGTIY-VTSLD 234 (330)
T ss_dssp ------------ECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECT-TSCEE-EEETT
T ss_pred ------------ecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECC-CCeEE-EEcCC
Confidence 01122355567777777555 44 7899999 78888888776667788888877 44544 46677
Q ss_pred CcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 610 GRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 610 GtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
+.|..++ .+++.+..+......+..+.+.++|. |.+++.+|.|+.++. +|+..
T Consensus 235 ~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~ 287 (330)
T 3hxj_A 235 GHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEK 287 (330)
T ss_dssp TEEEEEC-TTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEE
T ss_pred CeEEEEC-CCCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEE
Confidence 8888887 47777777765444344556666664 666778889999996 66544
No 273
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.77 E-value=2.8e-07 Score=121.06 Aligned_cols=158 Identities=12% Similarity=0.083 Sum_probs=100.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecCC--CCCeEEEEECC---CCCEEEEEe-----CCCeeEEEECCCCCceEEEe
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLASCRGH--EGDITDLAVSS---NNTLVASAS-----NDFVIRVWRLPDGLPISVLR 324 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~tL~gH--s~~VtsLafSp---Dg~lLASGS-----~DGtIrVWDl~tg~~l~~L~ 324 (1715)
+..|++++.|+.|..+|..+|+.+-.+... ......+..+| ++..++..+ .+|.|+.||..+|+.+..+.
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 568888999999999999999998776542 11111111122 454444322 37899999999999988775
Q ss_pred CCC-------------------------------CCeEEEEecCCCCcceEEEEecCCCc-------------------E
Q 048801 325 GHT-------------------------------GAVTAIAFSPRPSAIYQLLSSSDDGT-------------------C 354 (1715)
Q Consensus 325 gH~-------------------------------~~VtsLafSPdg~~~~~LaSgS~DGt-------------------V 354 (1715)
... .....+++.|+.. +|+.+..++. |
T Consensus 201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~---~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN---LLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT---EEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC---EEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 210 0112577888776 6777776653 9
Q ss_pred EEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCC---eEEEecCCCeEEEEeCCCCCc
Q 048801 355 RIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT---VFVTGSSDTFARVWSACKSSV 431 (1715)
Q Consensus 355 rIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~---~LatGs~DG~IrVWDl~t~~~ 431 (1715)
..||..+|+.+..+........ .......+....+..+|+ .|+.++.+|.++++|..++++
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~w----------------d~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAW----------------DYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL 341 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCS----------------CCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred EEEEccCCceeEeeecCCcccc----------------cccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence 9999999987766543211000 000011122223333665 788999999999999998865
No 274
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.74 E-value=2.1e-06 Score=112.38 Aligned_cols=354 Identities=10% Similarity=0.055 Sum_probs=194.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCC----------e-EEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEE
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLASCRGHEGD----------I-TDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVL 323 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~----------V-tsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L 323 (1715)
+..|++++.++.|..+|..+|+.+-.+...... + ..+++ .+..|+.++.|+.|..+|..+|+.+..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 557777888899999999999999887543211 0 11223 3567888889999999999999998877
Q ss_pred eCCC----CCeEE-EEecCCCCcceEEEEecC------CCcEEEEecCCCCCcceecCCC-CCCCc-cCcc---CCCCCC
Q 048801 324 RGHT----GAVTA-IAFSPRPSAIYQLLSSSD------DGTCRIWDARYSQYSPRIYLPK-PPDAI-TGKS---NVPSNN 387 (1715)
Q Consensus 324 ~gH~----~~Vts-LafSPdg~~~~~LaSgS~------DGtVrIWDl~tg~~l~~i~~~~-~~~~i-~g~~---~~~~~~ 387 (1715)
.... ..+.+ ..+. ++ .++++.. +|.|..+|..+|+.+..+.... .+... .... ......
T Consensus 144 ~~~~~~~~~~~~~~P~v~-~~----~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVV-KG----KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp ECSCTTSSCBCCSCCEEE-TT----EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred ccCCCCCcceecCCCEEE-CC----EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 6421 11111 1111 22 3444432 5899999999999887765421 11000 0000 000000
Q ss_pred C-CCCCCCCCCcceeEEEEccCCCeEEEecCCCe-------------------EEEEeCCCCCccCCCCCceeeeeec--
Q 048801 388 G-PSSSNGLQSHQILCCAYNANGTVFVTGSSDTF-------------------ARVWSACKSSVEDSEQPIHELDVLS-- 445 (1715)
Q Consensus 388 ~-~~~~~~~h~~~VtslafSpdG~~LatGs~DG~-------------------IrVWDl~t~~~~~~~~~~~~l~~l~-- 445 (1715)
. ..............+++.+++.++++++.++. |..+|..+++. +..+.
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~---------~W~~~~~ 289 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL---------AWHYQVT 289 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE---------EEEEESS
T ss_pred ccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce---------eeEeecC
Confidence 0 00000011222345788888888888877663 88888887653 11111
Q ss_pred CCC-------CCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccc----c
Q 048801 446 GHE-------NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVG----R 514 (1715)
Q Consensus 446 gH~-------~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~----~ 514 (1715)
.|. .++....+..++. ....++.++.+|.+.++|..+++.+.... .
T Consensus 290 ~~~~wd~~~~~~~~~~d~~~~G~-----------------------~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~ 346 (668)
T 1kv9_A 290 PGDSWDFTATQQITLAELNIDGK-----------------------PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVT 346 (668)
T ss_dssp TTCCSCCCCCSCEEEEEEEETTE-----------------------EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCC
T ss_pred CCccccccCCCCcEEEEeccCCc-----------------------EEEEEEEECCCCEEEEEECCCCCEeccccccccc
Confidence 121 1111111111110 01368899999999999999988653211 1
Q ss_pred ccccccccCCCCCCCCC-CCCCCCcccccCCCC--CeeEEEeCCCCCEEEEEe---------------------------
Q 048801 515 WTRAYHLKVPPPPLPPQ-PPRGGPRQRLLPTPR--GVNMIVWSLDNRFVLAAI--------------------------- 564 (1715)
Q Consensus 515 ~~~~~~l~~~~~~~~~~-~~~g~~~~~l~~h~~--~VtslafSPDG~~LaTgs--------------------------- 564 (1715)
|...+......+..... ...+..........+ .-..++++|+..++++..
T Consensus 347 w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 426 (668)
T 1kv9_A 347 WAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFA 426 (668)
T ss_dssp SEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGG
T ss_pred cccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccc
Confidence 22211110000000000 000000000111100 112367777766655421
Q ss_pred ---------cCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceE-E
Q 048801 565 ---------MDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKL-V 634 (1715)
Q Consensus 565 ---------~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V-~ 634 (1715)
.+|.|..||+.+|+.+..+..+.. +....+.. .+.+++.++.||.|++||..+|+.+..+....... .
T Consensus 427 ~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~ 504 (668)
T 1kv9_A 427 DATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH-WNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAA 504 (668)
T ss_dssp GCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred ccCCCCCCCccceEEEEeCCCCcEEEEccCCCC-CcCceeEe-CCCEEEEECCcccchhhhhhcChhheEecCCCCcccC
Confidence 247899999999999988764432 22223333 44567778999999999999999999998653221 2
Q ss_pred EEEEcCCCC-EEEEEe
Q 048801 635 DGKFSPDGT-SIVLSD 649 (1715)
Q Consensus 635 svafSPDG~-~LAsgs 649 (1715)
-+.+..+|+ ++++++
T Consensus 505 p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 505 PMTFELAGRQYVAIMA 520 (668)
T ss_dssp CEEEEETTEEEEEEEE
T ss_pred ceEEEECCEEEEEEEe
Confidence 344556777 444443
No 275
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=98.73 E-value=6.7e-09 Score=122.38 Aligned_cols=83 Identities=12% Similarity=0.131 Sum_probs=76.1
Q ss_pred chhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHH
Q 048801 1631 QDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNR 1710 (1715)
Q Consensus 1631 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~ 1710 (1715)
..+..|..+......++|...+..||||+||++|| ..||.+++++++||++|++||.+||++++.|.++|+.|.+.|.+
T Consensus 46 ~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl-~~y~~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~~~~ 124 (311)
T 2r0y_A 46 DIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD-YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEF 124 (311)
T ss_dssp HHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC-CCSTTHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH
T ss_pred chhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH-hcccCCHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Confidence 45677888888888899999999999999999999 77878999999999999999999999999999999999999998
Q ss_pred Hhhc
Q 048801 1711 TLNK 1714 (1715)
Q Consensus 1711 ~i~~ 1714 (1715)
.+.+
T Consensus 125 ~~~k 128 (311)
T 2r0y_A 125 EVLK 128 (311)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7643
No 276
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=98.72 E-value=9.3e-09 Score=120.50 Aligned_cols=86 Identities=21% Similarity=0.279 Sum_probs=79.4
Q ss_pred ccchhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHH
Q 048801 1629 RKQDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWF 1708 (1715)
Q Consensus 1629 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~ 1708 (1715)
..+....|..+++....++|...+..|||++||++||++++|.+++++..||++|++||.+||.+++.|..+|+.|.+.|
T Consensus 184 ~~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L~~~~ 263 (292)
T 3aad_A 184 AVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVC 263 (292)
T ss_dssp GSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH
T ss_pred cCcchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 34566778888877788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc
Q 048801 1709 NRTLNK 1714 (1715)
Q Consensus 1709 ~~~i~~ 1714 (1715)
.+.+..
T Consensus 264 ~~~~~~ 269 (292)
T 3aad_A 264 YQTLTE 269 (292)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 277
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=4.9e-05 Score=101.08 Aligned_cols=331 Identities=10% Similarity=0.053 Sum_probs=199.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEec-------CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR-------GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD 316 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~-------gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t 316 (1715)
..|.++..+++|.+.+. +.+ -|.+||..+++...... .....|.+|...++|.+ ..|+..+-|.+++..+
T Consensus 211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKL-WIATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEE-EEEESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCE-EEEeCCCCeEEECCCC
Confidence 56999999998876554 444 58889987765432211 12457999999888864 4566645688899876
Q ss_pred CCceEEEe--------------CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccC
Q 048801 317 GLPISVLR--------------GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSN 382 (1715)
Q Consensus 317 g~~l~~L~--------------gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~ 382 (1715)
+....... -....|.+|...+++. |..|+.++-|..++........ +... +..
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~----lWigt~~~Gl~~~~~~~~~~~~-~~~~-~~~------- 354 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN----IWIGTWGGGINFISNAPPTFHT-WSYS-PTQ------- 354 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECSSCC----EEEEEBSSCEEEECSSCCSCEE-EC-----C-------
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC----EEEEecCCeEEEeCCCCCccee-eccC-ccc-------
Confidence 65332111 1245789999988874 6677767778889876554321 1100 000
Q ss_pred CCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccc
Q 048801 383 VPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVA 462 (1715)
Q Consensus 383 ~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~a 462 (1715)
..........|.+++..++|.+. +|+.++-|.+|+..++..... ..........|.++...+++
T Consensus 355 -------~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~------~~~~~~~~~~v~~i~~d~~g-- 418 (781)
T 3v9f_A 355 -------MNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYN------KENRELLSNSVLCSLKDSEG-- 418 (781)
T ss_dssp -------CCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----------CCCSBEEEEEECTTS--
T ss_pred -------cccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEc------cCCCCCCCcceEEEEECCCC--
Confidence 00011224568999998888754 566566688888765321000 00001234567777776543
Q ss_pred ccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccccc
Q 048801 463 SRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLL 542 (1715)
Q Consensus 463 s~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~ 542 (1715)
.|..|+.++-|.+++..+++... +. . . .
T Consensus 419 -------------------------~lWigt~~~Gl~~~~~~~~~~~~--------~~--~-----------~------~ 446 (781)
T 3v9f_A 419 -------------------------NLWFGTYLGNISYYNTRLKKFQI--------IE--L-----------E------K 446 (781)
T ss_dssp -------------------------CEEEEETTEEEEEECSSSCEEEE--------CC--S-----------T------T
T ss_pred -------------------------CEEEEeccCCEEEEcCCCCcEEE--------ec--c-----------C------C
Confidence 56667777778888876543110 00 0 0 0
Q ss_pred CCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecC-----CCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 543 PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGH-----SASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 543 ~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH-----~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
.....|.++...++|.+.+ |+. +-|.+|+..+++........ ...|.++...+ ++.+.+ |+.++-|..||.
T Consensus 447 ~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~ 522 (781)
T 3v9f_A 447 NELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTP 522 (781)
T ss_dssp TCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECT
T ss_pred CCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeC
Confidence 1234688999988887555 555 56889998877654433222 46789998877 555554 444344888987
Q ss_pred CCCceEEEEEc----ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Q 048801 618 WEGTPIRIYEI----GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGES 664 (1715)
Q Consensus 618 ~tgk~l~tl~~----h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~ 664 (1715)
.+++. ..+.. ....|.++...++|.+.+++. .|.|..|+..+++.
T Consensus 523 ~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~ 571 (781)
T 3v9f_A 523 DMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY 571 (781)
T ss_dssp TCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC
T ss_pred CCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE
Confidence 66543 33431 134688999999998666554 66658888877653
No 278
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.65 E-value=9.4e-05 Score=98.31 Aligned_cols=344 Identities=10% Similarity=0.007 Sum_probs=200.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEec-------CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCC
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR-------GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPD 316 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~-------gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~t 316 (1715)
..|.++...++|.+. .|+.++-|..|+..+++...... -....|.+|...++|.+.+. +.. -|.+||..+
T Consensus 163 ~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~ 239 (781)
T 3v9f_A 163 EQTWTATEAEDGKLY-IGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIG-TSK-GLALFNANT 239 (781)
T ss_dssp CCEEEEEEEETTEEE-EEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEE-ETT-EEEEEETTT
T ss_pred cceEEEEECCCCCEE-EEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEE-eCC-cHheECCCC
Confidence 568899888887554 46666568889988765433211 11357999999988876654 444 588899876
Q ss_pred CCceEEEe-------CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCC
Q 048801 317 GLPISVLR-------GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGP 389 (1715)
Q Consensus 317 g~~l~~L~-------gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~ 389 (1715)
+....... .....|.+|...+++ .|..|+..+-|.++|..++........ ....+ ...
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g----~lWigt~~~Gl~~~~~~~~~~~~~~~~--~f~~~---------~~~ 304 (781)
T 3v9f_A 240 ETFTNFHNNPGNIHGALSSYIFSIKQLKDN----KLWIATELNGIMILDLQQNQFLLPEQI--RFEFI---------REG 304 (781)
T ss_dssp TEEEC-----------CCCCEEEEEECTTS----EEEEEESSSCEEEEETTCC-----------CEEE---------CBC
T ss_pred CcEEEEEcCCCccccccCceEEEEEECCCC----CEEEEeCCCCeEEECCCCCeeeeeecc--ccccc---------cCC
Confidence 64332211 123568999988877 466677655688898876553211100 00000 000
Q ss_pred CCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccc
Q 048801 390 SSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSD 469 (1715)
Q Consensus 390 ~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~ 469 (1715)
..........|.++....+|. |.+|+.++-|..|+..+......................|.++...+++
T Consensus 305 ~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g--------- 374 (781)
T 3v9f_A 305 DNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQG--------- 374 (781)
T ss_dssp SSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTS---------
T ss_pred CCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCC---------
Confidence 001123355699999999887 4556666778888876543210000000000001123467777776654
Q ss_pred cccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCee
Q 048801 470 AFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVN 549 (1715)
Q Consensus 470 ~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vt 549 (1715)
.|..|+.++-|.+|+..++.... +. .. .......|.
T Consensus 375 ------------------~lWigt~~~Gl~~~~~~~~~~~~--------~~---~~---------------~~~~~~~v~ 410 (781)
T 3v9f_A 375 ------------------KLWIGTDGGGINVFENGKRVAIY--------NK---EN---------------RELLSNSVL 410 (781)
T ss_dssp ------------------CEEEEEBSSCEEEEETTEEEEEC--------C-----------------------CCCSBEE
T ss_pred ------------------CEEEEeCCCcEEEEECCCCeEEE--------cc---CC---------------CCCCCcceE
Confidence 56677767778888876432100 00 00 011235688
Q ss_pred EEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe--cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEE
Q 048801 550 MIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT--GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 550 slafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~--gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~ 627 (1715)
+++..++|.+.+ |+.++-|.+++..+++...... .....|.++...+ ++.+.+ |+. +-|.+||..+++......
T Consensus 411 ~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~ 486 (781)
T 3v9f_A 411 CSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASKKVIHHYD 486 (781)
T ss_dssp EEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSSSCCEEEC
T ss_pred EEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCCeEEeccc
Confidence 999888887555 7776779999987775433221 1346788988876 555544 445 558999988776544332
Q ss_pred cc-----cceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc
Q 048801 628 IG-----RFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGES 664 (1715)
Q Consensus 628 ~h-----~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~ 664 (1715)
.. ...|.++...++|.+.+.+. .+.|..|+..+++.
T Consensus 487 ~~~~~~~~~~i~~i~~d~~g~lWigt~-~~Gl~~~~~~~~~~ 527 (781)
T 3v9f_A 487 TSNSQLLENFVRSIAQDSEGRFWIGTF-GGGVGIYTPDMQLV 527 (781)
T ss_dssp TTTSSCSCSCEEEEEECTTCCEEEEES-SSCEEEECTTCCEE
T ss_pred CcccccccceeEEEEEcCCCCEEEEEc-CCCEEEEeCCCCeE
Confidence 22 35688999999998666544 34477888766643
No 279
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=98.63 E-value=1.7e-08 Score=121.59 Aligned_cols=82 Identities=11% Similarity=0.119 Sum_probs=75.3
Q ss_pred chhhhhHHHHHHhhhccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHH
Q 048801 1631 QDYYGIQRLNEAAQKLDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNR 1710 (1715)
Q Consensus 1631 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~ 1710 (1715)
..+..|..+......++|+..+..||||+||++|| +.||.+++++++||++|++||.+||.+++.|.++|+.|.+.|.+
T Consensus 96 ~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl-~~y~~~~~~f~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~~~~ 174 (361)
T 2r10_A 96 DIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD-YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEF 174 (361)
T ss_dssp HHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC-CCSTTHHHHHHHHHHHHHHHHHHHBCSSSHHHHHHHHHHHHHHH
T ss_pred cccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh-hccCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 44566888888888899999999999999999999 78888999999999999999999999999999999999999998
Q ss_pred Hhh
Q 048801 1711 TLN 1713 (1715)
Q Consensus 1711 ~i~ 1713 (1715)
.+.
T Consensus 175 ~~~ 177 (361)
T 2r10_A 175 EVL 177 (361)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 280
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.60 E-value=5.3e-07 Score=113.98 Aligned_cols=295 Identities=11% Similarity=0.070 Sum_probs=181.5
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEec-----------------------------------C----CCCCeEEEEECC---
Q 048801 258 VITGSDDRLVKIWSMETAFCLASCR-----------------------------------G----HEGDITDLAVSS--- 295 (1715)
Q Consensus 258 LaTGS~DGtIrIWDl~tgk~l~tL~-----------------------------------g----Hs~~VtsLafSp--- 295 (1715)
+.+|+..|.|+|+-+-+++.+..+. | ..+.....++|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 5678888999999888887776542 1 012333456665
Q ss_pred --CCCEEEEEeC-CCeeEEEECCCCCceEEEeC-CCCCeEEEEe-c-CCCCcceEEEEec------------------CC
Q 048801 296 --NNTLVASASN-DFVIRVWRLPDGLPISVLRG-HTGAVTAIAF-S-PRPSAIYQLLSSS------------------DD 351 (1715)
Q Consensus 296 --Dg~lLASGS~-DGtIrVWDl~tg~~l~~L~g-H~~~VtsLaf-S-Pdg~~~~~LaSgS------------------~D 351 (1715)
||++|+.... ++.|.+.|+.+.++...+.- ....+..+++ + |++. ++++++ .+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~---~v~~~~~~~~p~~~dg~~l~~~~~~~ 174 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSN---YVFCNGEDETPLVNDGTNMEDVANYV 174 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCS---EEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCc---EEEEecccccccCCCCcccccccccC
Confidence 8888887765 55799999999998885542 2345788888 4 8887 566663 34
Q ss_pred CcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeE-EEEeCCCCC
Q 048801 352 GTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFA-RVWSACKSS 430 (1715)
Q Consensus 352 GtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~I-rVWDl~t~~ 430 (1715)
+.|.++|..+.+...++.... ....++++|+|+++++.+.+..- ...+..+
T Consensus 175 ~~vtvID~~t~~v~~qI~Vgg--------------------------~pd~~~~spdGk~~~vt~~~se~~~~i~~~~-- 226 (595)
T 1fwx_A 175 NVFTAVDADKWEVAWQVLVSG--------------------------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMT-- 226 (595)
T ss_dssp EEEEEEETTTTEEEEEEEESS--------------------------CCCCEEECSSSSEEEEEESCTTCCSSHHHHT--
T ss_pred ceEEEEECCCCeEEEEEEeCC--------------------------CccceEECCCCCEEEEEecCcccCcchhhcc--
Confidence 678899998877666654422 12457799999998888765310 0000000
Q ss_pred ccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCc
Q 048801 431 VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHG 510 (1715)
Q Consensus 431 ~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~ 510 (1715)
......+.+-.-. ........ ++.... +.|.+.|..+.+.
T Consensus 227 -----------------~~~~d~v~V~~~~-----~~~~~v~~------------Gk~~~i----~~V~VID~~~~~~-- 266 (595)
T 1fwx_A 227 -----------------AAEMDHIVVFNIA-----EIEKAIAA------------GDYQEL----NGVKVVDGRKEAS-- 266 (595)
T ss_dssp -----------------CCSEEEEEEEEHH-----HHHHHHHH------------TCSEEE----TTEEEEECSGGGC--
T ss_pred -----------------ccccceEEEeecc-----ceeEeccC------------CCeeEE----CcEEEEeCcccCC--
Confidence 0111111110000 00000000 011111 4588888876210
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCc-----------
Q 048801 511 KVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGS----------- 578 (1715)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~----------- 578 (1715)
........-.....++.++|||+++++++ .+.+|.++|+.+.+
T Consensus 267 -------------------------~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~ 321 (595)
T 1fwx_A 267 -------------------------SLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 321 (595)
T ss_dssp -------------------------CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred -------------------------ceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence 00000111123457799999999887765 57799999998653
Q ss_pred -eEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC----------CceEEEEEcccceE--E---EEEEcCCC
Q 048801 579 -LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE----------GTPIRIYEIGRFKL--V---DGKFSPDG 642 (1715)
Q Consensus 579 -~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t----------gk~l~tl~~h~~~V--~---svafSPDG 642 (1715)
.+..+. -......++|+|++ ...++...|+.|.+||+.+ ...+..+..|..+- . .+.++|||
T Consensus 322 ~v~~~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DG 399 (595)
T 1fwx_A 322 AVVAEPE-LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATN 399 (595)
T ss_dssp GEEECCB-CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCS
T ss_pred ceEEEcC-CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCC
Confidence 233333 23446899999955 7777788899999999977 56778887665432 1 23568999
Q ss_pred CEEEEEeC
Q 048801 643 TSIVLSDD 650 (1715)
Q Consensus 643 ~~LAsgs~ 650 (1715)
++|+++..
T Consensus 400 k~l~~~Nk 407 (595)
T 1fwx_A 400 DWLVCLSK 407 (595)
T ss_dssp SEEEEEES
T ss_pred CEEEEcCC
Confidence 99998743
No 281
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.55 E-value=3.2e-06 Score=110.61 Aligned_cols=297 Identities=11% Similarity=0.128 Sum_probs=168.1
Q ss_pred CCEEEEEeCCCeeEEEECCCCCceEEEeCCCCC----------e-EEEEecCCCCcceEEEEecCCCcEEEEecCCCCCc
Q 048801 297 NTLVASASNDFVIRVWRLPDGLPISVLRGHTGA----------V-TAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS 365 (1715)
Q Consensus 297 g~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~----------V-tsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l 365 (1715)
+..|++++.++.|..+|..+|+.+..+...... + ..+++. +. .|+.++.|+.|..+|..+|+.+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~v~v~~~dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--GD---KVYVGTLDGRLIALDAKTGKAI 140 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--BT---EEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE--CC---EEEEEcCCCEEEEEECCCCCEe
Confidence 456777778899999999999998887533211 0 112222 22 6788889999999999999987
Q ss_pred ceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC------CCeEEEEeCCCCCccCCCCCc-
Q 048801 366 PRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS------DTFARVWSACKSSVEDSEQPI- 438 (1715)
Q Consensus 366 ~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~------DG~IrVWDl~t~~~~~~~~~~- 438 (1715)
............ ......+ + .++ .++++.. +|.|..||..+++........
T Consensus 141 W~~~~~~~~~~~----------------~~~~~P~--v---~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~ 198 (668)
T 1kv9_A 141 WSQQTTDPAKPY----------------SITGAPR--V---VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVP 198 (668)
T ss_dssp EEEECSCTTSSC----------------BCCSCCE--E---ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSC
T ss_pred eeeccCCCCCcc----------------eecCCCE--E---ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccC
Confidence 765442111000 0001111 1 144 3444432 589999999887642111000
Q ss_pred -eeeee------------e--------cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCC-
Q 048801 439 -HELDV------------L--------SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDG- 496 (1715)
Q Consensus 439 -~~l~~------------l--------~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DG- 496 (1715)
..... . .++......+++.+. .+.++.++.++
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~--------------------------~~~vy~~~~~g~ 252 (668)
T 1kv9_A 199 GDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPE--------------------------LDLLYVGTGNGS 252 (668)
T ss_dssp CCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETT--------------------------TTEEEEECCCEE
T ss_pred CCCCccccccccccccccCCccceeeeCCCCccccceEEcCC--------------------------CCEEEEeCCCCC
Confidence 00000 0 000000111222222 24566666555
Q ss_pred ------------------eEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCC
Q 048801 497 ------------------SAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNR 558 (1715)
Q Consensus 497 ------------------sIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~ 558 (1715)
.|..+|..+++..-.. ... .. ..... .....+....+..+|+
T Consensus 253 ~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~-----~~~----~~----------~~wd~-~~~~~~~~~d~~~~G~ 312 (668)
T 1kv9_A 253 PWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHY-----QVT----PG----------DSWDF-TATQQITLAELNIDGK 312 (668)
T ss_dssp SSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE-----ESS----TT----------CCSCC-CCCSCEEEEEEEETTE
T ss_pred ccccCCCCCCCCCceeeeeEEEEcCCCCceeeEe-----ecC----CC----------ccccc-cCCCCcEEEEeccCCc
Confidence 3888888887633221 100 00 00000 0011222222334665
Q ss_pred ---EEEEEecCCeEEEEECCCCceEEEEecCCC------------Ce------------------------EEEEEccCC
Q 048801 559 ---FVLAAIMDCRICVWNAVDGSLVHSLTGHSA------------SS------------------------YVLDVHPFN 599 (1715)
Q Consensus 559 ---~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~------------~V------------------------~sLafSP~d 599 (1715)
.|++++.+|.++++|..+|+++........ ++ ..++++|..
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~ 392 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence 688899999999999999998855432110 00 125677744
Q ss_pred CcEEEEE-----------------------------------eCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCE
Q 048801 600 PRIAMSA-----------------------------------GYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTS 644 (1715)
Q Consensus 600 g~lLaSg-----------------------------------s~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~ 644 (1715)
+.+++.. ..+|.|..||+.+|+.+..+..+. ++....+...|.+
T Consensus 393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~ 471 (668)
T 1kv9_A 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNL 471 (668)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTE
T ss_pred CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCE
Confidence 4433311 134889999999999998877432 3344455667889
Q ss_pred EEEEeCCCeEEEEECCCCccccc
Q 048801 645 IVLSDDVGQIYLLNTGQGESQKD 667 (1715)
Q Consensus 645 LAsgs~DG~I~IWdl~tGe~~k~ 667 (1715)
|++++.||.|++||..+|+.+..
T Consensus 472 vf~g~~dg~l~a~d~~tG~~l~~ 494 (668)
T 1kv9_A 472 VFQGTAAGQMHAYSADKGEALWQ 494 (668)
T ss_dssp EEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEECCcccchhhhhhcChhheE
Confidence 99999999999999999987643
No 282
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.48 E-value=4.2e-08 Score=119.05 Aligned_cols=186 Identities=12% Similarity=0.065 Sum_probs=100.4
Q ss_pred CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCc
Q 048801 408 NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHD 487 (1715)
Q Consensus 408 dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~ 487 (1715)
++..|++++.||.|+.||..+++. +..+.. +.+.+..+..+ +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~---------~W~~~~--~~~~s~p~~~~--------------------------g~ 50 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI---------KWTLKE--DPVLQVPTHVE--------------------------EP 50 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE---------EEEEEC--CCSCCCC-------------------------------C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE---------EEEecC--CCceecceEcC--------------------------CC
Confidence 567888999999999999988653 223322 23322222222 24
Q ss_pred eEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCC
Q 048801 488 NIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDC 567 (1715)
Q Consensus 488 ~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DG 567 (1715)
.+++++.||.|..||..+++..... .+.. .... ...+ ++. ++..|++|+.++
T Consensus 51 ~~v~~s~dg~l~a~d~~tG~~~w~~-----~~~~-----------------~~~~-~~sp----~~~-~~~~v~~g~~dg 102 (369)
T 2hz6_A 51 AFLPDPNDGSLYTLGSKNNEGLTKL-----PFTI-----------------PELV-QASP----CRS-SDGILYMGKKQD 102 (369)
T ss_dssp CEEECTTTCCEEEC-----CCSEEC-----SCCH-----------------HHHH-TTCS----CC------CCCCEEEE
T ss_pred EEEEeCCCCEEEEEECCCCceeeee-----eccC-----------------cccc-ccCc----eEe-cCCEEEEEeCCC
Confidence 6777889999999999876532211 0000 0000 0000 111 344677788899
Q ss_pred eEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCC---CE
Q 048801 568 RICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDG---TS 644 (1715)
Q Consensus 568 tI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG---~~ 644 (1715)
.|+.||..+|+.+..+..+. .+.++| ++..+++++.||.|+.||..+|+.+..+..+ .....+++.++ ..
T Consensus 103 ~v~a~D~~tG~~~w~~~~~~----~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~--~~~~~~~~~~~~~~~~ 175 (369)
T 2hz6_A 103 IWYVIDLLTGEKQQTLSSAF----ADSLSP-STSLLYLGRTEYTITMYDTKTRELRWNATYF--DYAASLPEDDVDYKMS 175 (369)
T ss_dssp EEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE--EECCBCCCCCTTCCCC
T ss_pred EEEEEECCCCcEEEEecCCC----cccccc-cCCEEEEEecCCEEEEEECCCCCEEEeEecc--cccCccccCCccccce
Confidence 99999999999998887654 234567 5567778889999999999999988776532 12233445543 56
Q ss_pred EEEEeCCCeEEEEECCCCccc
Q 048801 645 IVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 645 LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
+++++.+|.|+.||..+|+.+
T Consensus 176 v~~~~~dg~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 176 HFVSNGDGLVVTVDSESGDVL 196 (369)
T ss_dssp EEEEETSCEEEEECTTTCCEE
T ss_pred EEEECCCCEEEEEECCCCcEE
Confidence 777889999999999999764
No 283
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.44 E-value=4.1e-05 Score=98.68 Aligned_cols=352 Identities=11% Similarity=0.031 Sum_probs=183.9
Q ss_pred CCEEEEEeC-CCcEEEEeC-CCCcEEEEecCCCCC-----------eEEEEECCCCCE----EEEEeCCCeeEEEECCCC
Q 048801 255 GRFVITGSD-DRLVKIWSM-ETAFCLASCRGHEGD-----------ITDLAVSSNNTL----VASASNDFVIRVWRLPDG 317 (1715)
Q Consensus 255 G~~LaTGS~-DGtIrIWDl-~tgk~l~tL~gHs~~-----------VtsLafSpDg~l----LASGS~DGtIrVWDl~tg 317 (1715)
+..|++++. ++.|.-+|. .+|+.+-.+...... ...++++|.+.. |+.++.|+.|..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456777777 899999999 899998877533211 123456443434 888889999999999999
Q ss_pred CceEEEeCCC----CCeEE-EEecCCCCcceEEEEec------CCCcEEEEecCCCCCcceecCCCCCCCc-cCc----c
Q 048801 318 LPISVLRGHT----GAVTA-IAFSPRPSAIYQLLSSS------DDGTCRIWDARYSQYSPRIYLPKPPDAI-TGK----S 381 (1715)
Q Consensus 318 ~~l~~L~gH~----~~Vts-LafSPdg~~~~~LaSgS------~DGtVrIWDl~tg~~l~~i~~~~~~~~i-~g~----~ 381 (1715)
+.+....... ..+++ ..+. ++ .+++++ .+|.|+.+|..+|+.+..+....+.... .+. .
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g----~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~ 216 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-KD----KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK 216 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-TT----EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred CEEEeecCCCCCccceeecCCEEE-CC----EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccc
Confidence 9987765322 01221 1111 33 455544 4899999999999987766543221000 000 0
Q ss_pred C---------CCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC----------------CeEEEEeCCCCCccCCCC
Q 048801 382 N---------VPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD----------------TFARVWSACKSSVEDSEQ 436 (1715)
Q Consensus 382 ~---------~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D----------------G~IrVWDl~t~~~~~~~~ 436 (1715)
. ...-...... ......-..+++.+...++..++.+ +.|..+|..+++....
T Consensus 217 ~~~~g~~~~g~~tw~g~~~~-~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~-- 293 (599)
T 1w6s_A 217 NPHYGQKGLGTGTWEGDAWK-IGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFG-- 293 (599)
T ss_dssp CGGGCCTTHHHHTSSTTGGG-GCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEE--
T ss_pred cccccccccccccCCCccee-cCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeE--
Confidence 0 0000000000 0000111245666776677766654 3677888877653110
Q ss_pred CceeeeeecCCC--------CCeeEEEEc-cCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCc
Q 048801 437 PIHELDVLSGHE--------NDVNYVQFS-GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 507 (1715)
Q Consensus 437 ~~~~l~~l~gH~--------~~V~sLafs-pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~ 507 (1715)
.....|. .++. +... .++. ....++.++.+|.+.++|..+++
T Consensus 294 -----~q~~~~d~wd~d~~~~p~l-~d~~~~~G~-----------------------~~~~v~~~~~~G~l~~lD~~tG~ 344 (599)
T 1w6s_A 294 -----YQKTPHDEWDYAGVNVMML-SEQKDKDGK-----------------------ARKLLTHPDRNGIVYTLDRTDGA 344 (599)
T ss_dssp -----EESSTTCSSCCCCCCCCEE-EEEECTTSC-----------------------EEEEEEEECTTSEEEEEETTTCC
T ss_pred -----eecCCCccccccCCCccEE-EeccccCCc-----------------------EEEEEEEECCCcEEEEEECCCCC
Confidence 1111121 1111 0000 1110 00467778999999999999887
Q ss_pred cCcccc-----cccccccccCCCCCCC---CC-CCCCCCcccccCCC--CCeeEEEeCCCCCEEEEEe------------
Q 048801 508 SHGKVG-----RWTRAYHLKVPPPPLP---PQ-PPRGGPRQRLLPTP--RGVNMIVWSLDNRFVLAAI------------ 564 (1715)
Q Consensus 508 ~~~~~~-----~~~~~~~l~~~~~~~~---~~-~~~g~~~~~l~~h~--~~VtslafSPDG~~LaTgs------------ 564 (1715)
.+.... .|.....+.. ..+.. .. ...........+.. ..-..++++|+..+|++..
T Consensus 345 ~lw~~~~~~~~~~~~~~~~~~-g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~ 423 (599)
T 1w6s_A 345 LVSANKLDDTVNVFKSVDLKT-GQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFML 423 (599)
T ss_dssp EEEEEESSTTCCSEEEECTTT-CCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCC
T ss_pred EeecccccCCcccccccccCC-CceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccc
Confidence 543321 0111010000 00000 00 00000000000000 1122456666655554421
Q ss_pred ---------------------------cCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 565 ---------------------------MDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 565 ---------------------------~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
..|.|..||+.+|+.+....... ++..-.+.. .+.+++.++.||.|+.||.
T Consensus 424 ~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agg~vf~gt~dg~l~A~D~ 501 (599)
T 1w6s_A 424 PYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF-AVWGGTMAT-AGDLVFYGTLDGYLKARDS 501 (599)
T ss_dssp CCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEET
T ss_pred cccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC-CccCcceEe-cCCEEEEECCCCeEEEEEC
Confidence 34789999999999988775221 111111112 3445566899999999999
Q ss_pred CCCceEEEEEcccceE-EEEEEcCCCCEEE
Q 048801 618 WEGTPIRIYEIGRFKL-VDGKFSPDGTSIV 646 (1715)
Q Consensus 618 ~tgk~l~tl~~h~~~V-~svafSPDG~~LA 646 (1715)
.+|+.+..+......+ .-+.+..+|++.+
T Consensus 502 ~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv 531 (599)
T 1w6s_A 502 DTGDLLWKFKIPSGAIGYPMTYTHKGTQYV 531 (599)
T ss_dssp TTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCCCEEEEeeCCCCcEeccEEEEeCCEEEE
Confidence 9999999998544322 2355667887544
No 284
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=98.43 E-value=3.4e-07 Score=94.78 Aligned_cols=67 Identities=21% Similarity=0.349 Sum_probs=62.2
Q ss_pred ccccccCCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHhhc
Q 048801 1646 LDYLNRFPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1646 ~~~~~~~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
++|.. ..|+++.+||+||++.-|++++.++.|+..||.||++||.++|.|-.-|..|.+.|.++..+
T Consensus 42 pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NAr~yN~e~S~IyeDAv~Lq~~f~~~r~e 108 (147)
T 3iu6_A 42 PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDE 108 (147)
T ss_dssp TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45655 78999999999999999999999999999999999999999999999999999999987654
No 285
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.42 E-value=2.4e-05 Score=100.53 Aligned_cols=351 Identities=10% Similarity=0.029 Sum_probs=183.0
Q ss_pred CCEEEEEeC-CCcEEEEeC-CCCcEEEEecCCCC-C---------e-EEEEECCCCCEEEEEeCCCeeEEEECCCCCceE
Q 048801 255 GRFVITGSD-DRLVKIWSM-ETAFCLASCRGHEG-D---------I-TDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS 321 (1715)
Q Consensus 255 G~~LaTGS~-DGtIrIWDl-~tgk~l~tL~gHs~-~---------V-tsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~ 321 (1715)
+..|+.++. ++.|.-+|. .+|+.+-.+..... . + ..+++ ++..|+.++.|+.|..+|..+|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 456667777 899999999 89999877653221 0 0 11233 35678888899999999999999987
Q ss_pred EEeCCC----CCeEE-EEecCCCCcceEEEEecC------CCcEEEEecCCCCCcceecCCCCCCCc-cCccCC----C-
Q 048801 322 VLRGHT----GAVTA-IAFSPRPSAIYQLLSSSD------DGTCRIWDARYSQYSPRIYLPKPPDAI-TGKSNV----P- 384 (1715)
Q Consensus 322 ~L~gH~----~~Vts-LafSPdg~~~~~LaSgS~------DGtVrIWDl~tg~~l~~i~~~~~~~~i-~g~~~~----~- 384 (1715)
...... ..+.+ ..+. ++ .+++++. +|.|..+|..+|+.+.++....+.... .+.... .
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~-~g----~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~ 214 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA-KD----TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHY 214 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE-TT----EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred EecCCCCCccceeccCCEEE-CC----EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccc
Confidence 765321 01211 1111 33 4455443 799999999999987766543221000 000000 0
Q ss_pred --------CCCCCCCCCCCCCcceeEEEEccCCCeEEEecCC----------------CeEEEEeCCCCCccCCCCCcee
Q 048801 385 --------SNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSD----------------TFARVWSACKSSVEDSEQPIHE 440 (1715)
Q Consensus 385 --------~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~D----------------G~IrVWDl~t~~~~~~~~~~~~ 440 (1715)
.-..... ..........+++.++...+..++.+ +.|..+|..+++....
T Consensus 215 G~~~~g~~~w~~~~~-~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~------ 287 (571)
T 2ad6_A 215 GQFGLGTKTWEGDAW-KIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWG------ 287 (571)
T ss_dssp CCSSHHHHTSSTTGG-GGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEE------
T ss_pred cccccccccCcccce-ecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEE------
Confidence 0000000 00000111235666665555555432 3578888877643110
Q ss_pred eeeecCCC--------CCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccc
Q 048801 441 LDVLSGHE--------NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKV 512 (1715)
Q Consensus 441 l~~l~gH~--------~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~ 512 (1715)
.....|. .++. +....++. ....++.++.+|.+.++|..+++.+...
T Consensus 288 -~~~~~~d~~d~~~~~~p~l-~~~~~~G~-----------------------~~~~v~~~~~~G~l~~lD~~tG~~~w~~ 342 (571)
T 2ad6_A 288 -YQKTPHDEWDFAGVNQMVL-TDQPVNGK-----------------------MTPLLSHIDRNGILYTLNRENGNLIVAE 342 (571)
T ss_dssp -EESSTTCSSCCCCCCCCEE-EEEEETTE-----------------------EEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred -ecCCCCcccccccCCCCEE-EecccCCc-----------------------EEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence 0111111 1111 00001110 0035778889999999999988754322
Q ss_pred c-----cccccccccCCCCCCCC---CC-CCCCCcccccCCCC--CeeEEEeCCCCCEEEEEe-----------------
Q 048801 513 G-----RWTRAYHLKVPPPPLPP---QP-PRGGPRQRLLPTPR--GVNMIVWSLDNRFVLAAI----------------- 564 (1715)
Q Consensus 513 ~-----~~~~~~~l~~~~~~~~~---~~-~~g~~~~~l~~h~~--~VtslafSPDG~~LaTgs----------------- 564 (1715)
. .|.....+.. ..+... .+ .............+ .-..++++|+..+|++.+
T Consensus 343 ~~~~~~~w~~~~d~~~-g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g 421 (571)
T 2ad6_A 343 KVDPAVNVFKKVDLKT-GTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAG 421 (571)
T ss_dssp ESSTTCCSEEEECTTT-CSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTT
T ss_pred cccCCccccccccccC-CceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccC
Confidence 1 1111110000 000000 00 00000000000000 113567888877776654
Q ss_pred --------------------cCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEE
Q 048801 565 --------------------MDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIR 624 (1715)
Q Consensus 565 --------------------~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~ 624 (1715)
.+|.|..||+.+|+.+..+.... .+.+..+...+ .+++.++.||.|++||..+|+.+.
T Consensus 422 ~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~g-g~v~~g~~dg~l~a~D~~tG~~lw 499 (571)
T 2ad6_A 422 QFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKG-GLVWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp SCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETT-TEEEEECTTSEEEEEETTTCCEEE
T ss_pred CccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEECC-CEEEEEcCCCeEEEEECCCCCEEE
Confidence 34789999999999988876432 22222222224 455568899999999999999999
Q ss_pred EEEcccceE-EEEEEcCCCCEEEE
Q 048801 625 IYEIGRFKL-VDGKFSPDGTSIVL 647 (1715)
Q Consensus 625 tl~~h~~~V-~svafSPDG~~LAs 647 (1715)
.+....... ..+.+..+|+.++.
T Consensus 500 ~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 500 NFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp EEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEeCCCCcEeeeEEEEECCEEEEE
Confidence 998543221 12345567765543
No 286
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.41 E-value=0.00014 Score=93.67 Aligned_cols=357 Identities=13% Similarity=0.052 Sum_probs=184.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCe---------EEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeC
Q 048801 255 GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDI---------TDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRG 325 (1715)
Q Consensus 255 G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~V---------tsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~g 325 (1715)
+..|+.++.++.|..+|..+|+.+-.+....... ..+++ .+..|+.++.|+.|..+|..+|+.+.....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 3455556654459999999999988775432210 11222 355788888999999999999999877653
Q ss_pred CCC----CeE-EEEecCC---CCcceEEEEec------CCCcEEEEecCCCCCcceecCCCCCCC-----------ccCc
Q 048801 326 HTG----AVT-AIAFSPR---PSAIYQLLSSS------DDGTCRIWDARYSQYSPRIYLPKPPDA-----------ITGK 380 (1715)
Q Consensus 326 H~~----~Vt-sLafSPd---g~~~~~LaSgS------~DGtVrIWDl~tg~~l~~i~~~~~~~~-----------i~g~ 380 (1715)
... .+. ...+..+ +.. .+++++ .+|.|..+|..+|+.+........... ..+.
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~--~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~ 223 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKV--LLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKA 223 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCE--EEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTC
T ss_pred CCCCcCcccccCCEEeCCCcCCcE--EEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccc
Confidence 321 111 1111122 211 344443 378999999999987765432110000 0000
Q ss_pred cCCCCC----CCCC-CCCCCCCcceeEEEEccCCCeEEEecC--------------------C----CeEEEEeCCCCCc
Q 048801 381 SNVPSN----NGPS-SSNGLQSHQILCCAYNANGTVFVTGSS--------------------D----TFARVWSACKSSV 431 (1715)
Q Consensus 381 ~~~~~~----~~~~-~~~~~h~~~VtslafSpdG~~LatGs~--------------------D----G~IrVWDl~t~~~ 431 (1715)
...... .... .........-..+++.|+..++.+++. | +.|..+|..+++.
T Consensus 224 ~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~ 303 (582)
T 1flg_A 224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV 303 (582)
T ss_dssp TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred ccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence 000000 0000 000001111235677777766665553 2 5788888877653
Q ss_pred cCCCCCceeeeeecCCCCC----eeE-EEEc---cCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEec
Q 048801 432 EDSEQPIHELDVLSGHEND----VNY-VQFS---GCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIP 503 (1715)
Q Consensus 432 ~~~~~~~~~l~~l~gH~~~----V~s-Lafs---pdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl 503 (1715)
... .....|... +.. +.+. .++. ....++.++.+|.+.++|.
T Consensus 304 ~W~-------~q~~~~d~wd~~~~~~p~l~~~~~~~G~-----------------------~~~~v~~~~~~G~l~~lD~ 353 (582)
T 1flg_A 304 KWF-------YQHTPNDAWDFSGNNELVLFDYKAKDGK-----------------------IVKATAHADRNGFFYVVDR 353 (582)
T ss_dssp EEE-------EESSTTCCSCCCCCCCCEEEEEECSSSC-----------------------EEEEEEEECTTSEEEEEET
T ss_pred EEE-------EeCCCCCcccccCCCCcEEEeeecCCCC-----------------------EEEEEEEECCCceEEEEEC
Confidence 111 111112110 000 0011 1110 0036888999999999999
Q ss_pred CCCccCccccc-----ccccccccCCCC----CCCCC-----CCCCCCcccccCCCC--CeeEEEeCCCCCEEEEEe---
Q 048801 504 RSRRSHGKVGR-----WTRAYHLKVPPP----PLPPQ-----PPRGGPRQRLLPTPR--GVNMIVWSLDNRFVLAAI--- 564 (1715)
Q Consensus 504 ~t~~~~~~~~~-----~~~~~~l~~~~~----~~~~~-----~~~g~~~~~l~~h~~--~VtslafSPDG~~LaTgs--- 564 (1715)
.+++.+..... |.....+....+ ..... ..............+ .-..++++|+..++++..
T Consensus 354 ~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~ 433 (582)
T 1flg_A 354 SNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHW 433 (582)
T ss_dssp TTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECE
T ss_pred CCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhc
Confidence 99875533211 111111000000 00000 000000000111111 123467777665555433
Q ss_pred ------------------------------cCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEE
Q 048801 565 ------------------------------MDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIV 614 (1715)
Q Consensus 565 ------------------------------~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~V 614 (1715)
.+|.|..||+.+|+.+.....+.. +..-.+.. .+.+++.|+.||.|+.
T Consensus 434 ~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~g~~dg~l~A 511 (582)
T 1flg_A 434 KEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT-AGNLVFTGTGDGYFKA 511 (582)
T ss_dssp EEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC-CCSCCEEE-TTTEEEEECTTSEEEE
T ss_pred ceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC-CcccceEe-CCCEEEEECCCCcEEE
Confidence 257899999999999887764322 21111112 2446667899999999
Q ss_pred EECCCCceEEEEEcccceEE-EEEEcCCCCEEEE
Q 048801 615 WDIWEGTPIRIYEIGRFKLV-DGKFSPDGTSIVL 647 (1715)
Q Consensus 615 WDl~tgk~l~tl~~h~~~V~-svafSPDG~~LAs 647 (1715)
||..+|+.+..+....+.+. -+.|..+|++.++
T Consensus 512 ~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 512 FDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EECCCCCEEEEecCCCCcccCceEEEECCEEEEE
Confidence 99999999999986543221 2567788875443
No 287
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.38 E-value=2.5e-05 Score=95.83 Aligned_cols=197 Identities=11% Similarity=0.001 Sum_probs=129.0
Q ss_pred CCCCEEEEEe-CCCcEEEEeCCCC----cEEEEec-------CCCCCeEEEEECCCCCEEEEEeCC------CeeEEEEC
Q 048801 253 RSGRFVITGS-DDRLVKIWSMETA----FCLASCR-------GHEGDITDLAVSSNNTLVASASND------FVIRVWRL 314 (1715)
Q Consensus 253 pDG~~LaTGS-~DGtIrIWDl~tg----k~l~tL~-------gHs~~VtsLafSpDg~lLASGS~D------GtIrVWDl 314 (1715)
.++++|+..+ .++.|.|+|+.+. +..+++. .....-..+..+|+| +++++..+ |.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 6788776654 6789999999765 6677663 112245667889999 77766555 78999999
Q ss_pred CCCCceEEEeCCC---CCeEEEEecCCCCcceEEEEec-------------------CCCcEEEEecCCCCCcceecCCC
Q 048801 315 PDGLPISVLRGHT---GAVTAIAFSPRPSAIYQLLSSS-------------------DDGTCRIWDARYSQYSPRIYLPK 372 (1715)
Q Consensus 315 ~tg~~l~~L~gH~---~~VtsLafSPdg~~~~~LaSgS-------------------~DGtVrIWDl~tg~~l~~i~~~~ 372 (1715)
.+++.+..+.... .--+.+.|+|+++ .+++.. .+.+|.+||+.+++.+.++.+..
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~---~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~ 248 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNE---VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE 248 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTT---EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCC---EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC
Confidence 9999999886322 2235688899988 677764 37899999999877666654421
Q ss_pred CCCCccCccCCCCCCCCCCCCCCCCcceeEEEE--ccCCCeEEEec------CCCeEEEEeCCCCCccCCCCCceeee--
Q 048801 373 PPDAITGKSNVPSNNGPSSSNGLQSHQILCCAY--NANGTVFVTGS------SDTFARVWSACKSSVEDSEQPIHELD-- 442 (1715)
Q Consensus 373 ~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtslaf--SpdG~~LatGs------~DG~IrVWDl~t~~~~~~~~~~~~l~-- 442 (1715)
. ......+.| +|+|+++.+++ .++.|.+|....+.. .....+.
T Consensus 249 ~-----------------------g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~----~~~~vIdi~ 301 (462)
T 2ece_A 249 E-----------------------NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW----NAEKVIEIP 301 (462)
T ss_dssp T-----------------------EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE----EEEEEEEEC
T ss_pred C-----------------------CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce----eEEEEEeCC
Confidence 0 122345555 99999877776 456887766643221 0000000
Q ss_pred ------ee---c----CCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCC
Q 048801 443 ------VL---S----GHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 505 (1715)
Q Consensus 443 ------~l---~----gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t 505 (1715)
.+ . +-......|.+++++ ..+.++.-..+.|.+||+..
T Consensus 302 ~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG-------------------------rfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 302 AEPLEGNLPEILKPFKAVPPLVTDIDISLDD-------------------------KFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp CEECCSSCCGGGGGGTEECCCCCCEEECTTS-------------------------CEEEEEETTTTEEEEEECSS
T ss_pred CccccccccccccccccCCCceeEEEECCCC-------------------------CEEEEEeCCCCEEEEEEecC
Confidence 00 0 002346677788876 23556666789999999863
No 288
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.33 E-value=0.00019 Score=81.98 Aligned_cols=249 Identities=10% Similarity=-0.012 Sum_probs=147.5
Q ss_pred CEEEEEeCCCcEEEEeCCCCcE-----EEEecCCCCCeEEEEECCCCCEEEEE-eCCCeeEEEECCCCCceEEEeCCCCC
Q 048801 256 RFVITGSDDRLVKIWSMETAFC-----LASCRGHEGDITDLAVSSNNTLVASA-SNDFVIRVWRLPDGLPISVLRGHTGA 329 (1715)
Q Consensus 256 ~~LaTGS~DGtIrIWDl~tgk~-----l~tL~gHs~~VtsLafSpDg~lLASG-S~DGtIrVWDl~tg~~l~~L~gH~~~ 329 (1715)
.+|+.+.. +.|+.+++..... ...+......+.+++|++++..|+.+ ...+.|.++++..+.....+......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 45555543 4788888875432 11222223457899999976555544 45789999998766544444333357
Q ss_pred eEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCC
Q 048801 330 VTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANG 409 (1715)
Q Consensus 330 VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG 409 (1715)
..+|++.+++.. .+++....+.|.++++.... ...+.. ........++++|++
T Consensus 81 p~~ia~d~~~~~--lyv~d~~~~~I~~~~~~g~~-~~~~~~------------------------~~~~~P~~i~vd~~~ 133 (267)
T 1npe_A 81 PEGIALDHLGRT--IFWTDSQLDRIEVAKMDGTQ-RRVLFD------------------------TGLVNPRGIVTDPVR 133 (267)
T ss_dssp EEEEEEETTTTE--EEEEETTTTEEEEEETTSCS-CEEEEC------------------------SSCSSEEEEEEETTT
T ss_pred ccEEEEEecCCe--EEEEECCCCEEEEEEcCCCC-EEEEEE------------------------CCCCCccEEEEeeCC
Confidence 899999997652 44555667889999886432 111100 001235789999965
Q ss_pred CeE-EEecC--CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccC
Q 048801 410 TVF-VTGSS--DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCH 486 (1715)
Q Consensus 410 ~~L-atGs~--DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~ 486 (1715)
..| ++... .+.|..+++.... ...+ ..........+++++++ .
T Consensus 134 g~lyv~~~~~~~~~I~~~~~dg~~-------~~~~--~~~~~~~P~gia~d~~~-------------------------~ 179 (267)
T 1npe_A 134 GNLYWTDWNRDNPKIETSHMDGTN-------RRIL--AQDNLGLPNGLTFDAFS-------------------------S 179 (267)
T ss_dssp TEEEEEECCSSSCEEEEEETTSCC-------CEEE--ECTTCSCEEEEEEETTT-------------------------T
T ss_pred CEEEEEECCCCCcEEEEEecCCCC-------cEEE--EECCCCCCcEEEEcCCC-------------------------C
Confidence 544 44433 4688888875321 1111 11222356788888864 2
Q ss_pred ceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecC
Q 048801 487 DNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMD 566 (1715)
Q Consensus 487 ~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~D 566 (1715)
..+++....+.|.++++.+..... . .. .......+++. .+.++++....
T Consensus 180 ~lyv~d~~~~~I~~~~~~g~~~~~--------~---------------------~~-~~~~P~gi~~d-~~~lyva~~~~ 228 (267)
T 1npe_A 180 QLCWVDAGTHRAECLNPAQPGRRK--------V---------------------LE-GLQYPFAVTSY-GKNLYYTDWKT 228 (267)
T ss_dssp EEEEEETTTTEEEEEETTEEEEEE--------E---------------------EE-CCCSEEEEEEE-TTEEEEEETTT
T ss_pred EEEEEECCCCEEEEEecCCCceEE--------E---------------------ec-CCCCceEEEEe-CCEEEEEECCC
Confidence 456677777899999887422100 0 00 01122455554 34444444456
Q ss_pred CeEEEEECCCCceEEEEecCC-CCeEEEEEcc
Q 048801 567 CRICVWNAVDGSLVHSLTGHS-ASSYVLDVHP 597 (1715)
Q Consensus 567 GtI~IWDl~sg~~l~tL~gH~-~~V~sLafSP 597 (1715)
+.|.++|..+++.+..+.... .....|++.|
T Consensus 229 ~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~ 260 (267)
T 1npe_A 229 NSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (267)
T ss_dssp TEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred CeEEEEeCCCCCceEEEccccccccceeeecC
Confidence 899999999999988886433 2356777777
No 289
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.31 E-value=0.00014 Score=89.19 Aligned_cols=234 Identities=11% Similarity=0.076 Sum_probs=136.8
Q ss_pred CCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec
Q 048801 337 PRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS 416 (1715)
Q Consensus 337 Pdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs 416 (1715)
++.+ ++++++..++.|.++|+.+......+.....+..+.. ......-..+.++|+| +++++.
T Consensus 93 ~~r~--~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~--------------~~g~s~Ph~~~~~pdG-i~Vs~~ 155 (462)
T 2ece_A 93 IERR--FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKK--------------VSGYSRLHTVHCGPDA-IYISAL 155 (462)
T ss_dssp CCSC--EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHH--------------HHCEEEEEEEEECSSC-EEEEEE
T ss_pred ccCC--EEEEccCCCCeEEEEECCCCCCCceeeeeechhhccc--------------ccCCCcccceeECCCe-EEEEcC
Confidence 5555 3677888899999999875521111110000000000 0001124567788999 666655
Q ss_pred CC------CeEEEEeCCCCCccCCCCCceeeeeecC--CC-CCeeEEEEccCcccccccccccccccccccccCCcccCc
Q 048801 417 SD------TFARVWSACKSSVEDSEQPIHELDVLSG--HE-NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHD 487 (1715)
Q Consensus 417 ~D------G~IrVWDl~t~~~~~~~~~~~~l~~l~g--H~-~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~ 487 (1715)
.+ |.|.++|..+.++ +..+.. .. ..-..+.|+|++ +
T Consensus 156 g~~~g~~~g~v~vlD~~T~~v---------~~~~~~~~~~~~~~Yd~~~~p~~--------------------------~ 200 (462)
T 2ece_A 156 GNEEGEGPGGILMLDHYSFEP---------LGKWEIDRGDQYLAYDFWWNLPN--------------------------E 200 (462)
T ss_dssp EETTSCSCCEEEEECTTTCCE---------EEECCSBCTTCCCCCCEEEETTT--------------------------T
T ss_pred CCcCCCCCCeEEEEECCCCeE---------EEEEccCCCCccccceEEECCCC--------------------------C
Confidence 44 7899999987643 222221 11 122346667764 4
Q ss_pred eEEEEc-------------------CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCe
Q 048801 488 NIVTCS-------------------RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGV 548 (1715)
Q Consensus 488 ~LaSgS-------------------~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~V 548 (1715)
.+++.. .+.+|.+||+.+++....+ . +.......
T Consensus 201 ~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI---------~------------------vg~~g~~P 253 (462)
T 2ece_A 201 VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL---------T------------------LGEENRMA 253 (462)
T ss_dssp EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE---------E------------------SCTTEEEE
T ss_pred EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE---------e------------------cCCCCCcc
Confidence 555552 4789999999864322111 0 00011223
Q ss_pred eEEEe--CCCCCEEEEEe------cCCeEEEEECCCCce--EEEE--ecC----------------CCCeEEEEEccCCC
Q 048801 549 NMIVW--SLDNRFVLAAI------MDCRICVWNAVDGSL--VHSL--TGH----------------SASSYVLDVHPFNP 600 (1715)
Q Consensus 549 tslaf--SPDG~~LaTgs------~DGtI~IWDl~sg~~--l~tL--~gH----------------~~~V~sLafSP~dg 600 (1715)
..+.| +|+++++++++ .+++|.+|....|+. ...+ ... ......|.+|+++.
T Consensus 254 ~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGr 333 (462)
T 2ece_A 254 LELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDK 333 (462)
T ss_dssp EEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSC
T ss_pred ceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCC
Confidence 34444 99999988877 466888877655532 1111 110 23467899999665
Q ss_pred cEEEEEeCCCcEEEEECCC---CceEEEEEccc--------------ceEEEEEEcCCCCEEEEEe
Q 048801 601 RIAMSAGYDGRTIVWDIWE---GTPIRIYEIGR--------------FKLVDGKFSPDGTSIVLSD 649 (1715)
Q Consensus 601 ~lLaSgs~DGtI~VWDl~t---gk~l~tl~~h~--------------~~V~svafSPDG~~LAsgs 649 (1715)
.+.++.-..+.|.++|+.. .+.+..+..+. +.-..+++||||++|+++.
T Consensus 334 fLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 334 FLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 6666666788999999863 35666665431 1246889999999999887
No 290
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.23 E-value=0.0001 Score=94.63 Aligned_cols=111 Identities=12% Similarity=0.071 Sum_probs=78.4
Q ss_pred CCCC---EEEEEecCCeEEEEECCCCceEEEEecCC-------------CCe--------------------------EE
Q 048801 555 LDNR---FVLAAIMDCRICVWNAVDGSLVHSLTGHS-------------ASS--------------------------YV 592 (1715)
Q Consensus 555 PDG~---~LaTgs~DGtI~IWDl~sg~~l~tL~gH~-------------~~V--------------------------~s 592 (1715)
.+|+ .|+.++.+|.|+++|..+|+.+..+.-.. .++ ..
T Consensus 311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~ 390 (571)
T 2ad6_A 311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGV 390 (571)
T ss_dssp ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred cCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCC
Confidence 4774 67788899999999999999988765321 111 23
Q ss_pred EEEccCCCcEEEEEe------------------------------------CCCcEEEEECCCCceEEEEEcccceEEEE
Q 048801 593 LDVHPFNPRIAMSAG------------------------------------YDGRTIVWDIWEGTPIRIYEIGRFKLVDG 636 (1715)
Q Consensus 593 LafSP~dg~lLaSgs------------------------------------~DGtI~VWDl~tgk~l~tl~~h~~~V~sv 636 (1715)
++++|..+.+++... .+|.|..||+.+|+.+..+.... .+...
T Consensus 391 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~ 469 (571)
T 2ad6_A 391 DSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGG 469 (571)
T ss_dssp CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSB
T ss_pred ceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-Cccce
Confidence 567775444444321 35789999999999998887432 33333
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 048801 637 KFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 637 afSPDG~~LAsgs~DG~I~IWdl~tGe~~k 666 (1715)
.+...+..|++++.||.|++||..+|+.+-
T Consensus 470 ~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw 499 (571)
T 2ad6_A 470 TLYTKGGLVWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp CEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred eEEECCCEEEEEcCCCeEEEEECCCCCEEE
Confidence 334456778889999999999999998763
No 291
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.23 E-value=8e-05 Score=86.07 Aligned_cols=214 Identities=9% Similarity=-0.032 Sum_probs=141.9
Q ss_pred cceeEEEEcCCCC--CeEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCcEEEEecCCCC-CeEEEEECCCCCEEEEEe-C
Q 048801 232 KMQNIKKLRGHRD--AVYCAIFDRSGRFVITGSD--DRLVKIWSMETAFCLASCRGHEG-DITDLAVSSNNTLVASAS-N 305 (1715)
Q Consensus 232 ~~k~l~~L~GH~~--~Vt~VafSpDG~~LaTGS~--DGtIrIWDl~tgk~l~tL~gHs~-~VtsLafSpDg~lLASGS-~ 305 (1715)
+.+.+.++. |.. ....++|++||.+.++.+. ++.|.+.|+.+++.+..+.-... ....+++. +..|+.+. .
T Consensus 8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 455666673 443 3689999998755555443 57999999999999988752221 22345554 44555554 5
Q ss_pred CCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCC
Q 048801 306 DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 306 DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
++.|.++|..+++.+.++...... ...+++++. .|+++..++.|.++|..+.+....+.......
T Consensus 85 ~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~---~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~---------- 149 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGK---ILYGSDGTSILYEIDPHTFKLIKKHNVKYNGH---------- 149 (266)
T ss_dssp CSEEEEEETTTTEEEEEEECCSSS--CCEEEECSS---SEEEECSSSEEEEECTTTCCEEEEEECEETTE----------
T ss_pred CCEEEEEECCCCcEEEEEECCCCC--eEEEEECCC---EEEEECCCCeEEEEECCCCcEEEEEEECCCCc----------
Confidence 789999999999999888632122 233556766 34444568899999999887766664421100
Q ss_pred CCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeee--e------c--CCCCCeeEEE
Q 048801 386 NNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV--L------S--GHENDVNYVQ 455 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~--l------~--gH~~~V~sLa 455 (1715)
.-..+..+.|. +|.+++....++.|.+.|..++++.. .+.. + . ......+.|+
T Consensus 150 ----------p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~------~I~~~g~~~~~~~~~~~~~~v~nGIa 212 (266)
T 2iwa_A 150 ----------RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLG------WILLPNLRKKLIDEGFRDIDVLNGIA 212 (266)
T ss_dssp ----------ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEE------EEECHHHHHHHHHTTCTTCCCEEEEE
T ss_pred ----------ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEE------EEECCCcccccccccccccCceEEEE
Confidence 01125677777 77777766678899999999876421 1111 0 0 0123568999
Q ss_pred EccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCC
Q 048801 456 FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 505 (1715)
Q Consensus 456 fspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t 505 (1715)
|++++ ...++++...+.|.+.++..
T Consensus 213 ~~~~~-------------------------~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 213 WDQEN-------------------------KRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EETTT-------------------------TEEEEEETTCSEEEEEEEEE
T ss_pred EcCCC-------------------------CEEEEECCCCCeEEEEEEec
Confidence 99986 46888898999999988764
No 292
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.23 E-value=0.00043 Score=79.05 Aligned_cols=201 Identities=9% Similarity=-0.031 Sum_probs=126.7
Q ss_pred ceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccc
Q 048801 399 QILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVP 477 (1715)
Q Consensus 399 ~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~ 477 (1715)
.+..++|++++ .++++-...+.|.++++..... ...+.........+++++.+
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~---------~~~~~~~~~~p~~ia~d~~~----------------- 90 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP---------TTIIRQDLGSPEGIALDHLG----------------- 90 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC---------EEEECTTCCCEEEEEEETTT-----------------
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc---------EEEEECCCCCccEEEEEecC-----------------
Confidence 46799999865 4555556678999999865321 11122222456788888754
Q ss_pred cccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC
Q 048801 478 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN 557 (1715)
Q Consensus 478 ~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG 557 (1715)
...+++....+.|.++++...... . ...........++++|++
T Consensus 91 --------~~lyv~d~~~~~I~~~~~~g~~~~--------~---------------------~~~~~~~~P~~i~vd~~~ 133 (267)
T 1npe_A 91 --------RTIFWTDSQLDRIEVAKMDGTQRR--------V---------------------LFDTGLVNPRGIVTDPVR 133 (267)
T ss_dssp --------TEEEEEETTTTEEEEEETTSCSCE--------E---------------------EECSSCSSEEEEEEETTT
T ss_pred --------CeEEEEECCCCEEEEEEcCCCCEE--------E---------------------EEECCCCCccEEEEeeCC
Confidence 245666667788998887632100 0 000011346789999976
Q ss_pred CEEEEEec---CCeEEEEECCCCceEEEEe-cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceE
Q 048801 558 RFVLAAIM---DCRICVWNAVDGSLVHSLT-GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKL 633 (1715)
Q Consensus 558 ~~LaTgs~---DGtI~IWDl~sg~~l~tL~-gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V 633 (1715)
..|+.+.. .+.|.++++. +.....+. ........+++++++++++++-...+.|.++++........+... ...
T Consensus 134 g~lyv~~~~~~~~~I~~~~~d-g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~~P 211 (267)
T 1npe_A 134 GNLYWTDWNRDNPKIETSHMD-GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-QYP 211 (267)
T ss_dssp TEEEEEECCSSSCEEEEEETT-SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-CSE
T ss_pred CEEEEEECCCCCcEEEEEecC-CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC-CCc
Confidence 66655544 3688888875 33333332 333457899999966777777777889999999755444444322 223
Q ss_pred EEEEEcCCCCEEEEEe-CCCeEEEEECCCCcccc
Q 048801 634 VDGKFSPDGTSIVLSD-DVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 634 ~svafSPDG~~LAsgs-~DG~I~IWdl~tGe~~k 666 (1715)
..+++ ++..|.+++ ..+.|.+++..+|+...
T Consensus 212 ~gi~~--d~~~lyva~~~~~~v~~~d~~~g~~~~ 243 (267)
T 1npe_A 212 FAVTS--YGKNLYYTDWKTNSVIAMDLAISKEMD 243 (267)
T ss_dssp EEEEE--ETTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred eEEEE--eCCEEEEEECCCCeEEEEeCCCCCceE
Confidence 45555 355566555 56899999998887554
No 293
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.20 E-value=9.9e-05 Score=95.10 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=43.1
Q ss_pred CCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 048801 608 YDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 608 ~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k 666 (1715)
.+|.|..||+.+|+.+...... .++..-.+...|.+|++++.||.|+.||..+|+.+-
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW 508 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW 508 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEE
Confidence 3578999999999998887632 222222234467778889999999999999998763
No 294
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.20 E-value=6.7e-05 Score=86.04 Aligned_cols=199 Identities=10% Similarity=0.048 Sum_probs=126.5
Q ss_pred cceeEEEEcCCCCC--eEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEe-CC
Q 048801 232 KMQNIKKLRGHRDA--VYCAIFDRSGRFVITGSDDR--LVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASAS-ND 306 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~--Vt~VafSpDG~~LaTGS~DG--tIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS-~D 306 (1715)
..+.++++ .|... ...+.|+ ++.+..+.+.+| .|+++|+.+++.+..+.-.. ......+.+++..|.... .+
T Consensus 30 ~~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~ 106 (262)
T 3nol_A 30 DYQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKN 106 (262)
T ss_dssp EEEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSS
T ss_pred ceEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeC
Confidence 45667777 45443 4788998 677677777766 89999999999999886433 333333333455665555 47
Q ss_pred CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 307 GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
+.+.+||..+.+.+.++.... ....+++++. .|+.+..++.|.++|..+.+.+..+.+.....
T Consensus 107 ~~v~v~D~~t~~~~~ti~~~~---eG~glt~dg~---~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~----------- 169 (262)
T 3nol_A 107 GLGFVWNIRNLRQVRSFNYDG---EGWGLTHNDQ---YLIMSDGTPVLRFLDPESLTPVRTITVTAHGE----------- 169 (262)
T ss_dssp SEEEEEETTTCCEEEEEECSS---CCCCEEECSS---CEEECCSSSEEEEECTTTCSEEEEEECEETTE-----------
T ss_pred CEEEEEECccCcEEEEEECCC---CceEEecCCC---EEEEECCCCeEEEEcCCCCeEEEEEEeccCCc-----------
Confidence 899999999999999987432 2233335555 45555557889999999988777665421100
Q ss_pred CCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeee---ecCCCCCeeEEEEccCc
Q 048801 387 NGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV---LSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~---l~gH~~~V~sLafspdg 460 (1715)
.-..+..+.|. +|.++|..-.+..|.+.|..++++........+... ........+.|+|+|+.
T Consensus 170 ---------~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~ 236 (262)
T 3nol_A 170 ---------ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEH 236 (262)
T ss_dssp ---------ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTT
T ss_pred ---------cccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCC
Confidence 01123456665 787777766788999999998765221111000000 01112456889999876
No 295
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.16 E-value=0.00016 Score=83.63 Aligned_cols=194 Identities=8% Similarity=-0.041 Sum_probs=132.9
Q ss_pred eeEEEEccCCCeEEEecC--CCeEEEEeCCCCCccCCCCCceeeeeec-CCCCCeeEEEEccCccccccccccccccccc
Q 048801 400 ILCCAYNANGTVFVTGSS--DTFARVWSACKSSVEDSEQPIHELDVLS-GHENDVNYVQFSGCAVASRSAMSDAFKEENV 476 (1715)
Q Consensus 400 VtslafSpdG~~LatGs~--DG~IrVWDl~t~~~~~~~~~~~~l~~l~-gH~~~V~sLafspdg~as~~~~~~~~~~~~~ 476 (1715)
...++|++++.++++.+. ++.|+++|+.+++. +..+. +.......+++.+
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v---------~~~i~l~~~~fgeGi~~~g------------------ 75 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKV---------ENIHKMDDSYFGEGLTLLN------------------ 75 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCE---------EEEEECCTTCCEEEEEEET------------------
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCE---------EEEEecCCCcceEEEEEeC------------------
Confidence 578999998866665543 68999999998754 22221 1111222344432
Q ss_pred ccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC
Q 048801 477 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD 556 (1715)
Q Consensus 477 ~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD 556 (1715)
....++.-.++.+.++|..+.+....+. . +... ...+++|
T Consensus 76 ---------~~lyv~t~~~~~v~viD~~t~~v~~~i~---------~-------------------g~~~---g~glt~D 115 (266)
T 2iwa_A 76 ---------EKLYQVVWLKNIGFIYDRRTLSNIKNFT---------H-------------------QMKD---GWGLATD 115 (266)
T ss_dssp ---------TEEEEEETTCSEEEEEETTTTEEEEEEE---------C-------------------CSSS---CCEEEEC
T ss_pred ---------CEEEEEEecCCEEEEEECCCCcEEEEEE---------C-------------------CCCC---eEEEEEC
Confidence 2466677788999999998755333220 0 0011 1335668
Q ss_pred CCEEEEEecCCeEEEEECCCCceEEEEecCC-----CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEccc-
Q 048801 557 NRFVLAAIMDCRICVWNAVDGSLVHSLTGHS-----ASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGR- 630 (1715)
Q Consensus 557 G~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~-----~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~- 630 (1715)
|+.|+++..++.|.++|..+.+.+..+.-.. ..++.+.|. ++.+.+....++.|.+.|..+++.+..+....
T Consensus 116 g~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~ 193 (266)
T 2iwa_A 116 GKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQTDCIARISAKDGTLLGWILLPNL 193 (266)
T ss_dssp SSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEEETTTCCEEEEEECHHH
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCEEEEecCCCCeEEEEECCCCcEEEEEECCCc
Confidence 8888877778999999999999888876321 236778887 45777776678899999999999999998431
Q ss_pred ------------ceEEEEEEcCCCCEEEE-EeCCCeEEEEECCCC
Q 048801 631 ------------FKLVDGKFSPDGTSIVL-SDDVGQIYLLNTGQG 662 (1715)
Q Consensus 631 ------------~~V~svafSPDG~~LAs-gs~DG~I~IWdl~tG 662 (1715)
.....++|+|+++.|++ +...+.|++.++...
T Consensus 194 ~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 194 RKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp HHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred ccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 24578999999876665 557789999887543
No 296
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.14 E-value=1.9e-05 Score=99.88 Aligned_cols=269 Identities=10% Similarity=-0.009 Sum_probs=167.6
Q ss_pred CCCCEEEEEeC-CCcEEEEeCCCCcEEEEecC-CCCCeEEEEE-C-CCCCEEEEEe------------------CCCeeE
Q 048801 253 RSGRFVITGSD-DRLVKIWSMETAFCLASCRG-HEGDITDLAV-S-SNNTLVASAS------------------NDFVIR 310 (1715)
Q Consensus 253 pDG~~LaTGS~-DGtIrIWDl~tgk~l~tL~g-Hs~~VtsLaf-S-pDg~lLASGS------------------~DGtIr 310 (1715)
+||++|+.... ++.|.+.|+.+.++...+.- ....+..+++ + |++.+|++++ .++.|.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 48888887765 56799999999998885542 2346889998 5 9999999885 246799
Q ss_pred EEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCC---------------cEEEEecCCCCCcceecCCCCCC
Q 048801 311 VWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDG---------------TCRIWDARYSQYSPRIYLPKPPD 375 (1715)
Q Consensus 311 VWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DG---------------tVrIWDl~tg~~l~~i~~~~~~~ 375 (1715)
+.|..+.+.+.++.--. ....++++|+++ ++++++.+. .|.+.|+....
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk---~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~------------ 242 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGK---WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE------------ 242 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSS---EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH------------
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCC---EEEEEecCcccCcchhhccccccceEEEeecccee------------
Confidence 99999988888776322 456788999988 556555442 12333221110
Q ss_pred CccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEE
Q 048801 376 AITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQ 455 (1715)
Q Consensus 376 ~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLa 455 (1715)
.+.++|+++.. +.|.|.|..+.+ ... .+..+.. .....++.
T Consensus 243 ----------------------------~~v~~Gk~~~i----~~V~VID~~~~~----~~~--~~~~Ipv-g~~PhGv~ 283 (595)
T 1fwx_A 243 ----------------------------KAIAAGDYQEL----NGVKVVDGRKEA----SSL--FTRYIPI-ANNPHGCN 283 (595)
T ss_dssp ----------------------------HHHHHTCSEEE----TTEEEEECSGGG----CCS--SEEEEEE-ESSCCCEE
T ss_pred ----------------------------EeccCCCeeEE----CcEEEEeCcccC----Cce--eEEEEec-CCCceEEE
Confidence 12345554443 449999998621 000 0112211 12456789
Q ss_pred EccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccC--cccccccccccccCCCCCCCCCCC
Q 048801 456 FSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH--GKVGRWTRAYHLKVPPPPLPPQPP 533 (1715)
Q Consensus 456 fspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 533 (1715)
++|+| ...++++..+.+|.++|+.+.+.. +++ ..
T Consensus 284 ~sPDG-------------------------k~v~V~~~~s~~VsVid~~~~~~~~~~~l---~~---------------- 319 (595)
T 1fwx_A 284 MAPDK-------------------------KHLCVAGKLSPTVTVLDVTRFDAVFYENA---DP---------------- 319 (595)
T ss_dssp ECTTS-------------------------SEEEEECTTSSBEEEEEGGGHHHHHHSCC---CG----------------
T ss_pred EcCCC-------------------------CEEEEeCCCCCeEEEEECccccccccccc---Cc----------------
Confidence 99998 346677778999999999853210 000 00
Q ss_pred CCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCC----------CceEEEEecCCCCe-----EEEEEccC
Q 048801 534 RGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVD----------GSLVHSLTGHSASS-----YVLDVHPF 598 (1715)
Q Consensus 534 ~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~s----------g~~l~tL~gH~~~V-----~sLafSP~ 598 (1715)
...+.....-..+...++|+++|...++.-.|+.|.+||+.+ .+.+.++..|..+- .++.++|
T Consensus 320 -~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~- 397 (595)
T 1fwx_A 320 -RSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA- 397 (595)
T ss_dssp -GGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC-
T ss_pred -ccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC-
Confidence 000111112234678899999995455667799999999977 56777777665432 1224578
Q ss_pred CCcEEEEEeC-C-CcE-----------EEEECCCCce
Q 048801 599 NPRIAMSAGY-D-GRT-----------IVWDIWEGTP 622 (1715)
Q Consensus 599 dg~lLaSgs~-D-GtI-----------~VWDl~tgk~ 622 (1715)
++++|+++.. . .++ .++|+..++.
T Consensus 398 DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 398 TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 5666666542 2 233 8899965553
No 297
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.06 E-value=0.0011 Score=85.08 Aligned_cols=111 Identities=13% Similarity=0.045 Sum_probs=77.2
Q ss_pred CCCC---EEEEEecCCeEEEEECCCCceEEEEecCCC-------------Ce----------------------------
Q 048801 555 LDNR---FVLAAIMDCRICVWNAVDGSLVHSLTGHSA-------------SS---------------------------- 590 (1715)
Q Consensus 555 PDG~---~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~-------------~V---------------------------- 590 (1715)
.+|+ .|+.++.+|.|+++|..+|+++..+..... ++
T Consensus 331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~G 410 (582)
T 1flg_A 331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLG 410 (582)
T ss_dssp SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTC
T ss_pred CCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCcc
Confidence 4674 788899999999999999999887653320 00
Q ss_pred ----EEEEEccCCCcEEEEEe--------------------------------CCCcEEEEECCCCceEEEEEcccceEE
Q 048801 591 ----YVLDVHPFNPRIAMSAG--------------------------------YDGRTIVWDIWEGTPIRIYEIGRFKLV 634 (1715)
Q Consensus 591 ----~sLafSP~dg~lLaSgs--------------------------------~DGtI~VWDl~tgk~l~tl~~h~~~V~ 634 (1715)
..++++|..+.+++... .+|.|..||+.+|+.+.....+. ++.
T Consensus 411 g~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~ 489 (582)
T 1flg_A 411 GKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLW 489 (582)
T ss_dssp SSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCC
T ss_pred ccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCc
Confidence 12456664444443321 36889999999999988776432 222
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcccc
Q 048801 635 DGKFSPDGTSIVLSDDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 635 svafSPDG~~LAsgs~DG~I~IWdl~tGe~~k 666 (1715)
.......|.++++++.||.|+.||..+|+.+-
T Consensus 490 ~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW 521 (582)
T 1flg_A 490 AGVLATAGNLVFTGTGDGYFKAFDAKSGKELW 521 (582)
T ss_dssp SCCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccceEeCCCEEEEECCCCcEEEEECCCCCEEE
Confidence 22223356778889999999999999998763
No 298
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.06 E-value=0.00055 Score=80.60 Aligned_cols=240 Identities=10% Similarity=0.058 Sum_probs=146.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeC--------------------CCCCeEEEEecC-CCCcceE
Q 048801 286 GDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRG--------------------HTGAVTAIAFSP-RPSAIYQ 344 (1715)
Q Consensus 286 ~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~g--------------------H~~~VtsLafSP-dg~~~~~ 344 (1715)
....+++|++++++++++..++.|..|+..++.. ..+.. ....+.+|++.+ ++ .
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g----~ 93 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN----Q 93 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT----E
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCC----c
Confidence 3456789999999888888899999999876543 33321 013578999997 55 3
Q ss_pred EEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecC------
Q 048801 345 LLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSS------ 417 (1715)
Q Consensus 345 LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~------ 417 (1715)
|+.+...+.|..+|..++... .+... ..+ ........+++.+ +|.++++-..
T Consensus 94 l~v~d~~~~i~~~d~~~g~~~-~~~~~-----~~~---------------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~ 152 (322)
T 2fp8_A 94 LYIVDCYYHLSVVGSEGGHAT-QLATS-----VDG---------------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDR 152 (322)
T ss_dssp EEEEETTTEEEEECTTCEECE-EEESE-----ETT---------------EECSCEEEEEECTTTCCEEEEESCSSCCTT
T ss_pred EEEEECCCCEEEEeCCCCEEE-Eeccc-----CCC---------------CcccccceEEEecCCCEEEEECCccccccc
Confidence 555544455888887654321 11100 000 0112367899999 9987776432
Q ss_pred -----------CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccC
Q 048801 418 -----------DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCH 486 (1715)
Q Consensus 418 -----------DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~ 486 (1715)
+|.|..|+..++.. ..+.......+.|++++++
T Consensus 153 ~~~~~~~~~~~~g~v~~~d~~~~~~----------~~~~~~~~~p~gia~~~dg-------------------------- 196 (322)
T 2fp8_A 153 GVQQIMDTSDKTGRLIKYDPSTKET----------TLLLKELHVPGGAEVSADS-------------------------- 196 (322)
T ss_dssp CHHHHHHHTCCCEEEEEEETTTTEE----------EEEEEEESCCCEEEECTTS--------------------------
T ss_pred ccceehcccCCCceEEEEeCCCCEE----------EEeccCCccCcceEECCCC--------------------------
Confidence 36788888765421 1111111234568888875
Q ss_pred c-eEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEec
Q 048801 487 D-NIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIM 565 (1715)
Q Consensus 487 ~-~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~ 565 (1715)
+ ++++-...+.|.+|++..... +. ...+....+ ...++++++|++.++...
T Consensus 197 ~~lyv~d~~~~~I~~~~~~~~~~-~~--------------------------~~~~~~~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 197 SFVLVAEFLSHQIVKYWLEGPKK-GT--------------------------AEVLVKIPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp SEEEEEEGGGTEEEEEESSSTTT-TC--------------------------EEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcC-Cc--------------------------cceEEeCCC-CCCeEECCCCCEEEEecC
Confidence 4 445556678999998874210 00 000000112 677899999987766544
Q ss_pred ----------CCeEEEEECCCCceEEEEecCC----CCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 566 ----------DCRICVWNAVDGSLVHSLTGHS----ASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 566 ----------DGtI~IWDl~sg~~l~tL~gH~----~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
.+.|.++|. .|+.+..+.... ..++++++ . +++++++....+.|.++++.
T Consensus 249 ~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~-~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-H-DGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp ETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-E-TTEEEEECSSCSEEEEEEC-
T ss_pred cccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-e-CCEEEEeecCCCceEEEecc
Confidence 467888886 588877776442 34666666 3 56777777678889998875
No 299
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=98.06 E-value=3.3e-06 Score=91.56 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=58.1
Q ss_pred CCCCCCHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHhhc
Q 048801 1652 FPVPLYPEVIRLRLVNNYYRSLEAAKDDINVMLSNAESYFIKNAALSAKVERLRDWFNRTLNK 1714 (1715)
Q Consensus 1652 ~~~p~~~~~i~~Rl~n~~Yr~~~~~~~d~~~~~~Na~~~n~~~~~i~~~~~~l~~~~~~~i~~ 1714 (1715)
+.-||||.||++||+++.|.++++.+.||++|++||..||++++++.+...+|...|.+.|.+
T Consensus 101 ~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~~~e~~~ag~~l~~~f~~~l~~ 163 (183)
T 3lqh_A 101 QQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPEIKKANSMVKSFFIRQMER 163 (183)
T ss_dssp C--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCChhhhhhhhHHHHHHHHHHHH
Confidence 477999999999999999999999999999999999999999999999999999999887754
No 300
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.99 E-value=0.078 Score=68.55 Aligned_cols=353 Identities=8% Similarity=-0.097 Sum_probs=189.1
Q ss_pred EcCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC--CCeeEEEECC
Q 048801 239 LRGHRDAVYCAIFDRSGRFVI-TGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN--DFVIRVWRLP 315 (1715)
Q Consensus 239 L~GH~~~Vt~VafSpDG~~La-TGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~--DGtIrVWDl~ 315 (1715)
+..-......+++++.++.|+ +-...+.|.+.++........+...-.....|++.|.+.+|+.+.. .+.|...+++
T Consensus 79 ~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d 158 (619)
T 3s94_A 79 VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD 158 (619)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred EeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC
Confidence 333335788999999665555 4456789999998755433333344556778999997666665554 3566666764
Q ss_pred CCCceEEE-eCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCC
Q 048801 316 DGLPISVL-RGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 316 tg~~l~~L-~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~ 394 (1715)
|.....+ ...-...+.|++.+++.. +.++-...+.|...|+..... ..+..
T Consensus 159 -G~~~~~l~~~~~~~P~Glald~~~~~--LY~aD~~~~~I~~~~~dG~~~-~~~~~------------------------ 210 (619)
T 3s94_A 159 -GSSRFIIINSEIYWPNGLTLDYEEQK--LYWADAKLNFIHKSNLDGTNR-QAVVK------------------------ 210 (619)
T ss_dssp -SCSCEEEECSSCSSEEEEEEETTTTE--EEEEETTTCCEEEESSSCCEE-C----------------------------
T ss_pred -CCceEEEEeCCCCCCcEEEEEccCCE--EEEEeCCCCeEEEecCCCCcc-EEEEe------------------------
Confidence 4434333 334456789999987663 344445667888888764321 11100
Q ss_pred CCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEc-cCccc---------cc
Q 048801 395 LQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFS-GCAVA---------SR 464 (1715)
Q Consensus 395 ~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafs-pdg~a---------s~ 464 (1715)
........+++..+ .++++-...+.|...|..+++.. ..+.........+++. +.... ..
T Consensus 211 ~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~---------~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng 280 (619)
T 3s94_A 211 GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL---------REIHSDIFSPMDIHAFSQQRQPNATNPCGIDNG 280 (619)
T ss_dssp -----CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC---------EECCSCCCCCSEEEECCGGGSCCCCCTTTTTGG
T ss_pred CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc---------EEEecCCCCCcEEEEEccccCCCccccccCCCC
Confidence 00111245666655 55666666788888888765421 1111111111122211 10000 00
Q ss_pred ccc----------------ccccc-ccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCC
Q 048801 465 SAM----------------SDAFK-EENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPP 527 (1715)
Q Consensus 465 ~~~----------------~~~~~-~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~ 527 (1715)
... ...+. ..+...+.. ....+|+. +..+.|+..++......
T Consensus 281 ~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~--~~~~~Ll~-~~~~~i~~i~l~~~~~~------------------ 339 (619)
T 3s94_A 281 GCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKD--GATELLLL-ARRTDLRRISLDTPDFT------------------ 339 (619)
T ss_dssp GCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCS--SCSEEEEE-EESSCEEEEESSSTTCC------------------
T ss_pred cccceEECCCCCCCceEeCCchheecccCcccCC--CCceEEEE-EcccceEEEecCCCccc------------------
Confidence 000 00000 000000000 01122332 23445555555432100
Q ss_pred CCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEE-EEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEE
Q 048801 528 LPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVL-AAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSA 606 (1715)
Q Consensus 528 ~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~La-Tgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSg 606 (1715)
........-..+.+++|++.+..|+ +-...+.|+.+++........+...-.....|++...++++.++-
T Consensus 340 ---------~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD 410 (619)
T 3s94_A 340 ---------DIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTD 410 (619)
T ss_dssp ---------CEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEE
T ss_pred ---------eeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEe
Confidence 0000011123467899998555554 444578899999865444444443345567899987677788887
Q ss_pred eCCCcEEEEECCCCceEEEEE-cccceEEEEEEcCCCCEEEEEeC--CCeEEEEECC
Q 048801 607 GYDGRTIVWDIWEGTPIRIYE-IGRFKLVDGKFSPDGTSIVLSDD--VGQIYLLNTG 660 (1715)
Q Consensus 607 s~DGtI~VWDl~tgk~l~tl~-~h~~~V~svafSPDG~~LAsgs~--DG~I~IWdl~ 660 (1715)
...+.|.+.++... ....+. ..-....++++.|....|..++. .+.|...++.
T Consensus 411 ~~~~~I~v~~~~G~-~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d 466 (619)
T 3s94_A 411 TGTDRIEVTRLNGT-MRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALD 466 (619)
T ss_dssp TTTTEEEEEETTSC-SCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCCCcEEEEeCCCC-eEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccC
Confidence 77889999998644 334443 23345789999998666666653 3577777764
No 301
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.98 E-value=0.00099 Score=78.37 Aligned_cols=158 Identities=11% Similarity=0.018 Sum_probs=98.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEec-C------------------CCCCeEEEEECC-CCCE
Q 048801 240 RGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR-G------------------HEGDITDLAVSS-NNTL 299 (1715)
Q Consensus 240 ~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~-g------------------Hs~~VtsLafSp-Dg~l 299 (1715)
.+.-....+++++++|++++++..++.|..|+..++....... . ....+..|++.+ ++.
T Consensus 15 ~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~- 93 (322)
T 2fp8_A 15 EAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ- 93 (322)
T ss_dssp ECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-
T ss_pred CCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-
Confidence 3333445678899999988888889999999988665432111 0 113578999997 665
Q ss_pred EEEEeCCCeeEEEECCCCCceEEEeC-----CCCCeEEEEecC-CCCcceEEEEec-----------------CCCcEEE
Q 048801 300 VASASNDFVIRVWRLPDGLPISVLRG-----HTGAVTAIAFSP-RPSAIYQLLSSS-----------------DDGTCRI 356 (1715)
Q Consensus 300 LASGS~DGtIrVWDl~tg~~l~~L~g-----H~~~VtsLafSP-dg~~~~~LaSgS-----------------~DGtVrI 356 (1715)
|+.+...+.|.++|..++.. ..+.. .......+++.+ ++. +.++.. .++.|..
T Consensus 94 l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~---l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 169 (322)
T 2fp8_A 94 LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI---VYFTDVSTLYDDRGVQQIMDTSDKTGRLIK 169 (322)
T ss_dssp EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC---EEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE---EEEECCcccccccccceehcccCCCceEEE
Confidence 44454455588888765543 22221 113468899999 775 334322 1366777
Q ss_pred EecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEe-cCCCeEEEEeCCC
Q 048801 357 WDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTG-SSDTFARVWSACK 428 (1715)
Q Consensus 357 WDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatG-s~DG~IrVWDl~t 428 (1715)
||..+++...... .......++|+++|+.|.++ +..+.|.+|++..
T Consensus 170 ~d~~~~~~~~~~~--------------------------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 170 YDPSTKETTLLLK--------------------------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp EETTTTEEEEEEE--------------------------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred EeCCCCEEEEecc--------------------------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 7776554211100 01124578999999855544 5668999999875
No 302
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.94 E-value=0.0026 Score=74.37 Aligned_cols=247 Identities=10% Similarity=-0.031 Sum_probs=137.5
Q ss_pred CcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEec-CCC-
Q 048801 275 AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSS-DDG- 352 (1715)
Q Consensus 275 gk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS-~DG- 352 (1715)
.+.+..+... .....++|+++++++++....+.|..||... .....+. ....+.+|++.+++. ++++.. .++
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~---l~vad~~~~~~ 95 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGD---LVATGWNADSI 95 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSC---EEEEEECTTSC
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCc---EEEEeccCCcc
Confidence 4455555432 4678899999999777776789999999764 3333333 345689999999986 344433 333
Q ss_pred cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCC--
Q 048801 353 TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSS-- 430 (1715)
Q Consensus 353 tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~-- 430 (1715)
.|..+|..+++.......+. ......+++.+++..+++-..++.|.++|..++.
T Consensus 96 ~v~~~d~~~g~~~~~~~~~~------------------------~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 96 PVVSLVKSDGTVETLLTLPD------------------------AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp EEEEEECTTSCEEEEEECTT------------------------CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred eEEEEcCCCCeEEEEEeCCC------------------------ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence 46666766665432211100 0112344455666556665567888888875421
Q ss_pred ccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCc
Q 048801 431 VEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHG 510 (1715)
Q Consensus 431 ~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~ 510 (1715)
+......... ......-...+.| ++++ ...+++-...+.|.+|++... +
T Consensus 152 v~~~~~~~~~-~~~~~~~~~pngi--s~dg-------------------------~~lyv~d~~~~~I~~~~~~~~---g 200 (306)
T 2p4o_A 152 IWLEHPMLAR-SNSESVFPAANGL--KRFG-------------------------NFLYVSNTEKMLLLRIPVDST---D 200 (306)
T ss_dssp EEEECGGGSC-SSTTCCSCSEEEE--EEET-------------------------TEEEEEETTTTEEEEEEBCTT---S
T ss_pred EEEECCcccc-ccccCCCCcCCCc--CcCC-------------------------CEEEEEeCCCCEEEEEEeCCC---C
Confidence 0000000000 0000011122233 3332 235666677889999988641 1
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEE--EEecCCC
Q 048801 511 KVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVH--SLTGHSA 588 (1715)
Q Consensus 511 ~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~--tL~gH~~ 588 (1715)
..... ..+ ........++++++|+++++....+.|.+++.. |+... .+.....
T Consensus 201 ~~~~~-----------------------~~~-~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~ 255 (306)
T 2p4o_A 201 KPGEP-----------------------EIF-VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVI 255 (306)
T ss_dssp CBCCC-----------------------EEE-EESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCT
T ss_pred CCCcc-----------------------EEE-eccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccC
Confidence 11000 000 000234568999999887777778899999974 66533 2333335
Q ss_pred CeEEEEEc---cCCCcEEEEEe
Q 048801 589 SSYVLDVH---PFNPRIAMSAG 607 (1715)
Q Consensus 589 ~V~sLafS---P~dg~lLaSgs 607 (1715)
..++++|. |+++.++++..
T Consensus 256 ~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 256 GSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp TEEEEEECCSTTTTTEEEEEEC
T ss_pred CceEEEEecccCCCCEEEEECC
Confidence 67899998 75455655544
No 303
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.93 E-value=0.00035 Score=80.19 Aligned_cols=194 Identities=12% Similarity=0.049 Sum_probs=124.0
Q ss_pred eeEEEEcCCCCC--eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEE--EEECCCCCEEE-EEeCCCe
Q 048801 234 QNIKKLRGHRDA--VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITD--LAVSSNNTLVA-SASNDFV 308 (1715)
Q Consensus 234 k~l~~L~GH~~~--Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~Vts--LafSpDg~lLA-SGS~DGt 308 (1715)
+.+.++ .|... ...+.|+ ++.+.++.+.+|.|+++|+++++.+..+ - ...... +++. +..|+ +.-.++.
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESSSCE
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEccCCE
Confidence 455566 44433 4688887 4566677778899999999999998887 2 233333 5554 44444 4445889
Q ss_pred eEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCC
Q 048801 309 IRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNG 388 (1715)
Q Consensus 309 IrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~ 388 (1715)
+.+||..+++.+.++... ..-..++ +++. .|+.+..++.|.++|..+.+.+.++........
T Consensus 118 v~V~D~~Tl~~~~ti~~~-~eGwGLt--~Dg~---~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~------------ 179 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYS-GEGWGLC--YWNG---KLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQP------------ 179 (268)
T ss_dssp EEEEETTTTEEEEEEECS-SCCCCEE--EETT---EEEEECSSSEEEEECTTTCCEEEEEECEETTEE------------
T ss_pred EEEEECCcCcEEEEEeCC-CceeEEe--cCCC---EEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcc------------
Confidence 999999999999998743 2223444 4555 555556689999999999887777654221100
Q ss_pred CCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeee----ecCCCCCeeEEEEccCc
Q 048801 389 PSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV----LSGHENDVNYVQFSGCA 460 (1715)
Q Consensus 389 ~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~----l~gH~~~V~sLafspdg 460 (1715)
-..+..+.|. +|.++|....+..|.+.|..++++........+... .....+..+.|+++|++
T Consensus 180 --------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~ 246 (268)
T 3nok_A 180 --------VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGS 246 (268)
T ss_dssp --------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTT
T ss_pred --------cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCC
Confidence 1124556666 777777666788999999998765221111000000 01122466889999876
No 304
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.91 E-value=0.0004 Score=78.93 Aligned_cols=198 Identities=13% Similarity=0.030 Sum_probs=122.4
Q ss_pred ceeEEEEcCCCC--CeEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEE-eCCC
Q 048801 233 MQNIKKLRGHRD--AVYCAIFDRSGRFVITGSDD--RLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASA-SNDF 307 (1715)
Q Consensus 233 ~k~l~~L~GH~~--~Vt~VafSpDG~~LaTGS~D--GtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASG-S~DG 307 (1715)
.+.+.++ .|.. -...+.|+. +.+..+.+.+ ..|+++|+.+++.+..+.-... .....+..++..|... -.++
T Consensus 9 ~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 9 YRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSS
T ss_pred eEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCC
Confidence 4556666 5654 356899986 5556666665 4899999999999988764332 2222222234444444 4588
Q ss_pred eeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 308 VIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 308 tIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
.+.+||..+.+.+.++.... .-..|+ +++. .|+.+..++.|.++|..+.+.+.++.+......
T Consensus 86 ~v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~---~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~----------- 148 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYPG-EGWALT--SDDS---HLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRP----------- 148 (243)
T ss_dssp EEEEEETTTTEEEEEEECSS-CCCEEE--ECSS---CEEEECSSSEEEEECTTTCCEEEEEECEETTEE-----------
T ss_pred EEEEEECCcCcEEEEEeCCC-CceEEe--eCCC---EEEEECCCCeEEEEeCCCCeEEEEEEEccCCcc-----------
Confidence 99999999999999987433 223444 4555 345555688999999999887776654221100
Q ss_pred CCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeee----cCCCCCeeEEEEccCc
Q 048801 388 GPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVL----SGHENDVNYVQFSGCA 460 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l----~gH~~~V~sLafspdg 460 (1715)
-..+..+.+. +|.+++..-.+..|.+.|..++++........+.... ....+..+.|+++|.+
T Consensus 149 ---------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~ 215 (243)
T 3mbr_X 149 ---------LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEH 215 (243)
T ss_dssp ---------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTT
T ss_pred ---------cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCC
Confidence 1124455554 7777766666789999999987652211110000000 1122356889999875
No 305
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.89 E-value=0.00023 Score=92.77 Aligned_cols=281 Identities=11% Similarity=0.083 Sum_probs=148.0
Q ss_pred EEEECC-CCCEEEEEeCCC-----------eeEEEECCCCCc--eEEEe-CCCCCeEEEEecCCCCcceEEEEec-CCCc
Q 048801 290 DLAVSS-NNTLVASASNDF-----------VIRVWRLPDGLP--ISVLR-GHTGAVTAIAFSPRPSAIYQLLSSS-DDGT 353 (1715)
Q Consensus 290 sLafSp-Dg~lLASGS~DG-----------tIrVWDl~tg~~--l~~L~-gH~~~VtsLafSPdg~~~~~LaSgS-~DGt 353 (1715)
++++.+ ++++++.|+.+. .+.+||+.+++. +..+. .+.....++++..++. +++.|+ .+..
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~---lyv~GG~~~~~ 266 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ---IVVTGGNDAKK 266 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC---EEEECSSSTTC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC---EEEeCCCCCCc
Confidence 556677 889999887643 588999987753 33332 2333445677888876 677777 4568
Q ss_pred EEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec-CC-----CeEEEEeCC
Q 048801 354 CRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS-SD-----TFARVWSAC 427 (1715)
Q Consensus 354 VrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs-~D-----G~IrVWDl~ 427 (1715)
+.+||..+++....-..+ ....-.++++.++|++++.|+ .+ ..+.+||..
T Consensus 267 v~~yd~~t~~W~~~~~~~------------------------~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 267 TSLYDSSSDSWIPGPDMQ------------------------VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp EEEEEGGGTEEEECCCCS------------------------SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred eEEecCcCCceeECCCCC------------------------ccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence 999998876532211000 011123556667999999998 34 468889987
Q ss_pred CCCccCCCCC-ceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC---------Ce
Q 048801 428 KSSVEDSEQP-IHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD---------GS 497 (1715)
Q Consensus 428 t~~~~~~~~~-~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D---------Gs 497 (1715)
+.+....... ...+.. ..+. .+ + ......++.++.+ ..
T Consensus 323 t~~W~~~~~~~~~p~~~-~~~~-~~----~--------------------------~~~~~iyv~Gg~~g~~~~~~~~~~ 370 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLT-ADKQ-GL----Y--------------------------RSDNHAWLFGWKKGSVFQAGPSTA 370 (656)
T ss_dssp TTEEEEETTSCSGGGCC-CCTT-GG----G--------------------------TTTCSCCEEECGGGCEEECCSSSE
T ss_pred CCcceeCCCcccccccc-cccc-ce----e--------------------------ecCCceEEEECCCCcEEEecCccc
Confidence 6431000000 000000 0000 00 0 0112333444444 35
Q ss_pred EEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeC-CCCCEEEEEecCC---------
Q 048801 498 AIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWS-LDNRFVLAAIMDC--------- 567 (1715)
Q Consensus 498 IrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafS-PDG~~LaTgs~DG--------- 567 (1715)
+..||..+.. |....... . .. .........-.++.|. .+++++++|+.++
T Consensus 371 v~~yd~~~~~-------w~~~~~~~--~---------~~--~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~ 430 (656)
T 1k3i_A 371 MNWYYTSGSG-------DVKSAGKR--Q---------SN--RGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTN 430 (656)
T ss_dssp EEEEECSTTC-------EEEEEEEC--E---------ET--TEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCC
T ss_pred eeeeecCCcc-------eeecCCcc--c---------cc--cccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCc
Confidence 6677766432 11110000 0 00 0000001122344443 4788888887543
Q ss_pred --eEEEEECCCCceEEEE--ecCCCCe-EEEEEccCCCcEEEEEeCC-----------CcEEEEECCCCceEEE--EEcc
Q 048801 568 --RICVWNAVDGSLVHSL--TGHSASS-YVLDVHPFNPRIAMSAGYD-----------GRTIVWDIWEGTPIRI--YEIG 629 (1715)
Q Consensus 568 --tI~IWDl~sg~~l~tL--~gH~~~V-~sLafSP~dg~lLaSgs~D-----------GtI~VWDl~tgk~l~t--l~~h 629 (1715)
.|.+||..+....... ..+.... .++++.| ++++++.||.+ ..+.+||..+.+.... +...
T Consensus 431 ~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~ 509 (656)
T 1k3i_A 431 AHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIV 509 (656)
T ss_dssp EEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSC
T ss_pred ceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECC-CCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCc
Confidence 6888888776654433 2222222 3445556 77888888864 4689999877653321 1111
Q ss_pred cceEEEEEEcCCCCEEEEEeC
Q 048801 630 RFKLVDGKFSPDGTSIVLSDD 650 (1715)
Q Consensus 630 ~~~V~svafSPDG~~LAsgs~ 650 (1715)
+.....+.+.|||+.|++|+.
T Consensus 510 R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 510 RVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCTTEEEEECTTSCEEEEECC
T ss_pred cccccHhhcCCCcEEEecCCC
Confidence 222234566799999999885
No 306
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.88 E-value=0.086 Score=68.13 Aligned_cols=351 Identities=11% Similarity=-0.037 Sum_probs=180.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEe-CCCeeEEEECCCC
Q 048801 241 GHRDAVYCAIFDRSGRFVITGSD--DRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASAS-NDFVIRVWRLPDG 317 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS~--DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS-~DGtIrVWDl~tg 317 (1715)
+.-..-..|+++|.+.+|+.... .+.|...+++...........-.....|++++++..|+.+. ..+.|...++...
T Consensus 124 ~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~ 203 (619)
T 3s94_A 124 QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT 203 (619)
T ss_dssp SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence 44455678999997666665543 45677777664333333333445678999999766666554 4567888887643
Q ss_pred CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCC-CCCCcc--CccCCCCCCCCCCCCC
Q 048801 318 LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPK-PPDAIT--GKSNVPSNNGPSSSNG 394 (1715)
Q Consensus 318 ~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~-~~~~i~--g~~~~~~~~~~~~~~~ 394 (1715)
.....+.+......+|++..+ . .+++-...+.|...|..+++....+.... .+..+. .....+....++....
T Consensus 204 ~~~~~~~~~~~~P~gi~~~~~-~---ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~n 279 (619)
T 3s94_A 204 NRQAVVKGSLPHPFALTLFED-I---LYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDN 279 (619)
T ss_dssp EEC---------CCCEEESSS-E---EEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTG
T ss_pred ccEEEEeCCCCCceEEEEeCC-E---EEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCC
Confidence 322222212223356777655 2 56666677889999988876544332211 010000 0000111111111110
Q ss_pred CCCc----------ceeEEEEccCCC---------------eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCC
Q 048801 395 LQSH----------QILCCAYNANGT---------------VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHEN 449 (1715)
Q Consensus 395 ~h~~----------~VtslafSpdG~---------------~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~ 449 (1715)
+... ...|. +|.|- +|+.+ ..+.|+..++..... ..+......-.
T Consensus 280 g~Cs~lCl~~~~~~~~~C~--C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~-------~~~~~~~~~l~ 349 (619)
T 3s94_A 280 GGCSHLCLMSPVKPFYQCA--CPTGVKLLENGKTCKDGATELLLLA-RRTDLRRISLDTPDF-------TDIVLQLEDIR 349 (619)
T ss_dssp GGCSSEEEECSSTTSEEEE--CCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTC-------CCEECCCSCCS
T ss_pred CcccceEECCCCCCCceEe--CCchheecccCcccCCCCceEEEEE-cccceEEEecCCCcc-------ceeEEeccccC
Confidence 0000 11111 12111 22222 123444444433210 00000001112
Q ss_pred CeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCC
Q 048801 450 DVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLP 529 (1715)
Q Consensus 450 ~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~ 529 (1715)
.+..|+|.+.. +..+++-...+.|..+++.....
T Consensus 350 ~~~~ld~d~~~-------------------------~~ly~sD~~~~~I~r~~~~g~~~--------------------- 383 (619)
T 3s94_A 350 HAIAIDYDPVE-------------------------GYIYWTDDEVRAIRRSFIDGSGS--------------------- 383 (619)
T ss_dssp SEEEEEEETTT-------------------------TEEEEEETTTTEEEEEETTSCSC---------------------
T ss_pred ccEEEEEEcCC-------------------------CeEEEEeCCCCeEEEEEcCCCcc---------------------
Confidence 34455555432 23444555567777776653210
Q ss_pred CCCCCCCCcccccCCCCCeeEEEeCCC-CCEEEEEecCCeEEEEECCCCceEEEEe-cCCCCeEEEEEccCCCcEEEEEe
Q 048801 530 PQPPRGGPRQRLLPTPRGVNMIVWSLD-NRFVLAAIMDCRICVWNAVDGSLVHSLT-GHSASSYVLDVHPFNPRIAMSAG 607 (1715)
Q Consensus 530 ~~~~~g~~~~~l~~h~~~VtslafSPD-G~~LaTgs~DGtI~IWDl~sg~~l~tL~-gH~~~V~sLafSP~dg~lLaSgs 607 (1715)
...+...-.....+++... ++++++-+..+.|.+.++... ....+. ..-....+|++.|..+.++++-.
T Consensus 384 --------~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~-~~~~l~~~~l~~P~~iavdp~~G~ly~tD~ 454 (619)
T 3s94_A 384 --------QFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT-MRKILISEDLEEPRAIVLDPMVGYMYWTDW 454 (619)
T ss_dssp --------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECTTCCSEEEEEEETTTTEEEEEEC
T ss_pred --------EEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC-eEEEEEECCCCCeeeEEEEcCCCcEEEecC
Confidence 0001111234568899864 445555556789999998644 333443 34456789999996677776643
Q ss_pred -CCCcEEEEECCCCceEEEEE-cccceEEEEEEcCCCCEEEEEeC-CCeEEEEECCC
Q 048801 608 -YDGRTIVWDIWEGTPIRIYE-IGRFKLVDGKFSPDGTSIVLSDD-VGQIYLLNTGQ 661 (1715)
Q Consensus 608 -~DGtI~VWDl~tgk~l~tl~-~h~~~V~svafSPDG~~LAsgs~-DG~I~IWdl~t 661 (1715)
..+.|...++. |.....+. ..-.....+++++++..|..++. .+.|..+++..
T Consensus 455 g~~~~I~r~~~d-G~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG 510 (619)
T 3s94_A 455 GEIPKIERAALD-GSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDG 510 (619)
T ss_dssp SSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSS
T ss_pred CCCCEEEEEccC-CCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCC
Confidence 23677777764 44333333 22345678999998888887765 46888898843
No 307
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.84 E-value=0.012 Score=68.78 Aligned_cols=125 Identities=17% Similarity=0.096 Sum_probs=81.1
Q ss_pred cceeEEEEcCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCC--ee
Q 048801 232 KMQNIKKLRGHRDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDF--VI 309 (1715)
Q Consensus 232 ~~k~l~~L~GH~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DG--tI 309 (1715)
..+.+..|..+ .....++|+++|+++++-..++.|..||..+. ....+. ....+..|+++++|+++++..... .|
T Consensus 21 ~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v 97 (306)
T 2p4o_A 21 PAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPV 97 (306)
T ss_dssp CEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceE
Confidence 34556666543 56789999999997777767899999998754 333333 235688999999999766654432 46
Q ss_pred EEEECCCCCceEEEeC-CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCC
Q 048801 310 RVWRLPDGLPISVLRG-HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYS 362 (1715)
Q Consensus 310 rVWDl~tg~~l~~L~g-H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg 362 (1715)
..++..+++....... .......+++.+.+. .+++...++.|.++|..++
T Consensus 98 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~---~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 98 VSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ---YLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp EEEECTTSCEEEEEECTTCSCEEEEEESSSSE---EEEEETTTTEEEEEETTTT
T ss_pred EEEcCCCCeEEEEEeCCCccccCcccccCCCc---EEEEECCCCeEEEEeCCCC
Confidence 6677777765433221 222345555555442 4555556888888887654
No 308
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.82 E-value=0.00078 Score=77.24 Aligned_cols=179 Identities=9% Similarity=0.038 Sum_probs=121.0
Q ss_pred eeEEEEccCCCeEEEecCCC--eEEEEeCCCCCccCCCCCceeeeeecCCCCCe--eEEEEccCcccccccccccccccc
Q 048801 400 ILCCAYNANGTVFVTGSSDT--FARVWSACKSSVEDSEQPIHELDVLSGHENDV--NYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 400 VtslafSpdG~~LatGs~DG--~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V--~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
...+.|+ ++.++++++.+| .|+++|+.++++ +..+... ... ..+++..
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv---------~~~~~l~-~~~FgeGit~~g----------------- 96 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKT---------LQQIELG-KRYFGEGISDWK----------------- 96 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCE---------EEEEECC-TTCCEEEEEEET-----------------
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcE---------EEEEecC-CccceeEEEEeC-----------------
Confidence 5778888 777777777766 899999998754 2222111 122 2233332
Q ss_pred cccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC
Q 048801 476 VPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL 555 (1715)
Q Consensus 476 ~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP 555 (1715)
...++..-.++.+.+||..+.+....+. ... ....+++
T Consensus 97 ----------~~ly~ltw~~~~v~v~D~~t~~~~~ti~-----------------------------~~~---eG~glt~ 134 (262)
T 3nol_A 97 ----------DKIVGLTWKNGLGFVWNIRNLRQVRSFN-----------------------------YDG---EGWGLTH 134 (262)
T ss_dssp ----------TEEEEEESSSSEEEEEETTTCCEEEEEE-----------------------------CSS---CCCCEEE
T ss_pred ----------CEEEEEEeeCCEEEEEECccCcEEEEEE-----------------------------CCC---CceEEec
Confidence 2455666679999999998765433321 000 1123345
Q ss_pred CCCEEEEEecCCeEEEEECCCCceEEEEecC--C---CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEccc
Q 048801 556 DNRFVLAAIMDCRICVWNAVDGSLVHSLTGH--S---ASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGR 630 (1715)
Q Consensus 556 DG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH--~---~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~ 630 (1715)
|+..|+.+..++.|.++|..+.+.+..+... . ..++.+.|. ++++.+..-.++.|.+.|..+|+.+..+....
T Consensus 135 dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~ 212 (262)
T 3nol_A 135 NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGEIFANVWQTNKIVRIDPETGKVTGIIDLNG 212 (262)
T ss_dssp CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEEECTT
T ss_pred CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEEECCc
Confidence 7787777766788999999999998887642 1 334567775 56777766678899999999999999998531
Q ss_pred ------------ceEEEEEEcCCCCEEEEEeC
Q 048801 631 ------------FKLVDGKFSPDGTSIVLSDD 650 (1715)
Q Consensus 631 ------------~~V~svafSPDG~~LAsgs~ 650 (1715)
.....+||+|+++.|++++.
T Consensus 213 L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 213 ILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp GGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 23468999999888877654
No 309
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.77 E-value=0.00053 Score=89.39 Aligned_cols=270 Identities=14% Similarity=0.096 Sum_probs=146.3
Q ss_pred EEEecC-CCCcceEEEEecCCC-----------cEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcc
Q 048801 332 AIAFSP-RPSAIYQLLSSSDDG-----------TCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ 399 (1715)
Q Consensus 332 sLafSP-dg~~~~~LaSgS~DG-----------tVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~ 399 (1715)
++++.+ ++. .++.|+.+. .+.+||..+++.......+. .+...
T Consensus 190 ~~av~~~~g~---l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~----------------------~~~~~ 244 (656)
T 1k3i_A 190 AAAIEPTSGR---VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT----------------------KHDMF 244 (656)
T ss_dssp EEEEETTTTE---EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC----------------------SCCCS
T ss_pred eEEEEecCCE---EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC----------------------CCCCc
Confidence 566776 554 566665432 57889988776432211110 01122
Q ss_pred eeEEEEccCCCeEEEecC-CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccccc
Q 048801 400 ILCCAYNANGTVFVTGSS-DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPK 478 (1715)
Q Consensus 400 VtslafSpdG~~LatGs~-DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~ 478 (1715)
..++++..+|.++++|+. +..+.+||..+.+- ..+..+.... .-.++++.+++
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W-------~~~~~~~~~R-~~~s~~~~~dg------------------ 298 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW-------IPGPDMQVAR-GYQSSATMSDG------------------ 298 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEE-------EECCCCSSCC-SSCEEEECTTS------------------
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCce-------eECCCCCccc-cccceEEecCC------------------
Confidence 345778899999999984 56899999876431 1111111111 11223333333
Q ss_pred ccCCcccCceEEEEc-CC-----CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEE
Q 048801 479 FKNSWFCHDNIVTCS-RD-----GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIV 552 (1715)
Q Consensus 479 ~~~s~~~~~~LaSgS-~D-----GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtsla 552 (1715)
..++.|+ .+ ..+.+||+.+.. |...-.... .++... . +. .+
T Consensus 299 --------~iyv~GG~~~~~~~~~~~e~yd~~t~~-------W~~~~~~~~--~p~~~~---~--------~~-----~~ 345 (656)
T 1k3i_A 299 --------RVFTIGGSWSGGVFEKNGEVYSPSSKT-------WTSLPNAKV--NPMLTA---D--------KQ-----GL 345 (656)
T ss_dssp --------CEEEECCCCCSSSCCCCEEEEETTTTE-------EEEETTSCS--GGGCCC---C--------TT-----GG
T ss_pred --------eEEEEeCcccCCcccccceEeCCCCCc-------ceeCCCccc--cccccc---c--------cc-----ce
Confidence 5777777 34 468899987633 332210000 000000 0 00 11
Q ss_pred eCCCCCEEEEEecC---------CeEEEEECCCCceEEEEecCC---------CCeEEEEEccCCCcEEEEEeCCC----
Q 048801 553 WSLDNRFVLAAIMD---------CRICVWNAVDGSLVHSLTGHS---------ASSYVLDVHPFNPRIAMSAGYDG---- 610 (1715)
Q Consensus 553 fSPDG~~LaTgs~D---------GtI~IWDl~sg~~l~tL~gH~---------~~V~sLafSP~dg~lLaSgs~DG---- 610 (1715)
+..++..++.|+.+ ..|..||..+.........+. ..-.++.|...++++++.||.++
T Consensus 346 ~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~ 425 (656)
T 1k3i_A 346 YRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS 425 (656)
T ss_dssp GTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSS
T ss_pred eecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCC
Confidence 22334444444333 467889988776444332221 12345555555788998888543
Q ss_pred -------cEEEEECCCCceEEEE--EcccceE-EEEEEcCCCCEEEEEeCC-----------CeEEEEECCCCccccc--
Q 048801 611 -------RTIVWDIWEGTPIRIY--EIGRFKL-VDGKFSPDGTSIVLSDDV-----------GQIYLLNTGQGESQKD-- 667 (1715)
Q Consensus 611 -------tI~VWDl~tgk~l~tl--~~h~~~V-~svafSPDG~~LAsgs~D-----------G~I~IWdl~tGe~~k~-- 667 (1715)
.|.+||..+....... ....... .++++.|+|+++++|+.+ ..+.+||..+++-...
T Consensus 426 ~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~ 505 (656)
T 1k3i_A 426 DATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP 505 (656)
T ss_dssp BCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC
T ss_pred CcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCC
Confidence 6788888776654432 1122222 345678999999999754 4689999877653221
Q ss_pred cc----c--ceeecCCCccEEEcC
Q 048801 668 AK----Y--DQFFLGDYRPLIRDS 685 (1715)
Q Consensus 668 ~~----~--~~~fs~D~r~L~~d~ 685 (1715)
.+ + ...+.+|++.++...
T Consensus 506 ~~~~R~~hs~a~ll~dg~v~v~GG 529 (656)
T 1k3i_A 506 NSIVRVYHSISLLLPDGRVFNGGG 529 (656)
T ss_dssp CSSCCCTTEEEEECTTSCEEEEEC
T ss_pred CCCccccccHhhcCCCcEEEecCC
Confidence 11 1 134567888887765
No 310
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.75 E-value=0.019 Score=68.72 Aligned_cols=258 Identities=9% Similarity=-0.085 Sum_probs=152.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEE-EEeCCCeeEEEECCCCCceE
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVA-SASNDFVIRVWRLPDGLPIS 321 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLA-SGS~DGtIrVWDl~tg~~l~ 321 (1715)
.+..+|.+..+++ +|+.+. ...|+..++........+.+ ...+..++|++.+..|+ +-...+.|..+++..+....
T Consensus 33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 109 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 109 (349)
T ss_dssp TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CCCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE
Confidence 3445676666644 444443 35688888876655544444 34578999997655555 44467889999987665544
Q ss_pred EEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCccee
Q 048801 322 VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQIL 401 (1715)
Q Consensus 322 ~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vt 401 (1715)
.+.........|++.+.+.. ++++-...+.|.+.++..... ..+.. .......
T Consensus 110 ~~~~~~~~p~glavd~~~g~--ly~~d~~~~~I~~~~~dG~~~-~~l~~------------------------~~l~~P~ 162 (349)
T 3v64_C 110 VVSTGLESPGGLAVDWVHDK--LYWTDSGTSRIEVANLDGAHR-KVLLW------------------------QSLEKPR 162 (349)
T ss_dssp EECSSCSCCCEEEEETTTTE--EEEEETTTTEEEEEETTSCSC-EEEEC------------------------TTCSCEE
T ss_pred EEeCCCCCccEEEEecCCCe--EEEEcCCCCeEEEEcCCCCce-EEEEe------------------------CCCCCcc
Confidence 44433445678999876552 445656678899988764321 11110 0112357
Q ss_pred EEEEccCC-CeEEEecCC-CeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccc
Q 048801 402 CCAYNANG-TVFVTGSSD-TFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKF 479 (1715)
Q Consensus 402 slafSpdG-~~LatGs~D-G~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~ 479 (1715)
.++++|.+ .++++-... +.|..+++..... .......-...+.|++++.+
T Consensus 163 ~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~---------~~~~~~~~~~PnGla~d~~~------------------- 214 (349)
T 3v64_C 163 AIALHPMEGTIYWTDWGNTPRIEASSMDGSGR---------RIIADTHLFWPNGLTIDYAG------------------- 214 (349)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEETTSCSC---------EESCCSSCSCEEEEEEETTT-------------------
T ss_pred eEEEecCcCeEEEeccCCCCEEEEEeCCCCCc---------EEEEECCCCCcceEEEeCCC-------------------
Confidence 89999855 455554444 7788888764211 11111223356788998754
Q ss_pred cCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCE
Q 048801 480 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRF 559 (1715)
Q Consensus 480 ~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~ 559 (1715)
..++++-...+.|..+++...... ..+.........+++ ..+.+
T Consensus 215 ------~~lY~aD~~~~~I~~~~~dG~~~~-----------------------------~~~~~~~~~P~giav-~~~~l 258 (349)
T 3v64_C 215 ------RRMYWVDAKHHVIERANLDGSHRK-----------------------------AVISQGLPHPFAITV-FEDSL 258 (349)
T ss_dssp ------TEEEEEETTTTEEEEEETTSCSCE-----------------------------EEECSSCSSEEEEEE-ETTEE
T ss_pred ------CEEEEEECCCCEEEEEeCCCCceE-----------------------------EEEeCCCCCceEEEE-ECCEE
Confidence 245666667788888887632100 000011223456666 35556
Q ss_pred EEEEecCCeEEEEECCCCceEEEEecCCCCeEEEE
Q 048801 560 VLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLD 594 (1715)
Q Consensus 560 LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLa 594 (1715)
+++-...+.|..++..+|+.+..+.........|+
T Consensus 259 y~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~ 293 (349)
T 3v64_C 259 YWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIH 293 (349)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred EEecCCCCeEEEEEccCCCccEEeccCCCCCceEE
Confidence 66666678888888777877766654333333443
No 311
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.74 E-value=0.00076 Score=77.39 Aligned_cols=179 Identities=12% Similarity=0.032 Sum_probs=121.4
Q ss_pred eeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccc
Q 048801 400 ILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKF 479 (1715)
Q Consensus 400 VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~ 479 (1715)
...+.|+ ++.++++.+.+|.|+++|+.++++ ...+ +.. ......+++..
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv------~~~~--l~~-~~FgeGit~~g--------------------- 105 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQP------VWME--RLG-NIFAEGLASDG--------------------- 105 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSC------SEEE--ECT-TCCEEEEEECS---------------------
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcE------EeEE--CCC-CcceeEEEEeC---------------------
Confidence 4677887 467788888889999999998764 1222 221 11112244433
Q ss_pred cCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCE
Q 048801 480 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRF 559 (1715)
Q Consensus 480 ~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~ 559 (1715)
...++..-.++.+.+||..+.+.+..+.. ...+ ..+++|+..
T Consensus 106 ------~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~-----------------------------~~eG---wGLt~Dg~~ 147 (268)
T 3nok_A 106 ------ERLYQLTWTEGLLFTWSGMPPQRERTTRY-----------------------------SGEG---WGLCYWNGK 147 (268)
T ss_dssp ------SCEEEEESSSCEEEEEETTTTEEEEEEEC-----------------------------SSCC---CCEEEETTE
T ss_pred ------CEEEEEEccCCEEEEEECCcCcEEEEEeC-----------------------------CCce---eEEecCCCE
Confidence 24666677899999999988664433210 0011 223357888
Q ss_pred EEEEecCCeEEEEECCCCceEEEEecC--C---CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEccc----
Q 048801 560 VLAAIMDCRICVWNAVDGSLVHSLTGH--S---ASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGR---- 630 (1715)
Q Consensus 560 LaTgs~DGtI~IWDl~sg~~l~tL~gH--~---~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~---- 630 (1715)
|+.+..++.|.++|..+.+.+.++.-. . ..++.+.|. ++++.+..-.+..|.+.|..+|+.+..+....
T Consensus 148 L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~ 225 (268)
T 3nok_A 148 LVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRA 225 (268)
T ss_dssp EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHH
T ss_pred EEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCccc
Confidence 888777899999999999998887632 2 234667775 56777666678899999999999999988431
Q ss_pred ---------ceEEEEEEcCCCCEEEEEe
Q 048801 631 ---------FKLVDGKFSPDGTSIVLSD 649 (1715)
Q Consensus 631 ---------~~V~svafSPDG~~LAsgs 649 (1715)
.-...+||+|+++.|++++
T Consensus 226 ~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 226 VAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp HTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred ccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 2356899999877666554
No 312
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.74 E-value=0.02 Score=68.64 Aligned_cols=244 Identities=10% Similarity=-0.076 Sum_probs=144.5
Q ss_pred eEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcce
Q 048801 288 ITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPR 367 (1715)
Q Consensus 288 VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~ 367 (1715)
.+|.+..++. +|+.+ ....|+..++........+. ....+..++|.+.... ++++-...+.|..+++..+.....
T Consensus 36 ~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~--ly~~D~~~~~I~r~~~~g~~~~~~ 110 (349)
T 3v64_C 36 RSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRREL--VFWSDVTLDRILRANLNGSNVEEV 110 (349)
T ss_dssp SCEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTE--EEEEETTTTEEEEEETTSCSCEEE
T ss_pred CcccccccCc-eeEee-cccceEEEeCCCCeeEEeec-CCCceEEEEEeccccE--EEEEeccCCceEEEecCCCCceEE
Confidence 3455555544 34333 23457778876554443333 3455889999986652 445556678898898875542211
Q ss_pred ecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecC
Q 048801 368 IYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSG 446 (1715)
Q Consensus 368 i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~g 446 (1715)
+.. .......+++.+ .+.++++-...+.|.+.++..... ...+..
T Consensus 111 ~~~-------------------------~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~---------~~l~~~ 156 (349)
T 3v64_C 111 VST-------------------------GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---------KVLLWQ 156 (349)
T ss_dssp ECS-------------------------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC---------EEEECT
T ss_pred EeC-------------------------CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce---------EEEEeC
Confidence 100 012246788887 455666666678899998864311 111222
Q ss_pred CCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCC-CeEEEEecCCCccCcccccccccccccCCC
Q 048801 447 HENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD-GSAIIWIPRSRRSHGKVGRWTRAYHLKVPP 525 (1715)
Q Consensus 447 H~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D-GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~ 525 (1715)
.-.....+++.|.+ +.++++-... +.|..+++....
T Consensus 157 ~l~~P~~iavdp~~-------------------------g~ly~td~~~~~~I~r~~~dG~~------------------ 193 (349)
T 3v64_C 157 SLEKPRAIALHPME-------------------------GTIYWTDWGNTPRIEASSMDGSG------------------ 193 (349)
T ss_dssp TCSCEEEEEEETTT-------------------------TEEEEEECSSSCEEEEEETTSCS------------------
T ss_pred CCCCcceEEEecCc-------------------------CeEEEeccCCCCEEEEEeCCCCC------------------
Confidence 33456788888754 2345554444 677777765311
Q ss_pred CCCCCCCCCCCCccccc-CCCCCeeEEEeCCCCCEEEEE-ecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEE
Q 048801 526 PPLPPQPPRGGPRQRLL-PTPRGVNMIVWSLDNRFVLAA-IMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIA 603 (1715)
Q Consensus 526 ~~~~~~~~~g~~~~~l~-~h~~~VtslafSPDG~~LaTg-s~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lL 603 (1715)
...+. ..-...+.|+|+|++..|+.+ ...+.|..+++........+........+|++. ++.++
T Consensus 194 ------------~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly 259 (349)
T 3v64_C 194 ------------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLY 259 (349)
T ss_dssp ------------CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEE
T ss_pred ------------cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEE
Confidence 00010 112346789999876666555 456789999986543333344444556778872 56777
Q ss_pred EEEeCCCcEEEEECCCCceEEEEE
Q 048801 604 MSAGYDGRTIVWDIWEGTPIRIYE 627 (1715)
Q Consensus 604 aSgs~DGtI~VWDl~tgk~l~tl~ 627 (1715)
++-...+.|..++..+|+.+..+.
T Consensus 260 ~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 260 WTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEE
T ss_pred EecCCCCeEEEEEccCCCccEEec
Confidence 777777888888877777766665
No 313
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.68 E-value=0.017 Score=70.24 Aligned_cols=256 Identities=8% Similarity=-0.098 Sum_probs=149.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEE-EEeCCCeeEEEECCCCCceEEEe
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVA-SASNDFVIRVWRLPDGLPISVLR 324 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLA-SGS~DGtIrVWDl~tg~~l~~L~ 324 (1715)
-+|.+..+.+ +|+.+. ...|+..++........+.+ ...+..++|++.+..|+ +-...+.|..+++..+.....+.
T Consensus 79 ~~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 79 RSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp SCEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred CeECCccccc-eeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 4466666644 444443 35788889887665554443 44578999997655554 54567889999987665444444
Q ss_pred CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEE
Q 048801 325 GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCA 404 (1715)
Q Consensus 325 gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vtsla 404 (1715)
........|++.+.+.. ++++-...+.|.+.++..... ..+.. ........++
T Consensus 156 ~~~~~p~glavd~~~g~--lY~~d~~~~~I~~~~~dg~~~-~~l~~------------------------~~l~~P~gia 208 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDK--LYWTDSGTSRIEVANLDGAHR-KVLLW------------------------QSLEKPRAIA 208 (386)
T ss_dssp SSCSCCCCEEEETTTTE--EEEEETTTTEEEECBTTSCSC-EEEEC------------------------SSCSCEEEEE
T ss_pred CCCCCccEEEEEeCCCe--EEEEcCCCCeEEEEeCCCCce-EEeec------------------------CCCCCCcEEE
Confidence 33345677888876552 445556667888887754321 11110 0112367899
Q ss_pred EccCCCe-EEEecCC-CeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCC
Q 048801 405 YNANGTV-FVTGSSD-TFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNS 482 (1715)
Q Consensus 405 fSpdG~~-LatGs~D-G~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s 482 (1715)
+.|.+.. +++-... +.|..+++..... .......-...+.|+|++.+
T Consensus 209 vdp~~g~ly~td~~~~~~I~r~~~dG~~~---------~~~~~~~~~~PnGlavd~~~---------------------- 257 (386)
T 3v65_B 209 LHPMEGTIYWTDWGNTPRIEASSMDGSGR---------RIIADTHLFWPNGLTIDYAG---------------------- 257 (386)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETTSCSC---------EEEECSSCSCEEEEEEEGGG----------------------
T ss_pred EEcCCCeEEEeccCCCCEEEEEeCCCCCc---------EEEEECCCCCeeeEEEeCCC----------------------
Confidence 9986554 4444444 6788888754211 11112223356788888754
Q ss_pred cccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEE
Q 048801 483 WFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLA 562 (1715)
Q Consensus 483 ~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaT 562 (1715)
..++++-+..+.|..+++...... ..+.........|++ ..+.++++
T Consensus 258 ---~~lY~aD~~~~~I~~~d~dG~~~~-----------------------------~~~~~~~~~P~giav-~~~~ly~t 304 (386)
T 3v65_B 258 ---RRMYWVDAKHHVIERANLDGSHRK-----------------------------AVISQGLPHPFAITV-FEDSLYWT 304 (386)
T ss_dssp ---TEEEEEETTTTEEEEECTTSCSCE-----------------------------EEECSSCSSEEEEEE-ETTEEEEE
T ss_pred ---CEEEEEECCCCEEEEEeCCCCeeE-----------------------------EEEECCCCCceEEEE-ECCEEEEe
Confidence 245666667788888887631100 000011223456677 45556666
Q ss_pred EecCCeEEEEECCCCceEEEEecCCCCeEEEEE
Q 048801 563 AIMDCRICVWNAVDGSLVHSLTGHSASSYVLDV 595 (1715)
Q Consensus 563 gs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLaf 595 (1715)
....+.|..++..+|+.+..+.........|++
T Consensus 305 d~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 305 DWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp ETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred eCCCCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 667788999997788777777644333344443
No 314
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.67 E-value=0.0024 Score=84.62 Aligned_cols=244 Identities=9% Similarity=-0.040 Sum_probs=127.2
Q ss_pred CeEEEEec-CCCCcceEEE-EecCC----CcEEEEecCCC-CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCccee
Q 048801 329 AVTAIAFS-PRPSAIYQLL-SSSDD----GTCRIWDARYS-QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQIL 401 (1715)
Q Consensus 329 ~VtsLafS-Pdg~~~~~La-SgS~D----GtVrIWDl~tg-~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~Vt 401 (1715)
.+..++|| |+++ +|+ +...+ ..|+++|+.++ +.+.. .+ .....
T Consensus 175 ~~~~~~~S~PDG~---~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--------~~-------------------~~~~~ 224 (751)
T 2xe4_A 175 DVMEVKPAPPEHD---LVAFSVDMSGNEVYTIEFKRISDPSQTIAD--------KV-------------------SGTNG 224 (751)
T ss_dssp EEEEEEECTTTTC---EEEEEEESSSSSCEEEEEEETTCTTCCCCC--------CE-------------------EEECS
T ss_pred EEeeeEecCCCCC---EEEEEEeCCCCceEEEEEEECCCCCEeCCc--------cc-------------------cCcee
Confidence 57789999 9998 344 22222 35999999887 52210 00 11134
Q ss_pred EEEEccCCCeEEEecCC-----CeEEEEeCCCCCccCCCCCceeeeeec-CCCCCeeEEEEccCcccccccccccccccc
Q 048801 402 CCAYNANGTVFVTGSSD-----TFARVWSACKSSVEDSEQPIHELDVLS-GHENDVNYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 402 slafSpdG~~LatGs~D-----G~IrVWDl~t~~~~~~~~~~~~l~~l~-gH~~~V~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
.++|+|||+.|+....+ ..|.++++.++.. .....+. ........+.|+|++
T Consensus 225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~-------~~~lv~~~~~~~~~~~~~~SpDg--------------- 282 (751)
T 2xe4_A 225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQS-------EDVCLYEEHNPLFSAFMYKAADT--------------- 282 (751)
T ss_dssp CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGG-------GCEEEEECCCTTCEEEEEECTTS---------------
T ss_pred eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCch-------hcEEEEecCCCceEEEEEECCCC---------------
Confidence 68899999887776654 3577788765421 1111221 222345678899987
Q ss_pred cccccCCcccCceEEEEc---CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCC-ccccc-CCCCCeeE
Q 048801 476 VPKFKNSWFCHDNIVTCS---RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGP-RQRLL-PTPRGVNM 550 (1715)
Q Consensus 476 ~~~~~~s~~~~~~LaSgS---~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~-~~~l~-~h~~~Vts 550 (1715)
+.|+..+ ....|.++|+.++.. .. ...+. ........
T Consensus 283 -----------~~l~~~~~~~~~~~l~~~d~~~~~~---------------------------~~~~~~l~~~~~~~~~s 324 (751)
T 2xe4_A 283 -----------NTLCIGSQSPETAEVHLLDLRKGNA---------------------------HNTLEIVRPREKGVRYD 324 (751)
T ss_dssp -----------SEEEEEEECSSCEEEEEEESSSCTT---------------------------CCCEEESSCCCTTCCEE
T ss_pred -----------CEEEEEecCCCCceEEEEECCCCCC---------------------------CceeEEeecCCCCceEE
Confidence 4444433 234566777764210 00 00111 11223344
Q ss_pred EEeCCCCCEEEEE-ecC----CeEEEEECCCCceEEE-EecCCCCeEEEEEccCCCcEEEEEeCCCcE--EEEEC-----
Q 048801 551 IVWSLDNRFVLAA-IMD----CRICVWNAVDGSLVHS-LTGHSASSYVLDVHPFNPRIAMSAGYDGRT--IVWDI----- 617 (1715)
Q Consensus 551 lafSPDG~~LaTg-s~D----GtI~IWDl~sg~~l~t-L~gH~~~V~sLafSP~dg~lLaSgs~DGtI--~VWDl----- 617 (1715)
+.|+. |..|+.. ..+ ..|.++++.++..... +..|...+.--.++++++.++++...+|.. .++++
T Consensus 325 ~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl~~~~~ 403 (751)
T 2xe4_A 325 VQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDG 403 (751)
T ss_dssp EEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEECCTTTS
T ss_pred Eeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEecccccc
Confidence 44443 5544443 333 3688888765322223 444444333233444567788888888864 45564
Q ss_pred --CCCceEEEEEcc-cceEEEEEE----cCCCCEEE-EEeCC---CeEEEEECCCCc
Q 048801 618 --WEGTPIRIYEIG-RFKLVDGKF----SPDGTSIV-LSDDV---GQIYLLNTGQGE 663 (1715)
Q Consensus 618 --~tgk~l~tl~~h-~~~V~svaf----SPDG~~LA-sgs~D---G~I~IWdl~tGe 663 (1715)
..++.+..+... ...+..+.+ ++++..|+ +.+.. +.|+.+++.+|+
T Consensus 404 ~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 404 VFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp CCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred cccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 344413333211 122333333 45666544 33322 578888887775
No 315
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.66 E-value=0.0035 Score=83.05 Aligned_cols=116 Identities=10% Similarity=0.055 Sum_probs=77.5
Q ss_pred CCCC-CeEEEEEc-CCCCEEEEEeC-CC----cEEEEeCCCC-cEEE-EecCCCCCeEEEEECCCCCEEEEEeCC-----
Q 048801 241 GHRD-AVYCAIFD-RSGRFVITGSD-DR----LVKIWSMETA-FCLA-SCRGHEGDITDLAVSSNNTLVASASND----- 306 (1715)
Q Consensus 241 GH~~-~Vt~VafS-pDG~~LaTGS~-DG----tIrIWDl~tg-k~l~-tL~gHs~~VtsLafSpDg~lLASGS~D----- 306 (1715)
+|.- .+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+.. ....++|+|||+.|+....+
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCC
Confidence 4553 68889999 99999886543 23 5999999998 6321 1111 13467899999888877665
Q ss_pred CeeEEEECCCCCc--eEEEe-CCCCCeEEEEecCCCCcceEEEEec---CCCcEEEEecCCC
Q 048801 307 FVIRVWRLPDGLP--ISVLR-GHTGAVTAIAFSPRPSAIYQLLSSS---DDGTCRIWDARYS 362 (1715)
Q Consensus 307 GtIrVWDl~tg~~--l~~L~-gH~~~VtsLafSPdg~~~~~LaSgS---~DGtVrIWDl~tg 362 (1715)
..|.+|++.++.. ...+. .+......+.|+|+++ +|+..+ ....|.++|+.++
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~---~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTN---TLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSS---EEEEEEECSSCEEEEEEESSSC
T ss_pred CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCC---EEEEEecCCCCceEEEEECCCC
Confidence 3688889887643 23333 2334567889999998 344332 3446777888765
No 316
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.62 E-value=0.2 Score=64.80 Aligned_cols=352 Identities=12% Similarity=0.008 Sum_probs=183.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCc
Q 048801 241 GHRDAVYCAIFDRSGRFVITGS-DDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLP 319 (1715)
Q Consensus 241 GH~~~Vt~VafSpDG~~LaTGS-~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~ 319 (1715)
..-..-..|++++++..|..+. ..+.|...++..... ..+.........|++.. +.++++-...+.|...|..+|..
T Consensus 163 ~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 163 PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence 3455678999999877776664 467899999875433 34444444566888865 44445544578899999888876
Q ss_pred eEEEeCCCCCeEEEEe-cCC------------CC-cceEE-------EEecCCCcEEEEecCCCCCcc---eecCCCCCC
Q 048801 320 ISVLRGHTGAVTAIAF-SPR------------PS-AIYQL-------LSSSDDGTCRIWDARYSQYSP---RIYLPKPPD 375 (1715)
Q Consensus 320 l~~L~gH~~~VtsLaf-SPd------------g~-~~~~L-------aSgS~DGtVrIWDl~tg~~l~---~i~~~~~~~ 375 (1715)
...+.........|.. ++. +. ...++ .+.+..|.....|-. .+.. .+.+.. ..
T Consensus 241 ~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~--~C~~~~~~Ll~s~-~~ 317 (628)
T 4a0p_A 241 RTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNR--TCSAPTTFLLFSQ-KS 317 (628)
T ss_dssp CEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSS--CEECCSSEEEEEE-TT
T ss_pred eEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCC--cCccccceeeeec-cc
Confidence 6665543332333322 110 00 00011 111112211111100 0000 000000 00
Q ss_pred CccCccCCCCCCCCCCCCCCCCcceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecC------CC
Q 048801 376 AITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSG------HE 448 (1715)
Q Consensus 376 ~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~g------H~ 448 (1715)
.+...................-..+..++|.+... ++++=...+.|+.+++..... ...+.. ..
T Consensus 318 ~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~---------~~v~~~~~~~~~~~ 388 (628)
T 4a0p_A 318 AINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG---------FTVVVSSVPSQNLE 388 (628)
T ss_dssp EEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---------EEEEC--------C
T ss_pred eEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCc---------eEEEEccccccccc
Confidence 00000000000000000111224477899988554 444444567788887654211 111111 22
Q ss_pred CCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCC
Q 048801 449 NDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPL 528 (1715)
Q Consensus 449 ~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~ 528 (1715)
..+..+++...+ .+++++-+..+.|.+.++.... .. .
T Consensus 389 ~~p~glAvD~~~-------------------------~nLY~td~~~~~I~v~~~~G~~-~~-------~---------- 425 (628)
T 4a0p_A 389 IQPYDLSIDIYS-------------------------RYIYWTCEATNVINVTRLDGRS-VG-------V---------- 425 (628)
T ss_dssp CCEEEEEEETTT-------------------------TEEEEEETTTTEEEEEETTSCE-EE-------E----------
T ss_pred CCcceEEeeccC-------------------------CeEEEEcCCCCEEEEEECCCCe-EE-------E----------
Confidence 356677776543 3566677778888888775311 00 0
Q ss_pred CCCCCCCCCcccccCCCCCeeEEEeCC-CCCEEEEEecCC--eEEEEECCCCceEEEE-ecCCCCeEEEEEccCCCcEEE
Q 048801 529 PPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVLAAIMDC--RICVWNAVDGSLVHSL-TGHSASSYVLDVHPFNPRIAM 604 (1715)
Q Consensus 529 ~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~LaTgs~DG--tI~IWDl~sg~~l~tL-~gH~~~V~sLafSP~dg~lLa 604 (1715)
.+.......+.|++.| .|.++++-.... .|...++. |.....+ ...-...+.|++.+..+++.+
T Consensus 426 -----------l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~~~~l~~P~gla~D~~~~~LYw 493 (628)
T 4a0p_A 426 -----------VLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLFFSGLSKPIALALDSRLGKLFW 493 (628)
T ss_dssp -----------EEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred -----------EEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEEeccCCCccEEEEeCCCCEEEE
Confidence 0011223578999999 555555543333 56666764 4434433 333456789999986677777
Q ss_pred EEeCCCcEEEEECCCCceEEEEE-cccceEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcc
Q 048801 605 SAGYDGRTIVWDIWEGTPIRIYE-IGRFKLVDGKFSPDGTSIVLSD-DVGQIYLLNTGQGES 664 (1715)
Q Consensus 605 Sgs~DGtI~VWDl~tgk~l~tl~-~h~~~V~svafSPDG~~LAsgs-~DG~I~IWdl~tGe~ 664 (1715)
+-+..+.|...++ .|.....+. ........+++.. ..|..++ ....|...+..+|+.
T Consensus 494 ~D~~~~~I~~~~~-dG~~r~~~~~~~~~~P~glav~~--~~ly~tD~~~~~i~~~~k~~G~~ 552 (628)
T 4a0p_A 494 ADSDLRRIESSDL-SGANRIVLEDSNILQPVGLTVFE--NWLYWIDKQQQMIEKIDMTGREG 552 (628)
T ss_dssp EETTTTEEEEEET-TSCSCEEEECSSCSCEEEEEEET--TEEEEEETTTTEEEEEETTSSSC
T ss_pred EeCCCCEEEEEeC-CCCceEEEEcCCCCCcEEEEEEC--CEEEEEECCCCeEEEEECcCCCC
Confidence 6666789999998 455555554 2233456666654 3455554 456788888777754
No 317
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.62 E-value=0.26 Score=63.73 Aligned_cols=352 Identities=10% Similarity=-0.069 Sum_probs=187.2
Q ss_pred CCeEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEE-EEEeCCCeeEEEECCCCCceE
Q 048801 244 DAVYCAIFDRSGRFVITG-SDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLV-ASASNDFVIRVWRLPDGLPIS 321 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTG-S~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lL-ASGS~DGtIrVWDl~tg~~l~ 321 (1715)
..+..|+|++.+..|+.+ ..++.|..+++........+.........|++.+.+..| ++-...+.|.+.++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 457899999876666554 457899999987654444444333457789998765544 555557889999986443333
Q ss_pred EEeCCCCCeEEEEecCCCCcceEEEEec--CCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcc
Q 048801 322 VLRGHTGAVTAIAFSPRPSAIYQLLSSS--DDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQ 399 (1715)
Q Consensus 322 ~L~gH~~~VtsLafSPdg~~~~~LaSgS--~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~ 399 (1715)
.+...-....+|++.|... .|+.+. ..+.|...++..... ..+.. ....
T Consensus 117 l~~~~l~~P~~iavdp~~G---~lY~tD~g~~~~I~r~~~dG~~~-~~l~~-------------------------~~~~ 167 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEG---FMYWTEWGGKPKIDRAAMDGSER-TTLVP-------------------------NVGR 167 (628)
T ss_dssp EECSSCCCEEEEEEETTTT---EEEEEECSSSCEEEEEETTSCSC-EEEEC-------------------------SCSS
T ss_pred EEeCCCCCcccEEEccCCC---eEEEeCCCCCCEEEEEeCCCCce-EEEEC-------------------------CCCC
Confidence 3334445678999998665 343333 356677776654321 11110 1234
Q ss_pred eeEEEEccCCCeE-EEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCccccccccccccccccccc
Q 048801 400 ILCCAYNANGTVF-VTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPK 478 (1715)
Q Consensus 400 VtslafSpdG~~L-atGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~ 478 (1715)
...+++++++..| ++-...+.|..+++..... . .+.........|++..+
T Consensus 168 P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-------~---v~~~~l~~P~glav~~~------------------- 218 (628)
T 4a0p_A 168 ANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-------E---VIADDLPHPFGLTQYQD------------------- 218 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------E---EEEECCSCEEEEEEETT-------------------
T ss_pred cceEEEccccCEEEEEECCCCEEEEEcCCCCce-------E---EeeccCCCceEEEEECC-------------------
Confidence 6789999975544 4445578899998864311 1 12222223345555432
Q ss_pred ccCCcccCceEEEEcCCCeEEEEecCCCccCccccc-cc-----ccccccCCCCCCCCCCCCCCCcccccCCC-CCeeEE
Q 048801 479 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGR-WT-----RAYHLKVPPPPLPPQPPRGGPRQRLLPTP-RGVNMI 551 (1715)
Q Consensus 479 ~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~-~~-----~~~~l~~~~~~~~~~~~~g~~~~~l~~h~-~~Vtsl 551 (1715)
..+++-...+.|...|..++.....+.. .. ..++-...+....-....+.+...-.... +...|.
T Consensus 219 --------~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~ 290 (628)
T 4a0p_A 219 --------YIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCG 290 (628)
T ss_dssp --------EEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEE
T ss_pred --------EEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEE
Confidence 3555655677787777665543222110 00 01110000000000000111110000001 122221
Q ss_pred E-----eCCCC-------CEEEEEecCCeEEEEECCCCce-EEEEec-CCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 552 V-----WSLDN-------RFVLAAIMDCRICVWNAVDGSL-VHSLTG-HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 552 a-----fSPDG-------~~LaTgs~DGtI~IWDl~sg~~-l~tL~g-H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
| +.+|+ .+|+.+. ...|+-..+..... -..+.. .-..+.+|+|.+.++.++++=...+.|+.+++
T Consensus 291 C~~g~~l~~d~~~C~~~~~~Ll~s~-~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~ 369 (628)
T 4a0p_A 291 CPAHYSLNADNRTCSAPTTFLLFSQ-KSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQE 369 (628)
T ss_dssp CSTTCEECTTSSCEECCSSEEEEEE-TTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred cCCCcEecccCCcCccccceeeeec-cceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEc
Confidence 1 11222 2344333 34455444432211 112221 22457899999877777777667788999987
Q ss_pred CCCceEEEEEc------ccceEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCc
Q 048801 618 WEGTPIRIYEI------GRFKLVDGKFSPDGTSIVLS-DDVGQIYLLNTGQGE 663 (1715)
Q Consensus 618 ~tgk~l~tl~~------h~~~V~svafSPDG~~LAsg-s~DG~I~IWdl~tGe 663 (1715)
........+.. .-..+..+++...++.|..+ ...+.|.+.++. |+
T Consensus 370 ~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~ 421 (628)
T 4a0p_A 370 DGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GR 421 (628)
T ss_dssp TSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SC
T ss_pred CCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CC
Confidence 54333333322 22357789999988777655 456788888874 43
No 318
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.60 E-value=0.046 Score=64.67 Aligned_cols=276 Identities=9% Similarity=0.060 Sum_probs=148.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEec----CCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCR----GHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL 318 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~----gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~ 318 (1715)
...+.+|.|.+++..+++ +.+|.| +...+.|+.-..+. .....+.+|.|.+ +..++ ++..+.|.. ..+.|+
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCC
Confidence 457999999888877775 456765 34444444322222 1244789999986 44444 445664443 333454
Q ss_pred ceEEEe---CCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCC
Q 048801 319 PISVLR---GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGL 395 (1715)
Q Consensus 319 ~l~~L~---gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~ 395 (1715)
.-..+. .+.+.+..|.+.+++. .++++ .+|.|..- ...++.-..+.. .
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~~~---~~~~~-~~g~v~~S-~DgG~tW~~~~~------------------------~ 160 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGNGS---AEMIT-NVGAIYRT-KDSGKNWQALVQ------------------------E 160 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEETTE---EEEEE-TTCCEEEE-SSTTSSEEEEEC------------------------S
T ss_pred CceECccccCCCCCeEEEEEECCCC---EEEEe-CCccEEEE-cCCCCCCEEeec------------------------C
Confidence 444332 2345678888876653 34444 45544221 112221111110 0
Q ss_pred CCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccc
Q 048801 396 QSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 396 h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
....+..+++.+++.+++++...+..+-+|-. +. ....+. ......+..+.+.+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~------tW~~~~--~~~~~~~~~~~~~~~g--------------- 216 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QT------AWEPHN--RTTSRRLHNMGFTPDG--------------- 216 (327)
T ss_dssp CCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CS------SCEEEE--CCSSSCEEEEEECTTS---------------
T ss_pred CCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CC------ceeECC--CCCCCccceeEECCCC---------------
Confidence 12347889999999888877554434434421 11 122221 2334567788887754
Q ss_pred cccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC
Q 048801 476 VPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL 555 (1715)
Q Consensus 476 ~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP 555 (1715)
.++.++.+|.+.+.+.+.+. .|..... + -......+.++++.+
T Consensus 217 ------------~~~~~~~~G~~~~s~~D~G~------tW~~~~~---~----------------~~~~~~~~~~v~~~~ 259 (327)
T 2xbg_A 217 ------------RLWMIVNGGKIAFSDPDNSE------NWGELLS---P----------------LRRNSVGFLDLAYRT 259 (327)
T ss_dssp ------------CEEEEETTTEEEEEETTEEE------EECCCBC---T----------------TSSCCSCEEEEEESS
T ss_pred ------------CEEEEeCCceEEEecCCCCC------eeEeccC---C----------------cccCCcceEEEEecC
Confidence 44555667877766322111 1221100 0 001123578899998
Q ss_pred CCCEEEEEecCCeEEEEECCCCceEEEEec---CCCCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 556 DNRFVLAAIMDCRICVWNAVDGSLVHSLTG---HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 556 DG~~LaTgs~DGtI~IWDl~sg~~l~tL~g---H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
++.+++++. ++.| ++....|+.-..+.. +...++++.|.+ ++. +++++.+|.|.-++-
T Consensus 260 ~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~-~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 260 PNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFS-PDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp SSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEE-TTE-EEEECSTTEEEEECC
T ss_pred CCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEEC-CCc-eEEEcCCceEEEEcC
Confidence 887777654 6666 455555655444442 345678898875 444 456678898776653
No 319
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.59 E-value=0.052 Score=64.22 Aligned_cols=273 Identities=10% Similarity=0.010 Sum_probs=144.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeC----CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecC
Q 048801 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRG----HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~g----H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~ 360 (1715)
...+.+|.|.+++..+|+ +..|.| ++..+.|+.-..+.. ....+.+|.|.+ + .++.++..|.|.. ...
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~----~~~~~g~~g~i~~-S~D 106 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N----EGWIVGEPPIMLH-TTD 106 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T----EEEEEEETTEEEE-ESS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C----eEEEEECCCeEEE-ECC
Confidence 447899999887877775 456765 334444543333321 244688999976 2 2333455664443 222
Q ss_pred CCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCcee
Q 048801 361 YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHE 440 (1715)
Q Consensus 361 tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~ 440 (1715)
.|+.-..+... ......+..+.+.+++..++++. +|.|.. ....+ .....
T Consensus 107 gG~tW~~~~~~----------------------~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG------~tW~~ 156 (327)
T 2xbg_A 107 GGQSWSQIPLD----------------------PKLPGSPRLIKALGNGSAEMITN-VGAIYR-TKDSG------KNWQA 156 (327)
T ss_dssp TTSSCEECCCC----------------------TTCSSCEEEEEEEETTEEEEEET-TCCEEE-ESSTT------SSEEE
T ss_pred CCCCceECccc----------------------cCCCCCeEEEEEECCCCEEEEeC-CccEEE-EcCCC------CCCEE
Confidence 23211111000 00112356777777777777664 454322 11111 11222
Q ss_pred eeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEE-EEecCCCccCcccccccccc
Q 048801 441 LDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAI-IWIPRSRRSHGKVGRWTRAY 519 (1715)
Q Consensus 441 l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIr-IWDl~t~~~~~~~~~~~~~~ 519 (1715)
+ ...+...+..+.+.+++ ..++.+ .+|.+. -+|-. +. .|...
T Consensus 157 ~--~~~~~~~~~~~~~~~~~--------------------------~~~~~g-~~G~~~~S~d~g-G~------tW~~~- 199 (327)
T 2xbg_A 157 L--VQEAIGVMRNLNRSPSG--------------------------EYVAVS-SRGSFYSTWEPG-QT------AWEPH- 199 (327)
T ss_dssp E--ECSCCCCEEEEEECTTS--------------------------CEEEEE-TTSSEEEEECTT-CS------SCEEE-
T ss_pred e--ecCCCcceEEEEEcCCC--------------------------cEEEEE-CCCcEEEEeCCC-CC------ceeEC-
Confidence 2 22344577888888754 345444 444443 33321 10 12111
Q ss_pred cccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe-c---CCCCeEEEEE
Q 048801 520 HLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT-G---HSASSYVLDV 595 (1715)
Q Consensus 520 ~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~-g---H~~~V~sLaf 595 (1715)
.......+..+++++++.+++ ++.+|.|++++...|+.-..+. + +...+.++++
T Consensus 200 ---------------------~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~ 257 (327)
T 2xbg_A 200 ---------------------NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAY 257 (327)
T ss_dssp ---------------------ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEE
T ss_pred ---------------------CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEe
Confidence 011234678889999987665 5567888776533343322222 1 2245889999
Q ss_pred ccCCCcEEEEEeCCCcEEEEECCCCceEEEEEc---ccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 596 HPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEI---GRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 596 SP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~---h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
.+ ++.+++++ .+|.| ++..+.|+.-..+.. ....+.++.|.+++. +++++.+|.|.-++
T Consensus 258 ~~-~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 258 RT-PNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp SS-SSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred cC-CCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 87 56666554 57767 455555654443332 234677888876554 66667788877665
No 320
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.59 E-value=0.018 Score=70.01 Aligned_cols=203 Identities=10% Similarity=-0.102 Sum_probs=121.2
Q ss_pred ceeEEEEccC-CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccc
Q 048801 399 QILCCAYNAN-GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVP 477 (1715)
Q Consensus 399 ~VtslafSpd-G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~ 477 (1715)
.+..++|++. +.++++-...+.|..+++..... ...+.........+++.+.+
T Consensus 117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~---------~~~~~~~~~~p~glavd~~~----------------- 170 (386)
T 3v65_B 117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNV---------EEVVSTGLESPGGLAVDWVH----------------- 170 (386)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE---------EEEECSSCSCCCCEEEETTT-----------------
T ss_pred ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc---------EEEEeCCCCCccEEEEEeCC-----------------
Confidence 3788999974 55566666778899998865321 11111112233456665432
Q ss_pred cccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC
Q 048801 478 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN 557 (1715)
Q Consensus 478 ~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG 557 (1715)
..++++-...+.|.+.++..... ...+.........|+++|.+
T Consensus 171 --------g~lY~~d~~~~~I~~~~~dg~~~-----------------------------~~l~~~~l~~P~giavdp~~ 213 (386)
T 3v65_B 171 --------DKLYWTDSGTSRIEVANLDGAHR-----------------------------KVLLWQSLEKPRAIALHPME 213 (386)
T ss_dssp --------TEEEEEETTTTEEEECBTTSCSC-----------------------------EEEECSSCSCEEEEEEETTT
T ss_pred --------CeEEEEcCCCCeEEEEeCCCCce-----------------------------EEeecCCCCCCcEEEEEcCC
Confidence 34556666677777776653110 00011122346889999877
Q ss_pred CEEEEEec-C-CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEE
Q 048801 558 RFVLAAIM-D-CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVD 635 (1715)
Q Consensus 558 ~~LaTgs~-D-GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~s 635 (1715)
.+|+.+.. . +.|..+++........+...-...+.|+|+|.++++.++-...+.|..+++........+.........
T Consensus 214 g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~g 293 (386)
T 3v65_B 214 GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFA 293 (386)
T ss_dssp TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEE
T ss_pred CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceE
Confidence 66655543 4 678888875433333333334457899999877788877777889999998644333333333334567
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 636 GKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 636 vafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
+++ ..+.++++-...+.|..++..+|+..
T Consensus 294 iav-~~~~ly~td~~~~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 294 ITV-FEDSLYWTDWHTKSINSANKFTGKNQ 322 (386)
T ss_dssp EEE-ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEE-ECCEEEEeeCCCCeEEEEECCCCcce
Confidence 777 33444445456678888886666544
No 321
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.53 E-value=0.0043 Score=70.51 Aligned_cols=180 Identities=10% Similarity=0.001 Sum_probs=119.5
Q ss_pred eeEEEEccCCCeEEEecCC--CeEEEEeCCCCCccCCCCCceeeeeecCCCC-CeeEEEEccCccccccccccccccccc
Q 048801 400 ILCCAYNANGTVFVTGSSD--TFARVWSACKSSVEDSEQPIHELDVLSGHEN-DVNYVQFSGCAVASRSAMSDAFKEENV 476 (1715)
Q Consensus 400 VtslafSpdG~~LatGs~D--G~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~-~V~sLafspdg~as~~~~~~~~~~~~~ 476 (1715)
...+.|+. +.++.+.+.. ..|+++|+.++++ +..+.-... .-..+++..
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv---------~~~~~l~~~~fgeGi~~~~------------------ 74 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRI---------LQRAEVPPPYFGAGIVAWR------------------ 74 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCE---------EEEEECCTTCCEEEEEEET------------------
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECCCCCE---------EEEEeCCCCcceeEEEEeC------------------
Confidence 66888886 6666666665 4899999998754 222211111 112233322
Q ss_pred ccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCC
Q 048801 477 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLD 556 (1715)
Q Consensus 477 ~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPD 556 (1715)
...++..-.++.+.+||..+.+....+. ....+ ..++++
T Consensus 75 ---------~~ly~ltw~~~~v~v~D~~tl~~~~ti~-----------------------------~~~~G---wglt~d 113 (243)
T 3mbr_X 75 ---------DRLIQLTWRNHEGFVYDLATLTPRARFR-----------------------------YPGEG---WALTSD 113 (243)
T ss_dssp ---------TEEEEEESSSSEEEEEETTTTEEEEEEE-----------------------------CSSCC---CEEEEC
T ss_pred ---------CEEEEEEeeCCEEEEEECCcCcEEEEEe-----------------------------CCCCc---eEEeeC
Confidence 2456666789999999998765443321 00111 233357
Q ss_pred CCEEEEEecCCeEEEEECCCCceEEEEecCC-----CCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcc--
Q 048801 557 NRFVLAAIMDCRICVWNAVDGSLVHSLTGHS-----ASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIG-- 629 (1715)
Q Consensus 557 G~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~-----~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h-- 629 (1715)
+..|+++..++.|.++|..+.+.+.++.-.. ..++.+.|. ++++.+..-.+..|.+.|..+|+.+..+...
T Consensus 114 g~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l 191 (243)
T 3mbr_X 114 DSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--NGELLANVWLTSRIARIDPASGKVVAWIDLQAL 191 (243)
T ss_dssp SSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEECGGG
T ss_pred CCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEECCcC
Confidence 7777777778899999999999988876422 345667764 5677766667889999999999999998843
Q ss_pred ----------c-ceEEEEEEcCCCCEEEEEeC
Q 048801 630 ----------R-FKLVDGKFSPDGTSIVLSDD 650 (1715)
Q Consensus 630 ----------~-~~V~svafSPDG~~LAsgs~ 650 (1715)
. .-...+|++|+++.|++++.
T Consensus 192 ~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 192 VPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp STTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred ccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 1 13568999998887776654
No 322
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.51 E-value=0.053 Score=63.76 Aligned_cols=205 Identities=9% Similarity=-0.060 Sum_probs=121.4
Q ss_pred ceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccc
Q 048801 399 QILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVP 477 (1715)
Q Consensus 399 ~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~ 477 (1715)
.+..++|++.+ .++++-...+.|..+++..... .. .....+...-.....+++.+.+
T Consensus 31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~---~~--~~~~~~~~~~~~p~glavd~~~----------------- 88 (316)
T 1ijq_A 31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG---VS--SYDTVISRDIQAPDGLAVDWIH----------------- 88 (316)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC-------------CEEEECSSCSCCCEEEEETTT-----------------
T ss_pred ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC---Cc--ccEEEEeCCCCCcCEEEEeecC-----------------
Confidence 36789999865 5556666678999998864100 00 0011122222344667776432
Q ss_pred cccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC
Q 048801 478 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN 557 (1715)
Q Consensus 478 ~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG 557 (1715)
...+++-...+.|.++++...... . .+.........++++|.+
T Consensus 89 --------~~ly~~d~~~~~I~~~~~~g~~~~-~----------------------------~~~~~~~~P~~iavdp~~ 131 (316)
T 1ijq_A 89 --------SNIYWTDSVLGTVSVADTKGVKRK-T----------------------------LFRENGSKPRAIVVDPVH 131 (316)
T ss_dssp --------TEEEEEETTTTEEEEEETTSSSEE-E----------------------------EEECTTCCEEEEEEETTT
T ss_pred --------CeEEEEECCCCEEEEEeCCCCceE-E----------------------------EEECCCCCcceEEeCCCC
Confidence 245566677888888887642100 0 000112346789999976
Q ss_pred CEEEEEecC--CeEEEEECCCCceEEEEe-cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcc---cc
Q 048801 558 RFVLAAIMD--CRICVWNAVDGSLVHSLT-GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIG---RF 631 (1715)
Q Consensus 558 ~~LaTgs~D--GtI~IWDl~sg~~l~tL~-gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h---~~ 631 (1715)
..|+.+... +.|...++. |.....+. ..-.....|+++++++++.++-...+.|..+|+. |.....+... -.
T Consensus 132 g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d-g~~~~~~~~~~~~~~ 209 (316)
T 1ijq_A 132 GFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILEDEKRLA 209 (316)
T ss_dssp TEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEEECTTTTS
T ss_pred CEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecC-CCceEEEeecCCccC
Confidence 666555543 688888874 44444442 3345678999998777777777778899999986 4433434221 22
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 632 KLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 632 ~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
....+++. .+.++++-...+.|..++..+|+..
T Consensus 210 ~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 210 HPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 242 (316)
T ss_dssp SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred CcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcce
Confidence 35567774 3444445556788999998777544
No 323
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.45 E-value=0.033 Score=63.85 Aligned_cols=205 Identities=10% Similarity=0.087 Sum_probs=130.0
Q ss_pred cceeEEEEccCCC-eEEEecCCCeEEEEeCCCCCccCCCCCceeeeeec-CCCCCeeEEEEccCcccccccccccccccc
Q 048801 398 HQILCCAYNANGT-VFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS-GHENDVNYVQFSGCAVASRSAMSDAFKEEN 475 (1715)
Q Consensus 398 ~~VtslafSpdG~-~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~-gH~~~V~sLafspdg~as~~~~~~~~~~~~ 475 (1715)
..+..++|+|++. ++++...++.|...|.. +++ +..+. +-......|++.+++
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v---------~~~i~l~g~~D~EGIa~~~~g--------------- 81 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL---------IRTIPLDFVKDLETIEYIGDN--------------- 81 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE---------EEEEECSSCSSEEEEEECSTT---------------
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE---------EEEEecCCCCChHHeEEeCCC---------------
Confidence 4589999999765 55567778888888886 432 22221 112456777777654
Q ss_pred cccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC
Q 048801 476 VPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL 555 (1715)
Q Consensus 476 ~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP 555 (1715)
.++++.-.++.+.++++.....+.. .....+. . ...........|+|+|
T Consensus 82 -----------~~~vs~E~~~~l~~~~v~~~~~i~~----~~~~~~~---------------~-~~~~~N~g~EGLA~d~ 130 (255)
T 3qqz_A 82 -----------QFVISDERDYAIYVISLTPNSEVKI----LKKIKIP---------------L-QESPTNCGFEGLAYSR 130 (255)
T ss_dssp -----------EEEEEETTTTEEEEEEECTTCCEEE----EEEEECC---------------C-SSCCCSSCCEEEEEET
T ss_pred -----------EEEEEECCCCcEEEEEcCCCCeeee----eeeeccc---------------c-ccccccCCcceEEEeC
Confidence 4556666778888888765321000 0000000 0 0112355689999999
Q ss_pred CCCEEEEEecCCeEEEEECC---CCceEEEEe-------cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEE
Q 048801 556 DNRFVLAAIMDCRICVWNAV---DGSLVHSLT-------GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRI 625 (1715)
Q Consensus 556 DG~~LaTgs~DGtI~IWDl~---sg~~l~tL~-------gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~t 625 (1715)
.+..|+++.......||.+. ....+..+. .+...+.+++++|..+++++.......|.++|. +|+.+..
T Consensus 131 ~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~-~g~~~~~ 209 (255)
T 3qqz_A 131 QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTL-VGEVIGE 209 (255)
T ss_dssp TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECT-TCCEEEE
T ss_pred CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcC-CCCEEEE
Confidence 99877777765555555543 111222221 133456899999988888888888899999996 5777777
Q ss_pred EEcccc---------eEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 626 YEIGRF---------KLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 626 l~~h~~---------~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
+....+ ..-.|+|.++|+ |.++++...+++|.-.
T Consensus 210 ~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 210 MSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp EECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred EEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEec
Confidence 664321 456899999998 5555777888888643
No 324
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.39 E-value=0.03 Score=69.21 Aligned_cols=155 Identities=8% Similarity=0.096 Sum_probs=93.5
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCC---Ce-eEEEECCCCC
Q 048801 245 AVYCAIFDRS--GRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASND---FV-IRVWRLPDGL 318 (1715)
Q Consensus 245 ~Vt~VafSpD--G~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~D---Gt-IrVWDl~tg~ 318 (1715)
.-..|+|+|+ +..|+.+...+.|+.++..++..... ........+|+|+++|.++++.... .. +...+...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4568999985 44555554448999999987766544 3455668999999999955444321 12 3333322221
Q ss_pred c-eEEEeCCCCCeEEEEecC-CCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCC
Q 048801 319 P-ISVLRGHTGAVTAIAFSP-RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396 (1715)
Q Consensus 319 ~-l~~L~gH~~~VtsLafSP-dg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h 396 (1715)
. ...+. .......+++.| ++. ++++-..++.|+.+|..++.....+.....
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~---lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~----------------------- 271 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGK---IYYTRYHHAMISSYDPATGTLTEEEVMMDT----------------------- 271 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCC---EEECBTTCSEEEEECTTTCCEEEEEEECSC-----------------------
T ss_pred ecccccc-ccCCCCEEEEeCCCCe---EEEEECCCCEEEEEECCCCeEEEEEeccCC-----------------------
Confidence 1 12222 234456788999 443 455556678899999876654222211000
Q ss_pred CcceeEEEEccCCC-eEEEecCCCeEEEEeCC
Q 048801 397 SHQILCCAYNANGT-VFVTGSSDTFARVWSAC 427 (1715)
Q Consensus 397 ~~~VtslafSpdG~-~LatGs~DG~IrVWDl~ 427 (1715)
...-..++|+|+|+ ++++-...+.|+.++..
T Consensus 272 ~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 272 KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp CSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 01124699999998 55555667889998865
No 325
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.36 E-value=0.14 Score=60.12 Aligned_cols=237 Identities=11% Similarity=-0.017 Sum_probs=137.5
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEE-EEeCCCeeEEEECCC----CCceEEEeCCCCCeE
Q 048801 257 FVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVA-SASNDFVIRVWRLPD----GLPISVLRGHTGAVT 331 (1715)
Q Consensus 257 ~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLA-SGS~DGtIrVWDl~t----g~~l~~L~gH~~~Vt 331 (1715)
+|+.+. ...|+..++.+......+. ....+..++|++.+..|+ +-...+.|..+++.. ......+...-....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 344443 3568999998876655554 345678999998665555 445568999999876 222233332334567
Q ss_pred EEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCe
Q 048801 332 AIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTV 411 (1715)
Q Consensus 332 sLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~ 411 (1715)
.|++.+.+.. ++++-...+.|.+.++.... ...+.. ........+++.|.+..
T Consensus 81 glavd~~~~~--ly~~d~~~~~I~~~~~~g~~-~~~~~~------------------------~~~~~P~~iavdp~~g~ 133 (316)
T 1ijq_A 81 GLAVDWIHSN--IYWTDSVLGTVSVADTKGVK-RKTLFR------------------------ENGSKPRAIVVDPVHGF 133 (316)
T ss_dssp EEEEETTTTE--EEEEETTTTEEEEEETTSSS-EEEEEE------------------------CTTCCEEEEEEETTTTE
T ss_pred EEEEeecCCe--EEEEECCCCEEEEEeCCCCc-eEEEEE------------------------CCCCCcceEEeCCCCCE
Confidence 8999875552 44555667889999876432 111110 00123678999985554
Q ss_pred -EEEecCC-CeEEEEeCCCCCccCCCCCceeeeee-cCCCCCeeEEEEccCcccccccccccccccccccccCCcccCce
Q 048801 412 -FVTGSSD-TFARVWSACKSSVEDSEQPIHELDVL-SGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDN 488 (1715)
Q Consensus 412 -LatGs~D-G~IrVWDl~t~~~~~~~~~~~~l~~l-~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~ 488 (1715)
+++.... +.|..+++.... ...+ ...-...+.|++++++ ..+
T Consensus 134 ly~~d~~~~~~I~~~~~dG~~----------~~~~~~~~~~~P~gla~d~~~-------------------------~~l 178 (316)
T 1ijq_A 134 MYWTDWGTPAKIKKGGLNGVD----------IYSLVTENIQWPNGITLDLLS-------------------------GRL 178 (316)
T ss_dssp EEEEECSSSCEEEEEETTSCC----------EEEEECSSCSCEEEEEEETTT-------------------------TEE
T ss_pred EEEEccCCCCeEEEEcCCCCC----------eEEEEECCCCCceEEEEeccC-------------------------CEE
Confidence 4444333 678888775321 1111 1223456788888754 245
Q ss_pred EEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCe
Q 048801 489 IVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCR 568 (1715)
Q Consensus 489 LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGt 568 (1715)
+++-+..+.|..+|+..... ..+ ............+++. .+.++++-...+.
T Consensus 179 Y~~D~~~~~I~~~d~dg~~~-~~~--------------------------~~~~~~~~~P~giav~-~~~ly~~d~~~~~ 230 (316)
T 1ijq_A 179 YWVDSKLHSISSIDVNGGNR-KTI--------------------------LEDEKRLAHPFSLAVF-EDKVFWTDIINEA 230 (316)
T ss_dssp EEEETTTTEEEEEETTSCSC-EEE--------------------------EECTTTTSSEEEEEEE-TTEEEEEETTTTE
T ss_pred EEEECCCCeEEEEecCCCce-EEE--------------------------eecCCccCCcEEEEEE-CCEEEEEECCCCe
Confidence 56666778899998864210 000 0000011234566664 4566666667788
Q ss_pred EEEEECCCCceEEEEec
Q 048801 569 ICVWNAVDGSLVHSLTG 585 (1715)
Q Consensus 569 I~IWDl~sg~~l~tL~g 585 (1715)
|..++..+|+.+..+..
T Consensus 231 V~~~~~~~g~~~~~i~~ 247 (316)
T 1ijq_A 231 IFSANRLTGSDVNLLAE 247 (316)
T ss_dssp EEEEETTTCCCCEEEEC
T ss_pred EEEEeCCCCcceEEEec
Confidence 99999888877666653
No 326
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.36 E-value=0.047 Score=62.54 Aligned_cols=226 Identities=11% Similarity=0.034 Sum_probs=134.6
Q ss_pred EEecCCCCCeEEEEECCCCCEEE-EEeCCCeeEEEECCCCCceEEEe-CCCCCeEEEEecCCCCcceEEEEecCCCcEEE
Q 048801 279 ASCRGHEGDITDLAVSSNNTLVA-SASNDFVIRVWRLPDGLPISVLR-GHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRI 356 (1715)
Q Consensus 279 ~tL~gHs~~VtsLafSpDg~lLA-SGS~DGtIrVWDl~tg~~l~~L~-gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrI 356 (1715)
+.+.+-...+..|+|+|++..|+ +...++.|...|+. ++.++.+. +-....-.|++.+++. ++++.-.++.+.+
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~---~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQ---FVISDERDYAIYV 95 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTE---EEEEETTTTEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCE---EEEEECCCCcEEE
Confidence 35667777899999999766554 56778899999987 88887774 2235688899988775 5566666788999
Q ss_pred EecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCC
Q 048801 357 WDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQ 436 (1715)
Q Consensus 357 WDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~ 436 (1715)
+++.....+..+..... .......+..+..++|+|.++.|.++.......||.+.. .. . ..
T Consensus 96 ~~v~~~~~i~~~~~~~~----------------~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g-~~-~-~~ 156 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKI----------------PLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG-LL-S-SN 156 (255)
T ss_dssp EEECTTCCEEEEEEEEC----------------CCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES-TT-C-SS
T ss_pred EEcCCCCeeeeeeeecc----------------ccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc-cc-c-CC
Confidence 98865442111110000 000112345588999999997777777665556666541 10 0 00
Q ss_pred Cceeeee----ecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccc
Q 048801 437 PIHELDV----LSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKV 512 (1715)
Q Consensus 437 ~~~~l~~----l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~ 512 (1715)
....+.. -..+...+.+++++|.. +.+++.......|.++|.... ...
T Consensus 157 ~l~i~~~~~~~~~~~~~d~S~l~~dp~t-------------------------g~lliLS~~s~~L~~~d~~g~-~~~-- 208 (255)
T 3qqz_A 157 ELHISKDKALQRQFTLDDVSGAEFNQQK-------------------------NTLLVLSHESRALQEVTLVGE-VIG-- 208 (255)
T ss_dssp CCEEEECHHHHHTCCSSCCCEEEEETTT-------------------------TEEEEEETTTTEEEEECTTCC-EEE--
T ss_pred ceeeecchhhccccccCCceeEEEcCCC-------------------------CeEEEEECCCCeEEEEcCCCC-EEE--
Confidence 1111100 01123456788888864 467777888888888887642 111
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEEC
Q 048801 513 GRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 574 (1715)
Q Consensus 513 ~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl 574 (1715)
.+.+.- ....+...-..-..|+|.++|++.++ +.-+.++++.-
T Consensus 209 -----~~~L~~-------------g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 209 -----EMSLTK-------------GSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp -----EEECST-------------TGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred -----EEEcCC-------------ccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 111110 00001111234678999999985554 66667777654
No 327
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.35 E-value=0.34 Score=66.91 Aligned_cols=111 Identities=15% Similarity=0.087 Sum_probs=70.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEe-cCCCCCeEEEEECCC------CCEEEEEeC-CCeeEEEECCC
Q 048801 245 AVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASC-RGHEGDITDLAVSSN------NTLVASASN-DFVIRVWRLPD 316 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL-~gHs~~VtsLafSpD------g~lLASGS~-DGtIrVWDl~t 316 (1715)
.|.+++... .+|+.++ .+.|.++.+..+.+.... ..-...|.|+++.+. +.++|.|++ |++|+|+++.+
T Consensus 515 ~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 515 NISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp CCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred EEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 466555543 3566665 577888887765432211 123568999999863 479999997 99999999987
Q ss_pred CCceEEEeC-CCCCeEEEEecCCCCcceEEEEecCCCcEEEEec
Q 048801 317 GLPISVLRG-HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDA 359 (1715)
Q Consensus 317 g~~l~~L~g-H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl 359 (1715)
.+.+....- ......++.+..-+.. .+|..|-.||.+.-+.+
T Consensus 592 l~~~~~~~L~~~~~p~si~l~~~~~~-~~L~igl~dG~l~~~~~ 634 (1158)
T 3ei3_A 592 FELLHKEMLGGEIIPRSILMTTFESS-HYLLCALGDGALFYFGL 634 (1158)
T ss_dssp CCEEEEEECCSSCCEEEEEEEEETTE-EEEEEEETTSEEEEEEE
T ss_pred CCeEEEEECCCCCCCcEEEEEEeCCC-cEEEEEeCCCeEEEEEE
Confidence 766544321 1224445544432222 37889999998866654
No 328
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.32 E-value=0.96 Score=59.50 Aligned_cols=335 Identities=11% Similarity=0.095 Sum_probs=181.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEe-cC----CCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCC
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASC-RG----HEGDITDLAVSSNNTLVASASNDFVIRVWRLPDG 317 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL-~g----Hs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg 317 (1715)
...|.++..+.+|.+.+ |+..| |..++..+++..... .. ....|.++....++..|..|+. +-|..++..++
T Consensus 145 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~ 221 (758)
T 3ott_A 145 NNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG 221 (758)
T ss_dssp CSCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT
T ss_pred CCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC
Confidence 35688998888887655 44444 777887766543221 11 1234888988877765555554 45788887766
Q ss_pred CceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCC
Q 048801 318 LPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQS 397 (1715)
Q Consensus 318 ~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~ 397 (1715)
.......-....|.++....++. |..|+.+ -|.+++..++.... +.... ........
T Consensus 222 ~~~~~~~l~~~~i~~i~~d~~g~----lWigT~~-Gl~~~~~~~~~~~~-~~~~~-----------------~~~~~l~~ 278 (758)
T 3ott_A 222 QIKQTEAFHNNSIKSLALDGNGD----LLAGTDN-GLYVYHNDTTPLQH-IIHDS-----------------RNIQSLTN 278 (758)
T ss_dssp EEEEEEEEEEEEEEEEEECTTCC----EEEEETT-EEEEECCTTSCCEE-ECCCT-----------------TCTTSCSC
T ss_pred eEEeccCCCCCeEEEEEEcCCCC----EEEEeCC-ceeEEecCCCcEEE-EEcCC-----------------CCcCcCCc
Confidence 43221111234588888777764 4555544 47788876554321 11100 00011234
Q ss_pred cceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeee--e--cCCCCCeeEEEEccCcccccccccccccc
Q 048801 398 HQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV--L--SGHENDVNYVQFSGCAVASRSAMSDAFKE 473 (1715)
Q Consensus 398 ~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~--l--~gH~~~V~sLafspdg~as~~~~~~~~~~ 473 (1715)
..|.++....+|.+-+ |+..| +.++.... . ...... . ......|.++....++
T Consensus 279 ~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~-~-------~~~~~~~~~~~~~~~~~v~~i~~D~~g------------- 335 (758)
T 3ott_A 279 NIIWNIFADQEHNIWL-GTDYG-ISLSRYNS-A-------LQFIPISQITGTGDGNQFYSLFRDSKG------------- 335 (758)
T ss_dssp SCEEEEEECTTCCEEE-EESSS-EEEECCCC---------CEEEEHHHHSCSCCCCBEEEEEECTTC-------------
T ss_pred CeEEEEEEcCCCCEEE-EeCCc-ccccccCC-c-------eeEEecccCCCCCCCceEEEEEEcCCC-------------
Confidence 5689999888887544 55556 54443211 1 111100 0 0112356666665543
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEe
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW 553 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtslaf 553 (1715)
.|..|+.+| +..++..++.... + ..+... ... ..-....|.++.-
T Consensus 336 --------------~lWiGt~~G-l~~~~~~~~~~~~-~----~~~~~~-------------~~~--~~l~~~~v~~i~~ 380 (758)
T 3ott_A 336 --------------FYWFGGANG-LIRFTDPAGERHD-A----IWYRMG-------------DKT--YPLSHNRIRHIYE 380 (758)
T ss_dssp --------------CEEEEETTE-EEEESCTTSSCCC-C----EEECTT-------------CSS--SCCSCSCEEEEEE
T ss_pred --------------CEEEeeCCc-ceeecccccccce-e----EEeccC-------------CcC--CCCCCCceEEEEE
Confidence 455555554 5556554321100 0 000000 000 0011245888888
Q ss_pred CCCCCEEEEEecCCeEEEEECCCCceEEEEe-c-----CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC-----Cce
Q 048801 554 SLDNRFVLAAIMDCRICVWNAVDGSLVHSLT-G-----HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE-----GTP 622 (1715)
Q Consensus 554 SPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~-g-----H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t-----gk~ 622 (1715)
..+|.+.+ |+ ++-|.+|+..+++...... . ....|.++.... ++.+. .|+..+-|.++|..+ +..
T Consensus 381 d~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lW-igT~~~Gl~~~~~~~~~~~~~~~ 456 (758)
T 3ott_A 381 DKEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQLW-ISTCLGGIFVVDKHKLMQSTSGQ 456 (758)
T ss_dssp CTTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSEEE-EEESSSCEEEEEHHHHHHCCSSE
T ss_pred CCCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCCEE-EEECCCceEEEccccccccCCcc
Confidence 88887554 55 4579999988876543221 1 234578887765 44444 466666688888542 111
Q ss_pred E---EEEEc----ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 623 I---RIYEI----GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 623 l---~tl~~----h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
. ..+.. ....|.++...++|.+-+.++..+.|..++..+++..
T Consensus 457 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~ 506 (758)
T 3ott_A 457 YIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVT 506 (758)
T ss_dssp EECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEE
T ss_pred eecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceE
Confidence 2 12221 1224888999999997764444566888998776533
No 329
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.32 E-value=0.019 Score=70.91 Aligned_cols=154 Identities=7% Similarity=0.074 Sum_probs=97.1
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeC-CC----eeEEEECCCCC
Q 048801 245 AVYCAIFDR-SGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASN-DF----VIRVWRLPDGL 318 (1715)
Q Consensus 245 ~Vt~VafSp-DG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~-DG----tIrVWDl~tg~ 318 (1715)
....|+++| ++..|+.+...+.|+.+|+.++....... .......|+|+++|++|+.+.. .+ .+.+.+ ..+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCc
Confidence 457889998 45566666555889999998766544433 5566889999999996666654 22 233333 3343
Q ss_pred ce--EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCC
Q 048801 319 PI--SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQ 396 (1715)
Q Consensus 319 ~l--~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h 396 (1715)
.. ..+. .......+++.|++.. ++++-..++.|..++..++......... .
T Consensus 216 ~~~~~~l~-~~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~------------------------~ 268 (430)
T 3tc9_A 216 FKVITELT-KGQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQ------------------------D 268 (430)
T ss_dssp SCSEEEEE-ECSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECS------------------------S
T ss_pred eeeeeeec-cCCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcC------------------------C
Confidence 32 3333 2234577889994332 5556667788999998755421111110 0
Q ss_pred CcceeEEEEccCCC-eEEEecCCCeEEEEeCC
Q 048801 397 SHQILCCAYNANGT-VFVTGSSDTFARVWSAC 427 (1715)
Q Consensus 397 ~~~VtslafSpdG~-~LatGs~DG~IrVWDl~ 427 (1715)
......++|+|+|+ ++++-...+.|..++..
T Consensus 269 ~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 269 SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp SSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 12357899999999 55555667889998765
No 330
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.24 E-value=0.22 Score=60.75 Aligned_cols=244 Identities=10% Similarity=-0.061 Sum_probs=143.3
Q ss_pred EEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCC---cceecCCCCCC
Q 048801 299 LVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQY---SPRIYLPKPPD 375 (1715)
Q Consensus 299 lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~---l~~i~~~~~~~ 375 (1715)
+|+.+. ...|+..++........+. ....+.+|+|.+.... ++++-...+.|..+++..... ...+.
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~--lywsD~~~~~I~~~~~~g~~~~~~~~~~~------ 154 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNR--IYWSDLSQRMICSTQLDRAHGVSSYDTVI------ 154 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTE--EEEEETTTTEEEEEEC------CCCEEEE------
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCc--eEEEecCCCeEEEEEcccCCCCCcceEEE------
Confidence 444443 4688888987665555444 4567899999987652 445555678888888764220 00100
Q ss_pred CccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEE
Q 048801 376 AITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYV 454 (1715)
Q Consensus 376 ~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sL 454 (1715)
.........+++.+ .+.++++-...+.|.+.++.... ....+.........|
T Consensus 155 ------------------~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~---------~~~l~~~~~~~P~~i 207 (400)
T 3p5b_L 155 ------------------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---------RKTLFRENGSKPRAI 207 (400)
T ss_dssp ------------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS---------EEEEEECSSCCEEEE
T ss_pred ------------------eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc---------eEEEEeCCCCCcceE
Confidence 00122467889987 56666666678899999886431 111222233356788
Q ss_pred EEccCcccccccccccccccccccccCCcccCceEEEEcC-CCeEEEEecCCCccCcccccccccccccCCCCCCCCCCC
Q 048801 455 QFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR-DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPP 533 (1715)
Q Consensus 455 afspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~-DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 533 (1715)
++.|.+ +.++++-.. .+.|...++....
T Consensus 208 avdp~~-------------------------g~ly~td~~~~~~I~~~~~dG~~-------------------------- 236 (400)
T 3p5b_L 208 VVDPVH-------------------------GFMYWTDWGTPAKIKKGGLNGVD-------------------------- 236 (400)
T ss_dssp EEETTT-------------------------TEEEEEECSSSCCEEEEETTSCS--------------------------
T ss_pred EEeccc-------------------------CeEEEEeCCCCCEEEEEeCCCCc--------------------------
Confidence 888753 123333322 3567666665311
Q ss_pred CCCCcccc-cCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCceEEEEec--CCCCeEEEEEccCCCcEEEEEeCC
Q 048801 534 RGGPRQRL-LPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGSLVHSLTG--HSASSYVLDVHPFNPRIAMSAGYD 609 (1715)
Q Consensus 534 ~g~~~~~l-~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~~l~tL~g--H~~~V~sLafSP~dg~lLaSgs~D 609 (1715)
...+ ...-...+.|++++++..|+.+. ..+.|..+|+........+.. .-....+|++ +++.++++-...
T Consensus 237 ----~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lywtd~~~ 310 (400)
T 3p5b_L 237 ----IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIIN 310 (400)
T ss_dssp ----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEEEESSS
T ss_pred ----cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEEecCCC
Confidence 0011 11123568899998777766654 467899999865433333332 2334567777 356777787788
Q ss_pred CcEEEEECCCCceEEEEEcccceEEEE
Q 048801 610 GRTIVWDIWEGTPIRIYEIGRFKLVDG 636 (1715)
Q Consensus 610 GtI~VWDl~tgk~l~tl~~h~~~V~sv 636 (1715)
+.|..+|..+|+.+..+........++
T Consensus 311 ~~V~~~~~~~G~~~~~i~~~~~~p~~i 337 (400)
T 3p5b_L 311 EAIFSANRLTGSDVNLLAENLLSPEDM 337 (400)
T ss_dssp CSEEEEESSSCCCCEEEECSCSCEEEE
T ss_pred CeEEEEEcCCCCceEEEecCCCCCceE
Confidence 899999988888777776433334443
No 331
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.22 E-value=0.083 Score=62.40 Aligned_cols=202 Identities=8% Similarity=-0.113 Sum_probs=122.0
Q ss_pred ceeEEEEccC-CCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccc
Q 048801 399 QILCCAYNAN-GTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVP 477 (1715)
Q Consensus 399 ~VtslafSpd-G~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~ 477 (1715)
.+..++|++. +.++++-...+.|..+++..... ....+...-.....+++.+.+
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~--------~~~~~~~~l~~p~glavd~~~----------------- 90 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES--------VQNVVVSGLLSPDGLACDWLG----------------- 90 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC--------CCEEEEECCSCCCEEEEETTT-----------------
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc--------eEEEEcCCCCCccEEEEEcCC-----------------
Confidence 3678899884 55666666778899998865321 001111112234566666532
Q ss_pred cccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC
Q 048801 478 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN 557 (1715)
Q Consensus 478 ~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG 557 (1715)
+.++++-...+.|.++++...... ............+++.|.+
T Consensus 91 --------g~ly~~d~~~~~I~~~~~dG~~~~-----------------------------~l~~~~~~~P~giavdp~~ 133 (318)
T 3sov_A 91 --------EKLYWTDSETNRIEVSNLDGSLRK-----------------------------VLFWQELDQPRAIALDPSS 133 (318)
T ss_dssp --------TEEEEEETTTTEEEEEETTSCSCE-----------------------------EEECSSCSSEEEEEEEGGG
T ss_pred --------CeEEEEECCCCEEEEEECCCCcEE-----------------------------EEEeCCCCCccEEEEeCCC
Confidence 356666667788888887642100 0001122346789999876
Q ss_pred CEEEEEec--CCeEEEEECCCCceEEEE-ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEc-ccceE
Q 048801 558 RFVLAAIM--DCRICVWNAVDGSLVHSL-TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEI-GRFKL 633 (1715)
Q Consensus 558 ~~LaTgs~--DGtI~IWDl~sg~~l~tL-~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~-h~~~V 633 (1715)
.+|+.+.. .+.|...++. |.....+ ...-...+.|+++++++++.++-...+.|..+|+.. .....+.. .....
T Consensus 134 g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P 211 (318)
T 3sov_A 134 GFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-TNRQAVVKGSLPHP 211 (318)
T ss_dssp TEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSCCSCE
T ss_pred CEEEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC-CceEEEecCCCCCc
Confidence 66665553 5788888875 4333333 333345689999997777877777788999999854 33333332 23345
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 634 VDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 634 ~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
..+++.. +.++.+-...+.|..++..+|+..
T Consensus 212 ~glav~~-~~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 212 FALTLFE-DILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp EEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred eEEEEeC-CEEEEEecCCCeEEEEECCCCCce
Confidence 5677643 333334445678999998777644
No 332
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.17 E-value=0.28 Score=59.68 Aligned_cols=248 Identities=9% Similarity=-0.032 Sum_probs=144.2
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEE-eCCCeeEEEECCCC----CceEEEeCCCCCeE
Q 048801 257 FVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASA-SNDFVIRVWRLPDG----LPISVLRGHTGAVT 331 (1715)
Q Consensus 257 ~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASG-S~DGtIrVWDl~tg----~~l~~L~gH~~~Vt 331 (1715)
+|+.+. ...|+..++........+. ....+..|+|++.+..|+.+ ...+.|..+++... .....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 555554 3688888988765544444 45678899999866555554 45688999998652 23344443455678
Q ss_pred EEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCe
Q 048801 332 AIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTV 411 (1715)
Q Consensus 332 sLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~ 411 (1715)
.|++.+.+.. ++++-...+.|.+.++........+. ........|++.|.+..
T Consensus 163 glavD~~~~~--lY~~d~~~~~I~~~~~~g~~~~~l~~-------------------------~~~~~P~~iavdp~~g~ 215 (400)
T 3p5b_L 163 GLAVDWIHSN--IYWTDSVLGTVSVADTKGVKRKTLFR-------------------------ENGSKPRAIVVDPVHGF 215 (400)
T ss_dssp EEEEETTTTE--EEEEETTTTEEEEECTTTCSEEEEEE-------------------------CSSCCEEEEEEETTTTE
T ss_pred cEEEEecCCc--eEEEECCCCeEEEEeCCCCceEEEEe-------------------------CCCCCcceEEEecccCe
Confidence 8999885542 45555667888888876443211110 01223678999986554
Q ss_pred EEEec-C-CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceE
Q 048801 412 FVTGS-S-DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNI 489 (1715)
Q Consensus 412 LatGs-~-DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~L 489 (1715)
|.... . .+.|...++..... .......-...+.|++++.+ ..++
T Consensus 216 ly~td~~~~~~I~~~~~dG~~~---------~~~~~~~l~~P~glavd~~~-------------------------~~lY 261 (400)
T 3p5b_L 216 MYWTDWGTPAKIKKGGLNGVDI---------YSLVTENIQWPNGITLDLLS-------------------------GRLY 261 (400)
T ss_dssp EEEEECSSSCCEEEEETTSCSC---------EEEECSSCSCEEEEEEETTT-------------------------TEEE
T ss_pred EEEEeCCCCCEEEEEeCCCCcc---------EEEEECCCCceEEEEEEeCC-------------------------CEEE
Confidence 44433 2 46788888764211 11122223456788888754 2455
Q ss_pred EEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeE
Q 048801 490 VTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRI 569 (1715)
Q Consensus 490 aSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI 569 (1715)
++-+..+.|..+|+...... .+ ............|++ ..+.++++....+.|
T Consensus 262 ~aD~~~~~I~~~d~dG~~~~-~~--------------------------~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V 313 (400)
T 3p5b_L 262 WVDSKLHSISSIDVNGGNRK-TI--------------------------LEDEKRLAHPFSLAV-FEDKVFWTDIINEAI 313 (400)
T ss_dssp EEETTTTEEEEEETTSCCCE-EE--------------------------EECSSTTSSEEEEEE-ETTEEEEEESSSCSE
T ss_pred EEECCCCEEEEEeCCCCccE-EE--------------------------EeCCCCCCCCEEEEE-eCCEEEEecCCCCeE
Confidence 55566778888887642110 00 000001122345565 244555666667889
Q ss_pred EEEECCCCceEEEEecCCCCeEEEEE
Q 048801 570 CVWNAVDGSLVHSLTGHSASSYVLDV 595 (1715)
Q Consensus 570 ~IWDl~sg~~l~tL~gH~~~V~sLaf 595 (1715)
..++..+|+.+..+.........|.+
T Consensus 314 ~~~~~~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 314 FSANRLTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp EEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred EEEEcCCCCceEEEecCCCCCceEEE
Confidence 99998888877777654444455543
No 333
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.16 E-value=0.13 Score=60.81 Aligned_cols=231 Identities=9% Similarity=-0.057 Sum_probs=135.6
Q ss_pred CCeeEEEECCCCC-ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCC
Q 048801 306 DFVIRVWRLPDGL-PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVP 384 (1715)
Q Consensus 306 DGtIrVWDl~tg~-~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~ 384 (1715)
...|+..++.... ....+......+.+|+|.+.... ++++-...+.|..+++..+.....+..
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~--lyw~D~~~~~I~r~~~~g~~~~~~~~~-------------- 75 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGL--IYWSDVSEEAIKRTEFNKTESVQNVVV-------------- 75 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTE--EEEEETTTTEEEEEETTSSSCCCEEEE--------------
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCE--EEEEECCCCcEEEEEccCCCceEEEEc--------------
Confidence 4579999987663 12222222345678999986552 455656678888888875532111100
Q ss_pred CCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccc
Q 048801 385 SNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVAS 463 (1715)
Q Consensus 385 ~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as 463 (1715)
..-.....+++.+ .+.++++-...+.|.++++..... ...+.........+++.|.+
T Consensus 76 ----------~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~---------~~l~~~~~~~P~giavdp~~--- 133 (318)
T 3sov_A 76 ----------SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR---------KVLFWQELDQPRAIALDPSS--- 133 (318)
T ss_dssp ----------ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC---------EEEECSSCSSEEEEEEEGGG---
T ss_pred ----------CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE---------EEEEeCCCCCccEEEEeCCC---
Confidence 0012256788886 556666666778999999864311 11122333456788888753
Q ss_pred cccccccccccccccccCCcccCceEEEEc-CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccc-
Q 048801 464 RSAMSDAFKEENVPKFKNSWFCHDNIVTCS-RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRL- 541 (1715)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l- 541 (1715)
+.++++-. ..+.|...++.... ...+
T Consensus 134 ----------------------g~ly~td~~~~~~I~r~~~dG~~------------------------------~~~~~ 161 (318)
T 3sov_A 134 ----------------------GFMYWTDWGEVPKIERAGMDGSS------------------------------RFIII 161 (318)
T ss_dssp ----------------------TEEEEEECSSSCEEEEEETTSCS------------------------------CEEEE
T ss_pred ----------------------CEEEEEecCCCCEEEEEEcCCCC------------------------------eEEEE
Confidence 12333332 34667777665311 0001
Q ss_pred cCCCCCeeEEEeCCCCCEEEEE-ecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC
Q 048801 542 LPTPRGVNMIVWSLDNRFVLAA-IMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG 620 (1715)
Q Consensus 542 ~~h~~~VtslafSPDG~~LaTg-s~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg 620 (1715)
...-...+.|+|++++..|+.+ +..+.|..+++........+.+......++++. .+.++++-...+.|..++..+|
T Consensus 162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEecCCCeEEEEECCCC
Confidence 0112345789999976666555 456789999986433333333344556778774 4567777777889999999888
Q ss_pred ceEEEEEc
Q 048801 621 TPIRIYEI 628 (1715)
Q Consensus 621 k~l~tl~~ 628 (1715)
+.+..+..
T Consensus 240 ~~~~~i~~ 247 (318)
T 3sov_A 240 EGLREIHS 247 (318)
T ss_dssp CSCEEEEC
T ss_pred CceEEEeC
Confidence 87766653
No 334
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.14 E-value=0.064 Score=66.14 Aligned_cols=257 Identities=7% Similarity=-0.031 Sum_probs=140.8
Q ss_pred CeEEEEECC-CCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecC-CC---cEEEEecCC
Q 048801 287 DITDLAVSS-NNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSD-DG---TCRIWDARY 361 (1715)
Q Consensus 287 ~VtsLafSp-Dg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~-DG---tVrIWDl~t 361 (1715)
....|+|+| ++..|+.+...+.|+++|+..+... .+.........|+|++++. .|+.+.. ++ ...+|-...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~---~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEAD---SMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEECCCSCEEEEEECTTSS---EEEEEECCSCTTSEEEEEEEGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEecCCCCcceEEEeCCCC---EEEEEeCCCCcccceEEEEeCC
Confidence 457899998 4556666655588999998766543 4444556688999999987 4444433 22 122332233
Q ss_pred CCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCcee
Q 048801 362 SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHE 440 (1715)
Q Consensus 362 g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~ 440 (1715)
+.......+ ........++++| +|.++++-..++.|..|+..++.. ..
T Consensus 214 g~~~~~~~l------------------------~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~-------~~ 262 (430)
T 3tc9_A 214 SGFKVITEL------------------------TKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET-------TP 262 (430)
T ss_dssp GTSCSEEEE------------------------EECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE-------EE
T ss_pred Cceeeeeee------------------------ccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE-------EE
Confidence 322210000 0012356788999 778777777788999999875321 01
Q ss_pred eeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCc-eEEEEcCCCeEEEEecCCCc-cCccccccccc
Q 048801 441 LDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHD-NIVTCSRDGSAIIWIPRSRR-SHGKVGRWTRA 518 (1715)
Q Consensus 441 l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~-~LaSgS~DGsIrIWDl~t~~-~~~~~~~~~~~ 518 (1715)
+.... .......++|+|++ + ++++-...+.|..++..... .......+...
T Consensus 263 ~~~~~-~~~~P~gia~~pdG--------------------------~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~ 315 (430)
T 3tc9_A 263 LFTIQ-DSGWEFHIQFHPSG--------------------------NYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQ 315 (430)
T ss_dssp EEECS-SSSCCEEEEECTTS--------------------------SEEEEEETTTTEEEEEEEETTTTEECCCEEEEEC
T ss_pred EEEcC-CCCcceeEEEcCCC--------------------------CEEEEEECCCCEEEEEeCCcccccccceEEEecc
Confidence 11111 12346789999986 4 56666778889998765311 00000000000
Q ss_pred ccccCCCCCCCCCCCCCCCcccccCCCCCee-EEEeC--------CCCCEEEEEecCCeEEEEECCCCceEEEEec----
Q 048801 519 YHLKVPPPPLPPQPPRGGPRQRLLPTPRGVN-MIVWS--------LDNRFVLAAIMDCRICVWNAVDGSLVHSLTG---- 585 (1715)
Q Consensus 519 ~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vt-slafS--------PDG~~LaTgs~DGtI~IWDl~sg~~l~tL~g---- 585 (1715)
. .... ...+ . .....-.... .+++. ++|.++++-...+.|+.++ .+|........
T Consensus 316 ~----g~~g----~~dg-~--~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~ 383 (430)
T 3tc9_A 316 Q----GAKD----WVDG-V--GKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNG 383 (430)
T ss_dssp T----TCBC----CBCE-E--GGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTS
T ss_pred C----CCCC----CCCC-C--CcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCC
Confidence 0 0000 0000 0 0000011122 45553 4566777666778899988 45654333321
Q ss_pred C----C---------CCeEEEEEccCCCcEEEEEeCCCcEEEEEC
Q 048801 586 H----S---------ASSYVLDVHPFNPRIAMSAGYDGRTIVWDI 617 (1715)
Q Consensus 586 H----~---------~~V~sLafSP~dg~lLaSgs~DGtI~VWDl 617 (1715)
. . .....|++.|+++.++++-...++|+.+++
T Consensus 384 ~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 384 TSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp SSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 0 1 146788888855677777666777887765
No 335
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.08 E-value=0.59 Score=64.60 Aligned_cols=129 Identities=18% Similarity=0.206 Sum_probs=74.3
Q ss_pred CCEEEEEe----------cCCeEEEEECCCCceEEEE-ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEE
Q 048801 557 NRFVLAAI----------MDCRICVWNAVDGSLVHSL-TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRI 625 (1715)
Q Consensus 557 G~~LaTgs----------~DGtI~IWDl~sg~~l~tL-~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~t 625 (1715)
..+|++|+ ..|.|++|++..+++.... ....+.|++|+-- +++++++. ..+|+||++...+.++
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla~i--g~~l~vy~l~~~~~L~- 918 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLASI--NSTVRLYEWTTEKELR- 918 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEEEE--TTEEEEEEECTTSCEE-
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEEEc--CCEEEEEECCCCceEE-
Confidence 46788776 3578999998755433222 2346778887643 56666544 4789999998766554
Q ss_pred EEc-ccceEEEEEEcCCCCEEEEEeCCCeEEEEE--CCCCcccc---cc----ccceeecCCCccEEEcCCCCee
Q 048801 626 YEI-GRFKLVDGKFSPDGTSIVLSDDVGQIYLLN--TGQGESQK---DA----KYDQFFLGDYRPLIRDSLGNVL 690 (1715)
Q Consensus 626 l~~-h~~~V~svafSPDG~~LAsgs~DG~I~IWd--l~tGe~~k---~~----~~~~~fs~D~r~L~~d~~g~vl 690 (1715)
... +...|..+...-.|.++++|+.-..|.++. ...++... +. .....|..+...+..|..|++.
T Consensus 919 ~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~ 993 (1158)
T 3ei3_A 919 TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLF 993 (1158)
T ss_dssp EEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEE
T ss_pred EEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEE
Confidence 221 111233333334678999999887777754 33333221 11 1122344344455566666654
No 336
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.98 E-value=0.19 Score=61.99 Aligned_cols=257 Identities=9% Similarity=0.043 Sum_probs=141.1
Q ss_pred CeEEEEECCC--CCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCC---Cc-EEEEecC
Q 048801 287 DITDLAVSSN--NTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDD---GT-CRIWDAR 360 (1715)
Q Consensus 287 ~VtsLafSpD--g~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~D---Gt-VrIWDl~ 360 (1715)
....|+|+|+ +..|+.+...+.|+.+++.++.... +........+|+|++++. ++++.... .. +...+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~---lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGD---MVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCC---EEEEECCSCTTSEEEEEECGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECCCCC---EEEEcCCCCcccceEEEEECC
Confidence 4568999984 3445555444889999987776544 444455689999999987 34443321 11 2222221
Q ss_pred CCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCce
Q 048801 361 YSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIH 439 (1715)
Q Consensus 361 tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~ 439 (1715)
+....... .........+++++ +|.++++-..++.|+.++..++... .
T Consensus 216 -~~~~~~~~------------------------~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~------~ 264 (433)
T 4hw6_A 216 -SGFTERLS------------------------LCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT------E 264 (433)
T ss_dssp -GTTCCEEE------------------------EEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE------E
T ss_pred -CCeecccc------------------------ccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE------E
Confidence 11100000 00122346688999 7777777777889999998754320 1
Q ss_pred eeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCC--CccCcccccccc
Q 048801 440 ELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS--RRSHGKVGRWTR 517 (1715)
Q Consensus 440 ~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t--~~~~~~~~~~~~ 517 (1715)
.+.. .+....-..++|+|++ ..++++-...+.|..+++.. +... ....+..
T Consensus 265 ~~~~-~~~~~~~~~ia~dpdG-------------------------~~LYvad~~~~~I~~~~~d~~~~~~~-~~~~~ag 317 (433)
T 4hw6_A 265 EEVM-MDTKGSNFHIVWHPTG-------------------------DWAYIIYNGKHCIYRVDYNRETGKLA-VPYIVCG 317 (433)
T ss_dssp EEEE-CSCCSSCEEEEECTTS-------------------------SEEEEEETTTTEEEEEEBCTTTCCBC-CCEEEEE
T ss_pred EEec-cCCCCCcccEEEeCCC-------------------------CEEEEEeCCCCEEEEEeCCCCCcccC-cEEEEEe
Confidence 1111 1112223468999886 12566667778899987652 2110 0000000
Q ss_pred cccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEe---------CCCCCEEEEEecCCeEEEEECCCCceEEEEecCC-
Q 048801 518 AYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW---------SLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHS- 587 (1715)
Q Consensus 518 ~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtslaf---------SPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~- 587 (1715)
.. ..... ..+ ......-.....+++ ..+|.++++-...+.|++++. +|.. .++.+..
T Consensus 318 ~~----g~~g~----~dg---~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~ 384 (433)
T 4hw6_A 318 QH----SSPGW----VDG---MGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGN 384 (433)
T ss_dssp CT----TCCCC----BCE---EGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE-EEEECCCT
T ss_pred cC----CCCcc----CCC---cccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCE-EEEEeCCC
Confidence 00 00000 000 000111223567888 778888887777889999985 6643 3333221
Q ss_pred -----------------CCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 588 -----------------ASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 588 -----------------~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
.....|++.|.++.++++-...++|+.++++
T Consensus 385 ~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 385 SREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 1256788885467777766667777777653
No 337
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.87 E-value=0.86 Score=53.65 Aligned_cols=275 Identities=13% Similarity=0.098 Sum_probs=160.1
Q ss_pred CCCcEEEEeCCCCcEEEE-ecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCc
Q 048801 263 DDRLVKIWSMETAFCLAS-CRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSA 341 (1715)
Q Consensus 263 ~DGtIrIWDl~tgk~l~t-L~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~ 341 (1715)
.+..|.|-|+..+..... --.-. +.-.+|..+.||.-. ..++.|+|+++...+..+.- ...|.-=.|-.+..
T Consensus 47 ~~~~VvIiDl~n~~~~~Rrpi~Ad----sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~~- 119 (365)
T 2xzh_A 47 EQAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT- 119 (365)
T ss_dssp TEEEEEEEETTSTTSCEEEECCCS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSE-
T ss_pred CCCEEEEEECCCCCCccccccccc----eeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCCe-
Confidence 344788999987654322 12122 234588888888765 67999999999988888774 45677777776653
Q ss_pred ceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecC----
Q 048801 342 IYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSS---- 417 (1715)
Q Consensus 342 ~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~---- 417 (1715)
|+..+ +..|.-|++.... .+...+... ......+|..-..+++.++++..+-
T Consensus 120 ---L~lVT-~taVyHWs~~~~s-~P~kvFdR~-------------------~~L~~~QIInY~~d~~~kW~~l~GI~~~~ 175 (365)
T 2xzh_A 120 ---VALVT-DNAVYHWSMEGES-QPVKMFDRH-------------------SSLAGCQIINYRTDAKQKWLLLTGISAQQ 175 (365)
T ss_dssp ---EEEEE-SSEEEEEESSTTC-CCEEEEECC-------------------GGGTTCEEEEEEECTTSCEEEEEEEEEET
T ss_pred ---EEEEc-CCcEEEEcccCCC-CCceeeecc-------------------hhcccceEEEEEECCCCCEEEEEeEeccC
Confidence 33333 3469999986522 111111110 0112467888888999998776542
Q ss_pred ---CCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcC
Q 048801 418 ---DTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR 494 (1715)
Q Consensus 418 ---DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~ 494 (1715)
.|.+.+|..... ..+.+.||...-..+.+..+.. ....|+.+..
T Consensus 176 ~~v~G~mQLYS~er~----------~sQ~ieGhaa~F~~~~~~g~~~-----------------------~~~lf~fa~r 222 (365)
T 2xzh_A 176 NRVVGAMQLYSVDRK----------VSQPIEGHAASFAQFKMEGNAE-----------------------ESTLFCFAVR 222 (365)
T ss_dssp TEEEEEEEEEETTTT----------EEEEECCSEEEEEEECCTTCSS-----------------------CEEEEEEEEE
T ss_pred CccceeEEEEeeccc----------ccceeeeeeeeeEEEecCCCCC-----------------------CceEEEEEEe
Confidence 478889988753 3456778765443333322110 0122332222
Q ss_pred ---CCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEE
Q 048801 495 ---DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICV 571 (1715)
Q Consensus 495 ---DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~I 571 (1715)
.+.+.|-++..... +...-..+...+..++ .....-..++..|+.-..+..-+.-|.|++
T Consensus 223 ~~~g~kLhIiEi~~~~~-~~~~f~kk~vdi~fpp----------------ea~~DFPVamqvs~kygviyviTK~G~ihl 285 (365)
T 2xzh_A 223 GQAGGKLHIIEVGTPPT-GNQPFPKKAVDVFFPP----------------EAQNDFPVAMQISEKHDVVFLITKYGYIHL 285 (365)
T ss_dssp ETTEEEEEEEECSSCCT-TCCCCCCEEEEECCCT----------------TCTTCCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred cCCCcEEEEEEcCCCCC-CCCCcccccceeeCCc----------------cccCCceEEEEecccCCEEEEEeCCcEEEE
Confidence 25788887753200 0000000011111110 011223456788888888999999999999
Q ss_pred EECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC
Q 048801 572 WNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 572 WDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t 619 (1715)
||+.+|.++..-+-....|..-+.+...+-++ .....|.|.--.+..
T Consensus 286 yDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~-~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 286 YDLETGTCIYMNRISGETIFVTAPHEATAGII-GVNRKGQVLSVCVEE 332 (365)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEEEGGGTEEE-EEETTCEEEEEEECT
T ss_pred EEcccCcEEEEeccCCCceEEecccCCCCcEE-EEcCCCEEEEEEECc
Confidence 99999999988776777776655544233333 334666665555444
No 338
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.84 E-value=0.23 Score=65.88 Aligned_cols=206 Identities=10% Similarity=-0.046 Sum_probs=122.2
Q ss_pred ceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccc
Q 048801 399 QILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVP 477 (1715)
Q Consensus 399 ~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~ 477 (1715)
.+..++|.+ ++.++++-...+.|+.+++...... ......+.........|++...+
T Consensus 425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~-----~~~~~vi~~~l~~P~GLAvD~~~----------------- 482 (791)
T 3m0c_C 425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----SSYDTVISRDIQAPDGLAVDWIH----------------- 482 (791)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC-------------CEEEECSSCSCCCEEEEETTT-----------------
T ss_pred ceEEEeecccCCeeEEeeccceeEEEEeccCCCCC-----cceeEEEecCCCCcceeeeeecC-----------------
Confidence 467899988 4556666666788888888642100 01112222233345567776543
Q ss_pred cccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCC
Q 048801 478 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDN 557 (1715)
Q Consensus 478 ~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG 557 (1715)
..++++-...+.|.+.++....... .+.........|+++|.+
T Consensus 483 --------~~LY~tD~~~~~I~v~~ldG~~~~~-----------------------------l~~~~l~~P~gIaVDp~~ 525 (791)
T 3m0c_C 483 --------SNIYWTDSVLGTVSVADTKGVKRKT-----------------------------LFRENGSKPRAIVVDPVH 525 (791)
T ss_dssp --------TEEEEEETTTTEEEEEETTSSSEEE-----------------------------EEECTTCCEEEEEEETTT
T ss_pred --------CcEEEEecCCCeEEEEeCCCCeEEE-----------------------------EEeCCCCCcceEEEecCC
Confidence 3566777778889888876422000 001122347889999986
Q ss_pred CEEEEEec-C-CeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcc--cceE
Q 048801 558 RFVLAAIM-D-CRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIG--RFKL 633 (1715)
Q Consensus 558 ~~LaTgs~-D-GtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h--~~~V 633 (1715)
.+|+.+.. . +.|.+.++........+...-...+.|++.+.+++++++-...+.|...++........+... -...
T Consensus 526 g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P 605 (791)
T 3m0c_C 526 GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHP 605 (791)
T ss_dssp TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSE
T ss_pred CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCC
Confidence 66665543 2 688888885443333333344568899999877777777667788999998544433333321 1234
Q ss_pred EEEEEcCCCCEEEEEe-CCCeEEEEECCCCccc
Q 048801 634 VDGKFSPDGTSIVLSD-DVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 634 ~svafSPDG~~LAsgs-~DG~I~IWdl~tGe~~ 665 (1715)
..|++ ++..|+.++ ..+.|...+..+|+.+
T Consensus 606 ~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 606 FSLAV--FEDKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp EEEEE--ETTEEEEEETTTTEEEEEETTTCCCC
T ss_pred CEEEE--eCCEEEEEECCCCEEEEEeCCCCcce
Confidence 45665 344566555 4578888887777544
No 339
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.78 E-value=0.28 Score=61.39 Aligned_cols=168 Identities=8% Similarity=0.026 Sum_probs=97.6
Q ss_pred CeEEEEEcC-CCCEEEEE-eCCCcEEEEeCCCCcEEEEecCC---CCCeEEEEE-------CCCCCEEEEEeCCC-----
Q 048801 245 AVYCAIFDR-SGRFVITG-SDDRLVKIWSMETAFCLASCRGH---EGDITDLAV-------SSNNTLVASASNDF----- 307 (1715)
Q Consensus 245 ~Vt~VafSp-DG~~LaTG-S~DGtIrIWDl~tgk~l~tL~gH---s~~VtsLaf-------SpDg~lLASGS~DG----- 307 (1715)
.-..|+|+| ++..|+.+ ...+.|++.|+.++.....+... ......|+| +++|.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 356899998 34444444 44567999999887666555432 235899999 99999777666544
Q ss_pred --eeEEEECCC-CCce-----EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecC-------CCCCcceecCCC
Q 048801 308 --VIRVWRLPD-GLPI-----SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR-------YSQYSPRIYLPK 372 (1715)
Q Consensus 308 --tIrVWDl~t-g~~l-----~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~-------tg~~l~~i~~~~ 372 (1715)
.|.+.+... |... ..+.. -.....++++|++.. ++++-..++.|..+|+. ++..-.... +.
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~--LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~-~~ 295 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGE--LYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV-KN 295 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCC--EEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG-GG
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCe--EEEEECCCCEEEEEecccccccccCceeecccc-cc
Confidence 255665433 2221 22321 123467888996553 56667778889999987 444300000 00
Q ss_pred CCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCe-EEEecCCCeEEEEeCC
Q 048801 373 PPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTV-FVTGSSDTFARVWSAC 427 (1715)
Q Consensus 373 ~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~-LatGs~DG~IrVWDl~ 427 (1715)
..... .. . ...........|+|+|+|++ +++-+..+.|+.++..
T Consensus 296 ~~g~~-~~---------l-~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 296 NPNTF-KQ---------L-FTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp CTTTE-EE---------E-EECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccccc-ce---------e-EecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 00000 00 0 00011233578999999994 5555667888886653
No 340
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.68 E-value=0.4 Score=63.57 Aligned_cols=231 Identities=10% Similarity=-0.066 Sum_probs=133.9
Q ss_pred CCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCc--ceecCCCCCCCccCccC
Q 048801 305 NDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS--PRIYLPKPPDAITGKSN 382 (1715)
Q Consensus 305 ~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l--~~i~~~~~~~~i~g~~~ 382 (1715)
....|+..++........+. ....+.+|+|.+.... ++++-...+.|+.+++...... ....+
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~--lY~sD~~~~~I~~~~l~g~~~~~~~~~vi------------ 466 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNR--IYWSDLSQRMICSTQLDRAHGVSSYDTVI------------ 466 (791)
T ss_dssp CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTE--EEEEETTTTEEEEEEC--------CEEEE------------
T ss_pred cccceeEeeccCCcceeeec-CCCceEEEeecccCCe--eEEeeccceeEEEEeccCCCCCcceeEEE------------
Confidence 34568888887665544444 4566789999986552 4555566788888887643210 00000
Q ss_pred CCCCCCCCCCCCCCCcceeEEEEccCC-CeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcc
Q 048801 383 VPSNNGPSSSNGLQSHQILCCAYNANG-TVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAV 461 (1715)
Q Consensus 383 ~~~~~~~~~~~~~h~~~VtslafSpdG-~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~ 461 (1715)
.........|++.+.+ +++++-...+.|.+.++.... ....+.........|++.|..
T Consensus 467 -----------~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~---------~~~l~~~~l~~P~gIaVDp~~- 525 (791)
T 3m0c_C 467 -----------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---------RKTLFRENGSKPRAIVVDPVH- 525 (791)
T ss_dssp -----------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS---------EEEEEECTTCCEEEEEEETTT-
T ss_pred -----------ecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe---------EEEEEeCCCCCcceEEEecCC-
Confidence 0012235678898766 566666678899999986431 111222333457788888753
Q ss_pred cccccccccccccccccccCCcccCceEEEEcCC-CeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc
Q 048801 462 ASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRD-GSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR 540 (1715)
Q Consensus 462 as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~D-GsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 540 (1715)
+.++++-... +.|.+.++.... ...
T Consensus 526 ------------------------g~LYwtD~g~~~~I~~~~~dG~~------------------------------~~~ 551 (791)
T 3m0c_C 526 ------------------------GFMYWTDWGTPAKIKKGGLNGVD------------------------------IYS 551 (791)
T ss_dssp ------------------------TEEEEEECSSSCEEEEEETTSCC------------------------------EEE
T ss_pred ------------------------CCEEEecCCCCCeEEEEecCCCc------------------------------eEE
Confidence 1233333222 567766665311 011
Q ss_pred cc-CCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCceEEEEecC--CCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 541 LL-PTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGSLVHSLTGH--SASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 541 l~-~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~~l~tL~gH--~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
+. ......+.|++++.+..|+.+. ..+.|...++........+... -....+|++. +++++++-...+.|...+
T Consensus 552 lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSAN 629 (791)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEe
Confidence 11 1123578899997766665554 4568999998554443344332 2334566663 457777777778888888
Q ss_pred CCCCceEEEEE
Q 048801 617 IWEGTPIRIYE 627 (1715)
Q Consensus 617 l~tgk~l~tl~ 627 (1715)
..+|+.+..+.
T Consensus 630 k~tG~~~~~l~ 640 (791)
T 3m0c_C 630 RLTGSDVNLLA 640 (791)
T ss_dssp TTTCCCCEEEE
T ss_pred CCCCcceEEee
Confidence 88887766664
No 341
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.63 E-value=1.5 Score=53.48 Aligned_cols=274 Identities=12% Similarity=0.091 Sum_probs=157.7
Q ss_pred CCCcEEEEeCCCCcEEEEe-cCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCc
Q 048801 263 DDRLVKIWSMETAFCLASC-RGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSA 341 (1715)
Q Consensus 263 ~DGtIrIWDl~tgk~l~tL-~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~ 341 (1715)
.+..|.|-|+..+..+..- -.-. +.-.+|..+.||.-. ..++.|+|+++...+..+.-. ..|.--.|-.+.
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~~-- 117 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-- 117 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECCCS----EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEETT--
T ss_pred CCCeEEEEECCCCCcceecccccc----eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCCC--
Confidence 3447889999876544221 1112 344688888777765 679999999999888887744 456666666554
Q ss_pred ceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec-----
Q 048801 342 IYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS----- 416 (1715)
Q Consensus 342 ~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs----- 416 (1715)
.|+..+ +..|+-|++.... .+...+... ....+.+|..-..+++.++++..+
T Consensus 118 --~l~lVT-~taVyHWsi~~~s-~P~kvFdR~-------------------~~L~~~QIInY~~d~~~kW~~l~GI~~~~ 174 (494)
T 1bpo_A 118 --TVALVT-DNAVYHWSMEGES-QPVKMFDRH-------------------SSLAGCQIINYRTDAKQKWLLLTGISAQQ 174 (494)
T ss_dssp --EEEEEC-SSEEEEEESSSSC-CCEEEEECC-------------------GGGTTCEEEEEEECTTSSEEEEEEEEEET
T ss_pred --eEEEEc-CCeeEEecccCCC-Cchhheecc-------------------hhcccceEEEEEECCCCCeEEEEeecccC
Confidence 333333 4569999986522 111111110 011246788888899999887544
Q ss_pred --CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcC
Q 048801 417 --SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR 494 (1715)
Q Consensus 417 --~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~ 494 (1715)
-.|.+.+|..... ....+.||......+.+..+.. ....++.+..
T Consensus 175 ~~v~G~mQLYS~er~----------~sQ~ieGhaa~F~~~~~~g~~~-----------------------~~~lf~fa~r 221 (494)
T 1bpo_A 175 NRVVGAMQLYSVDRK----------VSQPIEGHAASFAQFKMEGNAE-----------------------ESTLFCFAVR 221 (494)
T ss_dssp TEEEEEEEEEESTTC----------CEEEECCSEEEEEEEECTTCSS-----------------------EEEEEEEEEC
T ss_pred CcccceEEEeecccc----------ccchheeeeeeeEEEecCCCCC-----------------------CceEEEEEEe
Confidence 2478899998753 3466788866554444433210 0123333333
Q ss_pred ---CCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEE
Q 048801 495 ---DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICV 571 (1715)
Q Consensus 495 ---DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~I 571 (1715)
.+.+.|.++..... +...-..+...+..++ .....-..++..|+....++.-+.-|.|++
T Consensus 222 ~~~g~kLhi~Ei~~~~~-~~~~f~kk~vdv~fpp----------------e~~~DFPvamqvs~kygviyviTK~G~i~l 284 (494)
T 1bpo_A 222 GQAGGKLHIIEVGTPPT-GNQPFPKKAVDVFFPP----------------EAQNDFPVAMQISEKHDVVFLITKYGYIHL 284 (494)
T ss_dssp STTCCEEEEEECSCCCT-TCCCCCCEEEECCCCT----------------TSTTCCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred cCCCcEEEEEEcCCCcc-CCCCccceeeeeeCCc----------------ccccCceeEEEecccCCEEEEEecCceEEE
Confidence 27888888754200 0000000011111100 011223456788888889999999999999
Q ss_pred EECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 572 WNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 572 WDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
||+.+|.++..-+-....|..-+.+...+.++ .....|.|.--.+.
T Consensus 285 yDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~-~Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 285 YDLETGTCIYMNRISGETIFVTAPHEATAGII-GVNRKGQVLSVCVE 330 (494)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEEETTTTEEE-EEETTCEEEEEEEC
T ss_pred EecccceeeeeecccCCceEEecccCCCCcEE-EEccCceEEEEEEc
Confidence 99999999887776666665544444222222 23345544444443
No 342
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.58 E-value=2.3 Score=55.93 Aligned_cols=330 Identities=11% Similarity=0.032 Sum_probs=175.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe
Q 048801 245 AVYCAIFDRSGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR 324 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~ 324 (1715)
.|.++....++..|..|+. +-|..++..+++......-....|.++....+|.+.+. +.+ -+.+++..++.......
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~~~~~~~~~ 268 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TDN-GLYVYHNDTTPLQHIIH 268 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ETT-EEEEECCTTSCCEEECC
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eCC-ceeEEecCCCcEEEEEc
Confidence 4889988887776555554 45778888776543221112346888988888876554 444 57788876655432211
Q ss_pred C-------CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCC
Q 048801 325 G-------HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQS 397 (1715)
Q Consensus 325 g-------H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~ 397 (1715)
. ....|.++....++. |..|+..| |.++.. .... ..+..... ......
T Consensus 269 ~~~~~~~l~~~~i~~i~~D~~g~----lWiGT~~G-l~~~~~-~~~~-~~~~~~~~------------------~~~~~~ 323 (758)
T 3ott_A 269 DSRNIQSLTNNIIWNIFADQEHN----IWLGTDYG-ISLSRY-NSAL-QFIPISQI------------------TGTGDG 323 (758)
T ss_dssp CTTCTTSCSCSCEEEEEECTTCC----EEEEESSS-EEEECC-CC-C-EEEEHHHH------------------SCSCCC
T ss_pred CCCCcCcCCcCeEEEEEEcCCCC----EEEEeCCc-cccccc-CCce-eEEecccC------------------CCCCCC
Confidence 0 124588888877764 55555556 544432 1111 11100000 000113
Q ss_pred cceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeee----ecCCCCCeeEEEEccCcccccccccccccc
Q 048801 398 HQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDV----LSGHENDVNYVQFSGCAVASRSAMSDAFKE 473 (1715)
Q Consensus 398 ~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~----l~gH~~~V~sLafspdg~as~~~~~~~~~~ 473 (1715)
..|.++....+|.+.+ |+.+| +..++..++... ....... ..-....|.++.-..++
T Consensus 324 ~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~v~~i~~d~~g------------- 384 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERH----DAIWYRMGDKTYPLSHNRIRHIYEDKEQ------------- 384 (758)
T ss_dssp CBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCC----CCEEECTTCSSSCCSCSCEEEEEECTTS-------------
T ss_pred ceEEEEEEcCCCCEEE-eeCCc-ceeecccccccc----eeEEeccCCcCCCCCCCceEEEEECCCC-------------
Confidence 4588888888887555 44555 556665432110 0000000 00112356666655543
Q ss_pred cccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEe
Q 048801 474 ENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVW 553 (1715)
Q Consensus 474 ~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vtslaf 553 (1715)
.|..|+ ++-|.+|+..+++... +..... .. ......|.++..
T Consensus 385 --------------~lWigt-~~GL~~~~~~~~~~~~--------~~~~~~----------~~-----~~~~~~v~~i~~ 426 (758)
T 3ott_A 385 --------------QLWIAT-DGSINRYDYATRQFIH--------YNIVDN----------TG-----TYNTNWTYYIFE 426 (758)
T ss_dssp --------------CEEEEE-TTEEEEEETTTTEEEE--------EEEECC----------C-------CBSSSEEEEEE
T ss_pred --------------CEEEEe-CCcHhhcCcCCCcEEE--------eecCCC----------cC-----CCCCceEEEEEE
Confidence 455555 4578888887643110 000000 00 001235788888
Q ss_pred CCCCCEEEEEecCCeEEEEECCC-----CceE---EEEec----CCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCc
Q 048801 554 SLDNRFVLAAIMDCRICVWNAVD-----GSLV---HSLTG----HSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGT 621 (1715)
Q Consensus 554 SPDG~~LaTgs~DGtI~IWDl~s-----g~~l---~tL~g----H~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk 621 (1715)
..+|.+. .|+..+-|.+++..+ +... ..+.. ....|.++...+ ++.+.+.++..+-|..+|..+++
T Consensus 427 d~~g~lW-igT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~ 504 (758)
T 3ott_A 427 DTAGQLW-ISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDKINPRTRE 504 (758)
T ss_dssp CTTSEEE-EEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEEEETTTTE
T ss_pred cCCCCEE-EEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCc
Confidence 8777644 466666688888542 1111 12211 123588888877 55666533444558889987765
Q ss_pred eEEEEEc---ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 048801 622 PIRIYEI---GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGE 663 (1715)
Q Consensus 622 ~l~tl~~---h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe 663 (1715)
....... ....+.++....+|.+.+.+ . +.|..|+..+++
T Consensus 505 ~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~ 547 (758)
T 3ott_A 505 VTKLFADELTGEKSPNYLLCDEDGLLWVGF-H-GGVMRINPKDES 547 (758)
T ss_dssp EEEECTTTSCGGGCEEEEEECTTSCEEEEE-T-TEEEEECC--CC
T ss_pred eEEecCCCcCCCcccceEEECCCCCEEEEe-c-CceEEEecCCCc
Confidence 4432111 12457788888888876654 4 458888876654
No 343
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.56 E-value=0.49 Score=56.54 Aligned_cols=60 Identities=12% Similarity=0.042 Sum_probs=37.6
Q ss_pred CeEEEEEccCCCcEEEEEeCCCcEEEEECCCCce------EEEEEcccceEEEEEEcCCCCEEEEEeC
Q 048801 589 SSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTP------IRIYEIGRFKLVDGKFSPDGTSIVLSDD 650 (1715)
Q Consensus 589 ~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~------l~tl~~h~~~V~svafSPDG~~LAsgs~ 650 (1715)
....++|. ++.++++.-..+.|...++..... ...+......+.++++.|||.++++...
T Consensus 269 ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 269 PPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTSN 334 (352)
T ss_dssp CEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEECS
T ss_pred CCcceEEE--CCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEeC
Confidence 45677773 566776666667787777654321 1222223456889999999977766543
No 344
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.41 E-value=0.01 Score=77.94 Aligned_cols=115 Identities=11% Similarity=-0.068 Sum_probs=70.3
Q ss_pred eeEEEeCCCCCEEEEEec-C-CeEEEEECCCCceEEEE-ecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEE
Q 048801 548 VNMIVWSLDNRFVLAAIM-D-CRICVWNAVDGSLVHSL-TGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIR 624 (1715)
Q Consensus 548 VtslafSPDG~~LaTgs~-D-GtI~IWDl~sg~~l~tL-~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~ 624 (1715)
...|+++|.+.+|+.+.. . +.|.++++.. .....+ ...-...+.|+|+|++++++++-...+.|.++++.. ....
T Consensus 498 P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG-~~~~ 575 (699)
T 1n7d_A 498 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRK 575 (699)
T ss_dssp CCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS-SCCE
T ss_pred cceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC-CceE
Confidence 466889987665555443 2 6788777643 333333 222334578999997788888877888999999854 3333
Q ss_pred EEEcc---cceEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCcccc
Q 048801 625 IYEIG---RFKLVDGKFSPDGTSIVLS-DDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 625 tl~~h---~~~V~svafSPDG~~LAsg-s~DG~I~IWdl~tGe~~k 666 (1715)
.+... ......|++..+ .|+.+ ...+.|..++..+|+...
T Consensus 576 ~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 576 TILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp EECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEE
T ss_pred EEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceE
Confidence 33211 122334555443 44444 456789999987776544
No 345
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.40 E-value=0.13 Score=60.88 Aligned_cols=159 Identities=12% Similarity=0.129 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCcEEEE-ecC----CCC--CeEEEEE---CCCCCEEEEEeC---------
Q 048801 246 VYCAIFDRSGRFVITGS-DDRLVKIWSMETAFCLAS-CRG----HEG--DITDLAV---SSNNTLVASASN--------- 305 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS-~DGtIrIWDl~tgk~l~t-L~g----Hs~--~VtsLaf---SpDg~lLASGS~--------- 305 (1715)
--+++|++....|..++ ..|+|..|+...+..... +.+ ... .+..|.| .++++++++...
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 34678987555666665 789999999986654433 222 111 3579999 688888876442
Q ss_pred ----CCeeEEEECC---CCCceEEEe--CC-----------CCCeEEEEecCCCCcceEEEEecCC-CcEEEEecCCCCC
Q 048801 306 ----DFVIRVWRLP---DGLPISVLR--GH-----------TGAVTAIAFSPRPSAIYQLLSSSDD-GTCRIWDARYSQY 364 (1715)
Q Consensus 306 ----DGtIrVWDl~---tg~~l~~L~--gH-----------~~~VtsLafSPdg~~~~~LaSgS~D-GtVrIWDl~tg~~ 364 (1715)
+..|..+|+. +++.+.... .. ...+..++..++|+ ..++++.- +.|...+.... .
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn---aYVt~s~~~~~I~rV~pdG~-~ 170 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN---SYVAFALGMPAIARVSADGK-T 170 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC---EEEEEEESSCEEEEECTTSC-C
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC---EEEeCCCCCCeEEEEeCCCC-E
Confidence 5779999999 888776554 11 13488999999987 56666666 77666665433 2
Q ss_pred cceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCC
Q 048801 365 SPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSAC 427 (1715)
Q Consensus 365 l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~ 427 (1715)
+..+....+ ........+.|+++|+|..|++....|.|..+|+.
T Consensus 171 ~~~~~~~~~-------------------~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 171 VSTFAWESG-------------------NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEEEECCC-------------------CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred EeeeeecCC-------------------CcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 222211110 01112346789999999988888779999999986
No 346
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.33 E-value=0.013 Score=77.07 Aligned_cols=229 Identities=10% Similarity=-0.058 Sum_probs=119.4
Q ss_pred CCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCC---CcceecCCCCCCCccCccC
Q 048801 306 DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQ---YSPRIYLPKPPDAITGKSN 382 (1715)
Q Consensus 306 DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~---~l~~i~~~~~~~~i~g~~~ 382 (1715)
.+.|++.++.+......+. ....+.+|+|.+.... ++++-...+.|+.+++.... ....+
T Consensus 385 ~~~I~~id~~~~~~~~~~~-~~~~p~gla~d~~~~~--Ly~sD~~~~~I~~~~~~g~~~~~~~~~~-------------- 447 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNR--IYWSDLSQRMICSTQLDRAHGVSSYDTV-------------- 447 (699)
T ss_dssp TTC-CEECTTSCCEECCSC-CCTTCCCCEEETTTTE--EEECCTTTTSBEEEESCCCCC-CCCCCB--------------
T ss_pred ccceEEEeCCCCcceeeec-cCcceEEEccccccCe--EEEEecCCCeEEEEecCCCCCCcceEEE--------------
Confidence 3577788877655443333 2345678899886652 34444556788888876411 00000
Q ss_pred CCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcc
Q 048801 383 VPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAV 461 (1715)
Q Consensus 383 ~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~ 461 (1715)
..........|++.+ .+.++++-...+.|.++++..... ...+.........|++.|.+
T Consensus 448 ----------i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~---------~~l~~~~~~~P~giavDp~~- 507 (699)
T 1n7d_A 448 ----------ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR---------KTLFREQGSKPRAIVVDPVH- 507 (699)
T ss_dssp ----------CCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCE---------EEECCCSSCCCCCEECCSSS-
T ss_pred ----------EeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCce---------EEEEeCCCCCcceEEEccCC-
Confidence 000012245678875 455666656678899998864311 11111112234556666543
Q ss_pred cccccccccccccccccccCCcccCceEEEEcC-CCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCCCCccc
Q 048801 462 ASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSR-DGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQR 540 (1715)
Q Consensus 462 as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~-DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 540 (1715)
+.++++-.. .+.|.++++.... ...
T Consensus 508 ------------------------g~ly~td~~~~~~I~~~~~dG~~------------------------------~~~ 533 (699)
T 1n7d_A 508 ------------------------GFMYWTDWGTPAKIKKGGLNGVD------------------------------IYS 533 (699)
T ss_dssp ------------------------SCCEECCCSSSCCEEBCCSSSCC------------------------------CCE
T ss_pred ------------------------CcEEEcccCCCCeEEEEeCCCCC------------------------------eeE
Confidence 122333222 2455555443211 000
Q ss_pred cc-CCCCCeeEEEeCCCCCEEE-EEecCCeEEEEECCCCceEEEEec--CCCCeEEEEEccCCCcEEEEEeCCCcEEEEE
Q 048801 541 LL-PTPRGVNMIVWSLDNRFVL-AAIMDCRICVWNAVDGSLVHSLTG--HSASSYVLDVHPFNPRIAMSAGYDGRTIVWD 616 (1715)
Q Consensus 541 l~-~h~~~VtslafSPDG~~La-Tgs~DGtI~IWDl~sg~~l~tL~g--H~~~V~sLafSP~dg~lLaSgs~DGtI~VWD 616 (1715)
+. ......+.|+|+|++..|+ +-+..+.|.++++........+.. ......+|++.. ..++++....+.|..++
T Consensus 534 l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~--~~lywtd~~~~~V~~~d 611 (699)
T 1n7d_A 534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSAN 611 (699)
T ss_dssp ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET--TEEEEECSTTTCEEEEE
T ss_pred EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEEC--CEEEEEeCCCCeEEEEE
Confidence 00 1122356789998765554 444567899999864332222221 122234555543 46666766778888888
Q ss_pred CCCCceEEEEE
Q 048801 617 IWEGTPIRIYE 627 (1715)
Q Consensus 617 l~tgk~l~tl~ 627 (1715)
..+|+.+..+.
T Consensus 612 ~~~G~~~~~i~ 622 (699)
T 1n7d_A 612 RLTGSDVNLLA 622 (699)
T ss_dssp TTTEEEEECCC
T ss_pred ccCCCceEEee
Confidence 87777666554
No 347
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.32 E-value=0.78 Score=57.36 Aligned_cols=274 Identities=10% Similarity=0.013 Sum_probs=141.9
Q ss_pred CeEEEEECC-CC-CEEEEEeCCCeeEEEECCCCCceEEEeCC---CCCeEEEEe-------cCCCCcceEEEEecCCC-c
Q 048801 287 DITDLAVSS-NN-TLVASASNDFVIRVWRLPDGLPISVLRGH---TGAVTAIAF-------SPRPSAIYQLLSSSDDG-T 353 (1715)
Q Consensus 287 ~VtsLafSp-Dg-~lLASGS~DGtIrVWDl~tg~~l~~L~gH---~~~VtsLaf-------SPdg~~~~~LaSgS~DG-t 353 (1715)
....|+|+| ++ +++++....+.|++.|+.++.....+... ......|+| ++++. .|+++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~---~lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAE---YMIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTC---EEEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCC---EEEEEeCCCCC
Confidence 467899998 34 44444444567888998877655444322 235799999 99987 455554443 2
Q ss_pred ------EEEEecCC-CCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEcc-CCCeEEEecCCCeEEEEe
Q 048801 354 ------CRIWDARY-SQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNA-NGTVFVTGSSDTFARVWS 425 (1715)
Q Consensus 354 ------VrIWDl~t-g~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSp-dG~~LatGs~DG~IrVWD 425 (1715)
|.+++... +...... . +. .. ........++++| ++.++++-..++.|..+|
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~-----~----~~-----------~v-~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d 275 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRS-----D----IQ-----------LI-AAYKQCNGATIHPINGELYFNSYEKGQVFRLD 275 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTS-----C----EE-----------EE-EEESCCCCEEECTTTCCEEEEETTTTEEEEEC
T ss_pred cccCceEEEEecCCCCceeecc-----c----ce-----------ee-ccCCCceEEEEcCCCCeEEEEECCCCEEEEEe
Confidence 44554322 1211000 0 00 00 0012345778899 566677777888999999
Q ss_pred CC-------CCCccCCCCC-----ceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCc-eEEEE
Q 048801 426 AC-------KSSVEDSEQP-----IHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHD-NIVTC 492 (1715)
Q Consensus 426 l~-------t~~~~~~~~~-----~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~-~LaSg 492 (1715)
+. ++.......+ ...+..+ +.......|+|+|++ + ++++-
T Consensus 276 ~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G--------------------------~~lYvaD 328 (496)
T 3kya_A 276 LVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTG--------------------------KYAYFGV 328 (496)
T ss_dssp HHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTS--------------------------SEEEEEE
T ss_pred cccccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCC--------------------------CEEEEEe
Confidence 87 4432000000 1112111 223345789999987 4 46666
Q ss_pred cCCCeEEEEecCCCcc-CcccccccccccccCCCCCCCCCCCCCCCcccccCCCCCee-EEEeC-------CCCCEEEEE
Q 048801 493 SRDGSAIIWIPRSRRS-HGKVGRWTRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVN-MIVWS-------LDNRFVLAA 563 (1715)
Q Consensus 493 S~DGsIrIWDl~t~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~Vt-slafS-------PDG~~LaTg 563 (1715)
+....|+.++...... +.....+.... ..... ..+... ...-.... .++.. .+|.++++-
T Consensus 329 ~~~h~I~kid~dg~~~~~~~~~~~aG~~----g~~G~----~DG~~~---~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD 397 (496)
T 3kya_A 329 INNHYFMRSDYDEIKKEFITPYNFVGGY----KQSGY----RDDVGT---EARMNNPCQGVFVKNPDYTGEEEYDFYFVD 397 (496)
T ss_dssp TTTTEEEEEEEETTTTEECCCEEEEEBT----TBCCC----BCCBGG---GCBCSSEEEEEEEECTTCCSSCCEEEEEEE
T ss_pred CCCCEEEEEecCCCcceecccEEecCCC----CCCcc----cCCccc---ccccCCCeEEEEEccccccccCCCeEEEEE
Confidence 6778888866542110 00000000000 00000 001000 01111233 44554 567777777
Q ss_pred ecCCeEEEEECCCCceEEEEecCC------------------------CCeEEEEEccCCCcEEEEEeCCCcEEEEECCC
Q 048801 564 IMDCRICVWNAVDGSLVHSLTGHS------------------------ASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 564 s~DGtI~IWDl~sg~~l~tL~gH~------------------------~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t 619 (1715)
..+++|+.++ .+|. +.++.+.. .....|++.+.++.++++=....+|+.+++..
T Consensus 398 ~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 398 RLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp GGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred CCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence 7788999998 4664 44554321 12467777774366666666667777777765
Q ss_pred CceEE
Q 048801 620 GTPIR 624 (1715)
Q Consensus 620 gk~l~ 624 (1715)
..+++
T Consensus 476 ~~~~~ 480 (496)
T 3kya_A 476 EENVA 480 (496)
T ss_dssp CC---
T ss_pred Ccccc
Confidence 54443
No 348
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.15 E-value=0.36 Score=57.53 Aligned_cols=194 Identities=11% Similarity=0.142 Sum_probs=117.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCC----CC---EEEEEe-C--CCeeEEEECC-CCCceEE
Q 048801 254 SGRFVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSN----NT---LVASAS-N--DFVIRVWRLP-DGLPISV 322 (1715)
Q Consensus 254 DG~~LaTGS~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpD----g~---lLASGS-~--DGtIrVWDl~-tg~~l~~ 322 (1715)
...+++.....+-+.+||+ +|+.++.+.. +.++.+.+-|+ |+ ++++.. . +++|.||++. ....+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 4456666667788999999 8999999874 56777776653 22 233333 3 5789999774 2223555
Q ss_pred EeC------CC-CCeEEEEe--cCCCCcceEEEEecCCCcEEEEecCC---C----CCcceecCCCCCCCccCccCCCCC
Q 048801 323 LRG------HT-GAVTAIAF--SPRPSAIYQLLSSSDDGTCRIWDARY---S----QYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 323 L~g------H~-~~VtsLaf--SPdg~~~~~LaSgS~DGtVrIWDl~t---g----~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
+.. .. ..+..+|+ +|.... .++++...+|.+..|++.. + +.+.++.+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~-~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---------------- 178 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGK-YYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---------------- 178 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCC-EEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC----------------
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCc-EEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC----------------
Confidence 521 11 55677887 665432 2677788889999998842 2 22233222
Q ss_pred CCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeec-C-CCCCeeEEEEccCccccc
Q 048801 387 NGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLS-G-HENDVNYVQFSGCAVASR 464 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~-g-H~~~V~sLafspdg~as~ 464 (1715)
..++-.|++.+....|.++-++..|..|+..... ......+..+. + -...+..|++.+...
T Consensus 179 ----------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~----~~~~~~v~~~~~g~l~aDvEGLai~~~~~--- 241 (355)
T 3amr_A 179 ----------NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDG----GSNGTVIDRADGRHLTRDIEGLTIYYAAD--- 241 (355)
T ss_dssp ----------SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTS----CSCCEEEEEBSSSSBCSCEEEEEEEECGG---
T ss_pred ----------CCCcceEEEcCCCCeEEEecccceEEEEeCCcCC----CCCceEEEEecCCccccCcceEEEEecCC---
Confidence 2357788888888888888888666666654211 01112232221 2 223677777743210
Q ss_pred ccccccccccccccccCCcccC-ceEEEEcCCCeEEEEecC
Q 048801 465 SAMSDAFKEENVPKFKNSWFCH-DNIVTCSRDGSAIIWIPR 504 (1715)
Q Consensus 465 ~~~~~~~~~~~~~~~~~s~~~~-~~LaSgS~DGsIrIWDl~ 504 (1715)
.. -.|+++-.+.++.+||..
T Consensus 242 --------------------g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 242 --------------------GKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp --------------------GCEEEEEEEGGGTEEEEEESS
T ss_pred --------------------CCEEEEEEcCCCCEEEEEECC
Confidence 01 245555578899999986
No 349
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.13 E-value=2.1 Score=51.15 Aligned_cols=81 Identities=16% Similarity=0.106 Sum_probs=50.5
Q ss_pred EecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceE--EE----eCCCCCeEEEEecCC---CCcceEE-EEec
Q 048801 280 SCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS--VL----RGHTGAVTAIAFSPR---PSAIYQL-LSSS 349 (1715)
Q Consensus 280 tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~--~L----~gH~~~VtsLafSPd---g~~~~~L-aSgS 349 (1715)
.+...-...+.|+|.|||.++++--..|.|++++..++.... .+ ....+....|+|+|+ +..+ |+ .+..
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~l-Yv~yt~~ 104 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMV-YAYFTSA 104 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEE-EEEEECS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEE-EEEEecC
Confidence 344445567899999999988777658999999866665322 12 123456899999996 3322 22 2223
Q ss_pred CCCcEEEEecCC
Q 048801 350 DDGTCRIWDARY 361 (1715)
Q Consensus 350 ~DGtVrIWDl~t 361 (1715)
.++.|.-|.+..
T Consensus 105 ~~~~v~R~~~~~ 116 (347)
T 3das_A 105 SDNRIVRMLYDE 116 (347)
T ss_dssp SSEEEEEEEBCT
T ss_pred CCCEEEEEEeCC
Confidence 445555565543
No 350
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.05 E-value=1 Score=53.79 Aligned_cols=73 Identities=14% Similarity=0.065 Sum_probs=45.3
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCce--EEEe---CCCCCeEEEEecCC---CCcceEEEEecCC-----
Q 048801 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPI--SVLR---GHTGAVTAIAFSPR---PSAIYQLLSSSDD----- 351 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l--~~L~---gH~~~VtsLafSPd---g~~~~~LaSgS~D----- 351 (1715)
-.....|+|.|+|+++++ ..+|.|.+++ ++... ..+. ........|+|+|+ +.. +.++-...
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~--lYv~~~~~~~~~~ 104 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPY--VYAYRTVAEGGLR 104 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCE--EEEEEEECTTSSE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCE--EEEEEecCCCCCc
Confidence 345679999999986555 5669999998 44321 1111 12356899999998 442 22332222
Q ss_pred CcEEEEecCCC
Q 048801 352 GTCRIWDARYS 362 (1715)
Q Consensus 352 GtVrIWDl~tg 362 (1715)
+.|..|+...+
T Consensus 105 ~~v~r~~~~~~ 115 (352)
T 2ism_A 105 NQVVRLRHLGE 115 (352)
T ss_dssp EEEEEEEECSS
T ss_pred cEEEEEEeCCC
Confidence 56777776643
No 351
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=95.97 E-value=0.26 Score=58.31 Aligned_cols=112 Identities=6% Similarity=0.022 Sum_probs=81.0
Q ss_pred eeEEEe---CCCCCEEEEEec-------------CCeEEEEECC---CCceEEEEe--c-----------CCCCeEEEEE
Q 048801 548 VNMIVW---SLDNRFVLAAIM-------------DCRICVWNAV---DGSLVHSLT--G-----------HSASSYVLDV 595 (1715)
Q Consensus 548 Vtslaf---SPDG~~LaTgs~-------------DGtI~IWDl~---sg~~l~tL~--g-----------H~~~V~sLaf 595 (1715)
+..|.| .|+++++++... +..|..||+. +++.+.... + -......++.
T Consensus 65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav 144 (334)
T 2p9w_A 65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ 144 (334)
T ss_dssp EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence 578999 688888876442 6779999999 888776554 1 1134789999
Q ss_pred ccCCCcEEEEEeCC-CcEEEEECCCCceEEEEEccc------ceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 596 HPFNPRIAMSAGYD-GRTIVWDIWEGTPIRIYEIGR------FKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 596 SP~dg~lLaSgs~D-GtI~VWDl~tgk~l~tl~~h~------~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
.+ +++..++++.. +.|...+.. |+.+..+.... .....++++|||..|++....|.|..+|+.+
T Consensus 145 D~-~GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 145 DR-DGNSYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CT-TSCEEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CC-CCCEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 99 66777778777 887777753 44444432111 1255889999999999987799999999873
No 352
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=95.73 E-value=1.1 Score=53.47 Aligned_cols=113 Identities=11% Similarity=0.055 Sum_probs=74.3
Q ss_pred CCeeEEEe--CCC-CC-EEEEEecCCeEEEEECC-------CCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEE
Q 048801 546 RGVNMIVW--SLD-NR-FVLAAIMDCRICVWNAV-------DGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIV 614 (1715)
Q Consensus 546 ~~Vtslaf--SPD-G~-~LaTgs~DGtI~IWDl~-------sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~V 614 (1715)
..+..+|+ ++. +. ++++...+|.+..|++. +++++++|... +.+-.+...+ ....|+.+-.+.-|..
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd-~~g~Lyv~eEd~GIw~ 205 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADD-EYGRLYIAEEDEAIWK 205 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEET-TTTEEEEEETTTEEEE
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcC-CCCeEEEecccceEEE
Confidence 34556677 774 44 67888889999999882 34566777643 4577888877 4455666777766666
Q ss_pred EECC-----CCceEEEEEcc--cceEEEEEE--cCCCC-EEEEEe-CCCeEEEEECC
Q 048801 615 WDIW-----EGTPIRIYEIG--RFKLVDGKF--SPDGT-SIVLSD-DVGQIYLLNTG 660 (1715)
Q Consensus 615 WDl~-----tgk~l~tl~~h--~~~V~svaf--SPDG~-~LAsgs-~DG~I~IWdl~ 660 (1715)
++.. +++.+..+... ...+-.|++ .++|+ +|++++ .+..+.||+..
T Consensus 206 ~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 206 FSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 6644 34566554321 135677777 66766 666655 67799999985
No 353
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.71 E-value=3.5 Score=49.08 Aligned_cols=69 Identities=17% Similarity=0.167 Sum_probs=44.8
Q ss_pred CCeEEEEEcc------CCCcEEEEEeCCCcEEEEECCCCceEEEEE---cccceEEEEEEcCCCCEEEEEe-CCCeEEE
Q 048801 588 ASSYVLDVHP------FNPRIAMSAGYDGRTIVWDIWEGTPIRIYE---IGRFKLVDGKFSPDGTSIVLSD-DVGQIYL 656 (1715)
Q Consensus 588 ~~V~sLafSP------~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~---~h~~~V~svafSPDG~~LAsgs-~DG~I~I 656 (1715)
.....++|.. ..+.++++.-..+.|...++..++.+.... .....+..+++.|||.++++.+ .+|.|+-
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I~r 349 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELLK 349 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEEEE
Confidence 3567788864 136777776677888888887665443322 1234688999999999777654 4565543
No 354
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.68 E-value=3.3 Score=49.41 Aligned_cols=62 Identities=6% Similarity=-0.074 Sum_probs=40.2
Q ss_pred CCeEEEEEcc------CCCcEEEEEeCCCcEEEEECCCC-ceE--EEEEc-ccceEEEEEEcCCCCEEEEEe
Q 048801 588 ASSYVLDVHP------FNPRIAMSAGYDGRTIVWDIWEG-TPI--RIYEI-GRFKLVDGKFSPDGTSIVLSD 649 (1715)
Q Consensus 588 ~~V~sLafSP------~dg~lLaSgs~DGtI~VWDl~tg-k~l--~tl~~-h~~~V~svafSPDG~~LAsgs 649 (1715)
.....++|.. .++.++++.-..+.|...++... +.. ..+.. ....+.++++.|||.+.++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 3467888831 25677777667778888888753 332 22321 235688999999997666654
No 355
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.64 E-value=4.9 Score=47.83 Aligned_cols=60 Identities=10% Similarity=0.074 Sum_probs=39.1
Q ss_pred CCeeEEEeC-------CCCCEEEEEecCCeEEEEECCCC-ceE--EEE-ecCCCCeEEEEEccCCCcEEEEE
Q 048801 546 RGVNMIVWS-------LDNRFVLAAIMDCRICVWNAVDG-SLV--HSL-TGHSASSYVLDVHPFNPRIAMSA 606 (1715)
Q Consensus 546 ~~VtslafS-------PDG~~LaTgs~DGtI~IWDl~sg-~~l--~tL-~gH~~~V~sLafSP~dg~lLaSg 606 (1715)
.....++|. .+|.++++....+.|...++... ... ..+ .+-...+..|++.| ++.++++.
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~p-DG~lyv~~ 329 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDD-DGGILIST 329 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECT-TSCEEEEE
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECC-CCcEEEEE
Confidence 457778883 57777777777788888888753 332 233 23345688899988 45655554
No 356
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.54 E-value=0.56 Score=53.95 Aligned_cols=103 Identities=11% Similarity=0.084 Sum_probs=58.7
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCceEEE--EecCCCCeEEEEEccCCCcEEEEEeCC-----CcEEEEECCCCceE
Q 048801 556 DNRFVLAAIMD-----CRICVWNAVDGSLVHS--LTGHSASSYVLDVHPFNPRIAMSAGYD-----GRTIVWDIWEGTPI 623 (1715)
Q Consensus 556 DG~~LaTgs~D-----GtI~IWDl~sg~~l~t--L~gH~~~V~sLafSP~dg~lLaSgs~D-----GtI~VWDl~tgk~l 623 (1715)
++.+++.|+.+ ..+.+||+.+.+-... +........++.+ ++.+++.||.+ ..|.+||+.+.+-.
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence 67777877755 3588999887654332 1111111222332 56788888765 46899999877544
Q ss_pred EEEEc--ccceEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCc
Q 048801 624 RIYEI--GRFKLVDGKFSPDGTSIVLSDDV-----GQIYLLNTGQGE 663 (1715)
Q Consensus 624 ~tl~~--h~~~V~svafSPDG~~LAsgs~D-----G~I~IWdl~tGe 663 (1715)
..-.. .......+. -++++++.|+.+ ..|.+||+.+.+
T Consensus 236 ~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 236 TVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred ECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 32211 111112222 267777777655 357778876654
No 357
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.50 E-value=0.29 Score=59.63 Aligned_cols=156 Identities=16% Similarity=0.184 Sum_probs=102.1
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCcEEEEecCC----CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCC---------
Q 048801 252 DRSGRFVITGSDDRLVKIWSMETAFCLASCRGH----EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGL--------- 318 (1715)
Q Consensus 252 SpDG~~LaTGS~DGtIrIWDl~tgk~l~tL~gH----s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~--------- 318 (1715)
..+|.-|+.+- ++.||.-++......+.+.-. -..|..+..+|+|++||..+. ..|.|-.+..+.
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence 44666666664 478888888755445555432 236888999999999998865 489998887432
Q ss_pred ---ceEEEeC------CCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCC
Q 048801 319 ---PISVLRG------HTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGP 389 (1715)
Q Consensus 319 ---~l~~L~g------H~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~ 389 (1715)
..+.+.- ...+|..+.|+|-+.....|++-..|++|++||+......+. .+.+.....
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~f------------ 173 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSF------------ 173 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEE------------
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcccccc------------
Confidence 1122321 246799999999876555899999999999999987443333 221111000
Q ss_pred CCCCCCCCcceeEEEEccCCCeEEE--ecCCCeEEEE
Q 048801 390 SSSNGLQSHQILCCAYNANGTVFVT--GSSDTFARVW 424 (1715)
Q Consensus 390 ~~~~~~h~~~VtslafSpdG~~Lat--Gs~DG~IrVW 424 (1715)
........|.+++|..+|-.|.+ .+..|.|+-.
T Consensus 174 --g~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 174 --GLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp --ESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred --CCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 11122366899999998866665 4466776544
No 358
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.37 E-value=0.54 Score=54.14 Aligned_cols=105 Identities=15% Similarity=0.154 Sum_probs=56.2
Q ss_pred CCCEEEEEecC-------CeEEEEECCCCceEEE--EecCCCCeEEEEEccCCCcEEEEEeCCC-----cEEEEECCCCc
Q 048801 556 DNRFVLAAIMD-------CRICVWNAVDGSLVHS--LTGHSASSYVLDVHPFNPRIAMSAGYDG-----RTIVWDIWEGT 621 (1715)
Q Consensus 556 DG~~LaTgs~D-------GtI~IWDl~sg~~l~t--L~gH~~~V~sLafSP~dg~lLaSgs~DG-----tI~VWDl~tgk 621 (1715)
++.+++.|+.+ ..+.+||+.+.+-... +........++.+ ++.+++.||.++ .+.+||+.+.+
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 66777777643 3588999887654332 1111111222222 568888887653 68899988765
Q ss_pred eEEEEEcccceEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCc
Q 048801 622 PIRIYEIGRFKLVDGKFSPDGTSIVLSDDVG-----QIYLLNTGQGE 663 (1715)
Q Consensus 622 ~l~tl~~h~~~V~svafSPDG~~LAsgs~DG-----~I~IWdl~tGe 663 (1715)
-...-..........+..-++++++.|+.++ .+.+||+.+.+
T Consensus 232 W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 232 WRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 4332111111111111222666777776543 36777776553
No 359
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.35 E-value=0.49 Score=54.43 Aligned_cols=104 Identities=12% Similarity=0.119 Sum_probs=53.1
Q ss_pred CCCEEEEEe-CC-----CcEEEEeCCCCcEEEE--ecCCCCCeEEEEECCCCCEEEEEeCC-----CeeEEEECCCCC--
Q 048801 254 SGRFVITGS-DD-----RLVKIWSMETAFCLAS--CRGHEGDITDLAVSSNNTLVASASND-----FVIRVWRLPDGL-- 318 (1715)
Q Consensus 254 DG~~LaTGS-~D-----GtIrIWDl~tgk~l~t--L~gHs~~VtsLafSpDg~lLASGS~D-----GtIrVWDl~tg~-- 318 (1715)
++.+++.|+ .+ ..+.+||..+.+-... +........++. .++.+++.|+.+ ..+.+||+.+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 344556665 22 3688899877643221 111111122222 357777777754 468899988766
Q ss_pred -ceEE--EeCCCCCeEEEEecCCCCcceEEEEecCC-----CcEEEEecCCCCC
Q 048801 319 -PISV--LRGHTGAVTAIAFSPRPSAIYQLLSSSDD-----GTCRIWDARYSQY 364 (1715)
Q Consensus 319 -~l~~--L~gH~~~VtsLafSPdg~~~~~LaSgS~D-----GtVrIWDl~tg~~ 364 (1715)
-... +........++.+ ++. .++.|+.+ ..+.+||+.+.+.
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~--~~~---lyv~GG~~~~~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL--GDM---IYVSGGFDGSRRHTSMERYDPNIDQW 140 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE--TTE---EEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred eeEECCCCCCCccceeEEEE--CCE---EEEEcccCCCcccceEEEEcCCCCeE
Confidence 3222 1111111122222 333 55556543 3577888876653
No 360
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.29 E-value=3.4 Score=51.06 Aligned_cols=56 Identities=18% Similarity=0.111 Sum_probs=32.8
Q ss_pred CcEEEEEeCCCcEEEEECCC-CceE----EEEEcccceEEEEEEcCCCC-EEEEEeCCCeEE
Q 048801 600 PRIAMSAGYDGRTIVWDIWE-GTPI----RIYEIGRFKLVDGKFSPDGT-SIVLSDDVGQIY 655 (1715)
Q Consensus 600 g~lLaSgs~DGtI~VWDl~t-gk~l----~tl~~h~~~V~svafSPDG~-~LAsgs~DG~I~ 655 (1715)
+.+++..-..+.|....+.. +..+ ..+......+.+|++.|||. ++++.+..|.|+
T Consensus 369 g~lfv~~~~~~~i~~v~l~~~g~~~~~~~~~~~~~~~R~~dv~~gpDG~~Lyv~~d~~G~i~ 430 (454)
T 1cru_A 369 NTLLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFKSNNRYRDVIASPDGNVLYVLTDTAGNVQ 430 (454)
T ss_dssp TEEEEEBSSSCCEEEEEECTTSSSEEEEEEEESCCSSCEEEEEECTTSSCEEEEECSSCCEE
T ss_pred CcEEEeecCCCEEEEEEECCCCCeeeeeeeeecccCCCceeEEECCCCCEEEEEECCCCCCc
Confidence 34555444456666666653 3322 12222345788999999997 666666566544
No 361
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.97 E-value=0.92 Score=52.29 Aligned_cols=103 Identities=12% Similarity=0.028 Sum_probs=57.0
Q ss_pred CCCEEEEEec---------CCeEEEEECCCCceEEEE--ecCCCCeEEEEEccCCCcEEEEEeCC-----CcEEEEECCC
Q 048801 556 DNRFVLAAIM---------DCRICVWNAVDGSLVHSL--TGHSASSYVLDVHPFNPRIAMSAGYD-----GRTIVWDIWE 619 (1715)
Q Consensus 556 DG~~LaTgs~---------DGtI~IWDl~sg~~l~tL--~gH~~~V~sLafSP~dg~lLaSgs~D-----GtI~VWDl~t 619 (1715)
++.+++.|+. -..+.+||+.+.+-...- ........++.+ ++++++.||.+ ..|.+||+.+
T Consensus 149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~ 225 (306)
T 3ii7_A 149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV---KDKIFAVGGQNGLGGLDNVEYYDIKL 225 (306)
T ss_dssp TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTEEBCCEEEEETTT
T ss_pred CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE---CCEEEEEeCCCCCCCCceEEEeeCCC
Confidence 6777777764 345889999877533221 111111122222 56788887754 3588999887
Q ss_pred CceEEE--EEcccceEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCc
Q 048801 620 GTPIRI--YEIGRFKLVDGKFSPDGTSIVLSDDV-----GQIYLLNTGQGE 663 (1715)
Q Consensus 620 gk~l~t--l~~h~~~V~svafSPDG~~LAsgs~D-----G~I~IWdl~tGe 663 (1715)
.+-... +.........+.+ ++.+++.|+.+ ..+.+||+.+.+
T Consensus 226 ~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 226 NEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp TEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 643322 1111112222222 67777777744 467778876654
No 362
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.79 E-value=0.88 Score=52.32 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=37.7
Q ss_pred CCCEEEEEecCC-----eEEEEECCCCceEEEE--ecCCCCeEEEEEccCCCcEEEEEeCCC-----cEEEEECCCCc
Q 048801 556 DNRFVLAAIMDC-----RICVWNAVDGSLVHSL--TGHSASSYVLDVHPFNPRIAMSAGYDG-----RTIVWDIWEGT 621 (1715)
Q Consensus 556 DG~~LaTgs~DG-----tI~IWDl~sg~~l~tL--~gH~~~V~sLafSP~dg~lLaSgs~DG-----tI~VWDl~tgk 621 (1715)
++.+++.|+.++ .|.+||+.+.+-...- .........+.+ ++.+++.||.++ .|.+||+.+.+
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV---NGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE---CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 677888887653 6899999876543321 111111122222 667888887654 47888887654
No 363
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.44 E-value=1.5 Score=50.40 Aligned_cols=102 Identities=8% Similarity=-0.026 Sum_probs=53.3
Q ss_pred CEEEEEeC--CCcEEEEeCCCCcEEE--EecCCCCCeEEEEECCCCCEEEEEeCC----CeeEEEECCCCCceEE--EeC
Q 048801 256 RFVITGSD--DRLVKIWSMETAFCLA--SCRGHEGDITDLAVSSNNTLVASASND----FVIRVWRLPDGLPISV--LRG 325 (1715)
Q Consensus 256 ~~LaTGS~--DGtIrIWDl~tgk~l~--tL~gHs~~VtsLafSpDg~lLASGS~D----GtIrVWDl~tg~~l~~--L~g 325 (1715)
.+++.|+. ...+.+||..+.+-.. .+......-.++.+ ++.+++.|+.+ ..+.+||+.+..-... +..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 34555654 3578889988764322 12111112222222 67777787754 5688899877643222 111
Q ss_pred CCCCeEEEEecCCCCcceEEEEecCC------CcEEEEecCCCCC
Q 048801 326 HTGAVTAIAFSPRPSAIYQLLSSSDD------GTCRIWDARYSQY 364 (1715)
Q Consensus 326 H~~~VtsLafSPdg~~~~~LaSgS~D------GtVrIWDl~tg~~ 364 (1715)
.......+.+ ++. .++.|+.+ ..+.+||+.+...
T Consensus 91 ~r~~~~~~~~--~~~---iyv~GG~~~~~~~~~~~~~~d~~~~~W 130 (306)
T 3ii7_A 91 PRDSLAACAA--EGK---IYTSGGSEVGNSALYLFECYDTRTESW 130 (306)
T ss_dssp CCBSCEEEEE--TTE---EEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred cccceeEEEE--CCE---EEEECCCCCCCcEeeeEEEEeCCCCce
Confidence 1111122222 333 55666654 4588888877653
No 364
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.41 E-value=1.4 Score=51.03 Aligned_cols=104 Identities=14% Similarity=0.065 Sum_probs=56.5
Q ss_pred CCCCEEEEEec-C-----CeEEEEECCCCceEEE--EecCCCCeEEEEEccCCCcEEEEEeCCC-----cEEEEECCCCc
Q 048801 555 LDNRFVLAAIM-D-----CRICVWNAVDGSLVHS--LTGHSASSYVLDVHPFNPRIAMSAGYDG-----RTIVWDIWEGT 621 (1715)
Q Consensus 555 PDG~~LaTgs~-D-----GtI~IWDl~sg~~l~t--L~gH~~~V~sLafSP~dg~lLaSgs~DG-----tI~VWDl~tgk 621 (1715)
.++++++.|+. + ..+.+||+.+.+-... +........++.+ ++++++.||.++ .+.+||+.+.+
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE---CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 36777777776 2 3689999887643321 1111111122222 668888888665 48889988765
Q ss_pred eEEEEE--cccceEEEEEEcCCCCEEEEEeCCC--------------eEEEEECCCCc
Q 048801 622 PIRIYE--IGRFKLVDGKFSPDGTSIVLSDDVG--------------QIYLLNTGQGE 663 (1715)
Q Consensus 622 ~l~tl~--~h~~~V~svafSPDG~~LAsgs~DG--------------~I~IWdl~tGe 663 (1715)
-...-. ........+ .-++++++.|+.++ .|.+||+.+.+
T Consensus 224 W~~~~~~p~~r~~~~~~--~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 224 WAPFEAFPQERSSLSLV--SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EEEECCCSSCCBSCEEE--EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred EEECCCCCCcccceeEE--EECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 433221 111111122 22667777776532 36677776653
No 365
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.30 E-value=12 Score=44.65 Aligned_cols=101 Identities=12% Similarity=0.012 Sum_probs=54.0
Q ss_pred CeeEEEeCCCCCEEEEEe-cCCeEEEEECCCCc------------------eEEEEecCCCCeEEEEEccCCCcEEEEEe
Q 048801 547 GVNMIVWSLDNRFVLAAI-MDCRICVWNAVDGS------------------LVHSLTGHSASSYVLDVHPFNPRIAMSAG 607 (1715)
Q Consensus 547 ~VtslafSPDG~~LaTgs-~DGtI~IWDl~sg~------------------~l~tL~gH~~~V~sLafSP~dg~lLaSgs 607 (1715)
....++|+|+|.+.++-. .++.=.|--+..|. ++..+..+......|+|. ++.+++..-
T Consensus 203 Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~--~g~~~~~~l 280 (347)
T 3das_A 203 NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA--EGSVWMAGL 280 (347)
T ss_dssp BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE--TTEEEEEES
T ss_pred CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE--cCceeeccc
Confidence 456789999887666532 22222222222221 123333232345677775 355665555
Q ss_pred CCCcEEEEECCCCce----EEEEEcccceEEEEEEcCCCCEEEEEe
Q 048801 608 YDGRTIVWDIWEGTP----IRIYEIGRFKLVDGKFSPDGTSIVLSD 649 (1715)
Q Consensus 608 ~DGtI~VWDl~tgk~----l~tl~~h~~~V~svafSPDG~~LAsgs 649 (1715)
..+.|....+..+.. ...+.+..+.+.+|++.|||.++++.+
T Consensus 281 ~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 281 RGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 555666666654322 222323345788888899987766654
No 366
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.26 E-value=2 Score=59.38 Aligned_cols=275 Identities=12% Similarity=0.103 Sum_probs=151.5
Q ss_pred CCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcc
Q 048801 263 DDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAI 342 (1715)
Q Consensus 263 ~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~ 342 (1715)
....|.|-|+..+..+..-. -.--+.-.+|..+.||.-. ..++.|+|+++...+..+.- ...|.-=.|-....
T Consensus 46 ~~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~-- 118 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-- 118 (1630)
T ss_pred CCceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCe--
Confidence 34478899988765432111 1112234678777777654 67999999998887777663 34566667766543
Q ss_pred eEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec------
Q 048801 343 YQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS------ 416 (1715)
Q Consensus 343 ~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs------ 416 (1715)
|+..+ +..|..|++.... .+...+... ....+.+|..-..+++.++++..|
T Consensus 119 --l~lVT-~~aVyHW~~~~~s-~P~k~fdR~-------------------~~L~~~QIinY~~d~~~kW~~l~gi~~~~~ 175 (1630)
T 1xi4_A 119 --VALVT-DNAVYHWSMEGES-QPVKMFDRH-------------------SSLAGCQIINYRTDAKQKWLLLTGISAQQN 175 (1630)
T ss_pred --eEEEc-CCeEEEeccCCCC-ccHHHHhcc-------------------hhcccCeeEEeeeCCCCCeEEEEeeccCCC
Confidence 33333 3459999996421 111111000 011246688888888998877543
Q ss_pred -CCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEc--
Q 048801 417 -SDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-- 493 (1715)
Q Consensus 417 -~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-- 493 (1715)
-.|.+.+|..... ..+.+.||.+....+....... ....++.+.
T Consensus 176 ~v~G~mQLyS~er~----------~sQ~iegha~~F~~~~~~~~~~-----------------------~~~l~~f~~~~ 222 (1630)
T 1xi4_A 176 RVVGAMQLYSVDRK----------VSQPIEGHAASFAQFKMEGNAE-----------------------ESTLFCFAVRG 222 (1630)
T ss_pred cccceeeeeecccc----------cchhhhHhHhhhheeccCCCCC-----------------------CceEEEEEEec
Confidence 3578889988753 2345677766554444332210 011222221
Q ss_pred -CCCeEEEEecCCCccCccccccc-ccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEE
Q 048801 494 -RDGSAIIWIPRSRRSHGKVGRWT-RAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICV 571 (1715)
Q Consensus 494 -~DGsIrIWDl~t~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~I 571 (1715)
..+.+.|-++..... +. +.+. +...+..++ .....-..++..|+....+..-+.-|.|++
T Consensus 223 ~~g~kLhi~Ei~~~~~-~~-~~f~kk~~~~~~~~----------------~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~ 284 (1630)
T 1xi4_A 223 QAGGKLHIIEVGTPPT-GN-QPFPKKAVDVFFPP----------------EAQNDFPVAMQISEKHDVVFLITKYGYIHL 284 (1630)
T ss_pred CCCceEEEEecCCCcc-CC-CCCccccccccCCc----------------ccccCcceEEEeccccCEEEEEecCceEEE
Confidence 136888887754200 00 0000 000000000 011222446778888888888899999999
Q ss_pred EECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC
Q 048801 572 WNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE 619 (1715)
Q Consensus 572 WDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t 619 (1715)
+|+.+|.++..-+-...+|...+.+...+.++ .....|.|.--.+..
T Consensus 285 ~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~-~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 285 YDLETGTCIYMNRISGETIFVTAPHEATAGII-GVNRKGQVLSVCVEE 331 (1630)
T ss_pred EecccchhhhhccccCCceEEeccCCCCCceE-EEcCCceEEEEEEcc
Confidence 99999998876655555555544443222232 223455554444443
No 367
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=93.74 E-value=14 Score=43.69 Aligned_cols=59 Identities=10% Similarity=0.166 Sum_probs=38.8
Q ss_pred CCeeEEEeCC-------CCCEEEEEecCCeEEEEECCCCceEEE--E-ecCCCCeEEEEEccCCCcEEEE
Q 048801 546 RGVNMIVWSL-------DNRFVLAAIMDCRICVWNAVDGSLVHS--L-TGHSASSYVLDVHPFNPRIAMS 605 (1715)
Q Consensus 546 ~~VtslafSP-------DG~~LaTgs~DGtI~IWDl~sg~~l~t--L-~gH~~~V~sLafSP~dg~lLaS 605 (1715)
..+..++|.. +|.++++....+.|...++..++.+.. + ......+..|++.| ++.++++
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p-dG~lyv~ 339 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP-DGYLYVL 339 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT-TSCEEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC-CCcEEEE
Confidence 3567777753 577777777788888888876654432 2 23345788999999 4555543
No 368
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=93.47 E-value=1.7 Score=50.21 Aligned_cols=102 Identities=13% Similarity=0.039 Sum_probs=55.2
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCceEEE--EecCCCCeEEEEEccCCCcEEEEEeCC-----CcEEEEECCCCceE
Q 048801 556 DNRFVLAAIMD-----CRICVWNAVDGSLVHS--LTGHSASSYVLDVHPFNPRIAMSAGYD-----GRTIVWDIWEGTPI 623 (1715)
Q Consensus 556 DG~~LaTgs~D-----GtI~IWDl~sg~~l~t--L~gH~~~V~sLafSP~dg~lLaSgs~D-----GtI~VWDl~tgk~l 623 (1715)
++.+++.|+.+ ..+.+||+.+.+-... +........++.+ ++.+++.||.+ ..+.+||+.+.+-.
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence 67777777764 3588999877653321 1111111223333 66788888765 46899998876543
Q ss_pred EE--EEcccceEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCC
Q 048801 624 RI--YEIGRFKLVDGKFSPDGTSIVLSDDV-----GQIYLLNTGQG 662 (1715)
Q Consensus 624 ~t--l~~h~~~V~svafSPDG~~LAsgs~D-----G~I~IWdl~tG 662 (1715)
.. +.........+. -++++++.|+.+ ..|.+||+.+.
T Consensus 245 ~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 245 FVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp ECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred ECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 22 111111111122 256666666643 34666666554
No 369
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=93.41 E-value=3.2 Score=47.82 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=37.7
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCceEEE--EecCCCCeEEEEEccCCCcEEEEEeCCC-----cEEEEECCCCce
Q 048801 556 DNRFVLAAIMD-----CRICVWNAVDGSLVHS--LTGHSASSYVLDVHPFNPRIAMSAGYDG-----RTIVWDIWEGTP 622 (1715)
Q Consensus 556 DG~~LaTgs~D-----GtI~IWDl~sg~~l~t--L~gH~~~V~sLafSP~dg~lLaSgs~DG-----tI~VWDl~tgk~ 622 (1715)
++.+++.|+.+ ..|.+||+.+.+-... +.........+.+ ++++++.||.++ .|.+||+.+.+-
T Consensus 215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH---QGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE---CCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 67788888765 4689999987653322 1111111222222 567888887543 467788766543
No 370
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=93.16 E-value=17 Score=42.86 Aligned_cols=259 Identities=9% Similarity=0.071 Sum_probs=143.4
Q ss_pred CeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCC
Q 048801 307 FVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSN 386 (1715)
Q Consensus 307 GtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~ 386 (1715)
..|.|-|+.++..+..-.- ..-+.-.+|..+ .|+.-. ..+|.|+|+.+.+.+....++
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi---~AdsAIMnP~~~---ViALra-g~~LQiFnletK~klks~~~~--------------- 106 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPI---SADSAIMNPASK---VIALKA-GKTLQIFNIEMKSKMKAHTMT--------------- 106 (365)
T ss_dssp EEEEEEETTSTTSCEEEEC---CCSEEEECSSSS---EEEEEE-TTEEEEEETTTTEEEEEEECS---------------
T ss_pred CEEEEEECCCCCCcccccc---ccceeeeCCCcc---EEEEec-CCeEEEechHHhhhhcceecC---------------
Confidence 3788889988655432211 112334577765 444443 678999999988776665542
Q ss_pred CCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCC----CCeeEEEEccCccc
Q 048801 387 NGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE----NDVNYVQFSGCAVA 462 (1715)
Q Consensus 387 ~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~----~~V~sLafspdg~a 462 (1715)
..|.-=.|-.+. .|+..+ +..|+-|++.... . +...+..|. ..|.....+++.
T Consensus 107 -----------e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s-----~---P~kvFdR~~~L~~~QIInY~~d~~~-- 163 (365)
T 2xzh_A 107 -----------DDVTFWKWISLN-TVALVT-DNAVYHWSMEGES-----Q---PVKMFDRHSSLAGCQIINYRTDAKQ-- 163 (365)
T ss_dssp -----------SCEEEEEECSSS-EEEEEE-SSEEEEEESSTTC-----C---CEEEEECCGGGTTCEEEEEEECTTS--
T ss_pred -----------CccEEEEecCCC-eEEEEc-CCcEEEEcccCCC-----C---CceeeecchhcccceEEEEEECCCC--
Confidence 224444554443 344333 4689999986421 2 233333332 344444444443
Q ss_pred ccccccccccccccccccCCcccCceEEEEc-------CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCCC
Q 048801 463 SRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-------RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPRG 535 (1715)
Q Consensus 463 s~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-------~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g 535 (1715)
+.++..+ -.|.+.+|..+.+..
T Consensus 164 ------------------------kW~~l~GI~~~~~~v~G~mQLYS~er~~s--------------------------- 192 (365)
T 2xzh_A 164 ------------------------KWLLLTGISAQQNRVVGAMQLYSVDRKVS--------------------------- 192 (365)
T ss_dssp ------------------------CEEEEEEEEEETTEEEEEEEEEETTTTEE---------------------------
T ss_pred ------------------------CEEEEEeEeccCCccceeEEEEeeccccc---------------------------
Confidence 2332222 236778887764321
Q ss_pred CCcccccCCCCCeeEEEeC--CC-CCEEEEEec---CCeEEEEECCCC---ce------EEEEe---cCCCCeEEEEEcc
Q 048801 536 GPRQRLLPTPRGVNMIVWS--LD-NRFVLAAIM---DCRICVWNAVDG---SL------VHSLT---GHSASSYVLDVHP 597 (1715)
Q Consensus 536 ~~~~~l~~h~~~VtslafS--PD-G~~LaTgs~---DGtI~IWDl~sg---~~------l~tL~---gH~~~V~sLafSP 597 (1715)
+.+.+|......+.+. +. ..+++.+.. .+.++|-++... .. +..+- .-.+--.++..++
T Consensus 193 ---Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~ 269 (365)
T 2xzh_A 193 ---QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE 269 (365)
T ss_dssp ---EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEET
T ss_pred ---ceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecc
Confidence 1122222211111111 00 112222222 257888887432 11 11111 1233345677776
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 598 FNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 598 ~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
.-.++..-..-|.|++||+.+|.++..-......|...+-.....-+++....|+|.-..+.....+
T Consensus 270 -kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 270 -KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp -TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTHH
T ss_pred -cCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcccEe
Confidence 3445666778999999999999999888877778877666666556666678888888777665544
No 371
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=93.16 E-value=4.2 Score=46.98 Aligned_cols=60 Identities=8% Similarity=0.035 Sum_probs=34.8
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEE-EecCCCCCeEEEEECCCCCEEEEEeC-----C------CeeEEEECCCCC
Q 048801 257 FVITGSDDRLVKIWSMETAFCLA-SCRGHEGDITDLAVSSNNTLVASASN-----D------FVIRVWRLPDGL 318 (1715)
Q Consensus 257 ~LaTGS~DGtIrIWDl~tgk~l~-tL~gHs~~VtsLafSpDg~lLASGS~-----D------GtIrVWDl~tg~ 318 (1715)
+++.|+ ..+.+||..+.+-.. .+..........+...++.+++.|+. . ..+.+||+.+.+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~ 78 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE 78 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe
Confidence 344555 578999998876432 22222223333444557888888873 1 126778887654
No 372
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=92.79 E-value=24 Score=43.49 Aligned_cols=54 Identities=13% Similarity=0.057 Sum_probs=36.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceE--EEeC------CCCCeEEEEecCC
Q 048801 285 EGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPIS--VLRG------HTGAVTAIAFSPR 338 (1715)
Q Consensus 285 s~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~--~L~g------H~~~VtsLafSPd 338 (1715)
-...+.|+|.|+|+++++-...+.|++++..++.... .+.. ..+.+..|+|+|+
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pd 87 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCC
Confidence 4466799999999987776544578888765564322 2221 2456789999996
No 373
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=92.70 E-value=18 Score=43.25 Aligned_cols=195 Identities=13% Similarity=0.071 Sum_probs=103.1
Q ss_pred CCCeeEEEECCCCC-ceEE--EeC-----CCCCeEEEEecCC--CCcceEEEEecC--CCcEEEEecCCCCCcceecCCC
Q 048801 305 NDFVIRVWRLPDGL-PISV--LRG-----HTGAVTAIAFSPR--PSAIYQLLSSSD--DGTCRIWDARYSQYSPRIYLPK 372 (1715)
Q Consensus 305 ~DGtIrVWDl~tg~-~l~~--L~g-----H~~~VtsLafSPd--g~~~~~LaSgS~--DGtVrIWDl~tg~~l~~i~~~~ 372 (1715)
.+|.|.++|+.+.. .... +.+ ..-....|.+.++ +. .+++++-.. +.+|.+|++..+.....+...
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~-~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~- 158 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNT-VYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKT- 158 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCC-EEEEEEECSTTCCEEEEEEEETTTTEEEEEEE-
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCc-EEEEEEECCCCCCeEEEEEEECCCCEEEEEec-
Confidence 68999999987421 1222 222 2235677777663 32 223333222 567888877654221111100
Q ss_pred CCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEec-----------------CCCeEEEEeCCCCCccCCC
Q 048801 373 PPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGS-----------------SDTFARVWSACKSSVEDSE 435 (1715)
Q Consensus 373 ~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs-----------------~DG~IrVWDl~t~~~~~~~ 435 (1715)
..+ ..-.....+++.++|.+.++.. ..|.|.-++. ++
T Consensus 159 ----~~g---------------~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~----- 212 (355)
T 3sre_A 159 ----IRH---------------KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND----- 212 (355)
T ss_dssp ----ECC---------------TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-----
T ss_pred ----ccc---------------CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-----
Confidence 000 0123468899999999877754 1244444443 11
Q ss_pred CCceeeeeecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCcccccc
Q 048801 436 QPIHELDVLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRW 515 (1715)
Q Consensus 436 ~~~~~l~~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~ 515 (1715)
+..+...-..-+.++|+|++ ...+++-+..+.|..|++.... .+..
T Consensus 213 -----~~~~~~~l~~pNGia~spDg-------------------------~~lYvadt~~~~I~~~~~~~~g---~l~~- 258 (355)
T 3sre_A 213 -----VRVVAEGFDFANGINISPDG-------------------------KYVYIAELLAHKIHVYEKHANW---TLTP- 258 (355)
T ss_dssp -----CEEEEEEESSEEEEEECTTS-------------------------SEEEEEEGGGTEEEEEEECTTS---CEEE-
T ss_pred -----EEEeecCCcccCcceECCCC-------------------------CEEEEEeCCCCeEEEEEECCCC---cEec-
Confidence 11222223356889999987 2455666678899999886311 1100
Q ss_pred cccccccCCCCCCCCCCCCCCCcccccCCCCCeeEEEeCC-CCCEEEEEecC-CeEEEEECC--CCceEEEEe
Q 048801 516 TRAYHLKVPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSL-DNRFVLAAIMD-CRICVWNAV--DGSLVHSLT 584 (1715)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSP-DG~~LaTgs~D-GtI~IWDl~--sg~~l~tL~ 584 (1715)
.+. + ...+....+++.+ +|++.+++..+ +.|..|+.. .+..+..+.
T Consensus 259 ~~~----------------------~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 259 LRV----------------------L-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEE----------------------E-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred CEE----------------------E-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 000 1 1134567889999 59887766644 345555543 244444444
No 374
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=92.56 E-value=5.7 Score=47.52 Aligned_cols=101 Identities=12% Similarity=0.035 Sum_probs=64.0
Q ss_pred CCeeEEEeCCCCCEEEEEec-----------------CCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeC
Q 048801 546 RGVNMIVWSLDNRFVLAAIM-----------------DCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGY 608 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~-----------------DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~ 608 (1715)
...+.+++.++|.++++... .|.|+.++. ++.. .+...-..-+.|+|+|++..+.++-+.
T Consensus 165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt~ 241 (355)
T 3sre_A 165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVR-VVAEGFDFANGINISPDGKYVYIAELL 241 (355)
T ss_dssp SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCE-EEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEE-EeecCCcccCcceECCCCCEEEEEeCC
Confidence 35788999999998887541 245655654 3332 332233446899999955566666677
Q ss_pred CCcEEEEECCC-Cce--EEEEEcccceEEEEEEcC-CCCEEEEEeC
Q 048801 609 DGRTIVWDIWE-GTP--IRIYEIGRFKLVDGKFSP-DGTSIVLSDD 650 (1715)
Q Consensus 609 DGtI~VWDl~t-gk~--l~tl~~h~~~V~svafSP-DG~~LAsgs~ 650 (1715)
.+.|..|++.. |+. .+.+. ..+..-.+++.+ +|.+.+++..
T Consensus 242 ~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 242 AHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp GTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEES
T ss_pred CCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecC
Confidence 88999999863 432 22332 234455677787 4777665543
No 375
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=92.15 E-value=3.5 Score=47.75 Aligned_cols=65 Identities=11% Similarity=0.074 Sum_probs=37.7
Q ss_pred CCCCEEEEEecC------CeEEEEECCCCceEEE--EecCCCCeEEEEEccCCCcEEEEEeCCC-----cEEEEECCCCc
Q 048801 555 LDNRFVLAAIMD------CRICVWNAVDGSLVHS--LTGHSASSYVLDVHPFNPRIAMSAGYDG-----RTIVWDIWEGT 621 (1715)
Q Consensus 555 PDG~~LaTgs~D------GtI~IWDl~sg~~l~t--L~gH~~~V~sLafSP~dg~lLaSgs~DG-----tI~VWDl~tgk 621 (1715)
.++.+++.|+.+ ..+.+||+.+.+-... +........++.+ ++.+++.||.++ .+.+||+.+.+
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH---KGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE---CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 467777777642 3589999987654332 1111111122222 567888887543 47788887765
Q ss_pred e
Q 048801 622 P 622 (1715)
Q Consensus 622 ~ 622 (1715)
-
T Consensus 234 W 234 (318)
T 2woz_A 234 W 234 (318)
T ss_dssp E
T ss_pred E
Confidence 3
No 376
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=90.28 E-value=3.1 Score=50.69 Aligned_cols=109 Identities=18% Similarity=0.202 Sum_probs=76.3
Q ss_pred CeeEEEeCCCCCEEEEEecCCeEEEEECCCCc------------eEEEEec------CCCCeEEEEEccCCC--cEEEEE
Q 048801 547 GVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS------------LVHSLTG------HSASSYVLDVHPFNP--RIAMSA 606 (1715)
Q Consensus 547 ~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~------------~l~tL~g------H~~~V~sLafSP~dg--~lLaSg 606 (1715)
.|..+..||+|++||..+ +..|.|-.+..+. ..+.+.- ...+|..+.|||.+. ..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 577899999999999886 5588888887331 1223332 256799999999654 378888
Q ss_pred eCCCcEEEEECCCC--ceEEEEEc---------ccceEEEEEEcCCCCEEEEEe--CCCeEEEE
Q 048801 607 GYDGRTIVWDIWEG--TPIRIYEI---------GRFKLVDGKFSPDGTSIVLSD--DVGQIYLL 657 (1715)
Q Consensus 607 s~DGtI~VWDl~tg--k~l~tl~~---------h~~~V~svafSPDG~~LAsgs--~DG~I~IW 657 (1715)
..|++|++||+... ++. .+.. ....|.+++|..+|-.|.+.. ..|-|+-.
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 89999999999753 233 3321 113577889999887666644 66776643
No 377
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=89.51 E-value=46 Score=40.76 Aligned_cols=260 Identities=8% Similarity=0.058 Sum_probs=147.3
Q ss_pred CCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCC
Q 048801 306 DFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPS 385 (1715)
Q Consensus 306 DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~ 385 (1715)
...|.|-|+.++..+..-. -..-+.-.+|..+ .|+.-. ..++.|+|+.+...+....++.
T Consensus 47 ~~~vvIiDl~~~~~~~rrp---i~AdsAIMnP~~~---iiALra-g~~lQiFnle~K~klks~~~~e------------- 106 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASK---VIALKA-GKTLQIFNIEMKSKMKAHTMTD------------- 106 (494)
T ss_dssp CCEEEEEETTSTTSCEEEE---CCCSEEEECSSSS---CEEEEE-TTEEEEEETTTTEEEEEEECSS-------------
T ss_pred CCeEEEEECCCCCcceecc---cccceeeeCCCCc---EEEEec-CCeEEEEchHHhhhhcceecCC-------------
Confidence 3478888988765543221 1122445677765 344333 6789999999887766655422
Q ss_pred CCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCC----CCeeEEEEccCcc
Q 048801 386 NNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHE----NDVNYVQFSGCAV 461 (1715)
Q Consensus 386 ~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~----~~V~sLafspdg~ 461 (1715)
.|.-=.|-.+. .|+..+ +..|+-|++.... . +...+..|. ..|.....+++.
T Consensus 107 -------------~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s-----~---P~kvFdR~~~L~~~QIInY~~d~~~- 162 (494)
T 1bpo_A 107 -------------DVTFWKWISLN-TVALVT-DNAVYHWSMEGES-----Q---PVKMFDRHSSLAGCQIINYRTDAKQ- 162 (494)
T ss_dssp -------------CCCEEEEEETT-EEEEEC-SSEEEEEESSSSC-----C---CEEEEECCGGGTTCEEEEEEECTTS-
T ss_pred -------------CceEEEecCCC-eEEEEc-CCeeEEecccCCC-----C---chhheecchhcccceEEEEEECCCC-
Confidence 23333444333 344333 4689999986421 2 233333332 344444444443
Q ss_pred cccccccccccccccccccCCcccCceEEEEc-------CCCeEEEEecCCCccCcccccccccccccCCCCCCCCCCCC
Q 048801 462 ASRSAMSDAFKEENVPKFKNSWFCHDNIVTCS-------RDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPLPPQPPR 534 (1715)
Q Consensus 462 as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS-------~DGsIrIWDl~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 534 (1715)
+.++..+ -.|.+.+|..+.+.
T Consensus 163 -------------------------kW~~l~GI~~~~~~v~G~mQLYS~er~~--------------------------- 190 (494)
T 1bpo_A 163 -------------------------KWLLLTGISAQQNRVVGAMQLYSVDRKV--------------------------- 190 (494)
T ss_dssp -------------------------SEEEEEEEEEETTEEEEEEEEEESTTCC---------------------------
T ss_pred -------------------------CeEEEEeecccCCcccceEEEeeccccc---------------------------
Confidence 3333222 24678888776422
Q ss_pred CCCcccccCCCCCeeEEEeCCC---CCEEEEEec---CCeEEEEECCCC---c-----eEEE-Ee---cCCCCeEEEEEc
Q 048801 535 GGPRQRLLPTPRGVNMIVWSLD---NRFVLAAIM---DCRICVWNAVDG---S-----LVHS-LT---GHSASSYVLDVH 596 (1715)
Q Consensus 535 g~~~~~l~~h~~~VtslafSPD---G~~LaTgs~---DGtI~IWDl~sg---~-----~l~t-L~---gH~~~V~sLafS 596 (1715)
.+.+.+|......+.+..+ ..+++.+.. .+.++|.++... . .... +- .-.+--.++..+
T Consensus 191 ---sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs 267 (494)
T 1bpo_A 191 ---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS 267 (494)
T ss_dssp ---EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEE
T ss_pred ---cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEec
Confidence 1223333322222222111 112333322 368888888432 1 1111 11 123344577777
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 597 PFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 597 P~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
+ .-.++..-..-|.|++||+.+|.++..-......|...+-.....-+++....|.|.-..+.....+
T Consensus 268 ~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 268 E-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp T-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred c-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence 7 4445666778999999999999999888877778887777776666777778888888888766544
No 378
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=89.36 E-value=11 Score=44.23 Aligned_cols=53 Identities=9% Similarity=0.082 Sum_probs=27.1
Q ss_pred cEEEEECCCCceEE--EEEcccceEEEEEEcCCCCEEEEEeCCC------eEEEEECCCCccc
Q 048801 611 RTIVWDIWEGTPIR--IYEIGRFKLVDGKFSPDGTSIVLSDDVG------QIYLLNTGQGESQ 665 (1715)
Q Consensus 611 tI~VWDl~tgk~l~--tl~~h~~~V~svafSPDG~~LAsgs~DG------~I~IWdl~tGe~~ 665 (1715)
.+.+||+.+.+-.. .+...... ..++.-++++++.|+.++ .|.++++.+++.+
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred eEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence 57789987654333 22222221 222334777888887543 4566677766544
No 379
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=89.25 E-value=25 Score=49.03 Aligned_cols=74 Identities=12% Similarity=0.109 Sum_probs=50.6
Q ss_pred EEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc
Q 048801 591 YVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQGESQ 665 (1715)
Q Consensus 591 ~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~tGe~~ 665 (1715)
.++..++ .-.++..-+.-|.|.++|+.+|.++..-......|...+-.....-+++....|.|.-..+.....+
T Consensus 262 v~~~vs~-k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 262 VAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred eEEEecc-ccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 4566666 3345556678899999999999998766656666766555554444555567787777777655443
No 380
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=88.93 E-value=13 Score=41.59 Aligned_cols=102 Identities=12% Similarity=-0.021 Sum_probs=60.4
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEECCCCce-------EEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCC
Q 048801 548 VNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL-------VHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEG 620 (1715)
Q Consensus 548 VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~-------l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tg 620 (1715)
..++.|.|+|.+.++ .||.|+-++..+... ...-.+--..+..|.|.| ++.+.+.. ||.++-+...++
T Consensus 90 F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~ 164 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVS 164 (236)
T ss_dssp CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSS
T ss_pred ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCC
Confidence 478999999998887 569998887644211 111122234678999999 66666554 787544433222
Q ss_pred c------eEEEEE-cccceEEEEEEcCCCCEEEEEeCCCeEEE
Q 048801 621 T------PIRIYE-IGRFKLVDGKFSPDGTSIVLSDDVGQIYL 656 (1715)
Q Consensus 621 k------~l~tl~-~h~~~V~svafSPDG~~LAsgs~DG~I~I 656 (1715)
. ....+- .+-....-+.|+++|.+.++. +|.|+-
T Consensus 165 ~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y~ 205 (236)
T 1tl2_A 165 NQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFYE 205 (236)
T ss_dssp TTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred CCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEEe
Confidence 1 111121 111223346799999888777 675443
No 381
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=87.87 E-value=10 Score=44.37 Aligned_cols=56 Identities=11% Similarity=0.047 Sum_probs=29.6
Q ss_pred eEEEEECCCCce--EEEEecCCCCeEEEEEccCCCcEEEEEeCCC------cEEEEECCCCceEEEE
Q 048801 568 RICVWNAVDGSL--VHSLTGHSASSYVLDVHPFNPRIAMSAGYDG------RTIVWDIWEGTPIRIY 626 (1715)
Q Consensus 568 tI~IWDl~sg~~--l~tL~gH~~~V~sLafSP~dg~lLaSgs~DG------tI~VWDl~tgk~l~tl 626 (1715)
.+.+||+.+.+- +..+........++.+ ++++++.||.++ .|.++++.+++.+...
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLPW---NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEEE---TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEEe---CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 578899876543 3333222222223333 678888888653 3555688777766543
No 382
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=87.53 E-value=1.7 Score=48.55 Aligned_cols=104 Identities=12% Similarity=0.020 Sum_probs=64.3
Q ss_pred CeeEEEeCCCCCEEEEEecCCeEEEEECCCCce------EEEEe--cCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECC
Q 048801 547 GVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSL------VHSLT--GHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIW 618 (1715)
Q Consensus 547 ~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~------l~tL~--gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~ 618 (1715)
.+..++|+|+|.+.++ .+|.++-.+..+... -..+- +-.. -.++.|.| ++.+.++ .||.|+-|+-.
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~-~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDP-NGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECT-TSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECC-CCCEEEe--CCCEEEEeCCC
Confidence 5779999999987776 677777666644211 11111 1111 36788988 6666655 56999888753
Q ss_pred CCce-------EEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 048801 619 EGTP-------IRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLN 658 (1715)
Q Consensus 619 tgk~-------l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWd 658 (1715)
+... ...-...=..+..|.|.|+|.+-++. +|.++-+.
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~ 160 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKAL 160 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEEC
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecC
Confidence 3111 11111122457899999999988877 77765443
No 383
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=85.93 E-value=30 Score=41.02 Aligned_cols=118 Identities=12% Similarity=0.069 Sum_probs=65.3
Q ss_pred CEEEEEeCCCeeEEEECCCCCceEEEeCC-CCCeEEEEec--CCCCcceEEEEe-cCCCcEEEEecCCCCCcceecCCCC
Q 048801 298 TLVASASNDFVIRVWRLPDGLPISVLRGH-TGAVTAIAFS--PRPSAIYQLLSS-SDDGTCRIWDARYSQYSPRIYLPKP 373 (1715)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tg~~l~~L~gH-~~~VtsLafS--Pdg~~~~~LaSg-S~DGtVrIWDl~tg~~l~~i~~~~~ 373 (1715)
.+|+.++.||.|.-.|..+|+.+..+... ..++....-. +.+.. .++.. +.||.|..++..+|.....+..+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~--~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYE--TLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSE--EEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCc--EEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 47889999999999999999999888654 1222221110 11111 33333 6899999999887754332222100
Q ss_pred CCCccCccCCCCCCCCCCCCCCCCccee-EEEEccCCCeEEEecCCCeEEEEeCCCCCc
Q 048801 374 PDAITGKSNVPSNNGPSSSNGLQSHQIL-CCAYNANGTVFVTGSSDTFARVWSACKSSV 431 (1715)
Q Consensus 374 ~~~i~g~~~~~~~~~~~~~~~~h~~~Vt-slafSpdG~~LatGs~DG~IrVWDl~t~~~ 431 (1715)
... ........+|. ..--...+..+.+|+.+|.+...|+.+++.
T Consensus 89 v~~--------------SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~ 133 (339)
T 2be1_A 89 VST--------------SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI 133 (339)
T ss_dssp HTT--------------CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE
T ss_pred eec--------------cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE
Confidence 000 00000000000 000001345788899999999999998754
No 384
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=85.73 E-value=13 Score=43.29 Aligned_cols=125 Identities=10% Similarity=0.031 Sum_probs=77.0
Q ss_pred EEeCCCCCEEEEEe----cCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEE
Q 048801 551 IVWSLDNRFVLAAI----MDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY 626 (1715)
Q Consensus 551 lafSPDG~~LaTgs----~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl 626 (1715)
..|++++.+|+-.. .+..|+..++. |.....+..+.. .+|+++++.+..+......|.+-++..+.....+
T Consensus 109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 109 IYASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEE
T ss_pred cEEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEe
Confidence 36788999988776 34466667765 444555555533 3456756666666554678888898666544433
Q ss_pred EcccceEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCccccc-cccceeecCCCccEEEc
Q 048801 627 EIGRFKLVDGKFSPDGTSIVLSDDV--GQIYLLNTGQGESQKD-AKYDQFFLGDYRPLIRD 684 (1715)
Q Consensus 627 ~~h~~~V~svafSPDG~~LAsgs~D--G~I~IWdl~tGe~~k~-~~~~~~fs~D~r~L~~d 684 (1715)
. + ... ..++|+|.+|+..+.. ..|..-++..+....- .....+|.+++..|.+.
T Consensus 184 ~-~--~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~~~~~~~~g~~Iy~~ 240 (302)
T 3s25_A 184 D-C--NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHYNVYGSLIFYQ 240 (302)
T ss_dssp C-S--CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCSCEEEEEEETTEEEEE
T ss_pred C-C--Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCCCcceEEECCCEEEEE
Confidence 3 2 222 2466999999977654 3677767755443221 11225688888888764
No 385
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=84.21 E-value=24 Score=40.50 Aligned_cols=108 Identities=7% Similarity=-0.001 Sum_probs=53.5
Q ss_pred EEcCCCCEEEEEeC----CC-------cEEEEeCCCCcEEEE--ecCCCCCeEEEEECCCCCEEEEEeCC-------Cee
Q 048801 250 IFDRSGRFVITGSD----DR-------LVKIWSMETAFCLAS--CRGHEGDITDLAVSSNNTLVASASND-------FVI 309 (1715)
Q Consensus 250 afSpDG~~LaTGS~----DG-------tIrIWDl~tgk~l~t--L~gHs~~VtsLafSpDg~lLASGS~D-------GtI 309 (1715)
+...++.+++.|+. ++ .+.+||..+.+-... +.........+.+ ++.+++.|+.+ ..+
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 129 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSV 129 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceE
Confidence 34457778888873 12 177788876643221 1111112222223 67777777754 247
Q ss_pred EEEECCCCCceEEEeCCCCCe--EEEEecCCCCcceEEEEecC------CCcEEEEecCCCCC
Q 048801 310 RVWRLPDGLPISVLRGHTGAV--TAIAFSPRPSAIYQLLSSSD------DGTCRIWDARYSQY 364 (1715)
Q Consensus 310 rVWDl~tg~~l~~L~gH~~~V--tsLafSPdg~~~~~LaSgS~------DGtVrIWDl~tg~~ 364 (1715)
.+||+.+.+-... ....... .+++. .++. .++.|+. -..+.+||+.+...
T Consensus 130 ~~yd~~~~~W~~~-~~~p~~r~~~~~~~-~~~~---iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 130 LCYDPVAAKWSEV-KNLPIKVYGHNVIS-HNGM---IYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp EEEETTTTEEEEE-CCCSSCEESCEEEE-ETTE---EEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred EEEeCCCCCEeEC-CCCCCcccccEEEE-ECCE---EEEEcCCCCCCCccceEEEEcCCCCEE
Confidence 7888876543221 1111110 11222 2332 4555553 23588888877653
No 386
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=83.11 E-value=1.3 Score=39.82 Aligned_cols=55 Identities=11% Similarity=0.289 Sum_probs=43.7
Q ss_pred HhCCCCCCcceEEeecccCCCCCceEEEEEEEcccCCCCCCCCCCceeEEEECCCCCCCCCCCccCCCC
Q 048801 1532 ISRNWTHRDKCQIWWRNANGEGGTWWKGRITKSQAKSEEFPNSPWDRYMVEYKTGDSHLHSPWEMHDPN 1600 (1715)
Q Consensus 1532 ~~~~w~~g~rf~~~~~~e~~~~~~w~~GtI~~~~~~~p~~P~S~w~~l~V~wd~~~~~~~SpWeie~~~ 1600 (1715)
|--.|++|++|...| .+.+||.++|.++... ..|.|.++.+..+.+.+=+|.+..
T Consensus 3 ~~~~~~vGd~vmArW-----~D~~yYpA~I~si~~~---------~~Y~V~F~dG~~etvk~~~ikp~~ 57 (67)
T 3p8d_A 3 MSSEFQINEQVLACW-----SDCRFYPAKVTAVNKD---------GTYTVKFYDGVVQTVKHIHVKAFS 57 (67)
T ss_dssp --CCCCTTCEEEEEC-----TTSCEEEEEEEEECTT---------SEEEEEETTSCEEEEEGGGEEECC
T ss_pred cCcccccCCEEEEEc-----CCCCEeeEEEEEECCC---------CeEEEEEeCCceEEEeHHHcccCC
Confidence 445899999999998 2467999999998844 469999999888888877776543
No 387
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=80.66 E-value=34 Score=44.51 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=42.4
Q ss_pred CCCCEEEEEecCC--eEEEEECCCCceEEEEe-----cCCCCeEEEEEccCCCcEEEEEeC--C-----CcEEEEECCCC
Q 048801 555 LDNRFVLAAIMDC--RICVWNAVDGSLVHSLT-----GHSASSYVLDVHPFNPRIAMSAGY--D-----GRTIVWDIWEG 620 (1715)
Q Consensus 555 PDG~~LaTgs~DG--tI~IWDl~sg~~l~tL~-----gH~~~V~sLafSP~dg~lLaSgs~--D-----GtI~VWDl~tg 620 (1715)
.++.+++.|+.++ .+.+||+.+.+-...-. .......++.+...++.+++.||. + ..+.+||+.+.
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 4788888887655 68999998765332211 111222335555533678888876 2 35889999877
Q ss_pred c
Q 048801 621 T 621 (1715)
Q Consensus 621 k 621 (1715)
+
T Consensus 579 ~ 579 (695)
T 2zwa_A 579 N 579 (695)
T ss_dssp C
T ss_pred c
Confidence 6
No 388
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=78.51 E-value=2.1 Score=40.15 Aligned_cols=55 Identities=11% Similarity=0.247 Sum_probs=43.6
Q ss_pred HhCCCCCCcceEEeecccCCCCCceEEEEEEEcccCCCCCCCCCCceeEEEECCCCCCCCCCCccCCCC
Q 048801 1532 ISRNWTHRDKCQIWWRNANGEGGTWWKGRITKSQAKSEEFPNSPWDRYMVEYKTGDSHLHSPWEMHDPN 1600 (1715)
Q Consensus 1532 ~~~~w~~g~rf~~~~~~e~~~~~~w~~GtI~~~~~~~p~~P~S~w~~l~V~wd~~~~~~~SpWeie~~~ 1600 (1715)
-...|++|++|...| .+.+||-++|.+|... ..|.|+++++..+.+.+=+|.|..
T Consensus 18 ~~~~f~vGd~VlArW-----~D~~yYPAkI~sV~~~---------~~YtV~F~DG~~etvk~~~IKp~~ 72 (85)
T 3qii_A 18 GSSEFQINEQVLACW-----SDCRFYPAKVTAVNKD---------GTYTVKFYDGVVQTVKHIHVKAFS 72 (85)
T ss_dssp ---CCCTTCEEEEEC-----TTSCEEEEEEEEECTT---------SEEEEEETTSCEEEEEGGGEEECC
T ss_pred CCcccccCCEEEEEe-----CCCCEeeEEEEEECCC---------CeEEEEEeCCCeEEecHHHcccCC
Confidence 356899999999999 2467999999998854 369999999888888887777644
No 389
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=78.47 E-value=1.4e+02 Score=36.88 Aligned_cols=31 Identities=16% Similarity=0.158 Sum_probs=22.7
Q ss_pred CCeEEEEecCCCCcceEEEEecCCCcEEEEecC
Q 048801 328 GAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360 (1715)
Q Consensus 328 ~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~ 360 (1715)
...+.|+|.|++.. .|+++...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~--rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQ--RLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSC--CEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCe--EEEEEeCCceEEEEeCC
Confidence 34689999999842 25566778999999753
No 390
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=77.72 E-value=2.8 Score=49.83 Aligned_cols=109 Identities=12% Similarity=0.055 Sum_probs=71.4
Q ss_pred CEEEEEecCCeEEEEECCCCceEEEEecC-CCCeEEEEE--ccCCCcEEEEE-eCCCcEEEEECCCCceEEEEEccc---
Q 048801 558 RFVLAAIMDCRICVWNAVDGSLVHSLTGH-SASSYVLDV--HPFNPRIAMSA-GYDGRTIVWDIWEGTPIRIYEIGR--- 630 (1715)
Q Consensus 558 ~~LaTgs~DGtI~IWDl~sg~~l~tL~gH-~~~V~sLaf--SP~dg~lLaSg-s~DGtI~VWDl~tgk~l~tl~~h~--- 630 (1715)
.+|++++.||.|+-+|..+|+.+.++... ..++....- .+.++.+++.. ..||.|..++..+|.....+....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999999998754 122222110 01123444433 589999999999886665554221
Q ss_pred -ceEEE---EEE-----cCCCCEEEEEeCCCeEEEEECCCCcccc
Q 048801 631 -FKLVD---GKF-----SPDGTSIVLSDDVGQIYLLNTGQGESQK 666 (1715)
Q Consensus 631 -~~V~s---vaf-----SPDG~~LAsgs~DG~I~IWdl~tGe~~k 666 (1715)
.++.. ..+ +..+..+++|+.+|.++..|+.+|+.+-
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W 135 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIIS 135 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEE
Confidence 11211 001 0145578899999999999999998764
No 391
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=77.53 E-value=1e+02 Score=35.06 Aligned_cols=105 Identities=10% Similarity=-0.004 Sum_probs=54.6
Q ss_pred CeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCCCceEEEE
Q 048801 547 GVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIY 626 (1715)
Q Consensus 547 ~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~tgk~l~tl 626 (1715)
.|..++...+...+ -. ||.|+.|-......+..-..-...|..|+... ...++. .||.|+.|-....-.+..-
T Consensus 142 ~i~~i~~G~~~~~~--l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~--~hs~al--~~G~v~~wG~n~~gqlg~p 214 (282)
T 3qhy_B 142 GVTALDGGVYTALA--VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGI--FHSLAL--KDGKVIAWGDNRYKQTTVP 214 (282)
T ss_dssp SEEEEEECSSEEEE--EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS--SEEEEE--ETTEEEEEECCTTSTTCCC
T ss_pred CeEEEEcccCEEEE--EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecC--CEEEEE--ECCeEEEEECCCCCCCCCC
Confidence 46666654433222 23 79999998654222111111134577776633 233433 5999999976542222111
Q ss_pred EcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 627 EIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 627 ~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
......|..++...+. .+|.. +|.|+.|....
T Consensus 215 ~~~~~~v~~i~~G~~h-~~al~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 215 TEALSGVSAIASGEWY-SLALK--NGKVIAWGSSR 246 (282)
T ss_dssp GGGGSSCCEEEECSSC-EEEEE--TTEEEEESTTC
T ss_pred cccCCCceEEEcCCCE-EEEEE--CCEEEEecCCC
Confidence 1112345566554443 33333 89999997654
No 392
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=74.46 E-value=54 Score=42.59 Aligned_cols=108 Identities=9% Similarity=-0.015 Sum_probs=58.3
Q ss_pred CCCCEEEEEeCC----CcEEEEeCCCCcEEEEe-c-------CCCCCeEEEEECCCCCEEEEEeCC------CeeEEEEC
Q 048801 253 RSGRFVITGSDD----RLVKIWSMETAFCLASC-R-------GHEGDITDLAVSSNNTLVASASND------FVIRVWRL 314 (1715)
Q Consensus 253 pDG~~LaTGS~D----GtIrIWDl~tgk~l~tL-~-------gHs~~VtsLafSpDg~lLASGS~D------GtIrVWDl 314 (1715)
-++.+++.||.+ ..+.+||..+.+-...- . .....-.++.+..++.+++.|+.+ ..+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 466777778753 46888998876543322 1 111122233333277788888754 35788888
Q ss_pred CCCCceEE--EeCCCCCeEEEEecCCCCcceEEEEecCCC--cEEEEecCCCCC
Q 048801 315 PDGLPISV--LRGHTGAVTAIAFSPRPSAIYQLLSSSDDG--TCRIWDARYSQY 364 (1715)
Q Consensus 315 ~tg~~l~~--L~gH~~~VtsLafSPdg~~~~~LaSgS~DG--tVrIWDl~tg~~ 364 (1715)
.+..-... +...... .+++...++. .++.||.++ .+.+||+.+...
T Consensus 476 ~t~~W~~~~~~p~~R~~-h~~~~~~~~~---iyv~GG~~~~~~v~~yd~~t~~W 525 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFR-HSACSLPDGN---VLILGGVTEGPAMLLYNVTEEIF 525 (695)
T ss_dssp TTTEEEECCCCSBCCBS-CEEEECTTSC---EEEECCBCSSCSEEEEETTTTEE
T ss_pred CCCcEEECCCCCCCccc-ceEEEEcCCE---EEEECCCCCCCCEEEEECCCCce
Confidence 77532211 1111111 1223323444 566666544 688999887653
No 393
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=72.27 E-value=1.4e+02 Score=34.01 Aligned_cols=89 Identities=17% Similarity=0.172 Sum_probs=48.0
Q ss_pred CCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEeCCCCCeEEEEecCCCCcce
Q 048801 264 DRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSAIY 343 (1715)
Q Consensus 264 DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~gH~~~VtsLafSPdg~~~~ 343 (1715)
||.|..|-....-.+..-......|..|+......++ . . ||.|..|-......+..-..-...|..|+.....
T Consensus 41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~-l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~h---- 113 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLA-L-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWA---- 113 (282)
T ss_dssp TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEE-E-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTE----
T ss_pred CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEE-E-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCE----
Confidence 7777777654321111111123367777776443333 3 4 8999999765422221111113467888776653
Q ss_pred EEEEecCCCcEEEEecCC
Q 048801 344 QLLSSSDDGTCRIWDARY 361 (1715)
Q Consensus 344 ~LaSgS~DGtVrIWDl~t 361 (1715)
.+.-. ||.|..|-...
T Consensus 114 -s~al~-~G~v~~wG~n~ 129 (282)
T 3qhy_B 114 -SYALK-DGKVIAWGDDS 129 (282)
T ss_dssp -EEEEE-TTEEEEEECCT
T ss_pred -EEEEe-CCeEEEecCCC
Confidence 23334 89999996543
No 394
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=70.12 E-value=1.7e+02 Score=34.21 Aligned_cols=102 Identities=9% Similarity=0.082 Sum_probs=65.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC-------cEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC--CC----Cc-
Q 048801 254 SGRFVITGSDDRLVKIWSMETA-------FCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP--DG----LP- 319 (1715)
Q Consensus 254 DG~~LaTGS~DGtIrIWDl~tg-------k~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~--tg----~~- 319 (1715)
+..++++++.+|.|+.-.+... .....++. ...+..+........|+..+..|.+..+.+. .- +.
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a 186 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRAT 186 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTS
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCC
Confidence 5779999999999999987542 22223443 3445555555555678888889998888766 21 11
Q ss_pred --e--EEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecC
Q 048801 320 --I--SVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360 (1715)
Q Consensus 320 --l--~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~ 360 (1715)
+ ..|. ....|.++...+.+. +|+..+..|.++.-.+.
T Consensus 187 ~Gv~~i~L~-~~d~Vv~~~~~~~~~---~ll~~T~~G~~Krt~l~ 227 (327)
T 3uc1_A 187 SGVQGMRFN-IDDRLLSLNVVREGT---YLLVATSGGYAKRTAIE 227 (327)
T ss_dssp BCEESSCCC-TTCCEEEEEECCTTC---EEEEEETTSEEEEEEGG
T ss_pred CCeeeecCC-CCCEEEEEEEECCCC---EEEEEeCCCcEEEEEHH
Confidence 1 1122 234566666655544 68888889998887764
No 395
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=69.47 E-value=5.8 Score=35.25 Aligned_cols=55 Identities=15% Similarity=0.468 Sum_probs=41.4
Q ss_pred hCCCCCCcceEEeecccCCCCCceEEEEEEEcccCCCCCCCCCCceeEEEECC-CCCCCCCCCccCCC
Q 048801 1533 SRNWTHRDKCQIWWRNANGEGGTWWKGRITKSQAKSEEFPNSPWDRYMVEYKT-GDSHLHSPWEMHDP 1599 (1715)
Q Consensus 1533 ~~~w~~g~rf~~~~~~e~~~~~~w~~GtI~~~~~~~p~~P~S~w~~l~V~wd~-~~~~~~SpWeie~~ 1599 (1715)
...|++||.|...|.. .++||.++|+++.... ..+.|.+.. ++.+.|+.=+|.|.
T Consensus 6 ~~~~~vGd~c~A~~s~----Dg~wYrA~I~~v~~~~--------~~~~V~fvdYGn~e~V~~~~Lrpl 61 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSE----DGQCYEAEIEEIDEEN--------GTAAITFAGYGNAEVTPLLNLKPV 61 (64)
T ss_dssp SSCCCTTCEEEEECTT----TSSEEEEEEEEEETTT--------TEEEEEETTTTEEEEEEGGGEECC
T ss_pred CCCCCCCCEEEEEECC----CCCEEEEEEEEEcCCC--------CEEEEEEEecCCEEEEeHHHcEeC
Confidence 4689999999997632 3579999999988422 268899988 88877766566543
No 396
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=68.46 E-value=1.9e+02 Score=34.07 Aligned_cols=97 Identities=3% Similarity=-0.136 Sum_probs=46.7
Q ss_pred CEEEEEeCCCcEEEEeCC-CCcEEEEe--cCCCCCeEEEEECC--CCCEEEEEeCCC----eeEEEECCCCCceEEEeC-
Q 048801 256 RFVITGSDDRLVKIWSME-TAFCLASC--RGHEGDITDLAVSS--NNTLVASASNDF----VIRVWRLPDGLPISVLRG- 325 (1715)
Q Consensus 256 ~~LaTGS~DGtIrIWDl~-tgk~l~tL--~gHs~~VtsLafSp--Dg~lLASGS~DG----tIrVWDl~tg~~l~~L~g- 325 (1715)
..|..|...| +.+++.. .+.....+ ......|.+|++.| .+.++|. +..| .|... .+.|..-..+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g-~~~g~~g~gl~~s-~D~G~tW~~~~~~ 99 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMA-ARTGHLGPTVFRS-DDGGGNWTEATRP 99 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEE-EEC--CCEEEEEE-SSTTSCCEECSBC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEE-ecCCCCCccEEEe-CCCCCCceECCcc
Confidence 3566677777 4444432 22222211 12345799999998 4555544 4444 33322 233433332221
Q ss_pred -------------CCCCeEEEEecCCC-CcceEEEEecCCCcEEEE
Q 048801 326 -------------HTGAVTAIAFSPRP-SAIYQLLSSSDDGTCRIW 357 (1715)
Q Consensus 326 -------------H~~~VtsLafSPdg-~~~~~LaSgS~DGtVrIW 357 (1715)
+...|.+|++.|.+ .. .|..++..+.|...
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~--~l~~g~~~ggl~~S 143 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPG--TWYAGTSPQGLFRS 143 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTT--CEEEEEETTEEEEE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCC--EEEEEecCCcEEEE
Confidence 11257789998732 22 34555445545444
No 397
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=66.51 E-value=1.9e+02 Score=33.30 Aligned_cols=97 Identities=10% Similarity=0.004 Sum_probs=52.2
Q ss_pred EcCCCCEEEEEe--CCCcEEEEeCCCCcEEEEecCCCCCeEEEEECCCCCEEEEEeCC--------------CeeEEEEC
Q 048801 251 FDRSGRFVITGS--DDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNTLVASASND--------------FVIRVWRL 314 (1715)
Q Consensus 251 fSpDG~~LaTGS--~DGtIrIWDl~tgk~l~tL~gHs~~VtsLafSpDg~lLASGS~D--------------GtIrVWDl 314 (1715)
|+.+|.+|+... .++.|...+.+... ...+... .+--++++|.+|+-+... ..|+..++
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 345677777664 34566666654333 3333321 234557888888877543 36777787
Q ss_pred CCCCceEEEeCCCCCeEEEEecCCCCcceEEEEe----cCCCcEEEEecC
Q 048801 315 PDGLPISVLRGHTGAVTAIAFSPRPSAIYQLLSS----SDDGTCRIWDAR 360 (1715)
Q Consensus 315 ~tg~~l~~L~gH~~~VtsLafSPdg~~~~~LaSg----S~DGtVrIWDl~ 360 (1715)
..+.... +... . +..|++++.. |+-. .....|...++.
T Consensus 96 dg~~~~~-l~~~--~--~~~~s~~g~~---Iy~~~~~~~~~~~Iy~~~~d 137 (302)
T 3s25_A 96 NGHGSTV-LDPD--P--CIYASLIGNY---IYYLHYDTQTATSLYRIRID 137 (302)
T ss_dssp TSCCCEE-EECS--C--EEEEEEETTE---EEEEEESSSSCEEEEEEETT
T ss_pred CCCcceE-eecC--C--ccEEEEeCCE---EEEEeecCCCCceEEEEECC
Confidence 7665433 3322 1 2366777773 3333 233445555554
No 398
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=65.88 E-value=8.5 Score=32.84 Aligned_cols=50 Identities=10% Similarity=0.294 Sum_probs=35.8
Q ss_pred CCCCCcceEEeecccCCCCCceEEEEEEEcccCCCCCCCCCCceeEEEECC-CCCCCCCCCcc
Q 048801 1535 NWTHRDKCQIWWRNANGEGGTWWKGRITKSQAKSEEFPNSPWDRYMVEYKT-GDSHLHSPWEM 1596 (1715)
Q Consensus 1535 ~w~~g~rf~~~~~~e~~~~~~w~~GtI~~~~~~~p~~P~S~w~~l~V~wd~-~~~~~~SpWei 1596 (1715)
.|++|+.|...|.. .++||.++|.++.... ..+.|.+.. ++.+.|+.=+|
T Consensus 1 ~wk~G~~c~A~~s~----Dg~wYrA~I~~i~~~~--------~~~~V~fvDYGn~e~v~~~~l 51 (54)
T 3s6w_A 1 MWKPGDECFALYWE----DNKFYRAEVEALHSSG--------MTAVVKFIDYGNYEEVLLSNI 51 (54)
T ss_dssp CCCTTCEEEEEETT----TTEEEEEEEEEC--CC--------SEEEEEETTTCCEEEEEGGGE
T ss_pred CCCCCCEEEEEECC----CCCEEEEEEEEEeCCC--------CEEEEEEEccCCeEEEeHHHE
Confidence 49999999997622 3579999999986432 467899987 77776654443
No 399
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=65.67 E-value=2.1e+02 Score=33.49 Aligned_cols=164 Identities=13% Similarity=0.107 Sum_probs=88.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEe---CCC------CcEEEE---ecCCCCCeEEEE-ECC--CCCEEEEEeCCCee
Q 048801 245 AVYCAIFDRSGRFVITGSDDRLVKIWS---MET------AFCLAS---CRGHEGDITDLA-VSS--NNTLVASASNDFVI 309 (1715)
Q Consensus 245 ~Vt~VafSpDG~~LaTGS~DGtIrIWD---l~t------gk~l~t---L~gHs~~VtsLa-fSp--Dg~lLASGS~DGtI 309 (1715)
.+..+........|+.-+..|.+.-.. +.. |..+.. +. ....|.++. +.. +..+++.++.+|.|
T Consensus 43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~i 121 (327)
T 3uc1_A 43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLV 121 (327)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence 344444444444555555666655443 321 222211 22 234455554 432 57899999999999
Q ss_pred EEEECCCCC-------ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccC
Q 048801 310 RVWRLPDGL-------PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSN 382 (1715)
Q Consensus 310 rVWDl~tg~-------~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~ 382 (1715)
+--.+.... ....+.. .+.+..+....... .|+..+..|.+..+.+...+ ++.. .....|.
T Consensus 122 Kr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d---~ill~T~~G~~~rf~~~~~e-ip~~-----gr~a~Gv-- 189 (327)
T 3uc1_A 122 KKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGD---DLLLVSANGQSIRFSATDEA-LRPM-----GRATSGV-- 189 (327)
T ss_dssp EEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTC---EEEEEETTSEEEEEECCTTT-SCCC-----CTTSBCE--
T ss_pred EEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCC---EEEEEECCCeEEEEECcccc-cCcC-----CcCCCCe--
Confidence 998875422 1112332 34455554444443 57777788888877765211 1110 0000111
Q ss_pred CCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCC
Q 048801 383 VPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 383 ~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t 428 (1715)
..........|.++...+++..|+..+..|.++.-.+..
T Consensus 190 -------~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 190 -------QGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp -------ESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred -------eeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 011112345677777666677888899999998887654
No 400
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=64.59 E-value=9.9 Score=33.11 Aligned_cols=53 Identities=21% Similarity=0.484 Sum_probs=40.0
Q ss_pred CCCCCCcceEEeecccCCCCCceEEEEEEEcccCCCCCCCCCCceeEEEECC-CCCCCCCCCccCC
Q 048801 1534 RNWTHRDKCQIWWRNANGEGGTWWKGRITKSQAKSEEFPNSPWDRYMVEYKT-GDSHLHSPWEMHD 1598 (1715)
Q Consensus 1534 ~~w~~g~rf~~~~~~e~~~~~~w~~GtI~~~~~~~p~~P~S~w~~l~V~wd~-~~~~~~SpWeie~ 1598 (1715)
+.|++|+.|...|.. .+.||.++|+++.... ..+.|.+.. ++.+.|..=+|-+
T Consensus 2 ~~~~~G~~c~A~~s~----Dg~wYrA~I~~i~~~~--------~~~~V~f~DYGn~e~v~~~~Lr~ 55 (59)
T 1mhn_A 2 QQWKVGDKCSAIWSE----DGCIYPATIASIDFKR--------ETCVVVYTGYGNREEQNLSDLLS 55 (59)
T ss_dssp CCCCTTCEEEEECTT----TSCEEEEEEEEEETTT--------TEEEEEETTTTEEEEEEGGGCBC
T ss_pred CcCCcCCEEEEEECC----CCCEEEEEEEEEcCCC--------CEEEEEEEcCCCEEEEcHHHeeC
Confidence 579999999997732 3579999999986422 478999988 8777776655554
No 401
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.60 E-value=9.6 Score=34.99 Aligned_cols=52 Identities=8% Similarity=0.259 Sum_probs=39.5
Q ss_pred hCCCCCCcceEEeecccCCCCCceEEEEEEEcccCCCCCCCCCCceeEEEECCCCCCCCCCCccCC
Q 048801 1533 SRNWTHRDKCQIWWRNANGEGGTWWKGRITKSQAKSEEFPNSPWDRYMVEYKTGDSHLHSPWEMHD 1598 (1715)
Q Consensus 1533 ~~~w~~g~rf~~~~~~e~~~~~~w~~GtI~~~~~~~p~~P~S~w~~l~V~wd~~~~~~~SpWeie~ 1598 (1715)
...|.+|++|.-.|. .+.||.++|.++... ..|.|.++....+.+.+=.|.|
T Consensus 7 ~~~~kvGd~clA~ws-----Dg~~Y~A~I~~v~~~---------~~~~V~f~Dyn~e~v~~~~lrp 58 (74)
T 2equ_A 7 GFDFKAGEEVLARWT-----DCRYYPAKIEAINKE---------GTFTVQFYDGVIRCLKRMHIKA 58 (74)
T ss_dssp CCCCCTTCEEEEECS-----SSSEEEEEEEEESTT---------SSEEEEETTSCEEEECGGGEEC
T ss_pred CCCCCCCCEEEEECC-----CCCEEEEEEEEECCC---------CEEEEEEecCCeEEecHHHCee
Confidence 468999999999884 357999999998631 4689999887666665545544
No 402
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=61.87 E-value=12 Score=35.49 Aligned_cols=56 Identities=23% Similarity=0.490 Sum_probs=43.1
Q ss_pred hCCCCCCcceEEeecccCCCCCceEEEEEEEcccCCCCCCCCCCceeEEEECC-CCCCCCCCCccCCCC
Q 048801 1533 SRNWTHRDKCQIWWRNANGEGGTWWKGRITKSQAKSEEFPNSPWDRYMVEYKT-GDSHLHSPWEMHDPN 1600 (1715)
Q Consensus 1533 ~~~w~~g~rf~~~~~~e~~~~~~w~~GtI~~~~~~~p~~P~S~w~~l~V~wd~-~~~~~~SpWeie~~~ 1600 (1715)
...|.+||.|...|. ..+.||.++|.++.... ..+.|.+.. +..+.|..=+|-|..
T Consensus 8 ~~~~kvGd~C~A~ys----~Dg~wYrA~I~~i~~~~--------~~~~V~fiDYGN~E~V~~~~Lrp~~ 64 (88)
T 1g5v_A 8 LQQWKVGDKCSAIWS----EDGCIYPATIASIDFKR--------ETCVVVYTGYGNREEQNLSDLLSPI 64 (88)
T ss_dssp -CCCCSSCEEEEECT----TTCCEEEEEEEEEETTT--------TEEEEEETTTCCEEEEEGGGCBCCC
T ss_pred cCCCCCCCEEEEEEC----CCCCEEEEEEEEecCCC--------CEEEEEEecCCCEEEEcHHHcccCC
Confidence 468999999999773 24579999999996531 468999988 888888777776543
No 403
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=61.82 E-value=2.3e+02 Score=32.74 Aligned_cols=102 Identities=13% Similarity=0.155 Sum_probs=63.6
Q ss_pred CCCEEEEEecCCeEEEEECCC-------CceEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEEECCC---------
Q 048801 556 DNRFVLAAIMDCRICVWNAVD-------GSLVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVWDIWE--------- 619 (1715)
Q Consensus 556 DG~~LaTgs~DGtI~IWDl~s-------g~~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VWDl~t--------- 619 (1715)
++.+|+..+..|.++...+.. |.....+.. .+.+..+.... +...++..+.+|.+..+.+..
T Consensus 113 ~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~-~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~ 190 (312)
T 1suu_A 113 DDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVF-KDEKVICLSKKGSAFIFNSRDVRLTNRGTQ 190 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTTBC
T ss_pred CCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeC-CCCEEEEEeCCCcEEEEEHHHccccCCCCC
Confidence 467788899999999888743 222223333 44555555543 344566778899998888643
Q ss_pred CceEEEEEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 048801 620 GTPIRIYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTG 660 (1715)
Q Consensus 620 gk~l~tl~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~ 660 (1715)
|...-.+. ....|..+..-.++..|++.+..|.+....+.
T Consensus 191 Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 191 GVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp CEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred CeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 22222222 23346666555566677788888888887764
No 404
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=61.30 E-value=57 Score=40.23 Aligned_cols=106 Identities=13% Similarity=0.057 Sum_probs=61.3
Q ss_pred CeeEEEeCCCCC-EEEEEecCCeEEEEECCCC---ceEEEEe-----c----CCCCeEEEEEccC---CCcEEEEEeC--
Q 048801 547 GVNMIVWSLDNR-FVLAAIMDCRICVWNAVDG---SLVHSLT-----G----HSASSYVLDVHPF---NPRIAMSAGY-- 608 (1715)
Q Consensus 547 ~VtslafSPDG~-~LaTgs~DGtI~IWDl~sg---~~l~tL~-----g----H~~~V~sLafSP~---dg~lLaSgs~-- 608 (1715)
....|+|.|||. .|+++...|.|++++.... ..+..+. + .......|+|+|+ ++.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 356899999996 4555677899999975322 1222221 1 1456789999994 3455444332
Q ss_pred C----------CcEEEEECCC----------CceEEEEEc--ccceEEEEEEcCCCCEEEEEeCCC
Q 048801 609 D----------GRTIVWDIWE----------GTPIRIYEI--GRFKLVDGKFSPDGTSIVLSDDVG 652 (1715)
Q Consensus 609 D----------GtI~VWDl~t----------gk~l~tl~~--h~~~V~svafSPDG~~LAsgs~DG 652 (1715)
+ ..|.-|.+.. .+.+..+.. ..-....|+|.|||.+.++.++.+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 1344466542 123333321 111256899999998777666543
No 405
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=65.04 E-value=1.8 Score=40.45 Aligned_cols=54 Identities=11% Similarity=0.287 Sum_probs=41.5
Q ss_pred HhCCCCCCcceEEeecccCCCCCceEEEEEEEcccCCCCCCCCCCceeEEEECCCCCCCCCCCccCCC
Q 048801 1532 ISRNWTHRDKCQIWWRNANGEGGTWWKGRITKSQAKSEEFPNSPWDRYMVEYKTGDSHLHSPWEMHDP 1599 (1715)
Q Consensus 1532 ~~~~w~~g~rf~~~~~~e~~~~~~w~~GtI~~~~~~~p~~P~S~w~~l~V~wd~~~~~~~SpWeie~~ 1599 (1715)
|-..|++||+|.-.|. .++||.++|+++... ..|.|.++++..+.+.+=.|.|.
T Consensus 3 ~~~~~kvGd~clAkws-----Dg~wY~A~I~~v~~~---------~~y~V~F~DGn~E~V~~s~LrPl 56 (81)
T 2ldm_A 3 MSSEFQINEQVLASWS-----DSRFYPAKVTAVNKD---------GTYTVKFYDGVVQTVKHIHVKAF 56 (81)
Confidence 4568999999999885 346999999998531 26899998777777776666554
No 406
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=56.33 E-value=86 Score=42.33 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=33.6
Q ss_pred CeEEEEECCCCCEEEEEeCCCeeEEEECCCCCceEEEe
Q 048801 287 DITDLAVSSNNTLVASASNDFVIRVWRLPDGLPISVLR 324 (1715)
Q Consensus 287 ~VtsLafSpDg~lLASGS~DGtIrVWDl~tg~~l~~L~ 324 (1715)
.|.+++..++..+|++-+.|+++|||++.++.++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 57788888888999999999999999999999887753
No 407
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=56.19 E-value=84 Score=42.43 Aligned_cols=39 Identities=8% Similarity=0.186 Sum_probs=34.3
Q ss_pred CCeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe
Q 048801 546 RGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT 584 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~ 584 (1715)
..+.+++..++..+|++-+.|++++||++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 357778888899999999999999999999999988764
No 408
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=52.72 E-value=19 Score=33.26 Aligned_cols=55 Identities=9% Similarity=0.272 Sum_probs=41.3
Q ss_pred CCCCCCcceEEeecccCCCCCceEEEEEEEcccCCCCCCCCCCceeEEEECC-CCCCCCCCCccCCCC
Q 048801 1534 RNWTHRDKCQIWWRNANGEGGTWWKGRITKSQAKSEEFPNSPWDRYMVEYKT-GDSHLHSPWEMHDPN 1600 (1715)
Q Consensus 1534 ~~w~~g~rf~~~~~~e~~~~~~w~~GtI~~~~~~~p~~P~S~w~~l~V~wd~-~~~~~~SpWeie~~~ 1600 (1715)
..|++|+.|...|.. .+.||.++|.++.... ..+.|.+.. ++.+.|..=+|.+..
T Consensus 16 ~~~kvGd~C~A~ys~----Dg~wYRA~I~~i~~~~--------~~~~V~fvDYGN~e~V~~~~Lr~l~ 71 (77)
T 3pnw_C 16 KMWKPGDECFALYWE----DNKFYRAEVEALHSSG--------MTAVVKFIDYGNYEEVLLSNIKPIQ 71 (77)
T ss_dssp TTCCTTCEEEEEETT----TTEEEEEEEEEECTTS--------SEEEEEETTTCCEEEEEGGGEECC-
T ss_pred CCCCcCCEEEEEECC----CCCEEEEEEEEEeCCC--------CEEEEEEEcCCCeEEEeHHHeEECC
Confidence 479999999997622 3579999999986432 468899988 888887766665533
No 409
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=52.68 E-value=3e+02 Score=31.21 Aligned_cols=163 Identities=10% Similarity=-0.032 Sum_probs=89.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEe---CCCCcEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCeeEEEECCCCC-
Q 048801 244 DAVYCAIFDRSGRFVITGSDDRLVKIWS---METAFCLASCRGHEGDITDLAVSS-NNTLVASASNDFVIRVWRLPDGL- 318 (1715)
Q Consensus 244 ~~Vt~VafSpDG~~LaTGS~DGtIrIWD---l~tgk~l~tL~gHs~~VtsLafSp-Dg~lLASGS~DGtIrVWDl~tg~- 318 (1715)
+.|.++.......+|+.-+..|.++--. +..+.....+. ....|..+.... +..+++.++.+|.|+-..+..-.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 4555555555555666666777766433 32221111133 345666664421 56799999999999998875432
Q ss_pred ---ceE--EEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCC
Q 048801 319 ---PIS--VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSN 393 (1715)
Q Consensus 319 ---~l~--~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~ 393 (1715)
-+. .+. ....+..+....... .|+..+..|.+..+....-. .. .....|.. ...
T Consensus 103 ~~~G~~~i~lk-egD~l~~~~~~~~~~---~ill~T~~G~~~r~~~~eip---~~-----gR~a~Gv~---------~i~ 161 (276)
T 3no0_A 103 KAQGMPIIKLT-EGDEVVSIASSVDET---HILLFTKKGRVARFSVREVP---PS-----TPGARGVQ---------GIK 161 (276)
T ss_dssp CSTTEECSCCC-TTCCEEEEEECCSSC---EEEEEETTSEEEEEEGGGSC---BC-----CTTCCCEE---------CCC
T ss_pred hcCCeEEEecC-CCCEEEEEEEeCCCC---EEEEEECCCEEEEEEhhhCC---Cc-----CCCCCCEE---------EEc
Confidence 111 122 234555555554443 67777888888777654211 10 00001110 011
Q ss_pred CCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCC
Q 048801 394 GLQSHQILCCAYNANGTVFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 394 ~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t 428 (1715)
......|..+....++..++..+..|.++...+..
T Consensus 162 L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 162 LEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp CCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred cCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 12235566665555667888888999999888754
No 410
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=49.24 E-value=19 Score=36.59 Aligned_cols=82 Identities=13% Similarity=0.234 Sum_probs=48.3
Q ss_pred CceEEEecCCCCCCCceEEehhhHH----HHHhCCCCCCcceEEeecccCCCCCceEEEEEEEcccCCCCCCCCCCceeE
Q 048801 1505 GKAFKLTLPELRDFPDFVVEKTLYD----AAISRNWTHRDKCQIWWRNANGEGGTWWKGRITKSQAKSEEFPNSPWDRYM 1580 (1715)
Q Consensus 1505 ~~~F~v~y~~~~~~~dFlV~~~~y~----~a~~~~w~~g~rf~~~~~~e~~~~~~w~~GtI~~~~~~~p~~P~S~w~~l~ 1580 (1715)
...++|.|.... .++-.|+.+..+ .+....+++||...++++..+..+-.||.|+|..++. ..|.
T Consensus 27 ~d~~~V~f~n~w-~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg----------~f~~ 95 (128)
T 3h8z_A 27 EDSVTIFFENNW-QSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCGWWLARVRMMKG----------DFYV 95 (128)
T ss_dssp SSEEEEEETTCT-TCCEEEEGGGEECCCCC----CCCTTCEEEEEECC---CCCEEEEEEEEEEET----------TEEE
T ss_pred CCcEEEEEcccc-CcceEechhhEEcCCCcccccCCCCCCEEEEEecCCCCCcCccEEEEEEEeeC----------CEEE
Confidence 455777776532 235566655554 2334689999999999987655566799999999872 2788
Q ss_pred EE---ECCCCCCCCCCCccC
Q 048801 1581 VE---YKTGDSHLHSPWEMH 1597 (1715)
Q Consensus 1581 V~---wd~~~~~~~SpWeie 1597 (1715)
|. ||+.-.+.|.+=.|-
T Consensus 96 V~y~~~~~~~~EiV~~~rlR 115 (128)
T 3h8z_A 96 IEYAACDATYNEIVTLERLR 115 (128)
T ss_dssp EEETTC----CEEECGGGEE
T ss_pred EEEcCCCCCcceEEehhheE
Confidence 99 454444444443443
No 411
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=48.38 E-value=3.9e+02 Score=31.28 Aligned_cols=58 Identities=10% Similarity=0.052 Sum_probs=30.9
Q ss_pred CeeEEEeCCC-CCEEEEEecCCeEEEEECCCCceEEEEec-C-C---CCeEEEEEccCCCcEEEEE
Q 048801 547 GVNMIVWSLD-NRFVLAAIMDCRICVWNAVDGSLVHSLTG-H-S---ASSYVLDVHPFNPRIAMSA 606 (1715)
Q Consensus 547 ~VtslafSPD-G~~LaTgs~DGtI~IWDl~sg~~l~tL~g-H-~---~~V~sLafSP~dg~lLaSg 606 (1715)
.+.+|++.|. ...|+++...+ |...+ ..|+.-..+.. - . ..+.+++++|.+...|..+
T Consensus 233 ~~~~i~~~~~~~~~l~vg~~~g-l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 233 DPHCVVQHPAAPDILYQQNHCG-IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp CEEEEEECSSSTTEEEEEETTE-EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred ceeEEEECCCCCCEEEEEcCCe-EEEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 5888999986 35666666544 44443 23333333221 1 1 3457788887544433333
No 412
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=47.61 E-value=51 Score=41.60 Aligned_cols=106 Identities=14% Similarity=0.116 Sum_probs=71.4
Q ss_pred cCCCCCeeEEEeCCCCCEEEEEe-cCCeEEEEECCC------Cce-------EEEEecCCCCeEEEEEccCCCcEEEEEe
Q 048801 542 LPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAVD------GSL-------VHSLTGHSASSYVLDVHPFNPRIAMSAG 607 (1715)
Q Consensus 542 ~~h~~~VtslafSPDG~~LaTgs-~DGtI~IWDl~s------g~~-------l~tL~gH~~~V~sLafSP~dg~lLaSgs 607 (1715)
...+.....+.++|||+++++++ .+.+|.|+++.. +++ +.... -.-.....+|.+ ++....|--
T Consensus 319 iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlf 396 (638)
T 3sbq_A 319 VPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLF 396 (638)
T ss_dssp EEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEET
T ss_pred EeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeee
Confidence 34455667789999999998766 477899999874 111 22222 233456789988 556666667
Q ss_pred CCCcEEEEECCCC----------ceEEEEEcccceEEEEE------EcCCCCEEEEEeC
Q 048801 608 YDGRTIVWDIWEG----------TPIRIYEIGRFKLVDGK------FSPDGTSIVLSDD 650 (1715)
Q Consensus 608 ~DGtI~VWDl~tg----------k~l~tl~~h~~~V~sva------fSPDG~~LAsgs~ 650 (1715)
-|..|.-|++... ..+..+..|-.+ -.+. -.|||++|++...
T Consensus 397 idSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 397 IDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEES
T ss_pred ecceEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecc
Confidence 8999999998653 456666655433 2232 3689999998743
No 413
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=37.71 E-value=7.9e+02 Score=31.78 Aligned_cols=72 Identities=11% Similarity=0.067 Sum_probs=45.4
Q ss_pred CCeeEEEeCCCCCEEEEEecCCe--EEEEECCCCc-eEEE-EecC-CCCeEEEEEccCCCcEEEEEeC---CCcEEEEEC
Q 048801 546 RGVNMIVWSLDNRFVLAAIMDCR--ICVWNAVDGS-LVHS-LTGH-SASSYVLDVHPFNPRIAMSAGY---DGRTIVWDI 617 (1715)
Q Consensus 546 ~~VtslafSPDG~~LaTgs~DGt--I~IWDl~sg~-~l~t-L~gH-~~~V~sLafSP~dg~lLaSgs~---DGtI~VWDl 617 (1715)
..+..+.|..+ .++++...++. |.++++.++. .+.. +.-. .+.+..+.+.++++.++++.+. -+.+..+|+
T Consensus 350 ~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~ 428 (711)
T 4hvt_A 350 EVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVK 428 (711)
T ss_dssp EEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred CeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeC
Confidence 35778888865 56777777764 6777776664 2333 3211 3456666677766667766553 367888887
Q ss_pred C
Q 048801 618 W 618 (1715)
Q Consensus 618 ~ 618 (1715)
.
T Consensus 429 ~ 429 (711)
T 4hvt_A 429 T 429 (711)
T ss_dssp T
T ss_pred C
Confidence 6
No 414
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=35.47 E-value=5.6e+02 Score=29.37 Aligned_cols=161 Identities=8% Similarity=0.052 Sum_probs=86.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCC---------CCcEEE---EecCCCCCeEEEEE-C--CCCCEEEEEeCCCeeE
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSME---------TAFCLA---SCRGHEGDITDLAV-S--SNNTLVASASNDFVIR 310 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~---------tgk~l~---tL~gHs~~VtsLaf-S--pDg~lLASGS~DGtIr 310 (1715)
+..+........|+..+..|.+.-.... .|..+. .+. ....|.++.. . .++.+|+.++..|.++
T Consensus 44 l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~K 122 (307)
T 1zi0_A 44 IDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVK 122 (307)
T ss_dssp EEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEE
T ss_pred EEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEE
Confidence 3333333444566666677776555432 122211 122 2335655543 2 3566889999999999
Q ss_pred EEECCCCC-------ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCC
Q 048801 311 VWRLPDGL-------PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNV 383 (1715)
Q Consensus 311 VWDl~tg~-------~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~ 383 (1715)
-..+..-. ....+..+ +.+..+....... .|+..+.+|.+..+....-. .. .....|.
T Consensus 123 rt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~---~i~l~T~~G~~irf~~~~v~---~~-----gr~a~Gv--- 187 (307)
T 1zi0_A 123 KTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGED---EVMLFSAEGKVVRFKESSVR---AM-----GCNTTGV--- 187 (307)
T ss_dssp EEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTC---EEEEEETTSEEEEEEGGGSC---BC-----CTTCCCE---
T ss_pred EEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCC---EEEEECCCCcEEEEEHHHcC---cc-----CCCCCCe---
Confidence 98774221 11123333 5555555544433 57777778888777664311 10 0000011
Q ss_pred CCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCC
Q 048801 384 PSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 384 ~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t 428 (1715)
..........|.++....++..|++.+..|.++-.++..
T Consensus 188 ------~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 188 ------RGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp ------ECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred ------EeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 111112345566666555566788888999998887753
No 415
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=35.12 E-value=6.3e+02 Score=29.90 Aligned_cols=157 Identities=15% Similarity=0.081 Sum_probs=87.4
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCC---------CcEEEEecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEE---CCC--
Q 048801 251 FDRSGRFVITGSDDRLVKIWSMET---------AFCLASCRGHEGDITDLAVSSNNTLVASASNDFVIRVWR---LPD-- 316 (1715)
Q Consensus 251 fSpDG~~LaTGS~DGtIrIWDl~t---------gk~l~tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWD---l~t-- 316 (1715)
+-++..++++.+.+|.|+--.+.+ |.....++ ....+..+........|+..+..|.++-.. +..
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 346778999999999999875532 22333444 345566666555666777777888766554 332
Q ss_pred ----CCceE---EEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCCCC
Q 048801 317 ----GLPIS---VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGP 389 (1715)
Q Consensus 317 ----g~~l~---~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~ 389 (1715)
|.++. .|. ....|.++....+.....+|+.++..|.++...+..-..... .|. .
T Consensus 82 r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~----------~G~--------~ 142 (370)
T 3l6v_A 82 SNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLA----------RGK--------I 142 (370)
T ss_dssp TTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCT----------TCE--------E
T ss_pred cccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccC----------Cce--------E
Confidence 22111 122 234555554432110011789999999999887653221100 010 0
Q ss_pred CCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCC
Q 048801 390 SSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 390 ~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t 428 (1715)
.... .....+..+........|+..+..|.+..+....
T Consensus 143 ai~L-~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 143 AINL-DEGDALVGVALTDGDRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp SSCC-CTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGG
T ss_pred EEEe-CCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccc
Confidence 0011 1133455555544556677788889888887654
No 416
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=33.72 E-value=6.6e+02 Score=29.71 Aligned_cols=109 Identities=9% Similarity=-0.105 Sum_probs=56.2
Q ss_pred CeeEEEeCCCCCEEEEEecCCeEEEEECCCCc-----------eEEEEecCCCCeEEEEEccCCCcEEEEEeCCCcEEEE
Q 048801 547 GVNMIVWSLDNRFVLAAIMDCRICVWNAVDGS-----------LVHSLTGHSASSYVLDVHPFNPRIAMSAGYDGRTIVW 615 (1715)
Q Consensus 547 ~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~-----------~l~tL~gH~~~V~sLafSP~dg~lLaSgs~DGtI~VW 615 (1715)
.|..|+.... ..++.-..++.|+.|-..... ...........|..|+. +....+.-..||.|+.|
T Consensus 243 ~v~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~---G~~ht~alt~~G~v~~w 318 (423)
T 3mvd_K 243 PFEAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG---GQHHTVILTTDLKCSVV 318 (423)
T ss_dssp CEEEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE---CSSEEEEEETTCCEEEE
T ss_pred cEEEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc---ccCeEEEEeCCCcEEEE
Confidence 4555554322 223333578889888653310 11111111345666665 34444555789999999
Q ss_pred ECCCC---------ceEEE---EEcccceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 616 DIWEG---------TPIRI---YEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 616 Dl~tg---------k~l~t---l~~h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
-.... ..... +......|..++... .+.++-..+|.|+.|-...
T Consensus 319 G~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~--~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 319 GRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE--VCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp ECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEET--TEEEEEETTSCEEEEECCT
T ss_pred ECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCC--CeEEEEcCCCCEEEECCCC
Confidence 65321 11111 111122466665543 3344447889999998654
No 417
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=32.41 E-value=6.7e+02 Score=29.39 Aligned_cols=110 Identities=13% Similarity=0.123 Sum_probs=59.5
Q ss_pred CeeEEEeCCCCCEEEEEecCCeEEEEECCCC-c---------eE-EEEec-CCCCeEEEEEccCCCcEEEEEeCCCcEEE
Q 048801 547 GVNMIVWSLDNRFVLAAIMDCRICVWNAVDG-S---------LV-HSLTG-HSASSYVLDVHPFNPRIAMSAGYDGRTIV 614 (1715)
Q Consensus 547 ~VtslafSPDG~~LaTgs~DGtI~IWDl~sg-~---------~l-~tL~g-H~~~V~sLafSP~dg~lLaSgs~DGtI~V 614 (1715)
.|..++........++-..||.|+.|-.... + .. ..+.. ....|..|+.. ....+.-..||.|+.
T Consensus 212 ~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G---~~hs~alt~~G~v~~ 288 (389)
T 3kci_A 212 RVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG---SQFSVALTKSGAVYT 288 (389)
T ss_dssp CEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE---TTEEEEEETTSCEEE
T ss_pred eEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC---CCEEEEEeCCCeEEE
Confidence 4666665543456666778999999975431 1 11 11111 12246666653 344444578999999
Q ss_pred EECCCC--------ceEEEEE---c-ccceEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 048801 615 WDIWEG--------TPIRIYE---I-GRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTGQ 661 (1715)
Q Consensus 615 WDl~tg--------k~l~tl~---~-h~~~V~svafSPDG~~LAsgs~DG~I~IWdl~t 661 (1715)
|-.... ....... . ....|..++.. ....++...+|.|+.|....
T Consensus 289 wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 289 WGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEEECCT
T ss_pred EeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEeeCCC
Confidence 975321 1111111 1 11235555443 34455567889999998753
No 418
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=31.41 E-value=6.7e+02 Score=29.03 Aligned_cols=161 Identities=9% Similarity=0.077 Sum_probs=84.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCC---------CCcEEE---EecCCCCCeEEE-EECC--CCCEEEEEeCCCeeE
Q 048801 246 VYCAIFDRSGRFVITGSDDRLVKIWSME---------TAFCLA---SCRGHEGDITDL-AVSS--NNTLVASASNDFVIR 310 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~DGtIrIWDl~---------tgk~l~---tL~gHs~~VtsL-afSp--Dg~lLASGS~DGtIr 310 (1715)
+..+........|+..+..|.+.-.... .|..+. .|. ....|.++ .+.. ++.+|+.++..|.++
T Consensus 41 l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iK 119 (323)
T 1wp5_A 41 LLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVK 119 (323)
T ss_dssp EEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEE
T ss_pred EEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEE
Confidence 3333344444566666677776555432 122111 122 22345554 4432 366899999999999
Q ss_pred EEECCCC------CceE--EEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccC
Q 048801 311 VWRLPDG------LPIS--VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSN 382 (1715)
Q Consensus 311 VWDl~tg------~~l~--~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~ 382 (1715)
-..+..- .-+. .+.. .+.+..+....... .|+..+.+|.+..+....-. ... ....|.
T Consensus 120 rt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~---~i~l~T~~G~~irf~~~ev~---~~g-----R~a~GV-- 185 (323)
T 1wp5_A 120 KTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMN---ELFLVTHNGYALWFDESEVS---IVG-----VRAAGV-- 185 (323)
T ss_dssp EEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCS---EEEEEETTSEEEEEEGGGSC---BCC-----SSCCCE--
T ss_pred EeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCC---EEEEEeCCCcEEEEEHHHCc---ccC-----CCCcCE--
Confidence 9887421 1122 2222 24555555544333 57777888888888765311 100 000011
Q ss_pred CCCCCCCCCCCCCCCcceeEEEEccCCC-eEEEecCCCeEEEEeCCC
Q 048801 383 VPSNNGPSSSNGLQSHQILCCAYNANGT-VFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 383 ~~~~~~~~~~~~~h~~~VtslafSpdG~-~LatGs~DG~IrVWDl~t 428 (1715)
..........|.++...+++. .|++.+..|..+..++..
T Consensus 186 -------~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 186 -------KGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp -------ECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred -------EEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 111112244566665444444 677888889888877754
No 419
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=30.83 E-value=7.1e+02 Score=29.18 Aligned_cols=123 Identities=16% Similarity=0.192 Sum_probs=64.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCeeEEEECCCC------C--ce---EEEeC-CCCCeEEEEecCCCCcceEEEEecCCCcE
Q 048801 287 DITDLAVSSNNTLVASASNDFVIRVWRLPDG------L--PI---SVLRG-HTGAVTAIAFSPRPSAIYQLLSSSDDGTC 354 (1715)
Q Consensus 287 ~VtsLafSpDg~lLASGS~DGtIrVWDl~tg------~--~l---~~L~g-H~~~VtsLafSPdg~~~~~LaSgS~DGtV 354 (1715)
.+..++++......+.-..||.|+.|-.... . .. ..+.. ....|..|+.... ..+....+|.|
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~-----hs~alt~~G~v 180 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGA-----HSACVTAAGDL 180 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS-----EEEEEETTSCE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcC-----eEEEEeCCCeE
Confidence 4566777776777777788999999965321 0 11 11111 1225666666543 34555678999
Q ss_pred EEEecCCCCCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCC
Q 048801 355 RIWDARYSQYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSAC 427 (1715)
Q Consensus 355 rIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~ 427 (1715)
..|-....-.+-. ..... ...+..........|..++......+.++-..+|.|..|-..
T Consensus 181 ~~wG~n~~GqLG~---~~~~~----------~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n 240 (389)
T 3kci_A 181 YTWGKGRYGRLGH---SDSED----------QLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDG 240 (389)
T ss_dssp EEEECCGGGTTCS---SSCCC----------EEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECC
T ss_pred EEeCCCCCCCcCC---CCCcc----------cccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCC
Confidence 9996543111100 00000 000000111123346666665433455556678999999654
No 420
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=30.73 E-value=6.6e+02 Score=28.80 Aligned_cols=203 Identities=11% Similarity=-0.017 Sum_probs=105.5
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCcE-------EE--EecCCCCCeEEEEECCCCCEEEEEeCCCeeEEEECC---CC--
Q 048801 252 DRSGRFVITGSDDRLVKIWSMETAFC-------LA--SCRGHEGDITDLAVSSNNTLVASASNDFVIRVWRLP---DG-- 317 (1715)
Q Consensus 252 SpDG~~LaTGS~DGtIrIWDl~tgk~-------l~--tL~gHs~~VtsLafSpDg~lLASGS~DGtIrVWDl~---tg-- 317 (1715)
-++..++++.+.+|.|+--.+..-.. +. .++. ...+..+........|+..+..|.++-.... ..
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 35667889999999999887653321 11 1232 2344455445455677777888887666542 21
Q ss_pred ----Cce---EEEeCCCCCeEEEEecC---CCCcceEEEEecCCCcEEEEecCCCCCcceecCCCCCCCccCccCCCCCC
Q 048801 318 ----LPI---SVLRGHTGAVTAIAFSP---RPSAIYQLLSSSDDGTCRIWDARYSQYSPRIYLPKPPDAITGKSNVPSNN 387 (1715)
Q Consensus 318 ----~~l---~~L~gH~~~VtsLafSP---dg~~~~~LaSgS~DGtVrIWDl~tg~~l~~i~~~~~~~~i~g~~~~~~~~ 387 (1715)
.++ ..+. ....|.++...+ +.. +|+..+..|.++...+..-.... ..|.
T Consensus 84 ~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~---~ll~~T~~G~~kr~~l~~~~~~r----------~~G~------- 142 (312)
T 1suu_A 84 ASKGQNISELINLG-DQEEILTIKNSKDLTDDA---YLLLTTASGKIARFESTDFKAVK----------SRGV------- 142 (312)
T ss_dssp ----CBGGGTSCCC-TTCCEEEEEEESCCCTTC---EEEEEETTSEEEEEEGGGGCC--------------CE-------
T ss_pred cCCCcChhhccCCC-CCCEEEEEEEeccCCCCC---EEEEEeCCCeEEEEEHHHhhccC----------CCcE-------
Confidence 110 1122 223455554433 223 67888999999988765321100 0010
Q ss_pred CCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeeeeecCCCCCeeEEEEccCcccccccc
Q 048801 388 GPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELDVLSGHENDVNYVQFSGCAVASRSAM 467 (1715)
Q Consensus 388 ~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~~l~gH~~~V~sLafspdg~as~~~~ 467 (1715)
..........+..+....++..++..+.+|.+..+....-..............+.. .+.|.++.....
T Consensus 143 --~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~-------- 211 (312)
T 1suu_A 143 --IVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKE-------- 211 (312)
T ss_dssp --ECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTT--------
T ss_pred --EEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECC--------
Confidence 000111234455555555556778888899998888754211111111111222222 234444433221
Q ss_pred cccccccccccccCCcccCceEEEEcCCCeEEEEecCC
Q 048801 468 SDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 505 (1715)
Q Consensus 468 ~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t 505 (1715)
...+++.+..|.++...+..
T Consensus 212 ------------------~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 212 ------------------NPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp ------------------CSEEEEEETTSEEEEEEGGG
T ss_pred ------------------CCeEEEEECCCceEEEEHHH
Confidence 24688888999988887753
No 421
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=27.94 E-value=1.1e+03 Score=30.43 Aligned_cols=96 Identities=7% Similarity=0.043 Sum_probs=57.2
Q ss_pred cCCeEEEEECCCCc-------eEEE-Eec-CCCCeEEEEEccCCCcEEEEEeCCCc--EEEEECCCCc-eEEE-EEcc-c
Q 048801 565 MDCRICVWNAVDGS-------LVHS-LTG-HSASSYVLDVHPFNPRIAMSAGYDGR--TIVWDIWEGT-PIRI-YEIG-R 630 (1715)
Q Consensus 565 ~DGtI~IWDl~sg~-------~l~t-L~g-H~~~V~sLafSP~dg~lLaSgs~DGt--I~VWDl~tgk-~l~t-l~~h-~ 630 (1715)
..+.|.+.++.++. .... +.. ....+..+.|.. +.++++...+|. |.++++.+|. .+.. +... .
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~ 395 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTK--DRVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQ 395 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECS--SCEEEEEEETTEEEEEEECEETTEECCCEEECCCST
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEEC--CEEEEEEEECCEEEEEEEECCCCceEEEeccCCCCC
Confidence 46778899987642 2233 322 233566777765 478888877874 6677776664 2333 3221 2
Q ss_pred ceEEEEEEcCCCCEEEEE-e---CCCeEEEEECCCCc
Q 048801 631 FKLVDGKFSPDGTSIVLS-D---DVGQIYLLNTGQGE 663 (1715)
Q Consensus 631 ~~V~svafSPDG~~LAsg-s---~DG~I~IWdl~tGe 663 (1715)
+.+..+.+++++..++.. + .-+.++.+++. ++
T Consensus 396 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~ 431 (711)
T 4hvt_A 396 NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HE 431 (711)
T ss_dssp TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SC
T ss_pred eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-Cc
Confidence 456666777887655533 2 34678888876 53
No 422
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=27.78 E-value=7.3e+02 Score=28.35 Aligned_cols=213 Identities=13% Similarity=0.070 Sum_probs=100.3
Q ss_pred CCCCEEEEEeCCCeeEEEECCCCCceE---------EEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecCCCCCc
Q 048801 295 SNNTLVASASNDFVIRVWRLPDGLPIS---------VLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDARYSQYS 365 (1715)
Q Consensus 295 pDg~lLASGS~DGtIrVWDl~tg~~l~---------~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~tg~~l 365 (1715)
|+..++++.+.+|.|+--.+.+-.... .+.. ...+..+..+.... .|+..+..|.+.-+....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~---~ll~fT~~G~~~~~~~~e---- 72 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHD---HILCFSSRGRVYSMKVYQ---- 72 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTC---EEEEEETTSEEEEEEGGG----
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCC---EEEEEECCCEEEEEEhhH----
Confidence 345678888999999877665422111 1221 22333333333333 456666667655544321
Q ss_pred ceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEc---cCCCeEEEecCCCeEEEEeCCCCCccCCCCCceeee
Q 048801 366 PRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYN---ANGTVFVTGSSDTFARVWSACKSSVEDSEQPIHELD 442 (1715)
Q Consensus 366 ~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafS---pdG~~LatGs~DG~IrVWDl~t~~~~~~~~~~~~l~ 442 (1715)
++.......|.... ..........|..+... .++.+++..+..|.++-..+..-.... .......
T Consensus 73 ----lp~~~~~a~G~~i~------~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~--r~G~~~i 140 (307)
T 1zi0_A 73 ----LPEATRGARGRPIV------NLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLR--TAGKVAI 140 (307)
T ss_dssp ----SCCCCSSSCCEEGG------GTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCC--TTCEESS
T ss_pred ----CcCCCCCCCCeEhh------hccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccc--cCCeEEE
Confidence 11110000111000 00011123345555432 345678888999999988775321100 1111112
Q ss_pred eecCCCCCeeEEEEccCcccccccccccccccccccccCCcccCceEEEEcCCCeEEEEecCCCccCccccccccccccc
Q 048801 443 VLSGHENDVNYVQFSGCAVASRSAMSDAFKEENVPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLK 522 (1715)
Q Consensus 443 ~l~gH~~~V~sLafspdg~as~~~~~~~~~~~~~~~~~~s~~~~~~LaSgS~DGsIrIWDl~t~~~~~~~~~~~~~~~l~ 522 (1715)
.+..+ +.+..+..... .+.|+..+.+|.+..+....-...+..
T Consensus 141 ~l~~~-d~lv~~~~~~~--------------------------~~~i~l~T~~G~~irf~~~~v~~~gr~---------- 183 (307)
T 1zi0_A 141 KLVDG-DELIGVDLTSG--------------------------EDEVMLFSAEGKVVRFKESSVRAMGCN---------- 183 (307)
T ss_dssp CCCTT-CCEEEEEEECT--------------------------TCEEEEEETTSEEEEEEGGGSCBCCTT----------
T ss_pred EECCC-CEEEEEEEeCC--------------------------CCEEEEECCCCcEEEEEHHHcCccCCC----------
Confidence 23333 44444433322 256788888998888876531111110
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCeeEEEeCCCCCEEEEEecCCeEEEEECC
Q 048801 523 VPPPPLPPQPPRGGPRQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAV 575 (1715)
Q Consensus 523 ~~~~~~~~~~~~g~~~~~l~~h~~~VtslafSPDG~~LaTgs~DGtI~IWDl~ 575 (1715)
..+.....+. ....|.++....++..|++.+..|.++..++.
T Consensus 184 ----------a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 184 ----------TTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp ----------CCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred ----------CCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 0011111121 23345555554556678888999998888763
No 423
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=25.78 E-value=1.4e+02 Score=38.06 Aligned_cols=58 Identities=17% Similarity=0.119 Sum_probs=42.3
Q ss_pred eEEEEEcCCCCEEEEEeCC------------CcEEEEeCCCCcEEEEecCC-CCCeEEEEECCCCCEEEEE
Q 048801 246 VYCAIFDRSGRFVITGSDD------------RLVKIWSMETAFCLASCRGH-EGDITDLAVSSNNTLVASA 303 (1715)
Q Consensus 246 Vt~VafSpDG~~LaTGS~D------------GtIrIWDl~tgk~l~tL~gH-s~~VtsLafSpDg~lLASG 303 (1715)
.--|+|++.|++++.-..+ ..+.+.+..+++..+.+.++ ...++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 3568899999866654322 23566677788887777765 4589999999999888765
No 424
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=24.77 E-value=9.2e+02 Score=28.48 Aligned_cols=113 Identities=11% Similarity=0.048 Sum_probs=63.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC---------CCcEEE---EecCCCCCeEEEEE-C--CCCCEEEEEeCCC
Q 048801 243 RDAVYCAIFDRSGRFVITGSDDRLVKIWSME---------TAFCLA---SCRGHEGDITDLAV-S--SNNTLVASASNDF 307 (1715)
Q Consensus 243 ~~~Vt~VafSpDG~~LaTGS~DGtIrIWDl~---------tgk~l~---tL~gHs~~VtsLaf-S--pDg~lLASGS~DG 307 (1715)
.+.+..+........|+..+..|.+.-+... .|..+. .|. ....|.++.. . .++.+|+.++..|
T Consensus 45 ~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G 123 (370)
T 3l6v_A 45 EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNG 123 (370)
T ss_dssp CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTS
T ss_pred CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCC
Confidence 3455555555555667767777876655432 222211 122 2345555543 3 2456999999999
Q ss_pred eeEEEECCCCC-------ceEEEeCCCCCeEEEEecCCCCcceEEEEecCCCcEEEEecC
Q 048801 308 VIRVWRLPDGL-------PISVLRGHTGAVTAIAFSPRPSAIYQLLSSSDDGTCRIWDAR 360 (1715)
Q Consensus 308 tIrVWDl~tg~-------~l~~L~gH~~~VtsLafSPdg~~~~~LaSgS~DGtVrIWDl~ 360 (1715)
.++...+.... ....+.. .+.+..+....... .|+..+..|.+..+...
T Consensus 124 ~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~~---~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 124 TVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGDR---DVLLFASNGKTVRFGES 179 (370)
T ss_dssp EEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSCC---EEEEEETTSEEEEEEGG
T ss_pred eEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCCc---eEEEEeCCCeEEEEEcc
Confidence 99998864321 1112332 34455555544333 56777778887777654
No 425
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=23.92 E-value=1.2e+02 Score=41.91 Aligned_cols=38 Identities=8% Similarity=0.188 Sum_probs=32.8
Q ss_pred CeeEEEeCCCCCEEEEEecCCeEEEEECCCCceEEEEe
Q 048801 547 GVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLT 584 (1715)
Q Consensus 547 ~VtslafSPDG~~LaTgs~DGtI~IWDl~sg~~l~tL~ 584 (1715)
.+.+++..++..+|++-+.|++++||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45566777888999999999999999999999988764
No 426
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=21.67 E-value=1.1e+02 Score=28.42 Aligned_cols=48 Identities=13% Similarity=0.121 Sum_probs=33.2
Q ss_pred CCCCcceEEeecccCC-CCCceEEEEEEEcccCCCCCCCCCCceeEEEE-CCCCCCCCCC
Q 048801 1536 WTHRDKCQIWWRNANG-EGGTWWKGRITKSQAKSEEFPNSPWDRYMVEY-KTGDSHLHSP 1593 (1715)
Q Consensus 1536 w~~g~rf~~~~~~e~~-~~~~w~~GtI~~~~~~~p~~P~S~w~~l~V~w-d~~~~~~~Sp 1593 (1715)
=.+|||+-+ .+. .+..-..|.|++|.-.+-. - =|.|+| |.+..-.+.|
T Consensus 6 A~vGDrlvv----~g~~vg~~~R~GeIvEV~g~dG~---P---PY~VRw~ddGHe~lv~P 55 (83)
T 2a7y_A 6 AKVGDYLVV----KGTTTERHDQHAEIIEVRSADGS---P---PYVVRWLVNGHETTVYP 55 (83)
T ss_dssp CCTTEEEEE----SCTTTSCCEEEEEEEECSCSSSC---S---CEEEEETTTTEEEEECC
T ss_pred ccCCCEEEE----ecCcCCCCCcEEEEEEEECCCCC---C---CEEEEecCCCcEEEEec
Confidence 357999988 223 5667899999999654331 1 278999 7776666655
No 427
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=21.16 E-value=9.1e+02 Score=27.12 Aligned_cols=118 Identities=9% Similarity=0.005 Sum_probs=61.3
Q ss_pred CeEEEEECCCCCEEEEEeCCCeeEE---EECCCCCceEEEeCCCCCeEEEEecC-CCCcceEEEEecCCCcEEEEecCCC
Q 048801 287 DITDLAVSSNNTLVASASNDFVIRV---WRLPDGLPISVLRGHTGAVTAIAFSP-RPSAIYQLLSSSDDGTCRIWDARYS 362 (1715)
Q Consensus 287 ~VtsLafSpDg~lLASGS~DGtIrV---WDl~tg~~l~~L~gH~~~VtsLafSP-dg~~~~~LaSgS~DGtVrIWDl~tg 362 (1715)
.+..+.......+|+.-+..|.++- |++..+.....+. ....|.++.... +.. +++..+.+|.++...+..-
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~---~~v~~T~~G~iKr~~l~~~ 100 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGN---RLLLATKKGYVKKIPLAEF 100 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCS---EEEEEETTSEEEEEEGGGT
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCC---EEEEEeCCCEEEEEEHHHh
Confidence 4444444444445555556666543 3332221100132 344565554321 233 7889999999999876543
Q ss_pred CCcceecCCCCCCCccCccCCCCCCCCCCCCCCCCcceeEEEEccCCCeEEEecCCCeEEEEeCCC
Q 048801 363 QYSPRIYLPKPPDAITGKSNVPSNNGPSSSNGLQSHQILCCAYNANGTVFVTGSSDTFARVWSACK 428 (1715)
Q Consensus 363 ~~l~~i~~~~~~~~i~g~~~~~~~~~~~~~~~~h~~~VtslafSpdG~~LatGs~DG~IrVWDl~t 428 (1715)
. ... .| ...........+..+........|+..+..|.+..+....
T Consensus 101 ~-~~~----------~G---------~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~e 146 (276)
T 3no0_A 101 E-YKA----------QG---------MPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVRE 146 (276)
T ss_dssp T-TCS----------TT---------EECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGG
T ss_pred h-hhc----------CC---------eEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhh
Confidence 2 100 00 0011111234566666665666788888899988887643
Done!