BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048802
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 118/202 (58%), Gaps = 23/202 (11%)
Query: 1 RLFLPCFLNLVYSSFCHHWLSRVPTELVSERRIHLLNKRDVCLAKIYNPPSVPKVYFDQF 60
RLF ++ ++S +C HWLS+VP+ LV+E I + NK + +K PP + K Y DQF
Sbjct: 143 RLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISV-NKGCIYSSKASRPP-IQKAYLDQF 200
Query: 61 ESDFTSFLKFWSEELKTGSRMVLNFI-GNDKY-HTGIFELLGMVLNDMVSEGLIEESKLE 118
DFT+FL+ SEEL + RM+L FI D++ H +LL M +ND+V EG +EE KL+
Sbjct: 201 TKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLD 260
Query: 119 SFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSEGSFNIHQHETSHISWSAGY--ENDNKG 176
SF N P+Y EE ++++ EGSF I ET + + AG+ ++D +G
Sbjct: 261 SF------------NVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPYDAGFSIDDDYQG 308
Query: 177 -----LELNKHARAKNVANNIK 193
+ ++HARA +VA+ ++
Sbjct: 309 RSHSPVSCDEHARAAHVASVVR 330
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 106/196 (54%), Gaps = 22/196 (11%)
Query: 1 RLFLPCFLNLVYSSFCHHWLSRVPTELVSERRIHLLNKRDVCLAKIYNPPSVPKVYFDQF 60
RLF ++ ++S +C WLS+VP+ LV+E I NK + +K P V K Y DQF
Sbjct: 144 RLFPEESMHFLHSCYCLQWLSQVPSGLVTELGIGT-NKGSIYSSKASRLP-VQKAYLDQF 201
Query: 61 ESDFTSFLKFWSEELKTGSRMVLNFI--GNDKYHTGIFELLGMVLNDMVSEGLIEESKLE 118
DFT+FL+ SEEL + RM+L I G + +LL M +ND+V EG +EE KL+
Sbjct: 202 TKDFTTFLRIHSEELFSHGRMLLTCICKGVELDARNAIDLLEMAINDLVVEGHLEEEKLD 261
Query: 119 SFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSEGSFNIHQHETSHISWSAGYENDNKGLE 178
SF N PVY EE + ++ EGSF I ET + + AG+ D
Sbjct: 262 SF------------NLPVYIPSAEEVKCIVEEEGSFEILYLETFKVLYDAGFSID----- 304
Query: 179 LNKHARAKNVANNIKG 194
++H +A+ VA++++
Sbjct: 305 -DEHIKAEYVASSVRA 319
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 92/182 (50%), Gaps = 26/182 (14%)
Query: 1 RLFLPCFLNLVYSSFCHHWLSRVPTELVSERRIHLLNKRDVCLAKIYNPPSVPKVYFDQF 60
RLF L+ ++SS+ WLS+VP + S NK ++ +A P SV Y+ QF
Sbjct: 133 RLFPRNTLHFIHSSYSLMWLSQVPIGIES-------NKGNIYMANTC-PQSVLNAYYKQF 184
Query: 61 ESDFTSFLKFWSEELKTGSRMVLNFIGN---DKYHTG---IFELLGMVLNDMVSEGLIEE 114
+ D FL+ ++E+ G RMVL +G D+ T I++LL M LN MVSEGLIEE
Sbjct: 185 QEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEE 244
Query: 115 SKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSEGSFNIHQHETSHISWSAGYENDN 174
K++ F N P YT E + EGSF I E S I WS+ ++ +
Sbjct: 245 EKMDKF------------NIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGD 292
Query: 175 KG 176
G
Sbjct: 293 GG 294
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 27/168 (16%)
Query: 1 RLFLPCFLNLVYSSFCHHWLSRVPTELVSERRIHLLNKRDVCLAKIYNPPSVPKVYFDQF 60
RLF ++ +S+F HWLS+VP E V++RR N+ V + + Y QF
Sbjct: 144 RLFPARTIDFFHSAFSLHWLSQVP-ESVTDRRSAAYNRGRVFIHGAGEKTTT--AYKRQF 200
Query: 61 ESDFTSFLKFWSEELKTGSRMVLNFIG------NDKYHTGIFELLGM----VLNDMVSEG 110
++D FL+ + E+K G M L +G D+ G+ L G +D+V EG
Sbjct: 201 QADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGL--LFGTHFQDAWDDLVREG 258
Query: 111 LIEESKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSEGSFNIHQ 158
L+ K + F N PVY +++ ++V+ + GSF I +
Sbjct: 259 LVAAEKRDGF------------NIPVYAPSLQDFKEVVDANGSFAIDK 294
>pdb|2VTF|A Chain A, X-Ray Crystal Structure Of The Endo-Beta-N-
Acetylglucosaminidase From Arthrobacter Protophormiae
E173q Mutant Reveals A Tim Barrel Catalytic Domain And
Two Ancillary Domains
pdb|2VTF|B Chain B, X-Ray Crystal Structure Of The Endo-Beta-N-
Acetylglucosaminidase From Arthrobacter Protophormiae
E173q Mutant Reveals A Tim Barrel Catalytic Domain And
Two Ancillary Domains
Length = 626
Score = 30.0 bits (66), Expect = 0.86, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 15/106 (14%)
Query: 50 PSVPKVYFDQFESDFTSFLKFWSEELKTGSRMVLNFIGNDKYHTGIFELLGMVLNDMVS- 108
P+ P V Q++ D + W ++ V + K EL+G D +
Sbjct: 535 PAAPNVNVRQYDPDPSGIQLVWEKQSNVHHYRVYKETKHGK------ELIGTSAGDRIYL 588
Query: 109 EGLIEESKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSEGSF 154
EGL+EESK RL E +E T + R + GSF
Sbjct: 589 EGLVEESKQNDVRLHIEALSE--------TFVPSDARMIDIKSGSF 626
>pdb|3FHA|A Chain A, Structure Of Endo-Beta-N-Acetylglucosaminidase A
pdb|3FHA|B Chain B, Structure Of Endo-Beta-N-Acetylglucosaminidase A
pdb|3FHA|C Chain C, Structure Of Endo-Beta-N-Acetylglucosaminidase A
pdb|3FHA|D Chain D, Structure Of Endo-Beta-N-Acetylglucosaminidase A
Length = 621
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 15/106 (14%)
Query: 50 PSVPKVYFDQFESDFTSFLKFWSEELKTGSRMVLNFIGNDKYHTGIFELLGMVLNDMVS- 108
P+ P V Q++ D + W ++ V + K EL+G D +
Sbjct: 530 PAAPNVNVRQYDPDPSGIQLVWEKQSNVHHYRVYKETKHGK------ELIGTSAGDRIYI 583
Query: 109 EGLIEESKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSEGSF 154
EGL+EESK RL E +E T + R + GSF
Sbjct: 584 EGLVEESKQNDVRLHIEALSE--------TFVPSDARMIDIKSGSF 621
>pdb|3FHQ|A Chain A, Structure Of Endo-Beta-N-Acetylglucosaminidase A
pdb|3FHQ|B Chain B, Structure Of Endo-Beta-N-Acetylglucosaminidase A
pdb|3FHQ|D Chain D, Structure Of Endo-Beta-N-Acetylglucosaminidase A
pdb|3FHQ|F Chain F, Structure Of Endo-Beta-N-Acetylglucosaminidase A
Length = 621
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 15/106 (14%)
Query: 50 PSVPKVYFDQFESDFTSFLKFWSEELKTGSRMVLNFIGNDKYHTGIFELLGMVLNDMVS- 108
P+ P V Q++ D + W ++ V + K EL+G D +
Sbjct: 530 PAAPNVNVRQYDPDPSGIQLVWEKQSNVHHYRVYKETKHGK------ELIGTSAGDRIYI 583
Query: 109 EGLIEESKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSEGSF 154
EGL+EESK RL E +E T + R + GSF
Sbjct: 584 EGLVEESKQNDVRLHIEALSE--------TFVPSDARMIDIKSGSF 621
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,716,377
Number of Sequences: 62578
Number of extensions: 283374
Number of successful extensions: 639
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 623
Number of HSP's gapped (non-prelim): 8
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)