Query 048802
Match_columns 207
No_of_seqs 122 out of 403
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 13:27:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048802.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048802hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02668 indole-3-acetate carb 100.0 2.5E-60 5.4E-65 438.1 14.6 184 1-206 156-349 (386)
2 PF03492 Methyltransf_7: SAM d 100.0 3E-60 6.5E-65 428.9 9.2 188 1-206 101-296 (334)
3 PRK14103 trans-aconitate 2-met 95.4 0.071 1.5E-06 45.9 7.5 27 134-161 158-184 (255)
4 TIGR02072 BioC biotin biosynth 94.2 0.062 1.3E-06 44.2 3.9 78 63-153 113-198 (240)
5 TIGR02752 MenG_heptapren 2-hep 94.0 0.14 2.9E-06 43.0 5.7 25 137-162 195-219 (231)
6 PLN02233 ubiquinone biosynthes 93.7 0.31 6.7E-06 42.7 7.7 23 67-89 164-186 (261)
7 TIGR00740 methyltransferase, p 93.1 0.48 1E-05 40.3 7.8 80 63-152 139-219 (239)
8 PF08241 Methyltransf_11: Meth 93.0 0.069 1.5E-06 37.3 2.1 18 3-20 56-73 (95)
9 PRK11036 putative S-adenosyl-L 92.0 0.28 6.2E-06 42.2 5.0 28 135-163 182-209 (255)
10 PRK01683 trans-aconitate 2-met 91.9 0.58 1.3E-05 40.0 6.8 18 3-20 89-106 (258)
11 PLN02232 ubiquinone biosynthes 90.9 0.42 9.2E-06 38.7 4.7 19 137-156 124-142 (160)
12 COG2226 UbiE Methylase involve 89.7 0.62 1.3E-05 41.3 5.0 24 3-26 115-138 (238)
13 KOG1540 Ubiquinone biosynthesi 87.4 1.1 2.3E-05 41.0 5.0 61 74-152 203-273 (296)
14 PF01209 Ubie_methyltran: ubiE 86.9 0.6 1.3E-05 40.6 3.1 18 3-20 112-129 (233)
15 PRK15451 tRNA cmo(5)U34 methyl 85.0 4.3 9.2E-05 35.0 7.4 80 64-152 143-222 (247)
16 PRK06922 hypothetical protein; 84.2 0.98 2.1E-05 45.7 3.4 53 3-84 483-536 (677)
17 PF13489 Methyltransf_23: Meth 83.7 1.1 2.3E-05 34.5 2.8 46 3-89 74-119 (161)
18 PRK10258 biotin biosynthesis p 82.4 1.5 3.2E-05 37.4 3.5 24 66-89 121-144 (251)
19 PLN02244 tocopherol O-methyltr 80.8 7 0.00015 35.6 7.4 22 139-161 257-278 (340)
20 PRK15068 tRNA mo(5)U34 methylt 78.0 3.9 8.5E-05 37.1 4.8 73 62-162 203-275 (322)
21 PRK00216 ubiE ubiquinone/menaq 76.9 13 0.00028 30.5 7.3 25 138-163 203-227 (239)
22 KOG2940 Predicted methyltransf 76.0 0.86 1.9E-05 41.4 0.0 26 3-28 133-158 (325)
23 TIGR00730 conserved hypothetic 74.9 6 0.00013 33.3 4.8 66 69-149 87-176 (178)
24 PLN02336 phosphoethanolamine N 73.1 3.2 6.9E-05 39.0 3.0 22 63-84 120-141 (475)
25 TIGR01934 MenG_MenH_UbiE ubiqu 70.0 11 0.00024 30.6 5.3 87 61-163 119-212 (223)
26 PRK12335 tellurite resistance 70.0 15 0.00033 32.3 6.5 58 62-160 200-258 (287)
27 PRK06202 hypothetical protein; 69.3 20 0.00044 30.2 6.9 28 137-166 200-227 (232)
28 smart00828 PKS_MT Methyltransf 67.8 8.9 0.00019 31.8 4.3 67 62-164 81-147 (224)
29 PTZ00098 phosphoethanolamine N 65.6 6.4 0.00014 34.4 3.2 26 63-88 134-159 (263)
30 cd08788 CARD_NOD2_2_CARD15 Cas 62.4 8.8 0.00019 29.1 2.9 42 95-149 12-53 (81)
31 PRK11207 tellurite resistance 60.9 11 0.00024 31.4 3.6 21 137-160 149-169 (197)
32 TIGR00477 tehB tellurite resis 60.8 10 0.00022 31.5 3.4 22 137-161 148-169 (195)
33 PF08242 Methyltransf_12: Meth 60.4 8.2 0.00018 27.8 2.5 15 6-20 65-79 (99)
34 PRK11188 rrmJ 23S rRNA methylt 59.3 22 0.00047 30.1 5.2 24 64-87 144-167 (209)
35 PLN02396 hexaprenyldihydroxybe 57.4 21 0.00046 32.7 5.1 78 62-162 212-290 (322)
36 PF09851 SHOCT: Short C-termin 53.7 12 0.00026 22.9 2.0 19 101-119 6-24 (31)
37 PRK00121 trmB tRNA (guanine-N( 53.2 22 0.00047 29.8 4.2 42 65-114 136-177 (202)
38 PF02268 TFIIA_gamma_N: Transc 51.6 19 0.00042 24.7 2.9 25 93-117 9-33 (49)
39 PRK11705 cyclopropane fatty ac 50.3 33 0.00072 32.0 5.3 72 62-165 244-316 (383)
40 TIGR02469 CbiT precorrin-6Y C5 49.2 15 0.00031 26.9 2.2 25 62-86 99-123 (124)
41 PF03641 Lysine_decarbox: Poss 48.8 23 0.00049 28.1 3.4 41 93-148 93-133 (133)
42 PF12847 Methyltransf_18: Meth 46.0 13 0.00027 27.0 1.5 24 62-85 88-111 (112)
43 COG2518 Pcm Protein-L-isoaspar 45.2 31 0.00068 30.2 4.0 30 40-86 141-170 (209)
44 PF01234 NNMT_PNMT_TEMT: NNMT/ 44.5 22 0.00047 31.9 3.0 53 72-160 186-238 (256)
45 PF02375 JmjN: jmjN domain; I 44.2 9 0.00019 24.3 0.4 15 135-149 1-15 (34)
46 smart00138 MeTrc Methyltransfe 44.1 21 0.00045 31.4 2.8 18 66-83 223-240 (264)
47 PF10357 Kin17_mid: Domain of 43.0 23 0.00049 28.9 2.6 70 48-117 9-82 (127)
48 PLN02336 phosphoethanolamine N 42.8 30 0.00064 32.5 3.7 24 66-89 350-373 (475)
49 KOG1270 Methyltransferases [Co 42.3 14 0.0003 33.9 1.4 68 62-152 172-241 (282)
50 PRK05785 hypothetical protein; 40.3 10 0.00022 32.5 0.2 23 3-25 106-128 (226)
51 TIGR00452 methyltransferase, p 38.8 69 0.0015 29.3 5.4 70 62-159 202-271 (314)
52 COG4123 Predicted O-methyltran 35.5 36 0.00078 30.5 2.9 48 34-85 123-170 (248)
53 TIGR03587 Pse_Me-ase pseudamin 34.7 23 0.0005 29.9 1.5 19 3-21 101-119 (204)
54 KOG3010 Methyltransferase [Gen 34.1 15 0.00033 33.3 0.3 17 4-20 97-113 (261)
55 PF09597 IGR: IGR protein moti 33.5 34 0.00073 24.2 1.9 27 54-80 13-39 (57)
56 PRK04266 fibrillarin; Provisio 33.3 92 0.002 26.9 5.1 47 67-113 158-205 (226)
57 smart00545 JmjN Small domain f 32.8 25 0.00054 23.3 1.1 16 134-149 2-17 (42)
58 PRK11524 putative methyltransf 32.3 61 0.0013 28.6 3.9 73 7-85 7-80 (284)
59 PF03962 Mnd1: Mnd1 family; I 32.2 33 0.00071 29.2 2.1 34 96-141 29-62 (188)
60 KOG3463 Transcription initiati 30.9 47 0.001 26.5 2.6 54 96-163 13-67 (109)
61 PF09066 B2-adapt-app_C: Beta2 30.9 23 0.0005 26.9 0.8 55 107-161 2-58 (114)
62 KOG1661 Protein-L-isoaspartate 30.4 52 0.0011 29.5 3.0 30 40-86 165-194 (237)
63 PRK13699 putative methylase; P 30.3 60 0.0013 28.1 3.4 14 72-85 59-72 (227)
64 PRK01060 endonuclease IV; Prov 29.5 3.3E+02 0.0072 23.2 7.9 86 54-152 81-169 (281)
65 PF01555 N6_N4_Mtase: DNA meth 27.7 87 0.0019 25.1 3.8 51 33-87 7-58 (231)
66 KOG0451 Predicted 2-oxoglutara 27.6 77 0.0017 32.5 4.0 69 41-122 390-477 (913)
67 PRK10079 phosphonate metabolis 27.0 1.1E+02 0.0024 26.0 4.5 51 58-116 15-69 (241)
68 PF06256 Nucleo_LEF-12: Nucleo 26.7 65 0.0014 27.9 2.9 30 93-122 13-42 (185)
69 smart00418 HTH_ARSR helix_turn 26.6 64 0.0014 20.4 2.3 39 97-149 25-63 (66)
70 COG2231 Uncharacterized protei 25.4 1.1E+02 0.0024 27.2 4.1 45 92-155 41-85 (215)
71 PF10925 DUF2680: Protein of u 24.9 91 0.002 22.0 2.9 28 93-120 14-41 (59)
72 PF00619 CARD: Caspase recruit 24.8 80 0.0017 22.2 2.7 23 98-120 17-39 (85)
73 cd08325 CARD_CASP1-like Caspas 24.5 72 0.0016 23.6 2.5 25 96-120 15-39 (83)
74 COG5459 Predicted rRNA methyla 24.3 79 0.0017 30.7 3.3 60 74-151 214-273 (484)
75 KOG1541 Predicted protein carb 24.2 1.1E+02 0.0024 27.9 4.0 53 3-85 108-160 (270)
76 KOG2837 Protein containing a U 23.2 76 0.0016 29.4 2.8 70 48-117 60-133 (309)
77 COG5124 Protein predicted to b 22.9 58 0.0013 28.5 1.9 35 94-140 40-74 (209)
78 cd05721 IgV_CTLA-4 Immunoglobu 22.8 44 0.00096 26.7 1.1 25 3-27 11-43 (115)
79 cd08330 CARD_ASC_NALP1 Caspase 22.1 85 0.0018 23.1 2.4 23 98-120 16-38 (82)
80 PF08714 Fae: Formaldehyde-act 21.7 83 0.0018 26.7 2.6 24 97-120 81-104 (159)
81 smart00518 AP2Ec AP endonuclea 21.6 4.2E+02 0.0092 22.5 7.1 70 72-153 93-164 (273)
82 PF05193 Peptidase_M16_C: Pept 21.3 1.1E+02 0.0024 23.0 3.1 25 94-119 155-179 (184)
83 PF13659 Methyltransf_26: Meth 21.2 63 0.0014 23.5 1.6 25 62-86 92-116 (117)
84 TIGR03126 one_C_fae formaldehy 20.7 78 0.0017 26.9 2.2 24 97-120 83-106 (160)
85 TIGR02081 metW methionine bios 20.6 50 0.0011 27.1 1.0 26 136-162 143-168 (194)
86 cd01671 CARD Caspase activatio 20.5 1.3E+02 0.0028 20.9 3.1 23 98-120 14-36 (80)
87 TIGR00138 gidB 16S rRNA methyl 20.4 1.4E+02 0.003 24.7 3.7 51 63-120 120-170 (181)
No 1
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=2.5e-60 Score=438.12 Aligned_cols=184 Identities=28% Similarity=0.450 Sum_probs=169.9
Q ss_pred CCcCCCccceeecccccccccCCCccccchhcccccccccEEEeccCCCccHHHHHHHHHHHHHHHHHhhcccccccCce
Q 048802 1 RLFLPCFLNLVYSSFCHHWLSRVPTELVSERRIHLLNKRDVCLAKIYNPPSVPKVYFDQFESDFTSFLKFWSEELKTGSR 80 (207)
Q Consensus 1 RLfP~~Slh~~~Ss~alHWLS~vP~~l~~~~~s~~~Nkg~i~~~~~~s~~~v~~ay~~Qf~~D~~~FL~~Ra~EL~~GG~ 80 (207)
||||++||||+|||||||||||||+++.+ ++|++||||+||++++ + |+|.+||++||++||+.||++||+||||||+
T Consensus 156 RLfP~~Slh~~~Ss~slHWLS~vP~~l~d-~~s~~~Nkg~iyi~~~-s-~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~ 232 (386)
T PLN02668 156 RLFPARSIDVFHSAFSLHWLSQVPESVTD-KRSAAYNKGRVFIHGA-S-ESTANAYKRQFQADLAGFLRARAQEMKRGGA 232 (386)
T ss_pred cccCCCceEEEEeeccceecccCchhhcc-CCcccccCCceEecCC-C-HHHHHHHHHHHHHHHHHHHHHHHHHhccCcE
Confidence 89999999999999999999999999986 8889999999999998 4 8899999999999999999999999999999
Q ss_pred EEEEeecCC---Cc----cccHHHH-HHHHHHHHHHcCCCchhhhhccccccccCCCCCccccccccCHHHHHhhhccCC
Q 048802 81 MVLNFIGND---KY----HTGIFEL-LGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSEG 152 (207)
Q Consensus 81 mvl~~~g~~---~~----~~~~~~~-l~~~l~dmv~eGlI~eek~dsF~~~~~~~~~~~~n~P~Y~~s~eEv~~~i~~~g 152 (207)
|||+++||+ ++ .+.+|++ |+++|+|||+||+|++||+|+| |+|+|+||+||++++|+++|
T Consensus 233 mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsF------------niP~Y~ps~eEv~~~Ie~~g 300 (386)
T PLN02668 233 MFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSF------------NIPVYAPSLQDFKEVVEANG 300 (386)
T ss_pred EEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcc------------cCcccCCCHHHHHHHHhhcC
Confidence 999999996 22 2446777 9999999999999999999999 99999999999999999999
Q ss_pred ceEEeEEeeeecccCCCCCCCcccchhhhhHHHHHHHHhcc--cccccccCCCCCC
Q 048802 153 SFNIHQHETSHISWSAGYENDNKGLELNKHARAKNVANNIK--GESLLVGVGKFGL 206 (207)
Q Consensus 153 sF~I~~~E~~~~~w~~~~~~~~~~~~~~~~~~~~~va~~iR--~Epll~~~~hFG~ 206 (207)
||+|+++|+++..|+.+ .+. ..|....|+++|+++| +||||++ |||+
T Consensus 301 sF~I~~le~~~~~~~~~-~~~----~~d~~~~g~~~a~~~RA~~E~ll~~--HFG~ 349 (386)
T PLN02668 301 SFAIDKLEVFKGGSPLV-VNE----PDDAAEVGRAMANSCRSVAGVLVDA--HIGE 349 (386)
T ss_pred CEEeeeeEEeeccCccc-ccC----cccHHHHHHHHHHHHHHHHHHHHHH--HcCH
Confidence 99999999999999875 322 2356778999999999 9999999 9996
No 2
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=3e-60 Score=428.92 Aligned_cols=188 Identities=42% Similarity=0.671 Sum_probs=156.5
Q ss_pred CCcCCCccceeecccccccccCCCccccchhcccccccccEEEeccCCCccHHHHHHHHHHHHHHHHHhhcccccccCce
Q 048802 1 RLFLPCFLNLVYSSFCHHWLSRVPTELVSERRIHLLNKRDVCLAKIYNPPSVPKVYFDQFESDFTSFLKFWSEELKTGSR 80 (207)
Q Consensus 1 RLfP~~Slh~~~Ss~alHWLS~vP~~l~~~~~s~~~Nkg~i~~~~~~s~~~v~~ay~~Qf~~D~~~FL~~Ra~EL~~GG~ 80 (207)
||||++||||+|||||||||||+|+++.+ ++|++||||+||++++ +|++|.+||++||++||++||++||+||||||+
T Consensus 101 rLfP~~Svh~~~Ss~alHWLS~vP~~l~~-~~~~~~Nkg~i~~~~~-~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~ 178 (334)
T PF03492_consen 101 RLFPSNSVHFGHSSYALHWLSQVPEELVD-KSSPAWNKGNIYISRT-SPPEVAKAYAKQFQKDFSSFLKARAEELVPGGR 178 (334)
T ss_dssp --S-TT-EEEEEEES-TTB-SSS-CCCCT-TTSTTTSTTTSSSSTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred ccCCCCceEEEEEechhhhcccCCccccc-ccccccccCcEEEecC-CCHHHHHHHHHHHHHHHHHHHHHhhheeccCcE
Confidence 89999999999999999999999999998 7789999999999988 899999999999999999999999999999999
Q ss_pred EEEEeecCCC---c---cccHHHHHHHHHHHHHHcCCCchhhhhccccccccCCCCCccccccccCHHHHHhhhccCCce
Q 048802 81 MVLNFIGNDK---Y---HTGIFELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSEGSF 154 (207)
Q Consensus 81 mvl~~~g~~~---~---~~~~~~~l~~~l~dmv~eGlI~eek~dsF~~~~~~~~~~~~n~P~Y~~s~eEv~~~i~~~gsF 154 (207)
|||+++||+. . .+.+|++|+++|+|||.||+|++||+|+| |+|+|+||.|||+++|+++|||
T Consensus 179 mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsf------------niP~Y~ps~eEv~~~I~~~gsF 246 (334)
T PF03492_consen 179 MVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSF------------NIPIYFPSPEEVRAIIEEEGSF 246 (334)
T ss_dssp EEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--------------SBB---HHHHHHHHHHHTSE
T ss_pred EEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhce------------eCCccCCCHHHHHHHHhcCCCE
Confidence 9999999983 2 46799999999999999999999999999 9999999999999999999999
Q ss_pred EEeEEeeeecccCCCCCCCcccchhhhhHHHHHHHHhcc--cccccccCCCCCC
Q 048802 155 NIHQHETSHISWSAGYENDNKGLELNKHARAKNVANNIK--GESLLVGVGKFGL 206 (207)
Q Consensus 155 ~I~~~E~~~~~w~~~~~~~~~~~~~~~~~~~~~va~~iR--~Epll~~~~hFG~ 206 (207)
+|+++|++...|... +.+ .....|...+|+.+|+++| +||+|++ |||+
T Consensus 247 ~I~~le~~~~~~~~~-~~~-~~~~~d~~~~~~~~~~~iRA~~e~~l~~--hfG~ 296 (334)
T PF03492_consen 247 EIEKLELFEQPWWSV-PDD-ESWKEDAKEYARNVANYIRAVFEPLLKA--HFGE 296 (334)
T ss_dssp EEEEEEEEEEETCCT-CTT-T-STTTHHCHHHHHHHHHHHHHHHHHHH--HH-H
T ss_pred EEEEEEEEeeccccc-chh-hhcccchhhhHHHHHHhHHHHHHHHHHH--HhCh
Confidence 999999999665443 111 1123457789999999999 9999999 9996
No 3
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=95.37 E-value=0.071 Score=45.91 Aligned_cols=27 Identities=11% Similarity=0.100 Sum_probs=20.5
Q ss_pred ccccccCHHHHHhhhccCCceEEeEEee
Q 048802 134 YPVYTLCVEEGRQVMGSEGSFNIHQHET 161 (207)
Q Consensus 134 ~P~Y~~s~eEv~~~i~~~gsF~I~~~E~ 161 (207)
.+.+..+.+++.+.+++.| |++...++
T Consensus 158 ~~~~~~~~~~~~~~l~~aG-f~v~~~~~ 184 (255)
T PRK14103 158 VGAVVQTPAGYAELLTDAG-CKVDAWET 184 (255)
T ss_pred cCcCCCCHHHHHHHHHhCC-CeEEEEee
Confidence 3455679999999999988 77655554
No 4
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=94.16 E-value=0.062 Score=44.24 Aligned_cols=78 Identities=15% Similarity=0.082 Sum_probs=48.2
Q ss_pred HHHHHHhhcccccccCceEEEEeecCCCc--cccHHHH------HHHHHHHHHHcCCCchhhhhccccccccCCCCCccc
Q 048802 63 DFTSFLKFWSEELKTGSRMVLNFIGNDKY--HTGIFEL------LGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNY 134 (207)
Q Consensus 63 D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~--~~~~~~~------l~~~l~dmv~eGlI~eek~dsF~~~~~~~~~~~~n~ 134 (207)
|...+|+.-.+-|+|||.+++..++.... ....+.. =...|.++..+. ....+.+.. .+
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~------------~~ 179 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTLEEE------------LI 179 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEEEEE------------EE
Confidence 44556777777889999999887665421 0111110 012344555554 555555566 78
Q ss_pred cccccCHHHHHhhhccCCc
Q 048802 135 PVYTLCVEEGRQVMGSEGS 153 (207)
Q Consensus 135 P~Y~~s~eEv~~~i~~~gs 153 (207)
+.++++..++...+..-|.
T Consensus 180 ~~~~~~~~~~~~~l~~~g~ 198 (240)
T TIGR02072 180 TLSFDDPLDVLRHLKKTGA 198 (240)
T ss_pred EEeCCCHHHHHHHHHHhcc
Confidence 8888888888888877663
No 5
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=93.99 E-value=0.14 Score=42.99 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=20.3
Q ss_pred cccCHHHHHhhhccCCceEEeEEeee
Q 048802 137 YTLCVEEGRQVMGSEGSFNIHQHETS 162 (207)
Q Consensus 137 Y~~s~eEv~~~i~~~gsF~I~~~E~~ 162 (207)
.+++.+|+++.+++.| |++.+++.+
T Consensus 195 ~~~~~~~l~~~l~~aG-f~~~~~~~~ 219 (231)
T TIGR02752 195 DFPGMDELAEMFQEAG-FKDVEVKSY 219 (231)
T ss_pred HcCCHHHHHHHHHHcC-CCeeEEEEc
Confidence 4579999999999888 887766654
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=93.73 E-value=0.31 Score=42.69 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=17.2
Q ss_pred HHhhcccccccCceEEEEeecCC
Q 048802 67 FLKFWSEELKTGSRMVLNFIGND 89 (207)
Q Consensus 67 FL~~Ra~EL~~GG~mvl~~~g~~ 89 (207)
+|+.=.+=|+|||++++.-.+.+
T Consensus 164 ~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 164 AMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred HHHHHHHHcCcCcEEEEEECCCC
Confidence 44444556899999999988765
No 7
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=93.15 E-value=0.48 Score=40.29 Aligned_cols=80 Identities=23% Similarity=0.165 Sum_probs=47.4
Q ss_pred HHHHHHhhcccccccCceEEEEeecCCCccccHHHHHHHHHHHHHH-cCCCchhhhhccccccccCCCCCccccccccCH
Q 048802 63 DFTSFLKFWSEELKTGSRMVLNFIGNDKYHTGIFELLGMVLNDMVS-EGLIEESKLESFRLGFENNAEPTLNYPVYTLCV 141 (207)
Q Consensus 63 D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~l~~~l~dmv~-eGlI~eek~dsF~~~~~~~~~~~~n~P~Y~~s~ 141 (207)
|...+|+.-.+-|+|||++++.-..+... ....+.+...+..... .| .+++++...+-.++| .....++
T Consensus 139 ~~~~~l~~i~~~LkpgG~l~i~d~~~~~~-~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~--------~~~~~s~ 208 (239)
T TIGR00740 139 DRIALLTKIYEGLNPNGVLVLSEKFRFED-TKINHLLIDLHHQFKRANG-YSELEISQKRTALEN--------VMRTDSI 208 (239)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeecccCCC-HhHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhc--------cCCCCCH
Confidence 45567777778899999999886544322 1122333333333333 44 366555444222222 2344699
Q ss_pred HHHHhhhccCC
Q 048802 142 EEGRQVMGSEG 152 (207)
Q Consensus 142 eEv~~~i~~~g 152 (207)
+|+++.+++.|
T Consensus 209 ~~~~~~l~~aG 219 (239)
T TIGR00740 209 ETHKARLKNVG 219 (239)
T ss_pred HHHHHHHHHcC
Confidence 99999999887
No 8
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=93.04 E-value=0.069 Score=37.33 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=15.0
Q ss_pred cCCCccceeecccccccc
Q 048802 3 FLPCFLNLVYSSFCHHWL 20 (207)
Q Consensus 3 fP~~Slh~~~Ss~alHWL 20 (207)
||++|+|++++..++||+
T Consensus 56 ~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 56 FPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp S-TT-EEEEEEESHGGGS
T ss_pred cccccccccccccceeec
Confidence 789999999999999997
No 9
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=92.00 E-value=0.28 Score=42.25 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=21.8
Q ss_pred cccccCHHHHHhhhccCCceEEeEEeeee
Q 048802 135 PVYTLCVEEGRQVMGSEGSFNIHQHETSH 163 (207)
Q Consensus 135 P~Y~~s~eEv~~~i~~~gsF~I~~~E~~~ 163 (207)
|.+..+++++.+.+++.| |++....-+.
T Consensus 182 p~~~~~~~~l~~~l~~aG-f~~~~~~gi~ 209 (255)
T PRK11036 182 PDYPLDPEQVYQWLEEAG-WQIMGKTGVR 209 (255)
T ss_pred CCCCCCHHHHHHHHHHCC-CeEeeeeeEE
Confidence 667789999999999876 8877655543
No 10
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=91.93 E-value=0.58 Score=40.00 Aligned_cols=18 Identities=28% Similarity=0.624 Sum_probs=14.3
Q ss_pred cCCCccceeecccccccc
Q 048802 3 FLPCFLNLVYSSFCHHWL 20 (207)
Q Consensus 3 fP~~Slh~~~Ss~alHWL 20 (207)
.|+.+.|+++|+.++||+
T Consensus 89 ~~~~~fD~v~~~~~l~~~ 106 (258)
T PRK01683 89 QPPQALDLIFANASLQWL 106 (258)
T ss_pred CCCCCccEEEEccChhhC
Confidence 466788888888888885
No 11
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=90.93 E-value=0.42 Score=38.67 Aligned_cols=19 Identities=26% Similarity=0.127 Sum_probs=15.2
Q ss_pred cccCHHHHHhhhccCCceEE
Q 048802 137 YTLCVEEGRQVMGSEGSFNI 156 (207)
Q Consensus 137 Y~~s~eEv~~~i~~~gsF~I 156 (207)
.+++.+|+.+.+++.| |+.
T Consensus 124 ~f~~~~el~~ll~~aG-F~~ 142 (160)
T PLN02232 124 GYLTGEELETLALEAG-FSS 142 (160)
T ss_pred HCcCHHHHHHHHHHcC-CCc
Confidence 3579999999999877 553
No 12
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=89.74 E-value=0.62 Score=41.25 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=20.4
Q ss_pred cCCCccceeecccccccccCCCcc
Q 048802 3 FLPCFLNLVYSSFCHHWLSRVPTE 26 (207)
Q Consensus 3 fP~~Slh~~~Ss~alHWLS~vP~~ 26 (207)
||++|.|++..+|.||++.+.|+.
T Consensus 115 f~D~sFD~vt~~fglrnv~d~~~a 138 (238)
T COG2226 115 FPDNSFDAVTISFGLRNVTDIDKA 138 (238)
T ss_pred CCCCccCEEEeeehhhcCCCHHHH
Confidence 899999999999999997654443
No 13
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=87.38 E-value=1.1 Score=41.04 Aligned_cols=61 Identities=16% Similarity=0.104 Sum_probs=46.8
Q ss_pred ccccCceEEEEeecCC--Cc-----cccH---HHHHHHHHHHHHHcCCCchhhhhccccccccCCCCCccccccccCHHH
Q 048802 74 ELKTGSRMVLNFIGND--KY-----HTGI---FELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLCVEE 143 (207)
Q Consensus 74 EL~~GG~mvl~~~g~~--~~-----~~~~---~~~l~~~l~dmv~eGlI~eek~dsF~~~~~~~~~~~~n~P~Y~~s~eE 143 (207)
=||||||+.+.-+..- ++ .... .-.|+..+......+.+=-+-+..| |+.||
T Consensus 203 VLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rf------------------p~qe~ 264 (296)
T KOG1540|consen 203 VLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRF------------------PPQEE 264 (296)
T ss_pred hcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcC------------------CCHHH
Confidence 5899999998777654 12 2223 3457888888888888888888888 88999
Q ss_pred HHhhhccCC
Q 048802 144 GRQVMGSEG 152 (207)
Q Consensus 144 v~~~i~~~g 152 (207)
+...|++.|
T Consensus 265 f~~miedaG 273 (296)
T KOG1540|consen 265 FASMIEDAG 273 (296)
T ss_pred HHHHHHHcC
Confidence 999999876
No 14
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=86.92 E-value=0.6 Score=40.63 Aligned_cols=18 Identities=22% Similarity=0.156 Sum_probs=12.4
Q ss_pred cCCCccceeecccccccc
Q 048802 3 FLPCFLNLVYSSFCHHWL 20 (207)
Q Consensus 3 fP~~Slh~~~Ss~alHWL 20 (207)
||++|.|.+.++|.+|-+
T Consensus 112 ~~d~sfD~v~~~fglrn~ 129 (233)
T PF01209_consen 112 FPDNSFDAVTCSFGLRNF 129 (233)
T ss_dssp S-TT-EEEEEEES-GGG-
T ss_pred CCCCceeEEEHHhhHHhh
Confidence 788999999999998864
No 15
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=84.99 E-value=4.3 Score=34.99 Aligned_cols=80 Identities=20% Similarity=0.101 Sum_probs=49.0
Q ss_pred HHHHHhhcccccccCceEEEEeecCCCccccHHHHHHHHHHHHHHcCCCchhhhhccccccccCCCCCccccccccCHHH
Q 048802 64 FTSFLKFWSEELKTGSRMVLNFIGNDKYHTGIFELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLCVEE 143 (207)
Q Consensus 64 ~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~l~~~l~dmv~eGlI~eek~dsF~~~~~~~~~~~~n~P~Y~~s~eE 143 (207)
...+|+.=.+=|+|||++++.=.-.... ....+.+-..+.++....=.+++++..++-.++|. -.| -++++
T Consensus 143 ~~~~l~~i~~~LkpGG~l~l~e~~~~~~-~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~-----~~~---~~~~~ 213 (247)
T PRK15451 143 RQALLDKIYQGLNPGGALVLSEKFSFED-AKVGELLFNMHHDFKRANGYSELEISQKRSMLENV-----MLT---DSVET 213 (247)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEecCCCc-chhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhh-----ccc---CCHHH
Confidence 3455565567789999999974322211 11223344556666666667777776664444431 122 57899
Q ss_pred HHhhhccCC
Q 048802 144 GRQVMGSEG 152 (207)
Q Consensus 144 v~~~i~~~g 152 (207)
..+.+++.|
T Consensus 214 ~~~~L~~aG 222 (247)
T PRK15451 214 HKARLHKAG 222 (247)
T ss_pred HHHHHHHcC
Confidence 999998776
No 16
>PRK06922 hypothetical protein; Provisional
Probab=84.15 E-value=0.98 Score=45.67 Aligned_cols=53 Identities=25% Similarity=0.161 Sum_probs=38.9
Q ss_pred cCCCccceeecccccccc-cCCCccccchhcccccccccEEEeccCCCccHHHHHHHHHHHHHHHHHhhcccccccCceE
Q 048802 3 FLPCFLNLVYSSFCHHWL-SRVPTELVSERRIHLLNKRDVCLAKIYNPPSVPKVYFDQFESDFTSFLKFWSEELKTGSRM 81 (207)
Q Consensus 3 fP~~Slh~~~Ss~alHWL-S~vP~~l~~~~~s~~~Nkg~i~~~~~~s~~~v~~ay~~Qf~~D~~~FL~~Ra~EL~~GG~m 81 (207)
||++++|++++++++||+ +.+|..-. .| + ..|...+|+.=.+=|+|||++
T Consensus 483 fedeSFDvVVsn~vLH~L~syIp~~g~------~f-----------~------------~edl~kiLreI~RVLKPGGrL 533 (677)
T PRK06922 483 FEKESVDTIVYSSILHELFSYIEYEGK------KF-----------N------------HEVIKKGLQSAYEVLKPGGRI 533 (677)
T ss_pred cCCCCEEEEEEchHHHhhhhhcccccc------cc-----------c------------HHHHHHHHHHHHHHcCCCcEE
Confidence 788999999999999964 55653211 00 1 146777777777889999999
Q ss_pred EEE
Q 048802 82 VLN 84 (207)
Q Consensus 82 vl~ 84 (207)
++.
T Consensus 534 II~ 536 (677)
T PRK06922 534 IIR 536 (677)
T ss_pred EEE
Confidence 986
No 17
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=83.65 E-value=1.1 Score=34.48 Aligned_cols=46 Identities=26% Similarity=0.252 Sum_probs=33.5
Q ss_pred cCCCccceeecccccccccCCCccccchhcccccccccEEEeccCCCccHHHHHHHHHHHHHHHHHhhcccccccCceEE
Q 048802 3 FLPCFLNLVYSSFCHHWLSRVPTELVSERRIHLLNKRDVCLAKIYNPPSVPKVYFDQFESDFTSFLKFWSEELKTGSRMV 82 (207)
Q Consensus 3 fP~~Slh~~~Ss~alHWLS~vP~~l~~~~~s~~~Nkg~i~~~~~~s~~~v~~ay~~Qf~~D~~~FL~~Ra~EL~~GG~mv 82 (207)
+|+++.|+++++.+|||+.. ...+|+.=.+=|+|||.++
T Consensus 74 ~~~~~fD~i~~~~~l~~~~d-----------------------------------------~~~~l~~l~~~LkpgG~l~ 112 (161)
T PF13489_consen 74 FPDGSFDLIICNDVLEHLPD-----------------------------------------PEEFLKELSRLLKPGGYLV 112 (161)
T ss_dssp CHSSSEEEEEEESSGGGSSH-----------------------------------------HHHHHHHHHHCEEEEEEEE
T ss_pred ccccchhhHhhHHHHhhccc-----------------------------------------HHHHHHHHHHhcCCCCEEE
Confidence 46788888998888888542 2233444445689999999
Q ss_pred EEeecCC
Q 048802 83 LNFIGND 89 (207)
Q Consensus 83 l~~~g~~ 89 (207)
+..+.+.
T Consensus 113 ~~~~~~~ 119 (161)
T PF13489_consen 113 ISDPNRD 119 (161)
T ss_dssp EEEEBTT
T ss_pred EEEcCCc
Confidence 9998874
No 18
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=82.41 E-value=1.5 Score=37.40 Aligned_cols=24 Identities=8% Similarity=0.138 Sum_probs=17.1
Q ss_pred HHHhhcccccccCceEEEEeecCC
Q 048802 66 SFLKFWSEELKTGSRMVLNFIGND 89 (207)
Q Consensus 66 ~FL~~Ra~EL~~GG~mvl~~~g~~ 89 (207)
.+|+.-.+=|+|||.++++.++.+
T Consensus 121 ~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 121 TALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred HHHHHHHHHcCCCeEEEEEeCCCC
Confidence 334444466899999999887764
No 19
>PLN02244 tocopherol O-methyltransferase
Probab=80.75 E-value=7 Score=35.58 Aligned_cols=22 Identities=14% Similarity=0.075 Sum_probs=16.9
Q ss_pred cCHHHHHhhhccCCceEEeEEee
Q 048802 139 LCVEEGRQVMGSEGSFNIHQHET 161 (207)
Q Consensus 139 ~s~eEv~~~i~~~gsF~I~~~E~ 161 (207)
.+.+|+.+.+++.| |...+.+.
T Consensus 257 ~s~~~~~~~l~~aG-f~~v~~~d 278 (340)
T PLN02244 257 CSTSDYVKLAESLG-LQDIKTED 278 (340)
T ss_pred CCHHHHHHHHHHCC-CCeeEeee
Confidence 48999999999888 66655543
No 20
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=77.96 E-value=3.9 Score=37.13 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=45.3
Q ss_pred HHHHHHHhhcccccccCceEEEEeecCCCccccHHHHHHHHHHHHHHcCCCchhhhhccccccccCCCCCccccccccCH
Q 048802 62 SDFTSFLKFWSEELKTGSRMVLNFIGNDKYHTGIFELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLCV 141 (207)
Q Consensus 62 ~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~l~~~l~dmv~eGlI~eek~dsF~~~~~~~~~~~~n~P~Y~~s~ 141 (207)
.|...+|+.=.+-|+|||++++..+..+..... .+...+....+ .-..+.||.
T Consensus 203 ~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~---------------~l~p~~~y~~~------------~~~~~lps~ 255 (322)
T PRK15068 203 RSPLDHLKQLKDQLVPGGELVLETLVIDGDENT---------------VLVPGDRYAKM------------RNVYFIPSV 255 (322)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEEEEecCCCcc---------------ccCchhHHhcC------------ccceeCCCH
Confidence 567777888888899999999875433311000 01112222223 222346799
Q ss_pred HHHHhhhccCCceEEeEEeee
Q 048802 142 EEGRQVMGSEGSFNIHQHETS 162 (207)
Q Consensus 142 eEv~~~i~~~gsF~I~~~E~~ 162 (207)
+++...+++.| |++.+++..
T Consensus 256 ~~l~~~L~~aG-F~~i~~~~~ 275 (322)
T PRK15068 256 PALKNWLERAG-FKDVRIVDV 275 (322)
T ss_pred HHHHHHHHHcC-CceEEEEeC
Confidence 99999999888 777766544
No 21
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=76.88 E-value=13 Score=30.54 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=18.0
Q ss_pred ccCHHHHHhhhccCCceEEeEEeeee
Q 048802 138 TLCVEEGRQVMGSEGSFNIHQHETSH 163 (207)
Q Consensus 138 ~~s~eEv~~~i~~~gsF~I~~~E~~~ 163 (207)
.++.+++...+++.| |++.+...+.
T Consensus 203 ~~~~~~~~~~l~~aG-f~~~~~~~~~ 227 (239)
T PRK00216 203 FPDQEELAAMLEEAG-FERVRYRNLT 227 (239)
T ss_pred CCCHHHHHHHHHhCC-Cceeeeeeee
Confidence 468999999999776 5655555543
No 22
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=76.05 E-value=0.86 Score=41.45 Aligned_cols=26 Identities=27% Similarity=0.625 Sum_probs=22.9
Q ss_pred cCCCccceeecccccccccCCCcccc
Q 048802 3 FLPCFLNLVYSSFCHHWLSRVPTELV 28 (207)
Q Consensus 3 fP~~Slh~~~Ss~alHWLS~vP~~l~ 28 (207)
|-.+|+|+++||-++||....|....
T Consensus 133 f~ens~DLiisSlslHW~NdLPg~m~ 158 (325)
T KOG2940|consen 133 FKENSVDLIISSLSLHWTNDLPGSMI 158 (325)
T ss_pred ccccchhhhhhhhhhhhhccCchHHH
Confidence 56799999999999999999987654
No 23
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=74.86 E-value=6 Score=33.31 Aligned_cols=66 Identities=18% Similarity=0.104 Sum_probs=49.8
Q ss_pred hhcccccccCceEEEEeecCC--------------------Cc----cccHHHHHHHHHHHHHHcCCCchhhhhcccccc
Q 048802 69 KFWSEELKTGSRMVLNFIGND--------------------KY----HTGIFELLGMVLNDMVSEGLIEESKLESFRLGF 124 (207)
Q Consensus 69 ~~Ra~EL~~GG~mvl~~~g~~--------------------~~----~~~~~~~l~~~l~dmv~eGlI~eek~dsF~~~~ 124 (207)
..|.+-+.--+--++.++|.- |- ...+|+-|-+-++.|+++|.|+++.++.+
T Consensus 87 ~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~~~---- 162 (178)
T TIGR00730 87 HERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLKLI---- 162 (178)
T ss_pred HHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcCcE----
Confidence 355556666666667776643 11 35689999999999999999999988877
Q ss_pred ccCCCCCccccccccCHHHHHhhhc
Q 048802 125 ENNAEPTLNYPVYTLCVEEGRQVMG 149 (207)
Q Consensus 125 ~~~~~~~~n~P~Y~~s~eEv~~~i~ 149 (207)
....+++|+-+.|+
T Consensus 163 -----------~~~d~~~e~~~~i~ 176 (178)
T TIGR00730 163 -----------HVVSRPDELIEQVQ 176 (178)
T ss_pred -----------EEcCCHHHHHHHHH
Confidence 56889999888775
No 24
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=73.07 E-value=3.2 Score=38.97 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=16.2
Q ss_pred HHHHHHhhcccccccCceEEEE
Q 048802 63 DFTSFLKFWSEELKTGSRMVLN 84 (207)
Q Consensus 63 D~~~FL~~Ra~EL~~GG~mvl~ 84 (207)
++..+|+.-.+=|+|||+|++.
T Consensus 120 ~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 120 EVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred HHHHHHHHHHHhcCCCeEEEEE
Confidence 3566777677778899998774
No 25
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=70.03 E-value=11 Score=30.56 Aligned_cols=87 Identities=20% Similarity=0.210 Sum_probs=48.5
Q ss_pred HHHHHHHHhhcccccccCceEEEEeecCCCccccHHHHHHHHHHHHHH---cCCCchhhhhccccccccCCCCCccc---
Q 048802 61 ESDFTSFLKFWSEELKTGSRMVLNFIGNDKYHTGIFELLGMVLNDMVS---EGLIEESKLESFRLGFENNAEPTLNY--- 134 (207)
Q Consensus 61 ~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~l~~~l~dmv~---eGlI~eek~dsF~~~~~~~~~~~~n~--- 134 (207)
..|...+|+.-.+-|+|||++++.-.-.+.. ..+..+.+.+..... .+.... ..+++ ..
T Consensus 119 ~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------~~~~~ 183 (223)
T TIGR01934 119 VTDIQKALREMYRVLKPGGRLVILEFSKPAN--ALLKKFYKFYLKNVLPSIGGLISK-NAEAY------------TYLPE 183 (223)
T ss_pred cccHHHHHHHHHHHcCCCcEEEEEEecCCCc--hhhHHHHHHHHHHhhhhhhhhhcC-Cchhh------------HHHHH
Confidence 3567788999999999999999765433211 112222222222110 011110 11222 11
Q ss_pred -cccccCHHHHHhhhccCCceEEeEEeeee
Q 048802 135 -PVYTLCVEEGRQVMGSEGSFNIHQHETSH 163 (207)
Q Consensus 135 -P~Y~~s~eEv~~~i~~~gsF~I~~~E~~~ 163 (207)
..-+++.+|++++++..| |++.+.+...
T Consensus 184 ~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~ 212 (223)
T TIGR01934 184 SIRAFPSQEELAAMLKEAG-FEEVRYRSLT 212 (223)
T ss_pred HHHhCCCHHHHHHHHHHcC-Cccceeeeee
Confidence 112468999999999877 8877777654
No 26
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=69.96 E-value=15 Score=32.32 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=37.4
Q ss_pred HHHHHHHhhcccccccCceEEEEeecCCCccccHHHHHHHHHHHHHHcCCCchhhhhccccccccCCCCCcccc-ccccC
Q 048802 62 SDFTSFLKFWSEELKTGSRMVLNFIGNDKYHTGIFELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYP-VYTLC 140 (207)
Q Consensus 62 ~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~l~~~l~dmv~eGlI~eek~dsF~~~~~~~~~~~~n~P-~Y~~s 140 (207)
.++..+|+.-.+=|+|||++++.......... + ..| .+..+
T Consensus 200 ~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~--------------------------~------------~~p~~~~~~ 241 (287)
T PRK12335 200 ERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYP--------------------------C------------PMPFSFTFK 241 (287)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEecccccCC--------------------------C------------CCCCCcccC
Confidence 35667777767778999997765432211100 2 222 45678
Q ss_pred HHHHHhhhccCCceEEeEEe
Q 048802 141 VEEGRQVMGSEGSFNIHQHE 160 (207)
Q Consensus 141 ~eEv~~~i~~~gsF~I~~~E 160 (207)
.+|+++.+.. |+|.+.+
T Consensus 242 ~~el~~~~~~---~~i~~~~ 258 (287)
T PRK12335 242 EGELKDYYQD---WEIVKYN 258 (287)
T ss_pred HHHHHHHhCC---CEEEEEe
Confidence 9999999975 8887764
No 27
>PRK06202 hypothetical protein; Provisional
Probab=69.34 E-value=20 Score=30.16 Aligned_cols=28 Identities=4% Similarity=-0.044 Sum_probs=22.4
Q ss_pred cccCHHHHHhhhccCCceEEeEEeeeeccc
Q 048802 137 YTLCVEEGRQVMGSEGSFNIHQHETSHISW 166 (207)
Q Consensus 137 Y~~s~eEv~~~i~~~gsF~I~~~E~~~~~w 166 (207)
-.++.+|+++.+++ .|+|.+.-.|...|
T Consensus 200 ~~~~~~el~~ll~~--Gf~~~~~~~~~~~~ 227 (232)
T PRK06202 200 RSYTPAELAALAPQ--GWRVERQWPFRYLL 227 (232)
T ss_pred hhcCHHHHHHHhhC--CCeEEeccceeeEE
Confidence 35799999999998 69988887776554
No 28
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=67.80 E-value=8.9 Score=31.81 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=45.6
Q ss_pred HHHHHHHhhcccccccCceEEEEeecCCCccccHHHHHHHHHHHHHHcCCCchhhhhccccccccCCCCCccccccccCH
Q 048802 62 SDFTSFLKFWSEELKTGSRMVLNFIGNDKYHTGIFELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLCV 141 (207)
Q Consensus 62 ~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~l~~~l~dmv~eGlI~eek~dsF~~~~~~~~~~~~n~P~Y~~s~ 141 (207)
.|+..+|+.=++=|+|||++++.-+..... + ..+.- ..+.|.++.
T Consensus 81 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---------------------~--~~~~~------------~~~~~~~s~ 125 (224)
T smart00828 81 KDKMDLFSNISRHLKDGGHLVLADFIANLL---------------------S--AIEHE------------ETTSYLVTR 125 (224)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEEcccccC---------------------c--ccccc------------ccccccCCH
Confidence 567888888889999999999875422110 0 00011 234568899
Q ss_pred HHHHhhhccCCceEEeEEeeeec
Q 048802 142 EEGRQVMGSEGSFNIHQHETSHI 164 (207)
Q Consensus 142 eEv~~~i~~~gsF~I~~~E~~~~ 164 (207)
+|+.+.+++.| |++.+.+.+..
T Consensus 126 ~~~~~~l~~~G-f~~~~~~~~~~ 147 (224)
T smart00828 126 EEWAELLARNN-LRVVEGVDASL 147 (224)
T ss_pred HHHHHHHHHCC-CeEEEeEECcH
Confidence 99999998765 88877776543
No 29
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=65.55 E-value=6.4 Score=34.44 Aligned_cols=26 Identities=12% Similarity=0.048 Sum_probs=20.2
Q ss_pred HHHHHHhhcccccccCceEEEEeecC
Q 048802 63 DFTSFLKFWSEELKTGSRMVLNFIGN 88 (207)
Q Consensus 63 D~~~FL~~Ra~EL~~GG~mvl~~~g~ 88 (207)
|...+|+.=++=|+|||+++++-...
T Consensus 134 d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 134 DKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 56667777778899999999876544
No 30
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=62.37 E-value=8.8 Score=29.12 Aligned_cols=42 Identities=12% Similarity=0.347 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHcCCCchhhhhccccccccCCCCCccccccccCHHHHHhhhc
Q 048802 95 IFELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVMG 149 (207)
Q Consensus 95 ~~~~l~~~l~dmv~eGlI~eek~dsF~~~~~~~~~~~~n~P~Y~~s~eEv~~~i~ 149 (207)
+...+..+|+.|-..|.|++++-|+. ..|+++|+. ..|.+++
T Consensus 12 l~~~V~~~Ld~ll~~G~is~~Ecd~I------------r~p~~T~sq-qARrLLD 53 (81)
T cd08788 12 LQHHVDGALELLLTRGFFSSYDCDEI------------RLPIFTPSQ-QARRLLD 53 (81)
T ss_pred HHHHHHHHHHHHHHcCCccHhhcchh------------hcCCCChHH-HHHHHHH
Confidence 44668899999999999999999999 999999874 4555555
No 31
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=60.85 E-value=11 Score=31.35 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=15.8
Q ss_pred cccCHHHHHhhhccCCceEEeEEe
Q 048802 137 YTLCVEEGRQVMGSEGSFNIHQHE 160 (207)
Q Consensus 137 Y~~s~eEv~~~i~~~gsF~I~~~E 160 (207)
+..+.+|+++.++ | |.+.+.+
T Consensus 149 ~~~~~~el~~~~~--~-~~~~~~~ 169 (197)
T PRK11207 149 FAFKEGELRRYYE--G-WEMVKYN 169 (197)
T ss_pred CccCHHHHHHHhC--C-CeEEEee
Confidence 5678899998887 3 7776664
No 32
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=60.81 E-value=10 Score=31.49 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=17.1
Q ss_pred cccCHHHHHhhhccCCceEEeEEee
Q 048802 137 YTLCVEEGRQVMGSEGSFNIHQHET 161 (207)
Q Consensus 137 Y~~s~eEv~~~i~~~gsF~I~~~E~ 161 (207)
|..+.+|+++.+.. |+|.+.+-
T Consensus 148 ~~~~~~el~~~f~~---~~~~~~~e 169 (195)
T TIGR00477 148 FTFKEDELRQYYAD---WELLKYNE 169 (195)
T ss_pred ccCCHHHHHHHhCC---CeEEEeec
Confidence 56789999998863 88777763
No 33
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=60.40 E-value=8.2 Score=27.77 Aligned_cols=15 Identities=33% Similarity=0.273 Sum_probs=7.9
Q ss_pred Cccceeecccccccc
Q 048802 6 CFLNLVYSSFCHHWL 20 (207)
Q Consensus 6 ~Slh~~~Ss~alHWL 20 (207)
++.|+++++.++||+
T Consensus 65 ~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 65 ESFDLVVASNVLHHL 79 (99)
T ss_dssp ---SEEEEE-TTS--
T ss_pred cccceehhhhhHhhh
Confidence 588888888888887
No 34
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=59.26 E-value=22 Score=30.14 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=18.7
Q ss_pred HHHHHhhcccccccCceEEEEeec
Q 048802 64 FTSFLKFWSEELKTGSRMVLNFIG 87 (207)
Q Consensus 64 ~~~FL~~Ra~EL~~GG~mvl~~~g 87 (207)
....|+.-.+=|+|||++++....
T Consensus 144 ~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 144 VELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred HHHHHHHHHHHcCCCCEEEEEEec
Confidence 356777778889999999995543
No 35
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=57.39 E-value=21 Score=32.70 Aligned_cols=78 Identities=12% Similarity=0.037 Sum_probs=44.3
Q ss_pred HHHHHHHhhcccccccCceEEEEeecCCCccccHHHHH-HHHHHHHHHcCCCchhhhhccccccccCCCCCccccccccC
Q 048802 62 SDFTSFLKFWSEELKTGSRMVLNFIGNDKYHTGIFELL-GMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLC 140 (207)
Q Consensus 62 ~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~l-~~~l~dmv~eGlI~eek~dsF~~~~~~~~~~~~n~P~Y~~s 140 (207)
.|...||+.=++=|+|||++++..+.+... ......+ ..-+...+..| . .....+.+
T Consensus 212 ~d~~~~L~~l~r~LkPGG~liist~nr~~~-~~~~~i~~~eyi~~~lp~g---------t------------h~~~~f~t 269 (322)
T PLN02396 212 ANPAEFCKSLSALTIPNGATVLSTINRTMR-AYASTIVGAEYILRWLPKG---------T------------HQWSSFVT 269 (322)
T ss_pred CCHHHHHHHHHHHcCCCcEEEEEECCcCHH-HHHHhhhhHHHHHhcCCCC---------C------------cCccCCCC
Confidence 356677777777899999999998765311 0000000 01111111111 0 11123579
Q ss_pred HHHHHhhhccCCceEEeEEeee
Q 048802 141 VEEGRQVMGSEGSFNIHQHETS 162 (207)
Q Consensus 141 ~eEv~~~i~~~gsF~I~~~E~~ 162 (207)
++|+++.++..| |+|..+.-+
T Consensus 270 p~eL~~lL~~aG-f~i~~~~G~ 290 (322)
T PLN02396 270 PEELSMILQRAS-VDVKEMAGF 290 (322)
T ss_pred HHHHHHHHHHcC-CeEEEEeee
Confidence 999999999876 776655443
No 36
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=53.67 E-value=12 Score=22.90 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=16.4
Q ss_pred HHHHHHHHcCCCchhhhhc
Q 048802 101 MVLNDMVSEGLIEESKLES 119 (207)
Q Consensus 101 ~~l~dmv~eGlI~eek~ds 119 (207)
..|.+|-..|+|++++.+.
T Consensus 6 ~~L~~l~~~G~IseeEy~~ 24 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYEQ 24 (31)
T ss_pred HHHHHHHHcCCCCHHHHHH
Confidence 4688999999999999865
No 37
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=53.24 E-value=22 Score=29.79 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=27.7
Q ss_pred HHHHhhcccccccCceEEEEeecCCCccccHHHHHHHHHHHHHHcCCCch
Q 048802 65 TSFLKFWSEELKTGSRMVLNFIGNDKYHTGIFELLGMVLNDMVSEGLIEE 114 (207)
Q Consensus 65 ~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~l~~~l~dmv~eGlI~e 114 (207)
..||+.=++=|+|||++++.... .+.+...+..|.+.|+-.+
T Consensus 136 ~~~l~~i~~~LkpgG~l~i~~~~--------~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 136 PEFLALYARKLKPGGEIHFATDW--------EGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred HHHHHHHHHHcCCCCEEEEEcCC--------HHHHHHHHHHHHhCccccc
Confidence 34454445667899999987532 3455667777887886444
No 38
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=51.56 E-value=19 Score=24.72 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=19.1
Q ss_pred ccHHHHHHHHHHHHHHcCCCchhhh
Q 048802 93 TGIFELLGMVLNDMVSEGLIEESKL 117 (207)
Q Consensus 93 ~~~~~~l~~~l~dmv~eGlI~eek~ 117 (207)
+.+=..|.++|+||+.+|.|+++-.
T Consensus 9 stlG~aL~dtLDeli~~~~I~p~La 33 (49)
T PF02268_consen 9 STLGIALTDTLDELIQEGKITPQLA 33 (49)
T ss_dssp SHHHHHHHHHHHHHHHTTSS-HHHH
T ss_pred chHHHHHHHHHHHHHHcCCCCHHHH
Confidence 3344678999999999999998643
No 39
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=50.33 E-value=33 Score=32.01 Aligned_cols=72 Identities=15% Similarity=0.240 Sum_probs=46.2
Q ss_pred HHHHHHHhhcccccccCceEEEEeecCCCccccHHHHHHHHHHHHHHcCCCchhhhhccccccccCCCCCcccc-ccccC
Q 048802 62 SDFTSFLKFWSEELKTGSRMVLNFIGNDKYHTGIFELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYP-VYTLC 140 (207)
Q Consensus 62 ~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~l~~~l~dmv~eGlI~eek~dsF~~~~~~~~~~~~n~P-~Y~~s 140 (207)
+++..+++.=.+=|+|||++++..++.+.... ....-++.+ -.| -+.|+
T Consensus 244 ~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~------------------~~~~~i~~y------------ifp~g~lps 293 (383)
T PRK11705 244 KNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDT------------------NVDPWINKY------------IFPNGCLPS 293 (383)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEccCCCCCC------------------CCCCCceee------------ecCCCcCCC
Confidence 44556666666778999999998877652200 001112344 455 36789
Q ss_pred HHHHHhhhccCCceEEeEEeeeecc
Q 048802 141 VEEGRQVMGSEGSFNIHQHETSHIS 165 (207)
Q Consensus 141 ~eEv~~~i~~~gsF~I~~~E~~~~~ 165 (207)
++++.+..+. .|+|..++.+-..
T Consensus 294 ~~~i~~~~~~--~~~v~d~~~~~~h 316 (383)
T PRK11705 294 VRQIAQASEG--LFVMEDWHNFGAD 316 (383)
T ss_pred HHHHHHHHHC--CcEEEEEecChhh
Confidence 9999988773 4999888876443
No 40
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=49.25 E-value=15 Score=26.88 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=20.7
Q ss_pred HHHHHHHhhcccccccCceEEEEee
Q 048802 62 SDFTSFLKFWSEELKTGSRMVLNFI 86 (207)
Q Consensus 62 ~D~~~FL~~Ra~EL~~GG~mvl~~~ 86 (207)
.++..+++.=.+-|+|||++++++.
T Consensus 99 ~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 99 GLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred hhHHHHHHHHHHHcCCCCEEEEEec
Confidence 3456888888899999999999874
No 41
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=48.78 E-value=23 Score=28.05 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=33.8
Q ss_pred ccHHHHHHHHHHHHHHcCCCchhhhhccccccccCCCCCccccccccCHHHHHhhh
Q 048802 93 TGIFELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVM 148 (207)
Q Consensus 93 ~~~~~~l~~~l~dmv~eGlI~eek~dsF~~~~~~~~~~~~n~P~Y~~s~eEv~~~i 148 (207)
.++|+-+-+-++.|+.+|.|+++..+.+ ..+.+++|+-+.|
T Consensus 93 ~g~w~~l~~~l~~~~~~g~i~~~~~~~~---------------~~~d~~~e~~~~i 133 (133)
T PF03641_consen 93 DGFWDPLLEFLDRMIEEGFISPDDLDLL---------------HFVDDPEEALEYI 133 (133)
T ss_dssp GGCCHHHHHHHHHHHHTTSSSHHHHCCE---------------EEESSHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHCCCCCHHHCCeE---------------EEeCCHHHHHhhC
Confidence 3588888899999999999999988766 7788888876543
No 42
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=46.03 E-value=13 Score=27.01 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.2
Q ss_pred HHHHHHHhhcccccccCceEEEEe
Q 048802 62 SDFTSFLKFWSEELKTGSRMVLNF 85 (207)
Q Consensus 62 ~D~~~FL~~Ra~EL~~GG~mvl~~ 85 (207)
.+...+|+.-.+-|+|||++++.-
T Consensus 88 ~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 88 DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 667777888889999999999864
No 43
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=45.25 E-value=31 Score=30.20 Aligned_cols=30 Identities=33% Similarity=0.616 Sum_probs=25.0
Q ss_pred cEEEeccCCCccHHHHHHHHHHHHHHHHHhhcccccccCceEEEEee
Q 048802 40 DVCLAKIYNPPSVPKVYFDQFESDFTSFLKFWSEELKTGSRMVLNFI 86 (207)
Q Consensus 40 ~i~~~~~~s~~~v~~ay~~Qf~~D~~~FL~~Ra~EL~~GG~mvl~~~ 86 (207)
.|+++.+ .++++++..+| |++||+||+-.-
T Consensus 141 ~I~Vtaa--a~~vP~~Ll~Q---------------L~~gGrlv~PvG 170 (209)
T COG2518 141 RIIVTAA--APEVPEALLDQ---------------LKPGGRLVIPVG 170 (209)
T ss_pred EEEEeec--cCCCCHHHHHh---------------cccCCEEEEEEc
Confidence 6888775 78899999877 789999998765
No 44
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=44.48 E-value=22 Score=31.89 Aligned_cols=53 Identities=30% Similarity=0.461 Sum_probs=34.2
Q ss_pred ccccccCceEEEEeecCCCccccHHHHHHHHHHHHHHcCCCchhhhhccccccccCCCCCccccccccCHHHHHhhhccC
Q 048802 72 SEELKTGSRMVLNFIGNDKYHTGIFELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSE 151 (207)
Q Consensus 72 a~EL~~GG~mvl~~~g~~~~~~~~~~~l~~~l~dmv~eGlI~eek~dsF~~~~~~~~~~~~n~P~Y~~s~eEv~~~i~~~ 151 (207)
+.=|+|||.|++..+-+..+. |+ -.= .+|.+..+.+.|++++++.
T Consensus 186 ~~lLkpGG~Lil~~~l~~t~Y-------------~v----------G~~------------~F~~l~l~ee~v~~al~~a 230 (256)
T PF01234_consen 186 SSLLKPGGHLILAGVLGSTYY-------------MV----------GGH------------KFPCLPLNEEFVREALEEA 230 (256)
T ss_dssp HTTEEEEEEEEEEEESS-SEE-------------EE----------TTE------------EEE---B-HHHHHHHHHHT
T ss_pred HHHcCCCcEEEEEEEcCceeE-------------EE----------CCE------------ecccccCCHHHHHHHHHHc
Confidence 445999999999987554220 01 011 4588889999999999977
Q ss_pred CceEEeEEe
Q 048802 152 GSFNIHQHE 160 (207)
Q Consensus 152 gsF~I~~~E 160 (207)
| |+|...+
T Consensus 231 G-~~i~~~~ 238 (256)
T PF01234_consen 231 G-FDIEDLE 238 (256)
T ss_dssp T-EEEEEEE
T ss_pred C-CEEEecc
Confidence 6 5888888
No 45
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=44.21 E-value=9 Score=24.34 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=9.0
Q ss_pred cccccCHHHHHhhhc
Q 048802 135 PVYTLCVEEGRQVMG 149 (207)
Q Consensus 135 P~Y~~s~eEv~~~i~ 149 (207)
|+|.||.||++..+.
T Consensus 1 Pvf~Pt~eEF~dp~~ 15 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIK 15 (34)
T ss_dssp EEE---HHHHS-HHH
T ss_pred CcccCCHHHHhCHHH
Confidence 789999999987764
No 46
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=44.10 E-value=21 Score=31.42 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=11.6
Q ss_pred HHHhhcccccccCceEEE
Q 048802 66 SFLKFWSEELKTGSRMVL 83 (207)
Q Consensus 66 ~FL~~Ra~EL~~GG~mvl 83 (207)
..|+.=++=|+|||.+++
T Consensus 223 ~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 223 KLLNRFAEALKPGGYLFL 240 (264)
T ss_pred HHHHHHHHHhCCCeEEEE
Confidence 333444456789999876
No 47
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=42.97 E-value=23 Score=28.88 Aligned_cols=70 Identities=21% Similarity=0.242 Sum_probs=39.5
Q ss_pred CCccHHHHHHHHHHHHHHHHHhhcccccccCceEEEEeecCCCc----cccHHHHHHHHHHHHHHcCCCchhhh
Q 048802 48 NPPSVPKVYFDQFESDFTSFLKFWSEELKTGSRMVLNFIGNDKY----HTGIFELLGMVLNDMVSEGLIEESKL 117 (207)
Q Consensus 48 s~~~v~~ay~~Qf~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~----~~~~~~~l~~~l~dmv~eGlI~eek~ 117 (207)
+|..+...|.+||++||-.-|+-|.-+=+...--|=+=.-++.. ...-|..|..=..-|..+|++.-++-
T Consensus 9 n~~k~i~~yS~eFe~~Fl~lLr~~hg~krV~AN~vYnEyI~Dk~HvHMNaT~W~sLT~FvkyLgr~G~~~Vdet 82 (127)
T PF10357_consen 9 NPGKFIDEYSEEFEKDFLRLLRRRHGTKRVNANKVYNEYIQDKDHVHMNATRWTSLTEFVKYLGREGKCKVDET 82 (127)
T ss_dssp -GGG-HHHHHHHHHHHHHHHHHHHTSS-EEEHHHHHHHHTTSS----GGGSS-SSHHHHHHHHTTTTSEEEEEE
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHhcCCCeechhHHHHHHhcCccceeecccccchHHHHHHHHhhCCeeEeecC
Confidence 57788999999999999999997764432211000000001111 23456667777777777777665443
No 48
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=42.78 E-value=30 Score=32.50 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=17.1
Q ss_pred HHHhhcccccccCceEEEEeecCC
Q 048802 66 SFLKFWSEELKTGSRMVLNFIGND 89 (207)
Q Consensus 66 ~FL~~Ra~EL~~GG~mvl~~~g~~ 89 (207)
.+|+.=++=|+|||++++....+.
T Consensus 350 ~~l~~~~r~LkpgG~l~i~~~~~~ 373 (475)
T PLN02336 350 ALFRSFFKWLKPGGKVLISDYCRS 373 (475)
T ss_pred HHHHHHHHHcCCCeEEEEEEeccC
Confidence 334444556899999999987664
No 49
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=42.32 E-value=14 Score=33.86 Aligned_cols=68 Identities=29% Similarity=0.423 Sum_probs=48.2
Q ss_pred HHHHHHHhhcccccccCceEEEEeecCCC-c-cccHHHHHHHHHHHHHHcCCCchhhhhccccccccCCCCCcccccccc
Q 048802 62 SDFTSFLKFWSEELKTGSRMVLNFIGNDK-Y-HTGIFELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTL 139 (207)
Q Consensus 62 ~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~-~-~~~~~~~l~~~l~dmv~eGlI~eek~dsF~~~~~~~~~~~~n~P~Y~~ 139 (207)
+|...||.+=++=|+|||+++++-+-|.. + ...+| +-..+++ .|-.|.-. .++| .
T Consensus 172 ~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~-~~E~vl~-ivp~Gth~---~ekf------------------i 228 (282)
T KOG1270|consen 172 KDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIF-LAEIVLR-IVPKGTHT---WEKF------------------I 228 (282)
T ss_pred hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhcccc-HHHHHHH-hcCCCCcC---HHHc------------------C
Confidence 68999999999999999999999998872 2 33332 1123333 66666433 2334 7
Q ss_pred CHHHHHhhhccCC
Q 048802 140 CVEEGRQVMGSEG 152 (207)
Q Consensus 140 s~eEv~~~i~~~g 152 (207)
+++|+..+.+.++
T Consensus 229 ~p~e~~~~l~~~~ 241 (282)
T KOG1270|consen 229 NPEELTSILNANG 241 (282)
T ss_pred CHHHHHHHHHhcC
Confidence 8899999998873
No 50
>PRK05785 hypothetical protein; Provisional
Probab=40.27 E-value=10 Score=32.54 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=19.0
Q ss_pred cCCCccceeecccccccccCCCc
Q 048802 3 FLPCFLNLVYSSFCHHWLSRVPT 25 (207)
Q Consensus 3 fP~~Slh~~~Ss~alHWLS~vP~ 25 (207)
||++|.|.++|++++||+...+.
T Consensus 106 ~~d~sfD~v~~~~~l~~~~d~~~ 128 (226)
T PRK05785 106 FRDKSFDVVMSSFALHASDNIEK 128 (226)
T ss_pred CCCCCEEEEEecChhhccCCHHH
Confidence 67999999999999999765433
No 51
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=38.81 E-value=69 Score=29.34 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=41.1
Q ss_pred HHHHHHHhhcccccccCceEEEEeecCCCccccHHHHHHHHHHHHHHcCCCchhhhhccccccccCCCCCccccccccCH
Q 048802 62 SDFTSFLKFWSEELKTGSRMVLNFIGNDKYHTGIFELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLCV 141 (207)
Q Consensus 62 ~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~l~~~l~dmv~eGlI~eek~dsF~~~~~~~~~~~~n~P~Y~~s~ 141 (207)
.|-..+|+.=++=|+|||+||+..+..+..... .+...+....+ .-..+.||.
T Consensus 202 ~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~---------------~l~p~~ry~k~------------~nv~flpS~ 254 (314)
T TIGR00452 202 KSPLEHLKQLKHQLVIKGELVLETLVIDGDLNT---------------VLVPKDRYAKM------------KNVYFIPSV 254 (314)
T ss_pred CCHHHHHHHHHHhcCCCCEEEEEEEEecCcccc---------------ccCchHHHHhc------------cccccCCCH
Confidence 456667777778899999999876543211000 01111122223 222356799
Q ss_pred HHHHhhhccCCceEEeEE
Q 048802 142 EEGRQVMGSEGSFNIHQH 159 (207)
Q Consensus 142 eEv~~~i~~~gsF~I~~~ 159 (207)
+++...+++.| |+..++
T Consensus 255 ~~L~~~L~~aG-F~~V~i 271 (314)
T TIGR00452 255 SALKNWLEKVG-FENFRI 271 (314)
T ss_pred HHHHHHHHHCC-CeEEEE
Confidence 99999999877 444433
No 52
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=35.53 E-value=36 Score=30.53 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=40.0
Q ss_pred cccccccEEEeccCCCccHHHHHHHHHHHHHHHHHhhcccccccCceEEEEe
Q 048802 34 HLLNKRDVCLAKIYNPPSVPKVYFDQFESDFTSFLKFWSEELKTGSRMVLNF 85 (207)
Q Consensus 34 ~~~Nkg~i~~~~~~s~~~v~~ay~~Qf~~D~~~FL~~Ra~EL~~GG~mvl~~ 85 (207)
|+|++.... . ++...++-.+-+..-++..+++.=++=|++||++.++.
T Consensus 123 PPyf~~~~~--~--~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 123 PPYFKQGSR--L--NENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred CCCCCCccc--c--CcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 788877665 1 45667788888899999999999999999999998877
No 53
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=34.70 E-value=23 Score=29.93 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=16.4
Q ss_pred cCCCccceeeccccccccc
Q 048802 3 FLPCFLNLVYSSFCHHWLS 21 (207)
Q Consensus 3 fP~~Slh~~~Ss~alHWLS 21 (207)
||+++.|++++..+||+++
T Consensus 101 ~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 101 FKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CCCCCEEEEEECChhhhCC
Confidence 6788999999999998774
No 54
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=34.05 E-value=15 Score=33.33 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=15.6
Q ss_pred CCCccceeecccccccc
Q 048802 4 LPCFLNLVYSSFCHHWL 20 (207)
Q Consensus 4 P~~Slh~~~Ss~alHWL 20 (207)
+++|||++.+.-|+||.
T Consensus 97 ~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 97 GEESVDLITAAQAVHWF 113 (261)
T ss_pred CCcceeeehhhhhHHhh
Confidence 58999999999999994
No 55
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=33.51 E-value=34 Score=24.19 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCce
Q 048802 54 KVYFDQFESDFTSFLKFWSEELKTGSR 80 (207)
Q Consensus 54 ~ay~~Qf~~D~~~FL~~Ra~EL~~GG~ 80 (207)
+.|.+-|++||..++...+.+|+.-|.
T Consensus 13 ~~~~~kf~~~w~~lf~~~s~~LK~~GI 39 (57)
T PF09597_consen 13 EEHAEKFESDWEKLFTTSSKQLKELGI 39 (57)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHCCC
Confidence 677888999999999999999998874
No 56
>PRK04266 fibrillarin; Provisional
Probab=33.34 E-value=92 Score=26.94 Aligned_cols=47 Identities=13% Similarity=0.053 Sum_probs=28.4
Q ss_pred HHhhcccccccCceEEEEeecCCCc-cccHHHHHHHHHHHHHHcCCCc
Q 048802 67 FLKFWSEELKTGSRMVLNFIGNDKY-HTGIFELLGMVLNDMVSEGLIE 113 (207)
Q Consensus 67 FL~~Ra~EL~~GG~mvl~~~g~~~~-~~~~~~~l~~~l~dmv~eGlI~ 113 (207)
+|+.=.+-|+|||++++++..+... ...........+..|.+.|+-.
T Consensus 158 ~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~ 205 (226)
T PRK04266 158 AIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEI 205 (226)
T ss_pred HHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeE
Confidence 4545455699999999998776522 1111233355566666667543
No 57
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=32.79 E-value=25 Score=23.28 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=14.0
Q ss_pred ccccccCHHHHHhhhc
Q 048802 134 YPVYTLCVEEGRQVMG 149 (207)
Q Consensus 134 ~P~Y~~s~eEv~~~i~ 149 (207)
+|++.||.+|++..+.
T Consensus 2 iPvf~Pt~eEF~Dp~~ 17 (42)
T smart00545 2 IPVFYPTMEEFKDPLA 17 (42)
T ss_pred CCeEcCCHHHHHCHHH
Confidence 6999999999988765
No 58
>PRK11524 putative methyltransferase; Provisional
Probab=32.33 E-value=61 Score=28.64 Aligned_cols=73 Identities=12% Similarity=0.001 Sum_probs=37.4
Q ss_pred ccceeecccccccccCCCccccc-hhcccccccccEEEeccCCCccHHHHHHHHHHHHHHHHHhhcccccccCceEEEEe
Q 048802 7 FLNLVYSSFCHHWLSRVPTELVS-ERRIHLLNKRDVCLAKIYNPPSVPKVYFDQFESDFTSFLKFWSEELKTGSRMVLNF 85 (207)
Q Consensus 7 Slh~~~Ss~alHWLS~vP~~l~~-~~~s~~~Nkg~i~~~~~~s~~~v~~ay~~Qf~~D~~~FL~~Ra~EL~~GG~mvl~~ 85 (207)
..|-++..-|+.++.++|.+-.| ---+|+||.+.-|.... ..-..+.|. .-+..+|+.=.+=|++||.|++..
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~--~~~~~~~~~----~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLI--EAWKEDLFI----DWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCccccccccccc--ccccHHHHH----HHHHHHHHHHHHHhCCCcEEEEEc
Confidence 45566677777877777654211 01127777543221111 110112222 223445555555679999999864
No 59
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=32.24 E-value=33 Score=29.18 Aligned_cols=34 Identities=26% Similarity=0.236 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHcCCCchhhhhccccccccCCCCCccccccccCH
Q 048802 96 FELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLCV 141 (207)
Q Consensus 96 ~~~l~~~l~dmv~eGlI~eek~dsF~~~~~~~~~~~~n~P~Y~~s~ 141 (207)
--.+.+++..||.+|+|.-+|+-+- |+=.-+|+.
T Consensus 29 ~~~VKdvlq~LvDDglV~~EKiGss------------n~YWsFps~ 62 (188)
T PF03962_consen 29 SMSVKDVLQSLVDDGLVHVEKIGSS------------NYYWSFPSQ 62 (188)
T ss_pred hhhHHHHHHHHhccccchhhhccCe------------eEEEecChH
Confidence 4578999999999999999999999 887777764
No 60
>KOG3463 consensus Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=30.92 E-value=47 Score=26.51 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHcCCCchhhhhccccccccCCCCCccccccccCHHH-HHhhhccCCceEEeEEeeee
Q 048802 96 FELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLCVEE-GRQVMGSEGSFNIHQHETSH 163 (207)
Q Consensus 96 ~~~l~~~l~dmv~eGlI~eek~dsF~~~~~~~~~~~~n~P~Y~~s~eE-v~~~i~~~gsF~I~~~E~~~ 163 (207)
=..|..+|.||+++|.|+.+-.-.- +-.|..|+-| +.+-+.+.=+|+ .++.+..
T Consensus 13 G~~L~~tLDe~v~~g~itp~la~~V-------------L~~FDKSi~~al~~~vk~kmsfk-g~L~tYr 67 (109)
T KOG3463|consen 13 GNALQKTLDELVSDGVITPSLAKKV-------------LEQFDKSINEALNDKVKNKMSFK-GKLDTYR 67 (109)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHH-------------HHHHHHHHHHHHHHhcccceeee-eccceee
Confidence 3568899999999999998653222 2222344443 444444555788 7777754
No 61
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=30.86 E-value=23 Score=26.87 Aligned_cols=55 Identities=9% Similarity=0.212 Sum_probs=29.8
Q ss_pred HHcCCCchhhhhccccccccCC--CCCccccccccCHHHHHhhhccCCceEEeEEee
Q 048802 107 VSEGLIEESKLESFRLGFENNA--EPTLNYPVYTLCVEEGRQVMGSEGSFNIHQHET 161 (207)
Q Consensus 107 v~eGlI~eek~dsF~~~~~~~~--~~~~n~P~Y~~s~eEv~~~i~~~gsF~I~~~E~ 161 (207)
+.+|-|+.++..+.-...+... +-++.++...++++++.+.++..+-|+|-+=..
T Consensus 2 ~~d~~~~~~~F~~~W~sl~~~~~~e~~~~~~~~~~~~~~i~~~L~~~nI~~iA~~~~ 58 (114)
T PF09066_consen 2 VEDGSMDPEEFQEMWKSLPDSNQQELSIQLNASVPSPDAIEEKLQANNIFTIASGKV 58 (114)
T ss_dssp -TT----HHHHHHHHHHS-GGG--EEEEEETT----HHHHHHHHHCTT-EEEEEEEC
T ss_pred CCCCccCHHHHHHHHHhCCcccceEEEEeccccCCcHHHHHHHHHHCCEEEEecCCC
Confidence 3455566666555544444444 444566677889999999999999999866544
No 62
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=30.45 E-value=52 Score=29.53 Aligned_cols=30 Identities=23% Similarity=0.484 Sum_probs=23.7
Q ss_pred cEEEeccCCCccHHHHHHHHHHHHHHHHHhhcccccccCceEEEEee
Q 048802 40 DVCLAKIYNPPSVPKVYFDQFESDFTSFLKFWSEELKTGSRMVLNFI 86 (207)
Q Consensus 40 ~i~~~~~~s~~~v~~ay~~Qf~~D~~~FL~~Ra~EL~~GG~mvl~~~ 86 (207)
.||+.. ..+.+.+.|.+| |++||+|++...
T Consensus 165 aIhvGA--aa~~~pq~l~dq---------------L~~gGrllip~~ 194 (237)
T KOG1661|consen 165 AIHVGA--AASELPQELLDQ---------------LKPGGRLLIPVG 194 (237)
T ss_pred eEEEcc--CccccHHHHHHh---------------hccCCeEEEeec
Confidence 578864 467789999877 689999998764
No 63
>PRK13699 putative methylase; Provisional
Probab=30.26 E-value=60 Score=28.09 Aligned_cols=14 Identities=29% Similarity=0.252 Sum_probs=10.2
Q ss_pred ccccccCceEEEEe
Q 048802 72 SEELKTGSRMVLNF 85 (207)
Q Consensus 72 a~EL~~GG~mvl~~ 85 (207)
.+=|+|||.|++.+
T Consensus 59 ~RVLKpgg~l~if~ 72 (227)
T PRK13699 59 YRVLKKDALMVSFY 72 (227)
T ss_pred HHHcCCCCEEEEEe
Confidence 35689999887643
No 64
>PRK01060 endonuclease IV; Provisional
Probab=29.51 E-value=3.3e+02 Score=23.25 Aligned_cols=86 Identities=13% Similarity=0.154 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCceEEEEeecCCCc---cccHHHHHHHHHHHHHHcCCCchhhhhccccccccCCCC
Q 048802 54 KVYFDQFESDFTSFLKFWSEELKTGSRMVLNFIGNDKY---HTGIFELLGMVLNDMVSEGLIEESKLESFRLGFENNAEP 130 (207)
Q Consensus 54 ~ay~~Qf~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~---~~~~~~~l~~~l~dmv~eGlI~eek~dsF~~~~~~~~~~ 130 (207)
+.+++...+.+..-++. |++| |...|++..|.... ....|+.+..+|+.++++. ...++.+||-+..
T Consensus 81 ~~~r~~s~~~~~~~i~~-A~~l--ga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~~~-------~gv~l~iEn~~~~ 150 (281)
T PRK01060 81 KEILEKSRDFLIQEIER-CAAL--GAKLLVFHPGSHLGDIDEEDCLARIAESLNEALDKT-------QGVTIVLENTAGQ 150 (281)
T ss_pred HHHHHHHHHHHHHHHHH-HHHc--CCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHhcC-------CCCEEEEecCCCC
Confidence 34555555566666654 6777 44466666776421 2347888888998886531 2367888885432
Q ss_pred CccccccccCHHHHHhhhccCC
Q 048802 131 TLNYPVYTLCVEEGRQVMGSEG 152 (207)
Q Consensus 131 ~~n~P~Y~~s~eEv~~~i~~~g 152 (207)
. -.+..+++++.++++.-+
T Consensus 151 ~---~~~~~~~~~~~~l~~~v~ 169 (281)
T PRK01060 151 G---SELGRRFEELARIIDGVE 169 (281)
T ss_pred C---CcccCCHHHHHHHHHhcC
Confidence 2 124467888888887543
No 65
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=27.72 E-value=87 Score=25.15 Aligned_cols=51 Identities=16% Similarity=0.047 Sum_probs=23.2
Q ss_pred ccccccccEEEec-cCCCccHHHHHHHHHHHHHHHHHhhcccccccCceEEEEeec
Q 048802 33 IHLLNKRDVCLAK-IYNPPSVPKVYFDQFESDFTSFLKFWSEELKTGSRMVLNFIG 87 (207)
Q Consensus 33 s~~~Nkg~i~~~~-~~s~~~v~~ay~~Qf~~D~~~FL~~Ra~EL~~GG~mvl~~~g 87 (207)
+|+||-+.-+... .+....-.+.|. +-+..+|+.=.+=|+|||.|++.+-.
T Consensus 7 DPPY~~~~~~~~~~~~~~~~~~~~y~----~~~~~~~~~~~rvLk~~g~~~i~~~~ 58 (231)
T PF01555_consen 7 DPPYNIGKDYNNYFDYGDNKNHEEYL----EWMEEWLKECYRVLKPGGSIFIFIDD 58 (231)
T ss_dssp ---TSSSCS-----CSCHCCHHHHHH----HHHHHHHHHHHHHEEEEEEEEEEE-C
T ss_pred CCCCCCCCCcchhhhccCCCCHHHHH----HHHHHHHHHHHhhcCCCeeEEEEecc
Confidence 3788866552100 001112234444 33444444444558999999887643
No 66
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=27.58 E-value=77 Score=32.47 Aligned_cols=69 Identities=17% Similarity=0.356 Sum_probs=42.6
Q ss_pred EEEeccCCCccHHHH------HHHHHHHHHHHHHhhcccccccCceEEEEeecCC----Cc-cc-cHHHHHH-------H
Q 048802 41 VCLAKIYNPPSVPKV------YFDQFESDFTSFLKFWSEELKTGSRMVLNFIGND----KY-HT-GIFELLG-------M 101 (207)
Q Consensus 41 i~~~~~~s~~~v~~a------y~~Qf~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~----~~-~~-~~~~~l~-------~ 101 (207)
||+.+- +|++|.+| |++||+||.-.=|.|=-+ .|.. |+ .. -+|.-+. .
T Consensus 390 iHVNGD-~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRr------------wgHnelddp~ftspvmyk~v~aReSvPdl 456 (913)
T KOG0451|consen 390 IHVNGD-DPEEVVRATRLAFRYQREFRKDVFIDLNCFRR------------WGHNELDDPTFTSPVMYKEVEARESVPDL 456 (913)
T ss_pred EEeCCC-CHHHHHHHHHHHHHHHHHhhhhheeehHHHHH------------hccccccCccccChhHHHHHHhhhcccHH
Confidence 556554 78888775 999999986443332111 2221 33 22 2343332 2
Q ss_pred HHHHHHHcCCCchhhhhcccc
Q 048802 102 VLNDMVSEGLIEESKLESFRL 122 (207)
Q Consensus 102 ~l~dmv~eGlI~eek~dsF~~ 122 (207)
-+..|++||+++||++.-++-
T Consensus 457 ya~~L~~eg~~tee~vkE~~~ 477 (913)
T KOG0451|consen 457 YAQQLAKEGVLTEEKVKEMRD 477 (913)
T ss_pred HHHHHHhcccccHHHHHHHHH
Confidence 367899999999999987753
No 67
>PRK10079 phosphonate metabolism transcriptional regulator PhnF; Provisional
Probab=26.99 E-value=1.1e+02 Score=25.98 Aligned_cols=51 Identities=10% Similarity=0.277 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhhcccccccCceEEEEeecCCCccccH----HHHHHHHHHHHHHcCCCchhh
Q 048802 58 DQFESDFTSFLKFWSEELKTGSRMVLNFIGNDKYHTGI----FELLGMVLNDMVSEGLIEESK 116 (207)
Q Consensus 58 ~Qf~~D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~----~~~l~~~l~dmv~eGlI~eek 116 (207)
.|.+.++..-+. + +++||.+| +.-.. .+.. =..+.+||++|+.||+|....
T Consensus 15 ~qi~~~L~~~I~--~-~~~~G~~L----PsE~e-La~~~~VSR~TVR~Al~~L~~eGli~r~~ 69 (241)
T PRK10079 15 QEIAAKLEQELR--Q-HYRCGDYL----PAEQQ-LAARYEVNRHTLRRAIDQLVEKGWVQRRQ 69 (241)
T ss_pred HHHHHHHHHHHh--c-ccCCCCcC----CCHHH-HHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 677788888774 5 89999864 11110 1112 246899999999999997643
No 68
>PF06256 Nucleo_LEF-12: Nucleopolyhedrovirus LEF-12 protein; InterPro: IPR009365 This family consists of several Nucleopolyhedrovirus late expression factor-12 (LEF-12) proteins. The function of this family is unknown [,].
Probab=26.70 E-value=65 Score=27.95 Aligned_cols=30 Identities=23% Similarity=0.431 Sum_probs=26.0
Q ss_pred ccHHHHHHHHHHHHHHcCCCchhhhhcccc
Q 048802 93 TGIFELLGMVLNDMVSEGLIEESKLESFRL 122 (207)
Q Consensus 93 ~~~~~~l~~~l~dmv~eGlI~eek~dsF~~ 122 (207)
..+.+.+..+|++|+..|.|++.+.++-.|
T Consensus 13 ~~~~~~~~~~ld~M~~~geit~~Da~sLCl 42 (185)
T PF06256_consen 13 QDFADMMKRTLDEMVEHGEITRADADSLCL 42 (185)
T ss_pred HHHHHHHHHHHHHHHHcCCcchhhhcceee
Confidence 446678899999999999999999998744
No 69
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=26.56 E-value=64 Score=20.36 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHcCCCchhhhhccccccccCCCCCccccccccCHHHHHhhhc
Q 048802 97 ELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVMG 149 (207)
Q Consensus 97 ~~l~~~l~dmv~eGlI~eek~dsF~~~~~~~~~~~~n~P~Y~~s~eEv~~~i~ 149 (207)
..+..+++.|+++|+|..+.-..- -.|..+.+.+++++.
T Consensus 25 ~~v~~~l~~L~~~g~i~~~~~~~~--------------~~~~~~~~~~~~~~~ 63 (66)
T smart00418 25 STVSHHLKKLREAGLVESRREGKR--------------VYYSLTDEKVADLLE 63 (66)
T ss_pred HHHHHHHHHHHHCCCeeeeecCCE--------------EEEEEchHHHHHHHH
Confidence 457889999999999985543222 236666666666654
No 70
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=25.38 E-value=1.1e+02 Score=27.17 Aligned_cols=45 Identities=18% Similarity=0.328 Sum_probs=39.4
Q ss_pred cccHHHHHHHHHHHHHHcCCCchhhhhccccccccCCCCCccccccccCHHHHHhhhccCCceE
Q 048802 92 HTGIFELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSEGSFN 155 (207)
Q Consensus 92 ~~~~~~~l~~~l~dmv~eGlI~eek~dsF~~~~~~~~~~~~n~P~Y~~s~eEv~~~i~~~gsF~ 155 (207)
...-|+....||+.|.++|+.+.+++.+. +.+|+.++|...|=|+
T Consensus 41 QNT~WknvekAlenLk~~~~~~l~~I~~~-------------------~~~~L~elIrpsGFYn 85 (215)
T COG2231 41 QNTSWKNVEKALENLKNEGILNLKKILKL-------------------DEEELAELIRPSGFYN 85 (215)
T ss_pred ccccHHHHHHHHHHHHHcccCCHHHHhcC-------------------CHHHHHHHHhccchHH
Confidence 45569999999999999999999999888 6788999999888765
No 71
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=24.87 E-value=91 Score=21.97 Aligned_cols=28 Identities=18% Similarity=0.457 Sum_probs=24.5
Q ss_pred ccHHHHHHHHHHHHHHcCCCchhhhhcc
Q 048802 93 TGIFELLGMVLNDMVSEGLIEESKLESF 120 (207)
Q Consensus 93 ~~~~~~l~~~l~dmv~eGlI~eek~dsF 120 (207)
..++++=...++..|..|.|++|+.|.+
T Consensus 14 ~qm~e~kK~~idk~Ve~G~iTqeqAd~i 41 (59)
T PF10925_consen 14 KQMLELKKQIIDKYVEAGVITQEQADAI 41 (59)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 4567777899999999999999999887
No 72
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=24.77 E-value=80 Score=22.24 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCCCchhhhhcc
Q 048802 98 LLGMVLNDMVSEGLIEESKLESF 120 (207)
Q Consensus 98 ~l~~~l~dmv~eGlI~eek~dsF 120 (207)
.+..++..|++.|+|++++.+..
T Consensus 17 ~~~~ild~L~~~~vlt~~e~e~I 39 (85)
T PF00619_consen 17 DLDDILDHLLSRGVLTEEEYEEI 39 (85)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCHHHHHHH
Confidence 46789999999999999999999
No 73
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=24.51 E-value=72 Score=23.55 Aligned_cols=25 Identities=16% Similarity=0.461 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHcCCCchhhhhcc
Q 048802 96 FELLGMVLNDMVSEGLIEESKLESF 120 (207)
Q Consensus 96 ~~~l~~~l~dmv~eGlI~eek~dsF 120 (207)
-+.+...|.+|...+++++++.+..
T Consensus 15 ~~~i~~llD~Ll~~~Vl~~~E~e~i 39 (83)
T cd08325 15 KGVINGLLDDLLEKNVLNEEEMEKI 39 (83)
T ss_pred HhhHHHHHHHHHHcCCCCHHHHHHH
Confidence 3567889999999999999999998
No 74
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=24.33 E-value=79 Score=30.68 Aligned_cols=60 Identities=13% Similarity=0.169 Sum_probs=50.1
Q ss_pred ccccCceEEEEeecCCCccccHHHHHHHHHHHHHHcCCCchhhhhccccccccCCCCCccccccccCHHHHHhhhccC
Q 048802 74 ELKTGSRMVLNFIGNDKYHTGIFELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSE 151 (207)
Q Consensus 74 EL~~GG~mvl~~~g~~~~~~~~~~~l~~~l~dmv~eGlI~eek~dsF~~~~~~~~~~~~n~P~Y~~s~eEv~~~i~~~ 151 (207)
=+.|||.+|++=.|.+ .-|+.+..|=.-+...|-.+.|+ +| +.-+.+||+-+.+.++.-.
T Consensus 214 l~~~gg~lVivErGtp----~Gf~~I~rAR~~ll~~~~~~~e~--~~------------~ahiiAPCPH~~~CPl~v~ 273 (484)
T COG5459 214 LLAPGGHLVIVERGTP----AGFERILRARQILLAPGNFPDEF--NY------------FAHIIAPCPHQRKCPLQVP 273 (484)
T ss_pred hccCCCeEEEEeCCCc----hhHHHHHHHHHHHhcCCCCcccc--cc------------ceeeeccCCCCCCCCccCC
Confidence 3678999999887763 45889999999999999888766 77 8899999999999999864
No 75
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=24.21 E-value=1.1e+02 Score=27.85 Aligned_cols=53 Identities=30% Similarity=0.437 Sum_probs=36.1
Q ss_pred cCCCccceeecccccccccCCCccccchhcccccccccEEEeccCCCccHHHHHHHHHHHHHHHHHhhcccccccCceEE
Q 048802 3 FLPCFLNLVYSSFCHHWLSRVPTELVSERRIHLLNKRDVCLAKIYNPPSVPKVYFDQFESDFTSFLKFWSEELKTGSRMV 82 (207)
Q Consensus 3 fP~~Slh~~~Ss~alHWLS~vP~~l~~~~~s~~~Nkg~i~~~~~~s~~~v~~ay~~Qf~~D~~~FL~~Ra~EL~~GG~mv 82 (207)
|++++.|=++|-.|++||=..-+... .| ++.+..|...=-.=|+.|++-|
T Consensus 108 frpGtFDg~ISISAvQWLcnA~~s~~-------------------~P-----------~~Rl~~FF~tLy~~l~rg~raV 157 (270)
T KOG1541|consen 108 FRPGTFDGVISISAVQWLCNADKSLH-------------------VP-----------KKRLLRFFGTLYSCLKRGARAV 157 (270)
T ss_pred CCCCccceEEEeeeeeeecccCcccc-------------------Ch-----------HHHHHHHhhhhhhhhccCceeE
Confidence 89999999999999999644322211 12 1334455554445688999999
Q ss_pred EEe
Q 048802 83 LNF 85 (207)
Q Consensus 83 l~~ 85 (207)
+.|
T Consensus 158 ~Qf 160 (270)
T KOG1541|consen 158 LQF 160 (270)
T ss_pred EEe
Confidence 988
No 76
>KOG2837 consensus Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing [RNA processing and modification]
Probab=23.18 E-value=76 Score=29.38 Aligned_cols=70 Identities=20% Similarity=0.321 Sum_probs=44.3
Q ss_pred CCccHHHHHHHHHHHHHHHHHhhcccccccCceEEEE-eec-CCCc--cccHHHHHHHHHHHHHHcCCCchhhh
Q 048802 48 NPPSVPKVYFDQFESDFTSFLKFWSEELKTGSRMVLN-FIG-NDKY--HTGIFELLGMVLNDMVSEGLIEESKL 117 (207)
Q Consensus 48 s~~~v~~ay~~Qf~~D~~~FL~~Ra~EL~~GG~mvl~-~~g-~~~~--~~~~~~~l~~~l~dmv~eGlI~eek~ 117 (207)
+|....+.|..||.+||.+.|+-|+.+=.-|---|-+ ++. |... ....|..|.....-|=..|.+.-++-
T Consensus 60 Np~~~~~~fs~eF~~dFl~LLr~~~g~KrI~aN~VYnEYI~dR~HvHMNaT~w~SLtefvk~LGR~Gkc~vdet 133 (309)
T KOG2837|consen 60 NPGRSLERFSNEFEKDFLSLLRQRHGTKRIGANKVYNEYIADRNHVHMNATRWRSLTEFVKYLGRTGKCKVDET 133 (309)
T ss_pred CcchhHHHhHHHHHHHHHHHHHHHhccceechhHHHHHHHccccceeecchhhhhHHHHHHHhccCceeeeecC
Confidence 5666788999999999999999998776544311111 001 1111 34456666666666666776665553
No 77
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=22.91 E-value=58 Score=28.46 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHHHHHcCCCchhhhhccccccccCCCCCccccccccC
Q 048802 94 GIFELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLC 140 (207)
Q Consensus 94 ~~~~~l~~~l~dmv~eGlI~eek~dsF~~~~~~~~~~~~n~P~Y~~s 140 (207)
-+...+.++|+.||.+|+|+-||.-+- |+=.-++|
T Consensus 40 IVl~tVKd~lQqlVDDgvV~~EK~Gts------------N~YWsF~s 74 (209)
T COG5124 40 IVLMTVKDLLQQLVDDGVVSVEKCGTS------------NIYWSFKS 74 (209)
T ss_pred cHHHHHHHHHHHHhhcCceeeeeeccc------------eeEEecch
Confidence 345678999999999999999999998 87776664
No 78
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=22.83 E-value=44 Score=26.67 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=18.9
Q ss_pred cCCCccceee-------cc-cccccccCCCccc
Q 048802 3 FLPCFLNLVY-------SS-FCHHWLSRVPTEL 27 (207)
Q Consensus 3 fP~~Slh~~~-------Ss-~alHWLS~vP~~l 27 (207)
+|.++|.|.+ |+ |.++|+.|.|..+
T Consensus 11 ~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~l 43 (115)
T cd05721 11 SSNGAASLVCEYTYNGFSKEFRASLLKGADSAV 43 (115)
T ss_pred cCCCCEEEEEEecCCccccEEEEEEEEeCCCCc
Confidence 5667766655 44 8999999999954
No 79
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=22.07 E-value=85 Score=23.10 Aligned_cols=23 Identities=9% Similarity=0.251 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCCchhhhhcc
Q 048802 98 LLGMVLNDMVSEGLIEESKLESF 120 (207)
Q Consensus 98 ~l~~~l~dmv~eGlI~eek~dsF 120 (207)
.+..+|..|.++|+|++++.+..
T Consensus 16 ~v~~ilD~L~~~~Vit~e~~~~I 38 (82)
T cd08330 16 NVDPILDKLHGKKVITQEQYSEV 38 (82)
T ss_pred hHHHHHHHHHHCCCCCHHHHHHH
Confidence 35678999999999999999999
No 80
>PF08714 Fae: Formaldehyde-activating enzyme (Fae); InterPro: IPR014826 This family consists of formaldehyde-activating enzyme, or the corresponding domain of longer, bifunctional proteins. It links formaldehyde to the C1 carrier tetrahydromethanopterin (H4MPT), an analog of tetrahydrofolate, and is common among species with H4MPT []. The ribulose monophosphate (RuMP) pathway, which removes the toxic metabolite formaldehyde by assimilation, runs in the opposite direction in some species to produce ribulose 5-phosphate for nucleotide biosynthesis, leaving formaldehyde as an additional metabolite. In these species, formaldehyde activating enzyme may occur as a fusion protein with D-arabino 3-hexulose 6-phosphate formaldehyde lyase from the RuMP pathway.; GO: 0016840 carbon-nitrogen lyase activity, 0016051 carbohydrate biosynthetic process; PDB: 1Y60_A 1Y5Y_D.
Probab=21.67 E-value=83 Score=26.68 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCCCchhhhhcc
Q 048802 97 ELLGMVLNDMVSEGLIEESKLESF 120 (207)
Q Consensus 97 ~~l~~~l~dmv~eGlI~eek~dsF 120 (207)
-.++++..|.|.||+|.+++.|..
T Consensus 81 aavA~AVaD~V~eG~iP~~~a~dl 104 (159)
T PF08714_consen 81 AAVAKAVADAVEEGIIPKDEADDL 104 (159)
T ss_dssp HHHHHHHHHHHHTTSS-TTTGGGE
T ss_pred HHHHHHHHHHHHcCCCChhhcCcE
Confidence 467899999999999999999998
No 81
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=21.58 E-value=4.2e+02 Score=22.49 Aligned_cols=70 Identities=16% Similarity=0.155 Sum_probs=44.0
Q ss_pred ccccccCceEEEEeecCCC--ccccHHHHHHHHHHHHHHcCCCchhhhhccccccccCCCCCccccccccCHHHHHhhhc
Q 048802 72 SEELKTGSRMVLNFIGNDK--YHTGIFELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVMG 149 (207)
Q Consensus 72 a~EL~~GG~mvl~~~g~~~--~~~~~~~~l~~~l~dmv~eGlI~eek~dsF~~~~~~~~~~~~n~P~Y~~s~eEv~~~i~ 149 (207)
|++| |...|++..|... .....|+.+.+.|++++.+ -...++++||-... -..+..+++++.++++
T Consensus 93 A~~l--Ga~~vv~h~g~~~~~~~e~~~~~~~~~l~~l~~~-------~~gv~l~lEn~~~~---~~~~~~~~~~~~~ll~ 160 (273)
T smart00518 93 CEEL--GIKALVFHPGSYLKQSKEEALNRIIESLNEVIDE-------TKGVVILLETTAGK---GSQIGSTFEDLKEIID 160 (273)
T ss_pred HHHc--CCCEEEEccccccCCCHHHHHHHHHHHHHHHHhc-------cCCcEEEEeccCCC---CCccCCCHHHHHHHHH
Confidence 5566 5556666676542 2345688888999999874 12356778864211 1133458899999888
Q ss_pred cCCc
Q 048802 150 SEGS 153 (207)
Q Consensus 150 ~~gs 153 (207)
.-++
T Consensus 161 ~v~~ 164 (273)
T smart00518 161 LIKE 164 (273)
T ss_pred hcCC
Confidence 6543
No 82
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=21.28 E-value=1.1e+02 Score=22.99 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=18.9
Q ss_pred cHHHHHHHHHHHHHHcCCCchhhhhc
Q 048802 94 GIFELLGMVLNDMVSEGLIEESKLES 119 (207)
Q Consensus 94 ~~~~~l~~~l~dmv~eGlI~eek~ds 119 (207)
.+.+.+...++.|...| |++++++.
T Consensus 155 ~~~~~~~~~l~~l~~~~-~s~~el~~ 179 (184)
T PF05193_consen 155 EAIEAILQELKRLREGG-ISEEELER 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHC-S-HHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-CCHHHHHH
Confidence 36678888899999998 77777764
No 83
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=21.19 E-value=63 Score=23.50 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.8
Q ss_pred HHHHHHHhhcccccccCceEEEEee
Q 048802 62 SDFTSFLKFWSEELKTGSRMVLNFI 86 (207)
Q Consensus 62 ~D~~~FL~~Ra~EL~~GG~mvl~~~ 86 (207)
++...|++.=.+=|+|||++++.+.
T Consensus 92 ~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 92 RLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp CHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 4778899999999999999999874
No 84
>TIGR03126 one_C_fae formaldehyde-activating enzyme. This family consists of formaldehyde-activating enzyme, or the corresponding domain of longer, bifunctional proteins. It links formaldehyde to the C1 carrier tetrahydromethanopterin (H4MPT), an analog of tetrahydrofolate, and is common among species with H4MPT. The ribulose monophosphate (RuMP) pathway, which removes the toxic metabolite formaldehyde by assimilation, runs in the opposite direction in some species to produce ribulose 5-phosphate for nucleotide biosynthesis, leaving formaldehyde as an additional metabolite. In these species, formaldehyde activating enzyme may occur as a fusion protein with D-arabino 3-hexulose 6-phosphate formaldehyde lyase from the RuMP pathway.
Probab=20.69 E-value=78 Score=26.88 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCCCchhhhhcc
Q 048802 97 ELLGMVLNDMVSEGLIEESKLESF 120 (207)
Q Consensus 97 ~~l~~~l~dmv~eGlI~eek~dsF 120 (207)
..++++..|.|.||+|++++.|..
T Consensus 83 ~avA~AVaD~V~eG~iP~~~addl 106 (160)
T TIGR03126 83 AAVAKAVADSVEEGIIPKDEADDL 106 (160)
T ss_pred HHHHHHHHHHHHcCCCChhhhCcE
Confidence 467899999999999999999998
No 85
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=20.58 E-value=50 Score=27.06 Aligned_cols=26 Identities=8% Similarity=0.100 Sum_probs=20.5
Q ss_pred ccccCHHHHHhhhccCCceEEeEEeee
Q 048802 136 VYTLCVEEGRQVMGSEGSFNIHQHETS 162 (207)
Q Consensus 136 ~Y~~s~eEv~~~i~~~gsF~I~~~E~~ 162 (207)
..+.+.+|+.+.+++.| |+|.....+
T Consensus 143 ~~~~s~~~~~~ll~~~G-f~v~~~~~~ 168 (194)
T TIGR02081 143 IHFCTIADFEDLCGELN-LRILDRAAF 168 (194)
T ss_pred cccCcHHHHHHHHHHCC-CEEEEEEEe
Confidence 45779999999999765 777776665
No 86
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.47 E-value=1.3e+02 Score=20.94 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHcCCCchhhhhcc
Q 048802 98 LLGMVLNDMVSEGLIEESKLESF 120 (207)
Q Consensus 98 ~l~~~l~dmv~eGlI~eek~dsF 120 (207)
.+...+.+|.++|+|+.++.+..
T Consensus 14 ~~~~il~~L~~~~vlt~~e~~~i 36 (80)
T cd01671 14 DVEDVLDHLLSDGVLTEEEYEKI 36 (80)
T ss_pred cHHHHHHHHHHcCCCCHHHHHHH
Confidence 46778999999999999999998
No 87
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=20.42 E-value=1.4e+02 Score=24.72 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=29.6
Q ss_pred HHHHHHhhcccccccCceEEEEeecCCCccccHHHHHHHHHHHHHHcCCCchhhhhcc
Q 048802 63 DFTSFLKFWSEELKTGSRMVLNFIGNDKYHTGIFELLGMVLNDMVSEGLIEESKLESF 120 (207)
Q Consensus 63 D~~~FL~~Ra~EL~~GG~mvl~~~g~~~~~~~~~~~l~~~l~dmv~eGlI~eek~dsF 120 (207)
++..+++.=.+=|+|||++++.. |.. ...-+......|..+|+ +..+.+++
T Consensus 120 ~~~~~~~~~~~~LkpgG~lvi~~-~~~-----~~~~~~~~~e~~~~~~~-~~~~~~~~ 170 (181)
T TIGR00138 120 SLNVLLELTLNLLKVGGYFLAYK-GKK-----YLDEIEEAKRKCQVLGV-EPLEVPPL 170 (181)
T ss_pred CHHHHHHHHHHhcCCCCEEEEEc-CCC-----cHHHHHHHHHhhhhcCc-eEeecccc
Confidence 34445554455599999998764 221 12233444466777775 45566777
Done!