BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048803
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 9/162 (5%)
Query: 90 SGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRG 149
S EW LPP+P LF L V ++ V+ G DL T + SV ++ ++A W
Sbjct: 87 SSEWVGLPPLPS---ARCLF-GLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV 142
Query: 150 ADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDEC 209
++P ++ + +Y GG +DK Y+ + +W L M R
Sbjct: 143 KNLP--IKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMF 200
Query: 210 KAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEE 251
H GK+++ GG + + EAFD +W + E
Sbjct: 201 GVAIHKGKIVIAGGVTEDG---LSASVEAFDLKTNKWEVMTE 239
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 21/128 (16%)
Query: 123 GGLDLTT-WEASSSVFVFNIISATWRRGADMPGGRRMLF--GCASDGDRTVYVAGGHDED 179
GG+ LT+ W+ S+ + ++ T + +F G + DG+ + V GG+D
Sbjct: 199 GGITLTSSWDPSTGIVSDRTVTVT----------KHDMFCPGISMDGNGQIVVTGGNDAK 248
Query: 180 KNALKSAMAYDVARDEWASLPDMSRERD-ECKAVFHCGKLLVIGGYSTNAQGRFERHAEA 238
K +L YD + D W PDM R + A G++ IGG +++ G FE++ E
Sbjct: 249 KTSL-----YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG--SHSGGVFEKNGEV 301
Query: 239 FDAAAQQW 246
+ +++ W
Sbjct: 302 YSPSSKTW 309
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 21/128 (16%)
Query: 123 GGLDLTT-WEASSSVFVFNIISATWRRGADMPGGRRMLF--GCASDGDRTVYVAGGHDED 179
GG+ LT+ W+ S+ + ++ T + +F G + DG+ + V GG+D
Sbjct: 199 GGITLTSSWDPSTGIVSDRTVTVT----------KHDMFCPGISMDGNGQIVVTGGNDAK 248
Query: 180 KNALKSAMAYDVARDEWASLPDMSRERD-ECKAVFHCGKLLVIGGYSTNAQGRFERHAEA 238
K +L YD + D W PDM R + A G++ IGG + + G FE++ E
Sbjct: 249 KTSL-----YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG--SGSGGVFEKNGEV 301
Query: 239 FDAAAQQW 246
+ +++ W
Sbjct: 302 YSPSSKTW 309
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Query: 139 FNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWAS 198
+N++ +W P R L CA++G +Y +GG + +AL YD + W +
Sbjct: 75 YNVVKDSWYSKLGPPTPRDSLAACAAEGK--IYTSGGSEVGNSALYLFECYDTRTESWHT 132
Query: 199 LPDMSRERDECKAVFHCGKLLVIGG-YSTNAQGRFERHAEAFDAAAQQW 246
P M +R V G + V GG N GR E +D A + W
Sbjct: 133 KPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW 181
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 170 VYVAGG---HDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYST 226
+YV GG ++ L S YD A + W L M R VF K+ +GG
Sbjct: 152 IYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGG--Q 209
Query: 227 NAQGRFERHAEAFDAAAQQWGPV 249
N G + + E +D +W V
Sbjct: 210 NGLGGLD-NVEYYDIKLNEWKMV 231
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 9/109 (8%)
Query: 167 DRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYST 226
D VY+ GG +K Y+V +D W S RD A GK+ GG
Sbjct: 55 DNVVYILGG--SQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEV 112
Query: 227 NAQGRFERHAEAFDAAAQQWGPVEEDFMETATCPRSCAGVDSNDL-YMC 274
+ E +D + W + M T C S V++N L Y+C
Sbjct: 113 GNSALY--LFECYDTRTESWH--TKPSMLTQRC--SHGMVEANGLIYVC 155
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 21/128 (16%)
Query: 123 GGLDLTT-WEASSSVFVFNIISATWRRGADMPGGRRMLF--GCASDGDRTVYVAGGHDED 179
GG+ LT+ W+ S+ + ++ T + +F G + DG+ + V GG+D
Sbjct: 199 GGITLTSSWDPSTGIVSDRTVTVT----------KHDMFCPGISMDGNGQIVVTGGNDAK 248
Query: 180 KNALKSAMAYDVARDEWASLPDMSRERD-ECKAVFHCGKLLVIGGYSTNAQGRFERHAEA 238
K +L YD + D W PDM R + A G++ IGG + + G FE++ E
Sbjct: 249 KTSL-----YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG--SFSGGVFEKNGEV 301
Query: 239 FDAAAQQW 246
+ +++ W
Sbjct: 302 YSPSSKTW 309
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 21/128 (16%)
Query: 123 GGLDLTT-WEASSSVFVFNIISATWRRGADMPGGRRMLF--GCASDGDRTVYVAGGHDED 179
GG+ LT+ W+ S+ + ++ T + +F G + DG+ + V GG+D
Sbjct: 221 GGITLTSSWDPSTGIVSDRTVTVT----------KHDMFCPGISMDGNGQIVVTGGNDAK 270
Query: 180 KNALKSAMAYDVARDEWASLPDMSRERD-ECKAVFHCGKLLVIGGYSTNAQGRFERHAEA 238
K +L YD + D W PDM R + A G++ IGG + + G FE++ E
Sbjct: 271 KTSL-----YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG--SFSGGVFEKNGEV 323
Query: 239 FDAAAQQW 246
+ +++ W
Sbjct: 324 YSPSSKTW 331
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 21/128 (16%)
Query: 123 GGLDLTT-WEASSSVFVFNIISATWRRGADMPGGRRMLF--GCASDGDRTVYVAGGHDED 179
GG+ LT+ W+ S+ + ++ T + +F G + DG+ + V GG+D
Sbjct: 199 GGITLTSSWDPSTGIVSDRTVTVT----------KHDMFCPGISMDGNGQIVVTGGNDAK 248
Query: 180 KNALKSAMAYDVARDEWASLPDMSRERD-ECKAVFHCGKLLVIGGYSTNAQGRFERHAEA 238
K +L YD + D W PDM R + A G++ IGG + + G FE++ E
Sbjct: 249 KTSL-----YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG--SWSGGVFEKNGEV 301
Query: 239 FDAAAQQW 246
+ +++ W
Sbjct: 302 YSPSSKTW 309
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 21/128 (16%)
Query: 123 GGLDLTT-WEASSSVFVFNIISATWRRGADMPGGRRMLF--GCASDGDRTVYVAGGHDED 179
GG+ LT+ W+ S+ + ++ T + +F G + DG+ + V GG+D
Sbjct: 199 GGITLTSSWDPSTGIVSDRTVTVT----------KHDMFCPGISMDGNGQIVVTGGNDAK 248
Query: 180 KNALKSAMAYDVARDEWASLPDMSRERD-ECKAVFHCGKLLVIGGYSTNAQGRFERHAEA 238
K +L YD + D W PDM R + A G++ IGG + + G FE++ E
Sbjct: 249 KTSL-----YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG--SWSGGVFEKNGEV 301
Query: 239 FDAAAQQW 246
+ +++ W
Sbjct: 302 YSPSSKTW 309
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 21/128 (16%)
Query: 123 GGLDLTT-WEASSSVFVFNIISATWRRGADMPGGRRMLF--GCASDGDRTVYVAGGHDED 179
GG+ LT+ W+ S+ + ++ T + +F G + DG+ + V GG+D
Sbjct: 216 GGITLTSSWDPSTGIVSDRTVTVT----------KHDMFXPGISMDGNGQIVVTGGNDAK 265
Query: 180 KNALKSAMAYDVARDEWASLPDMSRERD-ECKAVFHCGKLLVIGGYSTNAQGRFERHAEA 238
K +L YD + D W PDM R + A G++ IGG + + G FE++ E
Sbjct: 266 KTSL-----YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG--SWSGGVFEKNGEV 318
Query: 239 FDAAAQQW 246
+ +++ W
Sbjct: 319 YSPSSKTW 326
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 65/162 (40%), Gaps = 14/162 (8%)
Query: 92 EWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWE-ASSSVFVFNIISATWRRGA 150
EW +PP+P P L L + V+GG ++ E SV ++ +S W
Sbjct: 78 EWLGMPPLPS-PRCL---FGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD 133
Query: 151 DMPGGRRMLFG--CASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDE 208
+P +++G S D VYV GG D+ L YD + EW L M R
Sbjct: 134 PLP---YVVYGHTVLSHMD-LVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSL 189
Query: 209 CKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVE 250
A H G+++V G + AE + +W P E
Sbjct: 190 FGATVHDGRIIVAAGVTDTG---LTSSAEVYSITDNKWAPFE 228
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 8/137 (5%)
Query: 90 SGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRG 149
S +W E P+P G + + V VIGG + + + + V++ W+
Sbjct: 126 SFKWGESDPLPYVVYGHTVLSHMDLV----YVIGGKG-SDRKCLNKMCVYDPKKFEWKEL 180
Query: 150 ADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDEC 209
A M R LFG R + AG D SA Y + ++WA +ER
Sbjct: 181 APMQTARS-LFGATVHDGRIIVAAGV--TDTGLTSSAEVYSITDNKWAPFEAFPQERSSL 237
Query: 210 KAVFHCGKLLVIGGYST 226
V G L IGG++T
Sbjct: 238 SLVSLVGTLYAIGGFAT 254
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 170 VYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQ 229
+Y AGG+D ++ L S YDV + W + M R H GK+ V+GGY +
Sbjct: 212 IYAAGGYD-GQDQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHT- 269
Query: 230 GRFERHAEAFDAAAQQWGPV 249
F E +D + W V
Sbjct: 270 --FLDSVECYDPDSDTWSEV 287
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 8/117 (6%)
Query: 110 CQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRT 169
C+ VG + GG ++ S + +N + +W R AD+ R L GC G
Sbjct: 12 CRAPKVGRLIYTAGGY---FRQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGG--L 66
Query: 170 VYVAGGHDE--DKNALKSAM-AYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGG 223
+Y GG + D N SA+ Y+ ++W+ MS R+ G + +GG
Sbjct: 67 LYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGG 123
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 8/107 (7%)
Query: 168 RTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTN 227
R +Y AGG+ + +L AY+ + W L D+ R G L +GG + +
Sbjct: 19 RLIYTAGGYF--RQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNS 76
Query: 228 AQGRFERHA-EAFDAAAQQWGPVEEDFMETATCPRSCAGVDSNDLYM 273
G + A + ++ QW P + + PR+ GV D ++
Sbjct: 77 PDGNTDSSALDCYNPMTNQWSPC-----ASMSVPRNRIGVGVIDGHI 118
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 156 RRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHC 215
RR+ G A +R +Y GG D N L SA Y R+EW + M+ R
Sbjct: 152 RRIGVGVAVL-NRLLYAVGGFD-GTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLH 209
Query: 216 GKLLVIGGYSTNAQGRFERHAEAFDAAAQQW 246
+ GGY Q E +D + W
Sbjct: 210 NCIYAAGGYDGQDQ---LNSVERYDVETETW 237
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 170 VYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQ 229
+Y AGG+D ++ L S YDV + W + M R H GK+ V+GGY +
Sbjct: 211 IYAAGGYD-GQDQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHT- 268
Query: 230 GRFERHAEAFDAAAQQWGPV 249
F E +D + W V
Sbjct: 269 --FLDSVECYDPDSDTWSEV 286
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 8/117 (6%)
Query: 110 CQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRT 169
C+ VG + GG ++ S + +N + +W R AD+ R L GC G
Sbjct: 11 CRAPKVGRLIYTAGGY---FRQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGG--L 65
Query: 170 VYVAGGHDE--DKNALKSAM-AYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGG 223
+Y GG + D N SA+ Y+ ++W+ MS R+ G + +GG
Sbjct: 66 LYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGG 122
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 8/107 (7%)
Query: 168 RTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTN 227
R +Y AGG+ + +L AY+ + W L D+ R G L +GG + +
Sbjct: 18 RLIYTAGGYF--RQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNS 75
Query: 228 AQGRFERHA-EAFDAAAQQWGPVEEDFMETATCPRSCAGVDSNDLYM 273
G + A + ++ QW P + + PR+ GV D ++
Sbjct: 76 PDGNTDSSALDCYNPMTNQWSPC-----ASMSVPRNRIGVGVIDGHI 117
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 156 RRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHC 215
RR+ G A +R +Y GG D N L SA Y R+EW + M+ R
Sbjct: 151 RRIGVGVAVL-NRLLYAVGGFD-GTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLH 208
Query: 216 GKLLVIGGYSTNAQGRFERHAEAFDAAAQQW 246
+ GGY Q E +D + W
Sbjct: 209 NCIYAAGGYDGQDQ---LNSVERYDVETETW 236
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 62/155 (40%), Gaps = 27/155 (17%)
Query: 119 LVVIGGLDLTTWEASSSVFV-----FNIISA--TWRRGADMPGGRRMLFGCASDGDRTVY 171
L +GG D T S+ + + +I+A T R GA G +L C +Y
Sbjct: 172 LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGA----GVCVLHNC-------IY 220
Query: 172 VAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGR 231
AGG+D ++ L S YDV + W + M R H G++ V+GGY +
Sbjct: 221 AAGGYD-GQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHT--- 276
Query: 232 FERHAEAFDAAAQQWGPVEEDFMETATCPRSCAGV 266
F E +D W V T RS GV
Sbjct: 277 FLDSVECYDPDTDTWSEVTR-----MTSGRSGVGV 306
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 131 EASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDE--DKNALKSAM- 187
++ S + +N TW R AD+ R L GC G +Y GG + D N SA+
Sbjct: 37 QSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGG--LLYAVGGRNNSPDGNTDSSALD 94
Query: 188 AYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGG 223
Y+ ++W+ MS R+ G + +GG
Sbjct: 95 CYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGG 130
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 168 RTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTN 227
R +Y AGG+ + +L AY+ + W L D+ R G L +GG + +
Sbjct: 26 RLIYTAGGYF--RQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNS 83
Query: 228 AQGRFERHA-EAFDAAAQQWGP 248
G + A + ++ QW P
Sbjct: 84 PDGNTDSSALDCYNPMTNQWSP 105
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 62/155 (40%), Gaps = 27/155 (17%)
Query: 119 LVVIGGLDLTTWEASSSVFV-----FNIISA--TWRRGADMPGGRRMLFGCASDGDRTVY 171
L +GG D T S+ + + +I+A T R GA G +L C +Y
Sbjct: 171 LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGA----GVCVLHNC-------IY 219
Query: 172 VAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGR 231
AGG+D ++ L S YDV + W + M R H G++ V+GGY +
Sbjct: 220 AAGGYD-GQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHT--- 275
Query: 232 FERHAEAFDAAAQQWGPVEEDFMETATCPRSCAGV 266
F E +D W V T RS GV
Sbjct: 276 FLDSVECYDPDTDTWSEVTR-----MTSGRSGVGV 305
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 131 EASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDE--DKNALKSAM- 187
++ S + +N TW R AD+ R L GC G +Y GG + D N SA+
Sbjct: 36 QSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGG--LLYAVGGRNNSPDGNTDSSALD 93
Query: 188 AYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGG 223
Y+ ++W+ MS R+ G + +GG
Sbjct: 94 CYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGG 129
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 168 RTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTN 227
R +Y AGG+ + +L AY+ + W L D+ R G L +GG + +
Sbjct: 25 RLIYTAGGYF--RQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNS 82
Query: 228 AQGRFERHA-EAFDAAAQQWGP 248
G + A + ++ QW P
Sbjct: 83 PDGNTDSSALDCYNPMTNQWSP 104
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 9/97 (9%)
Query: 170 VYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQ 229
+Y AGG+D ++ L S YDV + W + R H G++ V+GGY +
Sbjct: 218 IYAAGGYD-GQDQLNSVERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYDGHT- 275
Query: 230 GRFERHAEAFDAAAQQWGPVEEDFMETATCPRSCAGV 266
F E +D W V T RS GV
Sbjct: 276 --FLDSVECYDPDTDTWSEVTR-----XTSGRSGVGV 305
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 8/107 (7%)
Query: 168 RTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTN 227
R +Y AGG+ + +L AY+ + W L D+ R G L +GG + +
Sbjct: 25 RLIYTAGGYF--RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNS 82
Query: 228 AQGRFERHA-EAFDAAAQQWGPVEEDFMETATCPRSCAGVDSNDLYM 273
G + A + ++ QW P + PR+ GV D ++
Sbjct: 83 PDGNTDSSALDCYNPXTNQWSPCAP-----XSVPRNRIGVGVIDGHI 124
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 131 EASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDE--DKNALKSAM- 187
++ S + +N + TW R AD+ R L GC G +Y GG + D N SA+
Sbjct: 36 QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGG--LLYAVGGRNNSPDGNTDSSALD 93
Query: 188 AYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGG 223
Y+ ++W+ S R+ G + +GG
Sbjct: 94 CYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGG 129
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 68/176 (38%), Gaps = 16/176 (9%)
Query: 92 EWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIIS-ATWRRGA 150
EWS LP I + ++ + VIGG D + +S + W A
Sbjct: 42 EWSFLPSITRKRR----YVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVA 97
Query: 151 DMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECK 210
M RR L G + GD +YV+GG D + S YD D+W+ L DM R+
Sbjct: 98 PM-NVRRGLAGATTLGD-MIYVSGGFDGSRRH-TSMERYDPNIDQWSMLGDMQTAREGAG 154
Query: 211 AVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEEDFMETATCPRSCAGV 266
V G + +GGY E +D W V M T RS AGV
Sbjct: 155 LVVASGVIYCLGGYDGL---NILNSVEKYDPHTGHWTNVTP--MAT---KRSGAGV 202
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 170 VYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQ 229
+YV GG D + L S AY++ D W ++ M+ R A G+L I GY N+
Sbjct: 209 IYVVGGFDGTAH-LSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNS- 266
Query: 230 GRFERHAEAFDAAAQQWGPVEEDFMETATC 259
E +D W V M T C
Sbjct: 267 --LLSSIECYDPIIDSWEVVTS--MGTQRC 292
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 55/153 (35%), Gaps = 13/153 (8%)
Query: 113 SAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYV 172
+ +G + V GG D + S + NI W DM R + G +Y
Sbjct: 109 TTLGDMIYVSGGFDGSRRHTSMERYDPNI--DQWSMLGDMQTAREGAGLVVASG--VIYC 164
Query: 173 AGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRF 232
GG+D N L S YD W ++ M+ +R + V+GG+ A
Sbjct: 165 LGGYD-GLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAH--- 220
Query: 233 ERHAEAFDAAAQQWGPVEEDFMETATCPRSCAG 265
EA++ W V + T PR G
Sbjct: 221 LSSVEAYNIRTDSWTTV-----TSMTTPRCYVG 248
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 167 DRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGY 224
+ + V GG ++ + YD EW+ LP ++R+R +V ++ VIGGY
Sbjct: 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGY 71
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 119 LVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDE 178
L +GG D+ + + S+V +N + W A+M RR G + +Y GGHD
Sbjct: 158 LYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMS-TRRSGAGVGVL-NNLLYAVGGHDG 215
Query: 179 DKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGG 223
KS YD + W + DM+ R G L V+GG
Sbjct: 216 PL-VRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGG 259
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 56/136 (41%), Gaps = 11/136 (8%)
Query: 139 FNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWAS 198
++ + W A+M R L +G +Y GG D L S AY++ +EW
Sbjct: 82 YDPVKDQWTSVANMRDRRSTLGAAVLNG--LLYAVGGFD-GSTGLSSVEAYNIKSNEWFH 138
Query: 199 LPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEEDFMETAT 258
+ M+ R G L +GGY A + E ++A +W + E M T
Sbjct: 139 VAPMNTRRSSVGVGVVGGLLYAVGGYDV-ASRQCLSTVECYNATTNEWTYIAE--MST-- 193
Query: 259 CPRSCAGVD--SNDLY 272
RS AGV +N LY
Sbjct: 194 -RRSGAGVGVLNNLLY 208
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 9/128 (7%)
Query: 119 LVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDE 178
+VV+GG +A SV ++ W + A++P RR G V+ GG +
Sbjct: 18 MVVVGG---QAPKAIRSVECYDFKEERWHQVAELPS-RRCRAGMVYMAG-LVFAVGGFNG 72
Query: 179 DKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEA 238
+++ +YD +D+W S+ +M R A G L +GG+ + EA
Sbjct: 73 SLR-VRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTG---LSSVEA 128
Query: 239 FDAAAQQW 246
++ + +W
Sbjct: 129 YNIKSNEW 136
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 54 EQLLFMTQARVDQSRKSGVPKRFATPVYRITVLELGSGEWSELP 97
+QL+ + + R+D+++ +P R + ++T L LG E LP
Sbjct: 106 DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149
>pdb|1KE2|A Chain A, Pseudomonas Serine-carboxyl Proteinase Complexed With The
Inhibitor Chymostatin (this Enzyme Renamed "sedolisin"
In 2003)
pdb|1KE1|A Chain A, Pseudomonas Serine-Carboxyl Proteinase Complexed With The
Inhibitor Pseudotyrostatin (This Enzyme Renamed
"sedolisin" In 2003)
pdb|1KDZ|A Chain A, Pseudomonas Serine-Carboxyl Proteinase Complexed With The
Inhibitor Tyrostatin (This Enzyme Renamed "sedolisin" In
2003)
pdb|1KDY|A Chain A, Pseudomonas Serine-carboxyl Proteinase Complexed With The
Inhibitor Aipf (this Enzyme Renamed "sedolisin" In 2003)
pdb|1KDV|A Chain A, Pseudomonas Serine-Carboxyl Proteinase Complexed With The
Inhibitor Aiaf (This Enzyme Renamed "sedolisin" In 2003)
pdb|1NLU|A Chain A, Pseudomonas Sedolisin (Serine-Carboxyl Proteinase)
Complexed With Two Molecules Of Pseudo-Iodotyrostatin
Length = 370
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 21/127 (16%)
Query: 101 GFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLF 160
G+PDG A P ++ +GG L T S+ + + W G D G
Sbjct: 180 GYPDGSTYSVSWPASSPNVIAVGGTTLYT--TSAGAYSNETV---WNEGLDSNGKL---- 230
Query: 161 GCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKA--VFHCGKL 218
A+ G +VY E K + +S ++ R LPD+S + + +++ G+L
Sbjct: 231 -WATGGGYSVY------ESKPSWQSVVSGTPGRRL---LPDISFDAAQGTGALIYNYGQL 280
Query: 219 LVIGGYS 225
IGG S
Sbjct: 281 QQIGGTS 287
>pdb|1GA1|A Chain A, Crystal Structure Analysis Of Pscp (Pseudomonas
Serine-Carboxyl Proteinase) Complexed With A Fragment Of
Iodotyrostatin (This Enzyme Renamed "sedolisin" In 2003)
pdb|1GA4|A Chain A, Crystal Structure Analysis Of Pscp (Pseudomonas
Serine-Carboxyl Proteinase) Complexed With Inhibitor
Pseudoiodotyrostatin (This Enzyme Renamed "sedolisin" In
2003)
pdb|1GA6|A Chain A, Crystal Structure Analysis Of Pscp (Pseudomonas
Serine-Carboxyl Proteinase) Complexed With A Fragment Of
Tyrostatin (This Enzyme Renamed "sedolisin" In 2003)
Length = 372
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 21/127 (16%)
Query: 101 GFPDGLPLFCQLSAVGPELVVIGGLDLTTWEASSSVFVFNIISATWRRGADMPGGRRMLF 160
G+PDG A P ++ +GG L T S+ + + W G D G
Sbjct: 180 GYPDGSTYSVSWPASSPNVIAVGGTTLYT--TSAGAYSNETV---WNEGLDSNGKL---- 230
Query: 161 GCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKA--VFHCGKL 218
A+ G +VY E K + +S ++ R LPD+S + + +++ G+L
Sbjct: 231 -WATGGGYSVY------ESKPSWQSVVSGTPGRRL---LPDISFDAAQGTGALIYNYGQL 280
Query: 219 LVIGGYS 225
IGG S
Sbjct: 281 QQIGGTS 287
>pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana
pdb|1R9J|B Chain B, Transketolase From Leishmania Mexicana
Length = 673
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 63 RVDQSRKSGVPKRFATPVYRITVLELGSG 91
R D SR G P+RF TP +T LG G
Sbjct: 93 RQDGSRTPGHPERFVTPGVEVTTGPLGQG 121
>pdb|3LKZ|A Chain A, Structural And Functional Analyses Of A Conserved
Hydrophobic Pocket Of Flavivirus Methyltransferase
pdb|3LKZ|B Chain B, Structural And Functional Analyses Of A Conserved
Hydrophobic Pocket Of Flavivirus Methyltransferase
Length = 321
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 35/137 (25%)
Query: 26 TISSVCKGWKSEISRPEFRRNRKDTRSSEQLLFMTQARVDQSRKSG-------------- 71
T+ V K +++++ EF R RK E ++ + ++ +RK G
Sbjct: 28 TLGEVWKERLNQMTKEEFTRYRK-----EAIIEVDRSAAKHARKEGNVTGGHPVSRGTAK 82
Query: 72 ----VPKRFATPVYRITVLELGSGEW-------SELPPIPGFPDGLPLFCQLSAVGPELV 120
V +RF PV ++ L G G W + + G+ G P + P+LV
Sbjct: 83 LRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEE-----PQLV 137
Query: 121 VIGGLDLTTWEASSSVF 137
G ++ T ++ VF
Sbjct: 138 QSYGWNIVTMKSGVDVF 154
>pdb|2OY0|A Chain A, Crystal Structure Of The West Nile Virus Methyltransferase
pdb|2OY0|B Chain B, Crystal Structure Of The West Nile Virus Methyltransferase
Length = 262
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 35/137 (25%)
Query: 26 TISSVCKGWKSEISRPEFRRNRKDTRSSEQLLFMTQARVDQSRKSG-------------- 71
T+ V K +++++ EF R RK E ++ + ++ +RK G
Sbjct: 2 TLGEVWKERLNQMTKEEFTRYRK-----EAIIEVDRSAAKHARKEGNVTGGHPVSRGTAK 56
Query: 72 ----VPKRFATPVYRITVLELGSGEW-------SELPPIPGFPDGLPLFCQLSAVGPELV 120
V +RF PV ++ L G G W + + G+ G P + P+LV
Sbjct: 57 LRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEE-----PQLV 111
Query: 121 VIGGLDLTTWEASSSVF 137
G ++ T ++ VF
Sbjct: 112 QSYGWNIVTMKSGVDVF 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,913,111
Number of Sequences: 62578
Number of extensions: 354379
Number of successful extensions: 803
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 749
Number of HSP's gapped (non-prelim): 52
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)